Psyllid ID: psy7040

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710------
Protein Sequence
MSKLNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIWMSLV
Secondary Structure (PSIPRED)
ccEEEEEEEcccccccccEEEEEEEcccEEEEEEEccccccccEEEEEEEEccccccccccEEEEEEccEEEEEEEcccccccccccEEEEEEEccccccEEEEEEEcccEEEEcccccccEEEEEEEEEcccccccccccccEEEEccccccccccccccccccccEEcccccEEEEEEEccccEEEEccccccccEEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEEccEEEEEEEcccccccccccEEEEEEEEcccccEEEcEEEEccccEEEEcccccccEEEEEEEEEcccccccccccccEEEccccccccccccccEEEcccccEEEEEEccccccccccccEEEEEEEEcccccEEEEccccccccEEEEcccccccEEEEEEEEEccccccccccccccEEEccccccccccccccccEEEEcccEEEEEEEEEEEcccccEEEEccEEEccccEEEEEEcccEEEEEEccccccccEEEEEEEEccccccccEEEEEEEEcccccccccccccccEEEEEEEEEEcccccEEEEEEEcccEEEEEEEcccEEEEEEccccccccEEEEEEEEcccccccccEEEEcccccccccccEEcEEEEccEEEEEEEcccccccccccEEEEEEEccccEEEEEEEcccEEEEEEccccccccEEEEEEEEccccccEEEEEEEEEEcccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEccccccccEEEEEEccccccEEEEEccccccccccEEEEEEccccccccccEEEEEcccEEEEEEccccccccccEEEEEEEEEcccccEEEEEEEcccEEEEEEccccccEEEEEEEEEEcccccccccccccEccccccccccccccEEEEcccccEcccccEEEEEEEccEEEEEEEcccccccEEEEEEEEEccccccccEEEEEEccccccccccEEEEEcccEEEEEEEcccccccccEEEEEEEEEccccccEEEEEEEcccEEEEEEEccccccEEEEEEEEEEcccccccccccccEEEEccccccccccccEEEEEcccEEEEEEEccccccccccEEEEEEEEccccccEEEEEEEcccEEEEEEEccccccEEEEEEEEEEcccccccccccccEEcccccccccccccccEEEEEEcccEEEEEEEcccccccEEEEEEEcEEcccccEEEEEEcccEEEEEEEEccccccEEEEEEEEccEccccccEEEEEEEEEEEEccccccccccccEEEEEEEEccccccEEEEEEccccEEEEEEcccEEEEEEEcccccccEEEEEEEEEccccccccEEEEEEcccccccccEEEcccccccEEEEcccccccccccEEEEEEcEEcccccEEEEEEcccEEEEEEEcccccccEEEEEEEEEcccccccccEEEEEccccccccccEEEEccc
Coil and Loop (DISEMBL)
msklnrlintkpakpegplevsnihkdgctlkwnkpkddggeplegylvekdrgldpegplevsnihkdgctlkwnkpkddggeplegylvekydpetgvwipvgktrepemdvtgltpgheYKFRVKALnkegesepletfssiiardpyskytsvssldshkrsnqpcgsgmvrkvqhldynTKLGVRMAQRADagfytvtaeningkdsvEVEVIVldkpsppggplkvsnvhaegvtldwkvpdddggqpiEKYVVDKmdeatgrwtpagetegpvtgleveglipnhkyKFRVRAvnkqgksepltttasieaknpfnqpgkpgtpeikdfdtdfvelawtppeqnggspivgyiiekkekyspiwekcaqtegdtpkgkvldliegnQYEFRVLAVnkggpgepsdptaphiarakkvspyinrdqlsdikvragsnfefdinvigepiptkewlcnditiiskdrfkivnddkstklkvfdskrgdsgiYTLAvknswgtdkgtAKVTVLGCslkwnppeddggapiEYYMVEKMETDTGKVLIKWIRtndkrvtidnvdyftkitirplqrsdtaqytvtatnsqgkdqVFIEVVVtdkpsapegpiqWLLTLTDVTWEISNYLQELHsslmpislesqylmndkrvtidnvdyftkitirplqrsdtaqytvtatnsqgkdqVFIEVVVtdkpsapegpiQIWMSLV
Flexible Loop (DISEMBL)
msklnrlintkpakpegplevsniHKDGCTLkwnkpkddggepLEGYLVEKDRGLDPEGPLEVsnihkdgctlkwnkpkddggEPLEGylvekydpetgvWIPVGKTREPEMdvtgltpgheYKFRVKAlnkegesepletfssiiardpyskytsvssldshkrsnqpcgsgmvrKVQHLDYNTKLGVRMAQRADAGFYTVTaeningkdsVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLdwkvpdddggqPIEKYVVDKMDEATGrwtpagetegpvtgleveglipnhKYKFRVRavnkqgksepltttasieaknpfnqpgkpgTPEIKDFDTDFVELAwtppeqnggspiVGYIIEKKEKYSPIWEKCAqtegdtpkgkVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIarakkvspyinrdqlsdikVRAGSNFEFdinvigepiptkewlcNDITIIskdrfkivnddkstklkvfdskrgdsgiytlavknswgtdkgTAKVTVLgcslkwnppeddggAPIEYYMVEKMETDTGKVLIKwirtndkrvtidnvdyftkitirplqrsdtAQYTVtatnsqgkdqvFIEVVVTDkpsapegpiQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFtkitirplqrsdtaQYTVtatnsqgkdqvFIEVVVTdkpsapegpiqiwmslv
Low Complexity Region (SEG)
MSKLNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIWMSLV
Disordered region (IsUnstruct)
****************************CTLK*********************************IHKDGCTLKWN*********LEGYLVEKYDPETGVWIPVGKT******VTGLTPGHEYKFRV***********************************************VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD************NVHAEGVTLDWKVPD*****PIEKYVVDKMDEATGRWT******GPVTGLEVEGLIPNHKYKFRVRA***********************************FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV************************YINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT*****************
Disordered Region (DISOPRED)
MSKLNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIWMSLV
Disordered Region (DISEMBL)
MSKLNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSK***************PCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG*********APHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIWMSLV
Disordered Region (DISPRO)
MSKLNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIWMSL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKLNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIWMSLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	716	2.2.26 [Sep-21-2011]
Q23551	7158	Twitchin OS=Caenorhabditi	yes	N/A	0.861	0.086	0.355	1e-117
Q8WZ42	34350	Titin OS=Homo sapiens GN=	no	N/A	0.860	0.017	0.278	2e-60
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.878	0.017	0.280	5e-60
Q3KNY0	2849	Immunoglobulin-like and f	no	N/A	0.335	0.084	0.366	3e-33
Q86VF2	1251	Immunoglobulin-like and f	no	N/A	0.305	0.175	0.361	2e-32
O70468	1270	Myosin-binding protein C,	no	N/A	0.557	0.314	0.284	3e-32
Q14896	1274	Myosin-binding protein C,	no	N/A	0.548	0.308	0.294	4e-31
P56741	1274	Myosin-binding protein C,	no	N/A	0.548	0.308	0.279	1e-30
P54296	1465	Myomesin-2 OS=Homo sapien	no	N/A	0.613	0.299	0.277	2e-30
Q90688	1272	Myosin-binding protein C,	no	N/A	0.513	0.289	0.282	3e-30

>sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 269/757 (35%), Positives = 380/757 (50%), Gaps = 140/757 (18%)

Query: 4    LNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLD------- 56
            +N  + +KP KP+GP+EV+++ +D  TL W  P+DDGGEP+E Y +EK    D       
Sbjct: 2764 INIKVKSKPTKPKGPIEVTDVFEDRATLDWKPPEDDGGEPIEFYEIEKMNTKDGIWVPCG 2823

Query: 57   -----------------------------PEGPLEV---------------------SNI 66
                                         P  PLE                      ++ 
Sbjct: 2824 RSGDTHFTVDSLNKGDHYKFRVKAVNSEGPSDPLETETDILAKNPFDRPDRPGRPEPTDW 2883

Query: 67   HKDGCTLKWNKPKDDGGEPLEGYLVEKYDP----ETGVWIPVGKTREPEMDVTGLTPGHE 122
              D   LKW+ P  DGG P+E Y +EK       E  + +P G+T      V  LTP  E
Sbjct: 2884 DSDHVDLKWDPPLSDGGAPIEEYQIEKRTKYGRWEPAITVPGGQT---TATVPDLTPNEE 2940

Query: 123  YKFRVKALNKEGESEPLETFSSIIA----------RDPYSKYT-----SVS--------- 158
            Y+FRV A+NK G S+P +   ++IA          RD     T     S+S         
Sbjct: 2941 YEFRVVAVNKGGPSDPSDASKAVIAKPRNLKPHIDRDALKNLTIKAGQSISFDVPVSGEP 3000

Query: 159  --SLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVE 216
              ++  H   N+   +G   K+ + +Y +KL V+  +R D+G +T+ A N NG+D   V+
Sbjct: 3001 APTVTWHWPDNREIRNGGRVKLDNPEYQSKLVVKQMERGDSGTFTIKAVNANGEDEATVK 3060

Query: 217  VIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET 276
            + V+DKP+ P GPL VS+VH + VTL+W+ PDDDGG PIE YV++K D A+GRW PA + 
Sbjct: 3061 INVIDKPTSPNGPLDVSDVHGDHVTLNWRAPDDDGGIPIENYVIEKYDTASGRWVPAAKV 3120

Query: 277  EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF 336
             G  T   V+GLIP H+YKFRV AVN +G+S+PL T  +  AK+PF++PGK   PEI D+
Sbjct: 3121 AGDKTTAVVDGLIPGHEYKFRVAAVNAEGESDPLETFGTTLAKDPFDKPGKTNAPEITDW 3180

Query: 337  DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE 396
            D D V+L W PP  +GG+PI  Y++E K+++SP W   A          V +L EG++YE
Sbjct: 3181 DKDHVDLEWKPPANDGGAPIEEYVVEMKDEFSPFWNDVAHVPAGQTNATVGNLKEGSKYE 3240

Query: 397  FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 456
            FR+ A NK G G+PSD +A  +A+A+ V P I+R+ + +IKV+AG +F  +I V GEP P
Sbjct: 3241 FRIRAKNKAGLGDPSD-SASAVAKARNVPPVIDRNSIQEIKVKAGQDFSLNIPVSGEPTP 3299

Query: 457  TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            T  W      + S DR K+ N+D  TK  V  + R D+G Y +  +N  GTD    KVTV
Sbjct: 3300 TITWTFEGTPVESDDRMKLNNEDGKTKFHVKRALRSDTGTYIIKAENENGTDTAEVKVTV 3359

Query: 517  L------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTND 558
            L                  GC L W  PEDDGGA I +Y++EK +  TG    +W    +
Sbjct: 3360 LDHPSSPRGPLDVTNIVKDGCDLAWKEPEDDGGAEISHYVIEKQDAATG----RWTACGE 3415

Query: 559  KRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVV-------TDKPS 609
             + T  +VD  T+            ++ V A N  G        E ++        DKP 
Sbjct: 3416 SKDTNFHVDDLTQ--------GHEYKFRVKAVNRHGDSDPLEAREAIIAKDPFDRADKPG 3467

Query: 610  APEGPIQWLLTLTDVTWE---------ISNYLQELHS 637
             PE  + W     D+ W          I  YL E+ +
Sbjct: 3468 TPE-IVDWDKDHADLKWTPPADDGGAPIEGYLVEMRT 3503

Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score =  234 bits (597), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 207/742 (27%), Positives = 320/742 (43%), Gaps = 126/742 (16%)

Query: 6     RLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSN 65
             R+++T P  P+  L+V  + K   TL W+ P  DGG  ++ Y+VEK            +N
Sbjct: 22874 RVLDT-PGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN 22931

Query: 66    IHK---------DGC--------------------------------------------- 71
              HK         +GC                                             
Sbjct: 22932 CHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNS 22991

Query: 72    -TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKAL 130
              +L W KP+ DGG  + GY+VE     +  W      +  E  +TGL  G EY FRV A 
Sbjct: 22992 VSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQ 23051

Query: 131   NKEGESEPLETFSSIIARD---------PYSKYTSVSSLD---------------SHKRS 166
             N++G S+P +    +IA+D          ++ +T ++  D               +  + 
Sbjct: 23052 NEKGISDPRQLSVPVIAKDLVIPPAFKLLFNTFTVLAGEDLKVDVPFIGRPTPAVTWHKD 23111

Query: 167   NQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
             N P         +  + N+ L ++ A R D G Y V   N  G+    + VIVLDKP PP
Sbjct: 23112 NVPLKQTTRVNAESTENNSLLTIKDACREDVGHYVVKLTNSAGEAIETLNVIVLDKPGPP 23171

Query: 227   GGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVE 286
              GP+K+  V A+ +TL W  P  DGG  I  Y+V+K D +T  W     T    T ++  
Sbjct: 23172 TGPVKMDEVTADSITLSWGPPKYDGGSSINNYIVEKRDTSTTTWQIVSATVARTT-IKAC 23230

Query: 287   GLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWT 346
              L    +Y+FR+ A N+ GKS  L +  ++ A+ PF  PG PGTP +     D +E+ W 
Sbjct: 23231 RLKTGCEYQFRIAAENRYGKSTYLNSEPTV-AQYPFKVPGPPGTPVVTLSSRDSMEVQWN 23289

Query: 347   PPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG 406
              P  +GGS ++GY +E+KE+ S +W K  +T     K K   L EG +YEFRV A N  G
Sbjct: 23290 EPISDGGSRVIGYHLERKERNSILWVKLNKTPIPQTKFKTTGLEEGVEYEFRVSAENIVG 23349

Query: 407   PGEPSDPTAPHIAR------AKKVSPYINRD----QLSDIKVRAGSNFEFDINVIGEPIP 456
              G+PS  +  ++AR       +  +  + R+    Q        GS     I V  + +P
Sbjct: 23350 IGKPSKVSECYVARDPCDPPGRPEAIIVTRNSVTLQWKKPTYDGGSKITGYI-VEKKELP 23408

Query: 457   TKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514
                W+    T I    F++    +D   + +V    R  +G+++   + S  T   TA+ 
Sbjct: 23409 EGRWMKASFTNIIDTHFEVTGLVEDHRYEFRVI--ARNAAGVFS---EPSESTGAITARD 23463

Query: 515   TVLGCSLKWNPPEDDGGAPIEYYMVEKMETDT---GKVL--IKWIR-----TNDKRVTID 564
              V    +  +P   D    I  +  E  + D    GK +  I+WI+     +N  R+ I 
Sbjct: 23464 EVDPPRISMDPKYKDT---IVVHAGESFKVDADIYGKPIPTIQWIKGDQELSNTARLEIK 23520

Query: 565   NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI--------- 615
             + D+ T ++++   R D+  Y + A N  G+  V + V V D+P  PEGP+         
Sbjct: 23521 STDFATSLSVKDAVRVDSGNYILKAKNVAGERSVTVNVKVLDRPGPPEGPVVISGVTAEK 23580

Query: 616   ---QWLLTLTDVTWEISNYLQE 634
                 W   L D   +I NY+ E
Sbjct: 23581 CTLAWKPPLQDGGSDIINYIVE 23602

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score =  233 bits (593), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 211/751 (28%), Positives = 322/751 (42%), Gaps = 122/751 (16%)

Query: 19    LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHK---------D 69
             L+V+ I KD  ++ W  P  DGG  ++ Y+VEK           V+N HK         +
Sbjct: 24829 LKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKSYAAVVTNCHKNSWKIDQLQE 24888

Query: 70    GC----------------------------------------------TLKWNKPKDDGG 83
             GC                                              +L W KP+ DGG
Sbjct: 24889 GCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGG 24948

Query: 84    EPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFS 143
               +  Y+VE     T  W    + +  +  +T LT G EY FRV A+N++G S+P     
Sbjct: 24949 SKIIQYIVEMQAKNTDKWSECARVKSLDAVITNLTQGEEYLFRVIAVNEKGRSDPRSLAV 25008

Query: 144   SIIARD---------PYSKYTSVSSLDSHKR---SNQPCGS------GM-------VRKV 178
              IIA+D          +S Y+     D       S +P  S      GM       +   
Sbjct: 25009 PIIAKDLVIEPDVRPAFSSYSVQVGQDLKIEVPISGRPKPSISWTKDGMPLKQTTRINVT 25068

Query: 179   QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAE 238
               LD  T L ++   + D G Y +T  N+ G+ +  +E+I LDKP PP GP+K   + AE
Sbjct: 25069 DSLDLTT-LSIKETHKDDGGQYGITVSNVVGQKTAAIEIITLDKPDPPKGPVKFDEISAE 25127

Query: 239   GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRV 298
              +TL W  P   GG  I  Y+V K D  T  W     T    T L+V  L    +Y+FR+
Sbjct: 25128 SITLSWNPPLYTGGCQITNYIVQKRDTTTTVWDVVSATVARTT-LKVTKLKTGTEYQFRI 25186

Query: 299   RAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVG 358
              A N+ G+S  L +   + A+ P+ +PG PGTP +     + + + W  P  NGGSP++G
Sbjct: 25187 FAENRYGQSFALESEPVV-AQYPYKEPGPPGTPFVTAISKESMVVQWHEPINNGGSPVIG 25245

Query: 359   YIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI 418
             Y +E+KE+ S +W K  +T     + K L+L EG +YEFRV A N  G G+ S  +  ++
Sbjct: 25246 YHLERKERNSILWTKVNKTIIHDTQFKALNLEEGIEYEFRVYAENIVGVGKASKNSECYV 25305

Query: 419   ARAKKVSP------YINRDQLS---DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS 469
             AR     P       + R++++      V  G +      V    +P   W+    T + 
Sbjct: 25306 ARDPCDPPGTPEAIIVKRNEITLQWTKPVYDGGSMITGYIVEKRDLPEGRWMKASFTNVI 25365

Query: 470   KDRFKI--VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPE 527
             + +F +  + +D+  + +V  +K     I     K S  T   TAK  V    +  +P  
Sbjct: 25366 ETQFTVSGLTEDQRYEFRVI-AKNAAGAIS----KPSDSTGPITAKDEVELPRISMDPKF 25420

Query: 528   DDGGAPIEYYMVEKMETDT-GKVL--IKWIRTNDK-----RVTIDNVDYFTKITIRPLQR 579
              D    +      ++E D  GK L  I+W+R + +     R  I N D+   + ++   R
Sbjct: 25421 RDTIV-VNAGETFRLEADVHGKPLPTIEWLRGDKEIEESARCEIKNTDFKALLIVKDAIR 25479

Query: 580   SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ------------WLLTLTDVTWE 627
              D  QY + A+N  G     + V V D+P  PEGP+Q            W   L D   +
Sbjct: 25480 IDGGQYILRASNVAGSKSFPVNVKVLDRPGPPEGPVQVTGVTAEKCTLAWSPPLQDGGSD 25539

Query: 628   ISNYLQELH--SSLMPISLESQYLMNDKRVT 656
             IS+Y+ E    S L    + S+ + N  +VT
Sbjct: 25540 ISHYVVEKRETSRLAWTVVASEVVTNSLKVT 25570

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q3KNY0|IGFN1_MOUSE Immunoglobulin-like and fibronectin type III domain-containing protein 1 OS=Mus musculus GN=Igfn1 PE=1 SV=3

 Score =  144 bits (362), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 89/243 (36%), Positives = 119/243 (48%), Gaps = 3/243 (1%)

Query: 194  RADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQ 253
            R D+G Y+VT  +  G    E  + V+DKP PP GPL+V + H  GV L W  P D+GGQ
Sbjct: 2213 RKDSGRYSVTLRSEGGCVQAEFTLQVIDKPQPPQGPLEVQDCHRAGVCLRWLPPRDNGGQ 2272

Query: 254  PIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
             I+ YVV++       W   GE     T      +    KY FRVRAV   G  + L + 
Sbjct: 2273 VIQHYVVERRQAGRSTWLKVGEPPSDSTSFTDTSVEQGKKYAFRVRAVTSVGAGDALESE 2332

Query: 314  ASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
              + A  P   PG P  P I    +  + L W  P+  G + I+GY+IEK +K S  W  
Sbjct: 2333 EVLVA--PEALPGPPSAPAILSASSQSITLTWGAPQGPGSNHILGYLIEKHKKGSNTWMA 2390

Query: 374  CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD-Q 432
              +      +  V+ L +G QYEFRV AV   GPG+P  P+    AR     P   RD Q
Sbjct: 2391 VNEQPVSERRYTVVGLRQGCQYEFRVTAVTLSGPGDPGPPSDAVFARDPMRPPGPVRDLQ 2450

Query: 433  LSD 435
            ++D
Sbjct: 2451 VTD 2453

Mus musculus (taxid: 10090)

>sp|Q86VF2|IGFN1_HUMAN Immunoglobulin-like and fibronectin type III domain-containing protein 1 OS=Homo sapiens GN=IGFN1 PE=1 SV=2

 Score =  141 bits (355), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVT 241
           D  T+L +  A R D G Y+VT  +  G    E+ + V+DKP PP GP++V + H  GV 
Sbjct: 603 DGYTRLCLPSAGRKDCGQYSVTLRSEGGSVQAELTLQVIDKPDPPQGPMEVQDCHRAGVC 662

Query: 242 LDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV 301
           L W+ P D+GG+ +E YVV++       W   GE     T      + P  KY FRVRAV
Sbjct: 663 LRWRPPRDNGGRTVECYVVERRQAGRSTWLKVGEAPADSTTFTDAHVEPGRKYTFRVRAV 722

Query: 302 NKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYII 361
             +G  E L +   + A  P   P  P  P I    +  + L WT P   G + I+GY+I
Sbjct: 723 TSEGAGEALESEEILVA--PEALPKAPSAPAILSASSQGITLTWTAPRGPGSAHILGYLI 780

Query: 362 EKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV 402
           E+++K S  W           +  V D+ +G QYEFRV AV
Sbjct: 781 ERRKKGSNTWTAVNDQPVPERRWTVADVRQGCQYEFRVTAV 821

Homo sapiens (taxid: 9606)

>sp|O70468|MYPC3_MOUSE Myosin-binding protein C, cardiac-type OS=Mus musculus GN=Mybpc3 PE=1 SV=1

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 184/436 (42%), Gaps = 37/436 (8%)

Query: 189  VRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPD 248
            V  A++ D G YTVT +N  G+D V + V V+D P  P  P K+SNV  +  T+ W+ P 
Sbjct: 734  VEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVIDVPDAPAAP-KISNVGEDSCTVQWEPPA 792

Query: 249  DDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
             DGGQP+  Y++++  + + RW             E   +I    Y+ RV AVN  G S 
Sbjct: 793  YDGGQPVLGYILERKKKKSYRWMRLNFDLLRELSHEARRMIEGVAYEMRVYAVNAVGMSR 852

Query: 309  PLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS 368
            P   + + +   P   PG+P    ++D     V L W PPE+ G   + GY +E  ++  
Sbjct: 853  P---SPASQPFMPIGPPGEPTHLAVEDVSDTTVSLKWRPPERVGAGGLDGYSVEYCQEGC 909

Query: 369  PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYI 428
              W    Q   +     V DL  G +  FRV A N  GPG P     P   +     P +
Sbjct: 910  SEWTPALQGLTERRSMLVKDLPTGARLLFRVRAHNVAGPGGPIVTKEPVTVQEILQRPRL 969

Query: 429  N--RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKV 486
               R     I+ + G      I   G+P P   W   +   ++ +   I N    T L +
Sbjct: 970  QLPRHLRQTIQKKVGEPVNLLIPFQGKPRPQVTW-TKEGQPLAGEEVSIRNSPTDTILFI 1028

Query: 487  FDSKRGDSGIYTLAVKNSWGTDKGTAKVTV-----------------LGCSLKWNPPEDD 529
              ++R  SG Y + V+     DK T  + +                    +L+W PP+DD
Sbjct: 1029 RAARRTHSGTYQVTVRIENMEDKATLILQIVDKPSPPQDIRIVETWGFNVALEWKPPQDD 1088

Query: 530  GGAPIEYYMVEKMETDTGK---VLIKWIRTND--KRVTIDNVDYFTKITIRPLQRSDTAQ 584
            G   I  Y V+K +  T +   VL  + RT+     + I N  YF   +   +  SD A 
Sbjct: 1089 GNTEIWGYTVQKADKKTMEWFTVLEHYRRTHCVVSELIIGNGYYFRVFSHNMVGSSDKAA 1148

Query: 585  YTVTATNSQGKDQVFI 600
             T        K+ VFI
Sbjct: 1149 AT--------KEPVFI 1156

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Mus musculus (taxid: 10090)

>sp|Q14896|MYPC3_HUMAN Myosin-binding protein C, cardiac-type OS=Homo sapiens GN=MYBPC3 PE=1 SV=4

 Score =  137 bits (344), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 188/442 (42%), Gaps = 49/442 (11%)

Query: 189  VRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPD 248
            V  A++ D G YTVT +N  G+D V + V V+D P  P  P K+SNV  +  T+ W+ P 
Sbjct: 738  VEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVIDVPDAPAAP-KISNVGEDSCTVQWEPPA 796

Query: 249  DDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
             DGGQPI  Y++++  + + RW             E   +I    Y+ RV AVN  G S 
Sbjct: 797  YDGGQPILGYILERKKKKSYRWMRLNFDLIQELSHEARRMIEGVVYEMRVYAVNAIGMSR 856

Query: 309  PLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS 368
            P   + + +   P   P +P    ++D     V L W PPE+ G   + GY +E    Y 
Sbjct: 857  P---SPASQPFMPIGPPSEPTHLAVEDVSDTTVSLKWRPPERVGAGGLDGYSVE----YC 909

Query: 369  PIWEKC----AQTEGDTPKGKVL--DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK 422
            P  E C    A  +G T    +L  DL  G +  FRV A N  GPG P   T P   +  
Sbjct: 910  P--EGCSEWVAALQGLTEHTSILVKDLPTGARLLFRVRAHNMAGPGAPVTTTEPVTVQEI 967

Query: 423  KVSPYIN--RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 480
               P +   R     I+ + G      I   G+P P   W   +   ++ +   I N   
Sbjct: 968  LQRPRLQLPRHLRQTIQKKVGEPVNLLIPFQGKPRPQVTW-TKEGQPLAGEEVSIRNSPT 1026

Query: 481  STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV-----------------LGCSLKW 523
             T L +  ++R  SG Y + V+     DK T  + V                 L  +L+W
Sbjct: 1027 DTILFIRAARRVHSGTYQVTVRIENMEDKATLVLQVVDKPSPPQDLRVTDAWGLNVALEW 1086

Query: 524  NPPEDDGGAPIEYYMVEKMETDTGK---VLIKWIRTND--KRVTIDNVDYFTKITIRPLQ 578
             PP+D G   +  Y V+K +  T +   VL  + RT+     + I N  YF   +   + 
Sbjct: 1087 KPPQDVGNTELWGYTVQKADKKTMEWFTVLEHYRRTHCVVPELIIGNGYYFRVFSQNMVG 1146

Query: 579  RSDTAQYTVTATNSQGKDQVFI 600
             SD A  T        K+ VFI
Sbjct: 1147 FSDRAATT--------KEPVFI 1160

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Homo sapiens (taxid: 9606)

>sp|P56741|MYPC_RAT Myosin-binding protein C, cardiac-type OS=Rattus norvegicus GN=Mybpc3 PE=2 SV=2

 Score =  135 bits (340), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 177/422 (41%), Gaps = 29/422 (6%)

Query: 189  VRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPD 248
            V  A++ D G YTVT +N  G+D V + V V+D P  P  P K+SNV  +   + W+ P 
Sbjct: 738  VEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVIDVPDAPAAP-KISNVGEDSCIVQWEPPA 796

Query: 249  DDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
             DGGQP+  Y++++  + + RW             E   +I    Y+ RV AVN  G S 
Sbjct: 797  YDGGQPVLGYILERKKKKSYRWMRLNFDLLRELSHEARRMIEGVAYEMRVYAVNAVGMSR 856

Query: 309  PLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS 368
            P   + + +   P   PG+P    ++D     V L W PPE+ G   + GY +E  ++  
Sbjct: 857  P---SPASQPFMPIGPPGEPTHLTVEDVSDTTVSLKWRPPERVGAGGLDGYSVEYCQEGC 913

Query: 369  PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYI 428
              W    Q   +     V DL  G +  FRV A N  GPG P     P   +     P +
Sbjct: 914  SEWVTALQGLTERTSLLVKDLPTGARLLFRVRAHNVAGPGGPIITKEPVTVQEILQRPRL 973

Query: 429  N--RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKV 486
               R     I+ + G      I   G+P P   W   +   ++ +   I N    T L +
Sbjct: 974  QLPRHLRQTIQKKVGEPVNLLIPFQGKPRPQVTW-TKEGQPLAGEEVSIRNSPTDTILFI 1032

Query: 487  FDSKRGDSGIYTLAVKNSWGTDKGTAKVTV-----------------LGCSLKWNPPEDD 529
              + R  SG Y + V+     DK T  + +                    +L+W PP+DD
Sbjct: 1033 RAAHRTHSGTYQVTVRIENMEDKATLVLQIVDKPSPPLDIRVVETWGFSVALEWKPPQDD 1092

Query: 530  GGAPIEYYMVEKMETDTGK---VLIKWIRTND--KRVTIDNVDYFTKITIRPLQRSDTAQ 584
            G   I  Y V+K +  T +   VL  + +T+     + I N  YF   +   +  SD A 
Sbjct: 1093 GNTEIWGYTVQKADKKTMEWFTVLEHYRQTHCVVSELIIGNGYYFRVFSHNMVGSSDRAA 1152

Query: 585  YT 586
             T
Sbjct: 1153 AT 1154

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Rattus norvegicus (taxid: 10116)

>sp|P54296|MYOM2_HUMAN Myomesin-2 OS=Homo sapiens GN=MYOM2 PE=1 SV=2

 Score =  134 bits (338), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 202/490 (41%), Gaps = 51/490 (10%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TREPEMD 113
           P   +  S I ++   L W  P   G +PL  Y +EK    +G W  V      R P   
Sbjct: 513 PPTGVHASEISRNYVVLSWEPPTPRGKDPLM-YFIEKSVVGSGSWQRVNAQTAVRSPRYA 571

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPY--------------SKYTSVSS 159
           V  L  G  Y FRV + N+ G SEP E  S I A+D                +K + V  
Sbjct: 572 VFDLMEGKSYVFRVLSANRHGLSEPSEITSPIQAQDVTVVPSAPGRVLASRNTKTSVVVQ 631

Query: 160 LDSHKRSN-----------------QPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTV 202
            D  K                    +PC    +   + + +    G +   R  A     
Sbjct: 632 WDRPKHEEDLLGYYVDCCVAGTNLWEPCNHKPIGYNRFVVHGLTTGEQYIFRVKAVNAVG 691

Query: 203 TAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDK 262
            +EN    D ++V+   L  PS P G + + N     +TL WKVP   GG PI  Y +DK
Sbjct: 692 MSENSQESDVIKVQA-ALTVPSHPYG-ITLLNCDGHSMTLGWKVPKFSGGSPILGYYLDK 749

Query: 263 MDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPF 322
            +     W     +    T L V+GL     Y+F++ AVN  G  EP   +   + +  +
Sbjct: 750 REVHHKNWHEVNSSPSKPTILTVDGLTEGSLYEFKIAAVNLAGIGEPSDPSEHFKCE-AW 808

Query: 323 NQPGKPGTPEIKDF----DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTE 378
             P +PG      F    DT  V L W  P  +G SP+ GY ++ +E+ +  W    QT 
Sbjct: 809 TMP-EPGPAYDLTFCEVRDTSLVML-WKAPVYSGSSPVSGYFVDFREEDAGEWITVNQTT 866

Query: 379 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKV 438
                 KV DL +G  Y FRV AVN  G G+PSD + P +  A+  +  I+    + +  
Sbjct: 867 TANRYLKVSDLQQGKTYVFRVRAVNANGVGKPSDTSEPVLVEARPGTKEIS----AGVDE 922

Query: 439 RAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKIVNDDKSTKLKVFDSKRGDSGIY 497
           +      FD   + +   ++   C     IS D RFKI      +KL + +  + D G Y
Sbjct: 923 QGNIYLGFDCQEMTD--ASQFTWCKSYEEISDDERFKIETVGDHSKLYLKNPDKEDLGTY 980

Query: 498 TLAVKNSWGT 507
           +++V ++ G 
Sbjct: 981 SVSVSDTDGV 990

Major component of the vertebrate myofibrillar M band. Binds myosin, titin, and light meromyosin. This binding is dose dependent.

Homo sapiens (taxid: 9606)

>sp|Q90688|MYPC3_CHICK Myosin-binding protein C, cardiac-type OS=Gallus gallus GN=MYBPC3 PE=1 SV=3

 Score =  134 bits (337), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 172/393 (43%), Gaps = 25/393 (6%)

Query: 173  GMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKV 232
            G VR  +H D+   + +  A++ D G Y V  +N  G+D  ++ V V+D P PP  P K+
Sbjct: 721  GRVRVEKHEDHCVFI-IEGAEKEDEGVYRVIVKNPVGEDKADITVKVIDVPDPPEAP-KI 778

Query: 233  SNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNH 292
            SN+  +  T+ W+ P  DGGQP+  Y++++  + + RW             E + +I   
Sbjct: 779  SNIGEDYCTVQWQPPTYDGGQPVLGYILERKKKKSYRWMRLNFDLLKELTYEAKRMIEGV 838

Query: 293  KYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNG 352
             Y+ R+ AVN  G S P   + + +   P   P +P    ++D     V L W PPE+ G
Sbjct: 839  VYEMRIYAVNSIGMSRP---SPASQPFMPIAPPSEPTHFTVEDVSDTTVALKWRPPERIG 895

Query: 353  GSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD 412
               + GYI+E  +  S  W        +     + DL+ G++  FRV A+N  G    + 
Sbjct: 896  AGGLDGYIVEYCKDGSAEWTPALPGLTERTSALIKDLVTGDKLYFRVKAINLAGESGAAI 955

Query: 413  PTAPHIARAKKVSPYIN--RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK 470
               P   +     P I   R     +  + G      I   G+P P   W+ +  T+ SK
Sbjct: 956  IKEPVTVQEIMQRPKICVPRHLRQTLVKKVGETINIMIPFQGKPRPKISWMKDGQTLDSK 1015

Query: 471  DRFKIVNDDKSTKLKVFDSKRGDSGIY--TLAVKNSWGTDKGT---------------AK 513
            D   I N    T L +  ++   SG Y  TL ++N   T   T               A 
Sbjct: 1016 D-VGIRNSSTDTILFIRKAELHHSGAYEVTLQIENMTDTVAITIQIIDKPGPPQNIKLAD 1074

Query: 514  VTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDT 546
            V     +L+W PP+DDG A I  Y V+K +  T
Sbjct: 1075 VWGFNVALEWTPPQDDGNAQILGYTVQKADKKT 1107

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle A bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. May be involved in the early phase of myofibrillogenesis.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	716
307200525	5935	Titin [Harpegnathos saltator]	0.843	0.101	0.443	1e-163
357609022	7481	hypothetical protein KGM_13458 [Danaus p	0.925	0.088	0.423	1e-162
328789682	8619	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.843	0.070	0.443	1e-158
380026625	8679	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.843	0.069	0.443	1e-158
345486445	8816	PREDICTED: twitchin-like [Nasonia vitrip	0.847	0.068	0.447	1e-155
328710146	8645	PREDICTED: twitchin-like [Acyrthosiphon	0.913	0.075	0.419	1e-155
263359660	8965	hypothetical protein DVIR88_6g0033 [Dros	0.849	0.067	0.435	1e-154
195402301	8965	GJ15760 [Drosophila virilis] gi|19415595	0.849	0.067	0.435	1e-154
195172580	8120	GL18185 [Drosophila persimilis] gi|19411	0.844	0.074	0.429	1e-152
198462226	6019	GA22407 [Drosophila pseudoobscura pseudo	0.843	0.100	0.431	1e-152

>gi|307200525|gb|EFN80687.1| Titin [Harpegnathos saltator]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 324/731 (44%), Positives = 424/731 (58%), Gaps = 127/731 (17%)

Query: 8    INTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGG-----------EPLEGYLVEKDRGLD 56
            +  KP  PEGPL+V+++HK+GC LKW +PKDDGG           +P  G  V   R  +
Sbjct: 1764 VTDKPTPPEGPLQVTDVHKEGCKLKWKRPKDDGGTPIEYYQVDKMDPETGCWVPCGRSTE 1823

Query: 57   PE----------------------------------------------GPLEVSNIHKDG 70
            P                                               G L  ++  KD 
Sbjct: 1824 PNLEVTGLTPGKEYLFRVAAVNAEGESKPLEAEQAILAKNPFDEPGKPGDLRATDWDKDH 1883

Query: 71   CTLKWNKPKDDGGEPLEGYLVEKYDP----ETGVWIPVGKTREPEMDVTGLTPGHEYKFR 126
              LKW  P+ DGG P+ GY++EK D     E  + +P  +T      V  L  G  Y+FR
Sbjct: 1884 VDLKWTPPESDGGSPITGYVIEKKDKYGEWEKALEVPADET---SATVPDLIEGQPYEFR 1940

Query: 127  VKALNKEGESEPLETFSSIIA--RDPYSKYTSVSSLDSHKRSNQ-------------PCG 171
            V+A+NK G  EP +   +IIA  R+   +    + ++   ++ Q             P  
Sbjct: 1941 VRAVNKAGPGEPSDATPTIIAKPRNQAPRIDRTNLIEVRIKAGQNFSFDCKVTGEPPPTT 2000

Query: 172  SGMVR----------KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
              M+           KV+H+DYNT L VRMA RA++G YTV AENINGKD   V+V VLD
Sbjct: 2001 KWMLNGKEVRPSERVKVKHVDYNTSLNVRMATRAESGKYTVIAENINGKDEAFVKVTVLD 2060

Query: 222  KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
            KPSPP GPL+ ++VHAEG  L WK P+DDGGQP++KYVV+KMDEATGRW PAGET+GP T
Sbjct: 2061 KPSPPQGPLRATDVHAEGCKLTWKPPEDDGGQPVDKYVVEKMDEATGRWVPAGETDGPET 2120

Query: 282  GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
             L+VEGL P HKYKFRVRAVNKQGKSEPLT   SIEAKNPF++PGKPGTP + D+DT+FV
Sbjct: 2121 NLQVEGLTPGHKYKFRVRAVNKQGKSEPLTAMQSIEAKNPFDEPGKPGTPSVVDYDTNFV 2180

Query: 342  ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA 401
            EL W  PE++GGSPI GYIIEK++KYSP WEKCA+ +GD  +GKV DL+EG QYEFRV A
Sbjct: 2181 ELQWDRPEEDGGSPITGYIIEKRDKYSPTWEKCAEVDGDVNRGKVEDLVEGTQYEFRVRA 2240

Query: 402  VNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL 461
            VNK GPGEPS+ +  H+AR K + P I+R  + D+KVRAG  F+FD+ VIGEP P+KEW 
Sbjct: 2241 VNKAGPGEPSEASKAHVARPKNLPPKIDRKYMLDVKVRAGGFFDFDVPVIGEPPPSKEWS 2300

Query: 462  CNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL---- 517
              D+ +++ DR KI N+D +TK+++ ++KR DSG+YTL  +N  G D  T  V VL    
Sbjct: 2301 LKDVAVMASDRIKITNEDYNTKVRIIEAKRSDSGVYTLVARNVNGKDSATLTVNVLDVPS 2360

Query: 518  --------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTI 563
                          GC+LKW PP+DDGG+ I+YY VEKM+T+     ++W+   +   T 
Sbjct: 2361 PPEGPLKVDNVTKNGCTLKWRPPKDDGGSEIQYYQVEKMDTEN----MRWVPVAEANTTS 2416

Query: 564  DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVVTD----KPSAPEGPIQ- 616
              VD+        L      Q+ V A N QG+ Q    ++++       KP  P  P+  
Sbjct: 2417 ARVDH--------LIEGHDYQFRVRAVNKQGESQPLTGMDIITAKDPFGKPDKPGAPVAT 2468

Query: 617  -WLLTLTDVTW 626
             W     D+ W
Sbjct: 2469 DWDKDHVDLEW 2479

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357609022|gb|EHJ66254.1| hypothetical protein KGM_13458 [Danaus plexippus]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 340/802 (42%), Positives = 442/802 (55%), Gaps = 139/802 (17%)

Query: 4    LNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGG---------------------- 41
            +N ++  KP+KPEGP+++S++HKDGCTLKW +PKDDGG                      
Sbjct: 3374 INVIVTDKPSKPEGPMQISDVHKDGCTLKWKRPKDDGGTPVEYYQVEKMDTETGCWVPCA 3433

Query: 42   -------------------------------EPL--EGYLVEKDRGLDPEGP--LEVSNI 66
                                           EPL  E  +V K+   +P  P    V++ 
Sbjct: 3434 RSDEPKCEVTGLTPGKEYKFRVCAVNSEGESEPLVSEEAIVAKNPFDEPGAPGTPSVTDW 3493

Query: 67   HKDGCTLKWNKPKDDGGEPLEGYLVEKYDP----ETGVWIPVGKTREPEMDVTGLTPGHE 122
             KD   LKW  PK+DGG P+EGY+VEK D     E  + +P  KT      V  L  G  
Sbjct: 3494 DKDHVDLKWTPPKEDGGAPIEGYIVEKKDKFGNWEKALEVPADKT---SCTVPDLVEGQT 3550

Query: 123  YKFRVKALNKEGESEPLETFSSIIA--RDPYSKYTSVSSLDSHKRSNQPCG--------- 171
            Y+FRV+A+NK G   P ++   I+A  R+   K    + +D   +  Q  G         
Sbjct: 3551 YEFRVRAVNKAGPGVPSDSTHPIVAKPRNMAPKIDRTNLIDIKIKVGQKFGFDVKVSGEP 3610

Query: 172  --------------SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEV 217
                          S    KVQH DYN+K+  + A RAD+G YT+TAEN+NGKD  EVEV
Sbjct: 3611 MPETKWFLGKREVKSSGDMKVQHSDYNSKIACKAATRADSGRYTITAENVNGKDVAEVEV 3670

Query: 218  IVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277
            IVL  PSPPGGPLKVS+VHA G  L W  P DDGGQPIEKYVV++MDEATGRW  AGET+
Sbjct: 3671 IVLSVPSPPGGPLKVSDVHANGAKLSWNPPADDGGQPIEKYVVERMDEATGRWVQAGETD 3730

Query: 278  GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFD 337
            GP T L V+GL P HKYKFRVRAVN+QGKSEPLTT  + EAKNPF+   KPGTP IKDFD
Sbjct: 3731 GPQTNLAVDGLTPGHKYKFRVRAVNRQGKSEPLTTPHATEAKNPFDVASKPGTPRIKDFD 3790

Query: 338  TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
             DFVEL WT P+ +GG+PI GY+IEKK++++P WE+CAQ EGD   GKV DLIEGN YEF
Sbjct: 3791 KDFVELEWTRPDSDGGAPITGYVIEKKDRFAPDWEECAQIEGDVTSGKVPDLIEGNTYEF 3850

Query: 398  RVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT 457
            RV AVNK G G PSD TAPH+AR K ++P I+R+ + DIK++ G NFE D+ V GEP PT
Sbjct: 3851 RVRAVNKAGKGVPSDSTAPHVARPKNLAPKIDRNFMFDIKIKVGQNFELDVPVAGEPTPT 3910

Query: 458  KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
            KEWL  +  +++ DR K+VND  STK++V D+KR D+G YTL  KN  GTD  T K+ V+
Sbjct: 3911 KEWLHGENMVLNTDRIKVVNDAHSTKIRVIDAKRADTGTYTLKAKNINGTDSATVKIVVM 3970

Query: 518  ------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDK 559
                              GC+L+W PP+DDGG+ I +Y+VEKM+ +     ++W+   + 
Sbjct: 3971 DVPLPPEGPLRVDDITKSGCTLRWRPPKDDGGSEITHYVVEKMDQEN----LRWVPAGEV 4026

Query: 560  RVTIDNVDYFTK-----ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP--- 611
            +     +D+  +       +R + R   +Q  V +     KD         DKP  P   
Sbjct: 4027 QGCNIRIDHLIEGHDYNFRVRAVNRHGESQPLVGSEPITAKDPYG----TPDKPGTPVVK 4082

Query: 612  -----EGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKI 666
                    I+W+    D    I+ Y+ E      P  + +    N            T  
Sbjct: 4083 DWDKDHMDIEWVPPKKDGGSPITGYVIEARKKYGPWQVAATVPGNQ-----------TTA 4131

Query: 667  TIRPLQRSDTAQYTVTATNSQG 688
            TI  LQ  +  ++ V A N  G
Sbjct: 4132 TIPGLQEGEEYEFRVIAVNKAG 4153

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789682|ref|XP_003251305.1| PREDICTED: LOW QUALITY PROTEIN: twitchin [Apis mellifera]

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 324/731 (44%), Positives = 420/731 (57%), Gaps = 127/731 (17%)

Query: 8    INTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGG-----------EPLEGYLVEKDRGLD 56
            +  KP  PEGPL+VS++HK+GC LKW +PKDDGG           +P  G  V   R  +
Sbjct: 4454 VTDKPMPPEGPLQVSDVHKEGCKLKWKRPKDDGGTPIEYYQVEKMDPETGCWVPCGRSTE 4513

Query: 57   PE----------------------------------------------GPLEVSNIHKDG 70
            P                                               G L  ++  KD 
Sbjct: 4514 PNLEVSGLTPGKEYLFRVTAVNAEGESKPLEAEQAILAKNPYDEPGKPGDLRATDWDKDH 4573

Query: 71   CTLKWNKPKDDGGEPLEGYLVEKYDP----ETGVWIPVGKTREPEMDVTGLTPGHEYKFR 126
              L W+ P  DGG P+ GY++EK D     E  V +P  +T      V  L  G  Y+FR
Sbjct: 4574 VDLAWSPPTSDGGSPITGYIIEKKDKYGEWEKAVEVPAYET---SATVPDLIEGQPYEFR 4630

Query: 127  VKALNKEGESEPLETFSSIIA--RDPYSKYTSVSSLDSHKRSNQP--------------- 169
            V+A+NK G  EP +   +IIA  R+   K    + ++   ++ Q                
Sbjct: 4631 VRAVNKAGPGEPSDPTPTIIAKPRNQPPKIDRTNLIEVRIKAGQNFSFDVKVSGEPPPTT 4690

Query: 170  ---CGSGMVR-----KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
                G   VR     KV+H+DY+T L VRMA RA++G YT+TAENING+D   V+V VLD
Sbjct: 4691 KWLLGKREVRPTERVKVKHVDYSTSLSVRMATRAESGRYTITAENINGEDEAFVKVTVLD 4750

Query: 222  KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
             PSPP GPL+ S+VHAEG TL WK P+DDGGQPI+KYVV+KMDEATGRW PAGET+GP T
Sbjct: 4751 VPSPPQGPLRASDVHAEGCTLTWKPPEDDGGQPIDKYVVEKMDEATGRWVPAGETDGPQT 4810

Query: 282  GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
             L+VEGL P HKYKFRVRAVNKQGKSEPL    SIEAKNPF++PGKPGTP + D+D+DFV
Sbjct: 4811 SLQVEGLTPGHKYKFRVRAVNKQGKSEPLAAMQSIEAKNPFDEPGKPGTPVVSDYDSDFV 4870

Query: 342  ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA 401
            EL W  P+++GGSPI GYIIEK++KY+P WEKCA+ EGD  +GKV DL+EG  YEFRV A
Sbjct: 4871 ELQWDRPQEDGGSPITGYIIEKRDKYNPNWEKCAEVEGDVNRGKVNDLVEGIHYEFRVRA 4930

Query: 402  VNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL 461
            VNK GPGEPSD +  H+AR K + P I+R  + D+KV+AG  ++FD+ VIGEP P+KEW 
Sbjct: 4931 VNKAGPGEPSDASKSHLARPKNLPPKIDRKYMLDVKVKAGGFYDFDVPVIGEPPPSKEWS 4990

Query: 462  CNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL---- 517
                 ++S DR KIVN+D +TK++V +++R DSG+YTL  +N  G D  T  V VL    
Sbjct: 4991 LKGTVLLSNDRIKIVNEDYNTKVRVMEARRSDSGVYTLEARNINGKDSATLTVNVLDVPS 5050

Query: 518  --------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTI 563
                          GC+LKW PP+DDGG+ I YY VEKM+T+     ++W+   +   T 
Sbjct: 5051 PPEGPLKIDGVTKNGCNLKWRPPKDDGGSEILYYQVEKMDTEN----MRWVPVAEATSTY 5106

Query: 564  DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVVT----DKPSAPEGPIQ- 616
             +VD+        L      Q+ V A N QG+      ++ +      DKP  P  P+  
Sbjct: 5107 AHVDH--------LIEGHDYQFRVRAVNKQGESLPLTGMDTITAKDPYDKPDKPGTPVAT 5158

Query: 617  -WLLTLTDVTW 626
             W     D+ W
Sbjct: 5159 DWDKDRVDLEW 5169

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026625|ref|XP_003697047.1| PREDICTED: LOW QUALITY PROTEIN: twitchin-like [Apis florea]

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 324/731 (44%), Positives = 417/731 (57%), Gaps = 127/731 (17%)

Query: 8    INTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGG-----------EPLEGYLVEKDRGLD 56
            +  KP  PEGPL+VS++HK+GC LKW +PKDDGG           +P  G  V   R  +
Sbjct: 4516 VTDKPMPPEGPLQVSDVHKEGCKLKWKRPKDDGGTPIEYYQVEKMDPETGCWVPCGRSTE 4575

Query: 57   PE----------------------------------------------GPLEVSNIHKDG 70
            P                                               G L  ++  KD 
Sbjct: 4576 PNLEVSGLTPGKEYLFRVTAVNAEGESKPLEAEQAILAKNPFDEPGKPGDLRATDWDKDH 4635

Query: 71   CTLKWNKPKDDGGEPLEGYLVEKYDP----ETGVWIPVGKTREPEMDVTGLTPGHEYKFR 126
              L W+ P  DGG P+ GY++EK D     E  V +P  +T      V  L  G  Y+FR
Sbjct: 4636 VDLAWSPPISDGGSPITGYIIEKKDKYGEWEKAVEVPAYET---SATVPDLIEGQPYEFR 4692

Query: 127  VKALNKEGESEPLETFSSIIA--RDPYSKYTSVSSLDSHKRSNQP--------------- 169
            V+A+NK G  EP +   +IIA  R+   K    + ++   ++ Q                
Sbjct: 4693 VRAVNKAGPGEPSDPTPTIIAKPRNQAPKIDRTNLIEVRIKAGQNFSFDVKVSGEPPPTT 4752

Query: 170  ---CGSGMVR-----KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
                G   VR     KV+H+DYNT L VRMA RA++G Y++ AENING D   V+V VLD
Sbjct: 4753 KWMLGKREVRPTERIKVKHVDYNTSLSVRMATRAESGKYSIIAENINGVDEAFVKVTVLD 4812

Query: 222  KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
             PSPP GPL+ S+VHAEG TL WK P+DDGGQPI+KYVV+KMDE TGRW PAGET+GP T
Sbjct: 4813 VPSPPQGPLRASDVHAEGCTLTWKPPEDDGGQPIDKYVVEKMDEVTGRWVPAGETDGPQT 4872

Query: 282  GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
             L+VEGL P HKYKFRVRAVNKQGKSEPL    SIEAKNPF++PGKPGTP + D+D+DFV
Sbjct: 4873 SLQVEGLTPGHKYKFRVRAVNKQGKSEPLAAMQSIEAKNPFDEPGKPGTPVVSDYDSDFV 4932

Query: 342  ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA 401
            EL W  P+++GGSPI GYIIEK++KY+P WEKCA+ EGD  +GKV DL+EG  YEFRV A
Sbjct: 4933 ELQWDRPQEDGGSPITGYIIEKRDKYNPNWEKCAEVEGDVNRGKVNDLVEGIHYEFRVRA 4992

Query: 402  VNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL 461
            VNK GPGEPSD +  H+AR K + P I+R  + D+KV+AG  ++FD+ VIGEP PTKEW 
Sbjct: 4993 VNKAGPGEPSDASKSHLARPKNLPPKIDRKYMLDVKVKAGGFYDFDVPVIGEPPPTKEWS 5052

Query: 462  CNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL---- 517
                 ++S DR KIVN+D +TK++V +++R DSG+YTL  KN  G D  T  V VL    
Sbjct: 5053 LKGTVLLSNDRIKIVNEDYNTKVRVMEARRSDSGVYTLEAKNINGRDSATLTVNVLDVPS 5112

Query: 518  --------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTI 563
                          GC+LKW PP+DDGG+ I YY VEKM+T+     ++W+   +   T 
Sbjct: 5113 APEGPLKIDGVTKNGCNLKWRPPKDDGGSEILYYQVEKMDTEN----MRWVPVAEASSTY 5168

Query: 564  DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVVT----DKPSAPEGPIQ- 616
             +VD+        L      Q+ V A N QG+      ++ +      DKP  P  P+  
Sbjct: 5169 AHVDH--------LIEGHDYQFRVRAVNKQGESLPLTGMDTITAKDPYDKPDKPGTPVAT 5220

Query: 617  -WLLTLTDVTW 626
             W     D+ W
Sbjct: 5221 DWDKDRVDLEW 5231

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486445|ref|XP_003425477.1| PREDICTED: twitchin-like [Nasonia vitripennis]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 328/733 (44%), Positives = 416/733 (56%), Gaps = 126/733 (17%)

Query: 8    INTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLE-----------GYLVEKDRGLD 56
            +  KP+ PEGPL V+++HK+GC LKW +P DDGG P+E           G  V   R  D
Sbjct: 4623 VTDKPSAPEGPLSVTDVHKEGCKLKWKRPLDDGGIPIEYYQVDKMDPETGCWVPCGRSTD 4682

Query: 57   P----------------------EGP------------------------LEVSNIHKDG 70
            P                      EG                         LE ++  KD 
Sbjct: 4683 PNLDVTGLTPGKEYKFRVSAVNAEGESEPLVAEQTIIAKNPYDEPDKPTDLEATDWDKDH 4742

Query: 71   CTLKWNKPKDDGGEPLEGYLVEKYDP----ETGVWIPV-GKTREPEMDVTG-LTPGHEYK 124
              LKW+ PK+DGG P+ GY+VEK D     E  + IP  G++  P     G L  G  Y+
Sbjct: 4743 IDLKWSPPKNDGGSPITGYIVEKKDKYGEWEKALEIPAYGESDSPVRATVGDLVEGQPYE 4802

Query: 125  FRVKALNKEGESEPLETFSSIIA--RDPYSKYTSVSSLDSHKRSNQPCG----------- 171
            FRV+A+NK G SEP      IIA  R+   K    + +D   ++ Q  G           
Sbjct: 4803 FRVRAVNKAGPSEPSNQTPVIIAKPRNQAPKIDRTNLIDVKVKAGQNFGFDVKVSGEPAP 4862

Query: 172  -------SGMVR-----KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
                   S  VR     K++ +DYNT+L VRMA RA++G Y + AENINGKD   V+V V
Sbjct: 4863 STRWLLDSKDVRTNERVKIKDVDYNTQLNVRMATRAESGKYQIIAENINGKDVAYVKVTV 4922

Query: 220  LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
            LDKP  P GP+K+++V AEG  L WK P+DDGG PIEKYVV+K+DEATGRW PAGET+GP
Sbjct: 4923 LDKPGTPEGPIKITDVTAEGCKLAWKPPEDDGGCPIEKYVVEKLDEATGRWVPAGETDGP 4982

Query: 280  VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTD 339
             T L+VEGL PNHKYKFRVRAVNKQGK EPLT   SIEAKNPF++PGKPGTP+IKD+D+D
Sbjct: 4983 ETKLKVEGLTPNHKYKFRVRAVNKQGKGEPLTALQSIEAKNPFDEPGKPGTPKIKDYDSD 5042

Query: 340  FVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
            FVEL WT P  +GGSP+ GY+IEK++KYSP WEKCA+ EGD   GKV DL+EG  YEFRV
Sbjct: 5043 FVELEWTRPLTDGGSPVTGYVIEKRDKYSPSWEKCAEIEGDVTSGKVNDLVEGTPYEFRV 5102

Query: 400  LAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 459
             AVNK GPGEPSD T PHIAR K + P I+R  + D+KVRAG  F+FD+ VIGEP P KE
Sbjct: 5103 RAVNKAGPGEPSDATKPHIARPKNLPPKIDRKYMLDVKVRAGGFFDFDVPVIGEPPPKKE 5162

Query: 460  WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-- 517
            W      + S DR KIVN+D +T+++V ++ R DSG YTL  +N+ G D  T +V VL  
Sbjct: 5163 WSLKGNVVTSSDRIKIVNEDYNTRVRVLEALRSDSGEYTLTARNTNGKDSATLRVIVLDV 5222

Query: 518  ----------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRV 561
                            GC L W PP+DDGG+ I  Y +EKM+ ++    ++W+   +   
Sbjct: 5223 PSPPEGPLKIGNVTRNGCKLSWKPPKDDGGSEILNYAIEKMDAES----MRWVPLCESIG 5278

Query: 562  TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD------QVFIEVVVTDKPSAPEGP- 614
            T  ++D+        L       + V A N QG+       +  I V    KP  P  P 
Sbjct: 5279 TTIDIDH--------LIEGHQYSFRVRAVNKQGESAPLNGLESIIAVDPFGKPEKPGTPS 5330

Query: 615  -IQWLLTLTDVTW 626
               W     D+ W
Sbjct: 5331 VTDWDKNRVDLEW 5343

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710146|ref|XP_003244179.1| PREDICTED: twitchin-like [Acyrthosiphon pisum]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 340/811 (41%), Positives = 434/811 (53%), Gaps = 157/811 (19%)

Query: 4    LNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEK---------DRG 54
            +N  +  KP  P GPL+VS+IHK+GC L W +P+DDGG P+E YLVEK           G
Sbjct: 4478 INVTVTDKPTPPVGPLQVSDIHKEGCKLNWKRPEDDGGTPIEYYLVEKFDTQKGSWIPCG 4537

Query: 55   LDPEGPLEVSNI------------------------------------------------ 66
              PE  L V+ +                                                
Sbjct: 4538 RSPETALTVTGLTPGKEYKFRVTAVNAEGESEPLQTVESIVAKNPFDEPGKPGNLEVTDW 4597

Query: 67   HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-----IPVGKTREPEMDVTGLTPGH 121
             K+   LKW  PK+DGG P+ GYL+E  D ++G W     +P  KT      V  L  G 
Sbjct: 4598 DKNFVDLKWIPPKEDGGSPITGYLIEVKD-KSGTWEKALTVPADKTT---ATVPNLVEGE 4653

Query: 122  EYKFRVKALNKEGESEPLETFSSIIAR----DPYSKYTSV-------------------- 157
             Y F+VKA+N  G  E  +  ++I+ +     P+   T++                    
Sbjct: 4654 SYVFQVKAINAAGPGEASDPTNTIVTKPRNMAPHIDRTNLIDIKIKAGQTISYDIKVTGE 4713

Query: 158  -----SSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDS 212
                 + L +HK  +   G G+  K  H+DYNTKL +RMA R D+G YT+TAENINGKD+
Sbjct: 4714 PVPKTNWLKNHK--DIRVGDGV--KQTHVDYNTKLIIRMATREDSGTYTLTAENINGKDT 4769

Query: 213  VEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTP 272
               EV VLDKPS P GPLKVS+VH EG  L WK P+D+GGQPIE Y+++K+DE  GRW P
Sbjct: 4770 AYAEVTVLDKPSAPEGPLKVSDVHGEGCKLSWKPPEDNGGQPIENYIIEKLDEVLGRWVP 4829

Query: 273  AGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPE 332
            AGET+GPVT  +V  LIP HKYKFRV+AVNKQGKS+PLT   SIEAKNPF+ P +P  P 
Sbjct: 4830 AGETDGPVTNFDVTDLIPGHKYKFRVKAVNKQGKSDPLTANQSIEAKNPFDTPSRPSNPI 4889

Query: 333  IKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEG 392
            IKDFD+DFVEL W  P+ +GGSPI GYIIEKK+K+SP W K A+  GD   G V  L EG
Sbjct: 4890 IKDFDSDFVELGWDRPKIDGGSPITGYIIEKKDKFSPTWVKAAEVIGDVNSGIVPGLTEG 4949

Query: 393  NQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG 452
            NQYEFRV AVNK GPGE S+PT PH+AR KK++P+I+R+ LSDIKVRAG+ FEFD+ V G
Sbjct: 4950 NQYEFRVRAVNKAGPGEASEPTLPHLARLKKLAPHIDRNTLSDIKVRAGNMFEFDVKVSG 5009

Query: 453  EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512
            EP PTKEW      ++  +   I+N D STKLKV D+KR D GIY L  KN  G DK   
Sbjct: 5010 EPPPTKEWSLRGDVLVKTESINIINQDHSTKLKVIDAKRSDDGIYYLVAKNIHGMDKAAV 5069

Query: 513  KVTVL------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWI 554
            KVTV+                   C LKWNPP+DDGG+ + +Y+VEKM+TDT    ++W+
Sbjct: 5070 KVTVIDVPQPPEGPLHPTDVTKSSCVLKWNPPKDDGGSEVTHYIVEKMDTDT----LRWV 5125

Query: 555  RTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD---QVFIEVVVTD---KP 608
               D   T   +D+        L       + V A N  G+      F  +   D   KP
Sbjct: 5126 PVGDAAGTTMRIDH--------LIEGHNYNFRVKAVNKIGESLPLTTFDSITAKDPYGKP 5177

Query: 609  SAPEGP--IQWLLTLTDVTW---------EISNYLQELHSSLMPISLESQYLMNDKRVTI 657
              P  P    W     D+ W         EI +Y+ E      P          +K VT+
Sbjct: 5178 DKPGTPQATDWGRNFVDLQWTPPKKDGGSEILSYVIEKREKYGPW---------EKAVTV 5228

Query: 658  DNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
            +     TK ++  L      ++ V A N  G
Sbjct: 5229 NGNK--TKASVPDLTEGHEYEFRVIAVNKGG 5257

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|263359660|gb|ACY70496.1| hypothetical protein DVIR88_6g0033 [Drosophila virilis]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 320/735 (43%), Positives = 410/735 (55%), Gaps = 127/735 (17%)

Query: 4    LNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLE-----------GYLVEKD 52
            +N  I  KP  P GPL++S++HK+GC LKW +P DDGG P+E           GY +   
Sbjct: 4792 INVNITDKPTPPNGPLQISDVHKEGCHLKWKRPNDDGGTPIEYFQIDKLDPETGYWLPCG 4851

Query: 53   RGLDPEGP----------------------------------------------LEVSNI 66
            R  +P+                                                L  ++ 
Sbjct: 4852 RSTEPQADITGLTPGNEYKFRVSAVNAEGESAPLVGEESIIAKNPFDEPGKPENLRATDW 4911

Query: 67   HKDGCTLKWNKPKDDGGEPLEGYLVEKYDP----ETGVWIPVGKTREPEMDVTGLTPGHE 122
             KD   L W  P +DGG P+ GYLVEK D     E  + +P  + +     V  LT G  
Sbjct: 4912 DKDHIDLAWTPPLNDGGSPVTGYLVEKKDKYGQWEKALEVPADQCK---GTVPDLTEGEA 4968

Query: 123  YKFRVKALNKEGESEPLETFSSIIARDPYS--------------KYTSVSSLDSHKRSNQ 168
            Y+FRV A+N  G  EP +  + I+A+                  K     + D  K S +
Sbjct: 4969 YEFRVSAINAAGLGEPSDATAPIVAKSRNKPPVIDRSNLIEVRIKAGQAFTFDC-KISGE 5027

Query: 169  PC------------GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVE 216
            P              S    KV H+DYNTKL V  A R+D+G YTV AEN NG+DS +V+
Sbjct: 5028 PAPKTKWLLKKKEVFSKDNIKVTHIDYNTKLKVTNANRSDSGLYTVHAENYNGEDSADVK 5087

Query: 217  VIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET 276
            V V+DKPSPP GPLKV NVHAEG TL+W  PDDDGGQPIE Y V+KMDEATGRW PAGE+
Sbjct: 5088 VTVIDKPSPPNGPLKVENVHAEGCTLNWNPPDDDGGQPIENYAVEKMDEATGRWVPAGES 5147

Query: 277  EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF 336
             GPVT L+++GL P HKYKFRVRA N+QG S+PLTT  + EAKNP+++P KPGTP IKDF
Sbjct: 5148 HGPVTSLKLKGLTPGHKYKFRVRAKNRQGTSDPLTTHHATEAKNPYDEPTKPGTPSIKDF 5207

Query: 337  DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE 396
            D DFV+L W  PE +GGSPI GYIIEK++KYSP WE CA+ +GD   G V DLIEG +YE
Sbjct: 5208 DKDFVDLEWARPESDGGSPISGYIIEKRDKYSPNWEPCAEIDGDVTSGHVSDLIEGVKYE 5267

Query: 397  FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 456
            FRV AVNK G G PSD T PH+ARAK V+P I+R+ + DIK+RAG+ FEFD+ V GEPIP
Sbjct: 5268 FRVRAVNKAGQGVPSDATEPHVARAKNVAPKIDRNFMLDIKIRAGNVFEFDVPVSGEPIP 5327

Query: 457  TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            +KEW   D  +I+ DR KI N D  TKL++ D+KR D+G YTL  +N  G DK T KVTV
Sbjct: 5328 SKEWTHEDNMVINTDRVKISNYDDRTKLRILDAKRADTGSYTLVARNINGIDKHTVKVTV 5387

Query: 517  L------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTND 558
            L                    +L+W PP+DDGG+ I +Y+VEKM+ +     ++W+   +
Sbjct: 5388 LDVPTAPEGPLRGDEITKNSMTLRWRPPKDDGGSEITHYVVEKMDNEA----MRWVPVGE 5443

Query: 559  KRVT-------IDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
               T       I+N DY     +R + +   +Q   T+     KD         DKP  P
Sbjct: 5444 CAGTEIRADNLIENHDY--NFRVRAVNKQGQSQPLTTSQAITAKDP----YSHPDKPGQP 5497

Query: 612  EGPIQWLLTLTDVTW 626
            +  + W     D+ W
Sbjct: 5498 QA-VDWGKNFVDLEW 5511

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195402301|ref|XP_002059745.1| GJ15760 [Drosophila virilis] gi|194155959|gb|EDW71143.1| GJ15760 [Drosophila virilis]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 320/735 (43%), Positives = 410/735 (55%), Gaps = 127/735 (17%)

Query: 4    LNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLE-----------GYLVEKD 52
            +N  I  KP  P GPL++S++HK+GC LKW +P DDGG P+E           GY +   
Sbjct: 4792 INVNITDKPTPPNGPLQISDVHKEGCHLKWKRPNDDGGTPIEYFQIDKLDPETGYWLPCG 4851

Query: 53   RGLDPEGP----------------------------------------------LEVSNI 66
            R  +P+                                                L  ++ 
Sbjct: 4852 RSTEPQADITGLTPGNEYKFRVSAVNAEGESAPLVGEESIIAKNPFDEPGKPENLRATDW 4911

Query: 67   HKDGCTLKWNKPKDDGGEPLEGYLVEKYDP----ETGVWIPVGKTREPEMDVTGLTPGHE 122
             KD   L W  P +DGG P+ GYLVEK D     E  + +P  + +     V  LT G  
Sbjct: 4912 DKDHIDLAWTPPLNDGGSPVTGYLVEKKDKYGQWEKALEVPADQCK---GTVPDLTEGEA 4968

Query: 123  YKFRVKALNKEGESEPLETFSSIIARDPYS--------------KYTSVSSLDSHKRSNQ 168
            Y+FRV A+N  G  EP +  + I+A+                  K     + D  K S +
Sbjct: 4969 YEFRVSAINAAGLGEPSDATAPIVAKSRNKPPVIDRSNLIEVRIKAGQAFTFDC-KISGE 5027

Query: 169  PC------------GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVE 216
            P              S    KV H+DYNTKL V  A R+D+G YTV AEN NG+DS +V+
Sbjct: 5028 PAPKTKWLLKKKEVFSKDNIKVTHIDYNTKLKVTNANRSDSGLYTVHAENYNGEDSADVK 5087

Query: 217  VIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET 276
            V V+DKPSPP GPLKV NVHAEG TL+W  PDDDGGQPIE Y V+KMDEATGRW PAGE+
Sbjct: 5088 VTVIDKPSPPNGPLKVENVHAEGCTLNWNPPDDDGGQPIENYAVEKMDEATGRWVPAGES 5147

Query: 277  EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF 336
             GPVT L+++GL P HKYKFRVRA N+QG S+PLTT  + EAKNP+++P KPGTP IKDF
Sbjct: 5148 HGPVTSLKLKGLTPGHKYKFRVRAKNRQGTSDPLTTHHATEAKNPYDEPTKPGTPSIKDF 5207

Query: 337  DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE 396
            D DFV+L W  PE +GGSPI GYIIEK++KYSP WE CA+ +GD   G V DLIEG +YE
Sbjct: 5208 DKDFVDLEWARPESDGGSPISGYIIEKRDKYSPNWEPCAEIDGDVTSGHVSDLIEGVKYE 5267

Query: 397  FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 456
            FRV AVNK G G PSD T PH+ARAK V+P I+R+ + DIK+RAG+ FEFD+ V GEPIP
Sbjct: 5268 FRVRAVNKAGQGVPSDATEPHVARAKNVAPKIDRNFMLDIKIRAGNVFEFDVPVSGEPIP 5327

Query: 457  TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            +KEW   D  +I+ DR KI N D  TKL++ D+KR D+G YTL  +N  G DK T KVTV
Sbjct: 5328 SKEWTHEDNMVINTDRVKISNYDDRTKLRILDAKRADTGSYTLVARNINGIDKHTVKVTV 5387

Query: 517  L------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTND 558
            L                    +L+W PP+DDGG+ I +Y+VEKM+ +     ++W+   +
Sbjct: 5388 LDVPTAPEGPLRGDEITKNSMTLRWRPPKDDGGSEITHYVVEKMDNEA----MRWVPVGE 5443

Query: 559  KRVT-------IDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
               T       I+N DY     +R + +   +Q   T+     KD         DKP  P
Sbjct: 5444 CAGTEIRADNLIENHDY--NFRVRAVNKQGQSQPLTTSQAITAKDP----YSHPDKPGQP 5497

Query: 612  EGPIQWLLTLTDVTW 626
            +  + W     D+ W
Sbjct: 5498 QA-VDWGKNFVDLEW 5511

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195172580|ref|XP_002027075.1| GL18185 [Drosophila persimilis] gi|194112853|gb|EDW34896.1| GL18185 [Drosophila persimilis]

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 317/738 (42%), Positives = 410/738 (55%), Gaps = 133/738 (18%)

Query: 4    LNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGG-----------EPLEGYLVEKD 52
            +N +I  KP  P GPL++S++HK+GC LKW +P DDGG           +P  G  +   
Sbjct: 4212 INVVITDKPTPPNGPLQISDVHKEGCHLKWKRPSDDGGTPIEYFQIDKLDPETGCWIPCT 4271

Query: 53   RGLDPEGP----------------------------------------------LEVSNI 66
            R  +P+                                                L  ++ 
Sbjct: 4272 RSTEPQADITGLTPGNEYKFRVSAVNSEGESQPLVGEESIIAKNPFDEPGRPENLRATDW 4331

Query: 67   HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD-----VTGLTPGH 121
             KD   L W  P  DGG P+ GYL+EK D + G W    KT E   D     V  L  G 
Sbjct: 4332 DKDHIDLAWTPPISDGGSPITGYLIEKKD-KYGQW---EKTLEIPADQCNATVPDLIEGQ 4387

Query: 122  EYKFRVKALNKEGESEPLETFSSIIARD---------------------PYSKYTSVSSL 160
             Y+FRV A+N  G  +P +    I+A+                       ++    VS  
Sbjct: 4388 AYEFRVSAVNAAGPGDPSDATPPIVAKSRNKPPIIDRSNLIEVRIKAGQAFTFDCKVSGE 4447

Query: 161  DSHK-----RSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEV 215
             + K     +  + C    V KV H+DYNTKL V  A RAD+G YTV AENING+DS +V
Sbjct: 4448 PAPKTKWLLKKKEVCTKENV-KVSHVDYNTKLKVTSATRADSGLYTVYAENINGEDSADV 4506

Query: 216  EVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE 275
            +V V+DKPSPP GPLKV +VHAEG TL W  PDDDGGQPIE Y+V+K+DE TGRW PAGE
Sbjct: 4507 KVTVIDKPSPPNGPLKVDDVHAEGCTLHWNPPDDDGGQPIENYLVEKLDEVTGRWVPAGE 4566

Query: 276  TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKD 335
            T+GP T  +V+GL P HKYKFRVRA N+QG S+PLTT  + EAKNP+++P KPGTP IKD
Sbjct: 4567 TDGPTTNFKVKGLTPGHKYKFRVRAKNRQGTSDPLTTPHATEAKNPYDEPTKPGTPTIKD 4626

Query: 336  FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY 395
            FD DFV+L W  PE +GGSPI GYIIEK++KYSP WEKCA+  GD P G V DLIEG +Y
Sbjct: 4627 FDKDFVDLEWARPESDGGSPISGYIIEKRDKYSPDWEKCAEVSGDVPNGHVPDLIEGVKY 4686

Query: 396  EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 455
            EFRV AVNK GPG PSD T PH+AR K + P I+R+ +SDIK++AG+ FEF++ VIGEP 
Sbjct: 4687 EFRVRAVNKAGPGIPSDATEPHVARPKNLPPKIDRNFMSDIKIKAGNVFEFNVPVIGEPT 4746

Query: 456  PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515
            P+KEW   D  +I+ DR KI N+D+ TKL++ D+KR DSG YTL  +N+ G D+ T KV 
Sbjct: 4747 PSKEWTHEDSMVINSDRVKISNNDERTKLRILDAKRSDSGAYTLLARNANGVDRHTVKVI 4806

Query: 516  VL------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTN 557
            VL                     L+W PP+DDGG+ I +Y+VEKM+ D     ++W+   
Sbjct: 4807 VLDVPSTPEGPLRPDEVTKNSIGLRWRPPKDDGGSEITHYIVEKMDNDA----MRWVPVG 4862

Query: 558  DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVVT-------DKP 608
            +           T+I    L  +    + V A N QG+ Q    I+ +         DKP
Sbjct: 4863 ECA--------GTEIRADNLIENHDYSFRVRAVNKQGQSQPLGTIQPITAKDPYSHPDKP 4914

Query: 609  SAPEGPIQWLLTLTDVTW 626
              P+  + W     D+ W
Sbjct: 4915 GQPQA-VDWGKDFVDLEW 4931

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198462226|ref|XP_002135661.1| GA22407 [Drosophila pseudoobscura pseudoobscura] gi|198142785|gb|EDY71500.1| GA22407 [Drosophila pseudoobscura pseudoobscura]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 319/739 (43%), Positives = 410/739 (55%), Gaps = 135/739 (18%)

Query: 4    LNRLINTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGG-----------EPLEGYLVEKD 52
            +N +I  KP  P GPL++S++HK+GC LKW +P DDGG           +P  G  +   
Sbjct: 2035 INVVITDKPTPPNGPLQISDVHKEGCHLKWKRPSDDGGTPIEYFQIDKLDPETGCWIPCT 2094

Query: 53   RGLDPEGP----------------------------------------------LEVSNI 66
            R  +P+                                                L  ++ 
Sbjct: 2095 RSTEPQADITGLTPGNEYKFRVSAVNSEGESQPLVGEESIIAKNPFDEPGRPENLRATDW 2154

Query: 67   HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD-----VTGLTPGH 121
             KD   L W  P  DGG P+ GYL+EK D + G W    KT E   D     V  L  G 
Sbjct: 2155 DKDHIDLAWTPPISDGGSPITGYLIEKKD-KYGQW---EKTLEIPADQCNATVPDLIEGQ 2210

Query: 122  EYKFRVKALNKEGESEPLETFSSIIAR--------------DPYSKYTSVSSLDSHKRSN 167
             Y+FRV A+N  G  +P +    I+A+              +   K     + D  K S 
Sbjct: 2211 AYEFRVSAVNAAGPGDPSDATPPIVAKSRNKPPIIDRSNLIEVRIKAGQAFTFDC-KVSG 2269

Query: 168  QP-------------CGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVE 214
            +P             C    V KV H+DYNTKL V  A RAD+G YTV AENING+DS +
Sbjct: 2270 EPAPKTKWLLKKKEVCTKENV-KVSHVDYNTKLKVTSATRADSGLYTVYAENINGEDSAD 2328

Query: 215  VEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAG 274
            V+V V+DKPSPP GPLKV +VHAEG TL W  PDDDGGQPIE Y+V+K+DE TGRW PAG
Sbjct: 2329 VKVTVIDKPSPPNGPLKVDDVHAEGCTLHWNPPDDDGGQPIENYLVEKLDEVTGRWVPAG 2388

Query: 275  ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK 334
            ET+GP T  +V+GL P HKYKFRVRA N+QG S+PLTT  + EAKNP+++P KPGTP IK
Sbjct: 2389 ETDGPTTNFKVKGLTPGHKYKFRVRAKNRQGTSDPLTTPHATEAKNPYDEPTKPGTPTIK 2448

Query: 335  DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQ 394
            DFD DFV+L W  PE +GGSPI GYIIEK++KYSP WEKCA+  GD P G V DLIEG +
Sbjct: 2449 DFDKDFVDLEWARPESDGGSPISGYIIEKRDKYSPDWEKCAEVSGDVPNGHVPDLIEGVK 2508

Query: 395  YEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP 454
            YEFRV AVNK GPG PSD T PH+AR K + P I+R+ +SDIK++AG+ FEF++ VIGEP
Sbjct: 2509 YEFRVRAVNKAGPGIPSDATEPHVARPKNLPPKIDRNFMSDIKIKAGNVFEFNVPVIGEP 2568

Query: 455  IPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514
             P+KEW   D  +I+ DR KI N+D+ TKL++ D+KR DSG YTL  +N+ G D+ T KV
Sbjct: 2569 TPSKEWTHEDSMVINSDRVKISNNDERTKLRILDAKRSDSGAYTLLARNANGVDRHTVKV 2628

Query: 515  TVL------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRT 556
             VL                     L+W PP+DDGG+ I +Y+VEKM+ D     ++W+  
Sbjct: 2629 IVLDVPSTPEGPLRPDEVTKNSIGLRWRPPKDDGGSEITHYIVEKMDNDA----MRWVPV 2684

Query: 557  NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVVT-------DK 607
             +           T+I    L  +    + V A N QG+ Q    I+ +         DK
Sbjct: 2685 GECA--------GTEIRADNLIENHDYSFRVRAVNKQGQSQPLGTIQPITAKDPYSHPDK 2736

Query: 608  PSAPEGPIQWLLTLTDVTW 626
            P  P+  + W     D+ W
Sbjct: 2737 PGQPQA-VDWGKDFVDLEW 2754

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	716
FB|FBgn0005666	8933	bt "bent" [Drosophila melanoga	0.817	0.065	0.430	4.2e-142
WB|WBGene00006759	7158	unc-22 [Caenorhabditis elegans	0.717	0.071	0.372	2.2e-118
UNIPROTKB|Q8T6S9	350	bt "Bent" [Drosophila simulans	0.472	0.965	0.606	5e-115
UNIPROTKB|F1PV45	35	F1PV45 "Uncharacterized protei	0.715	14.62	0.298	7e-76
MGI|MGI:98864	35	Ttn "titin" [Mus musculus (tax	0.814	16.65	0.303	1.9e-69
UNIPROTKB|Q8WZ42	34	TTN "Titin" [Homo sapiens (tax	0.743	15.64	0.294	2.2e-72
ZFIN|ZDB-GENE-030113-2	32	ttna "titin a" [Danio rerio (t	0.921	20.62	0.291	9.8e-63
ZFIN|ZDB-GENE-030616-413	28	ttnb "titin b" [Danio rerio (t	0.664	17.0	0.305	3.6e-64
UNIPROTKB|F1N757	34	F1N757 "Uncharacterized protei	0.722	15.20	0.298	1.8e-68
UNIPROTKB|E1C7I7	843	IGFN1 "Uncharacterized protein	0.364	0.309	0.340	4.1e-36

FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)]

 Score = 1243 (442.6 bits), Expect = 4.2e-142, Sum P(4) = 4.2e-142
 Identities = 277/644 (43%), Positives = 372/644 (57%)

Query:    11 KPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVS-NIHKD 69
             +P KPE  L+ ++  KD   L W  P  DGG P+  Y++EK    D  G  E + ++  D
Sbjct:  4878 EPGKPEN-LKATDWDKDHVDLAWTPPLIDGGSPISCYIIEKQ---DKYGKWERALDVPAD 4933

Query:    70 GCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKA 129
              C  K   P    G+  + + V   +   G   P   T           P  +    V+ 
Sbjct:  4934 QC--KATIPDLVEGQTYK-FRVSAVNA-AGTGEPSDSTPPIIAKARNKPPIIDRSSLVEV 4989

Query:   130 LNKEGESEPLETFSSIIARDP--YSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKL 187
               K G+S    TF   ++ +P   +K+  +   + + + N         KV ++DYNTKL
Sbjct:  4990 RIKAGQSF---TFDCKVSGEPAPQTKWL-LKKKEVYSKDNV--------KVTNVDYNTKL 5037

Query:   188 GVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVP 247
              V  A R+D+G YTV AEN NG+DS +V+V V+DKP+PP GPLKV  +++E  TL W  P
Sbjct:  5038 KVNSATRSDSGIYTVFAENANGEDSADVKVTVIDKPAPPNGPLKVDEINSESCTLHWNPP 5097

Query:   248 DDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKS 307
             DDDGGQPI+ YVV+K+DE TGRW PAGET+GPVT L+V GL P HKYKFRVRA N+QG S
Sbjct:  5098 DDDGGQPIDNYVVEKLDETTGRWIPAGETDGPVTALKVGGLTPGHKYKFRVRAKNRQGTS 5157

Query:   308 EPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY 367
             EPLTT  +I AKNPF+ P KPGTP IKDFD +FV+L WT PE +GGSPI GY++EK++K+
Sbjct:  5158 EPLTTAQAIIAKNPFDVPTKPGTPTIKDFDKEFVDLEWTRPEADGGSPITGYVVEKRDKF 5217

Query:   368 SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 427
             SP WEKCA+   D     V DLIEG +YEFRV AVNK GPG PSD T  H+AR K   P 
Sbjct:  5218 SPDWEKCAEISDDITNAHVPDLIEGLKYEFRVRAVNKAGPGSPSDATETHVARPKNTPPK 5277

Query:   428 INRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF 487
             I+R+ +SDIK++AG+ FEFD+ V GEP+P+K+W      II+ DR KI N D  TK+++ 
Sbjct:  5278 IDRNFMSDIKIKAGNVFEFDVPVTGEPLPSKDWTHEGNMIINTDRVKISNFDDRTKIRIL 5337

Query:   488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCS------------------LKWNPPEDD 529
             D+KR D+G+YTL  +N  GTD+   KVT+L                     L+W PP+DD
Sbjct:  5338 DAKRSDTGVYTLTARNINGTDRHNVKVTILDAPSVPEGPLRNGDVSKNSIVLRWRPPKDD 5397

Query:   530 GGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVT-------IDNVDYFTKITIRPLQRSDT 582
             GG+ I +Y+VEKM+ +     ++W+   D   T       I+N DY     +R + +   
Sbjct:  5398 GGSEITHYVVEKMDNEA----MRWVPVGDCTDTEIRADNLIENHDY--SFRVRAVNKQGQ 5451

Query:   583 AQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTW 626
             +Q   T+     KD         DKP  P+    W     D+ W
Sbjct:  5452 SQPLTTSQPITAKDPYSHP----DKPGQPQAT-DWGKHFVDLEW 5490

GO:0005737 "cytoplasm" evidence=ISS

GO:0004687 "myosin light chain kinase activity" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

WB|WBGene00006759 unc-22 [Caenorhabditis elegans (taxid:6239)]

 Score = 874 (312.7 bits), Expect = 2.2e-118, Sum P(4) = 2.2e-118
 Identities = 211/567 (37%), Positives = 306/567 (53%)

Query:   166 SNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSP 225
             + +P     +R ++  DY T+  +R A R  AG YT+TA N +G D   VEVIVL KPS 
Sbjct:  2424 NEKPVDDQKIR-IESEDYKTRFVLRGATRKHAGLYTLTATNASGSDKHSVEVIVLGKPSS 2482

Query:   226 PGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEV 285
             P GPL+VSNV+ +   L+WKVP+DDGG PI+ Y ++KMD ATGRW P G +E   T   V
Sbjct:  2483 PLGPLEVSNVYEDRADLEWKVPEDDGGAPIDHYEIEKMDLATGRWVPCGRSE--TTKTTV 2540

Query:   286 EGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAW 345
               L P H+YKFRVRAVNK+G+S+PLTT  +I AKNP+  PGK   PE+ D+D D V+LAW
Sbjct:  2541 PNLQPGHEYKFRVRAVNKEGESDPLTTNTAILAKNPYEVPGKVDKPELVDWDKDHVDLAW 2600

Query:   346 TPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG 405
               P+ +GG+PI  ++IEKK+K    WE+     GD     V +L EG +Y+FR+ A NK 
Sbjct:  2601 NAPD-DGGAPIEAFVIEKKDKNGR-WEEALVVPGDQKTATVPNLKEGEEYQFRISARNKA 2658

Query:   406 GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI 465
             G G+PSDP+   +A+ + ++P I+R+ LSD  V+ G+  +F +++ GEP P   W  N  
Sbjct:  2659 GTGDPSDPSDRVVAKPRNLAPRIHREDLSDTTVKVGATLKFIVHIDGEPAPDVTWSFNGK 2718

Query:   466 TIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD---------------KG 510
              I  + + +I N+   ++  +  + R  SG YT+   N  GTD               KG
Sbjct:  2719 GI-GESKAQIENEPYISRFALPKALRKQSGKYTITATNINGTDSVTINIKVKSKPTKPKG 2777

Query:   511 TAKVTVL---GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVD 567
               +VT +     +L W PPEDDGG PIE+Y +EKM T  G + +   R+ D   T+D+  
Sbjct:  2778 PIEVTDVFEDRATLDWKPPEDDGGEPIEFYEIEKMNTKDG-IWVPCGRSGDTHFTVDS-- 2834

Query:   568 YFTKITIRPLQRSDTAQYTVTATNSQG-KDQVFIEVVVT--------DKPSAPEGPIQWL 618
                      L + D  ++ V A NS+G  D +  E  +         D+P  PE P  W 
Sbjct:  2835 ---------LNKGDHYKFRVKAVNSEGPSDPLETETDILAKNPFDRPDRPGRPE-PTDWD 2884

Query:   619 LTLTDVTWEISNYLQELHSSLMPISLE--SQYLMNDKRVTIDNVDYFTKITIRPLQRSDT 676
                 D+ W+    L +  + +    +E  ++Y   +  +T+      T  T+  L  ++ 
Sbjct:  2885 SDHVDLKWDPP--LSDGGAPIEEYQIEKRTKYGRWEPAITVPGGQ--TTATVPDLTPNEE 2940

Query:   677 AQYTVTATNSQG-KDQVFIEVVVTDKP 702
              ++ V A N  G  D       V  KP
Sbjct:  2941 YEFRVVAVNKGGPSDPSDASKAVIAKP 2967

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0031672 "A band" evidence=IDA

UNIPROTKB|Q8T6S9 bt "Bent" [Drosophila simulans (taxid:7240)]

 Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
 Identities = 205/338 (60%), Positives = 260/338 (76%)

Query:   180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEG 239
             ++DYNTKL V  A R+D+G YTV AEN NG+DS +V+V V+DKP+PP GPLKV  +++E 
Sbjct:     1 NVDYNTKLKVNSATRSDSGIYTVFAENANGEDSADVKVTVIDKPAPPNGPLKVDEINSES 60

Query:   240 VTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVR 299
              TL W  PDDDGGQPI+ YVV+K+DEATGRW PAG+T+GPVT L+V+GL P HKYKFRVR
Sbjct:    61 CTLHWNPPDDDGGQPIDNYVVEKLDEATGRWIPAGQTDGPVTALKVKGLTPGHKYKFRVR 120

Query:   300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGY 359
             A N+QG SEPLTTT +I AKNPF++P KPGTP IKDFD +FV+L WT PE +GGSPI GY
Sbjct:   121 AKNRQGTSEPLTTTQAIIAKNPFDEPTKPGTPTIKDFDKEFVDLEWTRPEADGGSPITGY 180

Query:   360 IIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 419
             ++EK++K+SP WEKCA+   D     V DLIEG +YEFRV AVNK GPG PSD T  H+A
Sbjct:   181 VVEKRDKFSPDWEKCAEISDDITNAHVPDLIEGLKYEFRVRAVNKAGPGLPSDATETHVA 240

Query:   420 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 479
             R+K   P I+R+ +SDIK++AG+ FEFD+ V GEP+P+K+W      II+ DR KI N D
Sbjct:   241 RSKNTPPKIDRNFMSDIKIKAGNVFEFDVPVTGEPLPSKDWTHEGNMIINTDRVKISNFD 300

Query:   480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
               TK+++ D+KR D+G+YTL  +N  GTD+ T KVT+L
Sbjct:   301 DRTKIRILDAKRSDTGVYTLTARNINGTDRHTVKVTIL 338

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 526 (190.2 bits), Expect = 7.0e-76, Sum P(4) = 7.0e-76
 Identities = 165/552 (29%), Positives = 261/552 (47%)

Query:   184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLD 243
             N+ L ++ A R D G YTV   N  G+ +  + VIVLDKP PP GP+K+  V A+ +TL 
Sbjct: 23957 NSLLTIKEACREDVGHYTVKLTNSAGEATETLNVIVLDKPGPPTGPVKMDEVTADSITLS 24016

Query:   244 WKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNK 303
             W  P  DGG  I  Y+V+K D +T  W     T    T ++   L    +Y+FR+ A N+
Sbjct: 24017 WGPPKYDGGSSINNYIVEKRDTSTTTWQIVSATVARTT-IKACRLKTGCEYQFRIAAENR 24075

Query:   304 QGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEK 363
              GKS  L +   I A+ PF  PG PGTP +  F  D +E+ W  P  +GGS ++GY +E+
Sbjct: 24076 YGKSTYLNSEPVI-AQYPFKVPGPPGTPFVTLFSKDSMEVQWNEPVSDGGSRVIGYHLER 24134

Query:   364 KEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 423
             KE+ S +W K  +T     K K   L EG +YEFRV A N  G G+PS  +  ++AR   
Sbjct: 24135 KERNSILWVKLNKTPIPQTKFKTTGLDEGIEYEFRVSAENIVGIGKPSKVSECYMARDPC 24194

Query:   424 VSP------YINRD----QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF 473
               P       + R+    Q        GS     I V  + +P   W+    T +   +F
Sbjct: 24195 DPPGRPEAIIVTRNSVTLQWKKPTYDGGSKITGYI-VEKKELPDGRWMKASFTNVIDTQF 24253

Query:   474 KIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGG 531
             ++    +D+  + +V    R  +G+++   + S  T   TA+  V    +  +P   D  
Sbjct: 24254 EVTGLVEDQRYEFRVI--ARNAAGVFS---EPSESTGAITARDEVDPPRISMDPKYKD-- 24306

Query:   532 APIEYYMVEKMETDT---GKVL--IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSD 581
               I  +  E  + D    GK +  I+W++     +N  R+ I + D+ T ++++   R D
Sbjct: 24307 -TIVLHAGESFKIDADIHGKPIPTIQWVKGDQELSNTARLEIKSTDFATSLSVKDAVRID 24365

Query:   582 TAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWL-LTLTDVTWEISNYLQELHSSLM 640
             +  Y + A N  G+  V + V V D+P  PEGP+    +T    T      LQ+  S ++
Sbjct: 24366 SGNYILKAKNVAGERSVTVNVKVLDRPGPPEGPVVVSGVTAEKCTLAWKPPLQDGGSDII 24425

Query:   641 PISLESQYLMNDKRVTID-NVDYFT-KITIRPLQRSDTAQYTVTATNSQGKDQVF-IEVV 697
                +E +         +D NV   + K+T + L+ ++   + + A N  G  +    E V
Sbjct: 24426 NYIVERRETSRLVWTLVDANVQTLSYKVT-KLLEGNEYI-FRIMAVNKYGVGEPLESEPV 24483

Query:   698 VTDKPSA-PEGP 708
             +   P   P+ P
Sbjct: 24484 IAKNPFVVPDAP 24495

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)]

 Score = 559 (201.8 bits), Expect = 1.9e-69, Sum P(4) = 1.9e-69
 Identities = 194/639 (30%), Positives = 290/639 (45%)

Query:    12 PAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGC 71
             P  P G  EV ++ ++  TL W +PK DGG  L GY+VEK R L  +  ++ ++++   C
Sbjct: 22062 PIDPPGKPEVISVTRNSVTLIWTEPKYDGGHKLTGYIVEK-RDLPSKSWMKANHVNVPDC 22120

Query:    72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR------EPEMDVTGLTPGHEYKF 125
                     + GG+  E + +   +    +  P   T       E E     L P  +   
Sbjct: 22121 AFTVTDLVE-GGK-YE-FRIRAKNTAGAISAPSESTGTIICKDEYEAPTIVLDPTIKDGL 22177

Query:   126 RVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNT 185
              VKA    G+S  L   S I+ + P  K        S  R+ +      + ++     ++
Sbjct: 22178 TVKA----GDSIVLSAIS-ILGK-PLPK-------SSWSRAGKDIRPSDIAQITSTPTSS 22224

Query:   186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWK 245
              L V+ A R DAG YT+TA N  G     V+V VLD P PPG P+++SNV AE  TL W 
Sbjct: 22225 MLTVKYATRKDAGEYTITATNPFGTKEEHVKVSVLDVPGPPG-PIEISNVSAEKATLTWT 22283

Query:   246 VPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG 305
              P +DGG PI+ YV++K + +   WT   E       + V  LI  ++Y FRV AVN  G
Sbjct: 22284 PPLEDGGSPIKAYVLEKRETSRLLWTVVSEDIQACRHV-VTKLIQGNEYLFRVSAVNHYG 22342

Query:   306 KSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKE 365
             K EP+ +   ++  + F  PG PG PEI +   +   ++W  P  +GGS I GY +E++E
Sbjct: 22343 KGEPVQSEP-VKMVDRFGPPGPPGKPEISNVTKNTATVSWKRPTDDGGSEITGYHVERRE 22401

Query:   366 KYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR--AKK 423
             K    W +  +T     + KV  L EGN YEFRV A N+ G G PSD + P + +  A  
Sbjct: 22402 KKGLRWVRATKTPVSDLRCKVTGLQEGNTYEFRVSAENRAGIGPPSDASNPVLMKDVAYP 22461

Query:   424 VSPYINRDQLSDIKVRAGS------NFEFDINVIG-----EPIPTKEWLCNDITIISKDR 472
               P  N   ++D   ++ S      +++  + + G     + +    W+  D T  +   
Sbjct: 22462 PGPPSNA-HVTDTTKKSASLAWGKPHYDGGLEITGYVVEHQKVGDDAWI-KDTTGTALRI 22519

Query:   473 FKIVNDDKSTKLKV-FD-SKRGDSGIYTLAV-KNSWGTDKGTAKVTVLGCSLKWNPPEDD 529
              + V  D  TK K  F  S   D+G+   AV  N    +K  A    L   L+       
Sbjct: 22520 TQFVVPDLQTKEKYNFRISAINDAGVGEPAVIPNVEIVEKEVAPDFELDAELR-RTLVVR 22578

Query:   530 GGAPIEYYMVEKMETDTGKVLIKWIRTN---DKRVTIDNVDYFTKITIRPLQRSDTAQYT 586
              G  I  ++  K         + W + N     R  I+N + FT + I    R DT ++ 
Sbjct: 22579 AGLSIRIFVPIKGRPAPE---VTWTKDNINLKHRANIENTESFTLLIIPECNRYDTGKFV 22635

Query:   587 VTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT 625
             +T  N  GK   F+ V V D P    GP+  L   TD+T
Sbjct: 22636 MTIENPAGKKSGFVNVRVLDTP----GPVLNLRP-TDIT 22669

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0003300 "cardiac muscle hypertrophy" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=TAS

GO:0005865 "striated muscle thin filament" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IMP

GO:0007512 "adult heart development" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030017 "sarcomere" evidence=IDA

GO:0030018 "Z disc" evidence=ISO;IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=ISO

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=ISO

GO:0030506 "ankyrin binding" evidence=IPI

GO:0031430 "M band" evidence=ISO;IDA

GO:0031433 "telethonin binding" evidence=ISO

GO:0031672 "A band" evidence=IDA

GO:0031674 "I band" evidence=ISO;IDA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0042805 "actinin binding" evidence=ISO

GO:0043056 "forward locomotion" evidence=IMP

GO:0043621 "protein self-association" evidence=ISO

GO:0045214 "sarcomere organization" evidence=ISO;IMP;TAS

GO:0045859 "regulation of protein kinase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=ISO

GO:0048769 "sarcomerogenesis" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

GO:0051371 "muscle alpha-actinin binding" evidence=ISO

GO:0051592 "response to calcium ion" evidence=ISO

GO:0055002 "striated muscle cell development" evidence=IMP

GO:0055003 "cardiac myofibril assembly" evidence=ISO;IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)]

 Score = 520 (188.1 bits), Expect = 2.2e-72, Sum P(4) = 2.2e-72
 Identities = 169/573 (29%), Positives = 260/573 (45%)

Query:   163 HKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
             HK  N P         +  + N+ L ++ A R D G Y V   N  G+    + VIVLDK
Sbjct: 23109 HK-DNVPLKQTTRVNAESTENNSLLTIKDACREDVGHYVVKLTNSAGEAIETLNVIVLDK 23167

Query:   223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
             P PP GP+K+  V A+ +TL W  P  DGG  I  Y+V+K D +T  W     T    T 
Sbjct: 23168 PGPPTGPVKMDEVTADSITLSWGPPKYDGGSSINNYIVEKRDTSTTTWQIVSATVARTT- 23226

Query:   283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE 342
             ++   L    +Y+FR+ A N+ GKS  L +  ++ A+ PF  PG PGTP +     D +E
Sbjct: 23227 IKACRLKTGCEYQFRIAAENRYGKSTYLNSEPTV-AQYPFKVPGPPGTPVVTLSSRDSME 23285

Query:   343 LAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV 402
             + W  P  +GGS ++GY +E+KE+ S +W K  +T     K K   L EG +YEFRV A 
Sbjct: 23286 VQWNEPISDGGSRVIGYHLERKERNSILWVKLNKTPIPQTKFKTTGLEEGVEYEFRVSAE 23345

Query:   403 NKGGPGEPSDPTAPHIARAKKVSP------YINRD----QLSDIKVRAGSNFEFDINVIG 452
             N  G G+PS  +  ++AR     P       + R+    Q        GS     I V  
Sbjct: 23346 NIVGIGKPSKVSECYVARDPCDPPGRPEAIIVTRNSVTLQWKKPTYDGGSKITGYI-VEK 23404

Query:   453 EPIPTKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510
             + +P   W+    T I    F++    +D   + +V    R  +G+++   + S  T   
Sbjct: 23405 KELPEGRWMKASFTNIIDTHFEVTGLVEDHRYEFRVI--ARNAAGVFS---EPSESTGAI 23459

Query:   511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDT---GKVL--IKWIR-----TNDKR 560
             TA+  V    +  +P   D    I  +  E  + D    GK +  I+WI+     +N  R
Sbjct: 23460 TARDEVDPPRISMDPKYKD---TIVVHAGESFKVDADIYGKPIPTIQWIKGDQELSNTAR 23516

Query:   561 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWL-L 619
             + I + D+ T ++++   R D+  Y + A N  G+  V + V V D+P  PEGP+    +
Sbjct: 23517 LEIKSTDFATSLSVKDAVRVDSGNYILKAKNVAGERSVTVNVKVLDRPGPPEGPVVISGV 23576

Query:   620 TLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTID-NVDYFT-KITIRPLQRSDTA 677
             T    T      LQ+  S ++   +E +         +D NV   + K+T   L   +  
Sbjct: 23577 TAEKCTLAWKPPLQDGGSDIINYIVERRETSRLVWTVVDANVQTLSCKVT--KLLEGNEY 23634

Query:   678 QYTVTATNSQGKDQVF-IEVVVTDKPSA-PEGP 708
              + + A N  G  +    E VV   P   P+ P
Sbjct: 23635 TFRIMAVNKYGVGEPLESEPVVAKNPFVVPDAP 23667

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0031430 "M band" evidence=IEA;IDA

GO:0043056 "forward locomotion" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=NAS;TAS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0002020 "protease binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030049 "muscle filament sliding" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0051592 "response to calcium ion" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0048739 "cardiac muscle fiber development" evidence=IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0055003 "cardiac myofibril assembly" evidence=IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0007076 "mitotic chromosome condensation" evidence=IEP

GO:0051015 "actin filament binding" evidence=IDA

GO:0042805 "actinin binding" evidence=IDA;IPI

GO:0050790 "regulation of catalytic activity" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=IMP

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

GO:0035995 "detection of muscle stretch" evidence=TAS

GO:0031433 "telethonin binding" evidence=ISS;IPI

GO:0003300 "cardiac muscle hypertrophy" evidence=IMP

GO:0048769 "sarcomerogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

ZFIN|ZDB-GENE-030113-2 ttna "titin a" [Danio rerio (taxid:7955)]

 Score = 550 (198.7 bits), Expect = 9.8e-63, Sum P(3) = 9.8e-63
 Identities = 215/737 (29%), Positives = 318/737 (43%)

Query:    12 PAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVS--NIHKD 69
             P  P   ++++ + K+  TL W  PK+DGG P++ Y++E+    D  GP + +    +K 
Sbjct: 15784 PPDPPTKVKINLVTKNTVTLTWVPPKNDGGAPVKHYIIER-LSWDTSGPQKETWKQCNKR 15842

Query:    70 GC--TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRV 127
                 T    +   +GGE  E + V+  + E G   P   T  P + +   T       R 
Sbjct: 15843 DVEETTFIIEDLKEGGE-YE-FRVKAVN-EAGASRP-SVTAGPIV-IKDQTCAPSIDLR- 15896

Query:   128 KALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKR-SNQPCGSGMVRKVQHL----- 181
             +AL  EG +E  +   +I+AR     + S   L  HK   ++P     V+  +H+     
Sbjct: 15897 EAL--EG-AEGFDV--NIVARIQGCPFPS---LVWHKAPQDKPDDKVPVQYDKHVNKLVS 15948

Query:   182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVT 241
             D    L ++ ++R D+  YT+TA N  G  +  +++ +L +P  P GP+K+  V AE + 
Sbjct: 15949 DEKCSLFIQQSKRDDSAMYTLTATNSLGTATKSIKLSILGRPGVPVGPIKIGEVFAERIG 16008

Query:   242 LDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV 301
             L W  P DDGG  I  YVV+K +E    W            + V+ L   H+Y+FRV A 
Sbjct: 16009 LSWNPPADDGGSKITNYVVEKREENRKTWVHVSSDPKECQYI-VQRLTEGHEYEFRVMAQ 16067

Query:   302 NKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYII 361
             NK G   PL +    +A+N F  PG P TP++ D     V+L W PP  +GGS I GY +
Sbjct: 16068 NKYGVGPPLYSEPE-KARNLFTPPGPP-TPKVTDCTKSTVDLEWIPPLNDGGSMITGYFV 16125

Query:   362 EKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 421
             E K++    WEK    E    K  V  L E   Y FRV AVN  G GEP +       + 
Sbjct: 16126 EYKQEGQEEWEKVKDKEIRGTKFVVPGLKELGLYRFRVRAVNAAGVGEPGEVADVIEVKD 16185

Query:   422 KKVSPYINRDQL--SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 479
             + + P ++ D      I V AG        V G+P P   W  +D  +  K+   +    
Sbjct: 16186 RTIPPEVDLDATVKEKIVVHAGGVIRILAYVSGKPAPEIIWNRDDAEL-PKEA-AVETTS 16243

Query:   480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL------------------GCSL 521
              S+ L +    R   GIYTL  KN+ G  K    V VL                   C L
Sbjct: 16244 ISSALVIKSCLRQHQGIYTLTAKNAGGERKKAVIVEVLDVPGPVGLPFSGENLTNDSCKL 16303

Query:   522 KWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSD 581
              W  PEDDGG+ I  Y++EK E D       W       VT  N        ++ L    
Sbjct: 16304 TWYSPEDDGGSAITNYIIEKREADRRG----WTSVT-YTVTRHNA------VVQGLIDGK 16352

Query:   582 TAQYTVTATNSQGKDQVFIE----VVVTDKPSAPEGPIQWLLT-LTD----VTWEISNYL 632
                + + A N  G    F E    VV+ D  S PE P    +T +T+    V W    Y 
Sbjct: 16353 GYFFRIAAENIIGMGP-FTETAAPVVIKDPLSVPERPEDVEVTAITNDSISVAWRSPKYD 16411

Query:   633 --QELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS--QG 688
                ++ S ++ + L  Q   N  R+  ++     K T   L+   + ++ V+A N   QG
Sbjct: 16412 GGSDITSYVLEVRLIGQD--NFSRIAKEDKLMDRKFTHAGLKEGSSYEFRVSAVNQIGQG 16469

Query:   689 KDQVFIEVVVTDKPSAP 705
             K     + V   K   P
Sbjct: 16470 KPSFSTKPVTCKKEFEP 16486

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IMP

GO:0060047 "heart contraction" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-030616-413 ttnb "titin b" [Danio rerio (taxid:7955)]

 Score = 532 (192.3 bits), Expect = 3.6e-64, Sum P(4) = 3.6e-64
 Identities = 159/520 (30%), Positives = 238/520 (45%)

Query:    57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT---REPEMD 113
             P G  E+  + KD  T++W KP++DGG  +  YL+E  + ++  WI V +    ++    
Sbjct: 24978 PPGAPEILAVGKDFATIEWLKPENDGGSEITNYLIEFRERKSVRWIKVNRDSILKDTSFK 25037

Query:   114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSG 173
             VTGL  G+ Y+FR+ A+N  G  +P  T   +I  D + +  S++     +        G
Sbjct: 25038 VTGLHEGNIYQFRITAMNAAGAPDP-PTIPRVI--DTHKESISLAWTRPIEDGGADV-IG 25093

Query:   174 MVRKVQHLDYN--TKL---GVRMAQRADAG-------FYTVTAENING----KDS-VEVE 216
              V ++Q       TK+    +R+ +    G       ++ V A N+NG     D   E E
Sbjct: 25094 YVLEMQEAGAEEWTKVHEKNLRVTEHTVTGLLSGKKYYFRVAAVNVNGIGDFSDPCAETE 25153

Query:   217 VIV-LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE 275
              +  +D P PPG P+K+  +  +   + W  P+ DGG P+  Y++++  EA+ R      
Sbjct: 25154 PVERIDTPGPPG-PIKMKELTKDSAHITWDAPEVDGGAPVNNYIIERR-EASMRAYKTVT 25211

Query:   276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKD 335
             ++   T  ++ GL     Y FRV   N  G  EP  T   +        P  P   E+ D
Sbjct: 25212 SKCSKTSYKITGLTEGMLYYFRVLPENIYGIGEPCETGDVVLV---CEVPLPPAKLEVVD 25268

Query:   336 FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY 395
                  V LAW  P  +GGS I GYIIE  +  +  W K A  +    +  V+ L E  QY
Sbjct: 25269 VTKSTVSLAWEKPLHDGGSRITGYIIEACKAGTDKWMKVATLKLTDFEFTVVSLNETEQY 25328

Query:   396 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSD--IKVRAGSNFEFDINVIGE 453
              FRV AVN  GPGEP +       + ++V P ++   +    I V AG   + D+ +IG 
Sbjct: 25329 LFRVRAVNSRGPGEPKEIVTAVTVQEQRVMPKVDFSAIPQKMISVLAGKPLDLDLPIIGR 25388

Query:   454 PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 513
             P P   W  ND  +   +R KI +  K +KL + D+   DSG+YTL VKN  G      K
Sbjct: 25389 PPPVCSWFFNDNRLKIVERVKIKSTGKFSKLTILDTTIDDSGVYTLEVKNVTGVITENIK 25448

Query:   514 VTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKW 553
             V +L       P E  G  PI +      E D   V I W
Sbjct: 25449 VIILS-----KPDEPQG--PIRFD-----EIDATSVTISW 25476

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0014866 "skeletal myofibril assembly" evidence=IMP

UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 519 (187.8 bits), Expect = 1.8e-68, Sum P(4) = 1.8e-68
 Identities = 162/542 (29%), Positives = 250/542 (46%)

Query:   185 TKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDW 244
             +KL +R A   D G Y++T EN  G  +V V+V+VLDKP PP   L+VS +  +   L W
Sbjct: 18214 SKLEIRNAAHEDGGIYSLTVENPAGSKTVSVKVLVLDKPGPPRD-LEVSEIRKDSCYLTW 18272

Query:   245 KVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQ 304
             K P DDGG  I  YVV++ D A+  W+P   T    + L  + L   ++Y FRV A N+ 
Sbjct: 18273 KEPLDDGGSVITNYVVERKDVASTEWSPLSTTSKKKSHL-AKHLNEGNQYVFRVAAENQY 18331

Query:   305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK 364
             G+   + T   I+A +P + PG P      D D   V L W  P+++GGSPI GY++E +
Sbjct: 18332 GRGPFVETPKPIKAVDPLHPPGPPKNLHHVDVDKTEVSLVWNKPDRDGGSPITGYLVEYQ 18391

Query:   365 EKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKV 424
             E+ +P W K  +T  +     V  L +G  Y FRV A N  G G P D T P   + K V
Sbjct: 18392 EEGTPDWIKF-KTVTNLAC-VVTGLQQGKTYRFRVKAENIVGLGLP-DTTIPIECQEKLV 18448

Query:   425 SPYINRDQ--LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
              P +  D   +  + V+AG+   F   + G PIPT +W  +   I + + + +  D+ S+
Sbjct: 18449 PPSVELDVKLIEGLVVKAGTTVRFPAIIRGVPIPTAKWTTDGNEIKTDEHYTVETDNFSS 18508

Query:   483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
              L + +  R D+G Y + V N+ GT      +TVL        P +      EY  +  +
Sbjct: 18509 VLTIKNCLRKDTGEYQITVSNAAGTKTVAVHLTVLDVPGPPTGPINILEVTPEYMTISWL 18568

Query:   543 --ETDTGKVLIKWI--RTNDKRVT---IDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK 595
               + D G  +I +I  + + K+ T   + +    TK+ +  LQ+     + V A N  G 
Sbjct: 18569 PPKDDGGSPVINYIVEKKDTKKDTWGVVSSGSSKTKLKVPHLQKGYEYVFRVKAENKIGI 18628

Query:   596 DQVF--IEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYL---- 649
                   +  V   K S P  P + ++T  D+T   +     L  S     +   YL    
Sbjct: 18629 GPPLDSVPTVAKHKFSPPSPPGKPVVT--DITENAATVAWTLPKSDGGSPITGYYLERRE 18686

Query:   650 MNDKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKD--QVFIEVVVTDKPSAPE 706
             +  K V ++       K  +  L   +T ++ V A N  G        + +   +P  P 
Sbjct: 18687 VTGKWVRVNKTPLVDLKFRVTGLYEGNTYEFRVFAENLAGLSGPSPSSDPIKACRPIKPP 18746

Query:   707 GP 708
             GP
Sbjct: 18747 GP 18748

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048769 "sarcomerogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043056 "forward locomotion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005865 "striated muscle thin filament" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003300 "cardiac muscle hypertrophy" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1C7I7 IGFN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 415 (151.1 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
 Identities = 91/267 (34%), Positives = 132/267 (49%)

Query:   177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVH 236
             +V   D  T L +  A+R D G Y V  +N +G   ++++V V+DKP PP GP+K+    
Sbjct:   190 RVDKTDTFTMLSISNAERKDCGDYKVRLKNDSGILDIDLKVEVIDKPQPPAGPMKIVESS 249

Query:   237 AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKF 296
             A  VT+ W  P DDGG+P++ Y+++K       W   GET    T      +  +  Y F
Sbjct:   250 ANDVTIQWNPPKDDGGKPVQNYIIEKQQVGKSDWVAVGETPRSCTTFTTSKVEQDMSYYF 309

Query:   297 RVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPI 356
             RVRAVN +G S+ L +   +        PG P  PEI     D + ++W  P + G S I
Sbjct:   310 RVRAVNAEGTSDALESDEVVTISK--GSPGAPDPPEIIGVSKDTITISWKTPRRAGSSRI 367

Query:   357 VGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
              GYI++K++  S  W           K K+ DL +G QYEF V AVN  G G+ S P+  
Sbjct:   368 SGYIVQKRKMGSMTWVPVNSVPVADKKLKITDLKKGLQYEFCVAAVNASGIGDMSAPSQS 427

Query:   417 HIARAKKVSPYINRDQLSDIKVRAGSN 443
               AR     P     ++ D+K+    N
Sbjct:   428 VFARDSTTPP----GKVRDLKMTINDN 450

GO:0005634 "nucleus" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	716
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	2e-19
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	5e-19
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-17
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	6e-17
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	5e-13
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	8e-13
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	1e-12
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-12
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-12
smart00409	85	smart00409, IG, Immunoglobulin	3e-12
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	2e-11
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	1e-10
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	3e-09
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-08
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-08
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	5e-07
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-06
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-06
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	4e-06
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	5e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-05
smart00409	85	smart00409, IG, Immunoglobulin	3e-05
COG4733	952	COG4733, COG4733, Phage-related protein, tail comp	5e-05
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-05
smart00409	85	smart00409, IG, Immunoglobulin	6e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	7e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	8e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.001
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.002
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	0.002
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	0.003

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 82.9 bits (205), Expect = 2e-19
 Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P    + D  +  V L+WTPPE +GG PI GY++E +EK S  W++   T G     
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEVEVTPGSETSY 59

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            +  L  G +YEFRV AVN GG   PS+  
Sbjct: 60  TLTGLKPGTEYEFRVRAVNGGGESPPSESV 89

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 82.2 bits (203), Expect = 5e-19
 Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           PSPP   L+V++V +  VTL W  P+DDGG PI  YVV+  ++ +G W     T G  T 
Sbjct: 1   PSPPTN-LRVTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEVEVTPGSETS 58

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
             + GL P  +Y+FRVRAVN  G+S P  + 
Sbjct: 59  YTLTGLKPGTEYEFRVRAVNGGGESPPSESV 89

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 26/85 (30%), Positives = 44/85 (51%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           +  D++V+ G +  F   V G+P PT  W  +   + S DRFK+  +  +  L + + + 
Sbjct: 6   KPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQP 65

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            D G YT    NS G  + +A++TV
Sbjct: 66  DDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 76.0 bits (187), Expect = 6e-17
 Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR--EPEM 112
           P  P  L V+++     TL W  P+DDGG P+ GY+VE  +  +G W  V  T   E   
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEVEVTPGSETSY 59

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLETFS 143
            +TGL PG EY+FRV+A+N  GES P E+ +
Sbjct: 60  TLTGLKPGTEYEFRVRAVNGGGESPPSESVT 90

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 64.6 bits (157), Expect = 5e-13
 Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQ-NGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
           P  P    + D  +  V L+W PP        IVGY +E +E+ S  W++   T   T  
Sbjct: 1   PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSE-WKEVNVTPSST-S 58

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPG 408
             +  L  G +YEFRV AVN  G G
Sbjct: 59  YTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 64.2 bits (156), Expect = 8e-13
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE---KYDPETGVWIPV-GKTREPE 111
            P   L V+++     TL W  P DDG     GY+V    +Y  E   W  V        
Sbjct: 2   SPPSNLRVTDVTSTSVTLSWEPPPDDGIT---GYIVGYRVEYREEGSEWKEVNVTPSSTS 58

Query: 112 MDVTGLTPGHEYKFRVKALNKEGES 136
             +TGL PG EY+FRV+A+N  GE 
Sbjct: 59  YTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 63.4 bits (154), Expect = 1e-12
 Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQ-PIEKYVVDKMDEATGRWTPAGETEGPVT 281
           PSPP   L+V++V +  VTL W+ P DDG    I  Y V +  E    W          T
Sbjct: 1   PSPPSN-LRVTDVTSTSVTLSWEPPPDDGITGYIVGYRV-EYREEGSEWKEV-NVTPSST 57

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKS 307
              + GL P  +Y+FRVRAVN  G+ 
Sbjct: 58  SYTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 23/74 (31%), Positives = 35/74 (47%)

Query: 443 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK 502
           +   ++ + G P PT  W  +   +    R +I     ST L + +++R DSG YTL +K
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK 60

Query: 503 NSWGTDKGTAKVTV 516
           N  G    T  V V
Sbjct: 61  NPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT-IISKDRFKIVNDDKSTKLKVFDSKRG 492
             + V+ G +        G P P   W       +    RF +     ++ L + +    
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 493 DSGIYTLAVKNSWGTDKGTAKVTV 516
           DSG YT A  NS G+      +TV
Sbjct: 62  DSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT-IISKDRFKIVNDDKSTKLKVFDSKRG 492
             + V+ G +        G P P   W       +    RF +     ++ L + +    
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 493 DSGIYTLAVKNSWGTDKGTAKVTV 516
           DSG YT A  NS G+      +TV
Sbjct: 62  DSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGK 385
             P    + D  +  + L+W+PP  NG  PI GY +E +        K     G T    
Sbjct: 1   SAPTNLTVTDVTSTSLTLSWSPPPGNG--PITGYEVEYRPVNGGEEWKEITVPGTTTSYT 58

Query: 386 VLDLIEGNQYEFRVLAVNKGGPGEPS 411
           +  L  G +YE RV AVN  G G PS
Sbjct: 59  LTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
           S P   L V++V +  +TL W  P  +G  PI  Y V+      G         G  T  
Sbjct: 1   SAPTN-LTVTDVTSTSLTLSWSPPPGNG--PITGYEVEYRPVNGGEEWKEITVPGTTTSY 57

Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEP 309
            + GL P  +Y+ RV+AVN  G+  P
Sbjct: 58  TLTGLKPGTEYEVRVQAVNGAGEGPP 83

Length = 84

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG---VWIPVGKTREPEM 112
                L V+++     TL W+ P  +G  P+ GY VE      G     I V  T     
Sbjct: 1   SAPTNLTVTDVTSTSLTLSWSPPPGNG--PITGYEVEYRPVNGGEEWKEITVPGT-TTSY 57

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEP 138
            +TGL PG EY+ RV+A+N  GE  P
Sbjct: 58  TLTGLKPGTEYEVRVQAVNGAGEGPP 83

Length = 84

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 556 TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
               RV I+     T + I+  +RSD+ +YT+T  N  G+    I V V
Sbjct: 26  KLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
           L    RV I+     T + I+  +RSD+ +YT+T  N  G+    I V V
Sbjct: 25  LKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W +      +  R  +        +TI  +Q  D  +YT  ATNS G+ +   E+ V
Sbjct: 32  VSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
           +  R  +        +TI  +Q  D  +YT  ATNS G+ +   E+ V
Sbjct: 43  SSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 14/38 (36%), Positives = 24/38 (63%)

Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
             +T L ++ A+R+D+G YT+T +N  G+ S  + V V
Sbjct: 37  ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDS 494
           D+KVRAG + E    V G    T  W+     I   +  KI N + S+KL + + ++   
Sbjct: 9   DMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHC 68

Query: 495 GIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPP 526
           G YTL V+N  G+ +    +TV+    K +PP
Sbjct: 69  GCYTLEVENKLGSRQAQVNLTVVD---KPDPP 97

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKRGDS 494
           I V AG+    D+ + GEP PT  W   D     ++ R ++ +    +   +  ++R D 
Sbjct: 5   IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDE 64

Query: 495 GIYTLAVKNSWGTDKGTAKVTV 516
           G+YT+ V N  G D  +  V V
Sbjct: 65  GVYTITVTNPVGEDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 551 IKWIRTNDK------RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W +   K      R ++      + +TI  +   D+  YT  ATNS G       + V
Sbjct: 26  VTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 551 IKWIRTNDK------RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W +   K      R ++      + +TI  +   D+  YT  ATNS G       + V
Sbjct: 26  VTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|227076 COG4733, COG4733, Phage-related protein, tail component [Function unknown]

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 45/233 (19%), Positives = 62/233 (26%), Gaps = 37/233 (15%)

Query: 225 PPG-GPLKVSNVHAEGVTLD---WKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
           PPG      +      + L           GG+              G W  A  T    
Sbjct: 603 PPGVQIPTTNVSIDSFLNLVQGLATTLLKVGGEAFL-AAWAYEAGWDGNWITAPRT--SA 659

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDF 340
            G +VEG IP  +Y  RVRA+N    + P  T            P K           D 
Sbjct: 660 AGFDVEG-IPAGQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIY-------DA 711

Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYS---PIWEKCAQTEGDTPKGKV--LDLIEGNQY 395
           V +         G P     I   E  S         A++ G+     +  + +  G  +
Sbjct: 712 VIITLV-IRLVVGDPTGAVDITSTEIRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTF 770

Query: 396 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDI 448
            FR   V+  G                    +    Q S    R       DI
Sbjct: 771 WFRNRNVDLVG----------------NNDKWEVYGQSSRDASRILELIGDDI 807

Length = 952

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 647 QYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
           + L    R ++      + +TI  +   D+  YT  ATNS G       + V
Sbjct: 34  KLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 647 QYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
           + L    R ++      + +TI  +   D+  YT  ATNS G       + V
Sbjct: 34  KLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 446 FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 505
           F+  V G+P PT +W+ N   +I  D FKIV +     L+V    + D G Y    +N  
Sbjct: 4   FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDV 60

Query: 506 GTDKGTAKVTV 516
           G  +  A++ +
Sbjct: 61  GNVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 504
           EF   V G+P+PT  W   D  +  K R +I+ DDKS  LK+ +   GD G YT   +N 
Sbjct: 2   EFQCEVGGDPVPTVLWRKEDGEL-PKGRAEIL-DDKS--LKIRNVTAGDEGSYTCEAENM 57

Query: 505 WGTDKGTAKVTV 516
            G  + +A +TV
Sbjct: 58  VGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
           KV +      L +   Q  D G YT  A N  G+     E+ V
Sbjct: 48  KVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 22/71 (30%), Positives = 36/71 (50%)

Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 495
           + V  G +  F  +V GEP PT  W+     I+S  R +I + +  +  ++   +  D G
Sbjct: 13  LTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEG 72

Query: 496 IYTLAVKNSWG 506
            YT+ V+NS G
Sbjct: 73  NYTVVVENSEG 83

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 450 VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK----LKVFDSKRGDSGIYTLAVKNSW 505
             G P PT  WL N   + S    ++ +   ++     L + +    DSG YT    NS 
Sbjct: 7   ASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66

Query: 506 GTDKGTAK 513
           GT   +  
Sbjct: 67  GTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 431 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS-TKLKVFDS 489
             +SD +   GS+  ++    G P P   WL N   + S++R ++   D   TKL +   
Sbjct: 4   KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSL--- 60

Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTV 516
              DSG+Y    +N  GT   +A++ V
Sbjct: 61  --SDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 449 NVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507
            V G+P P   WL ND  +   D + + V   K   L +      DSG Y + VKN +G 
Sbjct: 24  TVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG 83

Query: 508 DKGTAKVTV 516
           +     V+V
Sbjct: 84  ETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL-IKWIRTNDKRVTIDNVDYFTKITIRPL 577
            +L W PPEDDGG PI  Y+VE  E  +G    ++    ++   T+  +   T+   R  
Sbjct: 17  VTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFR-- 73

Query: 578 QRSDTAQYTVTATNSQGK 595
                    V A N  G+
Sbjct: 74  ---------VRAVNGGGE 82

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	716
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
KOG3513|consensus	1051		100.0
KOG4222|consensus	1281		99.95
KOG4222|consensus	1281		99.9
KOG0196|consensus	996		99.65
PHA02785	326	IL-beta-binding protein; Provisional	99.59
KOG0196|consensus	996		99.43
KOG4194|consensus	873		99.29
KOG4258|consensus	1025		99.26
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.26
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.21
KOG4194|consensus	873		99.2
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.2
KOG4258|consensus	1025		99.15
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.14
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.14
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.13
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.12
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.12
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.12
KOG0613|consensus	1205		99.11
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.1
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.1
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.08
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.08
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.06
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.06
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.05
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.04
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.04
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.02
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.01
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.01
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.0
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.98
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.98
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.97
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.96
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.96
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.95
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.95
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.94
PHA02785	326	IL-beta-binding protein; Provisional	98.94
PHA02826	227	IL-1 receptor-like protein; Provisional	98.94
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.93
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.93
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.92
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.91
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.91
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.91
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.9
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.9
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.89
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.89
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.89
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.89
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.88
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.88
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.87
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.87
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.86
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.85
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.83
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.82
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.81
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.81
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.81
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.8
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.8
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.79
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.79
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.79
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.79
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.79
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.78
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.77
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.76
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.75
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.74
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.73
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.73
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.73
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.73
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.72
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.72
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.71
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.71
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.71
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.7
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.7
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.69
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.69
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.69
PHA02826	227	IL-1 receptor-like protein; Provisional	98.68
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.68
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.68
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.68
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.67
KOG3515|consensus	741		98.67
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.67
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.66
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.66
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.65
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.64
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.62
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.62
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.62
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.62
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.61
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.61
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.61
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.61
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.6
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.6
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.59
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.58
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.58
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.57
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.57
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.57
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.57
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.57
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.57
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.56
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.56
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.53
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.52
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.51
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.5
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.5
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.5
KOG0613|consensus	1205		98.48
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.48
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.46
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.45
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.45
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.45
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.44
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.44
KOG4802|consensus	516		98.43
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.42
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.42
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.41
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.41
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.41
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.41
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.4
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.4
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.39
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.39
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.38
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.38
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.38
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.37
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.36
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.35
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.34
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.34
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.32
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.32
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.31
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.29
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.28
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.28
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.28
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.26
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.24
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.23
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.22
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.2
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.2
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.19
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.19
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.19
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.19
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.17
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.16
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.14
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.13
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.12
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.12
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.1
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.1
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.09
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.09
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.06
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.06
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	98.06
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.04
KOG4802|consensus	516		98.03
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.01
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.0
smart00409	86	IG Immunoglobulin.	98.0
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	97.99
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	97.99
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.98
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.95
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.95
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.95
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.94
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	97.94
KOG3515|consensus	741		97.92
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.92
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.91
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.89
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.88
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.85
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	97.82
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.81
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.8
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.77
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	97.76
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	97.75
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.74
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.72
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.7
KOG4367|consensus	699		97.7
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.69
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.69
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	97.64
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.64
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.6
KOG3632|consensus	1335		97.59
KOG4152|consensus	830		97.58
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.58
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.52
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.5
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.43
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.4
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	97.4
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	97.38
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	97.38
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.34
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.24
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.24
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.18
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.18
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.12
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.07
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	97.04
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.04
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.03
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.03
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.02
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.01
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.0
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.0
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	96.95
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	96.95
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	96.93
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	96.91
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	96.9
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	96.81
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	96.77
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	96.77
smart00409	86	IG Immunoglobulin.	96.71
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	96.71
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.69
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	96.66
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	96.65
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.57
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	96.56
KOG4367|consensus	699		96.47
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	96.42
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	96.38
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	96.35
COG4733	952	Phage-related protein, tail component [Function un	96.34
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	96.27
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	96.26
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	96.25
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	96.05
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	96.04
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	96.02
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	96.0
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	95.96
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	95.85
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	95.8
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	95.8
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	95.77
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	95.76
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	95.67
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	95.67
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	95.59
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	95.59
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	95.52
KOG3632|consensus	1335		95.51
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	95.51
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	95.44
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	95.43
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	95.42
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	95.41
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	95.4
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	95.32
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	95.31
PHA03376	221	BARF1; Provisional	95.26
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	95.26
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	95.2
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	95.17
PHA02987	189	Ig domain OX-2-like protein; Provisional	95.15
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	95.1
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	95.02
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	95.0
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	94.99
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	94.99
KOG4152|consensus	830		94.55
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	94.44
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	94.38
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	94.37
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	94.36
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	94.27
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	94.27
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	94.26
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	94.26
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	94.25
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	94.25
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	94.25
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	94.24
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	94.22
PHA02982	251	hypothetical protein; Provisional	93.8
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	93.76
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	93.75
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	93.75
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	93.72
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	93.65
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	93.58
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	93.51
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	93.37
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	93.27
COG4733	952	Phage-related protein, tail component [Function un	93.15
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	93.06
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	92.34
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	92.3
KOG4806|consensus	454		92.23
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	92.08
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	91.96
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	91.79
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	91.77
KOG4228|consensus	1087		91.57
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	91.35
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	91.3
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	90.56
smart00407	75	IGc1 Immunoglobulin C-Type.	90.43
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	89.96
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	89.92
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	89.88
smart00406	81	IGv Immunoglobulin V-Type.	89.35
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	89.0
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	88.95
KOG4228|consensus	1087		88.26
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	88.06
PHA02633	63	hypothetical protein; Provisional	87.98
smart00407	75	IGc1 Immunoglobulin C-Type.	87.93
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	87.69
PHA02987	189	Ig domain OX-2-like protein; Provisional	87.24
KOG4806|consensus	454		87.01
PHA03376	221	BARF1; Provisional	86.93
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	86.79
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	86.74
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	86.74
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	86.51
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	86.35
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	86.31
cd05770	93	IgC_beta2m Class I major histocompatibility comple	86.3
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	86.23
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	85.82
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	85.8
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	85.4
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	85.0
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	84.85
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	84.61
smart00406	81	IGv Immunoglobulin V-Type.	84.17
PHA02633	63	hypothetical protein; Provisional	83.83
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	82.8
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	82.14
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	81.85
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	81.41
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	80.69
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	80.57
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	80.56

>KOG3513|consensus

Probab=100.00  E-value=4.2e-41  Score=347.39  Aligned_cols=632  Identities=19%  Similarity=0.221  Sum_probs=411.3

Q ss_pred             CcEEEEEeCCeEEEEeeCCCCCCCcceeeEEEEEccCCCCC-CCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcC
Q psy7040          18 PLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPE-GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP   96 (716)
Q Consensus        18 ~l~~~~~~~~~~~~~W~~p~~~~~~~~~~y~~~~~~~~~p~-~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~   96 (716)
                      .|+|.+++....-..=|-..+..|...-.+.+.+...+.=. .+-.+.......+.+..+.    .|.|...|+......
T Consensus       295 vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a----~g~P~p~v~WlkNg~  370 (1051)
T KOG3513|consen  295 VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKA----SGKPNPTVKWLKNGE  370 (1051)
T ss_pred             EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEe----cCCCCCceEEeeCCe
Confidence            45665555555555444444555544444444444422111 1111222233344444443    234444444322111


Q ss_pred             C--CCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCCccccceEEecCCCCc-------c--cccccccceec
Q psy7040          97 E--TGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSK-------Y--TSVSSLDSHKR  165 (716)
Q Consensus        97 ~--~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~p~~~-------~--~~~~~~~~~~~  165 (716)
                      .  ...-..........+.|.+|++.+.+.|+|.|.|.+|....+..+..+...+.+..       .  ..-...+.|++
T Consensus       371 pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~  450 (1051)
T KOG3513|consen  371 PLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKP  450 (1051)
T ss_pred             ecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeecc
Confidence            0  00110001112368999999999999999999999997766544433333333332       1  12223466888


Q ss_pred             ccCCC-------C-----CCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEe
Q psy7040         166 SNQPC-------G-----SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVS  233 (716)
Q Consensus       166 ~~~p~-------G-----~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~  233 (716)
                      ...|.       |     +++|+.+..   +++|.|.+++..|+|.|+|.|.|..|.....+.|.|++++.....|....
T Consensus       451 ~asP~p~~~W~k~~~~~~~~~r~~i~e---dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~  527 (1051)
T KOG3513|consen  451 FASPKPKVSWLKGGEKLLQSGRIRILE---DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTD  527 (1051)
T ss_pred             CCCCcceEEEEcCCcccccCceEEECC---CCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhh
Confidence            88887       2     567777764   78899999999999999999999999999999999999987666666666


Q ss_pred             EEeCCeEEEEEECCCCCCCCccceEEEEEEe------CCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy7040         234 NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMD------EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKS  307 (716)
Q Consensus       234 ~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~------~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~  307 (716)
                      ...+.++.|.|+...+..-  ...|.+....      ........... ..+ ..++|.++...+.+.|.|.|....-. 
T Consensus       528 v~~g~~v~l~Ce~shD~~l--d~~f~W~~nG~~id~~~~~~~~~~~~~-~~~-g~L~i~nv~l~~~G~Y~C~aqT~~Ds-  602 (1051)
T KOG3513|consen  528 VKVGESVTLTCEASHDPSL--DITFTWKKNGRPIDFNPDGDHFEINDG-SDS-GRLTIANVSLEDSGKYTCVAQTALDS-  602 (1051)
T ss_pred             hccCceEEEEeecccCCCc--ceEEEEEECCEEhhccCCCCceEEeCC-cCc-cceEEEeeccccCceEEEEEEEeecc-
Confidence            7778999999997543321  1222222110      01111222111 122 56999999999999999999884322 


Q ss_pred             CCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCC---eE
Q psy7040         308 EPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTP---KG  384 (716)
Q Consensus       308 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~---~~  384 (716)
                      .....  .+.++   .+|++|.++.+....+++++|+|.+.. +++++|..|.|+.+......|.....++....   +.
T Consensus       603 ~s~~A--~l~V~---gpPgpP~~v~~~~i~~t~~~lsW~~g~-dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa  676 (1051)
T KOG3513|consen  603 ASARA--DLLVR---GPPGPPPDVHVDDISDTTARLSWSPGS-DNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESA  676 (1051)
T ss_pred             hhccc--ceEEe---cCCCCCCceeEeeeccceEEEEeecCC-CCCCCceEEeEEecCCCCCcceEeeECCCcccCccce
Confidence            12222  23444   678889999999999999999999944 45568999999999998899998886655544   67


Q ss_pred             EecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCe-------
Q psy7040         385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT-------  457 (716)
Q Consensus       385 ~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~-------  457 (716)
                      ++.+|.|...|+|||+|+|..|.|++|.++....+..  .+|..   .+.++....|+.-.|.+  .|+|.+.       
T Consensus       677 ~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~e--a~P~~---~P~nv~g~g~~~~eLvI--tW~Pl~~~~qNG~g  749 (1051)
T KOG3513|consen  677 TVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPE--AAPSV---NPSNVKGGGGSPTELVI--TWEPLPEEEQNGPG  749 (1051)
T ss_pred             eEEccCCCcceEEEEEEEcccccCCCCCCccceecCC--CCCcc---CCccccccCCCCceEEE--EeccCCHHHccCCC
Confidence            7899999999999999999999999999988776533  35553   35677777777666655  7787763       


Q ss_pred             ----EEEEeCCeEeccCCcEEEEeCCCeEEEEE--CCCCCCCceeEEEEEEcCCCceeeEEEEEEE--------------
Q psy7040         458 ----KEWLCNDITIISKDRFKIVNDDKSTKLKV--FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL--------------  517 (716)
Q Consensus       458 ----~~W~~~~~~~~~~~~~~~~~~~~~~~l~i--~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~--------------  517 (716)
                          +.|...+....-..  .+........+.+  ....+...|.+.|+|.|..|.++.+..+.+.              
T Consensus       750 fgY~Vswr~~g~~~~W~~--~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~  827 (1051)
T KOG3513|consen  750 FGYRVSWRPQGADKEWKE--VIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLS  827 (1051)
T ss_pred             ceEEEEEEeCCCCcccce--eEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccce
Confidence                66776665421111  1111111234444  4456689999999999999999877666555              


Q ss_pred             -------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEE
Q psy7040         518 -------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT  590 (716)
Q Consensus       518 -------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  590 (716)
                             .+.|+|++|..++|. +++|+|+|.......-...-.+         .....+...|.||++++.|.|.|+|+
T Consensus       828 ~~~~s~s~~~v~W~~~~~~nG~-l~gY~v~Y~~~~~~~~~~~~~~---------i~~~~~~~~ltgL~~~T~Y~~~vrA~  897 (1051)
T KOG3513|consen  828 AKPLSSSEVNLSWKPPLWDNGK-LTGYEVKYWKINEKEGSLSRVQ---------IAGNRTSWRLTGLEPNTKYRFYVRAY  897 (1051)
T ss_pred             eecccCceEEEEecCcCccCCc-cceeEEEEEEcCCCccccccee---------ecCCcceEeeeCCCCCceEEEEEEEe
Confidence                   899999999888854 9999999998765210011111         11234899999999999999999999


Q ss_pred             cCCCCCccceeeec---cCCCCC----Ccc--ceeeccceeEEEEE----------EeeEEEEeeeeccCceeeEEEEeC
Q psy7040         591 NSQGKDQVFIEVVV---TDKPSA----PEG--PIQWLLTLTDVTWE----------ISNYLQELHSSLMPISLESQYLMN  651 (716)
Q Consensus       591 n~~G~~~~s~~~~v---~~~p~~----~~~--~~~~~~~~v~l~w~----------i~~y~v~~~~~~~~~~~~~~W~~~  651 (716)
                      |.+|.|+.+....+   +.+|+.    |..  +.......+.|.|.          +.||.|.++...-          .
T Consensus       898 nsaG~Gp~s~~~~~tt~k~pPs~~~~~p~g~~~~~~~~~~~~l~w~~v~~~~nes~v~gYkV~~~~~~~----------~  967 (1051)
T KOG3513|consen  898 TSAGGGPASSEENVTTKKAPPSQVDIAPPGNFIWKFSASILLLLWLLVSAFENESEVGGYKVLYREDLQ----------N  967 (1051)
T ss_pred             cCCCCCCCccceeccccCCCCcccccCCCcceEEeeeeeEEEEEEeeEEEEeecccCcceEEEEeeccc----------C
Confidence            99999999988884   445553    221  34456778899998          7777776554211          1


Q ss_pred             CeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         652 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       652 ~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      ...+..............++  .+.|.+++.+.+..|.+..+....+
T Consensus       968 ~~~~~~t~~~~~~~~~p~~~--~~~y~i~v~~~~~ggdg~~s~~~~~ 1012 (1051)
T KOG3513|consen  968 DIEIILTMKLDAEFPEPSDL--DGKYDIKVRGYSPGGDGTISEEISI 1012 (1051)
T ss_pred             CceeEecccccccccCcccc--CCcceeEeccccCCCCCCcCCcccc
Confidence            11111110001111233333  2788888889998888855554443

>KOG4221|consensus

Probab=100.00  E-value=1.4e-38  Score=326.28  Aligned_cols=525  Identities=18%  Similarity=0.236  Sum_probs=365.8

Q ss_pred             ceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc--cCCCeEEecCCCCCcEEEEEEEEEecCccCCC
Q psy7040          61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDVTGLTPGHEYKFRVKALNKEGESEP  138 (716)
Q Consensus        61 l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~  138 (716)
                      +.+..+....+.++|.+|. ..+.++..|.+.|...... |.....  ......++.+|.+.+.|.|+|+|.|..|.+.+
T Consensus       434 lv~~~~~srfi~~tw~~p~-~~~g~i~~~~v~~~~~~~~-rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~s  511 (1381)
T KOG4221|consen  434 LVANLVSSRFIQLTWRPPA-QISGNISTYTVFYKVEGDV-RERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGES  511 (1381)
T ss_pred             eecccccceeEEEeecCcc-ccCCCcceEEEEEecCCch-hhhheeccCCceEEEeeecccceeEEEEEeccCcccCCcc
Confidence            5555777889999999888 5556699999998765543 322222  22378999999999999999999999999988


Q ss_pred             ccccceEEecC-CCCcccccccccceecccCCC--C-------------CCceEEEEecCCccEEEEeccccCcceEEEE
Q psy7040         139 LETFSSIIARD-PYSKYTSVSSLDSHKRSNQPC--G-------------SGMVRKVQHLDYNTKLGVRMAQRADAGFYTV  202 (716)
Q Consensus       139 s~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~p~--G-------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c  202 (716)
                      +..+...+..+ |....+...+..+|.+.|.+|  |             .+....+....+...++|.+|.+.++|.|+|
T Consensus       512 S~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~v  591 (1381)
T KOG4221|consen  512 SAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLEKYTEYSIRV  591 (1381)
T ss_pred             CCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCCCccceEEEE
Confidence            87766655543 333445556667899999999  2             1122333334567899999999999999999


Q ss_pred             EEEeCCCCceeEEEEEEe---cCCCCCCCCeEEeEEeCCeEEEEEECCCCC--CCCccceEEEEEEeCCCCCeEEccccC
Q psy7040         203 TAENINGKDSVEVEVIVL---DKPSPPGGPLKVSNVHAEGVTLDWKVPDDD--GGQPIEKYVVDKMDEATGRWTPAGETE  277 (716)
Q Consensus       203 ~a~n~~g~~~~~~~~~v~---~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~--~~~~~~~y~v~~~~~~~~~~~~~~~~~  277 (716)
                      .|.|..|....+..+.|.   +.|++|.+.+++.....+++++.|.+|...  +| .+.+|.|.++.........-....
T Consensus       592 vA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng-~itgYkIRy~~~~~~~~~~~t~v~  670 (1381)
T KOG4221|consen  592 VAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNG-QITGYKIRYRKLSREDEVNETVVK  670 (1381)
T ss_pred             EEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccc-eEEEEEEEecccCcccccceeecc
Confidence            999999997766666654   567666655899999999999999987643  34 588999999866544333222233


Q ss_pred             cccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecC--CCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCcc
Q psy7040         278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKN--PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSP  355 (716)
Q Consensus       278 ~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~--~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~  355 (716)
                      ++...+.+.+|+|++.|.|++.|.+..|.+..+....+-+...  ....|.+|..+.+. ....+|.+.|.||...+. .
T Consensus       671 ~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~-~g~~si~vsW~Pp~~~~~-~  748 (1381)
T KOG4221|consen  671 GNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHVH-PGSNSIVVSWTPPPHPNI-V  748 (1381)
T ss_pred             cchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeeec-cCceeEEEEeCCCCChhh-h
Confidence            4678899999999999999999999999998887754443332  22345566655554 456789999999776533 5


Q ss_pred             ceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCccccccccc
Q psy7040         356 IVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSD  435 (716)
Q Consensus       356 i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~  435 (716)
                      +.+|+|.|+.............+.....|.|..|.++..|.++++|+|..|+|.+......+.....+..|. .......
T Consensus       749 vrgY~ig~r~g~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v-~tp~~pp  827 (1381)
T KOG4221|consen  749 VRGYKIGYRPGSGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPV-DTPMLPP  827 (1381)
T ss_pred             hcceEEeeecccCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcC-CCCCCCc
Confidence            889999998655444444555677888999999999999999999999999998765544443211101110 0011112


Q ss_pred             EEEecCCeEEEEEEEeccC-------CC--eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc---
Q psy7040         436 IKVRAGSNFEFDINVIGEP-------IP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN---  503 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p-------~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n---  503 (716)
                      +.+++...-...+.+.|..       ..  .++|..-+..  ....+. .......+..+.++++.+.|++.+.+.-   
T Consensus       828 vgv~A~~~S~tsI~v~w~~~~~~t~~~~~yTVr~~~~gi~--~~~~~~-~~~~t~ls~~v~glkpnt~yEfav~~~~~~~  904 (1381)
T KOG4221|consen  828 VGVRANALSSTSIRVTWADNKDQTTDNRIYTVRWSLTGIR--NGTLYR-YDNSTDLSYLVGGLKPNTPYEFAVMVVKRNR  904 (1381)
T ss_pred             ccccccccccceEEEEEecCCCccccceEEEEEEeecccc--cceeEE-EecccccceeccCcCcCChhhhhhhhhhccC
Confidence            2333332223333334433       12  2444322222  222233 2223456789999999999999887764   


Q ss_pred             CCCceeeEEEEEEE--------------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeee
Q psy7040         504 SWGTDKGTAKVTVL--------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTI  563 (716)
Q Consensus       504 ~~g~~~~s~~~~v~--------------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~  563 (716)
                      ..+..+.+....+.                    .+.+.|.+|...+|. |++|.++|..... .+...|......-.  
T Consensus       905 r~stwsmsv~~~tle~~P~sPP~d~tv~p~e~P~~v~v~WqPp~e~nG~-I~~Yii~Ys~~~n-~~~~dWt~~t~~g~--  980 (1381)
T KOG4221|consen  905 RESTWSMSVENRTLELVPSSPPRDLTVQPDEKPTTVIVHWQPPTEPNGE-ITEYIIYYSTDGN-TPEHDWTIETTAGA--  980 (1381)
T ss_pred             cCCcccceeeeeecccCCCCCChhceecccCCCCccccccCCCcCCCCc-eeeEEEEEecCCC-Cchhhceeeecccc--
Confidence            22222333333333                    789999999998887 9999999997765 33467765433111  


Q ss_pred             ccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee
Q psy7040         564 DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  603 (716)
Q Consensus       564 ~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~  603 (716)
                           ..++.+.+|.+++.|.|+++|.|..|.|+.+..+.
T Consensus       981 -----~L~~~v~~l~p~t~yffkiQAr~~kG~gp~s~~v~ 1015 (1381)
T KOG4221|consen  981 -----ELSHQVPNLDPDTGYFFKIQARNEKGPGPFSSPVL 1015 (1381)
T ss_pred             -----hhhhccCCCCCCCceEEEEEeeccCCCCcccccee
Confidence                 27888999999999999999999999998777665

>KOG4221|consensus

Probab=100.00  E-value=2.7e-37  Score=316.87  Aligned_cols=595  Identities=17%  Similarity=0.206  Sum_probs=411.1

Q ss_pred             CCeEEEEecCCCCCCCCccceEEEEEEcCC--CCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCCccccceE
Q psy7040          68 KDGCTLKWNKPKDDGGEPLEGYLVEKYDPE--TGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSI  145 (716)
Q Consensus        68 ~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~--~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~  145 (716)
                      ..+.+++|+++.  .|.|+..|++.....-  ...|..+...  ..+.|.++-..+.+.|+|.|.|+.|..........+
T Consensus       341 ~e~~die~ec~~--~g~p~p~v~w~kNgd~~ipsdy~ki~~~--~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv  416 (1381)
T KOG4221|consen  341 HESMDIEFECPV--SGKPIPTVRWYKNGDRIIPSDYFKIVGG--GNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVV  416 (1381)
T ss_pred             eeccceeEeCCC--CCCCcceEEEEecCcccCcccceEecCC--CCcEEEEEecccchhhhhhhccCcccccchhhheec
Confidence            348899999876  4457888877554221  2234333332  348888888888889999999999855433332222


Q ss_pred             Ee----------cCCCCcccccccccceecccCCC----CCCceEEE-------------EecCCccEEEEeccccCcce
Q psy7040         146 IA----------RDPYSKYTSVSSLDSHKRSNQPC----GSGMVRKV-------------QHLDYNTKLGVRMAQRADAG  198 (716)
Q Consensus       146 ~~----------~~p~~~~~~~~~~~~~~~~~~p~----G~~~~~~~-------------~~~~~~~~l~i~~l~~~~~g  198 (716)
                      ..          ..|..+..........+..|.+|    |+-..+.+             ...+......+.+|++...|
T Consensus       417 ~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y  496 (1381)
T KOG4221|consen  417 PQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMY  496 (1381)
T ss_pred             cCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeE
Confidence            11          11222233444445578888877    32222211             11222377899999999999


Q ss_pred             EEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCc
Q psy7040         199 FYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG  278 (716)
Q Consensus       199 ~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~  278 (716)
                      .++|.|.|..|....+..|.|..+|++|.. +.+......++.+.|.+|...++ ++++|.+.+...+.+.|.....   
T Consensus       497 ~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~-~~a~ats~~ti~v~WepP~~~n~-~I~~yk~~ys~~~~~~~~~~~~---  571 (1381)
T KOG4221|consen  497 FFRVRAKNEAGSGESSAPLKVTTQPEGPVQ-LQAYATSPTTILVTWEPPPFGNG-PITGYKLFYSEDDTGKELRVEN---  571 (1381)
T ss_pred             EEEEeccCcccCCccCCceEEecCCCCCcc-ccccccCcceEEEEecCCCCCCC-CceEEEEEEEcCCCCceEEEec---
Confidence            999999999999999999999999998887 88888999999999999886555 8999999998887777776654   


Q ss_pred             ccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCC-CCcEEEeeeCCeEEEEecCCC-CCCCccc
Q psy7040         279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP-GTPEIKDFDTDFVELAWTPPE-QNGGSPI  356 (716)
Q Consensus       279 ~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p-~~~~~~~~~~~~i~l~W~~p~-~~~~~~i  356 (716)
                      +...++|.+|.++++|.|+|.|.|..|.+..+....+.+..   +.|++| .|+++...+.++|.|.|.+|. ...++.+
T Consensus       572 n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls---d~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~i  648 (1381)
T KOG4221|consen  572 NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS---DVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQI  648 (1381)
T ss_pred             CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc---CCCCCCCcceEEEecCCCeEEEEccCCCcccccceE
Confidence            46899999999999999999999999998877775555444   778755 559999999999999999864 3445679


Q ss_pred             eEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccE
Q psy7040         357 VGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDI  436 (716)
Q Consensus       357 ~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~  436 (716)
                      .+|+|+|+..............++...+.+.+|+|++.|.|+|.|.+..|.|++|++....+.......+.  ...+..+
T Consensus       649 tgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~v--p~~ps~l  726 (1381)
T KOG4221|consen  649 TGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERV--PGKPSEL  726 (1381)
T ss_pred             EEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccC--CCCCcee
Confidence            99999998665344333444456788899999999999999999999999999998876665543322211  1223344


Q ss_pred             EEecCCeEEEEEEEeccCCCe---------EEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         437 KVRAGSNFEFDINVIGEPIPT---------KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~~---------~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      .+..|.   -.+.+.|.|.+.         +-|. .+..+.  +.-.+..+.....+.|..|.+...|.+++.|+|..|.
T Consensus       727 ~~~~g~---~si~vsW~Pp~~~~~~vrgY~ig~r-~g~~~p--~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gd  800 (1381)
T KOG4221|consen  727 HVHPGS---NSIVVSWTPPPHPNIVVRGYKIGYR-PGSGIP--DTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGD  800 (1381)
T ss_pred             eeccCc---eeEEEEeCCCCChhhhhcceEEeee-cccCCC--CCccEEecceeeEEEEEecccCceEEEEEEEeccCCC
Confidence            555553   345567888774         3343 233322  2334555666778999999999999999999999998


Q ss_pred             eeeEEEEEEE----------------------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccce
Q psy7040         508 DKGTAKVTVL----------------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDK  559 (716)
Q Consensus       508 ~~~s~~~~v~----------------------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~  559 (716)
                      +........+                            +|.+.|....+. -.+...|.+.|...+...-...|+.+.. 
T Consensus       801 G~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~-t~~~~~yTVr~~~~gi~~~~~~~~~~~t-  878 (1381)
T KOG4221|consen  801 GNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQ-TTDNRIYTVRWSLTGIRNGTLYRYDNST-  878 (1381)
T ss_pred             CcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceEEEEEecCCCc-cccceEEEEEEeecccccceeEEEeccc-
Confidence            7544332222                            899999874222 2346778888863321000023322221 


Q ss_pred             eeeeccccceeEEEEcCCCCCCeEEEEEEEEcCC-CCCccceeee--c-cCCCCC-Cccceee---ccceeEEEEE----
Q psy7040         560 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ-GKDQVFIEVV--V-TDKPSA-PEGPIQW---LLTLTDVTWE----  627 (716)
Q Consensus       560 ~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~-G~~~~s~~~~--v-~~~p~~-~~~~~~~---~~~~v~l~w~----  627 (716)
                               ...+.+.+|++++.|.|.+.+.-+. -.+.++..+.  . ...|.. |..+...   ..+++.+.|.    
T Consensus       879 ---------~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tle~~P~sPP~d~tv~p~e~P~~v~v~WqPp~e  949 (1381)
T KOG4221|consen  879 ---------DLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTLELVPSSPPRDLTVQPDEKPTTVIVHWQPPTE  949 (1381)
T ss_pred             ---------ccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeecccCCCCCChhceecccCCCCccccccCCCcC
Confidence                     2788999999999999999877633 2455555454  2 223332 2222211   3589999999    


Q ss_pred             ----EeeEEEEeeeeccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         628 ----ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       628 ----i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                          |++|.+.|..-.-.  ..-.|.....      .+...+..+.+|.+++.|-|+++|.|..|.+..+.-+...+.
T Consensus       950 ~nG~I~~Yii~Ys~~~n~--~~~dWt~~t~------~g~~L~~~v~~l~p~t~yffkiQAr~~kG~gp~s~~v~y~t~ 1019 (1381)
T KOG4221|consen  950 PNGEITEYIIYYSTDGNT--PEHDWTIETT------AGAELSHQVPNLDPDTGYFFKIQARNEKGPGPFSSPVLYETS 1019 (1381)
T ss_pred             CCCceeeEEEEEecCCCC--chhhceeeec------ccchhhhccCCCCCCCceEEEEEeeccCCCCccccceeeecc
Confidence                99999987551100  0334544211      112246779999999999999999999999976665555443

>KOG3513|consensus

Probab=100.00  E-value=1e-33  Score=293.05  Aligned_cols=505  Identities=20%  Similarity=0.268  Sum_probs=359.2

Q ss_pred             EEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc---cCCCeEEecCCCCCcEEEEEEEEEecCccCCCcc
Q psy7040          64 SNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TREPEMDVTGLTPGHEYKFRVKALNKEGESEPLE  140 (716)
Q Consensus        64 ~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~  140 (716)
                      ..+-...+.|..++    .++|--  .++|...+. .+..-..   ..+.++.|.+++..|.+.|.|.|.|..|......
T Consensus       437 ~a~~g~~v~i~C~~----~asP~p--~~~W~k~~~-~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~  509 (1051)
T KOG3513|consen  437 MAVVGGTVTIDCKP----FASPKP--KVSWLKGGE-KLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTG  509 (1051)
T ss_pred             EEEeCCeEEEeecc----CCCCcc--eEEEEcCCc-ccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEE
Confidence            35566677787775    233333  344544433 2222111   1246899999999999999999999999765332


Q ss_pred             ccceE----EecCCCCcc--cccccccceecccCCC----------C-------CCceEEEEecCCccEEEEeccccCcc
Q psy7040         141 TFSSI----IARDPYSKY--TSVSSLDSHKRSNQPC----------G-------SGMVRKVQHLDYNTKLGVRMAQRADA  197 (716)
Q Consensus       141 ~~~~~----~~~~p~~~~--~~~~~~~~~~~~~~p~----------G-------~~~~~~~~~~~~~~~l~i~~l~~~~~  197 (716)
                      .+...    ....|....  ......+.|+...++.          |       .+.++......+.+.|+|.+++..|.
T Consensus       510 ~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~  589 (1051)
T KOG3513|consen  510 NLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDS  589 (1051)
T ss_pred             EEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccC
Confidence            22111    011222221  1222345577776665          3       55666666655558899999999999


Q ss_pred             eEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccC
Q psy7040         198 GFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE  277 (716)
Q Consensus       198 g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~  277 (716)
                      |.|.|+|.....+.+..+.+.|.++|.||.. +.+..+..++++|+|.+.. ++.+||..|.|+.+......|......+
T Consensus       590 G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~-v~~~~i~~t~~~lsW~~g~-dn~SpI~~Y~iq~rt~~~~~W~~v~~vp  667 (1051)
T KOG3513|consen  590 GKYTCVAQTALDSASARADLLVRGPPGPPPD-VHVDDISDTTARLSWSPGS-DNNSPIEKYTIQFRTPFPGKWKAVTTVP  667 (1051)
T ss_pred             ceEEEEEEEeecchhcccceEEecCCCCCCc-eeEeeeccceEEEEeecCC-CCCCCceEEeEEecCCCCCcceEeeECC
Confidence            9999999999999999999999999999998 9999999999999999644 4557899999999999899999888665


Q ss_pred             cccc---eEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCC-CCCCcEEEeeeCCeEEEEecC-CCCCC
Q psy7040         278 GPVT---GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG-KPGTPEIKDFDTDFVELAWTP-PEQNG  352 (716)
Q Consensus       278 ~~~~---~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~-p~~~~  352 (716)
                      ....   +.++.+|.|...|+|||.|.|..|.++++.++....  +..++|. .|.++.......+.+.|+|++ +....
T Consensus       668 ~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~r--T~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~q  745 (1051)
T KOG3513|consen  668 GNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVR--TPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQ  745 (1051)
T ss_pred             CcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCcccee--cCCCCCccCCccccccCCCCceEEEEeccCCHHHc
Confidence            4444   677899999999999999999999999999995554  4556675 889999998899999999999 55445


Q ss_pred             CccceEEEEEEeecCCC-ceEEEeeecCCCCeEEecC--CCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecC-CCCCcc
Q psy7040         353 GSPIVGYIIEKKEKYSP-IWEKCAQTEGDTPKGKVLD--LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYI  428 (716)
Q Consensus       353 ~~~i~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~--l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~-~~~P~~  428 (716)
                      +++-.+|+|.|+..+.. .|............+.+.+  ..+.+.|+++|+|+|..|.|+.+........+.. +.+|. 
T Consensus       746 NG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~-  824 (1051)
T KOG3513|consen  746 NGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPT-  824 (1051)
T ss_pred             cCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCc-
Confidence            56889999999999877 8998887776667777765  5669999999999999999987776655554442 22222 


Q ss_pred             cccccccEEEecCCeEEEEEEEeccCCCe---------EE-EEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         429 NRDQLSDIKVRAGSNFEFDINVIGEPIPT---------KE-WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       429 ~~~~~~~~~~~~g~~~~~~~~v~~~p~~~---------~~-W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                            .+.+...+.  -.+.+.|+++..         +. |..++..   .....+...++..+..|.+|++++.|.+.
T Consensus       825 ------~~~~~~~s~--s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~---~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~  893 (1051)
T KOG3513|consen  825 ------KLSAKPLSS--SEVNLSWKPPLWDNGKLTGYEVKYWKINEKE---GSLSRVQIAGNRTSWRLTGLEPNTKYRFY  893 (1051)
T ss_pred             ------cceeecccC--ceEEEEecCcCccCCccceeEEEEEEcCCCc---ccccceeecCCcceEeeeCCCCCceEEEE
Confidence                  233333332  234446655532         33 3333332   22333444577889999999999999999


Q ss_pred             EEEEcCCCceeeEEEEEEE------------------------EEEEEEeC--CCCCCCCceeeEEEEEEecCCCceeee
Q psy7040         499 LAVKNSWGTDKGTAKVTVL------------------------GCSLKWNP--PEDDGGAPIEYYMVEKMETDTGKVLIK  552 (716)
Q Consensus       499 ~~a~n~~g~~~~s~~~~v~------------------------~v~l~W~~--p~~~~~~~i~~y~v~~~~~~~~~~~~~  552 (716)
                      ++|+|.+|.++.+..+.++                        .+.|.|..  +.. +...+.+|.|.++......   .
T Consensus       894 vrA~nsaG~Gp~s~~~~~tt~k~pPs~~~~~p~g~~~~~~~~~~~~l~w~~v~~~~-nes~v~gYkV~~~~~~~~~---~  969 (1051)
T KOG3513|consen  894 VRAYTSAGGGPASSEENVTTKKAPPSQVDIAPPGNFIWKFSASILLLLWLLVSAFE-NESEVGGYKVLYREDLQND---I  969 (1051)
T ss_pred             EEEecCCCCCCCccceeccccCCCCcccccCCCcceEEeeeeeEEEEEEeeEEEEe-ecccCcceEEEEeecccCC---c
Confidence            9999999988777666555                        77888877  333 4555899999888765421   1


Q ss_pred             EEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeec
Q psy7040         553 WIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  604 (716)
Q Consensus       553 w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v  604 (716)
                      +........       .......++  +..|.+.+++.+..|.|..+....+
T Consensus       970 ~~~~t~~~~-------~~~~~p~~~--~~~y~i~v~~~~~ggdg~~s~~~~~ 1012 (1051)
T KOG3513|consen  970 EIILTMKLD-------AEFPEPSDL--DGKYDIKVRGYSPGGDGTISEEISI 1012 (1051)
T ss_pred             eeEeccccc-------ccccCcccc--CCcceeEeccccCCCCCCcCCcccc
Confidence            111111000       011112222  2689999999999999877776654

>KOG4222|consensus

Probab=99.95  E-value=1.5e-25  Score=229.92  Aligned_cols=549  Identities=17%  Similarity=0.193  Sum_probs=355.8

Q ss_pred             cEEEEEEEEEecCccCCCccccceEEecC-CCCc-------ccccccccceecccCCC---------CCCce---EEEEe
Q psy7040         121 HEYKFRVKALNKEGESEPLETFSSIIARD-PYSK-------YTSVSSLDSHKRSNQPC---------GSGMV---RKVQH  180 (716)
Q Consensus       121 ~~y~~~v~a~~~~g~~~~s~~~~~~~~~~-p~~~-------~~~~~~~~~~~~~~~p~---------G~~~~---~~~~~  180 (716)
                      +.+.|+|.|.|..|+...-.....++... -+.+       .......++|..-|..+         |....   ..+..
T Consensus       103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~  182 (1281)
T KOG4222|consen  103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA  182 (1281)
T ss_pred             CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE
Confidence            78999999999999877666655554421 1211       22333445555544433         53222   22222


Q ss_pred             cCCccEEEEeccccCcceEEEEEEEeCCCC-ceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEE
Q psy7040         181 LDYNTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV  259 (716)
Q Consensus       181 ~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~  259 (716)
                      .-..+.|.|.++.+.|+|.|.|+|.|..|. .+..+.++|..+|..-..+......-+..+.+.|..+.+    |.-.-.
T Consensus       183 lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~Gd----P~P~Vr  258 (1281)
T KOG4222|consen  183 LISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGD----PQPTVR  258 (1281)
T ss_pred             EecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCC----CCCcee
Confidence            334678999999999999999999999999 677899999999966554433333334447777775433    222222


Q ss_pred             EEEEeC--CCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeee
Q psy7040         260 VDKMDE--ATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFD  337 (716)
Q Consensus       260 v~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~  337 (716)
                      +.+...  ...++. +.   ....++.|....|.++..|.|.|.|..|.-+.+..   .++..+...-..|.+-.+  .-
T Consensus       259 wkk~~~~~P~~ry~-i~---~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~---ltV~apP~f~kkp~dq~v--~l  329 (1281)
T KOG4222|consen  259 WKKDDPSLPRSRYS-IL---DDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASAT---LTVQAPPSFGKKPRDQKV--AL  329 (1281)
T ss_pred             eeccCCCCCcccee-ee---eccccccccccCCCcccceeeeccccccccccccc---eEEecCcccccccCcccc--cc
Confidence            222111  001111 11   22477888999999999999999999887655554   334322222223322221  12


Q ss_pred             CCeEEEEecCCCCCCCccceEEEEEEeecCCCc---e------EEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040         338 TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI---W------EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  408 (716)
Q Consensus       338 ~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~---~------~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~  408 (716)
                      +..+++.+..+..+    ...+  .|...+...   |      .....+. ....+++.++...+...|.|.+.+..|.+
T Consensus       330 g~~vt~pc~~~gnP----~Pav--fW~keg~q~llf~~~p~~~~~r~svs-~~g~L~it~v~~~d~g~Yvcq~~~~~~ss  402 (1281)
T KOG4222|consen  330 GGTVTFPCETLGNP----PPAV--FWLKEGSQDLLFSASPPSSNGRGSVS-PTGTLTITNVRQSDEGYYVCQTQTSAGSS  402 (1281)
T ss_pred             CceEEeeeecCCCC----Ccce--EEeccCcceecccCCCCCcCccceec-CCCCcccccccccccceEeeccccccccc
Confidence            33455555442221    1111  111111000   0      0000111 12278899999999999999999998877


Q ss_pred             CCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECC
Q psy7040         409 EPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD  488 (716)
Q Consensus       409 ~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~  488 (716)
                      ........+.......||.+......+..+..+....+.|...+.|.+.+.|.+++..+...+......  ....+.+.+
T Consensus       403 ~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~--~~~~l~i~d  480 (1281)
T KOG4222|consen  403 LTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQ--EIGSLRIRD  480 (1281)
T ss_pred             ccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCccccee--eeceeeeee
Confidence            655444444333333577777667777777789999999999999999999999987765433222111  234899999


Q ss_pred             CCCCCceeEEEEEEcCCCceeeEEEEEEE--------------------------------EEEEEEeCCCCCCCCceee
Q psy7040         489 SKRGDSGIYTLAVKNSWGTDKGTAKVTVL--------------------------------GCSLKWNPPEDDGGAPIEY  536 (716)
Q Consensus       489 l~~~~~~~y~~~a~n~~g~~~~s~~~~v~--------------------------------~v~l~W~~p~~~~~~~i~~  536 (716)
                      +...|.|.|+|.|.+..|+...++.+.+.                                ++.|+|.+....+..++.+
T Consensus       481 l~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~  560 (1281)
T KOG4222|consen  481 LKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASG  560 (1281)
T ss_pred             eecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccch
Confidence            99999999999999999999999988877                                8999999987767888999


Q ss_pred             EEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee-ccCCCC------
Q psy7040         537 YMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV-VTDKPS------  609 (716)
Q Consensus       537 y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~-v~~~p~------  609 (716)
                      |.+++-....   ...|........       .+.+.|.+|+|+..|.|.|+|.|..|-+.++.... +...|.      
T Consensus       561 yiieafs~~~---~etw~~ta~~v~-------~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~  630 (1281)
T KOG4222|consen  561 YIIEAFSPDL---GETWQTTAGRVK-------TTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAG  630 (1281)
T ss_pred             hHHHHhhhhh---cccccccccccc-------cceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhh
Confidence            9987664332   156766544332       38899999999999999999999999777766554 311111      


Q ss_pred             ---------------CCccceeeccceeEEEEE---------EeeEEEEeeeeccCceeeEEEEeCCeEeeecccceeeE
Q psy7040         610 ---------------APEGPIQWLLTLTDVTWE---------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTK  665 (716)
Q Consensus       610 ---------------~~~~~~~~~~~~v~l~w~---------i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  665 (716)
                                     .......++.+++.+.|.         |.+|.|.|+.+.-   +...|.-.+....     ....
T Consensus       631 ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~---~~a~~s~~~v~~~-----t~~s  702 (1281)
T KOG4222|consen  631 ADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGS---QLAQWSNAGVTVP-----TPES  702 (1281)
T ss_pred             hhHHHHHHhhcccceeeccccccchhheeeeeeeecccCcccccceEEEeccCcc---ccccccccceecc-----CCcc
Confidence                           111133456789999998         7888888877542   2334444443322     2268


Q ss_pred             EEEccCCCCCcEEEEEEEEcCCCCc------eeeEEEEEecCCCCCCCCe
Q psy7040         666 ITIRPLQRSDTAQYTVTATNSQGKD------QVFIEVVVTDKPSAPEGPI  709 (716)
Q Consensus       666 ~~i~~l~~~~~y~y~~~a~n~~G~~------~~s~~l~v~~~p~~p~~p~  709 (716)
                      +.+.+|.+.+.|++.+.-.-..|..      ....-++...+|.+|+.-+
T Consensus       703 ~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~  752 (1281)
T KOG4222|consen  703 VVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGV  752 (1281)
T ss_pred             eeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCc
Confidence            8999999999999999877775554      2223356667788776553

>KOG4222|consensus

Probab=99.90  E-value=1.7e-21  Score=200.46  Aligned_cols=549  Identities=17%  Similarity=0.212  Sum_probs=331.4

Q ss_pred             EEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEe----cccCCCeEEecCCCCCcEEEEEEEEEecCccCCC
Q psy7040          63 VSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV----GKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP  138 (716)
Q Consensus        63 ~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~----~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~  138 (716)
                      +.....+.+.|+..+|.... .+.    |.|..++...+...    .......+.|.+.+..+.+.|.|.|.|-.|+-+.
T Consensus       141 ~~~a~ge~avlEcgpP~ghp-ept----vSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS  215 (1281)
T KOG4222|consen  141 VQAAVGEEAVLECGPPRGHP-EPT----VSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERES  215 (1281)
T ss_pred             ccccccceeEEeccCCCCCC-CCc----ceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeeccccccccc
Confidence            44555667777777775321 222    44555554444111    1122368999999999999999999999998777


Q ss_pred             ccccceEEecCCCCcc-------cccccccceecccCCC---------C--CCceEEEEecCCccEEEEeccccCcceEE
Q psy7040         139 LETFSSIIARDPYSKY-------TSVSSLDSHKRSNQPC---------G--SGMVRKVQHLDYNTKLGVRMAQRADAGFY  200 (716)
Q Consensus       139 s~~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~p~---------G--~~~~~~~~~~~~~~~l~i~~l~~~~~g~y  200 (716)
                      ..+...+..++-+...       ........|++.++|.         +  ...++.+..  .+.+|.|...++.|+|.|
T Consensus       216 ~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~--d~qtl~i~r~tp~deg~y  293 (1281)
T KOG4222|consen  216 IPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILD--DTQTLRIDRVTPTDEGTY  293 (1281)
T ss_pred             ccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeee--ccccccccccCCCcccce
Confidence            6666655554433221       1222445688888887         2  233444443  457899999999999999


Q ss_pred             EEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeC------CCCCeEEcc
Q psy7040         201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDE------ATGRWTPAG  274 (716)
Q Consensus       201 ~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~------~~~~~~~~~  274 (716)
                      .|.|.|..|.-...+.++|+.+|..-..+..-....+..+++.|..+..+  .+..++..+-...      ....-....
T Consensus       294 ~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP--~PavfW~keg~q~llf~~~p~~~~~r~s  371 (1281)
T KOG4222|consen  294 VCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNP--PPAVFWLKEGSQDLLFSASPPSSNGRGS  371 (1281)
T ss_pred             eeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCC--CcceEEeccCcceecccCCCCCcCccce
Confidence            99999999999999999999999776665444455677888888865432  2232222111000      000000000


Q ss_pred             ccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceE--------------------------------------
Q psy7040         275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI--------------------------------------  316 (716)
Q Consensus       275 ~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~--------------------------------------  316 (716)
                       . .....+.|+++...+.+.|.|.+.+..|.+........+                                      
T Consensus       372 -v-s~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~  449 (1281)
T KOG4222|consen  372 -V-SPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPT  449 (1281)
T ss_pred             -e-cCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCC
Confidence             0 011255555666555555655555544433221111000                                      


Q ss_pred             ---------------------------------------------------------------------EecCCCCCCCC
Q psy7040         317 ---------------------------------------------------------------------EAKNPFNQPGK  327 (716)
Q Consensus       317 ---------------------------------------------------------------------~~~~~~~~p~~  327 (716)
                                                                                           ....+...|++
T Consensus       450 p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~  529 (1281)
T KOG4222|consen  450 PNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSP  529 (1281)
T ss_pred             CCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCC
Confidence                                                                                 01111246677


Q ss_pred             CCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC-CCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040         328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  406 (716)
Q Consensus       328 p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g  406 (716)
                      |....+..+..++++|+|.+....+..++.+|.+++...+ ...|..... ....+.+.|.+|+|+..|.|.|+|.|..|
T Consensus       530 p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~-~v~~t~~~I~gL~P~~sylf~vRa~n~~G  608 (1281)
T KOG4222|consen  530 PGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAG-RVKTTTYAIRGLKPNLSYLFLVRAENEQG  608 (1281)
T ss_pred             CCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhccccccccc-ccccceeeecCcCccceeeeeeecccccc
Confidence            7778888899999999999966656778999999886554 344654433 34567899999999999999999999999


Q ss_pred             CCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEE
Q psy7040         407 PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKV  486 (716)
Q Consensus       407 ~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i  486 (716)
                      -+.++..+..+...+.. +...... .....                           ..+  .          +..+.+
T Consensus       609 is~Ps~~S~~vrta~a~-~~~a~ad-~~k~~---------------------------~~l--s----------~~l~~l  647 (1281)
T KOG4222|consen  609 ISDPSTSSDPVRTAPAD-AAAAGAD-HQKVQ---------------------------REL--S----------NELLRL  647 (1281)
T ss_pred             ccCCcccCCccccCCCC-hhhhhhh-HHHHH---------------------------Hhh--c----------ccceee
Confidence            88877766555442211 0000000 00000                           000  0          001111


Q ss_pred             CCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccc
Q psy7040         487 FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNV  566 (716)
Q Consensus       487 ~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~  566 (716)
                      .++.                      .+...++.+.|..+...+...|.+|+|.|+....  ....|...+.....    
T Consensus       648 ~~~~----------------------~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~--~~a~~s~~~v~~~t----  699 (1281)
T KOG4222|consen  648 SNPN----------------------VLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGS--QLAQWSNAGVTVPT----  699 (1281)
T ss_pred             cccc----------------------ccchhheeeeeeeecccCcccccceEEEeccCcc--ccccccccceeccC----
Confidence            1100                      0111189999998876556679999999997764  12455444433322    


Q ss_pred             cceeEEEEcCCCCCCeEEEEEEEEcCCC---CCccceeeec---cCCCCCCcc------ceeeccceeEEEEE-------
Q psy7040         567 DYFTKITIRPLQRSDTAQYTVTATNSQG---KDQVFIEVVV---TDKPSAPEG------PIQWLLTLTDVTWE-------  627 (716)
Q Consensus       567 ~~~~~~~i~~L~~~~~y~~~v~a~n~~G---~~~~s~~~~v---~~~p~~~~~------~~~~~~~~v~l~w~-------  627 (716)
                        ...+.+.+|.+++.|+|.++-+...|   .|.++....+   ..+|..|..      +...+.+...|+|.       
T Consensus       700 --~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~  777 (1281)
T KOG4222|consen  700 --PESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQ  777 (1281)
T ss_pred             --CcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCccccc
Confidence              27889999999999999999888755   3334443332   334433321      22334778899998       


Q ss_pred             ---EeeEEEEeeeeccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEEEecCCC
Q psy7040         628 ---ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPS  703 (716)
Q Consensus       628 ---i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~v~~~p~  703 (716)
                         +.+|.+++.          -|.+-.............+.+|.+|...++|.|+|.|.|.+|.+- +.-.+.+...+.
T Consensus       778 ng~~qg~ki~~~----------~~e~tr~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~~~~~s  847 (1281)
T KOG4222|consen  778 NGILQGYKIECS----------GGEKTRIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPIVFDTHS  847 (1281)
T ss_pred             CCcccceeEEee----------cCccccccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeeeecCCCc
Confidence               566666432          222100000000123347889999999999999999999999984 334455555444


Q ss_pred             C
Q psy7040         704 A  704 (716)
Q Consensus       704 ~  704 (716)
                      .
T Consensus       848 e  848 (1281)
T KOG4222|consen  848 E  848 (1281)
T ss_pred             C
Confidence            3

>KOG0196|consensus

Probab=99.65  E-value=1.1e-14  Score=145.68  Aligned_cols=203  Identities=25%  Similarity=0.324  Sum_probs=156.7

Q ss_pred             EEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCC--CeEEccc--------cCcccceEE
Q psy7040         215 VEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG--RWTPAGE--------TEGPVTGLE  284 (716)
Q Consensus       215 ~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~--~~~~~~~--------~~~~~~~~~  284 (716)
                      ...-.+.+|++|.+ +.. .+.++++.|.|.+|.+.+|..-..|.+..+.....  ....|..        ..-.+..+.
T Consensus       324 ~~mpCT~PPSaP~n-lis-~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~  401 (996)
T KOG0196|consen  324 PSMPCTRPPSAPRN-LIS-NVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVT  401 (996)
T ss_pred             CCCCCCCCCCccce-eee-ecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEE
Confidence            34445678888887 444 48899999999999999998888998877554322  2222221        123578899


Q ss_pred             EcCCCCCCeEEEEEEEEcCCC-CCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEE
Q psy7040         285 VEGLIPNHKYKFRVRAVNKQG-KSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEK  363 (716)
Q Consensus       285 i~~L~p~~~y~~~v~a~n~~g-~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~  363 (716)
                      +.+|.+.+.|+|.|.|+|... .+........+...+....|++...+++.....++++|+|..|+.++| .|..|+|.|
T Consensus       402 v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png-~ildYEvky  480 (996)
T KOG0196|consen  402 VSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNG-VILDYEVKY  480 (996)
T ss_pred             EeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCC-cceeEEEEE
Confidence            999999999999999999754 333334444566666678888889999999999999999999988877 589999999


Q ss_pred             eecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeec
Q psy7040         364 KEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~  421 (716)
                      .+.+. ............+..+|.+|+|++.|.|+|+|.+..|.|..|....+.+...
T Consensus       481 ~ek~~-~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~  537 (996)
T KOG0196|consen  481 YEKDE-DERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS  537 (996)
T ss_pred             eeccc-cccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence            98763 2223334456778899999999999999999999999999998887777643

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.59  E-value=1.3e-13  Score=133.94  Aligned_cols=241  Identities=17%  Similarity=0.186  Sum_probs=143.0

Q ss_pred             EecCCeEEEEEEE-----eccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         438 VRAGSNFEFDINV-----IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       438 ~~~g~~~~~~~~v-----~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +.+|+.+.+.|.+     .+.|.+.+.|+|++...   .+  .........+.|.++...|.|.|+|.|.|..|....++
T Consensus        38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~--~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~  112 (326)
T PHA02785         38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DR--IIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSL  112 (326)
T ss_pred             hhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ce--EEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence            4468888999987     68888999999997432   11  11222344688999999999999999999999888777


Q ss_pred             EEEEEEEE---EEEeC-CCCCCCCceeeEEEE---EEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEE
Q psy7040         513 KVTVLGCS---LKWNP-PEDDGGAPIEYYMVE---KMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQY  585 (716)
Q Consensus       513 ~~~v~~v~---l~W~~-p~~~~~~~i~~y~v~---~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~  585 (716)
                      .+.|....   +.+.. |.....+......+.   ......+.+.+.|.+................+.|.+++..+.+.|
T Consensus       113 ~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y  192 (326)
T PHA02785        113 NLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYY  192 (326)
T ss_pred             EEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEE
Confidence            77765211   11111 111111111112221   001123455699976532111111111235799999999999999


Q ss_pred             EEEEEcCCCCCccce----eeeccCCCCCC-----ccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEee
Q psy7040         586 TVTATNSQGKDQVFI----EVVVTDKPSAP-----EGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVT  656 (716)
Q Consensus       586 ~v~a~n~~G~~~~s~----~~~v~~~p~~~-----~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~  656 (716)
                      .|.|.|..|.-....    .+.|..+..+|     ..+....+..+.|.+++.++.-..       ...+.|+++|..+.
T Consensus       193 ~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~-------~~~v~W~kng~~i~  265 (326)
T PHA02785        193 TCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTT-------DADVFWISNGMYYE  265 (326)
T ss_pred             EEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCC-------CceEEEEECCEECC
Confidence            999999887543322    12233222222     211222244555444333221100       01689999998774


Q ss_pred             eccc-------------------ceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         657 IDNV-------------------DYFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       657 ~~~~-------------------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      ....                   .....|.|.++...|.|.|+|.|.|..|..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        266 EDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             CcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence            3200                   013579999999999999999999988433

>KOG0196|consensus

Probab=99.43  E-value=1.4e-11  Score=124.04  Aligned_cols=189  Identities=24%  Similarity=0.364  Sum_probs=133.6

Q ss_pred             CCCCCceEE-EEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC--CcEEEecccC----------CCeEEecCCCCCcE
Q psy7040          56 DPEGPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET--GVWIPVGKTR----------EPEMDVTGLTPGHE  122 (716)
Q Consensus        56 ~p~~~l~~~-~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~--~~~~~~~~~~----------~~~~~i~~L~~~~~  122 (716)
                      +|.+|.++. +++.+++.|+|.+|.+.+|..-..|.|..+....  +....|....          .+.+++.||.+.+.
T Consensus       331 PPSaP~nlis~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah~~  410 (996)
T KOG0196|consen  331 PPSAPRNLISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAHTN  410 (996)
T ss_pred             CCCccceeeeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccccc
Confidence            455565554 6899999999999999888877889998766542  2333343221          36899999999999


Q ss_pred             EEEEEEEEecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEE
Q psy7040         123 YKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTV  202 (716)
Q Consensus       123 y~~~v~a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c  202 (716)
                      |.|.|.|+|+..  ..+.....                                                          
T Consensus       411 YTFeV~AvNgVS--~lsp~~~~----------------------------------------------------------  430 (996)
T KOG0196|consen  411 YTFEVEAVNGVS--DLSPFPRQ----------------------------------------------------------  430 (996)
T ss_pred             cEEEEEEeeccc--ccCCCCCc----------------------------------------------------------
Confidence            999999999543  22211000                                                          


Q ss_pred             EEEeCCCCceeEEEEEE-ecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCC--CCeEEccccCcc
Q psy7040         203 TAENINGKDSVEVEVIV-LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT--GRWTPAGETEGP  279 (716)
Q Consensus       203 ~a~n~~g~~~~~~~~~v-~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~  279 (716)
                               ...+.++. +..|.+... ++......++++|+|..|..++| .+..|.|.|.+...  ..+....   ..
T Consensus       431 ---------~a~vnItt~qa~ps~V~~-~r~~~~~~~sitlsW~~p~~png-~ildYEvky~ek~~~e~~~~~~~---t~  496 (996)
T KOG0196|consen  431 ---------FASVNITTNQAAPSPVSV-LRQVSRTSDSITLSWSEPDQPNG-VILDYEVKYYEKDEDERSYSTLK---TK  496 (996)
T ss_pred             ---------ceeEEeeccccCCCccce-EEEeeeccCceEEecCCCCCCCC-cceeEEEEEeeccccccceeEEe---cc
Confidence                     00011110 123444444 78888999999999999988877 48999999987642  2222222   34


Q ss_pred             cceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEe
Q psy7040         280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEA  318 (716)
Q Consensus       280 ~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~  318 (716)
                      .++.+|.+|+|++.|.|+|+|.+..|.+..+......+.
T Consensus       497 ~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~  535 (996)
T KOG0196|consen  497 TTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTL  535 (996)
T ss_pred             cceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeec
Confidence            688999999999999999999999999988877655443

>KOG4194|consensus

Probab=99.29  E-value=2.4e-10  Score=111.53  Aligned_cols=264  Identities=22%  Similarity=0.217  Sum_probs=169.4

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEec--cCCCeEEEEeCCeEeccCC-----cEEEEe--------CCCeEEEEECCC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIG--EPIPTKEWLCNDITIISKD-----RFKIVN--------DDKSTKLKVFDS  489 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~--~p~~~~~W~~~~~~~~~~~-----~~~~~~--------~~~~~~l~i~~l  489 (716)
                      .|+|.+ .+..+..-.|..+.|+|.+.+  ..+..+.|.++........     .+....        ......|.+.++
T Consensus       503 kpqI~~-qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV  581 (873)
T KOG4194|consen  503 KPQIVT-QPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV  581 (873)
T ss_pred             Ccceec-CchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence            455442 344555667899999999976  5666899999876432110     010000        012347899999


Q ss_pred             CCCCceeEEEEEEcCCCce-eeEEEEEEE-EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceee------
Q psy7040         490 KRGDSGIYTLAVKNSWGTD-KGTAKVTVL-GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRV------  561 (716)
Q Consensus       490 ~~~~~~~y~~~a~n~~g~~-~~s~~~~v~-~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~------  561 (716)
                      ...+.|.|.|.+.|..|.. +..+.+++. ...+.-. |.+-.-..-.--+++....+.+.|++.|-+.+....      
T Consensus       582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtkt-P~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eR  660 (873)
T KOG4194|consen  582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKT-PEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARER  660 (873)
T ss_pred             ecccCceEEEEEecccCcchhheeEEEeeccCccccC-cccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhh
Confidence            9999999999999999976 344555554 1122211 111000000112344444455667799988765421      


Q ss_pred             eeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccC
Q psy7040         562 TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMP  641 (716)
Q Consensus       562 ~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~  641 (716)
                      .-....+...+.|.+.++.+.+.|+|.|.|.+|.-.....+.|-+.|..-.   ......|.+.        +-..+.|.
T Consensus       661 Rl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~---PL~~~~V~~g--------et~vlqC~  729 (873)
T KOG4194|consen  661 RLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSI---PLEDQLVVVG--------ETLVLQCL  729 (873)
T ss_pred             eeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccc---cccceEEEec--------ceEEEEEe
Confidence            111234457889999999999999999999999888888888766554211   1222222211        22236777


Q ss_pred             cee-----eEEEEeCCeEeeec----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         642 ISL-----ESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       642 ~~~-----~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      +.|     ...|+|+.+++.-.    ..+..+-+.+.+....|+|.|+|...|..|.-..-..+.+...
T Consensus       730 a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~  798 (873)
T KOG4194|consen  730 AEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQK  798 (873)
T ss_pred             cCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeec
Confidence            776     78999998877554    3455578999999999999999999999998766555555443

>KOG4258|consensus

Probab=99.26  E-value=3.5e-11  Score=121.58  Aligned_cols=359  Identities=14%  Similarity=0.144  Sum_probs=191.5

Q ss_pred             EEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCC--------------CCCeEEccccC-------cccceEEEcCCC
Q psy7040         231 KVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA--------------TGRWTPAGETE-------GPVTGLEVEGLI  289 (716)
Q Consensus       231 ~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~--------------~~~~~~~~~~~-------~~~~~~~i~~L~  289 (716)
                      .......+++.|+|..-...+-....+|.+.++...              +..|.......       +....+.+.+|+
T Consensus       495 ~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~Lk  574 (1025)
T KOG4258|consen  495 SSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLK  574 (1025)
T ss_pred             eeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCC
Confidence            344567789999998644334445778888887642              23344333221       234468899999


Q ss_pred             CCCeEEEEEEEEcCCCCCC-CCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC
Q psy7040         290 PNHKYKFRVRAVNKQGKSE-PLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS  368 (716)
Q Consensus       290 p~~~y~~~v~a~n~~g~~~-~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~  368 (716)
                      |.+.|-|.|++....-... ....+....+++....|.+|..+......++.|.|+|.+|..++| .++.|.|.|+....
T Consensus       575 P~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG-~lt~Ylv~wer~~~  653 (1025)
T KOG4258|consen  575 PWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNG-NLTHYLVVWERQAE  653 (1025)
T ss_pred             ccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCC-ceeEEEEEEEeccC
Confidence            9999999999985332222 114455567777888999999888777777899999999988776 79999999987653


Q ss_pred             CceEEEeeecCC---------CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeec---CCCCCcccccccccE
Q psy7040         369 PIWEKCAQTEGD---------TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA---KKVSPYINRDQLSDI  436 (716)
Q Consensus       369 ~~~~~~~~~~~~---------~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~---~~~~P~~~~~~~~~~  436 (716)
                      .........-..         ...+...+..+-..++      ...|....-.+........   ....-.+...+...+
T Consensus       654 ~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e------~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i  727 (1025)
T KOG4258|consen  654 DGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEME------GHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAI  727 (1025)
T ss_pred             CchHHHhccccccccccccccCCCCchhhcchhhhhc------cCCCCCCCCCcccccCchhhHHHHHHHHHhhhcccee
Confidence            322211111000         1112222222111111      0011100000000000000   000000000000000


Q ss_pred             EEe---------cCCeEEE----EEEEeccCCC-eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040         437 KVR---------AGSNFEF----DINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       437 ~~~---------~g~~~~~----~~~v~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      .+.         .....+.    .......|.- ..+   ...++. ..+-... .++..++.|++|...+.|.+.++|.
T Consensus       728 ~vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t---~p~ei~-e~~p~~~-n~n~~~~vi~~Lrh~tlY~i~l~aC  802 (1025)
T KOG4258|consen  728 FVPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTT---APTEIE-EPKPRLE-NGNKESYVISGLRHFTLYRIDLQAC  802 (1025)
T ss_pred             eecccCcccccccccccceeeccccccccCCCCCCCC---CCcccc-ccCcccc-cccchhhhhhccccchhhhhhHhhh
Confidence            000         0000000    0000000000 000   000000 0000001 2455688899999999999999999


Q ss_pred             cCCCc----eeeEEEEEEE----------------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEc
Q psy7040         503 NSWGT----DKGTAKVTVL----------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRT  556 (716)
Q Consensus       503 n~~g~----~~~s~~~~v~----------------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~  556 (716)
                      |..+.    +..+..+..+                      .+.|+|.+|..+||. |..|.|.++.........-   +
T Consensus       803 nh~~~~~~cS~a~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP~~pNGl-i~~Y~Vk~r~~~~et~v~c---v  878 (1025)
T KOG4258|consen  803 NHATPKCGCSHAAFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEPKEPNGL-ILNYEVKYRRNGDETHVEC---V  878 (1025)
T ss_pred             cccccccccchhhhhhhccccccccccCCCceeEecccCcceEEEecCCCCCCCcc-EEEEEEEEeeccCcchhhh---h
Confidence            87665    2221111111                      899999999999888 9999999986654111110   0


Q ss_pred             cceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee--ccCCCCCC
Q psy7040         557 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV--VTDKPSAP  611 (716)
Q Consensus       557 ~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~--v~~~p~~~  611 (716)
                           .+........+.+.+|.+| .|..+|+|..-+|.|+....+.  |...+.-+
T Consensus       879 -----sR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~v~~~~~~~  929 (1025)
T KOG4258|consen  879 -----SRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFYVSDEDGLQ  929 (1025)
T ss_pred             -----hhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceEEecCcccc
Confidence                 0001111367888889888 5999999999999998877665  44444433

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.26  E-value=1.5e-10  Score=90.29  Aligned_cols=85  Identities=32%  Similarity=0.478  Sum_probs=78.2

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +.++.+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+........|.|.++...|.|.|+|.|.|..|....++
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~   86 (98)
T cd05762           7 PEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQV   86 (98)
T ss_pred             CcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEE
Confidence            45788999999999999999999999999999999877788888777788999999999999999999999999999988


Q ss_pred             EEEEE
Q psy7040         513 KVTVL  517 (716)
Q Consensus       513 ~~~v~  517 (716)
                      .+.|.
T Consensus        87 ~l~V~   91 (98)
T cd05762          87 NLTVV   91 (98)
T ss_pred             EEEEe
Confidence            88776

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.21  E-value=4.1e-10  Score=85.40  Aligned_cols=82  Identities=29%  Similarity=0.526  Sum_probs=72.0

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  513 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~  513 (716)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++.+.|.|.|+|.|.|..|....++.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            467889999999999999999999999999988653 4677766666789999999999999999999999999888877


Q ss_pred             EEE
Q psy7040         514 VTV  516 (716)
Q Consensus       514 ~~v  516 (716)
                      +.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            653

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>KOG4194|consensus

Probab=99.20  E-value=3.9e-10  Score=110.06  Aligned_cols=214  Identities=16%  Similarity=0.228  Sum_probs=151.6

Q ss_pred             CeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEE
Q psy7040         382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL  461 (716)
Q Consensus       382 ~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~  461 (716)
                      ..+.+.++.-.+...|+|.+.|..|..-.....  .   .....|.+. ..+.++.+..|..+.+.|...|.|.|++.|.
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~K--l---tV~~~PsFt-ktP~dltl~tg~mArl~CaAtG~P~PeIawq  647 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAK--L---TVNQAPSFT-KTPEDLTLRTGQMARLECAATGHPRPEIAWQ  647 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeE--E---EeeccCccc-cCcccceeecccceeeeeeccCCCCcceeeh
Confidence            456778888889999999999999964322211  1   222356554 3466889999999999999999999999999


Q ss_pred             eCCeE-eccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEE-EEEEEeCCCCCCC-CceeeEE
Q psy7040         462 CNDIT-IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG-CSLKWNPPEDDGG-APIEYYM  538 (716)
Q Consensus       462 ~~~~~-~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~-v~l~W~~p~~~~~-~~i~~y~  538 (716)
                      +++.. ++.....++........+.|.+++++|.|.|+|.|.|.+|.-+..+++.|.. ..+.  .|..+.- ..-....
T Consensus       648 kdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~--~PL~~~~V~~get~v  725 (873)
T KOG4194|consen  648 KDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFS--IPLEDQLVVVGETLV  725 (873)
T ss_pred             hcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCccc--ccccceEEEecceEE
Confidence            98876 6666666666666677899999999999999999999999999999888881 1111  1111110 0012344


Q ss_pred             EEEEecCCCc-eeeeEEEccceeeeec---cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee
Q psy7040         539 VEKMETDTGK-VLIKWIRTNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  603 (716)
Q Consensus       539 v~~~~~~~~~-~~~~w~~~~~~~~~~~---~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~  603 (716)
                      ++......+. |...|++......-..   ..+...-+.+.+-...+.+.|+|...|..|.-.......
T Consensus       726 lqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~  794 (873)
T KOG4194|consen  726 LQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLL  794 (873)
T ss_pred             EEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEE
Confidence            5555444433 7799999887664222   334456677777778899999999999888644433333

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.20  E-value=3.7e-10  Score=87.45  Aligned_cols=85  Identities=26%  Similarity=0.481  Sum_probs=73.4

Q ss_pred             ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      ++..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+....++.+... +....|.|.++...|.|.|+|.|.|..|....
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            34467899999999999999999999999999999887777777654 44568999999999999999999999999888


Q ss_pred             EEEEEE
Q psy7040         511 TAKVTV  516 (716)
Q Consensus       511 s~~~~v  516 (716)
                      ...+.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            776653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>KOG4258|consensus

Probab=99.15  E-value=2.7e-09  Score=108.36  Aligned_cols=138  Identities=19%  Similarity=0.277  Sum_probs=88.4

Q ss_pred             ceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecC-CC-CCCCCCCCcEEEe-eeCCeEEEEecCCCCCCCccce
Q psy7040         281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKN-PF-NQPGKPGTPEIKD-FDTDFVELAWTPPEQNGGSPIV  357 (716)
Q Consensus       281 ~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~-~~-~~p~~p~~~~~~~-~~~~~i~l~W~~p~~~~~~~i~  357 (716)
                      .++.|.+|...+.|.+.+.|.|..+...--+....+..++ +. .+-.-+..+.-.. ...+++.|+|.+|..++| .|.
T Consensus       782 ~~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP~~pNG-li~  860 (1025)
T KOG4258|consen  782 ESYVISGLRHFTLYRIDLQACNHATPKCGCSHAAFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEPKEPNG-LIL  860 (1025)
T ss_pred             hhhhhhccccchhhhhhHhhhcccccccccchhhhhhhccccccccccCCCceeEecccCcceEEEecCCCCCCCc-cEE
Confidence            3567888999999999999998776521111111111111 10 1111122122222 267899999999988877 689


Q ss_pred             EEEEEEeecCCCceEEEee--ecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEee
Q psy7040         358 GYIIEKKEKYSPIWEKCAQ--TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR  420 (716)
Q Consensus       358 ~y~v~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~  420 (716)
                      .|.|.++..+.........  .........+..|.+| .|.++|+|.+-.|.|.+.+...+....
T Consensus       861 ~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~v~~  924 (1025)
T KOG4258|consen  861 NYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFYVSD  924 (1025)
T ss_pred             EEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceEEec
Confidence            9999999766433222111  1234456778888887 699999999999999998877665543

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.14  E-value=3e-10  Score=87.30  Aligned_cols=83  Identities=37%  Similarity=0.691  Sum_probs=68.4

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc-EEEecc-cCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV-WIPVGK-TREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +||.+|.+..++.+++.|+|++|. .++..+.+|.|+++...... +..... .....+.|.+|.|++.|.|+|+|.+..
T Consensus         1 s~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~   79 (85)
T PF00041_consen    1 SAPENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD   79 (85)
T ss_dssp             SSSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred             CcCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence            356778999999999999999987 45667999999999877665 544433 234699999999999999999999999


Q ss_pred             ccCCCc
Q psy7040         134 GESEPL  139 (716)
Q Consensus       134 g~~~~s  139 (716)
                      |.|.+|
T Consensus        80 g~g~~S   85 (85)
T PF00041_consen   80 GEGPPS   85 (85)
T ss_dssp             EEEEEE
T ss_pred             cCcCCC
Confidence            987654

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.14  E-value=5.5e-10  Score=81.62  Aligned_cols=72  Identities=22%  Similarity=0.391  Sum_probs=60.9

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeCC-CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .|.|.+.|.|.|.+.|++++..+.. ..++.+...+ ....|.|.++...|.|.|+|.|.|..|....++.+.|
T Consensus         2 ~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           2 KLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             EEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            6899999999999999999998864 3566665443 3458999999999999999999999999988887754

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.13  E-value=8.8e-10  Score=85.87  Aligned_cols=83  Identities=24%  Similarity=0.363  Sum_probs=69.8

Q ss_pred             ccEEEecCCeEEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCC-----CeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         434 SDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDD-----KSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      ..+.+..|+.+.|.|.+.+ .|.|.+.|+|++..+.......+...+     ....|.|..+.++|.|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4578999999999999999 999999999999998755444433321     2578999999999999999999999999


Q ss_pred             eeeEEEEEE
Q psy7040         508 DKGTAKVTV  516 (716)
Q Consensus       508 ~~~s~~~~v  516 (716)
                      .+.++.+.|
T Consensus        91 ~~~t~~L~V   99 (101)
T cd04975          91 KSLTFELYV   99 (101)
T ss_pred             EEEEEEEEE
Confidence            888877765

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.12  E-value=1.1e-09  Score=80.87  Aligned_cols=73  Identities=32%  Similarity=0.519  Sum_probs=65.9

Q ss_pred             EEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         444 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       444 ~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      +.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++.+.|.|.|+|.|.|..|..+.++.+.|
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            5789999999999999999999987777888877777889999999999999999999999999888877653

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.12  E-value=1.6e-09  Score=83.96  Aligned_cols=89  Identities=26%  Similarity=0.454  Sum_probs=76.3

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      ||.+. ..+.++.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++...|.|.|+|.|.|.
T Consensus         3 ~~~~~-~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           3 PATIL-TKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCccc-ccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            34444 23467889999999999999999999999999999887777788777777789999999999999999999999


Q ss_pred             CCceeeEEEE
Q psy7040         505 WGTDKGTAKV  514 (716)
Q Consensus       505 ~g~~~~s~~~  514 (716)
                      .|....+..+
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9988776654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.12  E-value=2.7e-10  Score=88.83  Aligned_cols=68  Identities=24%  Similarity=0.362  Sum_probs=59.5

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP  705 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p  705 (716)
                      |.|.+.|    .+.|+|+|+.+..+      .......|.|.++...|+|.|+|.|.|..|...+++.|.|.++|.||
T Consensus        20 l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          20 LFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             EEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence            6677777    89999999988654      12234789999999999999999999999999999999999999988

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG0613|consensus

Probab=99.11  E-value=3e-09  Score=113.99  Aligned_cols=407  Identities=15%  Similarity=0.098  Sum_probs=239.4

Q ss_pred             EEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCCccccceEEecCCC
Q psy7040          72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPY  151 (716)
Q Consensus        72 ~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~p~  151 (716)
                      .++|+.|..+.+.....|.+.........|.........-....++.+...|.+||.+.+..+....+.....-+.-+..
T Consensus         9 ~lr~~r~~~~~~~~~t~~~~~~~s~l~~~r~~~s~~~~~~v~~~~e~~~a~~~~rv~~~~r~~~~~~s~~~~~~~~~pa~   88 (1205)
T KOG0613|consen    9 CLRPDRPGKLVFEAKTTYTVDKLSILPDVRDSGSFIPDYGVLQVKEGETALLTGRVDGEPRPELIWGSSGIEIDMMVPAT   88 (1205)
T ss_pred             ccCcccCCCcccccCCCCCccccccChhhccCCCccccCcceeccCCcceeeeeeeccccccCCCCcccccchhhccccc
Confidence            78899888777778888988777665555544444444566778889999999999998877644433332221111100


Q ss_pred             CcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeE
Q psy7040         152 SKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLK  231 (716)
Q Consensus       152 ~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~  231 (716)
                      .. .                   ...........+.-+..-...+.+.|...-.+..+ ......+.....|..|..+-.
T Consensus        89 ~~-~-------------------~~~~~~~~l~~t~~v~~~~ad~~~~~~~e~~~~i~-~~~~~~v~~~e~pd~~~~~~~  147 (1205)
T KOG0613|consen   89 EY-S-------------------LVTHMNTELGSTWAVGDEYADDRPIHLVERKALID-VVPSPEVCQQEKPDPPPSNRE  147 (1205)
T ss_pred             cc-c-------------------cccccccccccccccccccccccccccccccccCC-ccccchhhhhcCCCCCCCCcc
Confidence            00 0                   00000011122222333334444444444444444 333333333445544444345


Q ss_pred             EeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCc
Q psy7040         232 VSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLT  311 (716)
Q Consensus       232 ~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~  311 (716)
                      ........+...|..+..+++.-...|.++.+..+...|............  +..+.....|.++|.+.+..+...+..
T Consensus       148 sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~--~~~a~~e~~v~~v~s~gqp~~~~~~~~  225 (1205)
T KOG0613|consen  148 SVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDST--DTDAHYESRVRAVVSAGQPEPLERWEI  225 (1205)
T ss_pred             ceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCcc--eeccccceeEEEEEecCCCccchhhhh
Confidence            556677788899999988889889999999988887777655543222222  222333334444444433333222211


Q ss_pred             ccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEee-cCCCceEEEeeecCCCCeEEecCCC
Q psy7040         312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKE-KYSPIWEKCAQTEGDTPKGKVLDLI  390 (716)
Q Consensus       312 ~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~  390 (716)
                      .      .....++..|............+.+.|..+..+....+.+|.++... .+...|......+....+++...-.
T Consensus       226 ~------g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~  299 (1205)
T KOG0613|consen  226 L------GELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKR  299 (1205)
T ss_pred             c------ccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeeccc
Confidence            1      11223333444333333445668888887554444455666665554 3334454444445555666666667


Q ss_pred             CCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCe-EEEEeCCeEecc
Q psy7040         391 EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIIS  469 (716)
Q Consensus       391 ~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~-~~W~~~~~~~~~  469 (716)
                      .+..+.+++...-..|.+.+............+..|.. ......+.+..+..+.+.|.+.+.+.+. +.|++++.....
T Consensus       300 ~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~-~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~  378 (1205)
T KOG0613|consen  300 QGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVG-LVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSE  378 (1205)
T ss_pred             CCcccceeeeEEeeccccccCchhhhhhccCCcccccc-ccccceeccccCcceeecccccCCcCCchheeecccccccc
Confidence            77888888888888887766554433333222222221 2234455666677788888888888887 899988776654


Q ss_pred             CC--cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         470 KD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       470 ~~--~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      ..  ..........+.+.+.++.++..|.++|.|.|..|..
T Consensus       379 ~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~  419 (1205)
T KOG0613|consen  379 SLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTE  419 (1205)
T ss_pred             cccccccccccccCcchhhhhcCcccccccccceeccCCcc
Confidence            44  3445556677889999999999999999999988754

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.10  E-value=1.7e-09  Score=83.95  Aligned_cols=84  Identities=31%  Similarity=0.541  Sum_probs=78.4

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +.++.+..|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..|....++
T Consensus         7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~   86 (90)
T PF07679_consen    7 PKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV   86 (90)
T ss_dssp             SSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence            46789999999999999999999999999999999999999999888999999999999999999999999999988888


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+.|
T Consensus        87 ~l~V   90 (90)
T PF07679_consen   87 NLTV   90 (90)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            7764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.10  E-value=2.2e-09  Score=82.71  Aligned_cols=83  Identities=17%  Similarity=0.252  Sum_probs=69.9

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +.+..+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++.+.|.|.|+|.|.|..|....++
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~   86 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV   86 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence            34566899999999999999999999999999887655444444444567899999999999999999999999988887


Q ss_pred             EEE
Q psy7040         513 KVT  515 (716)
Q Consensus       513 ~~~  515 (716)
                      .+.
T Consensus        87 ~L~   89 (90)
T cd04972          87 QVT   89 (90)
T ss_pred             EEe
Confidence            765

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.08  E-value=1.3e-09  Score=79.87  Aligned_cols=73  Identities=26%  Similarity=0.409  Sum_probs=60.7

Q ss_pred             EEEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeCC-CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         444 FEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       444 ~~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      +.|.|.+.|.|.|.+.|++++..+.. ..++.+...+ ....|.|.++.++|.|.|+|.|.|..|..+.++.+.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            36899999999999999999988864 3455555443 3347999999999999999999999999988887754

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.08  E-value=1.2e-09  Score=79.58  Aligned_cols=73  Identities=22%  Similarity=0.399  Sum_probs=62.8

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      |..+.|.|.+.+.|.+.+.|++++..+....++.+...   ..|.|.++.+.|.|.|+|.|.|..|....++.+.+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            56789999999999999999999988776666665432   37999999999999999999999999988887753

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.06  E-value=9.1e-10  Score=84.55  Aligned_cols=83  Identities=31%  Similarity=0.562  Sum_probs=69.2

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  406 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g  406 (716)
                      +|.++.+...+.+++.|+|.+|. ..++.+.+|.|+++...................+.|.+|.|++.|.|+|+|.|..|
T Consensus         2 ~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g   80 (85)
T PF00041_consen    2 APENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDG   80 (85)
T ss_dssp             SSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred             cCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence            57889999999999999999976 45668999999999887665333344555666999999999999999999999999


Q ss_pred             CCCC
Q psy7040         407 PGEP  410 (716)
Q Consensus       407 ~~~~  410 (716)
                      .|++
T Consensus        81 ~g~~   84 (85)
T PF00041_consen   81 EGPP   84 (85)
T ss_dssp             EEEE
T ss_pred             CcCC
Confidence            7754

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.06  E-value=1.8e-09  Score=82.39  Aligned_cols=80  Identities=25%  Similarity=0.405  Sum_probs=67.4

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++.  ..  ...|.|.++.++|.|.|+|.|.|..|....++
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   83 (88)
T cd05851           8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--MS--GAVLKIFNIQPEDEGTYECEAENIKGKDKHQA   83 (88)
T ss_pred             cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--cC--CCEEEECcCChhhCEEEEEEEEcCCCceEEEE
Confidence            446778999999999999999999999999988765443332  22  34799999999999999999999999998888


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+.|
T Consensus        84 ~l~V   87 (88)
T cd05851          84 RVYV   87 (88)
T ss_pred             EEEE
Confidence            7765

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.05  E-value=3.8e-09  Score=82.61  Aligned_cols=83  Identities=18%  Similarity=0.367  Sum_probs=69.2

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      ..+..+..|+.+.|.|.+.|.|.+.+.|++++..+... .++.+  ......|.|.++...|.|.|+|.|.|..|....+
T Consensus        10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (95)
T cd05730          10 EVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAE   87 (95)
T ss_pred             ccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence            34567899999999999999999999999999887654 33332  3345579999999999999999999999998888


Q ss_pred             EEEEEE
Q psy7040         512 AKVTVL  517 (716)
Q Consensus       512 ~~~~v~  517 (716)
                      +.+.|.
T Consensus        88 ~~L~V~   93 (95)
T cd05730          88 IHLKVF   93 (95)
T ss_pred             EEEEEE
Confidence            877663

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.04  E-value=1.3e-09  Score=83.08  Aligned_cols=68  Identities=21%  Similarity=0.336  Sum_probs=57.4

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                      |.|.+.|    .+.|++++..+....           ......|.|.++...|+|.|+|.|.|..|....+..|.|..+|
T Consensus         6 l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P   85 (88)
T cd05735           6 MSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPP   85 (88)
T ss_pred             EEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCC
Confidence            6777777    899999998774431           1122679999999999999999999999999999999999999


Q ss_pred             CCC
Q psy7040         703 SAP  705 (716)
Q Consensus       703 ~~p  705 (716)
                      .+|
T Consensus        86 ~~P   88 (88)
T cd05735          86 DPP   88 (88)
T ss_pred             CCC
Confidence            887

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.04  E-value=1.7e-09  Score=79.68  Aligned_cols=74  Identities=23%  Similarity=0.371  Sum_probs=62.7

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      +|+.+.|.|.+.|.|.|.+.|++++..+....++.+..   ...|.|.++.+.|.|.|+|.|.|..|....++.+.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            47889999999999999999999998876655544432   238999999999999999999999999888877653

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.02  E-value=4.7e-09  Score=82.00  Aligned_cols=82  Identities=24%  Similarity=0.268  Sum_probs=68.0

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC------CCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND------DKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      ...+..+..+.|.|.+.|.|.|.+.|++++..+...........      .....|.|.++...|.|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            46677889999999999999999999999999876554332211      224689999999999999999999999999


Q ss_pred             eeEEEEEE
Q psy7040         509 KGTAKVTV  516 (716)
Q Consensus       509 ~~s~~~~v  516 (716)
                      +.++.+.+
T Consensus        92 ~~t~~l~V   99 (101)
T cd05859          92 SYTFALQI   99 (101)
T ss_pred             EEEEEEEE
Confidence            88887765

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.01  E-value=6.9e-09  Score=80.02  Aligned_cols=84  Identities=25%  Similarity=0.459  Sum_probs=71.4

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCC-CeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+.... ....|.|.++.+.|.|.|+|.|.|..|....+
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence            34678999999999999999999999999999988776666655433 33579999999999999999999999999888


Q ss_pred             EEEEE
Q psy7040         512 AKVTV  516 (716)
Q Consensus       512 ~~~~v  516 (716)
                      +.+.+
T Consensus        88 ~~v~~   92 (92)
T cd05891          88 VTVSV   92 (92)
T ss_pred             EEEEC
Confidence            77753

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.01  E-value=5.2e-09  Score=77.06  Aligned_cols=72  Identities=24%  Similarity=0.353  Sum_probs=60.1

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .|.|.+.|.|.|.+.|++++..+.. ..++.+... .....|.|.++...|.|.|+|.|.|..|....++.+.|
T Consensus         2 ~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           2 RLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             EEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            6899999999999999999988864 345555443 34457999999999999999999999999888877653

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.00  E-value=5.9e-09  Score=77.74  Aligned_cols=74  Identities=27%  Similarity=0.369  Sum_probs=63.9

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      |+.+.|.|.+.+.|.|.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|.......+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            56789999999999999999999988877677777766667899999999999999999999999987655443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.98  E-value=6.2e-09  Score=75.87  Aligned_cols=70  Identities=31%  Similarity=0.604  Sum_probs=59.6

Q ss_pred             EEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         444 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       444 ~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      +.|.|.+.|.|.|.+.|++++..+....++.+...+   .+.|.++.+.|.|.|+|.|.|..|....++.+.+
T Consensus         2 v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           2 VIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             EEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            579999999999999999999888766666655443   4778899999999999999999999988877653

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.98  E-value=6.3e-09  Score=79.92  Aligned_cols=81  Identities=22%  Similarity=0.336  Sum_probs=67.5

Q ss_pred             ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      .+.+..+..|..+.|.|.+.+.|.+.+.|++++..+.......    .....|.|.++..+|.|.|+|.|.|..|....+
T Consensus         7 ~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   82 (88)
T cd04968           7 FPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQ   82 (88)
T ss_pred             CCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence            3456778899999999999999999999999887664443332    124589999999999999999999999999888


Q ss_pred             EEEEE
Q psy7040         512 AKVTV  516 (716)
Q Consensus       512 ~~~~v  516 (716)
                      ..+.+
T Consensus        83 ~~l~V   87 (88)
T cd04968          83 GRIYV   87 (88)
T ss_pred             EEEEE
Confidence            87765

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.97  E-value=4.8e-09  Score=74.27  Aligned_cols=64  Identities=22%  Similarity=0.341  Sum_probs=54.5

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .|.|.+.|.|.|.+.|+|++..+...        .....|.|.++..+|.|.|+|.|.|..|....+..+.+
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           2 KLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             EEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            68999999999999999999887521        23558999999999999999999999998777666554

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.96  E-value=1.4e-08  Score=77.50  Aligned_cols=81  Identities=23%  Similarity=0.485  Sum_probs=67.3

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeC-CeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee-e
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN-DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-G  510 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~-~  510 (716)
                      +.++.+..|+.+.|.|.+.|.|. .+.|+++ +..+....++.+...+....|.|.++...|.|.|+|.|.|..|... .
T Consensus         7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   85 (92)
T cd05866           7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA   85 (92)
T ss_pred             ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence            34677899999999999999998 9999984 6666666677777666677999999999999999999999999763 3


Q ss_pred             EEEE
Q psy7040         511 TAKV  514 (716)
Q Consensus       511 s~~~  514 (716)
                      +..+
T Consensus        86 ~i~l   89 (92)
T cd05866          86 TVVL   89 (92)
T ss_pred             EEEE
Confidence            4444

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.96  E-value=8e-09  Score=78.47  Aligned_cols=80  Identities=28%  Similarity=0.519  Sum_probs=68.4

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +.+..+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+.    ...|.|.++...|.|.|+|.|.|..|....++
T Consensus         6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   81 (85)
T cd05728           6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYASA   81 (85)
T ss_pred             CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence            44678999999999999999999999999999988765555543    23799999999999999999999999988877


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+.+
T Consensus        82 ~l~V   85 (85)
T cd05728          82 ELAV   85 (85)
T ss_pred             EEEC
Confidence            7653

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.95  E-value=1.1e-08  Score=80.22  Aligned_cols=83  Identities=20%  Similarity=0.321  Sum_probs=66.9

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeC--CeEecc-----CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITIIS-----KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      +.+..+.+|+.+.|.|.+.|.|.|.+.|++.  +..+..     ..++.+........|.|.++.++|.|.|.|.|.|..
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   87 (98)
T cd05870           8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI   87 (98)
T ss_pred             eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence            4578899999999999999999999999994  333321     234555444456789999999999999999999999


Q ss_pred             CceeeEEEEE
Q psy7040         506 GTDKGTAKVT  515 (716)
Q Consensus       506 g~~~~s~~~~  515 (716)
                      |....++.+.
T Consensus        88 G~~~~~~~l~   97 (98)
T cd05870          88 GGHQKSMYLD   97 (98)
T ss_pred             CcceeEEEEe
Confidence            9888777664

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.95  E-value=8.4e-09  Score=76.25  Aligned_cols=75  Identities=23%  Similarity=0.294  Sum_probs=60.6

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccCCc-EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      |..+.|.|.+.|.|.|.+.|++++..+..... .....+  ...+.|.++.+.|.|.|+|.|.|..|....++.+.|+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~--~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVD--GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEec--CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            46779999999999999999999988753322 112222  2378899999999999999999999999999888763

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.94  E-value=1.5e-08  Score=78.38  Aligned_cols=82  Identities=27%  Similarity=0.475  Sum_probs=65.1

Q ss_pred             cEEEecCCeEEEEEEEeccCC-CeEEEEe-CCeEecc-CCcEEEEe-CCCeEEEEECCCCCCCceeEEEEEEcCC-Ccee
Q psy7040         435 DIKVRAGSNFEFDINVIGEPI-PTKEWLC-NDITIIS-KDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSW-GTDK  509 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~-~~~~W~~-~~~~~~~-~~~~~~~~-~~~~~~l~i~~l~~~~~~~y~~~a~n~~-g~~~  509 (716)
                      ...+..|+.+.|.|.+.|.|. +.+.|++ ++..+.. ..++.+.. ++....|.|.++.+.|.|.|+|.|.|.. |...
T Consensus         9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~   88 (96)
T cd05865           9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE   88 (96)
T ss_pred             ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence            456889999999999999995 7999998 6665544 33444433 3345789999999999999999999996 8888


Q ss_pred             eEEEEEE
Q psy7040         510 GTAKVTV  516 (716)
Q Consensus       510 ~s~~~~v  516 (716)
                      .++.+.+
T Consensus        89 ~s~~l~v   95 (96)
T cd05865          89 ATVNVKI   95 (96)
T ss_pred             EEEEEEE
Confidence            8877665

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.94  E-value=2.8e-07  Score=90.04  Aligned_cols=219  Identities=11%  Similarity=0.019  Sum_probs=122.9

Q ss_pred             ceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCC--CCCccceE
Q psy7040         281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQ--NGGSPIVG  358 (716)
Q Consensus       281 ~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~--~~~~~i~~  358 (716)
                      ..+.|.+....+.+.|.|.|.|..|....+.... +....+......+....+  .......+.|.....  .++.+   
T Consensus        82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~-V~~~~~~~~~~~~~~~~~--~~g~~~~i~C~~~~~~~~~~~~---  155 (326)
T PHA02785         82 SNMLILNPTQSDSGIYICITKNETYCDMMSLNLT-IVSVSESNIDLISYPQIV--NERSTGEMVCPNINAFIASNVN---  155 (326)
T ss_pred             ceEEEcccCcccCeEEEEEEECCCcceEEEEEEE-EEecCCCccceeecccee--cccCcEEEECCChhhcccCCCC---
Confidence            4577889999999999999999876543222111 111111000000111111  122334555542100  00100   


Q ss_pred             EEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCC-CCceEeecCCCCCcccccccccEE
Q psy7040         359 YIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP-TAPHIARAKKVSPYINRDQLSDIK  437 (716)
Q Consensus       359 y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~-~~~~~~~~~~~~P~~~~~~~~~~~  437 (716)
                      -.|.|............  ......+.|.++...+.+.|.|.|.|..|.-..... .....+..+..+|.+.  .+..+.
T Consensus       156 ~~i~W~k~~~~~~~r~~--~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~--~p~~~~  231 (326)
T PHA02785        156 ADIIWSGHRRLRNKRLK--QRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ--LPEGVV  231 (326)
T ss_pred             ceEEEccCCccCCcceE--ecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec--CCCcEE
Confidence            11222111100000111  112357899999999999999999998775332111 0111222233455432  235677


Q ss_pred             EecCCeEEEEEEEeccCCC---eEEEEeCCeEeccCC-----cEEEEeCC--------CeEEEEECCCCCCCceeEEEEE
Q psy7040         438 VRAGSNFEFDINVIGEPIP---TKEWLCNDITIISKD-----RFKIVNDD--------KSTKLKVFDSKRGDSGIYTLAV  501 (716)
Q Consensus       438 ~~~g~~~~~~~~v~~~p~~---~~~W~~~~~~~~~~~-----~~~~~~~~--------~~~~l~i~~l~~~~~~~y~~~a  501 (716)
                      +..|..+.|.|.+.+.|.+   .+.|.+++..+...+     ++......        ....|.|.+++.+|.|.|+|.|
T Consensus       232 ~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A  311 (326)
T PHA02785        232 TSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMA  311 (326)
T ss_pred             ecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEE
Confidence            7889999999999998874   799999998775321     22221110        1357999999999999999999


Q ss_pred             EcCCCcee
Q psy7040         502 KNSWGTDK  509 (716)
Q Consensus       502 ~n~~g~~~  509 (716)
                      .|..|...
T Consensus       312 ~n~~~~~~  319 (326)
T PHA02785        312 FTIPSISK  319 (326)
T ss_pred             EeccCceE
Confidence            99885443

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.94  E-value=4.2e-08  Score=89.17  Aligned_cols=79  Identities=19%  Similarity=0.152  Sum_probs=54.1

Q ss_pred             ccEEEecCCeEEEEEEEeccC-----------CCeEEEEeCCeEe--c-cCCc---EEEEe---CCCeEEEEECCCCCCC
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP-----------IPTKEWLCNDITI--I-SKDR---FKIVN---DDKSTKLKVFDSKRGD  493 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p-----------~~~~~W~~~~~~~--~-~~~~---~~~~~---~~~~~~l~i~~l~~~~  493 (716)
                      ..+.+.+|+++.|.|.+.+.+           .+.+.|++.+...  . .+.+   ..+..   ......|.|.++...|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            346788999999999986643           4589999987542  1 1111   00000   1124589999999999


Q ss_pred             ceeEEEEEEcCCCceeeEE
Q psy7040         494 SGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       494 ~~~y~~~a~n~~g~~~~s~  512 (716)
                      .|.|+|.|.|..|....+.
T Consensus       110 sG~Y~C~a~N~~~~~~~~i  128 (227)
T PHA02826        110 EGIYICTISSGNICEESTI  128 (227)
T ss_pred             CEEEEEEEEECCcceEEEE
Confidence            9999999999776554443

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.93  E-value=3e-09  Score=77.77  Aligned_cols=61  Identities=21%  Similarity=0.230  Sum_probs=50.7

Q ss_pred             eccCcee----eEEEEeCCeEeeecc--------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN--------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~--------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+|+++.+..+.        .....+|.|.++..+|+|.|+|.|.|.+|...++++|.|
T Consensus         3 l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           3 LECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             EEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            6788888    999999999886321        111237999999999999999999999999999998875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.93  E-value=1.1e-08  Score=75.19  Aligned_cols=73  Identities=23%  Similarity=0.415  Sum_probs=62.6

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      |..+.|.|.+.+.|.+.+.|++++..+....++.+...   ..|.|.++.+.|.|.|+|.|.|..|....++.+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            56789999999999999999999998877666665332   36999999999999999999999999988877754

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.92  E-value=1.9e-08  Score=78.96  Aligned_cols=84  Identities=19%  Similarity=0.310  Sum_probs=68.0

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-----CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      +.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+...     .++.+........|.|.++...|.|.|.|.|.|..|.
T Consensus         8 ~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   87 (96)
T cd05732           8 LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG   87 (96)
T ss_pred             cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC
Confidence            44677889999999999999999999999988655432     2334433445678999999999999999999999999


Q ss_pred             eeeEEEEEE
Q psy7040         508 DKGTAKVTV  516 (716)
Q Consensus       508 ~~~s~~~~v  516 (716)
                      ...++.+.+
T Consensus        88 ~~~s~~l~v   96 (96)
T cd05732          88 DQQSMYLEV   96 (96)
T ss_pred             cEEEEEEeC
Confidence            888776653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.91  E-value=2e-08  Score=76.69  Aligned_cols=81  Identities=26%  Similarity=0.362  Sum_probs=66.0

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcE-EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF-KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      ..+..|..+.|.|.+.+.|.+.+.|++++..+...... ..........|.|.++.+.|.|.|+|.|.|..|....++.+
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            35778999999999999999999999999988654432 12222345579999999999999999999999998888776


Q ss_pred             EE
Q psy7040         515 TV  516 (716)
Q Consensus       515 ~v  516 (716)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            53

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.91  E-value=1.6e-08  Score=75.26  Aligned_cols=71  Identities=23%  Similarity=0.375  Sum_probs=57.8

Q ss_pred             EEEEEeccCCCeEEEEeCCeEeccCCcEEEEe-------CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         446 FDINVIGEPIPTKEWLCNDITIISKDRFKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       446 ~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      +.|.+.|.|.|.++|++++..+..........       ......|.|.++.+.|.|.|+|.|.|..|....+..+..
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            67899999999999999999987665433221       123557999999999999999999999999888776653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.91  E-value=4.7e-09  Score=74.29  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             eccCcee----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|+|+|+.+...  .....|.|.++..+|+|.|+|.|.|..|....+..+.+.
T Consensus         3 l~c~v~g~P~P~v~W~kdg~~l~~~--~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           3 LPVKVAAYPPPEFQWYKDGKLISGK--HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             EEEEEEEeCCCEEEEEECCEECccc--CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            5677777    89999999988633  234699999999999999999999999988877777664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.90  E-value=4.6e-09  Score=78.18  Aligned_cols=65  Identities=17%  Similarity=0.218  Sum_probs=53.6

Q ss_pred             eccCcee------eEEEEeCCeEeeec--cc--------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         638 SLMPISL------ESQYLMNDKRVTID--NV--------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       638 ~~~~~~~------~~~W~~~~~~~~~~--~~--------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      |.|.+.+      .+.|+++|+.+...  ..        .....|.|.+++..|+|+|+|.|.|.++...+++.|.|..|
T Consensus         5 l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~p   84 (85)
T cd05853           5 LPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGP   84 (85)
T ss_pred             EEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecC
Confidence            5565543      88999999999632  11        12347999999999999999999999999999999999988


Q ss_pred             C
Q psy7040         702 P  702 (716)
Q Consensus       702 p  702 (716)
                      |
T Consensus        85 P   85 (85)
T cd05853          85 P   85 (85)
T ss_pred             C
Confidence            7

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.90  E-value=7.1e-09  Score=78.39  Aligned_cols=65  Identities=20%  Similarity=0.214  Sum_probs=53.7

Q ss_pred             eccCcee------eEEEEeCCeEeeecc----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         638 SLMPISL------ESQYLMNDKRVTIDN----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       638 ~~~~~~~------~~~W~~~~~~~~~~~----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      |.|.+.|      .+.|+++|..+....          ......|.|.+++..|+|.|+|.|.|.+|...+++.|.|..|
T Consensus         5 L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~   84 (85)
T cd05854           5 LQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGP   84 (85)
T ss_pred             EEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECC
Confidence            6676666      579999998875421          112368999999999999999999999999999999999987


Q ss_pred             C
Q psy7040         702 P  702 (716)
Q Consensus       702 p  702 (716)
                      |
T Consensus        85 P   85 (85)
T cd05854          85 P   85 (85)
T ss_pred             C
Confidence            6

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.89  E-value=3.1e-08  Score=73.44  Aligned_cols=74  Identities=27%  Similarity=0.370  Sum_probs=60.0

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccCCc-EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      |+.+.|.|.+.|.|.|.+.|++++..+..... ......  ...|.|.++.+.|.|.|.|.|.|..|.....+.+.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS--SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee--CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            56789999999999999999999988764321 122222  347999999999999999999999999888877765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.89  E-value=5e-09  Score=76.77  Aligned_cols=61  Identities=18%  Similarity=0.143  Sum_probs=50.3

Q ss_pred             eccCcee----eEEEEeCCeEeeeccc--------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNV--------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~--------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+|++..+.....        .....|.|.++.++|+|.|+|.|.|.+|+.+.++.|.|
T Consensus         3 l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           3 LECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             EEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            6788888    9999999988764311        11136999999999999999999999999999998875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.89  E-value=1.5e-08  Score=75.45  Aligned_cols=75  Identities=23%  Similarity=0.248  Sum_probs=61.5

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      |+.+.|.|.+.+.|.|.+.|++++..+....... ........|.|.++...|.|.|+|.|.|..|....++.+.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            5678999999999999999999998876543321 12223458999999999999999999999999988887765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.89  E-value=3.4e-08  Score=77.30  Aligned_cols=81  Identities=19%  Similarity=0.331  Sum_probs=64.7

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-----CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+...     .++.+........|.|.++...|.|.|+|.|.|..|....
T Consensus        12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   91 (97)
T cd05869          12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ   91 (97)
T ss_pred             eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence            34556899999999999999999999988765432     2333344444568999999999999999999999999988


Q ss_pred             EEEEEE
Q psy7040         511 TAKVTV  516 (716)
Q Consensus       511 s~~~~v  516 (716)
                      ++.+.|
T Consensus        92 ~~~l~v   97 (97)
T cd05869          92 SMYLEV   97 (97)
T ss_pred             EEEEEC
Confidence            877654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.88  E-value=1.3e-08  Score=73.08  Aligned_cols=67  Identities=19%  Similarity=0.444  Sum_probs=55.9

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .+.|.+.|.|.|.+.|++++..+.....+  .   ....|.|.++.+.|.|.|+|.|.|..|......++.+
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            57899999999999999999998654332  1   2347999999999999999999999998877666654

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.88  E-value=2.1e-08  Score=73.48  Aligned_cols=70  Identities=23%  Similarity=0.403  Sum_probs=57.1

Q ss_pred             EEEEEeccCCCeEEEEeCCeEeccCCcEEE--Ee---CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE
Q psy7040         446 FDINVIGEPIPTKEWLCNDITIISKDRFKI--VN---DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  515 (716)
Q Consensus       446 ~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~--~~---~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~  515 (716)
                      +.|.+.|.|.|.+.|++++..+..+.....  ..   ......|.|.++.+.|.|.|+|.|.|..|....+..+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            678899999999999999999976654322  11   22356899999999999999999999999888776654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.87  E-value=1.3e-08  Score=73.64  Aligned_cols=67  Identities=21%  Similarity=0.382  Sum_probs=57.6

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      .|.|.+.|.|.|.+.|++++..+....++.+..   ...|.|.++.+.|.|.|+|.|.|..|..+.+..+
T Consensus         2 ~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           2 QIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             EeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            689999999999999999998887666665533   3479999999999999999999999998877665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.87  E-value=1.9e-08  Score=73.12  Aligned_cols=68  Identities=25%  Similarity=0.370  Sum_probs=57.0

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .|.|.+.|.|.|.+.|++++..+....++.  .  ....|.|.++.+.|.|.|+|.|.|..|....+..+.+
T Consensus         2 ~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--~--~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           2 RLPVKVKAYPPPEIQWYKNGKLISEKNRTK--K--SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCCCEEE--c--CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            688999999999999999999887664332  2  2458999999999999999999999998777766654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.86  E-value=5.2e-08  Score=74.30  Aligned_cols=77  Identities=27%  Similarity=0.466  Sum_probs=63.3

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEe----CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVN----DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  515 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~----~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~  515 (716)
                      |+.+.|.|.+.+.|.+.+.|++++..+... .++.+..    ......|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            567899999999999999999999877543 3554442    12236899999999999999999999999998888777


Q ss_pred             EE
Q psy7040         516 VL  517 (716)
Q Consensus       516 v~  517 (716)
                      +.
T Consensus        81 V~   82 (88)
T cd05735          81 VQ   82 (88)
T ss_pred             Ee
Confidence            65

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.85  E-value=3e-08  Score=73.70  Aligned_cols=73  Identities=25%  Similarity=0.388  Sum_probs=61.3

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .|.|.+.+.|.+.+.|++++..+.......+...+....|.|.++...|.|.|+|.|.|..|....++.+.|.
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            6889999999999999999998865544444444556689999999999999999999999998888877653

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.83  E-value=4.2e-08  Score=73.22  Aligned_cols=76  Identities=16%  Similarity=0.357  Sum_probs=63.8

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      ...+..|+.+.|.|.+.+. .+.+.|++++..+....++.+..    ..|.|.++.++|+|.|+|.|.|..|.....+.+
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~----~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v   77 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITG----EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV   77 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeC----CEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence            4678899999999999986 56899999999887766665532    379999999999999999999999887766655


Q ss_pred             E
Q psy7040         515 T  515 (716)
Q Consensus       515 ~  515 (716)
                      .
T Consensus        78 ~   78 (79)
T cd04973          78 N   78 (79)
T ss_pred             e
Confidence            4

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.82  E-value=6.3e-08  Score=74.20  Aligned_cols=80  Identities=14%  Similarity=0.244  Sum_probs=63.9

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee-eE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~-~s  511 (716)
                      ..++.+.+|+.+.|.|.+.+. .+.+.|++++..+... ++.+.  .....|.|.++.+.|.|.|.|.|.|..|... ..
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~   85 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP   85 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence            345688999999999999999 9999999999887543 33333  3345899999999999999999999999753 35


Q ss_pred             EEEEE
Q psy7040         512 AKVTV  516 (716)
Q Consensus       512 ~~~~v  516 (716)
                      +.+.|
T Consensus        86 ~~L~V   90 (91)
T cd05740          86 YILNV   90 (91)
T ss_pred             EEEEe
Confidence            55544

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.81  E-value=2.3e-08  Score=73.96  Aligned_cols=72  Identities=21%  Similarity=0.343  Sum_probs=55.4

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEec-cCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .|.|.+.|.|.|.+.|++++.... .....++........|.|.++.++|.|.|+|.|.|..|....++.+.|
T Consensus         2 ~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             EeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            688999999999999999886422 111112222223347999999999999999999999999888887766

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.81  E-value=2.2e-08  Score=73.40  Aligned_cols=60  Identities=13%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  697 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~  697 (716)
                      +.|.+.|    +++|+|+|+++..+.           ......|.|.++...|+|.|+|.|.|..|+...+..+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            4566677    999999999986541           12335799999999999999999999999998887765

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.81  E-value=1.4e-08  Score=73.01  Aligned_cols=62  Identities=18%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      +.|.+.|    .+.|+|+|+++.... ......|.|.++.+.|+|.|+|.|.|..|..+....+++.
T Consensus         3 ~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           3 IPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             EEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            5677777    899999999886541 1122579999999999999999999999988877776654

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.80  E-value=4.2e-08  Score=72.75  Aligned_cols=65  Identities=20%  Similarity=0.455  Sum_probs=53.0

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCC-cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKD-RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      .|.|.+.|.|.|.+.|++++..+.... .+.+.  .....|.|.++.+.|.|.|.|.|.|..|....+
T Consensus         2 ~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   67 (77)
T cd05760           2 TLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSS   67 (77)
T ss_pred             EEEEEeeecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeC
Confidence            689999999999999999999876543 33332  234589999999999999999999999976443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.80  E-value=1.4e-08  Score=74.02  Aligned_cols=61  Identities=15%  Similarity=0.080  Sum_probs=50.3

Q ss_pred             eccCcee----eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    ++.|++++..+..+   .......|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus         6 l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           6 IECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             EEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            6777777    89999999877544   1112358999999999999999999999999999988865

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.79  E-value=2.1e-08  Score=73.85  Aligned_cols=61  Identities=20%  Similarity=0.135  Sum_probs=50.2

Q ss_pred             eccCcee----eEEEEeCCeEeeeccc--------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNV--------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~--------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+|++..+.....        ....+|.|.++...|+|.|+|.|.|.+|...+++.|.|
T Consensus         3 L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           3 LECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             EEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            6777777    8999999988864311        11236999999999999999999999999999988875

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.79  E-value=1.9e-08  Score=76.53  Aligned_cols=65  Identities=20%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             eccCcee------eEEEEeCCeEeeecc----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         638 SLMPISL------ESQYLMNDKRVTIDN----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       638 ~~~~~~~------~~~W~~~~~~~~~~~----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      |.|.+.|      .+.|+++|..+....          ......|.|.+++..|+|.|+|.|.|..|....++.|.|..|
T Consensus         5 L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p   84 (85)
T cd04970           5 LQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGP   84 (85)
T ss_pred             EEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECC
Confidence            5666665      568999998875331          112367999999999999999999999999999999999987


Q ss_pred             C
Q psy7040         702 P  702 (716)
Q Consensus       702 p  702 (716)
                      |
T Consensus        85 P   85 (85)
T cd04970          85 P   85 (85)
T ss_pred             C
Confidence            6

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.79  E-value=4.3e-08  Score=71.41  Aligned_cols=69  Identities=23%  Similarity=0.279  Sum_probs=56.6

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .|.|.+.|.|.|.+.|++++..+.... ...  ......|.|.++.+.|.|.|+|.|.|..|....+..+.|
T Consensus         2 ~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           2 VLECIAEGLPTPEVHWDRIDGPLSPNR-TKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             EEEEEeeEecCCeEEEEECCcCCCCCc-eeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            588999999999999999987765432 222  223568999999999999999999999999888877765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.79  E-value=1.1e-07  Score=71.91  Aligned_cols=75  Identities=16%  Similarity=0.312  Sum_probs=60.0

Q ss_pred             eEEEEEEEeccCCC--eEEEEeCCeEeccC---CcEE-EEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         443 NFEFDINVIGEPIP--TKEWLCNDITIISK---DRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       443 ~~~~~~~v~~~p~~--~~~W~~~~~~~~~~---~~~~-~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .+.|.|.+.+.|.+  .+.|++++..+...   .++. +........|.|.+++..|.|.|+|.|.|..|....++.+.|
T Consensus         2 ~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V   81 (85)
T cd05854           2 NLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVV   81 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEE
Confidence            56899999999987  57999999887532   2332 222234568999999999999999999999999999888876


Q ss_pred             E
Q psy7040         517 L  517 (716)
Q Consensus       517 ~  517 (716)
                      .
T Consensus        82 ~   82 (85)
T cd05854          82 R   82 (85)
T ss_pred             E
Confidence            4

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.79  E-value=2.5e-08  Score=73.59  Aligned_cols=61  Identities=28%  Similarity=0.392  Sum_probs=50.7

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|..+..+      .......|.|.++.+.|+|.|+|.|.|..|..+.++.|.|
T Consensus         4 l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           4 LEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             EEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            6777777    99999999987443      1223468999999999999999999999999988887764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.78  E-value=1.6e-08  Score=73.65  Aligned_cols=61  Identities=16%  Similarity=0.199  Sum_probs=50.0

Q ss_pred             eccCcee----eEEEEeCCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|..+....   ......+.|.++.++|.|.|+|.|.|..|....++.|.|
T Consensus         4 l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           4 FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             EEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            6787777    999999998876541   112246889999999999999999999999999888864

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.77  E-value=1.7e-07  Score=73.45  Aligned_cols=81  Identities=15%  Similarity=0.256  Sum_probs=65.0

Q ss_pred             ccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEeccC--CcEEEEeC----CCeEEEEECCCCC-CCceeEEEEEEcCC
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISK--DRFKIVND----DKSTKLKVFDSKR-GDSGIYTLAVKNSW  505 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~l~~-~~~~~y~~~a~n~~  505 (716)
                      ....+..|..+.|.|.+.+.|.| .+.|++++..+...  .++.+...    +....|.|.++.. ++.|.|.|.|.|..
T Consensus         9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~   88 (98)
T cd05758           9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF   88 (98)
T ss_pred             CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence            45668899999999999999999 69999999887643  45655443    2335899999999 45899999999999


Q ss_pred             CceeeEEEE
Q psy7040         506 GTDKGTAKV  514 (716)
Q Consensus       506 g~~~~s~~~  514 (716)
                      |.....+.+
T Consensus        89 G~~~~~~~L   97 (98)
T cd05758          89 GSGTAIISL   97 (98)
T ss_pred             CcccEEEEe
Confidence            998776654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.76  E-value=2e-07  Score=74.35  Aligned_cols=78  Identities=17%  Similarity=0.262  Sum_probs=62.2

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeC----CCeEEEEECCCC-CCCceeEEEEEEcCCCceeeEEE
Q psy7040         440 AGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND----DKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDKGTAK  513 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~----~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~~s~~  513 (716)
                      .|..+.|.|.+.|.|.+.+.|++++..+.. ..++.+...    .....|.|.++. ..|.|.|+|.|.|..|....++.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            457899999999999999999999988763 334443321    124679999997 58999999999999999888777


Q ss_pred             EEEE
Q psy7040         514 VTVL  517 (716)
Q Consensus       514 ~~v~  517 (716)
                      +.+.
T Consensus       102 L~~~  105 (109)
T cd05773         102 LVST  105 (109)
T ss_pred             EEec
Confidence            7654

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.75  E-value=2.6e-08  Score=72.38  Aligned_cols=62  Identities=23%  Similarity=0.260  Sum_probs=50.6

Q ss_pred             eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|+|+|.++..+  .......|.|.++...|+|.|+|.|.|..|....+..+.+.
T Consensus         3 l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           3 LPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             EEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            6677777    89999999988654  11223689999999999999999999999998878777664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.74  E-value=6e-08  Score=70.36  Aligned_cols=68  Identities=34%  Similarity=0.527  Sum_probs=55.7

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .|.|.+.+.|.|.+.|++++..+.. .++.+.   ....|.|.++.++|.|.|+|.|.|..|....+..+.|
T Consensus         2 ~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           2 EFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             EEEEECccCCCCEEEEEECCccCCC-CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            6899999999999999999776543 334443   2347999999999999999999999999888776653

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.73  E-value=4.8e-08  Score=72.77  Aligned_cols=61  Identities=15%  Similarity=0.214  Sum_probs=49.3

Q ss_pred             eccCcee----eEEEEeCCeEeeeccc-------------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNV-------------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~-------------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      +.|.+.|    .++|+|+|+++..+..             .....|.|.++...|.|.|+|.|.|.+|...++..|.+
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            4566667    8999999998876521             11347999999999999999999999999988877653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.73  E-value=2.4e-08  Score=73.58  Aligned_cols=61  Identities=18%  Similarity=0.209  Sum_probs=50.7

Q ss_pred             eccCcee----eEEEEeCCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|..+....   ......|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus         7 l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           7 FLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             EEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            7787777    899999998776441   122358999999999999999999999999998888865

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.73  E-value=4.7e-08  Score=74.10  Aligned_cols=61  Identities=30%  Similarity=0.339  Sum_probs=50.8

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+....       ......|.|.++.+.|+|.|+|.|.|..|....+..|.|
T Consensus        15 l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894          15 LDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             EEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence            7777777    999999999886531       122468999999999999999999999999988887764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.73  E-value=1.3e-07  Score=68.05  Aligned_cols=68  Identities=22%  Similarity=0.411  Sum_probs=54.1

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      |..+.|.|.+.|.|.|.+.|++++..+.....+..    ....|.|.++.  +.|.|+|.|.|..|....++.+
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            56789999999999999999999988755443322    23368888874  6899999999999987776654

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.72  E-value=3.4e-08  Score=71.53  Aligned_cols=59  Identities=17%  Similarity=0.152  Sum_probs=48.9

Q ss_pred             eccCcee----eEEEEeCCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV  696 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l  696 (716)
                      |.|.+.|    .+.|+++|..+....   ......|.|.++...|+|.|+|.|.|..|..+.+..|
T Consensus         3 L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           3 IPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             eEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            6788887    899999998876541   1223689999999999999999999999999887766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.72  E-value=2.9e-08  Score=72.34  Aligned_cols=61  Identities=20%  Similarity=0.211  Sum_probs=50.5

Q ss_pred             eccCcee----eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+...   .......|.|.++...|.|.|+|.|.|..|..+.+..|.|
T Consensus         3 L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           3 LECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             EEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            6777777    89999998766543   1123368999999999999999999999999998888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.71  E-value=1.2e-07  Score=69.64  Aligned_cols=69  Identities=26%  Similarity=0.366  Sum_probs=54.5

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEecc--CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce-eeEEEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIIS--KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTV  516 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-~~s~~~~v  516 (716)
                      .|.|.+.|.|.|.+.|++++..+..  ..++..  .. ...|.|.++...|.|.|+|.|.|..|.. +..+.+.|
T Consensus         2 ~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~--~~-~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           2 TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ--LR-SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             EEEEEEeEecCCEEEEEECCEECccCCCCCEEE--cC-CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            6899999999999999999988763  334433  22 2369999999999999999999999975 45555544

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.71  E-value=1.3e-07  Score=72.83  Aligned_cols=76  Identities=26%  Similarity=0.342  Sum_probs=57.6

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeC----CeEeccCCc--EEEEe-------CCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCN----DITIISKDR--FKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~----~~~~~~~~~--~~~~~-------~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      |..+.|.|.+.+.|.|.+.|+++    +..+.....  ..+..       ......|.|.++..+|.|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            56789999999999999999984    333322211  11111       122358999999999999999999999999


Q ss_pred             eeeEEEEEE
Q psy7040         508 DKGTAKVTV  516 (716)
Q Consensus       508 ~~~s~~~~v  516 (716)
                      ...++.+.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            988888776

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.71  E-value=9.8e-08  Score=70.85  Aligned_cols=69  Identities=29%  Similarity=0.396  Sum_probs=56.8

Q ss_pred             EEEEEEec-cCCCeEEEEeCCeEeccCCcE---EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040         445 EFDINVIG-EPIPTKEWLCNDITIISKDRF---KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  513 (716)
Q Consensus       445 ~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~  513 (716)
                      .|.|.+.+ .|.+.+.|++++..+......   .+........|.|.++.+.|.|.|+|.|.|..|....++.
T Consensus         2 ~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           2 VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             EEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            58899999 999999999999888654432   2444455678999999999999999999999998776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.70  E-value=1.7e-07  Score=69.14  Aligned_cols=73  Identities=19%  Similarity=0.394  Sum_probs=57.3

Q ss_pred             CCeEEEEEEEeccCCCeEEEEe-CCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLC-NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      |+.+.|.|.+.+.|.|.+.|++ ++..+....++....   ...|.|..+...|.|.|+|.|.|..|....++.+.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            5678999999999999999997 555554444443322   237899999999999999999999998877776653

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.70  E-value=1.4e-07  Score=71.63  Aligned_cols=78  Identities=28%  Similarity=0.354  Sum_probs=62.8

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  515 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~  515 (716)
                      +....|+.+.|.|.+.+.|.+.+.|++++..+.......  .......|.|.++.++|.|.|+|.|.|..|....++.+.
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            446678999999999999999999999988765433322  222356899999999999999999999999877776654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.69  E-value=1.5e-07  Score=72.49  Aligned_cols=74  Identities=24%  Similarity=0.394  Sum_probs=59.2

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEec--------cCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITII--------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      |+.+.|.|.+.+.|.+.+.|++++....        ...++.+..   ...|.|.++.+.|.|.|.|.|.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            5678999999999999999999876431        223333322   23699999999999999999999999988888


Q ss_pred             EEEEE
Q psy7040         513 KVTVL  517 (716)
Q Consensus       513 ~~~v~  517 (716)
                      .+.|.
T Consensus        78 ~l~V~   82 (90)
T cd05726          78 YLEVT   82 (90)
T ss_pred             EEEEe
Confidence            77776

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.69  E-value=4.3e-08  Score=76.62  Aligned_cols=62  Identities=13%  Similarity=0.284  Sum_probs=52.1

Q ss_pred             eccCcee----eEEEEeCCeEeeeccc------------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNV------------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~------------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|+|+|.++..+..            .....|.|.++...|+|.|+|.|.|.+|..+.++.|.|.
T Consensus        23 l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          23 FVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             EEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence            6677777    8999999999875421            123589999999999999999999999999999999885

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.69  E-value=4.8e-08  Score=72.44  Aligned_cols=61  Identities=15%  Similarity=0.122  Sum_probs=47.6

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-----cceeeEEEEccCCCCCcEEEEEEEEcCCCCceee--EEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s--~~l~v  698 (716)
                      |.|.+.|    .+.|+|+|..+....     ......|.|.++.++|+|.|.|.|.|.+|....+  ..|.|
T Consensus         3 L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           3 LRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             EEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            6787777    799999999876542     1122579999999999999999999999987544  44444

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.68  E-value=7.2e-07  Score=81.19  Aligned_cols=110  Identities=15%  Similarity=0.134  Sum_probs=81.9

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEe-----ccCC
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-----GEPI  455 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~-----~~p~  455 (716)
                      ...+.|.++...+.+.|.|.|.|..|....+   ....+..   +       .....+..|..+.|.|.+.     +.|.
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~---i~L~V~~---~-------~~~~~~~~G~~v~L~C~~~~~~~~~~p~  163 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEEST---IRLTFDS---G-------TINYQFNSGKDSKLHCYGTDGISSTFKD  163 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceEEE---EEEEEec---C-------CccceEecCCCEEEEeeCCCCccccCCC
Confidence            4678999999999999999999976542211   1111111   1       1235677899999999875     3467


Q ss_pred             CeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       456 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      +.+.|++++..+....++.+..  ....|.|.++..+|.|.|+|.|....
T Consensus       164 p~I~WyKng~~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        164 YTLTWYKNGNIVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             ceEEEEECCEECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            8999999999987666655443  34589999999999999999998754

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.68  E-value=3e-07  Score=73.00  Aligned_cols=84  Identities=27%  Similarity=0.427  Sum_probs=60.9

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc----CCcEEE-EeCCCeEEEEEC--CCCCCCceeEEEEEEcCC
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS----KDRFKI-VNDDKSTKLKVF--DSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~----~~~~~~-~~~~~~~~l~i~--~l~~~~~~~y~~~a~n~~  505 (716)
                      +.++.+..|+.+.|.|.+.+.|.+.+.|++++..+..    .....+ ...+....+.+.  .+...|.|.|+|.|.|..
T Consensus         8 p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~   87 (100)
T cd07693           8 PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSL   87 (100)
T ss_pred             CceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccc
Confidence            4568899999999999999999999999999988764    122222 222322333332  346899999999999999


Q ss_pred             Cc-eeeEEEEEE
Q psy7040         506 GT-DKGTAKVTV  516 (716)
Q Consensus       506 g~-~~~s~~~~v  516 (716)
                      |. .+..+.+.+
T Consensus        88 G~~~s~~~~l~v   99 (100)
T cd07693          88 GEAVSRNASLEV   99 (100)
T ss_pred             cceecceEEEEe
Confidence            98 455555544

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.68  E-value=3.6e-07  Score=70.43  Aligned_cols=81  Identities=26%  Similarity=0.520  Sum_probs=61.4

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEe-CCeEeccCCcEEEEe-CCCeEEEEECCCCCCCceeEEEEEEcCCCc-eee
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLC-NDITIISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKG  510 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~-~~~~~~~~~~~~~~~-~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~-~~~  510 (716)
                      ....+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.+.. ......|+|.++.++|.|.|+|.|.|..|. ...
T Consensus         8 ~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~   86 (92)
T cd04977           8 SQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEA   86 (92)
T ss_pred             CcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCccee
Confidence            3477899999999999999975 999997 555554444444433 335578999999999999999999998654 455


Q ss_pred             EEEEE
Q psy7040         511 TAKVT  515 (716)
Q Consensus       511 s~~~~  515 (716)
                      ++.+.
T Consensus        87 sv~l~   91 (92)
T cd04977          87 TVNLK   91 (92)
T ss_pred             EEEEE
Confidence            55443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.68  E-value=1.3e-07  Score=69.30  Aligned_cols=69  Identities=26%  Similarity=0.359  Sum_probs=56.3

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .|.|.+.|.|.|.+.|++++..+... +..  .......|.|.++...|.|.|+|.|.|..|....+..+.|
T Consensus         2 ~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           2 LLECIAEGLPTPEISWIKIGGELPAD-RTK--FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             EEEEEeeEecCCeEEEEECCeECCCC-cee--EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            68999999999999999998776432 222  2234558999999999999999999999998888777765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.67  E-value=7.2e-08  Score=71.46  Aligned_cols=61  Identities=20%  Similarity=0.130  Sum_probs=50.6

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-----cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|..+....     ......|.|.++.+.|+|.|+|.|.|..|.....+.|.|
T Consensus         6 l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           6 LDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             EEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6777777    799999998876531     112367999999999999999999999999988888876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>KOG3515|consensus

Probab=98.67  E-value=1e-05  Score=84.11  Aligned_cols=308  Identities=13%  Similarity=0.007  Sum_probs=157.2

Q ss_pred             EEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCC-CeEEEEe
Q psy7040         384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI-PTKEWLC  462 (716)
Q Consensus       384 ~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~-~~~~W~~  462 (716)
                      ..+..+.......|.|.|-+.......+..    ....+..+|.+.......+...+.+.......+.+.|. +.+.|..
T Consensus       363 ~~~q~~~~~~~g~v~c~a~~~~~~~~sss~----~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~  438 (741)
T KOG3515|consen  363 HYAQPSSQQDGGQVTCPADNLELAHSSSSS----FLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTF  438 (741)
T ss_pred             eeecccchhcCceEEccccccccccccccc----eeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhhee
Confidence            344445555667888888776633222211    11122224444433333444445554444444444444 4688999


Q ss_pred             CCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE-EEEEEE-eCCC--CCCCCceeeEE
Q psy7040         463 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-GCSLKW-NPPE--DDGGAPIEYYM  538 (716)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-~v~l~W-~~p~--~~~~~~i~~y~  538 (716)
                      .+..+.......+............++...+.|.|.|.|.|..|.........+. +..+.= +.+.  ..++.....+.
T Consensus       439 ~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~  518 (741)
T KOG3515|consen  439 RLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECM  518 (741)
T ss_pred             cceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceee
Confidence            9888876666554444444444456688889999999999999988766554433 000000 0000  11111111222


Q ss_pred             EEEEecCCCceeeeEEEccceee-------eeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCC--
Q psy7040         539 VEKMETDTGKVLIKWIRTNDKRV-------TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS--  609 (716)
Q Consensus       539 v~~~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~--  609 (716)
                      ..-.+...  --..|.+.+....       ..........+.+.+-.....|.+.|.+.+..-.+.....+.+..++.  
T Consensus       519 q~~~~~~~--~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~  596 (741)
T KOG3515|consen  519 QDEQPQDQ--QMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVT  596 (741)
T ss_pred             ccccccch--hhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEeccccccc
Confidence            21111111  0134444333221       111112235677777777788899999888222223333333332222  


Q ss_pred             --CCccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeec----------ccceeeEEEEccCCC
Q psy7040         610 --APEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTID----------NVDYFTKITIRPLQR  673 (716)
Q Consensus       610 --~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~----------~~~~~~~~~i~~l~~  673 (716)
                        .|. +..-....+.            ...+|.+.+    .+.|.++......+          .........|.+...
T Consensus       597 ~~tp~-~~~~~~g~v~------------as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  663 (741)
T KOG3515|consen  597 VRTPN-MYTAQEGCVN------------ASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHID  663 (741)
T ss_pred             ccCCc-eeeeccCccc------------ccccceecccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcc
Confidence              111 1111111111            125664444    77888876543222          111123445556666


Q ss_pred             CCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCeEEEE
Q psy7040         674 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIWM  713 (716)
Q Consensus       674 ~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~p~~~~~  713 (716)
                      .+.|...|.+.|..|.+..+..+.   .+..|.+|+.+.|
T Consensus       664 ~~~y~~~c~t~n~lg~~~v~~~~~---~~t~~~~~~n~~~  700 (741)
T KOG3515|consen  664 GSDYENGCTTQNLLGSDHVSGAIH---SGTASVGPINLTY  700 (741)
T ss_pred             hhhhcceeeecccCCCccccceec---CCcCCCCccceEe
Confidence            677779999999999987766544   4556666666654

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.67  E-value=5e-08  Score=74.49  Aligned_cols=62  Identities=18%  Similarity=0.022  Sum_probs=50.6

Q ss_pred             eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|++++..+...  .......|.|.++.++|.|.|+|.|.|..|....++.|.|+
T Consensus        21 l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          21 LECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ   88 (88)
T ss_pred             EEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence            7777777    89999998766443  11122579999999999999999999999999999988874

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.66  E-value=7.5e-08  Score=75.08  Aligned_cols=62  Identities=18%  Similarity=0.355  Sum_probs=50.7

Q ss_pred             eccCcee-----eEEEEeCCeEeeeccc-----------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDNV-----------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~~-----------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|     .+.|+|+|..+.....           .....|.|..+.++|+|.|+|.|.|..|..+.++.|.|.
T Consensus        23 L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          23 LVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN  100 (101)
T ss_pred             EEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence            5555555     7999999998875411           123779999999999999999999999999999998886

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.66  E-value=7.2e-08  Score=71.25  Aligned_cols=62  Identities=19%  Similarity=0.086  Sum_probs=51.1

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-----cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    ++.|+++|+++....     ......+.|.++.+.|+|.|+|.|.|..|....++.|.|.
T Consensus         6 l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868           6 LICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             EEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            6777777    999999999885431     1112478999999999999999999999999999998873

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.65  E-value=3.6e-07  Score=70.71  Aligned_cols=68  Identities=25%  Similarity=0.374  Sum_probs=54.4

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCC-CCCceeEEEEEEcCCCcee
Q psy7040         440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~  509 (716)
                      .|..+.|.|.+.|.|.|.+.|++++..+.......+...+  ..|.|.++. +.|.|.|+|.|.|..|...
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            4688999999999999999999999988644333333222  368888874 6999999999999999764

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.64  E-value=6.4e-08  Score=70.21  Aligned_cols=61  Identities=18%  Similarity=0.163  Sum_probs=49.0

Q ss_pred             eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+...  .......|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus         3 l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           3 FQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             EEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            6777777    89999997765433  1112368999999999999999999999999988887764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.62  E-value=9.7e-08  Score=70.14  Aligned_cols=61  Identities=18%  Similarity=0.060  Sum_probs=49.9

Q ss_pred             eccCcee----eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+...   .......|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus         6 L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           6 IECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             EEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            6677666    89999999887544   1112257999999999999999999999999999888875

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.62  E-value=1.8e-07  Score=71.85  Aligned_cols=76  Identities=28%  Similarity=0.379  Sum_probs=56.8

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCC----eEeccC--CcEEEEe-------CCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCND----ITIISK--DRFKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~----~~~~~~--~~~~~~~-------~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      |..+.|.|.+.+.|.|.+.|++++    ..+...  ....+..       .+....|.|.++.++|.|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            467899999999999999999964    222111  1111111       123457999999999999999999999999


Q ss_pred             eeeEEEEEE
Q psy7040         508 DKGTAKVTV  516 (716)
Q Consensus       508 ~~~s~~~~v  516 (716)
                      ...++.+.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            988888776

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.62  E-value=4.9e-07  Score=68.78  Aligned_cols=75  Identities=16%  Similarity=0.278  Sum_probs=58.5

Q ss_pred             eEEEEEEEeccCCC--eEEEEeCCeEeccCC---cEE-EEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         443 NFEFDINVIGEPIP--TKEWLCNDITIISKD---RFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       443 ~~~~~~~v~~~p~~--~~~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .+.|.|.+.+.|.+  .+.|++++..+....   .+. .........|.|.+++..|.|.|+|.|.|..|....++.+.|
T Consensus         2 ~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   81 (85)
T cd04970           2 SITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIV   81 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEE
Confidence            46899999999987  568999998875322   222 222234568999999999999999999999998888877776


Q ss_pred             E
Q psy7040         517 L  517 (716)
Q Consensus       517 ~  517 (716)
                      .
T Consensus        82 ~   82 (85)
T cd04970          82 R   82 (85)
T ss_pred             E
Confidence            4

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.62  E-value=8.6e-08  Score=70.92  Aligned_cols=61  Identities=15%  Similarity=0.033  Sum_probs=48.6

Q ss_pred             eccCcee----eEEEEeCCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .++|+++|......       .......|.|.++.++|+|.|+|.|.|..|....++.|.|
T Consensus         3 l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           3 LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             eEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            6788888    79999988642211       1112257999999999999999999999999998888887

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.61  E-value=1.7e-07  Score=69.57  Aligned_cols=66  Identities=20%  Similarity=0.247  Sum_probs=49.9

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCC----CCceeEEEEEEcCCCceee
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR----GDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~----~~~~~y~~~a~n~~g~~~~  510 (716)
                      .|.|.+.|.|.|.+.|++++..+.......+........|.|..+..    +|.|.|+|.|.|..|....
T Consensus         2 ~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           2 VIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             EEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            68899999999999999999887543222233333345788888754    6899999999999997543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.61  E-value=1.8e-07  Score=69.47  Aligned_cols=63  Identities=22%  Similarity=0.232  Sum_probs=52.3

Q ss_pred             eccCcee----eEEEEeCCeEeeecc------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |.|.+.|    .+.|++++..+....      ......|.|.++...|.|.|+|.|.|..|....++.|.|..
T Consensus         3 L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   75 (76)
T cd05736           3 LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED   75 (76)
T ss_pred             eEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence            6677777    899999998876441      12225799999999999999999999999999999998863

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.61  E-value=1.3e-07  Score=73.08  Aligned_cols=61  Identities=21%  Similarity=0.381  Sum_probs=49.0

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+....       .+....|.|.++...|+|.|+|.|.|..|.......|.|
T Consensus        21 L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   92 (92)
T cd05737          21 LTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence            5566555    899999998876531       122357999999999999999999999999988887764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.61  E-value=4e-07  Score=69.70  Aligned_cols=73  Identities=25%  Similarity=0.444  Sum_probs=60.4

Q ss_pred             ccEEEecCCeEEEEEEE-eccCCCeEEEEeCCeEeccC-CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040         434 SDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~  509 (716)
                      ..+.+..|+.+.|.|.+ .+.|.+.+.|++++..+... .++.+..   ...|.|.++.+.|.|.|+|.|.|..|...
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence            45778899999999998 79999999999999887653 3343332   34799999999999999999999999754

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.60  E-value=4.5e-07  Score=65.24  Aligned_cols=64  Identities=22%  Similarity=0.242  Sum_probs=50.6

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      .|.|.+.|.|.|.+.|++++..+..... .....  ..+|.|.++..+|.|.|+|.|.|........
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~   65 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVD--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKN   65 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeC--CCEEEECcCCHHHCEEEEEEEEccccceEee
Confidence            6899999999999999999988765422 22222  3479999999999999999999986554443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.60  E-value=2.4e-07  Score=73.91  Aligned_cols=66  Identities=26%  Similarity=0.278  Sum_probs=54.1

Q ss_pred             eccCcee----eEEEEeCCeEeeeccc-----------ceeeEEEEccCC-CCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNV-----------DYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~-----------~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      |.|.+.|    .+.|+++|..+.....           .....|.|.++. ..|.|.|+|.|.|..|....+..|.+..+
T Consensus        28 L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~  107 (109)
T cd05773          28 LVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSR  107 (109)
T ss_pred             EEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCC
Confidence            7777777    8999999988753211           112579999997 68999999999999999999999999987


Q ss_pred             CC
Q psy7040         702 PS  703 (716)
Q Consensus       702 p~  703 (716)
                      |.
T Consensus       108 p~  109 (109)
T cd05773         108 PD  109 (109)
T ss_pred             CC
Confidence            74

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.59  E-value=1.1e-07  Score=69.77  Aligned_cols=61  Identities=21%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             eccCcee----eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+...   .......|.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus         3 l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           3 LECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             EEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            5677777    89999998766443   1223368999999999999999999999999988888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.58  E-value=2.8e-07  Score=70.98  Aligned_cols=80  Identities=23%  Similarity=0.203  Sum_probs=62.6

Q ss_pred             cEEEecCCeEEEEEEEec-----cCCCeEEEEeCCeEeccC--CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         435 DIKVRAGSNFEFDINVIG-----EPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~-----~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|++++..+...  ...++...  ...|.|.++.++|+|.|.|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            456778999999999998     688899999998654321  22233222  347999999999999999999999998


Q ss_pred             eeeEEEEEE
Q psy7040         508 DKGTAKVTV  516 (716)
Q Consensus       508 ~~~s~~~~v  516 (716)
                      ...++.+.|
T Consensus        86 ~~~~~~L~v   94 (94)
T cd05756          86 MKVSISLTV   94 (94)
T ss_pred             EEEEEEEEC
Confidence            888776653

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.58  E-value=5.9e-07  Score=70.06  Aligned_cols=78  Identities=23%  Similarity=0.370  Sum_probs=58.6

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCc--EEEEeCCCeEEEEECCC-----CCCCceeEEEEEEcC-C
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDS-----KRGDSGIYTLAVKNS-W  505 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~l-----~~~~~~~y~~~a~n~-~  505 (716)
                      .+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.....  +.+...   ..+.|.++     .+.|.|.|+|.|.|. .
T Consensus         7 ~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~   83 (95)
T cd05722           7 SDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPN---GSLLITSVVHSKHNKPDEGFYQCVAQNDSL   83 (95)
T ss_pred             CCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccC---CeEEEeeeeccCCCCCcCEEEEEEEECCcc
Confidence            456778899999999999999999999999988865433  222222   24555555     688999999999999 8


Q ss_pred             Cce-eeEEEE
Q psy7040         506 GTD-KGTAKV  514 (716)
Q Consensus       506 g~~-~~s~~~  514 (716)
                      |.. +..+.+
T Consensus        84 G~~~s~~~~l   93 (95)
T cd05722          84 GSIVSRTARL   93 (95)
T ss_pred             CcEEEeeeEE
Confidence            876 334444

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.57  E-value=6e-07  Score=66.67  Aligned_cols=70  Identities=17%  Similarity=0.311  Sum_probs=55.8

Q ss_pred             cccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      +.++.+..|+.+.|.|.+.|.|.| .+.|++++..+...      .......|.|.++.  +.|.|.|.|.|..|....
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~------~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP------PAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC------CCCCCCEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence            446789999999999999999999 79999999887531      11223478888874  679999999999996543

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.57  E-value=4e-07  Score=68.77  Aligned_cols=75  Identities=23%  Similarity=0.444  Sum_probs=55.3

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeE---e-ccCCcE--EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDIT---I-ISKDRF--KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~---~-~~~~~~--~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      |+.+.|.|.+.+.|.|.+.|+++...   . ......  .+. ......|.|.++.+.|.|.|.|.|.|..|.....+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVV-VTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL   79 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEE-EccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence            56789999999999999999997421   1 011110  111 1124589999999999999999999999998887776


Q ss_pred             EE
Q psy7040         515 TV  516 (716)
Q Consensus       515 ~v  516 (716)
                      .|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            53

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.57  E-value=3.4e-07  Score=67.69  Aligned_cols=66  Identities=17%  Similarity=0.248  Sum_probs=48.4

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCC----CceeEEEEEEcCCCceee
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG----DSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~----~~~~y~~~a~n~~g~~~~  510 (716)
                      .|.|.+.|.|.|.+.|++++..+.......+........|.|..+...    |.|.|+|.|.|..|....
T Consensus         2 ~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           2 VIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             EEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            689999999999999999998764332222233233346777776643    689999999999997654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.57  E-value=2.4e-07  Score=71.40  Aligned_cols=61  Identities=15%  Similarity=0.164  Sum_probs=49.4

Q ss_pred             eccCcee----eEEEEeCCeEeeecc------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|..+....      ......|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus        20 l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v   90 (90)
T cd04972          20 IRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV   90 (90)
T ss_pred             EEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence            5666666    999999998775431      122368999999999999999999999999998888764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.57  E-value=1.8e-07  Score=69.55  Aligned_cols=61  Identities=18%  Similarity=0.012  Sum_probs=51.1

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-----cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|..+....     ......|.|.++...|.|.|+|.|.|..|...+++.|.|
T Consensus         6 l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           6 LDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             EEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            6777777    799999998876542     222378999999999999999999999999999888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.57  E-value=1.7e-07  Score=71.50  Aligned_cols=61  Identities=18%  Similarity=0.199  Sum_probs=49.7

Q ss_pred             eccCcee----eEEEEeCCeEeeeccc-------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNV-------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~-------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|..+.....       .....|.|.++.+.|+|.|+|.|.|..|....++.|.|
T Consensus        14 L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857          14 FRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             EEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence            6676666    8999999998865421       11246899999999999999999999999998888865

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.56  E-value=6.4e-07  Score=66.79  Aligned_cols=75  Identities=20%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             eEEEEEEEec--cCCCeEEEEeCCeEecc---CCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         443 NFEFDINVIG--EPIPTKEWLCNDITIIS---KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       443 ~~~~~~~v~~--~p~~~~~W~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .+.|.|.+..  .+.+.+.|++++..+..   ..++..... .....|.|.++...|.|+|+|.|.|..+..+.++.+.|
T Consensus         2 ~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V   81 (85)
T cd05853           2 SIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIV   81 (85)
T ss_pred             cEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEE
Confidence            4688999976  45778999999999852   223433221 23458999999999999999999999999999988877


Q ss_pred             E
Q psy7040         517 L  517 (716)
Q Consensus       517 ~  517 (716)
                      .
T Consensus        82 ~   82 (85)
T cd05853          82 R   82 (85)
T ss_pred             e
Confidence            5

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.56  E-value=2.5e-07  Score=72.28  Aligned_cols=63  Identities=17%  Similarity=0.172  Sum_probs=51.3

Q ss_pred             eccCcee----eEEEEeCCeEeeec-----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID-----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |.|.+.|    .+.|+++|..+...     .......|.|.++...|.|.|+|.|.|..|....+..|.|..
T Consensus        23 L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~   94 (95)
T cd05730          23 LACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFA   94 (95)
T ss_pred             EEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence            5566666    89999999877553     112235799999999999999999999999999999998865

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.53  E-value=3.1e-07  Score=67.54  Aligned_cols=61  Identities=23%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             eccCcee----eEEEEeCCeEeeec-----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID-----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+...     .......|.|.++...|+|.|+|.|.|..|.. +.++.|.|
T Consensus         3 l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           3 MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             EEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            6787777    79999999877632     11223579999999999999999999999985 66777766

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.52  E-value=6.3e-07  Score=66.24  Aligned_cols=65  Identities=23%  Similarity=0.293  Sum_probs=48.6

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEec--cCCcEEEEeCCCeEEEEECCCC---C-CCceeEEEEEEcCCCceeeE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITII--SKDRFKIVNDDKSTKLKVFDSK---R-GDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~l~---~-~~~~~y~~~a~n~~g~~~~s  511 (716)
                      .|.|.+.|.|.|.+.|++++..+.  ...++.+...  ...|.|..+.   + ++.|.|+|.|.|..|.....
T Consensus         2 ~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~--~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           2 IIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRR--SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             EEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCC--CceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            689999999999999999998653  3344444322  3478887653   2 46899999999999976443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.51  E-value=2.3e-06  Score=66.30  Aligned_cols=68  Identities=18%  Similarity=0.193  Sum_probs=52.4

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCC-CCCceeEEEEEEcCCCceee
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~~  510 (716)
                      |+.+.|.|.+.+.|.+.+.|++++..+.......+...  ...|.|.++. ..|.|.|+|.|.|..|....
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--AGNLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--CCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            45799999999999999999999988864332222222  2368887765 58999999999999997643

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.50  E-value=2.3e-07  Score=69.23  Aligned_cols=61  Identities=13%  Similarity=0.177  Sum_probs=47.3

Q ss_pred             eccCcee---eEEEEeCCeEeeecc--cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL---ESQYLMNDKRVTIDN--VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~~--~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.+   .+.|+|+|.++..+.  .-....|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus        14 l~C~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973          14 LRCRLRDDVQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             EEEEecCCCceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            4555554   789999998876541  111257999999999999999999999999887776654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.50  E-value=3.5e-07  Score=70.68  Aligned_cols=61  Identities=20%  Similarity=0.360  Sum_probs=46.1

Q ss_pred             eccCcee-----eEEEEe-CCeEeeecc--------cceeeEEEEccCCCCCcEEEEEEEEcCC-CCceeeEEEEE
Q psy7040         638 SLMPISL-----ESQYLM-NDKRVTIDN--------VDYFTKITIRPLQRSDTAQYTVTATNSQ-GKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~-~~~~~~~~~--------~~~~~~~~i~~l~~~~~y~y~~~a~n~~-G~~~~s~~l~v  698 (716)
                      |.|.+.|     .+.|++ +++.+....        ......|.|.++.+.|+|.|+|.|.|.+ |....++.|.|
T Consensus        20 l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          20 FLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            4555544     789997 776554421        1123689999999999999999999997 88888888776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.50  E-value=1.4e-06  Score=67.03  Aligned_cols=66  Identities=23%  Similarity=0.446  Sum_probs=52.7

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeCCCeEEEEECCCC-CCCceeEEEEEEcCCCceee
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~~  510 (716)
                      +..+.|.|.+.|.|.|.+.|++++..+.. ..++.+.    ...|.|.++. ..|.|.|.|.|.|..|....
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV----GGNLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE----CCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            34799999999999999999999988753 3344332    2378998885 68999999999999997643

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG0613|consensus

Probab=98.48  E-value=4e-06  Score=90.76  Aligned_cols=458  Identities=18%  Similarity=0.212  Sum_probs=247.5

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .|+.+-....+....+...|..+..+++..+..|.|+.+..+...|..........-.+..+.    |.++|+++-..|+
T Consensus       141 ~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~~a~----~e~~v~~v~s~gq  216 (1205)
T KOG0613|consen  141 PPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDTDAH----YESRVRAVVSAGQ  216 (1205)
T ss_pred             CCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCcceeccc----cceeEEEEEecCC
Confidence            344444555677788999999999889999999999999988888877665443333444444    4445554444443


Q ss_pred             CCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEE
Q psy7040         136 SEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEV  215 (716)
Q Consensus       136 ~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  215 (716)
                      ..+.........                                                                    
T Consensus       217 p~~~~~~~~~g~--------------------------------------------------------------------  228 (1205)
T KOG0613|consen  217 PEPLERWEILGE--------------------------------------------------------------------  228 (1205)
T ss_pred             Cccchhhhhccc--------------------------------------------------------------------
Confidence            332211110000                                                                    


Q ss_pred             EEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEe-CCCCCeEEccccCcccceEEEcCCCCCCeE
Q psy7040         216 EVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMD-EATGRWTPAGETEGPVTGLEVEGLIPNHKY  294 (716)
Q Consensus       216 ~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~-~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y  294 (716)
                         +..+...+.. -.........+.+.|..+..+....+.+|.++... .+...|...........+.+...-..+-.+
T Consensus       229 ---~i~~~~~~~~-s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~  304 (1205)
T KOG0613|consen  229 ---LIAPGSAPSM-SVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQD  304 (1205)
T ss_pred             ---ccCCCCcccc-ccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeecccCCccc
Confidence               0012222222 11122233345566665444333334444444333 333344443333334455555555666677


Q ss_pred             EEEEEEEcCCCCCCCCcccceEEec-CCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEE
Q psy7040         295 KFRVRAVNKQGKSEPLTTTASIEAK-NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK  373 (716)
Q Consensus       295 ~~~v~a~n~~g~~~~~~~~~~~~~~-~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~  373 (716)
                      .+++...-..|.+.+........+. .+...+..+.++.+.....+.+++.|.-+...-.....+|...-....+..|..
T Consensus       305 ~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  384 (1205)
T KOG0613|consen  305 RFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALP  384 (1205)
T ss_pred             ceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccc
Confidence            7777776666655444433222221 222333456667777777888999998754433333566666655555555655


Q ss_pred             EeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEecc
Q psy7040         374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE  453 (716)
Q Consensus       374 ~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~  453 (716)
                      ..........+.+.++.++..|.++|.|.|..|.........+........++.+.........+...+.+...|.+...
T Consensus       385 ~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~  464 (1205)
T KOG0613|consen  385 CPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSST  464 (1205)
T ss_pred             cccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCc
Confidence            55556677888999999999999999999999987666655544443333333332221122222233556667777666


Q ss_pred             CCC--eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE-----EEEEEEeCC
Q psy7040         454 PIP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-----GCSLKWNPP  526 (716)
Q Consensus       454 p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-----~v~l~W~~p  526 (716)
                      +.+  .++|.+++...  .........+...++.+.-..+.+.+.|........|....+......     .-...|..+
T Consensus       465 ~~~~~~~tt~~~~~~~--s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~~~s~a~~~~~~~~  542 (1205)
T KOG0613|consen  465 SMPMTTVTTIKDGLPL--SDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLPAAKSSAPKPIHTQE  542 (1205)
T ss_pred             cccceeEeeccCCccc--ccccccccccchhhheeeccCCCccchhhhhhhccCCCCCCcccccccccccCCcccccccc
Confidence            644  45566655443  222222222334456666566666677765555444433222221111     111223332


Q ss_pred             CCCCCCceeeEEEEEEecCCC--------ceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCcc
Q psy7040         527 EDDGGAPIEYYMVEKMETDTG--------KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV  598 (716)
Q Consensus       527 ~~~~~~~i~~y~v~~~~~~~~--------~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~  598 (716)
                      ... +.+...|...+.+....        .....|.......        .++..+.++.++..|.+++.+.+..|++.+
T Consensus       543 ~~~-g~p~l~~~~~~~E~~~vs~~~~~a~~qlg~~~~~~~r~--------gtt~t~~~~~p~~~~~~t~~~k~~~gE~~p  613 (1205)
T KOG0613|consen  543 NQP-GTPTLEWEPKPAEASKVSLHYASATRQLGVWRVPESRP--------GTTETIGSILPGHEYHVTIKAKNELGESRP  613 (1205)
T ss_pred             cCC-CCcccccCCCcccccccchhhhhhhhhccCCcccccCC--------CcccccccccccccceeehhhhhcccccCC
Confidence            221 22233333222222100        0001111111111        288889999999999999999999999988


Q ss_pred             ce
Q psy7040         599 FI  600 (716)
Q Consensus       599 s~  600 (716)
                      +.
T Consensus       614 s~  615 (1205)
T KOG0613|consen  614 SS  615 (1205)
T ss_pred             CC
Confidence            84

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.48  E-value=4.1e-07  Score=69.78  Aligned_cols=62  Identities=18%  Similarity=0.050  Sum_probs=50.0

Q ss_pred             eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|++++..+...  .......|.|.++..+|+|.|+|.|.|..|....+..|.|.
T Consensus        21 l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (88)
T cd04968          21 LECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ   88 (88)
T ss_pred             EEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence            6666666    89999987765443  11234789999999999999999999999999999888773

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.46  E-value=3.6e-07  Score=69.39  Aligned_cols=61  Identities=21%  Similarity=0.154  Sum_probs=49.1

Q ss_pred             eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|..+...  .......|.|.++...|.|.|+|.|.|..|....++.|+|
T Consensus        19 l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728          19 WECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV   85 (85)
T ss_pred             EEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence            5555555    89999999987653  1223368999999999999999999999999988888764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.45  E-value=4.9e-07  Score=67.06  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=45.5

Q ss_pred             eccCcee-----eEEEEeCCeEeeeccc---------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEE
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDNV---------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE  695 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~~---------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~  695 (716)
                      |.|.+.|     .+.|+++|+++.....         .....|.|.++...|.|.|+|.|.|..|....+++
T Consensus         3 l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           3 LKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             EEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            4455544     7899999988765421         12368999999999999999999999999877664

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.45  E-value=9.9e-07  Score=67.99  Aligned_cols=54  Identities=22%  Similarity=0.471  Sum_probs=44.0

Q ss_pred             eEEEEeCCeEeeecc-------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         645 ESQYLMNDKRVTIDN-------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~-------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      .+.|++++..+..+.       ......|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus        32 ~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          32 EVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             eEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence            789999988765431       112247999999999999999999999999988887764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.45  E-value=2.9e-06  Score=65.66  Aligned_cols=82  Identities=16%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--------EeccCCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--------TIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--------~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +.++.+.+|+.+.|.|.+.+.|.+.+.|++.+.        ......++.+... .....|.|.++.+.|.|.|.|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            457889999999999999999999999986432        1223445554333 3557899999999999999999998


Q ss_pred             CCCceeeEEEEE
Q psy7040         504 SWGTDKGTAKVT  515 (716)
Q Consensus       504 ~~g~~~~s~~~~  515 (716)
                      ..+. ..++.+.
T Consensus        84 ~~~~-~~~~~l~   94 (95)
T cd07701          84 MPVK-TSKAYLT   94 (95)
T ss_pred             ecCc-cEEEEEE
Confidence            5443 4444443

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.44  E-value=1.4e-06  Score=66.05  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=57.7

Q ss_pred             CCeEEEEEEEecc--CCCeEEEEeCCeEeccCCc----EE-EEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040         441 GSNFEFDINVIGE--PIPTKEWLCNDITIISKDR----FK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  513 (716)
Q Consensus       441 g~~~~~~~~v~~~--p~~~~~W~~~~~~~~~~~~----~~-~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~  513 (716)
                      |+.+.|.|.+.+.  |.+.+.|.+++........    .. .........|.|.++.+.|.|.|+|.|.|..|..+.+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            5678999999999  8889999987765432111    00 011123568999999999999999999999999988887


Q ss_pred             EEE
Q psy7040         514 VTV  516 (716)
Q Consensus       514 ~~v  516 (716)
                      +.+
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.44  E-value=1.9e-06  Score=63.87  Aligned_cols=69  Identities=26%  Similarity=0.385  Sum_probs=54.2

Q ss_pred             EEEEEEe-ccCCCeEEEEeCCeEeccC----CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040         445 EFDINVI-GEPIPTKEWLCNDITIISK----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  513 (716)
Q Consensus       445 ~~~~~v~-~~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~  513 (716)
                      .|.|.+. +.|.+.+.|++++..+...    .++.+........|.|.++...|.|.|+|.|.|..|....++.
T Consensus         2 ~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           2 VLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             EEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            5789876 4677899999999887532    2234444455678999999999999999999999998777654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>KOG4802|consensus

Probab=98.43  E-value=6.7e-06  Score=76.82  Aligned_cols=180  Identities=19%  Similarity=0.274  Sum_probs=113.6

Q ss_pred             CCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEE------------EEeCCCCCeEEccccCcccceEEEcCCCC
Q psy7040         223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVD------------KMDEATGRWTPAGETEGPVTGLEVEGLIP  290 (716)
Q Consensus       223 p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~------------~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  290 (716)
                      +.+|.+.+........++.+.|..-.     .+.-|.+.            -.......|..+... .....+...++.|
T Consensus       145 ~l~Pr~k~~y~r~~~g~~av~w~~~~-----~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t-~~e~~~~~t~~rP  218 (516)
T KOG4802|consen  145 QLPPRPKILYFRRSRGSHAVDWKIES-----SLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKT-MEENTYIFTDMRP  218 (516)
T ss_pred             CCCCcchhhhhhhccCceeeeeeecc-----ccceeeeehhhhhhhcccccccccccccceeeeec-CCCceeeeeecCc
Confidence            34444434444556667888888411     12212111            122234466666554 2345888899999


Q ss_pred             CCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCC---eEEEEecCCCCCCCccceEEEEEEeecC
Q psy7040         291 NHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTD---FVELAWTPPEQNGGSPIVGYIIEKKEKY  367 (716)
Q Consensus       291 ~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~---~i~l~W~~p~~~~~~~i~~y~v~~~~~~  367 (716)
                      |.-|.|+|.|+|..|.-..+.++..+.......+|.+|.++.+..+..+   ...|-|.|+..+  -++..|+|.|.-.-
T Consensus       219 gRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sd--lPv~~Yki~Ws~~v  296 (516)
T KOG4802|consen  219 GRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSD--LPVEKYKITWSLYV  296 (516)
T ss_pred             ceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCC--CcceeeEEEeehhh
Confidence            9999999999999887666666655655555677888999887765332   256778875543  37999999996432


Q ss_pred             -C-CceE-EEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCC
Q psy7040         368 -S-PIWE-KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  410 (716)
Q Consensus       368 -~-~~~~-~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~  410 (716)
                       + .... ...........+.|.+|.|+..|.+.|.|....|.+..
T Consensus       297 ~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL  342 (516)
T KOG4802|consen  297 NSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL  342 (516)
T ss_pred             hhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence             1 0000 00001112223449999999999999999998887643

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.42  E-value=5.1e-07  Score=68.43  Aligned_cols=61  Identities=20%  Similarity=0.224  Sum_probs=47.9

Q ss_pred             eccCcee----eEEEEeCCeEeeec----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+...    .......|.|.++.++|+|.|+|.|.|..|....++.|.|
T Consensus        14 L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856          14 LKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             EEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            5555554    78999999877543    1122368999999999999999999999999888877764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.42  E-value=4.1e-06  Score=63.97  Aligned_cols=80  Identities=30%  Similarity=0.351  Sum_probs=63.7

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEE-EeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      +.+..|..+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++.++|.|.|.|.+.|..|....+..+
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            3466789999999999999999999999988764433322 223345679999999999999999999999987776665


Q ss_pred             E
Q psy7040         515 T  515 (716)
Q Consensus       515 ~  515 (716)
                      .
T Consensus        84 ~   84 (85)
T cd05729          84 D   84 (85)
T ss_pred             e
Confidence            4

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.41  E-value=6.9e-07  Score=66.26  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=45.1

Q ss_pred             eccCcee-----eEEEEeCCeEeeecc----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEE
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDN----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE  695 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~  695 (716)
                      |.|.+.+     .+.|+++|+.+....          ......|.|.++...|+|.|+|.|.|..|....++.
T Consensus         3 L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           3 LRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             EEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            5565543     789999998875321          123367999999999999999999999998877664

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.41  E-value=1.9e-06  Score=64.46  Aligned_cols=67  Identities=22%  Similarity=0.298  Sum_probs=49.8

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEec--------cCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce-eeEEEE
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITII--------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKV  514 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-~~s~~~  514 (716)
                      .|.|.+.|.|.|.+.|++++....        ...++.+.   ...+|.|.++.+.|.|.|.|.|.|..|.. +.++.+
T Consensus         2 ~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           2 TLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             EeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            689999999999999999753211        12233332   23479999999999999999999999976 344443

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.41  E-value=7.3e-07  Score=64.15  Aligned_cols=57  Identities=14%  Similarity=0.112  Sum_probs=44.8

Q ss_pred             eccCcee----eEEEEeCCeEeeecc--cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN--VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV  696 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~--~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l  696 (716)
                      |.|.+.|    .+.|++++..+....  ......|.|.++.  +.|.|+|.|.|..|....++.|
T Consensus         6 L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           6 LTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             EEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            7788888    999999998875541  1122468898875  7899999999999998887765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.41  E-value=6.3e-07  Score=69.39  Aligned_cols=61  Identities=23%  Similarity=0.306  Sum_probs=51.4

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+..+      .......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        20 l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   20 LECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             EEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence            5555555    89999999998875      2235589999999999999999999999999998888876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.40  E-value=1.1e-06  Score=67.14  Aligned_cols=61  Identities=11%  Similarity=0.175  Sum_probs=44.4

Q ss_pred             eccCcee---eEEEEe-CCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEE
Q psy7040         638 SLMPISL---ESQYLM-NDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~---~~~W~~-~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v  698 (716)
                      |.|.+.|   .+.|++ ++..+..+      ..+....|.|.++...|+|.|+|.|.|..|.. ..+..|.+
T Consensus        20 l~C~~~G~P~~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          20 FTCTAIGEPESIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             EEEEEEEeCCeEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            5555555   789998 56665543      11222489999999999999999999999986 55555554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.40  E-value=3.5e-06  Score=63.57  Aligned_cols=76  Identities=20%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccCC----cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC--ceeeEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG--TDKGTAKV  514 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g--~~~~s~~~  514 (716)
                      |+.+.|.|.+.+.|.+.+.|.+++.......    ...+........|.|.++.++|+|.|.|.|.|..+  ....++.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            5678999999999999999998775432111    11111122356899999999999999999999876  55566655


Q ss_pred             EE
Q psy7040         515 TV  516 (716)
Q Consensus       515 ~v  516 (716)
                      +|
T Consensus        81 ~V   82 (84)
T cd05861          81 TV   82 (84)
T ss_pred             EE
Confidence            54

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.39  E-value=1.1e-06  Score=68.09  Aligned_cols=59  Identities=20%  Similarity=0.325  Sum_probs=47.3

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV  696 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l  696 (716)
                      |.|.+.|    .+.|+++|..+..+      .......|.|.++...|.|.|+|.|.|..|....+..|
T Consensus        23 L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          23 FSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             EEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence            5666666    79999999877543      12223689999999999999999999999998877765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.39  E-value=8e-07  Score=66.18  Aligned_cols=61  Identities=20%  Similarity=0.166  Sum_probs=47.4

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+...      .......|.|.++...|.|.|+|.|.|..|.....+.+.+
T Consensus         6 l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           6 FTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             EEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            5666666    89999998766443      1123368999999999999999999999999876665554

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.38  E-value=1.2e-06  Score=68.49  Aligned_cols=61  Identities=18%  Similarity=0.266  Sum_probs=48.3

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+....           ......|.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus        22 l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          22 LTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence            6676666    899999887654321           112257999999999999999999999999998888765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.38  E-value=1.1e-06  Score=67.66  Aligned_cols=66  Identities=20%  Similarity=0.123  Sum_probs=51.7

Q ss_pred             eccCcee----eEEEEeCCeEeee--------c---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTI--------D---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~--------~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                      |.|.+.|    .+.|+++|..+..        .   .......|.|.++...|+|.|.|.|.|..|.....+.|.|....
T Consensus         6 L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~   85 (90)
T cd05726           6 FQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVI   85 (90)
T ss_pred             EEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeecc
Confidence            6777776    7999998864310        1   01112579999999999999999999999999999999999754


Q ss_pred             C
Q psy7040         703 S  703 (716)
Q Consensus       703 ~  703 (716)
                      .
T Consensus        86 ~   86 (90)
T cd05726          86 A   86 (90)
T ss_pred             c
Confidence            4

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.38  E-value=9.7e-07  Score=67.63  Aligned_cols=54  Identities=19%  Similarity=0.131  Sum_probs=42.3

Q ss_pred             eEEEEeCCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEEE
Q psy7040         645 ESQYLMNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVV  698 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~v  698 (716)
                      .+.|++++..+....   ......|.|.++...|+|.|+|.|.|..|... ....|.|
T Consensus        33 ~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          33 YIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            789999998775431   12235899999999999999999999999864 3555655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.37  E-value=7.2e-06  Score=62.97  Aligned_cols=82  Identities=15%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             cccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEecc--CCcEEEEeC----CCeEEEEECCCCCCC-ceeEEEEEEcC
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIIS--KDRFKIVND----DKSTKLKVFDSKRGD-SGIYTLAVKNS  504 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~--~~~~~~~~~----~~~~~l~i~~l~~~~-~~~y~~~a~n~  504 (716)
                      .....+..|+.+.|.|.+.+.|.| .+.|...+..+..  ..++.+...    +..+.|.|.++...| .|.|.|.|.|.
T Consensus         8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~   87 (98)
T cd05898           8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS   87 (98)
T ss_pred             CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence            455778899999999999777776 4688777666543  456766554    478899999998766 78999999999


Q ss_pred             CCceeeEEEE
Q psy7040         505 WGTDKGTAKV  514 (716)
Q Consensus       505 ~g~~~~s~~~  514 (716)
                      .|.+...+.+
T Consensus        88 ~G~d~~~i~L   97 (98)
T cd05898          88 FGSGTAIIQL   97 (98)
T ss_pred             CccceEEEEe
Confidence            9998776654

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.36  E-value=1.2e-06  Score=63.07  Aligned_cols=60  Identities=12%  Similarity=0.010  Sum_probs=45.9

Q ss_pred             eccCcee----eEEEEeCCeEeeeccc---ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNV---DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  697 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~---~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~  697 (716)
                      |.|.+.|    .+.|+|+|.++.....   ....+|.|.++..+|+|.|+|.|.|....-.....++
T Consensus         3 l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           3 LTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             EEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            6677777    8999999988765411   1225899999999999999999999866655555444

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.35  E-value=1.4e-06  Score=67.00  Aligned_cols=62  Identities=19%  Similarity=0.135  Sum_probs=47.3

Q ss_pred             eccCcee----eEEEEeCC----eEeeec---------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeE
Q psy7040         638 SLMPISL----ESQYLMND----KRVTID---------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI  694 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~----~~~~~~---------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~  694 (716)
                      |.|.+.|    .+.|++++    ..+...               .......|.|.++..+|+|.|+|.|.|..|...+++
T Consensus         6 l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa   85 (90)
T cd04974           6 FHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSA   85 (90)
T ss_pred             EEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCcccCCE
Confidence            6777777    99999853    222111               011225799999999999999999999999999999


Q ss_pred             EEEEe
Q psy7040         695 EVVVT  699 (716)
Q Consensus       695 ~l~v~  699 (716)
                      .|.|.
T Consensus        86 ~L~V~   90 (90)
T cd04974          86 WLTVL   90 (90)
T ss_pred             EEEeC
Confidence            99873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.34  E-value=7.1e-06  Score=63.85  Aligned_cols=83  Identities=45%  Similarity=0.825  Sum_probs=65.0

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEeccc--CCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~--~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      ++..+.+.....+++.|+|+++.... ..+..|.|++.......|..+...  ....+.|.+|.|++.|.++|+|.+..|
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~   81 (93)
T cd00063           3 PPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG   81 (93)
T ss_pred             CCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCc
Confidence            44556777777899999999886433 337889999987665667666654  557899999999999999999999878


Q ss_pred             cCCCcc
Q psy7040         135 ESEPLE  140 (716)
Q Consensus       135 ~~~~s~  140 (716)
                      .+.++.
T Consensus        82 ~~~~s~   87 (93)
T cd00063          82 ESPPSE   87 (93)
T ss_pred             cCCCcc
Confidence            776554

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.34  E-value=1.3e-05  Score=61.76  Aligned_cols=71  Identities=15%  Similarity=0.280  Sum_probs=56.5

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEe--------ccCCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~--------~~~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      .++.+..|+.+.|.|.+.+.|.+.+.|++++..+        ....++.+... .....|.|.++.+.|.|.|+|.+...
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            4678999999999999999999999999877532        12344443333 24679999999999999999999983

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.32  E-value=1.2e-05  Score=62.57  Aligned_cols=86  Identities=41%  Similarity=0.739  Sum_probs=66.5

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  405 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~  405 (716)
                      .+|.++.+......++.|.|.++...+ ..+..|.|.+.......|............+.+.+|.+++.|.|+|+|.+..
T Consensus         2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~   80 (93)
T cd00063           2 SPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG   80 (93)
T ss_pred             cCCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCC
Confidence            456678888778899999999975443 3577899999876545565554433477889999999999999999999987


Q ss_pred             CCCCCCC
Q psy7040         406 GPGEPSD  412 (716)
Q Consensus       406 g~~~~s~  412 (716)
                      |.+.++.
T Consensus        81 ~~~~~s~   87 (93)
T cd00063          81 GESPPSE   87 (93)
T ss_pred             ccCCCcc
Confidence            7776554

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.32  E-value=1.9e-06  Score=67.51  Aligned_cols=61  Identities=18%  Similarity=0.210  Sum_probs=47.0

Q ss_pred             eccCcee----eEEEEeCCeEeeec-----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID-----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~-----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++..+...           .......|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus        21 l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          21 LTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence            5565555    79999988554422           1122358999999999999999999999999988887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.31  E-value=1.4e-06  Score=64.19  Aligned_cols=61  Identities=16%  Similarity=0.172  Sum_probs=46.8

Q ss_pred             eccCcee----eEEEEe-CCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLM-NDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~-~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++ ++..+....   .....+|.|..+...|.|.|+|.|.|..|..+.+..|.|
T Consensus         6 l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           6 LRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             EEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6677776    899997 566554331   112367999999999999999999999999887777764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.29  E-value=1.5e-05  Score=60.56  Aligned_cols=84  Identities=24%  Similarity=0.344  Sum_probs=67.1

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCe-EEEEeCCeEeccCCcEEEEeCC-----CeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKDRFKIVNDD-----KSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      ..+.+.+|+.+.|.|.+.+.|.|+ +.|.+++..+.......+....     ....|.|..++..+.|.|+|.|.|..+.
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            457899999999999999999998 9999998766433321122221     3478999999999999999999999999


Q ss_pred             eeeEEEEEEE
Q psy7040         508 DKGTAKVTVL  517 (716)
Q Consensus       508 ~~~s~~~~v~  517 (716)
                      .+.+..+.+.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            8888877653

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.28  E-value=2.6e-06  Score=66.79  Aligned_cols=61  Identities=13%  Similarity=0.106  Sum_probs=46.0

Q ss_pred             eccCcee----eEEEEeC--CeEeeec-----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMN--DKRVTID-----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~--~~~~~~~-----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++  +..+...           .......|.|.++.++|+|.|.|.|.|..|....+..|.|
T Consensus        21 l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          21 LSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence            6666666    7999994  4433211           1112357999999999999999999999999988887764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.28  E-value=4.9e-06  Score=63.27  Aligned_cols=76  Identities=24%  Similarity=0.280  Sum_probs=60.5

Q ss_pred             cccEEEecCCeEEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      +..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+...  .  .  .....|.|.++.+.|.|.|.|.|.|..|....+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~--~--~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~   81 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--A--M--DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT   81 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--c--c--ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence            34567899999999999864 688899999988664321  1  1  123489999999999999999999999988877


Q ss_pred             EEE
Q psy7040         512 AKV  514 (716)
Q Consensus       512 ~~~  514 (716)
                      +.+
T Consensus        82 ~~l   84 (85)
T cd05754          82 ATL   84 (85)
T ss_pred             EEE
Confidence            654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.28  E-value=2.3e-06  Score=65.84  Aligned_cols=61  Identities=20%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             eccCcee----eEEEEeC----CeEeeecc---------------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeE
Q psy7040         638 SLMPISL----ESQYLMN----DKRVTIDN---------------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI  694 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~----~~~~~~~~---------------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~  694 (716)
                      |.|.+.|    .+.|+++    |..+....               ......|.|.++..+|+|.|+|.|.|..|....++
T Consensus         6 L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a   85 (90)
T cd05858           6 FVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGISHHSA   85 (90)
T ss_pred             EEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCcccceE
Confidence            6677766    8999984    33332110               01125799999999999999999999999999999


Q ss_pred             EEEE
Q psy7040         695 EVVV  698 (716)
Q Consensus       695 ~l~v  698 (716)
                      .|.|
T Consensus        86 ~L~V   89 (90)
T cd05858          86 WLTV   89 (90)
T ss_pred             EEEE
Confidence            8887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.26  E-value=2.3e-06  Score=63.41  Aligned_cols=54  Identities=11%  Similarity=0.041  Sum_probs=42.2

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCC----CCcEEEEEEEEcCCCCce
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQR----SDTAQYTVTATNSQGKDQ  691 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~----~~~y~y~~~a~n~~G~~~  691 (716)
                      |.|.+.|    .+.|+++|..+...      .......|.|..+..    +|+|.|+|.|.|..|...
T Consensus         3 l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           3 IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             EEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            6788888    89999999887533      112236788888854    689999999999999764

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.24  E-value=3.1e-06  Score=65.51  Aligned_cols=54  Identities=19%  Similarity=0.126  Sum_probs=42.4

Q ss_pred             eccCcee----eEEEEeCCeEeeecc----cceeeEEEEccCC-CCCcEEEEEEEEcCCCCce
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN----VDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQ  691 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~----~~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~  691 (716)
                      |.|.+.|    .+.|+++|..+....    ......|.|.++. +.|+|.|+|.|.|..|...
T Consensus        24 l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          24 LNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             EEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            6677777    999999999886431    1122578898885 6999999999999999874

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.23  E-value=1e-05  Score=62.38  Aligned_cols=67  Identities=22%  Similarity=0.291  Sum_probs=51.1

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCC-CCCceeEEEEEEcCCCcee
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~  509 (716)
                      +..+.|.|.+.+.|.+.+.|++++..+.......+...  ...|.|.++. ..|.|.|+|.|.|..|...
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~--~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV--GGNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE--CCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            35789999999999999999999988743222222222  2368888876 5899999999999999654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.22  E-value=4.8e-06  Score=64.16  Aligned_cols=60  Identities=18%  Similarity=0.290  Sum_probs=42.0

Q ss_pred             eccCcee---eEEEEe-CCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCC-ceeeEEEE
Q psy7040         638 SLMPISL---ESQYLM-NDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGK-DQVFIEVV  697 (716)
Q Consensus       638 ~~~~~~~---~~~W~~-~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~-~~~s~~l~  697 (716)
                      |.|.+.|   .+.|++ ++..+...       .......|+|.++..+|+|.|+|.|.|..|. ...+..|.
T Consensus        20 l~C~~~G~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~   91 (92)
T cd04977          20 FLCQVIGEPKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK   91 (92)
T ss_pred             EEEEeEeeCCeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence            4444444   789997 66655432       1122358999999999999999999999754 46666554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.20  E-value=5.8e-06  Score=63.67  Aligned_cols=59  Identities=12%  Similarity=0.063  Sum_probs=45.2

Q ss_pred             eccCcee----eEEEEeCCeEeeec---ccceeeEEEEccCC-CCCcEEEEEEEEcCCCCcee-eEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID---NVDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQV-FIEV  696 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~~-s~~l  696 (716)
                      |.|.+.|    .+.|++++..+...   .......|.|.++. ..|+|.|+|.|.|..|...+ .+.|
T Consensus        24 l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          24 VNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             EeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            8888888    99999999887532   11122689999985 68999999999999998743 4444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.20  E-value=4.9e-06  Score=61.47  Aligned_cols=55  Identities=16%  Similarity=0.110  Sum_probs=41.5

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCC----CcEEEEEEEEcCCCCcee
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRS----DTAQYTVTATNSQGKDQV  692 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~----~~y~y~~~a~n~~G~~~~  692 (716)
                      |.|.+.|    ++.|+++|.++...      .......|.|..+...    |.|.|+|.|.|..|...+
T Consensus         3 l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           3 IQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             EEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            7788888    99999999876432      1122367778777653    789999999999998654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.19  E-value=3.9e-06  Score=63.32  Aligned_cols=61  Identities=21%  Similarity=0.163  Sum_probs=45.8

Q ss_pred             eccCcee----eEEEEeCCe---Ee--eec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDK---RV--TID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~---~~--~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++.   .+  ...      .......|.|.++.++|+|.|.|.|.|..|+...++.|+|
T Consensus         6 l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   81 (81)
T cd05765           6 FHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV   81 (81)
T ss_pred             EEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence            6777777    799999632   11  111      0112257999999999999999999999999988888765

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.19  E-value=1.3e-05  Score=60.03  Aligned_cols=68  Identities=13%  Similarity=0.269  Sum_probs=54.8

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      +.+..+..|+.+.|.|.+.+ +.+.+.|++++..+..+ .++.+ ..   ..|.|.++...|.|.|+|.|.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~---~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YR---DGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-EC---CcEEEeCCCHHHCEEEEEEEEecc
Confidence            34678999999999999864 67899999999998765 34433 22   269999999999999999998764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.19  E-value=1.4e-05  Score=61.17  Aligned_cols=76  Identities=13%  Similarity=0.156  Sum_probs=58.9

Q ss_pred             EEEecCCeEEEEEEEecc-----CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         436 IKVRAGSNFEFDINVIGE-----PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      ..+..|....+.|.....     |.+.+.|++++..+........    ....|.|.++..+|.|.|+|.|.|..|....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            457788888999977432     5679999999998875543332    3458999999999999999999999887665


Q ss_pred             EEEEE
Q psy7040         511 TAKVT  515 (716)
Q Consensus       511 s~~~~  515 (716)
                      .....
T Consensus        81 ~~t~t   85 (92)
T cd05757          81 NVTRT   85 (92)
T ss_pred             EEEEE
Confidence            54443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.19  E-value=1.1e-05  Score=61.93  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=58.2

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCC--cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC-ceee
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-TDKG  510 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g-~~~~  510 (716)
                      ..+.+..|+.+.|.|.+.+ |.+.+.|++++..+....  ..++...  ...|.|.++.+.|.|.|.|.|.|..+ ....
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence            3567889999999999987 888999999998765432  1222222  23589999999999999999987654 3344


Q ss_pred             EEEEEE
Q psy7040         511 TAKVTV  516 (716)
Q Consensus       511 s~~~~v  516 (716)
                      +..+.|
T Consensus        81 ~~~l~V   86 (89)
T cd04979          81 TYSLNV   86 (89)
T ss_pred             EEEEEE
Confidence            444443

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.17  E-value=7.2e-06  Score=63.51  Aligned_cols=59  Identities=15%  Similarity=0.090  Sum_probs=43.9

Q ss_pred             eccCcee----eEEEEeCCeEeeecc----cceeeEEEEccCC-CCCcEEEEEEEEcCCCCcee-eEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN----VDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQV-FIEV  696 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~----~~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~~-s~~l  696 (716)
                      |.|.+.|    .++|+++|..+....    ......|.|.++. ..|.|.|+|.|.|..|...+ .+.|
T Consensus        24 l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          24 LGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             EEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            6677776    899999999886431    1112578888865 69999999999999998743 4433

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.16  E-value=6.4e-06  Score=60.86  Aligned_cols=56  Identities=14%  Similarity=-0.015  Sum_probs=41.5

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCC----CCcEEEEEEEEcCCCCceee
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQR----SDTAQYTVTATNSQGKDQVF  693 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~----~~~y~y~~~a~n~~G~~~~s  693 (716)
                      |.|.+.|    .+.|+++|+.+...      .......|.|..+..    +|+|.|+|.|.|..|.....
T Consensus         3 l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           3 IECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             EEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            6788888    99999999865321      112336788887642    46999999999999977533

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.14  E-value=7.7e-06  Score=61.99  Aligned_cols=61  Identities=15%  Similarity=0.147  Sum_probs=46.4

Q ss_pred             eccCcee------eEEEEeCCeEeeec-----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL------ESQYLMNDKRVTID-----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~------~~~W~~~~~~~~~~-----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|      .+.|.++++.+...           .......|.|.++...|+|.|+|.|.|..|..+.+..|.|
T Consensus         6 L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742           6 LNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             EEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            5555555      48998766543211           1123468999999999999999999999999999988876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.13  E-value=8.6e-06  Score=63.85  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=45.8

Q ss_pred             eccCcee-----eEEEEeCCeEeeecc-c-----------ceeeEEEEccCCC-CCcEEEEEEEEcCCCCceeeEEE
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDN-V-----------DYFTKITIRPLQR-SDTAQYTVTATNSQGKDQVFIEV  696 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~-~-----------~~~~~~~i~~l~~-~~~y~y~~~a~n~~G~~~~s~~l  696 (716)
                      |.|.+.|     .+.|++++..+.... .           .....|.|.++.. ++.|.|+|.|.|..|.....+.|
T Consensus        21 L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          21 VECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence            6777766     489999998775431 0           1124799999999 55999999999999998887765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.12  E-value=8.7e-06  Score=60.82  Aligned_cols=60  Identities=12%  Similarity=0.061  Sum_probs=43.2

Q ss_pred             eccCcee----eEEEEeCCeEeee--------c---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTI--------D---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVV  697 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~--------~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~  697 (716)
                      |.|.+.|    .+.|++++.....        .   ......+|.|.++..+|+|.|+|.|.|..|.+ +.+..|.
T Consensus         3 l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           3 LNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             eEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            6787777    8999996432110        0   01123689999999999999999999999987 4444444

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.12  E-value=6.3e-06  Score=63.00  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=45.0

Q ss_pred             eccCc-ee----eEEEEeCCeEeeeccc----ceeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEE
Q psy7040         638 SLMPI-SL----ESQYLMNDKRVTIDNV----DYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVV  697 (716)
Q Consensus       638 ~~~~~-~~----~~~W~~~~~~~~~~~~----~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~  697 (716)
                      |.|.+ .|    .+.|+++|..+.....    .....|.|.++...|.|.|+|.|.|..|... ..+.|.
T Consensus        16 l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~   85 (86)
T cd05724          16 LECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS   85 (86)
T ss_pred             EEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence            56655 34    7999999988765311    1135799999999999999999999999864 445444

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>TIGR00864 PCC polycystin cation channel protein

Probab=98.10  E-value=0.057  Score=65.28  Aligned_cols=273  Identities=11%  Similarity=0.025  Sum_probs=133.7

Q ss_pred             CeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCccccccccc-EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCC
Q psy7040         393 NQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSD-IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD  471 (716)
Q Consensus       393 ~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~-~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~  471 (716)
                      ..|.+.|.|.|..|....+   ..+.+..+..-..|....... .-+..+..+.|...+.--......|..++..-..  
T Consensus      1754 G~y~VtVta~N~vss~~~s---~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~-- 1828 (2740)
T TIGR00864      1754 GLHLVTMKAFNELGSANAS---EEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM-- 1828 (2740)
T ss_pred             ceEEEEEEEEcccccccee---EEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc--
Confidence            4699999999999865432   223333222222222111111 1344566677776654323335677765433111  


Q ss_pred             cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE----EEEEEEeCCCCCCCCceeeEEEEEEecCCC
Q psy7040         472 RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL----GCSLKWNPPEDDGGAPIEYYMVEKMETDTG  547 (716)
Q Consensus       472 ~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~----~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~  547 (716)
                             +....++..   ..-.|.+++.|.|..+....+..+.+.    .+.|.-.+..-..+. ...+.+....... 
T Consensus      1829 -------gk~v~~Tf~---~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~-~v~fsa~l~~GS~- 1896 (2740)
T TIGR00864      1829 -------GKHACMTFP---DAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGE-KVEFQILLAAGSA- 1896 (2740)
T ss_pred             -------cceeEEecC---CCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCC-EEEEEEEecCCCc-
Confidence                   111122222   123567778999999988888888877    334332111111111 2334443333322 


Q ss_pred             ceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCccceeec----cceeE
Q psy7040         548 KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWL----LTLTD  623 (716)
Q Consensus       548 ~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~----~~~v~  623 (716)
                       ....|.-.+.... ....  ...+. ..-..-..|.++|.|.|..+.+.....+.|.++-..+. +..-.    .....
T Consensus      1897 -Vtf~w~fGdgs~~-~~t~--~~t~~-HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~-I~~~c~~~~~~g~~ 1970 (2740)
T TIGR00864      1897 -VNFRLQIGGAAPE-VLQP--GPRFS-HSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQ-IPDCCAAGIATGEE 1970 (2740)
T ss_pred             -eEEEEEeCCCCce-eecC--CCeEE-eecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceE-ecCCcccceecCce
Confidence             2234433321111 0000  12222 22233346999999999999888877777655543332 11110    11111


Q ss_pred             EEEE---EeeEEEEeeeeccCceeeEEEEeCCeEeeec----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040         624 VTWE---ISNYLQELHSSLMPISLESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV  696 (716)
Q Consensus       624 l~w~---i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l  696 (716)
                      ..|.   ..|..|           .+.|+..-..+..+    ..+...++...   ..-.|+.+++|.|..|.......+
T Consensus      1971 ~tF~A~v~~g~~V-----------~f~W~f~~~~~~g~~~~~~~G~~vty~~~---~~G~~~I~v~A~N~l~s~n~t~~i 2036 (2740)
T TIGR00864      1971 KNFTANVQRGKPV-----------AFAWTFDLHHLHGDSLVIHMGKDVSYTAE---AAGLLEIQLGAFNALGAENITLQL 2036 (2740)
T ss_pred             EEEEEEEecCCce-----------EEEEEeeecccCCCcceeecCCceEEccC---CCcEEEEEEEEEcccCcccccEEE
Confidence            1111   122222           67887442111111    01122344443   344577888999999998777777


Q ss_pred             EEecCC
Q psy7040         697 VVTDKP  702 (716)
Q Consensus       697 ~v~~~p  702 (716)
                      +|+.+.
T Consensus      2037 ~VQ~~i 2042 (2740)
T TIGR00864      2037 EAQDAL 2042 (2740)
T ss_pred             EEEehe
Confidence            777644

Note: this model has been restricted to the amino half because for technical reasons.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.10  E-value=5.3e-06  Score=63.08  Aligned_cols=52  Identities=21%  Similarity=0.256  Sum_probs=43.1

Q ss_pred             eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040         645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV  696 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l  696 (716)
                      .+.|++++..+..........|.|.++.++|+|.|.|.|.|..|...+++.|
T Consensus        33 ~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          33 TLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             EEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            7899998876543333334689999999999999999999999999888765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.09  E-value=7.4e-06  Score=63.11  Aligned_cols=54  Identities=20%  Similarity=0.169  Sum_probs=42.7

Q ss_pred             eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         645 ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       645 ~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      .+.|+|++..+...      .......|.|.++..+|+|.|.|.|.|..|..+.++.|+|
T Consensus        35 ~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          35 NLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV   94 (94)
T ss_pred             eEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence            78999998654321      1112357999999999999999999999999988888765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.09  E-value=8.8e-06  Score=60.43  Aligned_cols=52  Identities=12%  Similarity=0.109  Sum_probs=38.4

Q ss_pred             eccCcee-----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCce
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ  691 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~  691 (716)
                      |.|.+.|     ++.|+++|..+..........|.|.++.  |.|.|.|.|.|..|...
T Consensus        18 l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~   74 (81)
T cd05749          18 LTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTT   74 (81)
T ss_pred             EEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEcccc--CCeEEEEEEEeccCcEE
Confidence            4455555     4899999998864222233578898874  67999999999999764

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.06  E-value=1.9e-05  Score=58.25  Aligned_cols=59  Identities=17%  Similarity=0.307  Sum_probs=49.3

Q ss_pred             cEEEecCCeEEEEEEEeccCC-CeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         435 DIKVRAGSNFEFDINVIGEPI-PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      ...+.+|+.+.|.|.+.+.|. ..+.|++++..+..          ....|.|.++ .++.|.|+|.|.|.
T Consensus         9 ~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           9 WTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            467889999999999998876 46999999987621          2347889999 99999999999886

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.06  E-value=1.5e-05  Score=61.01  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=43.2

Q ss_pred             eEEEEeCCeEeeecccc--eeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         645 ESQYLMNDKRVTIDNVD--YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~~~--~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      .+.|+|++.++......  ....|.|.++..+|+|.|+|.|.|..|......+.++
T Consensus        31 ~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~   86 (92)
T cd05757          31 PVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI   86 (92)
T ss_pred             cEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence            78999999988654211  3478999999999999999999999998866555443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=98.06  E-value=0.0066  Score=56.76  Aligned_cols=227  Identities=15%  Similarity=0.228  Sum_probs=120.4

Q ss_pred             EEEecCCccEEEEeccccCcceEEEEEEEeCCCC-ceeEEEEEEec---CCCCCCC----CeEEeEEeCC--eEEEEEEC
Q psy7040         177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIVLD---KPSPPGG----PLKVSNVHAE--GVTLDWKV  246 (716)
Q Consensus       177 ~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~~~v~~---~p~~p~~----~~~~~~~~~~--~~~l~W~~  246 (716)
                      .+.-.+....++|.+|+++..|.|.+++.|.... .+.-....+..   ....|..    .+......+.  .-.++...
T Consensus         7 ~~vCvg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~v   86 (300)
T PF10179_consen    7 QIVCVGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKV   86 (300)
T ss_pred             EEEEcCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcC
Confidence            3445677889999999999999999999998555 33322222222   1212211    1222222222  13344554


Q ss_pred             CCCCCCCccceEEEEEEeCC-------CCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccc-eEEe
Q psy7040         247 PDDDGGQPIEKYVVDKMDEA-------TGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA-SIEA  318 (716)
Q Consensus       247 p~~~~~~~~~~y~v~~~~~~-------~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~-~~~~  318 (716)
                      |.......-..+.+.-+...       .+.-.........-..+.+.++.|+..|.+++.+.+..... ...... ..+.
T Consensus        87 P~~~~~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e~~-~~~kV~aast~  165 (300)
T PF10179_consen   87 PKRSSTHQSLWLFVQSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDEGP-STFKVQAASTN  165 (300)
T ss_pred             CcCCCCCccEEEEEEeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCCCc-eEEEEEEecCC
Confidence            42111111222223222111       11001111112345789999999999999999876643321 111111 1122


Q ss_pred             cCCCCCCCCCCCcEEEeee----CCeEEEEecCCCCCCCccceEEEEEEeecCCC----------------------ceE
Q psy7040         319 KNPFNQPGKPGTPEIKDFD----TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP----------------------IWE  372 (716)
Q Consensus       319 ~~~~~~p~~p~~~~~~~~~----~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~----------------------~~~  372 (716)
                      ......|.-|.+..+....    -++++|.|.+..+.   . ..|=|+.+.....                      ++.
T Consensus       166 ~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~---~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v  241 (300)
T PF10179_consen  166 PSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDR---S-IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKV  241 (300)
T ss_pred             cccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCC---C-ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEE
Confidence            2233567788888886544    38899999983322   1 3466655433211                      112


Q ss_pred             EEeeec---------CCCCeEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040         373 KCAQTE---------GDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  408 (716)
Q Consensus       373 ~~~~~~---------~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~  408 (716)
                      .+....         ..-...+|.+|+||+.|.|.|.+.-..|.+
T Consensus       242 ~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~s  286 (300)
T PF10179_consen  242 LCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQS  286 (300)
T ss_pred             EEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCCce
Confidence            221111         111345799999999999999998766654

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.04  E-value=3.3e-05  Score=58.22  Aligned_cols=62  Identities=13%  Similarity=0.111  Sum_probs=43.5

Q ss_pred             eccCcee----eEEEEeCCeEeeec----------ccceeeEEEEccCCCCCcEEEEEEEEcCCC--CceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID----------NVDYFTKITIRPLQRSDTAQYTVTATNSQG--KDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G--~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|.+.++.....          .......|.|.++..+|+|.|+|.|.|..+  ....+..|+|.
T Consensus         6 l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~   83 (84)
T cd05861           6 VNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH   83 (84)
T ss_pred             EEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence            5555554    78998866422111          122246899999999999999999999877  55666666664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>KOG4802|consensus

Probab=98.03  E-value=0.00023  Score=66.90  Aligned_cols=176  Identities=23%  Similarity=0.330  Sum_probs=103.1

Q ss_pred             CCCCCceE-EEEeCCeEEEEecCCCCCCCCccceEEEEE------------EcCCCCcEEEecccCC-CeEEecCCCCCc
Q psy7040          56 DPEGPLEV-SNIHKDGCTLKWNKPKDDGGEPLEGYLVEK------------YDPETGVWIPVGKTRE-PEMDVTGLTPGH  121 (716)
Q Consensus        56 ~p~~~l~~-~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~------------~~~~~~~~~~~~~~~~-~~~~i~~L~~~~  121 (716)
                      .||.+..+ ......++.+.|.--.     .+.-|.+.+            +..+...|+.+..... ..+...++.||.
T Consensus       146 l~Pr~k~~y~r~~~g~~av~w~~~~-----~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPgR  220 (516)
T KOG4802|consen  146 LPPRPKILYFRRSRGSHAVDWKIES-----SLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPGR  220 (516)
T ss_pred             CCCcchhhhhhhccCceeeeeeecc-----ccceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcce
Confidence            34444333 3566678999998532     122233322            1233446777665544 489999999999


Q ss_pred             EEEEEEEEEecCccCCCccccceEEe-cCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEE
Q psy7040         122 EYKFRVKALNKEGESEPLETFSSIIA-RDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFY  200 (716)
Q Consensus       122 ~y~~~v~a~~~~g~~~~s~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y  200 (716)
                      -|+|||.|+|.+|.-..+........ ++|                                                  
T Consensus       221 wyefrvaavn~~G~rGFs~PSkpf~ssk~p--------------------------------------------------  250 (516)
T KOG4802|consen  221 WYEFRVAAVNAYGFRGFSEPSKPFPSSKNP--------------------------------------------------  250 (516)
T ss_pred             eEEEEEeeeecccccccCCCCCCCCCCCCC--------------------------------------------------
Confidence            99999999999985544433322111 100                                                  


Q ss_pred             EEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeC---CeEEEEEECCCCCCCCccceEEEEEEeCCCC---CeEEcc
Q psy7040         201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHA---EGVTLDWKVPDDDGGQPIEKYVVDKMDEATG---RWTPAG  274 (716)
Q Consensus       201 ~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~---~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~---~~~~~~  274 (716)
                                          .+|.+|.+ +.+..+..   -...|.|.++..  .-|+..|.|.|...-..   ......
T Consensus       251 --------------------kaPp~P~d-l~l~~v~~dG~~~~~v~w~P~~s--dlPv~~Yki~Ws~~v~s~k~~m~tks  307 (516)
T KOG4802|consen  251 --------------------KAPPSPND-LKLIGVQFDGRYMLKVVWCPSKS--DLPVEKYKITWSLYVNSAKASMITKS  307 (516)
T ss_pred             --------------------CCCcCccc-ceeeeeeecceEEEEEEeCCCCC--CCcceeeEEEeehhhhhhhhhccccc
Confidence                                13444444 55543322   225677776543  34799999988543211   000000


Q ss_pred             ccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCC
Q psy7040         275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP  309 (716)
Q Consensus       275 ~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~  309 (716)
                      ........+.|++|.|+..|.+.|.|....|....
T Consensus       308 ~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL  342 (516)
T KOG4802|consen  308 SYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL  342 (516)
T ss_pred             ceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence            00112234559999999999999999998886643

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.01  E-value=1.4e-05  Score=62.27  Aligned_cols=61  Identities=11%  Similarity=0.051  Sum_probs=43.9

Q ss_pred             eccCcee----eEEEEeCCeEeeeccc-----ceeeEEEEccC-----CCCCcEEEEEEEEcC-CCCc-eeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNV-----DYFTKITIRPL-----QRSDTAQYTVTATNS-QGKD-QVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~-----~~~~~~~i~~l-----~~~~~y~y~~~a~n~-~G~~-~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+|+|..+.....     .....+.|.++     .+.|.|.|+|.|.|. .|.. +..+.|.|
T Consensus        19 l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          19 LNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence            6666666    8999999998864411     11234667666     589999999999999 9987 44555543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>smart00410 IG_like Immunoglobulin like

Probab=98.00  E-value=0.0002  Score=54.56  Aligned_cols=82  Identities=27%  Similarity=0.479  Sum_probs=66.9

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeC-CeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCN-DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  513 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~  513 (716)
                      .+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...+.|.|.|.+.+..+.......
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            35678899999999999888889999998 77766556666666655679999999999999999999988887666555


Q ss_pred             EEE
Q psy7040         514 VTV  516 (716)
Q Consensus       514 ~~v  516 (716)
                      +.+
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            543

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.00  E-value=0.0002  Score=54.56  Aligned_cols=82  Identities=27%  Similarity=0.479  Sum_probs=66.9

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeC-CeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCN-DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  513 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~  513 (716)
                      .+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...+.|.|.|.+.+..+.......
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            35678899999999999888889999998 77766556666666655679999999999999999999988887666555


Q ss_pred             EEE
Q psy7040         514 VTV  516 (716)
Q Consensus       514 ~~v  516 (716)
                      +.+
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            543

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=97.99  E-value=2e-05  Score=60.18  Aligned_cols=54  Identities=19%  Similarity=0.181  Sum_probs=43.2

Q ss_pred             eEEEEeCCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         645 ESQYLMNDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       645 ~~~W~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      .+.|++++..+...       .......|.|.++..+|.|.|.|.|.|..|....+..|.|
T Consensus        25 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v   85 (85)
T cd05729          25 TITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV   85 (85)
T ss_pred             eEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence            78999998876533       1122257899999999999999999999999888877764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=97.99  E-value=2.5e-05  Score=61.87  Aligned_cols=61  Identities=21%  Similarity=0.151  Sum_probs=42.4

Q ss_pred             eccCcee----eEEEEeCCeEeeec-----------ccceeeEEEE--ccCCCCCcEEEEEEEEcCCCC-ceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID-----------NVDYFTKITI--RPLQRSDTAQYTVTATNSQGK-DQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~-----------~~~~~~~~~i--~~l~~~~~y~y~~~a~n~~G~-~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|..+...           ..+....+.+  ..+...|+|.|+|.|.|..|. .+..+.|.|
T Consensus        21 l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          21 LNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence            6677776    89999999987652           0111112222  234689999999999999999 466666665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.98  E-value=0.0001  Score=57.44  Aligned_cols=81  Identities=19%  Similarity=0.293  Sum_probs=58.0

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEe--------ccCCcEEEEe-CCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      .++.+..|+.+.|.|.+.+.+.+.+.|++.+...        ....++.+.. ......|.|.++...|.|.|.|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            4578999999999999988888899998533211        1234454432 234568999999999999999999976


Q ss_pred             CCceeeEEEEE
Q psy7040         505 WGTDKGTAKVT  515 (716)
Q Consensus       505 ~g~~~~s~~~~  515 (716)
                      .. ...+..++
T Consensus        85 ~~-~~~~~~~~   94 (95)
T cd05717          85 PV-QTAKATVT   94 (95)
T ss_pred             CC-ceEEEEEE
Confidence            53 34444443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.95  E-value=3.1e-05  Score=58.84  Aligned_cols=79  Identities=15%  Similarity=0.192  Sum_probs=60.3

Q ss_pred             CcccccccccEEEecCCeEEEEEE-EeccCCCeEEEEeCCeEec-cCCcEEEEeCCCeEEEEECCCCCCCce-eEEEEEE
Q psy7040         426 PYINRDQLSDIKVRAGSNFEFDIN-VIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKRGDSG-IYTLAVK  502 (716)
Q Consensus       426 P~~~~~~~~~~~~~~g~~~~~~~~-v~~~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~i~~l~~~~~~-~y~~~a~  502 (716)
                      |.+.......+.+.+|..+.|.|. -.+.|.+.+.|.+++.... .+.++.+..   ...|.|.++.+.|.| .|.|.|.
T Consensus         3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~---~GnL~fs~v~~~D~g~~Y~C~a~   79 (95)
T cd05845           3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQ---NGNLYFANVEEQDSHPDYICHAH   79 (95)
T ss_pred             CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECC---CceEEEEEEehhhCCCCeEEEEE
Confidence            444445567789999999999997 5999999999998765432 333333322   258999999999999 7999999


Q ss_pred             cCCCc
Q psy7040         503 NSWGT  507 (716)
Q Consensus       503 n~~g~  507 (716)
                      |....
T Consensus        80 ~~~~~   84 (95)
T cd05845          80 FPGLR   84 (95)
T ss_pred             ccccc
Confidence            87643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.95  E-value=8.6e-05  Score=55.97  Aligned_cols=74  Identities=38%  Similarity=0.674  Sum_probs=52.2

Q ss_pred             CCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC---cEEEecccC-CCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          58 EGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG---VWIPVGKTR-EPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        58 ~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~---~~~~~~~~~-~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +..+.+.....+++.|+|++|...++   .+|.+.+......   .|....... ...+.|.+|.+++.|.|+|+|.+..
T Consensus         4 p~~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~   80 (83)
T smart00060        4 PSNLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA   80 (83)
T ss_pred             CCcEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEccc
Confidence            33467777778899999997753321   6677776643322   344443333 4789999999999999999999875


Q ss_pred             c
Q psy7040         134 G  134 (716)
Q Consensus       134 g  134 (716)
                      |
T Consensus        81 g   81 (83)
T smart00060       81 G   81 (83)
T ss_pred             C
Confidence            5

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>TIGR00864 PCC polycystin cation channel protein

Probab=97.95  E-value=0.11  Score=63.05  Aligned_cols=217  Identities=12%  Similarity=0.023  Sum_probs=113.9

Q ss_pred             CeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCc
Q psy7040         393 NQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR  472 (716)
Q Consensus       393 ~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~  472 (716)
                      ..|.+.|.|.|..+.........+  .... .--.|..  .-...+..|....|.+.+.-.....+.|+.....+.....
T Consensus      1925 G~Y~VtV~A~N~Vs~~~a~~~V~V--le~V-~gL~I~~--~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~ 1999 (2740)
T TIGR00864      1925 DDHMVNLRAKNEVSCAQANLHIEV--LEAV-RGLQIPD--CCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSL 1999 (2740)
T ss_pred             CcEEEEEEEEeccceeeeeEEEEE--EEec-cceEecC--CcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcc
Confidence            469999999999887544332211  1111 0000100  0011257788889999886655667899866443333332


Q ss_pred             EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE---EEEEEEeCCCCCCCCceeeEEEEEEecCCCce
Q psy7040         473 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL---GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV  549 (716)
Q Consensus       473 ~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~---~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~  549 (716)
                        +...+....+...   ..-.|.+++.|.|..|.......+.+.   ....-|..|...--.....|.+.....+. ..
T Consensus      2000 --~~~~G~~vty~~~---~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~-~v 2073 (2740)
T TIGR00864      2000 --VIHMGKDVSYTAE---AAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPN-FM 2073 (2740)
T ss_pred             --eeecCCceEEccC---CCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCC-cE
Confidence              2222333344333   345688889999999988777666666   12233322321111113445554433221 23


Q ss_pred             eeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCC-CCCccceeeccceeEEE
Q psy7040         550 LIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP-SAPEGPIQWLLTLTDVT  625 (716)
Q Consensus       550 ~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p-~~~~~~~~~~~~~v~l~  625 (716)
                      ...|-..+.... .........+..  ..+| .|.++|.|.|..........+.|...+ ..|. +..+....+.+.
T Consensus      2074 ~~~WDFGDGt~~-~~T~~~~~sHtY--~r~G-~Y~V~V~a~N~VS~~~a~~~i~V~vl~C~~P~-V~i~~~~~~~i~ 2145 (2740)
T TIGR00864      2074 ACHWDFGDGSAG-QDTDEPRAEHEY--LHPG-DYRVQVNASNLVSFFSAHAEINVQVLACEEPE-VDVVLALQLAIR 2145 (2740)
T ss_pred             EEEEEecCCCCc-cccCCceeEEEe--cCCc-cEEEEEEEEcceeeeeeEEEEEEEEecCCCCC-cEeccCceeEEE
Confidence            356654432221 111111123332  3444 699999999998877777777754333 3344 666655555443

Note: this model has been restricted to the amino half because for technical reasons.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.94  E-value=4.1e-05  Score=54.23  Aligned_cols=63  Identities=24%  Similarity=0.418  Sum_probs=50.2

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      .|..+.|.|.+.+.+.+.+.|++++..+.  ....  .......|.|.++...+.|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNR--LSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC--CCCE--EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            36778999999889999999999988775  1111  223355899999999999999999998765

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.94  E-value=2.5e-05  Score=57.63  Aligned_cols=37  Identities=22%  Similarity=0.335  Sum_probs=31.7

Q ss_pred             eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      .+.|+++|..+..    ....|.|.++ .+|+|.|+|.|.|.
T Consensus        32 ~~~W~kng~~l~~----~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          32 STQWYHNGKLLET----TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             cEEEEECCEEeec----cCCeEEEeec-ccCCEEeEEECCCC
Confidence            6899999998733    2368999999 99999999999985

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>KOG3515|consensus

Probab=97.92  E-value=0.00062  Score=71.33  Aligned_cols=446  Identities=15%  Similarity=0.075  Sum_probs=203.1

Q ss_pred             eEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCC
Q psy7040         230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP  309 (716)
Q Consensus       230 ~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~  309 (716)
                      +......++.+.|.|..-   ++.|+..|.+........    ..........+...+.....-..|.|+|.|..|.  +
T Consensus        15 l~~~~~~g~~v~l~C~v~---~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~--~   85 (741)
T KOG3515|consen   15 LTVGLRLGEDVPLPCRVN---SNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM--P   85 (741)
T ss_pred             CChhhccCCcceeeeecC---CCCCCcceEEEecCcccc----cccccccCCceeeecchhhhhhhhhhhhcccccC--c
Confidence            334455788999999963   333677777665443322    2222234567888888888888999999997332  2


Q ss_pred             CcccceEEecCCCCCCC-CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEe---ecCCC------ceEEEeeecC
Q psy7040         310 LTTTASIEAKNPFNQPG-KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK---EKYSP------IWEKCAQTEG  379 (716)
Q Consensus       310 ~~~~~~~~~~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~---~~~~~------~~~~~~~~~~  379 (716)
                      +...  .... ....|. .+............+.+.|..-.  .+.+...|+....   .....      .+........
T Consensus        86 ~~~~--~~l~-v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~--~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t  160 (741)
T KOG3515|consen   86 SRCP--MILD-VDYPPACLPELGEIFQVDKGVVQIICSAKV--AGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYT  160 (741)
T ss_pred             eecc--eeec-cccCccccccccchhhhcCCeEEEEEeecC--CCCCCcceeeeeccEEeecccCCcccccccccCceec
Confidence            2211  1111 112222 23334455566778999995411  1112222322221   11000      0000000001


Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEE-eccCCCeE
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTK  458 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v-~~~p~~~~  458 (716)
                      ....+.+..........++|.|.+..-.....................+. .......+.+|..+.+.|.+ .+.|.+.+
T Consensus       161 ~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~-~~~~~qsF~~g~~inlvc~~~gg~P~~~~  239 (741)
T KOG3515|consen  161 EPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGIT-GAQEQQSFTEGQTINLVCNAQGGNPSQQQ  239 (741)
T ss_pred             cccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceec-chhhcCcccccceEEEEehhhcCCcchhh
Confidence            12233344444556677888888753332222222222222221111111 11122567789999999976 57788899


Q ss_pred             EEEeCCeEeccCCcEEEEeCC-CeEEEEECCCCCCC-ceeEEEEEEcCCCceeeEEEEEEE--EEEEEEeC--CCCCCCC
Q psy7040         459 EWLCNDITIISKDRFKIVNDD-KSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTVL--GCSLKWNP--PEDDGGA  532 (716)
Q Consensus       459 ~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~l~~~~-~~~y~~~a~n~~g~~~~s~~~~v~--~v~l~W~~--p~~~~~~  532 (716)
                      .|+++...............+ ...........+.+ .-...|.|.| .+....-..+...  .+.+.=..  -......
T Consensus       240 ~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~  318 (741)
T KOG3515|consen  240 TWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAASQITAVQVKPTAVPISTSDSGLSSGRSA  318 (741)
T ss_pred             hhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccccceeeecccccccccccCccccccccccc
Confidence            999987665432111111111 01111111122211 2234488887 2111111111111  00000000  0000001


Q ss_pred             ceeeEEEEEEecCCCceeeeEEEccceeeeecc------c---cceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee
Q psy7040         533 PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN------V---DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  603 (716)
Q Consensus       533 ~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~------~---~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~  603 (716)
                      .+..+.+.-.    +.....|.+..........      .   .....+.+..+...+...|.|.|.+..+....+....
T Consensus       319 r~~c~~sss~----p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~  394 (741)
T KOG3515|consen  319 RSSCVSSSSK----PPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFL  394 (741)
T ss_pred             ccceeccCCC----CccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEcccccccccccccccee
Confidence            1222222111    1222555543221110000      0   0124455566667788999999999775444333333


Q ss_pred             c--cCCCCCCcc-ceeeccceeEEEEEEeeEEEEeeeeccCcee--eEEEEeCCeEeeecccc------eeeEEEEccCC
Q psy7040         604 V--TDKPSAPEG-PIQWLLTLTDVTWEISNYLQELHSSLMPISL--ESQYLMNDKRVTIDNVD------YFTKITIRPLQ  672 (716)
Q Consensus       604 v--~~~p~~~~~-~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~--~~~W~~~~~~~~~~~~~------~~~~~~i~~l~  672 (716)
                      +  ..+|..+.. +..+......    +..+.+    ..|....  .+.|.+.+-++......      .....-+.++.
T Consensus       395 l~~l~~p~~L~~~~~~v~~~e~d----~~~~~~----~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~  466 (741)
T KOG3515|consen  395 LPVLPSPAFLVRHKTAVVAMEQD----HQAAPL----PVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVS  466 (741)
T ss_pred             ccccCCchhhhhcccceeeccCc----cccccC----cccCCCcccchhheecceecccccCceEEeeccccccccceee
Confidence            3  333332210 1111100000    111111    1111111  78888877666554111      11223344577


Q ss_pred             CCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy7040         673 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPS  703 (716)
Q Consensus       673 ~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~  703 (716)
                      ..|.|.|.|.|.|+.|.......+.+.+.|.
T Consensus       467 ~~d~g~y~~tatns~gg~~~~~~~~~~~sp~  497 (741)
T KOG3515|consen  467 RSDGGSYGLTATNSPGGAQAYLLLGVHTSPH  497 (741)
T ss_pred             eccCCcceeeeccCCCceeeEEeeccccCCc
Confidence            8899999999999999888777666665444

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.92  E-value=3.4e-05  Score=58.74  Aligned_cols=73  Identities=19%  Similarity=0.240  Sum_probs=56.2

Q ss_pred             ccEEEecCCeEEEEEEE-eccCCCeEEEEeCCeEe--ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         434 SDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITI--ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      ....+.+|..+.|.|.. .+.|.+.+.|++++...  ..+.+..+..  ....|.|.++...|.|.|.|.|.|.....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            44678899999999976 78899999999998754  2233333322  24489999999999999999999976543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.91  E-value=9.8e-05  Score=56.44  Aligned_cols=72  Identities=19%  Similarity=0.169  Sum_probs=54.2

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc--------------CCcEEEEe---CCCeEEEEECCCCCCCceeEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS--------------KDRFKIVN---DDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~--------------~~~~~~~~---~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      +.+..|+.+.|.|...+.+.+.+.|++++.....              ..++....   ......|+|.+++..|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            4578899999999999999999999976633211              11222222   334568999999999999999


Q ss_pred             EEEEcCCCc
Q psy7040         499 LAVKNSWGT  507 (716)
Q Consensus       499 ~~a~n~~g~  507 (716)
                      |.+.|..+.
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999998764

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.89  E-value=9e-05  Score=55.66  Aligned_cols=70  Identities=29%  Similarity=0.405  Sum_probs=54.0

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC-ceeeEEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-TDKGTAKV  514 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g-~~~~s~~~  514 (716)
                      ..+..|+.+.|.|.+.+.|...+.|++++..+.....          .+.+..+..++.|.|+|.|.+..+ ..+.++.+
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v   78 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV   78 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence            5588999999999999998999999998877642211          166788899999999999999665 33344444


Q ss_pred             E
Q psy7040         515 T  515 (716)
Q Consensus       515 ~  515 (716)
                      .
T Consensus        79 ~   79 (80)
T PF13895_consen   79 T   79 (80)
T ss_dssp             E
T ss_pred             e
Confidence            3

...

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.88  E-value=0.00019  Score=54.04  Aligned_cols=77  Identities=32%  Similarity=0.629  Sum_probs=53.1

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC---ceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEe
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP---IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  403 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n  403 (716)
                      +|.++.+......++.|+|.+|....+   .+|.+.+......   .|...... .....+.+.+|.+++.|.|+|+|.+
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~Y~v~v~a~~   78 (83)
T smart00060        3 PPSNLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVT-PSSTSYTLTGLKPGTEYEFRVRAVN   78 (83)
T ss_pred             CCCcEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEec-CCccEEEEeCcCCCCEEEEEEEEEc
Confidence            345577777777799999997644321   5677776644322   24433322 2257899999999999999999998


Q ss_pred             CCCC
Q psy7040         404 KGGP  407 (716)
Q Consensus       404 ~~g~  407 (716)
                      ..|.
T Consensus        79 ~~g~   82 (83)
T smart00060       79 GAGE   82 (83)
T ss_pred             ccCC
Confidence            7553

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.85  E-value=3.8e-05  Score=59.18  Aligned_cols=54  Identities=17%  Similarity=0.104  Sum_probs=40.7

Q ss_pred             eccCcee----eEEEEeCCeEeeec----ccceeeEEEEccCC-CCCcEEEEEEEEcCCCCce
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID----NVDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQ  691 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~----~~~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~  691 (716)
                      |.|.+.|    .+.|++++..+...    .......|.|.++. ..|.|.|+|.|.|..|...
T Consensus        24 l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          24 LNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             EEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            5666665    89999999988432    11122578898887 5899999999999999754

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=97.82  E-value=6.6e-05  Score=56.84  Aligned_cols=56  Identities=23%  Similarity=0.252  Sum_probs=42.9

Q ss_pred             eEEEEeCCeEeeec------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         645 ESQYLMNDKRVTID------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       645 ~~~W~~~~~~~~~~------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      .+.|...++.+...            .......|.|.++...|+|.|+|.|.|..|....+..|.|.+
T Consensus        19 ~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~~   86 (86)
T cd05862          19 DFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVHE   86 (86)
T ss_pred             EEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccEEEEEeC
Confidence            66898766533111            012346899999999999999999999999888888888864

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.81  E-value=0.00028  Score=53.99  Aligned_cols=77  Identities=16%  Similarity=0.228  Sum_probs=54.0

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCe--E----eccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEE-cCCCc
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T----IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK-NSWGT  507 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~----~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~-n~~g~  507 (716)
                      .+...+|..+.|.|.. ..|.+.+.|++...  .    +....++...    ...|.|.++.+.|+|.|.|.|. |..+.
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~   79 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQ   79 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence            3567789999999996 47888999998432  1    1112333322    2369999999999999999998 56665


Q ss_pred             eeeEEEEEE
Q psy7040         508 DKGTAKVTV  516 (716)
Q Consensus       508 ~~~s~~~~v  516 (716)
                      ......+.|
T Consensus        80 ~~~~~~l~v   88 (91)
T cd05871          80 TLAKYTLHV   88 (91)
T ss_pred             EEEEEEEEE
Confidence            555555544

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.80  E-value=9.7e-05  Score=55.45  Aligned_cols=65  Identities=12%  Similarity=0.062  Sum_probs=52.3

Q ss_pred             EEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         436 IKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      ..+.+|+.+.|.|... +.+...+.|++++..+..        ......|.|.++.+.|+|.|+|.|.+..|..
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~--------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY--------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc--------cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            3588999999999984 456678999999876531        1234589999999999999999999998854

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.77  E-value=0.00014  Score=51.60  Aligned_cols=61  Identities=26%  Similarity=0.382  Sum_probs=46.6

Q ss_pred             CCeEEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEEeCCCeE--EEEECCCCCCCceeEEEEE
Q psy7040         441 GSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFDSKRGDSGIYTLAV  501 (716)
Q Consensus       441 g~~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~l~i~~l~~~~~~~y~~~a  501 (716)
                      |+.+.|.|.+ ...+...+.|.+++..................  .|.|.++.++|.|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6778999999 88888899999998776544443333332221  3999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=97.76  E-value=0.00018  Score=54.48  Aligned_cols=76  Identities=16%  Similarity=0.114  Sum_probs=54.3

Q ss_pred             CCeEEEEEEEeccCC--CeEEEEeCCeEecc---CCc--EE-EEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         441 GSNFEFDINVIGEPI--PTKEWLCNDITIIS---KDR--FK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       441 g~~~~~~~~v~~~p~--~~~~W~~~~~~~~~---~~~--~~-~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      |+.+.+.|.+.+.+.  ..+.|..++.....   ...  .. .........|.|.++...|.|.|+|.|.|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            567899999987654  47799887754311   111  00 01122356899999999999999999999999888777


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+.|
T Consensus        81 ~~~V   84 (86)
T cd05862          81 IVIV   84 (86)
T ss_pred             EEEE
Confidence            7765

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=97.75  E-value=0.013  Score=54.50  Aligned_cols=246  Identities=14%  Similarity=0.079  Sum_probs=130.8

Q ss_pred             CCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc-CcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccce
Q psy7040         237 AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS  315 (716)
Q Consensus       237 ~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~  315 (716)
                      ...+.+-|++-.+   .++..|.|+....+.. +.+.... ++-.-.+.-.+|..+..|.+.+.+.+..+.-..+  + .
T Consensus        83 ~~~~~~~w~~~~d---~~~~~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs--f-~  155 (343)
T COG3401          83 PKSVKVFWSPHPD---VSVGKYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS--F-T  155 (343)
T ss_pred             cceeeecccccCC---CCCCeEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceee--e-e
Confidence            4458999995222   2578999998766544 4333322 1122345556899999999999998865533222  1 1


Q ss_pred             EEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeE
Q psy7040         316 IEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY  395 (716)
Q Consensus       316 ~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y  395 (716)
                      .....+...|..-.++++.....+.+.|+|..+...     ..|+|+....+.........  ...+.+.......|..|
T Consensus       156 gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~-----~yy~IY~~~~g~e~~~~ia~--t~~n~y~d~~eglga~~  228 (343)
T COG3401         156 GVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE-----DYYRIYASDSGNEEYGFIAQ--TTENSYYDVKEGLGAVE  228 (343)
T ss_pred             eeecccccCCceeeeeeeecCCCCcceeeccCcccc-----ceEEEeccCCccccccceee--ccccchhhhhhccCcee
Confidence            222233345555556666667788899999985543     27888877665433332222  23344443334448889


Q ss_pred             EEEEEEEeCCC-CCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEE---EEEEeccCCCeE-EEEeCCeEeccC
Q psy7040         396 EFRVLAVNKGG-PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEF---DINVIGEPIPTK-EWLCNDITIISK  470 (716)
Q Consensus       396 ~~~v~a~n~~g-~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~---~~~v~~~p~~~~-~W~~~~~~~~~~  470 (716)
                      .|.|.++...| .+..+.....-........|.+.           +.....   .+.+.+.+.... .+.-........
T Consensus       229 ~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~-----------g~t~~~s~i~V~~E~~~~~~av~ytvyr~~~g~~  297 (343)
T COG3401         229 YYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIP-----------GETTEASFIGVAAEQNQLRQAVTYTVYRVEDGTP  297 (343)
T ss_pred             EEEEEEEcCCcceeccCCccccccccCCcccccCC-----------CceeeeeeeeEEecccccceeeEEeeeeccCCCc
Confidence            99999998554 34333322222222222233322           111111   133333332321 111111000000


Q ss_pred             CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         471 DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       471 ~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      .++.   .-.........+.....+.|.+.+.+..|..+.
T Consensus       298 ~~~f---~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~~  334 (343)
T COG3401         298 TKFF---TITETDGQDNDMLTGVEYRYEVVAVDKAGLSSH  334 (343)
T ss_pred             ceee---eeeeccccchhhccccceeEEEEEecccccccC
Confidence            0111   011234556677788889999999988876543

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.74  E-value=0.0008  Score=51.44  Aligned_cols=72  Identities=17%  Similarity=0.221  Sum_probs=56.6

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEe--------ccCCcEEEEe-CCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      .++.+.+|+.+.|.|.+.......+.|++.+..+        ..++++.... .+...+|.|.+++..|.|.|.|++...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            4678999999999999988776677887665332        2456666655 456778999999999999999999764


Q ss_pred             C
Q psy7040         505 W  505 (716)
Q Consensus       505 ~  505 (716)
                      .
T Consensus        85 p   85 (95)
T cd05881          85 P   85 (95)
T ss_pred             c
Confidence            3

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.72  E-value=0.0001  Score=56.67  Aligned_cols=59  Identities=19%  Similarity=0.262  Sum_probs=44.2

Q ss_pred             eccCcee-----eEEEEeCCeEeeec------------ccceeeEEEEccCCCCC-cEEEEEEEEcCCCCceeeEEE
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTID------------NVDYFTKITIRPLQRSD-TAQYTVTATNSQGKDQVFIEV  696 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~------------~~~~~~~~~i~~l~~~~-~y~y~~~a~n~~G~~~~s~~l  696 (716)
                      |.|.+.+     .+.|...+..+...            ..+....|.|.++...| .|.|.|.|.|..|.+.....|
T Consensus        21 L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          21 VKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence            5566544     67888776655432            12345789999998766 899999999999999887766

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.70  E-value=8e-05  Score=57.13  Aligned_cols=63  Identities=11%  Similarity=0.075  Sum_probs=43.8

Q ss_pred             eccCcee---eEEEEeCCeEeeecc------cceeeEEEEccCCCCCcEEEEEEEEcCCC-CceeeEEEEEec
Q psy7040         638 SLMPISL---ESQYLMNDKRVTIDN------VDYFTKITIRPLQRSDTAQYTVTATNSQG-KDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~~------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G-~~~~s~~l~v~~  700 (716)
                      |.|.+.+   .+.|++++..+....      ......|.|.++.++|+|.|+|.|.|..+ ....+..|.|.+
T Consensus        16 L~C~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~   88 (89)
T cd04979          16 LECSPKSNLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE   88 (89)
T ss_pred             EEEeCCCCCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence            4444444   899999987654431      11124699999999999999999998654 335667777654

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>KOG4367|consensus

Probab=97.70  E-value=5.6e-05  Score=71.06  Aligned_cols=92  Identities=32%  Similarity=0.452  Sum_probs=76.8

Q ss_pred             CCCCCC-ceEE--EEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          55 LDPEGP-LEVS--NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        55 ~~p~~~-l~~~--~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      ..|..| +++.  ....++++|.|+.|. ..+.++++|.++..+.+++.+.++..+.++.+++.||--++.|.-||.|.|
T Consensus       436 ~vpatpilq~~ec~t~nns~t~~wkqp~-~~~~~~dg~~leld~g~~g~frevy~g~etmctvdglhfns~y~arvka~n  514 (699)
T KOG4367|consen  436 PVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFN  514 (699)
T ss_pred             CCCCCceeehhhhhccCCceEEEeecCC-CCCCCCcceEEEeecCCCCceeEEEecCceeEEecceecchhHHHHHHHhh
Confidence            345555 3333  446679999999665 466789999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCccccceEEe
Q psy7040         132 KEGESEPLETFSSIIA  147 (716)
Q Consensus       132 ~~g~~~~s~~~~~~~~  147 (716)
                      ..|.++.|......+.
T Consensus       515 ~tg~s~ys~tl~lqts  530 (699)
T KOG4367|consen  515 KTGVSPYSKTLVLQTS  530 (699)
T ss_pred             ccCCCcccceeEeeec
Confidence            9999998877655543

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.69  E-value=0.00013  Score=53.31  Aligned_cols=53  Identities=9%  Similarity=-0.050  Sum_probs=42.7

Q ss_pred             eccCcee-----eEEEEeCCeEeeecc----c----ceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDN----V----DYFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~----~----~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      |.|...+     +++|+++++++....    .    .....|.+.-...+|.+.|+|.|.|.++..
T Consensus         4 L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           4 LTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            6777776     999999999986541    1    222579999999999999999999998875

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.69  E-value=7.8e-05  Score=55.97  Aligned_cols=44  Identities=14%  Similarity=0.157  Sum_probs=37.0

Q ss_pred             eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      .+.|+++|..+...  .....|.|..+...|+|.|+|.|.|..|+.
T Consensus        31 ~~~w~k~g~~~~~~--~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753          31 KVTYYRDGKAKKYS--HSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             EEEEEECCeEcccc--CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            78999999876432  234689999999999999999999999865

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=97.64  E-value=0.057  Score=50.67  Aligned_cols=223  Identities=14%  Similarity=0.129  Sum_probs=118.5

Q ss_pred             eCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE--EE------------EEEEEEeCCCCCCCCceeeEEEE-E
Q psy7040         477 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT--VL------------GCSLKWNPPEDDGGAPIEYYMVE-K  541 (716)
Q Consensus       477 ~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~--v~------------~v~l~W~~p~~~~~~~i~~y~v~-~  541 (716)
                      -.+....++|.+|.|++.|.+.|.|.|.....+......  .+            .-.+.|-.-...+|..+..|.+- .
T Consensus        10 Cvg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~   89 (300)
T PF10179_consen   10 CVGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKR   89 (300)
T ss_pred             EcCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcC
Confidence            344566889999999999999999999754333221111  11            11112211111111111111111 0


Q ss_pred             EecCC----------CceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee--------
Q psy7040         542 METDT----------GKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV--------  603 (716)
Q Consensus       542 ~~~~~----------~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~--------  603 (716)
                      .....          +...+.-+..+...........-..+.+.++.+|..|.+++.+.|... +.....+.        
T Consensus        90 ~~~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aast~~~~  168 (300)
T PF10179_consen   90 SSTHQSLWLFVQSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAASTNPSK  168 (300)
T ss_pred             CCCCccEEEEEEeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEecCCccc
Confidence            00000          112233334444444333445568899999999999999998876433 22222221        


Q ss_pred             --ccCCCCCCccceeec--c--ceeEEEEE----Ee-eEEEEeeeeccC------------cee-----eEEEE----eC
Q psy7040         604 --VTDKPSAPEGPIQWL--L--TLTDVTWE----IS-NYLQELHSSLMP------------ISL-----ESQYL----MN  651 (716)
Q Consensus       604 --v~~~p~~~~~~~~~~--~--~~v~l~w~----i~-~y~v~~~~~~~~------------~~~-----~~~W~----~~  651 (716)
                        +|..|..+. +...+  .  ++++|.|.    -. .|=|..+.+.-.            |.|     ...|.    +.
T Consensus       169 ~~~P~LP~d~~-Ik~f~~lrtC~SvTIAW~~s~d~~~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~  247 (300)
T PF10179_consen  169 QPYPQLPDDTS-IKEFNKLRTCNSVTIAWLGSPDRSIKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFH  247 (300)
T ss_pred             CCCCCCCCCCc-eeEEcCCcccceEEEEEecCCCCCceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEc
Confidence              366666666 65554  3  69999999    11 455544432211            111     11111    00


Q ss_pred             CeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         652 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       652 ~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      ...-..........-+|.+|.|+..|-+-+.|.-..|..-.-..+.|.+.
T Consensus       248 ~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkTr  297 (300)
T PF10179_consen  248 SPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSLPYRSKWVKTR  297 (300)
T ss_pred             CCccccccccccceeecccCCCCcEEEEEEEEecCCCceeecceEEEEec
Confidence            00000001111245689999999999999999887887766666777654

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.64  E-value=0.00018  Score=54.95  Aligned_cols=47  Identities=19%  Similarity=0.173  Sum_probs=38.2

Q ss_pred             eEEEEeCCeEeeeccc-----ceeeEEEEccCCCCCcEEEEEEEEcCCCCce
Q psy7040         645 ESQYLMNDKRVTIDNV-----DYFTKITIRPLQRSDTAQYTVTATNSQGKDQ  691 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~~-----~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~  691 (716)
                      .+.|+|+++++.....     .....|.|.++.++|+|.|+|.|.|..|...
T Consensus        31 ~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897          31 ELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             cEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            7999999998764311     1235799999999999999999999987764

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.60  E-value=0.00038  Score=53.15  Aligned_cols=72  Identities=15%  Similarity=0.125  Sum_probs=51.6

Q ss_pred             EEecCCeEEEEEEE-e----ccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040         437 KVRAGSNFEFDINV-I----GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       437 ~~~~g~~~~~~~~v-~----~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~  509 (716)
                      .+..+....+.|.- .    ..+.+.+.|+|++..+........... +...|.|.++.++|.|.|+|.|.+..|...
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-CCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            45567777888852 2    235668999999998764443222212 244799999999999999999999876553

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>KOG3632|consensus

Probab=97.59  E-value=0.00046  Score=72.36  Aligned_cols=262  Identities=16%  Similarity=0.161  Sum_probs=152.1

Q ss_pred             ceEEEEeCCeEEEEecCCCCCCC-CccceEEEEEEcCCCCcEEEecccCCCeEEecCCC-CCcEEEEEEEEEecCccCCC
Q psy7040          61 LEVSNIHKDGCTLKWNKPKDDGG-EPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLT-PGHEYKFRVKALNKEGESEP  138 (716)
Q Consensus        61 l~~~~~~~~s~~l~W~~p~~~~~-~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~-~~~~y~~~v~a~~~~g~~~~  138 (716)
                      +.+......++.|-|++|....+ .++..|.+....   +.......+..+...+..|. .+..|.+.|.+....|.+..
T Consensus       584 ~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~---elrq~l~~gs~tka~~E~ld~~a~s~~isvq~ltSrGsqd~  660 (1335)
T KOG3632|consen  584 GAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLM---ELRQTLYAGSLTKAMQESLDNSAHSGYISVQRLTSRGSQDQ  660 (1335)
T ss_pred             hhhhhhhccceeeeccCCCCCCccccceeeeeecch---hhhhhcccccchHHHHhhccccCCceeeehhhhhccCCCCc
Confidence            44456678899999999765433 456666553321   11111222222333444443 34567777777777775544


Q ss_pred             ccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEE
Q psy7040         139 LETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVI  218 (716)
Q Consensus       139 s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~  218 (716)
                      ......+-                                                                        
T Consensus       661 lrc~Llvg------------------------------------------------------------------------  668 (1335)
T KOG3632|consen  661 LRCILLVG------------------------------------------------------------------------  668 (1335)
T ss_pred             ceeeEecc------------------------------------------------------------------------
Confidence            33222111                                                                        


Q ss_pred             EecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEE
Q psy7040         219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRV  298 (716)
Q Consensus       219 v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v  298 (716)
                       ...+..|.+ +++..+...+..++|-+ .+.+.     -.+.+.....     +.........+++.+|.|++.|..+|
T Consensus       669 -g~a~vvpsq-lrv~n~tqtSa~itwvp-~nsn~-----~Hviyln~eE-----~~ps~a~~y~ytf~~lrpgt~y~a~v  735 (1335)
T KOG3632|consen  669 -GAAPVVPSQ-LRVWNATQTSAMITWVP-FNSNF-----LHVIYLNAEE-----PRPSVAEMYNYTFMRLRPGTDYWASV  735 (1335)
T ss_pred             -ccccccchh-hhhhhhhchhhheeeee-cCCCc-----ceeeecCCcc-----CCCchhhhhHHHHhccCCCCccceec
Confidence             134567777 88889999999999995 32221     1122222211     11112335678889999999999999


Q ss_pred             EEEcC-CC-----CCCCCcccceEEec-CCCCCCCCCCCcEEEe-eeCCeEEEEecCCC-----CCCCccceEEEEEEee
Q psy7040         299 RAVNK-QG-----KSEPLTTTASIEAK-NPFNQPGKPGTPEIKD-FDTDFVELAWTPPE-----QNGGSPIVGYIIEKKE  365 (716)
Q Consensus       299 ~a~n~-~g-----~~~~~~~~~~~~~~-~~~~~p~~p~~~~~~~-~~~~~i~l~W~~p~-----~~~~~~i~~y~v~~~~  365 (716)
                      .|.-. .+     ..........+.+. -+..+|.+|.++++.. ..+..+.++|.+|.     ..+|..+++|.++...
T Consensus       736 ea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyadg  815 (1335)
T KOG3632|consen  736 EAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYADG  815 (1335)
T ss_pred             ccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeCC
Confidence            98764 22     11122222222222 2456778888888864 45678999999974     3466678999998762


Q ss_pred             cCCCceEEEeeecCCCCeEEecCCCC-CCeEEEEEEEEeCCCCCCCCCC
Q psy7040         366 KYSPIWEKCAQTEGDTPKGKVLDLIE-GNQYEFRVLAVNKGGPGEPSDP  413 (716)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~~l~~-~~~Y~~~v~a~n~~g~~~~s~~  413 (716)
                         .....+.........+.+..|+. .....+.|+.-...|++.-+.+
T Consensus       816 ---qkv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesvdsip  861 (1335)
T KOG3632|consen  816 ---QKVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESVDSIP  861 (1335)
T ss_pred             ---ceeeeeecccCCceEEEeeeehhhheecceeEEecccCcccccccc
Confidence               22333333344555566666655 3445677777777776654433

>KOG4152|consensus

Probab=97.58  E-value=0.012  Score=57.53  Aligned_cols=126  Identities=23%  Similarity=0.336  Sum_probs=80.9

Q ss_pred             eEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEE
Q psy7040         282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYII  361 (716)
Q Consensus       282 ~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v  361 (716)
                      ...-..|-+|..|+|+|.|.|..|.+.++......+.  ....|.+|..+.+. .+-..+.|.|.+|...+.+.|..|..
T Consensus       648 ~~~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc--~pG~P~apS~~ri~-k~~eGi~l~weppt~p~sg~Iieys~  724 (830)
T KOG4152|consen  648 KPVKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTC--APGKPTAPSGARIK-KTIEGISLVWEPPTKPGSGTIIEYSP  724 (830)
T ss_pred             cccccccccccceeeeeeeeeccCCCchhhheeeeec--cCCCCCCccccccc-ccccceeecccCCCCCCCcceEEeeh
Confidence            3444578999999999999999999988877654443  22566777776665 34456999999998887777888876


Q ss_pred             EEeecC----CC----ceEEEee-------ecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCC
Q psy7040         362 EKKEKY----SP----IWEKCAQ-------TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  410 (716)
Q Consensus       362 ~~~~~~----~~----~~~~~~~-------~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~  410 (716)
                      +..-..    +.    .......       .......--+.+...+-...|++.|.|..|.|+.
T Consensus       725 ylAi~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpa  788 (830)
T KOG4152|consen  725 YLAIITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPA  788 (830)
T ss_pred             hhHhhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcc
Confidence            652111    00    0111100       0111111223344556678899999999997753

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.58  E-value=0.00081  Score=50.54  Aligned_cols=67  Identities=15%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             EEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEE-eCCC----eEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         444 FEFDINVIG-EPIPTKEWLCNDITIISKDRFKIV-NDDK----STKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       444 ~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      ++|.|.+.+ .|.+.+.|++++..+......... ..+.    ...|.+.....++.+.|+|.|.|.......
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~   74 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGK   74 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCc
Confidence            578999976 688899999999887543221111 1111    236777777777889999999997765543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.52  E-value=0.00021  Score=50.43  Aligned_cols=51  Identities=24%  Similarity=0.292  Sum_probs=38.9

Q ss_pred             eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQG  688 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G  688 (716)
                      |.|.+.+    .+.|++++..+...  .......|.|.++...|.|.|+|.|.|..|
T Consensus         7 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        7 LTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             EEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            5555443    79999998876622  112336899999999999999999999876

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.50  E-value=0.00028  Score=52.95  Aligned_cols=50  Identities=12%  Similarity=0.137  Sum_probs=38.2

Q ss_pred             eccCcee---eEEEEeCCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCC
Q psy7040         638 SLMPISL---ESQYLMNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQ  687 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~  687 (716)
                      |.|.+.+   .+.|+++|..+..+.   ......|.|.++...|+|.|+|.|.+..
T Consensus        16 L~C~~~~~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          16 LKCSPKSNLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             EEEECCCCCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            4454443   899999999886541   1122579999999999999999999964

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.43  E-value=0.00067  Score=49.68  Aligned_cols=65  Identities=11%  Similarity=0.088  Sum_probs=47.5

Q ss_pred             EEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEEe--CCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         444 FEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       444 ~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      +.|+|.. .++|++.++|++++.++..........  ......|.+.-...++.+.|+|.|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            4688887 688999999999999986432110000  0023468888889999999999999988764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.40  E-value=0.003  Score=53.31  Aligned_cols=61  Identities=16%  Similarity=0.119  Sum_probs=47.0

Q ss_pred             EEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEEC
Q psy7040         186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKV  246 (716)
Q Consensus       186 ~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~  246 (716)
                      +|+|.+++..|+|.|.|.+.+..|.....+.|.+..+|.....+-......+..+.|.|.+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a   62 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHI   62 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEE
Confidence            6899999999999999999999899999999999877754322111122245678899986

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=97.40  E-value=0.0014  Score=50.25  Aligned_cols=79  Identities=16%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             cEEEecCCeEEEEEEEe-----------ccCCCeEEEEeCCeEeccCCc-----EEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         435 DIKVRAGSNFEFDINVI-----------GEPIPTKEWLCNDITIISKDR-----FKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~-----------~~p~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      .+.+.+|+++.+.|.+-           -.....+.|+|++........     .++...  ...|.|..+..+|+|.|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~--~~~Lwf~Pa~~eDSG~Y~   86 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE--EDSIWFRPAELQDSGLYT   86 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe--CCEEEEEeCChhhCeEEE
Confidence            36788999999999861           111237999999744433221     233332  448999999999999999


Q ss_pred             EEEEcCCCceeeEEEEE
Q psy7040         499 LAVKNSWGTDKGTAKVT  515 (716)
Q Consensus       499 ~~a~n~~g~~~~s~~~~  515 (716)
                      |.+.|.......++.++
T Consensus        87 C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          87 CVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EEECCCCcceEEEEEEE
Confidence            99999887666665544

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=97.38  E-value=0.014  Score=54.30  Aligned_cols=247  Identities=15%  Similarity=0.208  Sum_probs=135.4

Q ss_pred             eCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccC---CCeEEecCCCCCcEEEEEEEEEecCccC-CCcccc
Q psy7040          67 HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR---EPEMDVTGLTPGHEYKFRVKALNKEGES-EPLETF  142 (716)
Q Consensus        67 ~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~---~~~~~i~~L~~~~~y~~~v~a~~~~g~~-~~s~~~  142 (716)
                      .+.++.+-|.+..+   -++..|.|+....+.. +...+...   .-.+.-.+|..+..|.+.+.|.+..+.- .++...
T Consensus        82 ~~~~~~~~w~~~~d---~~~~~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gV  157 (343)
T COG3401          82 RPKSVKVFWSPHPD---VSVGKYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGV  157 (343)
T ss_pred             CcceeeecccccCC---CCCCeEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceeeeeee
Confidence            45569999997542   4588899987755543 44433222   2345566888899999999987765421 111110


Q ss_pred             ceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecC
Q psy7040         143 SSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK  222 (716)
Q Consensus       143 ~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~  222 (716)
                      ..+.                                                                         ...
T Consensus       158 E~~~-------------------------------------------------------------------------~~~  164 (343)
T COG3401         158 EATP-------------------------------------------------------------------------KAE  164 (343)
T ss_pred             eccc-------------------------------------------------------------------------ccC
Confidence            0000                                                                         011


Q ss_pred             CCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEc
Q psy7040         223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVN  302 (716)
Q Consensus       223 p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n  302 (716)
                      |..-.+ +++....++.+.|+|+.+..     ...|.|+..+............  .++.+...-...|..|.|.|.++.
T Consensus       165 P~ei~~-~~~~~d~~~~i~ls~dg~~~-----~~yy~IY~~~~g~e~~~~ia~t--~~n~y~d~~eglga~~~y~VTtVd  236 (343)
T COG3401         165 PKEITN-VRVSFDLGNNIELSEDGSEA-----EDYYRIYASDSGNEEYGFIAQT--TENSYYDVKEGLGAVEYYKVTTVD  236 (343)
T ss_pred             Cceeee-eeeecCCCCcceeeccCccc-----cceEEEeccCCccccccceeec--cccchhhhhhccCceeEEEEEEEc
Confidence            111112 44555667889999996543     3378888766655544444432  245555444555899999999998


Q ss_pred             CCCCCCC-CcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCC
Q psy7040         303 KQGKSEP-LTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT  381 (716)
Q Consensus       303 ~~g~~~~-~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~  381 (716)
                      ..|.... +.....-........|..|.+..    ....+.|.|+.-...   ....|.++.-..+..  ..  ......
T Consensus       237 ~~~~es~lp~~~t~~~~~g~~e~pt~~g~t~----~~s~i~V~~E~~~~~---~av~ytvyr~~~g~~--~~--~f~it~  305 (343)
T COG3401         237 NTGFESDLPNEPTVGETGGRYEVPTIPGETT----EASFIGVAAEQNQLR---QAVTYTVYRVEDGTP--TK--FFTITE  305 (343)
T ss_pred             CCcceeccCCccccccccCCcccccCCCcee----eeeeeeEEecccccc---eeeEEeeeeccCCCc--ce--eeeeee
Confidence            6664322 22211111111112223333222    223445667652111   234455544333211  11  112344


Q ss_pred             CeEEecCCCCCCeEEEEEEEEeCCCCCC
Q psy7040         382 PKGKVLDLIEGNQYEFRVLAVNKGGPGE  409 (716)
Q Consensus       382 ~~~~i~~l~~~~~Y~~~v~a~n~~g~~~  409 (716)
                      ..+....+..+..|.|.|.+.+..|.+.
T Consensus       306 ~d~~d~~~ltg~~~~y~v~~v~~~gls~  333 (343)
T COG3401         306 TDGQDNDMLTGVEYRYEVVAVDKAGLSS  333 (343)
T ss_pred             ccccchhhccccceeEEEEEeccccccc
Confidence            5566777888999999999999988654

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.38  E-value=0.00065  Score=52.34  Aligned_cols=59  Identities=17%  Similarity=0.075  Sum_probs=39.2

Q ss_pred             eccCcee----eEEEEeCCeEee--------ec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVT--------ID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  697 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~--------~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~  697 (716)
                      |+|.+.+    .+.|++++..+.        .+       .......|.|.++...|+|.|+|.|... -...+.+.|.
T Consensus        17 L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~-~~~~~~~~~~   94 (95)
T cd05882          17 LKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM-PVRTAKATVT   94 (95)
T ss_pred             EEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-ccccEEEEEE
Confidence            5555555    889988765321        01       1112368999999999999999999993 2344455554

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.34  E-value=0.002  Score=47.95  Aligned_cols=64  Identities=16%  Similarity=0.324  Sum_probs=52.9

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      ..+.+..|+.+.|.|..... .+.+.|++++..+..+.++.....    .+.|..+.+.|.|.|.|.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEe
Confidence            45788999999999998775 559999999998876655554444    37899999999999999987

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.24  E-value=0.0027  Score=50.92  Aligned_cols=73  Identities=25%  Similarity=0.309  Sum_probs=55.4

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEe--------------ccCCcEEEEeC--CCeEEEEECCCCCCCceeE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------------ISKDRFKIVND--DKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~--------------~~~~~~~~~~~--~~~~~l~i~~l~~~~~~~y  497 (716)
                      ..+.+..|..+.|.|.+...+...+.|++....-              ....++.+...  .....|.|.+++++|.|.|
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y   85 (109)
T cd04983           6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY   85 (109)
T ss_pred             CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence            3578999999999999988788899999753210              12344444433  3678999999999999999


Q ss_pred             EEEEEcCCC
Q psy7040         498 TLAVKNSWG  506 (716)
Q Consensus       498 ~~~a~n~~g  506 (716)
                      .|.+.+..+
T Consensus        86 ~C~~~~~~~   94 (109)
T cd04983          86 FCALSESGG   94 (109)
T ss_pred             EEEEecCCC
Confidence            999987543

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.24  E-value=0.0026  Score=53.64  Aligned_cols=110  Identities=15%  Similarity=0.266  Sum_probs=63.0

Q ss_pred             EEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCcc---ceeeccceeEEEEEEeeEEEEeeeeccCceeeEE
Q psy7040         571 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG---PIQWLLTLTDVTWEISNYLQELHSSLMPISLESQ  647 (716)
Q Consensus       571 ~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~---~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~  647 (716)
                      ++.|.+++..+.+.|.|.+.+..|.......+.|..+|.....   +....+..+.|.+.+.|+.-        ..-.+.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P--------~~~~i~   73 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYP--------LDVQVE   73 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCC--------CCeEEE
Confidence            5789999999999999999998777666666667666643211   11112334444443333210        001689


Q ss_pred             EEeCCeEeee------c----------cccee--eEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040         648 YLMNDKRVTI------D----------NVDYF--TKITIRPLQRSDTAQYTVTATNSQG  688 (716)
Q Consensus       648 W~~~~~~~~~------~----------~~~~~--~~~~i~~l~~~~~y~y~~~a~n~~G  688 (716)
                      |+++|.....      .          ...++  ..|.+..-..++...|+|.+.+..-
T Consensus        74 W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          74 WTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             EEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            9998753110      0          01111  3455543333445689999887543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.18  E-value=0.0011  Score=51.22  Aligned_cols=34  Identities=26%  Similarity=0.216  Sum_probs=28.2

Q ss_pred             eEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         664 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      .+|.|.++.++|+|.|.|.+.+..+. ..++.|.|
T Consensus        62 ~sL~I~~v~~~DsG~Y~C~~~t~~~~-~~~~~l~v   95 (95)
T cd07701          62 LSISISDVSLSDEGQYTCSLFTMPVK-TSKAYLTV   95 (95)
T ss_pred             EEEEECcCCcccCEEEEEEeEeecCc-cEEEEEEC
Confidence            68999999999999999999995444 66666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.18  E-value=0.00065  Score=50.90  Aligned_cols=56  Identities=20%  Similarity=0.299  Sum_probs=40.2

Q ss_pred             eccCcee----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCC-ceeeEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK-DQVFIEVV  697 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~-~~~s~~l~  697 (716)
                      |.|.+.+    .+.|++++..+....    ..+.|..+..++.|.|+|.|.|..|. .+.+..|.
T Consensus        19 l~C~~~~~p~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~   79 (80)
T PF13895_consen   19 LTCSVSGNPPPQVQWYKNGSPINSSQ----NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT   79 (80)
T ss_dssp             EEEEEESSSSSEEEEEETTEEEEEES----SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEcccceeeeeeeeeeeeeeee----eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence            4555444    899999998887541    22778899999999999999996652 23444443

...

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.12  E-value=0.00055  Score=48.55  Aligned_cols=46  Identities=15%  Similarity=0.204  Sum_probs=33.1

Q ss_pred             eccCc-ee----eEEEEeCCeEeeeccccee--------eEEEEccCCCCCcEEEEEEE
Q psy7040         638 SLMPI-SL----ESQYLMNDKRVTIDNVDYF--------TKITIRPLQRSDTAQYTVTA  683 (716)
Q Consensus       638 ~~~~~-~~----~~~W~~~~~~~~~~~~~~~--------~~~~i~~l~~~~~y~y~~~a  683 (716)
                      |.|.+ .+    .+.|++++..+........        ..|.|.++.++|+|.|+|.|
T Consensus         6 L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    6 LTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             EEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            66666 22    9999998765544411111        23999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.07  E-value=0.0019  Score=49.56  Aligned_cols=65  Identities=15%  Similarity=0.068  Sum_probs=49.9

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      ..+..|+.+.|.|... .+...+.|++++......   ..........+.|.++.+.+.|.|+|...+.
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            4578999999999764 667789999988753211   1122345668999999999999999999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=97.04  E-value=0.0049  Score=48.94  Aligned_cols=80  Identities=24%  Similarity=0.327  Sum_probs=58.1

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEe---cccCCCeEEecCCC--CCcEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV---GKTREPEMDVTGLT--PGHEYKFRVK  128 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~---~~~~~~~~~i~~L~--~~~~y~~~v~  128 (716)
                      .+++|.++++... .-...|+|+++...  .+-..|.|+|+..+.+.|..+   .....+.+.|++..  +...|.+||+
T Consensus        21 ~lp~P~nv~~~s~-nf~~iL~W~~~~~~--~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~   97 (107)
T PF01108_consen   21 SLPAPQNVTVDSV-NFKHILRWDPGPGS--PPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVR   97 (107)
T ss_dssp             SGSSCEEEEEEEE-TTEEEEEEEESTTS--SSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEE
T ss_pred             cCCCCCeeEEEEE-CCceEEEeCCCCCC--CCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEE
Confidence            3445555555555 44689999985422  347789999997778889876   44556889998855  7889999999


Q ss_pred             EEecCccC
Q psy7040         129 ALNKEGES  136 (716)
Q Consensus       129 a~~~~g~~  136 (716)
                      |..+...|
T Consensus        98 A~~~~~~S  105 (107)
T PF01108_consen   98 AEVGNQTS  105 (107)
T ss_dssp             EEETTEEE
T ss_pred             EEeCCccC
Confidence            98766544

...

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.04  E-value=0.00088  Score=49.36  Aligned_cols=57  Identities=19%  Similarity=0.344  Sum_probs=40.5

Q ss_pred             EEEEEEEeccC-CCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         444 FEFDINVIGEP-IPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       444 ~~~~~~v~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +.|.|.+.+.+ .+.+.|+ .....  ..............|.|.++...+.|.|+|.|.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~-~~~~~--~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY-DSNPS--FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE-TEEEE--EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE-ecCCc--eeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            89999998888 8899999 11111  0111112222356899999999999999999987

...

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.03  E-value=0.00082  Score=51.26  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=39.3

Q ss_pred             eccCcee-----eEEEEeCCeEeee--c----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTI--D----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~--~----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      |.|....     .+.|++++..+..  +    .......|.|.++...|+|.|.|.|.|.....
T Consensus        23 L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          23 LFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             EeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            5564443     8999999875421  1    12234789999999999999999999987655

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.03  E-value=0.0078  Score=47.87  Aligned_cols=77  Identities=21%  Similarity=0.271  Sum_probs=51.6

Q ss_pred             CCeEEEEEEEeccC------------CCeEEEEeCCe--E---e---------cc--CCcEEEEe---CCCeEEEEECCC
Q psy7040         441 GSNFEFDINVIGEP------------IPTKEWLCNDI--T---I---------IS--KDRFKIVN---DDKSTKLKVFDS  489 (716)
Q Consensus       441 g~~~~~~~~v~~~p------------~~~~~W~~~~~--~---~---------~~--~~~~~~~~---~~~~~~l~i~~l  489 (716)
                      |+.+.|.|......            .+.+.|++...  .   +         ..  ..++.+..   .....+|.|.++
T Consensus         2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl   81 (112)
T cd05900           2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL   81 (112)
T ss_pred             CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence            66778888775432            35788887421  0   0         00  12333332   336789999999


Q ss_pred             CCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         490 KRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       490 ~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      +..|.|.|+|.+.+..........+.+.
T Consensus        82 ~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          82 RSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             ccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            9999999999999877777777666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.02  E-value=0.011  Score=47.03  Aligned_cols=77  Identities=22%  Similarity=0.322  Sum_probs=53.1

Q ss_pred             CCeEEEEEEEeccC------CCeEEEEeCC---e-E--e--ccC--------CcEEEE---eCCCeEEEEECCCCCCCce
Q psy7040         441 GSNFEFDINVIGEP------IPTKEWLCND---I-T--I--ISK--------DRFKIV---NDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       441 g~~~~~~~~v~~~p------~~~~~W~~~~---~-~--~--~~~--------~~~~~~---~~~~~~~l~i~~l~~~~~~  495 (716)
                      |+.+.|.|.....+      ...+.|++..   . .  +  ...        .+.++.   ......+|.|.+++..|.|
T Consensus         2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G   81 (106)
T cd05714           2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG   81 (106)
T ss_pred             CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence            67788999887653      4578999862   1 0  0  011        111111   1235789999999999999


Q ss_pred             eEEEEEEcCCCceeeEEEEEEE
Q psy7040         496 IYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       496 ~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .|.|.+.+..+.....+.+.|.
T Consensus        82 ~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          82 RYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             EEEEEEEcCCCceEEEEEEEEE
Confidence            9999999987777777776664

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.01  E-value=0.0039  Score=49.64  Aligned_cols=70  Identities=24%  Similarity=0.253  Sum_probs=51.9

Q ss_pred             EEecCCeEEEEEEEecc-CCCeEEEEeCCeE-----e------------ccCCcEEEEeCC--CeEEEEECCCCCCCcee
Q psy7040         437 KVRAGSNFEFDINVIGE-PIPTKEWLCNDIT-----I------------ISKDRFKIVNDD--KSTKLKVFDSKRGDSGI  496 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~~-----~------------~~~~~~~~~~~~--~~~~l~i~~l~~~~~~~  496 (716)
                      .+..|+.+.|.|.+... +...+.|++....     +            ....++.+....  ...+|.|.+++.+|.|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999876 6778999985431     0            012334443333  56799999999999999


Q ss_pred             EEEEEEcCCC
Q psy7040         497 YTLAVKNSWG  506 (716)
Q Consensus       497 y~~~a~n~~g  506 (716)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.00  E-value=0.0028  Score=47.62  Aligned_cols=60  Identities=12%  Similarity=0.048  Sum_probs=40.8

Q ss_pred             eccCcee-----eEEEEeCCeEeeecc------c-c----eeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDN------V-D----YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  697 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~------~-~----~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~  697 (716)
                      |.|.+.|     .+.|+++|+.+....      . +    ....|.|.....++.+.|+|.|.|..........++
T Consensus         4 L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~   79 (82)
T cd05759           4 LTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT   79 (82)
T ss_pred             EEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence            5555554     889999998765431      1 1    124677777777888999999999876664444443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.00  E-value=0.0052  Score=49.30  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=52.5

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeE--ec----------------cCCcEEEEeCC-CeEEEEECCCCCCCc
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT--II----------------SKDRFKIVNDD-KSTKLKVFDSKRGDS  494 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~--~~----------------~~~~~~~~~~~-~~~~l~i~~l~~~~~  494 (716)
                      ..+.+.+|+.+.|.|.+.+ +...+.|++....  ..                ...++.+.... ....|.|.+++++|+
T Consensus         6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds   84 (110)
T cd05899           6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS   84 (110)
T ss_pred             CceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence            4578999999999999987 6778999986421  00                12334433332 567899999999999


Q ss_pred             eeEEEEEEcCC
Q psy7040         495 GIYTLAVKNSW  505 (716)
Q Consensus       495 ~~y~~~a~n~~  505 (716)
                      |.|.|.+.+..
T Consensus        85 g~Y~Ca~~~~~   95 (110)
T cd05899          85 AVYLCASSLGG   95 (110)
T ss_pred             EEEEEEeeCCC
Confidence            99999997653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=96.95  E-value=0.0037  Score=47.79  Aligned_cols=56  Identities=21%  Similarity=0.392  Sum_probs=43.9

Q ss_pred             eEEEEeCCeEeeec-----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         645 ESQYLMNDKRVTID-----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       645 ~~~W~~~~~~~~~~-----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      .+.|.+++..+...           ...+...|.+..|+..++|.|+|.|.|+.+..+.++.|.|.+
T Consensus        35 ~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~~  101 (101)
T cd05860          35 HQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVNT  101 (101)
T ss_pred             eeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEeC
Confidence            47888776543322           112447899999999999999999999999999999888763

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=96.95  E-value=0.0023  Score=49.09  Aligned_cols=54  Identities=19%  Similarity=0.099  Sum_probs=40.8

Q ss_pred             eEEEEeCCeEeeecc---------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         645 ESQYLMNDKRVTIDN---------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~---------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      .+.|+|++..+....         ......|.|..+..+|+|.|.|.+.|.-.-.+.+..|+|
T Consensus        42 ~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          42 SLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             eEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence            689999864443321         122378999999999999999999998877777766654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=96.93  E-value=0.0021  Score=47.81  Aligned_cols=61  Identities=10%  Similarity=0.083  Sum_probs=44.6

Q ss_pred             eccCcee---eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL---ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|...+   .+.|+++|..+..+  ......-+.|..+.+.|+|.|.|.|. +.|.....+++.+.
T Consensus        16 L~C~~~s~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~l~   81 (85)
T cd05872          16 LPCQLRSNLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQQLVASYSLN   81 (85)
T ss_pred             EECCCCCCCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCeEEEEEEEEE
Confidence            6677666   99999999987653  12222558899999999999999987 67776555444443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=96.91  E-value=0.0025  Score=48.71  Aligned_cols=37  Identities=32%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             eEEEEccCCCCCcEEEEEEEE-cCCCCceeeEEEEEec
Q psy7040         664 TKITIRPLQRSDTAQYTVTAT-NSQGKDQVFIEVVVTD  700 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~-n~~G~~~~s~~l~v~~  700 (716)
                      ..|.|.++.+.|+|.|.|.|. |..|.......|.|..
T Consensus        53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~~   90 (91)
T cd05871          53 RGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE   90 (91)
T ss_pred             CeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEec
Confidence            579999999999999999998 5777667777777753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=96.90  E-value=0.0023  Score=49.10  Aligned_cols=42  Identities=12%  Similarity=0.199  Sum_probs=32.9

Q ss_pred             eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         645 ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       645 ~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      .+.|+++|......   .......|.|..+.++|+|+|+|.+.|.
T Consensus        31 ~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          31 EYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             EEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            77888887753321   2344578999999999999999999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=96.81  E-value=0.015  Score=46.26  Aligned_cols=77  Identities=17%  Similarity=0.209  Sum_probs=53.1

Q ss_pred             CCeEEEEEEEeccC------CCeEEEEeCCeE-------e-cc----------CCcEEEEe-CCCeEEEEECCCCCCCce
Q psy7040         441 GSNFEFDINVIGEP------IPTKEWLCNDIT-------I-IS----------KDRFKIVN-DDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       441 g~~~~~~~~v~~~p------~~~~~W~~~~~~-------~-~~----------~~~~~~~~-~~~~~~l~i~~l~~~~~~  495 (716)
                      |+.+.|.|.....|      ...+.|++....       + ..          ..++.+.. .....+|.|.+++..|.|
T Consensus         2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG   81 (106)
T cd05877           2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDYG   81 (106)
T ss_pred             CCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHCE
Confidence            67889999887653      356899986411       0 00          12222211 134568999999999999


Q ss_pred             eEEEEEEcCCCceeeEEEEEEE
Q psy7040         496 IYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       496 ~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .|.|.+.+..+.....+.+.|.
T Consensus        82 ~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          82 RYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEecccceEEEEEEEEE
Confidence            9999999988887777766664

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=96.77  E-value=0.03  Score=44.96  Aligned_cols=74  Identities=18%  Similarity=0.239  Sum_probs=50.2

Q ss_pred             cEEEecCCeEEEEEEEecc----CCCeEEEEe---------------CCeEec-cC----CcEEEEe--CCCeEEEEECC
Q psy7040         435 DIKVRAGSNFEFDINVIGE----PIPTKEWLC---------------NDITII-SK----DRFKIVN--DDKSTKLKVFD  488 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~----p~~~~~W~~---------------~~~~~~-~~----~~~~~~~--~~~~~~l~i~~  488 (716)
                      .+.+..|..+.|.|.....    +...++|..               ++.... ..    .++.+..  .....++.|.+
T Consensus         7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n   86 (116)
T cd05879           7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN   86 (116)
T ss_pred             eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence            4678889999999998653    234789933               222221 11    1332222  23567899999


Q ss_pred             CCCCCceeEEEEEEcCCCce
Q psy7040         489 SKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       489 l~~~~~~~y~~~a~n~~g~~  508 (716)
                      ++..|.|.|+|.+.|..+..
T Consensus        87 v~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          87 LDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             CCcccCEEEEEEEEcCCCcC
Confidence            99999999999999876643

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.77  E-value=0.015  Score=45.54  Aligned_cols=74  Identities=12%  Similarity=0.151  Sum_probs=47.9

Q ss_pred             eEEEEEEEeccC---CCeEEEEeCCeE---------------eccCCcEEEEeCC---CeEEEEECCCCCCCceeEEEEE
Q psy7040         443 NFEFDINVIGEP---IPTKEWLCNDIT---------------IISKDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAV  501 (716)
Q Consensus       443 ~~~~~~~v~~~p---~~~~~W~~~~~~---------------~~~~~~~~~~~~~---~~~~l~i~~l~~~~~~~y~~~a  501 (716)
                      .+.|.|.+...+   ...+.|++....               .....+.++...+   ...+|.|.++...|.|.|.|.+
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v   81 (98)
T cd05718           2 SVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICEF   81 (98)
T ss_pred             CEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEEE
Confidence            457888776543   346888885431               0011112222222   4679999999999999999998


Q ss_pred             Ec-CCCceeeEEEEEE
Q psy7040         502 KN-SWGTDKGTAKVTV  516 (716)
Q Consensus       502 ~n-~~g~~~~s~~~~v  516 (716)
                      .+ ..|.......+.|
T Consensus        82 ~~~~~g~~~~~~~l~V   97 (98)
T cd05718          82 ATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EeCCCCcEEEEEEEEe
Confidence            75 5677766666665

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>smart00409 IG Immunoglobulin

Probab=96.71  E-value=0.0067  Score=45.85  Aligned_cols=54  Identities=24%  Similarity=0.305  Sum_probs=41.0

Q ss_pred             eEEEEeC-CeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         645 ESQYLMN-DKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       645 ~~~W~~~-~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      .+.|+++ +..+...      .......|.|.++...|+|.|+|.+.|..|.......|.|
T Consensus        25 ~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00409       25 EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            7899997 6655311      1222468999999999999999999998888766666655

>smart00410 IG_like Immunoglobulin like

Probab=96.71  E-value=0.0067  Score=45.85  Aligned_cols=54  Identities=24%  Similarity=0.305  Sum_probs=41.0

Q ss_pred             eEEEEeC-CeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         645 ESQYLMN-DKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       645 ~~~W~~~-~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      .+.|+++ +..+...      .......|.|.++...|+|.|+|.+.|..|.......|.|
T Consensus        25 ~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00410       25 EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            7899997 6655311      1222468999999999999999999998888766666655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.69  E-value=0.011  Score=46.92  Aligned_cols=71  Identities=13%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             ccEEEecCCeEEEEEEEeccC-CCeEEEEeCCe--E---ec---------cCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDI--T---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p-~~~~~W~~~~~--~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      ..+.+..|+.+.|.|.+.+.. ...+.|++...  .   +.         ...++..........|.|.++.+.|+|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~   87 (106)
T cd04980           8 ATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYY   87 (106)
T ss_pred             CcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEE
Confidence            357789999999999987665 56799987531  1   00         112444444445678999999999999999


Q ss_pred             EEEEcC
Q psy7040         499 LAVKNS  504 (716)
Q Consensus       499 ~~a~n~  504 (716)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (106)
T cd04980          88 CQQYGT   93 (106)
T ss_pred             EEEeCC
Confidence            998754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=96.66  E-value=0.023  Score=44.60  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=31.2

Q ss_pred             CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       480 ~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      ...+|.|.++...|.|.|+|.+.|..+.....+.+.|
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            4578999999999999999999998877666666654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=96.65  E-value=0.014  Score=45.37  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=27.6

Q ss_pred             eEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         664 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      ..|.|.++..+|+|.|.|.+.+... ...+..|+|
T Consensus        62 ~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v   95 (95)
T cd05717          62 LSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV   95 (95)
T ss_pred             eEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence            5799999999999999999998753 455665654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.57  E-value=0.014  Score=47.44  Aligned_cols=70  Identities=17%  Similarity=0.250  Sum_probs=52.4

Q ss_pred             ccEEEecCCeEEEEEEEec--cCCCeEEEEeCCe--Ee-----------------ccCCcEEEEeCC--CeEEEEECCCC
Q psy7040         434 SDIKVRAGSNFEFDINVIG--EPIPTKEWLCNDI--TI-----------------ISKDRFKIVNDD--KSTKLKVFDSK  490 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~--~p~~~~~W~~~~~--~~-----------------~~~~~~~~~~~~--~~~~l~i~~l~  490 (716)
                      ..+.+..|+.+.|.|.+.+  .+...+.|++...  ..                 ....++.+..+.  ....|.|.++.
T Consensus         6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~   85 (116)
T cd04982           6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE   85 (116)
T ss_pred             CeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC
Confidence            3577889999999999987  6777899998521  10                 012345554444  57789999999


Q ss_pred             CCCceeEEEEEEc
Q psy7040         491 RGDSGIYTLAVKN  503 (716)
Q Consensus       491 ~~~~~~y~~~a~n  503 (716)
                      ++|.|.|.|.+..
T Consensus        86 ~~Dsg~Y~C~~~~   98 (116)
T cd04982          86 KEDSATYYCAYWE   98 (116)
T ss_pred             HHHCEEEEEEEec
Confidence            9999999998864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=96.56  E-value=0.0042  Score=47.52  Aligned_cols=27  Identities=15%  Similarity=0.283  Sum_probs=24.6

Q ss_pred             eEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         664 TKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      ..|+|.+|...|+|+|.|.+.|..++.
T Consensus        65 ~~L~I~~l~~sDsgtY~C~v~~~~~~~   91 (94)
T cd07690          65 FPLIIKNLKIEDSDTYICEVEDKKEEV   91 (94)
T ss_pred             EEEEECCCCHHHCEEEEEEECCccceE
Confidence            579999999999999999999988754

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG4367|consensus

Probab=96.47  E-value=0.0034  Score=59.52  Aligned_cols=76  Identities=33%  Similarity=0.450  Sum_probs=64.9

Q ss_pred             EeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCccc
Q psy7040         235 VHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT  313 (716)
Q Consensus       235 ~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~  313 (716)
                      ..+++++|.|+.|.. .+.+..+|.++..+.+++.+.++..  +.++.+++.+|.-++.|.-+|.|.|..|.++.+...
T Consensus       450 t~nns~t~~wkqp~~-~~~~~dg~~leld~g~~g~frevy~--g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl  525 (699)
T KOG4367|consen  450 THNNSATLSWKQPPL-STVPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL  525 (699)
T ss_pred             ccCCceEEEeecCCC-CCCCCcceEEEeecCCCCceeEEEe--cCceeEEecceecchhHHHHHHHhhccCCCccccee
Confidence            467899999997665 4568999999998888888777765  668999999999999999999999999999877664

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=96.42  E-value=0.043  Score=43.79  Aligned_cols=77  Identities=17%  Similarity=0.266  Sum_probs=51.1

Q ss_pred             CCeEEEEEEEeccC----------CCeEEEEeCC--eEec----------cC----CcEEEE---eCCCeEEEEECCCCC
Q psy7040         441 GSNFEFDINVIGEP----------IPTKEWLCND--ITII----------SK----DRFKIV---NDDKSTKLKVFDSKR  491 (716)
Q Consensus       441 g~~~~~~~~v~~~p----------~~~~~W~~~~--~~~~----------~~----~~~~~~---~~~~~~~l~i~~l~~  491 (716)
                      |..+.|.|.....+          ...+.|++..  ....          ..    .++.+.   ......+|.|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            66778888886544          2568888752  1100          01    122221   123567899999999


Q ss_pred             CCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         492 GDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       492 ~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .|.|.|.|.+..........+.+.|.
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            99999999998876666666666654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=96.38  E-value=0.019  Score=44.90  Aligned_cols=67  Identities=15%  Similarity=0.138  Sum_probs=49.5

Q ss_pred             EEecCCeEEEEEEEecc--CCCeEEEEeCCeE--e------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEE
Q psy7040         437 KVRAGSNFEFDINVIGE--PIPTKEWLCNDIT--I------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~--p~~~~~W~~~~~~--~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      .+..|+.+.+.|.....  ....+.|++....  .            ....++.....+....|.|.++++.|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998765  4567899865421  1            012355555566677899999999999999998


Q ss_pred             EEc
Q psy7040         501 VKN  503 (716)
Q Consensus       501 a~n  503 (716)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            865

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=96.35  E-value=0.028  Score=44.16  Aligned_cols=67  Identities=21%  Similarity=0.269  Sum_probs=46.1

Q ss_pred             EEecCCeEEEEEEEeccCCCeEEEEeCCeEe--------cc-----------CCcEEEEeCCCeEEEEECCCCCCCceeE
Q psy7040         437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------IS-----------KDRFKIVNDDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~--------~~-----------~~~~~~~~~~~~~~l~i~~l~~~~~~~y  497 (716)
                      .+..|+.+.|.|.-.-.....+.|+|.....        ..           ..+..+.   .+.+|.|.++...|.|.|
T Consensus         9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~---~ngSL~I~~v~~~D~G~Y   85 (105)
T cd05774           9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY---PNGSLLIQNVTQKDTGFY   85 (105)
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe---CCCcEEEecCCcccCEEE
Confidence            3678999999986544445589999963211        00           1111111   134899999999999999


Q ss_pred             EEEEEcCCC
Q psy7040         498 TLAVKNSWG  506 (716)
Q Consensus       498 ~~~a~n~~g  506 (716)
                      +|.+.+...
T Consensus        86 ~~~v~~~~~   94 (105)
T cd05774          86 TLQTITTNF   94 (105)
T ss_pred             EEEEEeCCc
Confidence            999998874

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=96.34  E-value=0.91  Score=48.31  Aligned_cols=137  Identities=20%  Similarity=0.230  Sum_probs=79.4

Q ss_pred             CCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecC
Q psy7040         268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTP  347 (716)
Q Consensus       268 ~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~  347 (716)
                      .+|.....  .....+.+.+|-+| .|.++|+|.|..|.......+..+.+..+..+|..+..+..... .-.+.|.|-.
T Consensus       649 ~~~vta~r--t~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~i-t~~~~l~v~d  724 (952)
T COG4733         649 GNWITAPR--TSAAGFDVEGIPAG-QYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVII-TLVIRLVVGD  724 (952)
T ss_pred             CceEeccc--ccccceeecCcCcc-ceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEE-EeeeeEEEec
Confidence            35666555  45788999999995 79999999999987655554445555555555544444443322 2357788877


Q ss_pred             CCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCC
Q psy7040         348 PEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  410 (716)
Q Consensus       348 p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~  410 (716)
                      |..  .-.+..-.+++......+......-........-.+|+++..|.|+++++|..|.+.+
T Consensus       725 Pt~--~~d~~~sei~~s~~~d~~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~  785 (952)
T COG4733         725 PTG--AVDITSTEIRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDK  785 (952)
T ss_pred             CCc--ceEEeeeeeeeeccccchhHHhhhhccccccccccCcCCCceEEEEeeeccccccccc
Confidence            541  1112222222222211111000000111122223689999999999999999987643

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.27  E-value=0.045  Score=42.44  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             eEEEEccCCCCCcEEEEEEEEc-CCCCceeeEEEEE
Q psy7040         664 TKITIRPLQRSDTAQYTVTATN-SQGKDQVFIEVVV  698 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n-~~G~~~~s~~l~v  698 (716)
                      .++.|.+|+..|.|.|+|...| ..|..+....|.|
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            7899999999999999999999 6787777777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=96.26  E-value=0.05  Score=43.88  Aligned_cols=74  Identities=16%  Similarity=0.324  Sum_probs=49.2

Q ss_pred             ccEEEecCCeEEEEEEEeccC----CCeEEEEeC----CeE--e---c------cCCcE--EEEe----CCCeEEEEECC
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP----IPTKEWLCN----DIT--I---I------SKDRF--KIVN----DDKSTKLKVFD  488 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p----~~~~~W~~~----~~~--~---~------~~~~~--~~~~----~~~~~~l~i~~  488 (716)
                      ..+.+..|+.+.|.|.....+    ...+.|++.    +..  +   .      ...++  ++..    .....+|.|.+
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~   85 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ   85 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence            457899999999999986543    235899742    111  1   0      11111  1111    23456899999


Q ss_pred             CCCCCceeEEEEEEcCCCc
Q psy7040         489 SKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       489 l~~~~~~~y~~~a~n~~g~  507 (716)
                      +++.|.|.|.|.+.|..+.
T Consensus        86 v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          86 LQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             CChhhCEEEEEEEEeCCCC
Confidence            9999999999999986653

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=96.25  E-value=0.036  Score=43.08  Aligned_cols=69  Identities=17%  Similarity=0.303  Sum_probs=46.1

Q ss_pred             cCCeEEEEEEEec-cCCCeEEEEeCCeEec-------------cCCc--EEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         440 AGSNFEFDINVIG-EPIPTKEWLCNDITII-------------SKDR--FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       440 ~g~~~~~~~~v~~-~p~~~~~W~~~~~~~~-------------~~~~--~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      .|+.+.|.|.+.. .....+.|++......             ....  -++..+....+|.|.+++..|.|.|.|.+.+
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            4677778886644 4455677876532111             0111  1334445568999999999999999999998


Q ss_pred             CCCce
Q psy7040         504 SWGTD  508 (716)
Q Consensus       504 ~~g~~  508 (716)
                      ..|..
T Consensus        83 ~~~~~   87 (97)
T cd05775          83 KNGVT   87 (97)
T ss_pred             CCCCe
Confidence            87654

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=96.05  E-value=0.054  Score=41.68  Aligned_cols=67  Identities=16%  Similarity=0.241  Sum_probs=45.5

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEecc----------------CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIIS----------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~----------------~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      |+.+.|.|.+.......+.|++.......                ...-++.... ..+|.|.++++.|+|.|.|.+...
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~sL~I~~l~~~DsG~Y~c~v~~~   79 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-NGSLLIQNLTKEDSGTYTLQIIST   79 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-CceEEEccCCchhcEEEEEEEEcC
Confidence            56778888877766778889876532110                0011122222 368999999999999999999987


Q ss_pred             CCce
Q psy7040         505 WGTD  508 (716)
Q Consensus       505 ~g~~  508 (716)
                      .|..
T Consensus        80 ~~~~   83 (92)
T cd05741          80 NGVT   83 (92)
T ss_pred             CCcE
Confidence            7543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=96.04  E-value=0.014  Score=46.46  Aligned_cols=72  Identities=18%  Similarity=0.270  Sum_probs=48.5

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCC-----CCC------CccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEE
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKD-----DGG------EPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKF  125 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~-----~~~------~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~  125 (716)
                      ||. +.+ ....++|.|.+.+|..     ..+      .+-..|.|.++..++.............+.|.+|.|++.|-+
T Consensus         5 PP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~YCv   82 (106)
T PF09294_consen    5 PPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNYCV   82 (106)
T ss_dssp             SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEEEE
T ss_pred             CCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCEEE
Confidence            444 555 7788899999998851     111      012459999888777633333444456789999999999999


Q ss_pred             EEEEE
Q psy7040         126 RVKAL  130 (716)
Q Consensus       126 ~v~a~  130 (716)
                      +|+|.
T Consensus        83 ~V~~~   87 (106)
T PF09294_consen   83 SVQAF   87 (106)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99993

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=96.02  E-value=0.013  Score=43.03  Aligned_cols=25  Identities=36%  Similarity=0.496  Sum_probs=22.5

Q ss_pred             ceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040         661 DYFTKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       661 ~~~~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      .....|.|.++..+|.|.|+|.|.|
T Consensus        51 ~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   51 SSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             ceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3448899999999999999999988

...

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.00  E-value=0.019  Score=44.53  Aligned_cols=37  Identities=14%  Similarity=0.270  Sum_probs=32.7

Q ss_pred             CccEEEEeccccCcceEEEEEEEe-CCCCceeEEEEEE
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEVIV  219 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n-~~g~~~~~~~~~v  219 (716)
                      .+.+|.|.+|+..|+|.|+|...| ..|..+..+.|+|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            468999999999999999999999 7887888887776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=95.96  E-value=0.044  Score=40.40  Aligned_cols=62  Identities=10%  Similarity=0.031  Sum_probs=42.6

Q ss_pred             eccCcee-----eEEEEeCCeEeeeccc---------ceeeEEEEccCCCCCcEEEEEEEEcCCCC-ceeeEEEEEe
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDNV---------DYFTKITIRPLQRSDTAQYTVTATNSQGK-DQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~~---------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~-~~~s~~l~v~  699 (716)
                      +.|.+.|     .|+|++++.++.....         .....|.|.--..+|.-.|+|+|.|.+=. ...+..|.|.
T Consensus         4 L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           4 LNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            6677777     9999999988876411         12256777666666777999999997532 2455556654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=95.85  E-value=0.026  Score=44.32  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=31.8

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEE
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV  219 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v  219 (716)
                      ...+|+|.+++..|+|.|+|.+.|..+..+..+.|.|
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            4678999999999999999999998887777676665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=95.80  E-value=0.058  Score=39.76  Aligned_cols=62  Identities=15%  Similarity=0.190  Sum_probs=42.0

Q ss_pred             EEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEEeCC---CeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         444 FEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       444 ~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      +.+.|.+ .++|.+.+.|++++.++...........+   ....|.|..-..+|.-.|+|+|.|..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence            4678887 56788899999999998654321111111   23466666666666778999998865

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=95.80  E-value=0.033  Score=42.93  Aligned_cols=67  Identities=7%  Similarity=-0.058  Sum_probs=46.7

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      ..+..|+.++|.|...- ....+.|++++...................+.|..+.+++.|.|+|....
T Consensus        10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            45789999999996643 55679999988653211000011123455889999999999999999863

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=95.77  E-value=0.094  Score=39.22  Aligned_cols=63  Identities=13%  Similarity=0.208  Sum_probs=40.8

Q ss_pred             EEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCCCe------EEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         444 FEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKS------TKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       444 ~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      +.|.|.+.+ .|.+.+.|++++..+..... .+...+..      ..+.+.....++...|+|.|.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            478899865 58899999999988765432 22222221      23444445556667888888876643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=95.76  E-value=0.021  Score=39.51  Aligned_cols=44  Identities=7%  Similarity=-0.017  Sum_probs=34.5

Q ss_pred             eccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040         638 SLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       638 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      +.|.....+.|++ |..+...   ....+.+..+..+..|.|+|.+.|
T Consensus        11 L~C~~~tsi~W~k-G~~~~~~---~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691          11 LKCNGATNITWKK-GKEILEV---SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             EEecCCCcEEEec-Ccccccc---cccEEeccCcccCCCcceEecCcc
Confidence            6676544899999 6555433   257899999999999999999887

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=95.67  E-value=0.16  Score=40.33  Aligned_cols=38  Identities=21%  Similarity=0.234  Sum_probs=31.1

Q ss_pred             CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       480 ~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      ...+|.|.++.+.|.|.|+|............+.+.|.
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            57899999999999999999999866666666666554

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=95.67  E-value=0.034  Score=43.51  Aligned_cols=37  Identities=27%  Similarity=0.264  Sum_probs=30.9

Q ss_pred             CccEEEEeccccCcceEEEEEEEe-CCCCceeEEEEEE
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEVIV  219 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n-~~g~~~~~~~~~v  219 (716)
                      .+.+|+|.+++..|+|.|.|.+.+ ..|..+..+.|.|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            467899999999999999999998 6676666666665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=95.59  E-value=0.024  Score=45.08  Aligned_cols=39  Identities=18%  Similarity=0.236  Sum_probs=34.3

Q ss_pred             eeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       662 ~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      ...+|.|.+++..|+|+|+|.+.|..+.......|.|..
T Consensus        66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence            347899999999999999999999888888888888764

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=95.59  E-value=0.049  Score=43.35  Aligned_cols=40  Identities=20%  Similarity=0.175  Sum_probs=33.9

Q ss_pred             CCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEec
Q psy7040         182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD  221 (716)
Q Consensus       182 ~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~  221 (716)
                      ..+.+|+|.+++..|+|.|+|...+........+.|.|..
T Consensus        71 ~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          71 PSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             CCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            3578999999999999999999997777777777777654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=95.52  E-value=0.16  Score=41.07  Aligned_cols=73  Identities=19%  Similarity=0.271  Sum_probs=48.2

Q ss_pred             ccEEEecCCeEEEEEEEeccC----CCeEEEEeCCe------Ee---c-------cCCc----EEEEe--CCCeEEEEEC
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP----IPTKEWLCNDI------TI---I-------SKDR----FKIVN--DDKSTKLKVF  487 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p----~~~~~W~~~~~------~~---~-------~~~~----~~~~~--~~~~~~l~i~  487 (716)
                      ..+.+..|..+.|.|......    ...+.|++...      .+   .       ...+    +.+..  ..+..+|.|.
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH   85 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence            357788999999999986432    24589975321      00   0       0111    11111  1234689999


Q ss_pred             CCCCCCceeEEEEEEcCCC
Q psy7040         488 DSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       488 ~l~~~~~~~y~~~a~n~~g  506 (716)
                      ++++.|.|.|.|.+.|...
T Consensus        86 ~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          86 NLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eCCcccCEEEEEEEEeCCC
Confidence            9999999999999997654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>KOG3632|consensus

Probab=95.51  E-value=0.12  Score=55.38  Aligned_cols=89  Identities=20%  Similarity=0.261  Sum_probs=53.5

Q ss_pred             cCCCCCCCCeEEe-EEeCCeEEEEEECCCCC-----CCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCC-CCe
Q psy7040         221 DKPSPPGGPLKVS-NVHAEGVTLDWKVPDDD-----GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIP-NHK  293 (716)
Q Consensus       221 ~~p~~p~~~~~~~-~~~~~~~~l~W~~p~~~-----~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~~~  293 (716)
                      .+|.+|.. +.+. ......+.++|.+|..+     +|..+++|.++..   ......+.........+.+..|+. ...
T Consensus       767 Gppappld-V~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyad---gqkv~Evafptagst~VelsQlq~~l~~  842 (1335)
T KOG3632|consen  767 GPPAPPLD-VKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYAD---GQKVEEVAFPTAGSTKVELSQLQDGLYH  842 (1335)
T ss_pred             CCCCCchh-eeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeC---CceeeeeecccCCceEEEeeeehhhhee
Confidence            45666655 4443 23567799999987643     6667889988753   333333333333445566666665 445


Q ss_pred             EEEEEEEEcCCCCCCCCccc
Q psy7040         294 YKFRVRAVNKQGKSEPLTTT  313 (716)
Q Consensus       294 y~~~v~a~n~~g~~~~~~~~  313 (716)
                      ..+.|+.....|.+..+...
T Consensus       843 ~~V~vRtms~~gesvdsipA  862 (1335)
T KOG3632|consen  843 GAVGVRTMSVPGESVDSIPA  862 (1335)
T ss_pred             cceeEEecccCccccccccc
Confidence            56777777777766544443

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.51  E-value=0.064  Score=41.38  Aligned_cols=70  Identities=10%  Similarity=0.101  Sum_probs=45.8

Q ss_pred             EEecCCeEEEEEEEec-cCCCe--EEEEeCCeEeccCCcEEE--EeCCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         437 KVRAGSNFEFDINVIG-EPIPT--KEWLCNDITIISKDRFKI--VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~-~p~~~--~~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      .+.+|..+.+.|.+.+ +|.+.  +.|++++..+........  ........+.+.--..++.-.|+|.|.+..+
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~   86 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLR   86 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence            3678999999999954 67776  699999998854321110  0111234566654444455589999987654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=95.44  E-value=0.14  Score=38.23  Aligned_cols=64  Identities=16%  Similarity=0.244  Sum_probs=39.9

Q ss_pred             EEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCCC-----eEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         444 FEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       444 ~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      +.|.|.+.+ .|.+.+.|++++..+.... .......+     ...+.+.--..++...|+|.|.+.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            468899855 5888999999998876433 11111111     1234443334445679999999876543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=95.43  E-value=0.16  Score=40.33  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEe-eecCCCCeEEecCCC--CCCeEEEEEE
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCA-QTEGDTPKGKVLDLI--EGNQYEFRVL  400 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~--~~~~Y~~~v~  400 (716)
                      ...+|.++++... +-...|+|+++....  .-..|.|+++......|.... -......++.+.+..  ....|.++|+
T Consensus        21 ~lp~P~nv~~~s~-nf~~iL~W~~~~~~~--~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~   97 (107)
T PF01108_consen   21 SLPAPQNVTVDSV-NFKHILRWDPGPGSP--PNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVR   97 (107)
T ss_dssp             SGSSCEEEEEEEE-TTEEEEEEEESTTSS--STEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEE
T ss_pred             cCCCCCeeEEEEE-CCceEEEeCCCCCCC--CCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEE
Confidence            3456888888755 556899999943222  457899999966668888772 334556777777644  6889999999


Q ss_pred             EEeCCCC
Q psy7040         401 AVNKGGP  407 (716)
Q Consensus       401 a~n~~g~  407 (716)
                      |......
T Consensus        98 A~~~~~~  104 (107)
T PF01108_consen   98 AEVGNQT  104 (107)
T ss_dssp             EEETTEE
T ss_pred             EEeCCcc
Confidence            9876543

...

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=95.42  E-value=0.045  Score=43.48  Aligned_cols=39  Identities=18%  Similarity=0.136  Sum_probs=34.3

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEec
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD  221 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~  221 (716)
                      ...+|.|.+++..|+|.|.|.+.+..+.....+.|.|..
T Consensus        66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence            357899999999999999999999888888888887764

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=95.41  E-value=0.13  Score=38.47  Aligned_cols=63  Identities=17%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             EEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCCC-----eEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         444 FEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       444 ~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      +.+.|.+.+ .|...++|++++..+............+     ...+.+..-..++...|+|.+.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            468898865 7788999999999875433222211111     22444444445556677777776543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=95.40  E-value=0.053  Score=43.28  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=34.6

Q ss_pred             CCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEec
Q psy7040         182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD  221 (716)
Q Consensus       182 ~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~  221 (716)
                      ....+|+|.+++..|+|.|.|.+.......+..+.|.|..
T Consensus        69 ~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          69 RGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             CCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            3567899999999999999999998777788888888764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=95.32  E-value=0.21  Score=38.37  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             CCeEEEEECCCCCCCceeEEEEEEc-CCCceeeEEEEEE
Q psy7040         479 DKSTKLKVFDSKRGDSGIYTLAVKN-SWGTDKGTAKVTV  516 (716)
Q Consensus       479 ~~~~~l~i~~l~~~~~~~y~~~a~n-~~g~~~~s~~~~v  516 (716)
                      ....++.|.++...|.|.|+|...+ ..|....+..+.|
T Consensus        57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          57 LLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             CCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            3467999999999999999999765 6787777777765

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.31  E-value=0.15  Score=41.13  Aligned_cols=71  Identities=21%  Similarity=0.327  Sum_probs=51.0

Q ss_pred             ccEEEecCCeEEEEEEEe-ccCCCeEEEEeCCe-----Eec--------------cCCcEEEEeC--CCeEEEEECCCCC
Q psy7040         434 SDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDI-----TII--------------SKDRFKIVND--DKSTKLKVFDSKR  491 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~-----~~~--------------~~~~~~~~~~--~~~~~l~i~~l~~  491 (716)
                      ..+.+..|..+.|.|... ......+.|++...     .+.              -..+..+...  ....+|.|.++.+
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~   88 (114)
T PF07686_consen    9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP   88 (114)
T ss_dssp             SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred             CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence            457899999999999998 45666899998432     000              0112222222  3467899999999


Q ss_pred             CCceeEEEEEEcC
Q psy7040         492 GDSGIYTLAVKNS  504 (716)
Q Consensus       492 ~~~~~y~~~a~n~  504 (716)
                      .|+|.|.|.+...
T Consensus        89 ~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   89 SDSGTYFCQVSTS  101 (114)
T ss_dssp             GGEEEEEEEEEES
T ss_pred             CcCEEEEEEEEEC
Confidence            9999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PHA03376 BARF1; Provisional

Probab=95.26  E-value=1.2  Score=38.26  Aligned_cols=121  Identities=12%  Similarity=0.099  Sum_probs=68.3

Q ss_pred             EEEecCCeEEEEEEEe---ccCCCeEEEEeCCe----Eec-------------cCCcEEEEeCCCeEEEEECCCCCCCce
Q psy7040         436 IKVRAGSNFEFDINVI---GEPIPTKEWLCNDI----TII-------------SKDRFKIVNDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~---~~p~~~~~W~~~~~----~~~-------------~~~~~~~~~~~~~~~l~i~~l~~~~~~  495 (716)
                      +....|+.+.|.|...   ..+..++.|++.+.    .+-             .-..+.+..++++.+|.|.++.+.|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            4567788889999765   22445788998422    110             011223334468889999999999999


Q ss_pred             eEEEEEEcCCCceeeEEEEEEE-EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEcc
Q psy7040         496 IYTLAVKNSWGTDKGTAKVTVL-GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTN  557 (716)
Q Consensus       496 ~y~~~a~n~~g~~~~s~~~~v~-~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~  557 (716)
                      .|+|.........-..-.+.+. .++|+-.+-..+-.. ..--+|.....+=++|...|....
T Consensus       101 tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~-~~~~~i~C~sggfP~P~~~Wle~~  162 (221)
T PHA03376        101 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD-FSVLTVTCTVNAFPHPHVQWLMPE  162 (221)
T ss_pred             eEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC-CCeeEEEEecCCcCCchheecccc
Confidence            9999998765444333333333 233444441111000 111233333333356668887654

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=95.26  E-value=0.019  Score=43.78  Aligned_cols=52  Identities=8%  Similarity=0.013  Sum_probs=37.3

Q ss_pred             eccC-cee----eEEEEeCCeEeeec----ccceeeEEEEccCCCCCcE-EEEEEEEcCCCC
Q psy7040         638 SLMP-ISL----ESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTA-QYTVTATNSQGK  689 (716)
Q Consensus       638 ~~~~-~~~----~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y-~y~~~a~n~~G~  689 (716)
                      |.|. ..|    .+.|++++......    .......|.|.++...|.| .|.|.|.|....
T Consensus        23 L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          23 LPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             EEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            6675 344    89999876442222    1222379999999999999 899999997643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=95.20  E-value=0.071  Score=41.69  Aligned_cols=36  Identities=14%  Similarity=0.225  Sum_probs=29.3

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEc-CCCCceeeEEEEE
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATN-SQGKDQVFIEVVV  698 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n-~~G~~~~s~~l~v  698 (716)
                      ..+|.|.+|...|+|+|.|.+.| ..|..+....|.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            36799999999999999999998 5666555565655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=95.17  E-value=0.49  Score=37.76  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       480 ~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      ...+|.|.++...|.|.|+|...+..........+.+.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            46899999999999999999999888877777777664

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=95.15  E-value=0.25  Score=42.36  Aligned_cols=84  Identities=19%  Similarity=0.229  Sum_probs=58.4

Q ss_pred             ccEEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEec----------c--CCcEE-EEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITII----------S--KDRFK-IVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~----------~--~~~~~-~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+.+|+.+.|.|... ....+.++|.+....+.          +  .+++. +........+.|.++...|.|.|.|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            357789999999999984 66788899998743221          1  12333 2333456789999999999999999


Q ss_pred             EEEcC-CC-ceeeEEEEEEE
Q psy7040         500 AVKNS-WG-TDKGTAKVTVL  517 (716)
Q Consensus       500 ~a~n~-~g-~~~~s~~~~v~  517 (716)
                      ....- .| ..+....+.+.
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EEEecCCCCCceeEEEEEEE
Confidence            87653 34 44555555555

>cd00098 IgC Immunoglobulin Constant domain

Probab=95.10  E-value=0.096  Score=40.55  Aligned_cols=69  Identities=23%  Similarity=0.200  Sum_probs=46.5

Q ss_pred             ecCCeEEEEEEEecc-C-CCeEEEEeCCeEeccCCc-EEEEeCC--C---eEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         439 RAGSNFEFDINVIGE-P-IPTKEWLCNDITIISKDR-FKIVNDD--K---STKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       439 ~~g~~~~~~~~v~~~-p-~~~~~W~~~~~~~~~~~~-~~~~~~~--~---~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      ..+..+.|.|.+.+. | ...+.|++++..+..... .......  .   ...|.+......+.+.|+|.+.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            357788999999987 5 368999999988765443 2222111  1   123555555555899999999887653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=95.02  E-value=0.15  Score=41.26  Aligned_cols=70  Identities=19%  Similarity=0.221  Sum_probs=50.5

Q ss_pred             ccEEEecCCeEEEEEEEecc-CCCeEEEEeCCe--E---e---------ccCCcEEEEe--CCCeEEEEECCCCCCCcee
Q psy7040         434 SDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDI--T---I---------ISKDRFKIVN--DDKSTKLKVFDSKRGDSGI  496 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~--~---~---------~~~~~~~~~~--~~~~~~l~i~~l~~~~~~~  496 (716)
                      ..+.+..|+.+.|.|..... ....+.|++...  .   +         ...+++.+..  ......|.|.++++.|.|.
T Consensus         7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~   86 (116)
T cd07706           7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAK   86 (116)
T ss_pred             CceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            35779999999999998654 456789997421  1   0         0124455442  3456789999999999999


Q ss_pred             EEEEEEc
Q psy7040         497 YTLAVKN  503 (716)
Q Consensus       497 y~~~a~n  503 (716)
                      |.|.+.+
T Consensus        87 Y~C~~~~   93 (116)
T cd07706          87 YFCALST   93 (116)
T ss_pred             EEEEEEC
Confidence            9999875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=95.00  E-value=0.096  Score=39.18  Aligned_cols=53  Identities=11%  Similarity=0.095  Sum_probs=35.1

Q ss_pred             eccCcee-----eEEEEeCCeEeeecc-------cc--ee--eEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDN-------VD--YF--TKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~-------~~--~~--~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      |.|.+.|     .++|+++|+++....       .+  ++  ..+.+.-...++...|+|.|.+.....
T Consensus         4 LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           4 LRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            5566665     899999998765531       11  11  334444455667789999999987655

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=94.99  E-value=0.1  Score=40.73  Aligned_cols=37  Identities=14%  Similarity=0.200  Sum_probs=31.3

Q ss_pred             CccEEEEeccccCcceEEEEEEEe-CCCCceeEEEEEE
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEVIV  219 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n-~~g~~~~~~~~~v  219 (716)
                      ...+|+|.+++..|+|.|.|.+.+ ..|.......|.|
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            467999999999999999999875 6677777777766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=94.99  E-value=0.18  Score=40.14  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=34.9

Q ss_pred             eeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       662 ~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      ...+|.|.+|+..|+|.|+|...+..........|.|..
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            348999999999999999999999998888888888764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>KOG4152|consensus

Probab=94.55  E-value=0.18  Score=49.78  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=72.3

Q ss_pred             EEEcCCCCCCeEEEEEEEEcCCCCCccceeee----ccCCCCCCccceeec--cceeEEEEE-----EeeEEEEeeeecc
Q psy7040         572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV----VTDKPSAPEGPIQWL--LTLTDVTWE-----ISNYLQELHSSLM  640 (716)
Q Consensus       572 ~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~----v~~~p~~~~~~~~~~--~~~v~l~w~-----i~~y~v~~~~~~~  640 (716)
                      ..-..|-+|+.|.|+|.|.|..|.++++....    ++..|..|. -..+.  -..+.|.|.     -.|-+++|..+..
T Consensus       649 ~~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS-~~ri~k~~eGi~l~weppt~p~sg~Iieys~ylA  727 (830)
T KOG4152|consen  649 PVKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPS-GARIKKTIEGISLVWEPPTKPGSGTIIEYSPYLA  727 (830)
T ss_pred             ccccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcc-cccccccccceeecccCCCCCCCcceEEeehhhH
Confidence            34457889999999999999999999988777    466666665 33333  447889998     3455555544211


Q ss_pred             Cce-----e--eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEE
Q psy7040         641 PIS-----L--ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE  695 (716)
Q Consensus       641 ~~~-----~--~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~  695 (716)
                      -..     +  ++-.++.---+..+  ....+----+.+.....+..|++.|.|+.|.+.....
T Consensus       728 i~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpatqv  791 (830)
T KOG4152|consen  728 IITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPATQV  791 (830)
T ss_pred             hhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcceEE
Confidence            000     0  22222211000000  0000111112344457789999999999999866543

>cd00096 Ig Immunoglobulin domain

Probab=94.44  E-value=0.25  Score=35.16  Aligned_cols=61  Identities=28%  Similarity=0.293  Sum_probs=44.8

Q ss_pred             EEEEEEeccCCCeEEEEeCCeEeccCCcE----EEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         445 EFDINVIGEPIPTKEWLCNDITIISKDRF----KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~----~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      .+.|.+.+.+...+.|++.+.........    ..........+.|.++...+.|.|.|.+.+..
T Consensus         2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            57788887778889999988765433211    11122346689999999999999999998776

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=94.38  E-value=0.12  Score=40.95  Aligned_cols=70  Identities=20%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             cEEEeeeCCeEEEEecCCC-----CCCCcc------ceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEE
Q psy7040         331 PEIKDFDTDFVELAWTPPE-----QNGGSP------IVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV  399 (716)
Q Consensus       331 ~~~~~~~~~~i~l~W~~p~-----~~~~~~------i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v  399 (716)
                      +.+ ...++.|.|.+.+|.     ...+..      -..|.|.+...++.  ............+.|.+|.|++.|-++|
T Consensus         8 v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~--~~~~~~~~~~~~~~l~~L~p~t~YCv~V   84 (106)
T PF09294_consen    8 VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN--EKKKEIETKNSSVTLSDLKPGTNYCVSV   84 (106)
T ss_dssp             EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS--CEEEEEESSSEEEEEES--TTSEEEEEE
T ss_pred             EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc--cceEEEeecCCEEEEeCCCCCCCEEEEE
Confidence            666 577889999999875     111101      24699998887755  2222334566778999999999999999


Q ss_pred             EEEe
Q psy7040         400 LAVN  403 (716)
Q Consensus       400 ~a~n  403 (716)
                      +|..
T Consensus        85 ~~~~   88 (106)
T PF09294_consen   85 QAFS   88 (106)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9943

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=94.37  E-value=0.25  Score=39.26  Aligned_cols=67  Identities=21%  Similarity=0.273  Sum_probs=46.4

Q ss_pred             EEecCCeEEEEEEEecc-CCCeEEEEeCCeE---e--------c-----------cCCcEEEE--eCCCeEEEEECCCCC
Q psy7040         437 KVRAGSNFEFDINVIGE-PIPTKEWLCNDIT---I--------I-----------SKDRFKIV--NDDKSTKLKVFDSKR  491 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~~---~--------~-----------~~~~~~~~--~~~~~~~l~i~~l~~  491 (716)
                      .++.|+.+.|.|.+... ....+.|++....   .        .           ...++.+.  .......|.|.++++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            47789999999998763 3457999975431   0        0           01234332  233456799999999


Q ss_pred             CCceeEEEEEEc
Q psy7040         492 GDSGIYTLAVKN  503 (716)
Q Consensus       492 ~~~~~y~~~a~n  503 (716)
                      +|.|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999998863

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=94.36  E-value=0.15  Score=38.00  Aligned_cols=53  Identities=11%  Similarity=0.022  Sum_probs=33.4

Q ss_pred             eccCcee-----eEEEEeCCeEeeecc------cc----eeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDN------VD----YFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~------~~----~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      +.|.+.|     .+.|+++|+++....      .+    ....+.+.--..++...|+|.|.|.....
T Consensus         4 L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           4 LTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            5565554     899999998875331      11    11234443334455679999999987664

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=94.27  E-value=0.1  Score=41.72  Aligned_cols=27  Identities=30%  Similarity=0.336  Sum_probs=23.8

Q ss_pred             eeeEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040         662 YFTKITIRPLQRSDTAQYTVTATNSQG  688 (716)
Q Consensus       662 ~~~~~~i~~l~~~~~y~y~~~a~n~~G  688 (716)
                      ....|.|.+++.+|+|.|.|.+.+..|
T Consensus        68 ~~~~L~I~~~~~~DsG~Y~C~~~~~~~   94 (109)
T cd04983          68 KSSSLHISAAQLSDSAVYFCALSESGG   94 (109)
T ss_pred             CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            447899999999999999999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=94.27  E-value=0.13  Score=39.56  Aligned_cols=41  Identities=5%  Similarity=0.139  Sum_probs=31.0

Q ss_pred             eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040         645 ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       645 ~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      .+.|+|+|......      .......|.|..+.++|+|.|+|...-
T Consensus        30 ~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          30 RFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             EEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            68899987653221      133457899999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=94.26  E-value=0.46  Score=35.15  Aligned_cols=73  Identities=15%  Similarity=0.253  Sum_probs=49.9

Q ss_pred             EEecCCeEEEEEEEeccCCC--eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         437 KVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      .+-.|+.+.|+|.....+.|  .++|...+.....      ....+...|.+..+...|+|.++|...-..-.......+
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V   83 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI   83 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence            46789999999988554444  8999977654321      111245589999999999999999996443333344443


Q ss_pred             E
Q psy7040         515 T  515 (716)
Q Consensus       515 ~  515 (716)
                      .
T Consensus        84 ~   84 (88)
T cd07694          84 K   84 (88)
T ss_pred             E
Confidence            3

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=94.26  E-value=0.34  Score=37.64  Aligned_cols=76  Identities=22%  Similarity=0.246  Sum_probs=45.7

Q ss_pred             CCeEEEEEEEeccCC-CeEEEEeCCeE----ec-----------c--CCcEEE-EeCCCeEEEEECCCCCCCceeEEEEE
Q psy7040         441 GSNFEFDINVIGEPI-PTKEWLCNDIT----II-----------S--KDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAV  501 (716)
Q Consensus       441 g~~~~~~~~v~~~p~-~~~~W~~~~~~----~~-----------~--~~~~~~-~~~~~~~~l~i~~l~~~~~~~y~~~a  501 (716)
                      |+.+.|.|....... ..+.|++....    +.           .  ..+..+ .......+|.|.++..+|.|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            566788887654432 35888874321    00           0  111111 11235678999999999999999997


Q ss_pred             Ec-CCCceeeEEEEEE
Q psy7040         502 KN-SWGTDKGTAKVTV  516 (716)
Q Consensus       502 ~n-~~g~~~~s~~~~v  516 (716)
                      .+ ..|.....+.++|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            64 4555555555544

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=94.25  E-value=0.25  Score=38.98  Aligned_cols=66  Identities=18%  Similarity=0.300  Sum_probs=46.4

Q ss_pred             EecCCeEEEEEEEeccCCCeEEEEeCCeE-------e---cc------------CCcEEEEeCCCeEEEEECCCCCCCce
Q psy7040         438 VRAGSNFEFDINVIGEPIPTKEWLCNDIT-------I---IS------------KDRFKIVNDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       438 ~~~g~~~~~~~~v~~~p~~~~~W~~~~~~-------~---~~------------~~~~~~~~~~~~~~l~i~~l~~~~~~  495 (716)
                      +..|+.+.|.|.+.......+.|++....       +   ..            ..++..........|.|.++++.|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            57899999999886555566889875422       0   00            12233334456678999999999999


Q ss_pred             eEEEEEEc
Q psy7040         496 IYTLAVKN  503 (716)
Q Consensus       496 ~y~~~a~n  503 (716)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=94.25  E-value=0.21  Score=38.93  Aligned_cols=70  Identities=13%  Similarity=0.122  Sum_probs=49.4

Q ss_pred             EEEecCCeEEEEEEEec-cCCCeEEEEeCCeEe-------------ccCCcEEEEe--CCCeEEEEECCCCCCCceeEEE
Q psy7040         436 IKVRAGSNFEFDINVIG-EPIPTKEWLCNDITI-------------ISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~~~~-------------~~~~~~~~~~--~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      +.+..|+.+.+.|.... .....+.|++.....             ....++.+..  ......|.|.++..+|.|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            46789999999998864 345678899765211             1123344432  2356789999999999999999


Q ss_pred             EEEcCC
Q psy7040         500 AVKNSW  505 (716)
Q Consensus       500 ~a~n~~  505 (716)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            887644

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=94.25  E-value=0.44  Score=38.69  Aligned_cols=72  Identities=18%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             cccEEEecCCeEEEEEEEeccC------CCeEEEEeCCeEe--------c---------cCCcEEEE--eCCCeEEEEEC
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEP------IPTKEWLCNDITI--------I---------SKDRFKIV--NDDKSTKLKVF  487 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p------~~~~~W~~~~~~~--------~---------~~~~~~~~--~~~~~~~l~i~  487 (716)
                      +..+.+..|+.+.|.|......      ...+.|++....-        .         -..++.+.  ......+|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            3457899999999999775322      3458899764210        0         01233332  23456789999


Q ss_pred             CCCCCCceeEEEEEEcC
Q psy7040         488 DSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       488 ~l~~~~~~~y~~~a~n~  504 (716)
                      +++..|++.|.|.....
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999988653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=94.24  E-value=0.2  Score=38.47  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             CccEEEEeccccCcceEEEEEE-EeCCCCceeEEEEEE
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTA-ENINGKDSVEVEVIV  219 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a-~n~~g~~~~~~~~~v  219 (716)
                      .+.+|.|.+++..|+|.|+|.. ....|..+++..|+|
T Consensus        58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            4789999999999999999975 567888888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=94.22  E-value=0.12  Score=35.67  Aligned_cols=44  Identities=23%  Similarity=0.142  Sum_probs=31.4

Q ss_pred             eccCcee-eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         638 SLMPISL-ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       638 ~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      +.|+..+ .+.|.+++..+...    ...+.+.+-. ++.|.|.|.+.+.
T Consensus        12 lTCP~~~~~i~W~~n~~~~~g~----~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692          12 VTCPLSGDDIKWKKNDQVSQGS----DEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EECCCCCCCceEEeCCccCCCC----CceEEeeccC-CCCceEEEEeCCC
Confidence            7787655 79999998655432    2345555666 8899999998653

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02982 hypothetical protein; Provisional

Probab=93.80  E-value=0.85  Score=39.54  Aligned_cols=103  Identities=11%  Similarity=0.179  Sum_probs=67.9

Q ss_pred             EecCCeEEEEEEE-eccCCCeEEEEeCCeE-ec----------c--------CCcEEEEeCCCeEEEEECCCCCCCceeE
Q psy7040         438 VRAGSNFEFDINV-IGEPIPTKEWLCNDIT-II----------S--------KDRFKIVNDDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       438 ~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~-~~----------~--------~~~~~~~~~~~~~~l~i~~l~~~~~~~y  497 (716)
                      ...++.+.|+|.. .+.......|..++.- +.          .        -..+.+..+++.++|++++..+...|-|
T Consensus        36 a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCY  115 (251)
T PHA02982         36 ATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCF  115 (251)
T ss_pred             ccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCce
Confidence            3446677788864 2223334667654321 11          1        2346677788999999999999999999


Q ss_pred             EEEEEcCCCceee-EEEEEE--EEEEEEEeCCCCCCCCceeeEEEEEE
Q psy7040         498 TLAVKNSWGTDKG-TAKVTV--LGCSLKWNPPEDDGGAPIEYYMVEKM  542 (716)
Q Consensus       498 ~~~a~n~~g~~~~-s~~~~v--~~v~l~W~~p~~~~~~~i~~y~v~~~  542 (716)
                      +|.|....+.... ..-+.+  ..+.+.|..  .++...+..|...+.
T Consensus       116 tc~~ks~~~k~E~c~kCl~V~~~~V~~~W~e--~nNeT~V~CyVgS~~  161 (251)
T PHA02982        116 TCEAKDAEGKEETCEKCLEIQKEDILYVVEE--HNNETIITCFVGSKH  161 (251)
T ss_pred             EEEEecCCCchheeheeeeEecceEEEEEEe--cCCeEEEEEEEEecc
Confidence            9999987765543 444444  489999985  445555666655444

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=93.76  E-value=0.18  Score=38.75  Aligned_cols=27  Identities=30%  Similarity=0.422  Sum_probs=24.3

Q ss_pred             ccEEEEeccccCcceEEEEEEEeCCCC
Q psy7040         184 NTKLGVRMAQRADAGFYTVTAENINGK  210 (716)
Q Consensus       184 ~~~l~i~~l~~~~~g~y~c~a~n~~g~  210 (716)
                      +.+|+|.++++.|+|.|+|...+..|.
T Consensus        56 ~~sL~I~~l~~~DsG~Y~c~v~~~~~~   82 (92)
T cd05741          56 NGSLLIQNLTKEDSGTYTLQIISTNGV   82 (92)
T ss_pred             CceEEEccCCchhcEEEEEEEEcCCCc
Confidence            379999999999999999999987755

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=93.75  E-value=0.2  Score=38.72  Aligned_cols=53  Identities=11%  Similarity=0.075  Sum_probs=36.7

Q ss_pred             eccCcee-------eEEEEeCCeEeeecc--------cceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         638 SLMPISL-------ESQYLMNDKRVTIDN--------VDYFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       638 ~~~~~~~-------~~~W~~~~~~~~~~~--------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      +.|.+.|       .+.|+++++++....        ......+.+.--..++.-.|+|+|.+..+..
T Consensus        21 L~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~   88 (100)
T cd05755          21 LQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE   88 (100)
T ss_pred             EEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence            6677776       479999999886641        2223566665444555559999999987653

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=93.75  E-value=0.26  Score=39.58  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=26.8

Q ss_pred             eEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040         664 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV  696 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l  696 (716)
                      .++.|.+|+.+|.|+|+|.+.|..+-......+
T Consensus        80 aSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~  112 (116)
T cd05879          80 GSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQV  112 (116)
T ss_pred             eEEEEccCCcccCEEEEEEEEcCCCcCCceeEE
Confidence            789999999999999999999987644333333

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=93.72  E-value=0.13  Score=40.71  Aligned_cols=38  Identities=18%  Similarity=0.243  Sum_probs=33.0

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      ..+|.|.+|+.+|+|.|+|.........+....|.|..
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            37999999999999999999999777778888888763

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd00098 IgC Immunoglobulin Constant domain

Probab=93.65  E-value=0.16  Score=39.37  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=39.8

Q ss_pred             cceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeeccc----------cee--eEEEEccCCCCCcEEEEEEEEcC
Q psy7040         619 LTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNV----------DYF--TKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       619 ~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~----------~~~--~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      +..+.|.+.+.||.-.        ...++|+++|..+.....          ...  ..|.|.....++.+.|+|.|.+.
T Consensus        13 ~~~~~L~C~a~g~~P~--------~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~   84 (95)
T cd00098          13 GGSVTLTCLATGFYPP--------DITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHE   84 (95)
T ss_pred             CCCeEEEEEEeeEECC--------CcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeC
Confidence            4566666666655310        006899999988765421          111  34556555556999999999997


Q ss_pred             CCC
Q psy7040         687 QGK  689 (716)
Q Consensus       687 ~G~  689 (716)
                      ...
T Consensus        85 ~~~   87 (95)
T cd00098          85 SLP   87 (95)
T ss_pred             CCC
Confidence            654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=93.58  E-value=0.22  Score=38.62  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=30.2

Q ss_pred             cCCccEEEEeccccCcceEEEEEEEeCCCCc-eeEEEEEE
Q psy7040         181 LDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIV  219 (716)
Q Consensus       181 ~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~~~v  219 (716)
                      ...+.+|+|.+++..|+|.|.|...+..|.. .....|.|
T Consensus        57 ~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          57 SQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            3446899999999999999999999887653 44444443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=93.51  E-value=0.14  Score=40.22  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=27.6

Q ss_pred             ccEEEEeccccCcceEEEEEEEeCCCC-ceeEEEE
Q psy7040         184 NTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEV  217 (716)
Q Consensus       184 ~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~~  217 (716)
                      +++|.|.+++..|+|.|+|.+.|.... ....+.+
T Consensus        69 ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          69 NGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             CCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEE
Confidence            679999999999999999999998744 4444444

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=93.37  E-value=0.3  Score=37.43  Aligned_cols=34  Identities=9%  Similarity=0.070  Sum_probs=27.1

Q ss_pred             CceEEEEe-cCCccEEEEeccccCcceEEEEEEEe
Q psy7040         173 GMVRKVQH-LDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       173 ~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      +.|+.+.. .+...+|+|.+++..|+|.|.|.+..
T Consensus        49 d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881          49 DSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            45666554 45567899999999999999999974

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=93.27  E-value=0.22  Score=37.22  Aligned_cols=53  Identities=11%  Similarity=0.085  Sum_probs=34.7

Q ss_pred             eccCcee-----eEEEEeCCeEeeecc------cc-----eeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDN------VD-----YFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~------~~-----~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      +.|.+.|     .++|+++|+++....      ..     ....+.+.--..++.-.|+|+|.|..-..
T Consensus         4 LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~   72 (83)
T cd05884           4 LTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA   72 (83)
T ss_pred             EEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence            5565555     889999999875531      11     11355555444566779999999976554

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=93.15  E-value=1  Score=48.04  Aligned_cols=47  Identities=28%  Similarity=0.417  Sum_probs=36.6

Q ss_pred             EEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccC
Q psy7040          89 YLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGES  136 (716)
Q Consensus        89 y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~  136 (716)
                      +.+.|.......|.....+....+.+.++.+| +|.++|+|.|..|..
T Consensus       639 ~~~a~~a~~~~~~vta~rt~~~~~~~~gi~~G-qY~i~VrAiN~~g~~  685 (952)
T COG4733         639 AAWAYEAGWDGNWITAPRTSAAGFDVEGIPAG-QYAIRVRAINVFEPN  685 (952)
T ss_pred             HHHHhhcccCCceEecccccccceeecCcCcc-ceEEEEEEeeccCCC
Confidence            34445444444788888888899999999995 899999999988843

>cd00096 Ig Immunoglobulin domain

Probab=93.06  E-value=0.32  Score=34.51  Aligned_cols=43  Identities=26%  Similarity=0.320  Sum_probs=32.9

Q ss_pred             eEEEEeCCeEeeec----------ccceeeEEEEccCCCCCcEEEEEEEEcCC
Q psy7040         645 ESQYLMNDKRVTID----------NVDYFTKITIRPLQRSDTAQYTVTATNSQ  687 (716)
Q Consensus       645 ~~~W~~~~~~~~~~----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~  687 (716)
                      .+.|++++......          .......+.|.++...|.|.|+|.+.+..
T Consensus        14 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          14 TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             cEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            77888876554322          23444789999999999999999999876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=92.34  E-value=0.39  Score=38.69  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=24.4

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                      ..+|.|.+|+..|+|+|.|.+.|..+.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          78 DASILIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             ceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence            368999999999999999999997764

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=92.30  E-value=2.3  Score=33.82  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=25.1

Q ss_pred             EEecCCeEEEEEEEecc-CC-CeEEEEeCCeEecc
Q psy7040         437 KVRAGSNFEFDINVIGE-PI-PTKEWLCNDITIIS  469 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~-p~-~~~~W~~~~~~~~~  469 (716)
                      ....|..+.|.|.+.+. |. ..+.|++++..+..
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~   51 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA   51 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence            34467778999999764 43 58999999998753

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>KOG4806|consensus

Probab=92.23  E-value=10  Score=36.12  Aligned_cols=33  Identities=27%  Similarity=0.188  Sum_probs=25.9

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCccceee
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV  602 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~  602 (716)
                      .+-+|.||.||..|...|.|.-..|..-+-..+
T Consensus       410 ~teTI~gL~PgssYlldv~a~~~~g~~lpyqa~  442 (454)
T KOG4806|consen  410 ETETILGLMPGSSYLLDVTANLSMGKPLPYQAL  442 (454)
T ss_pred             hhhhhcccccCceEEEEEEEcccCCccccceeE
Confidence            556789999999999999998877765544433

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=92.08  E-value=0.93  Score=36.65  Aligned_cols=70  Identities=20%  Similarity=0.253  Sum_probs=47.6

Q ss_pred             ccEEEecCCeEEEEEEEeccC--CCeEEEEeCCe--E---e---c-----------cCCcEEEEeCC--CeEEEEECCCC
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP--IPTKEWLCNDI--T---I---I-----------SKDRFKIVNDD--KSTKLKVFDSK  490 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p--~~~~~W~~~~~--~---~---~-----------~~~~~~~~~~~--~~~~l~i~~l~  490 (716)
                      ..+.+..|+.++|.|......  ...+.|++...  .   +   .           ...++......  ....|.|.++.
T Consensus         5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   84 (117)
T cd04981           5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT   84 (117)
T ss_pred             CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence            356789999999999876543  45688986432  1   0   0           01234443332  34579999999


Q ss_pred             CCCceeEEEEEEc
Q psy7040         491 RGDSGIYTLAVKN  503 (716)
Q Consensus       491 ~~~~~~y~~~a~n  503 (716)
                      ++|++.|-|.+..
T Consensus        85 ~~Dsa~YyCa~~~   97 (117)
T cd04981          85 PEDTAVYYCARGL   97 (117)
T ss_pred             HHHCEEEEEEEEc
Confidence            9999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.96  E-value=1.4  Score=33.40  Aligned_cols=67  Identities=13%  Similarity=0.231  Sum_probs=41.9

Q ss_pred             CCeEEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEE-eCCC----eEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         441 GSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIV-NDDK----STKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       441 g~~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      +..+.+.|.. .|.|.+.+.|+.++..+......... ..+.    ...|.+..-..++.-.++|.|.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            5788999966 78899999999999877211111111 1111    234555544445677889999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=91.79  E-value=1.4  Score=33.79  Aligned_cols=65  Identities=14%  Similarity=0.199  Sum_probs=35.3

Q ss_pred             CCeEEEEEEEecc-CCC-eEEEEeCCeEeccCCc-EEEEeC--CCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         441 GSNFEFDINVIGE-PIP-TKEWLCNDITIISKDR-FKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       441 g~~~~~~~~v~~~-p~~-~~~W~~~~~~~~~~~~-~~~~~~--~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      ++.+.|.|.+.+. |.. .+.|.+++........ ......  +.-.......+.+.+...|+|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            5678999999885 443 8899999863321111 111111  111111122233346678888886654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=91.77  E-value=0.51  Score=36.61  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=30.0

Q ss_pred             CccEEEEeccccCcceEEEEEEE-eCCCCceeEEEEEE
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAE-NINGKDSVEVEVIV  219 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~-n~~g~~~~~~~~~v  219 (716)
                      ...+|+|.+++.+|+|.|.|... ...|..+..+.|+|
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            46889999999999999999765 46666666666665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>KOG4228|consensus

Probab=91.57  E-value=1  Score=49.76  Aligned_cols=216  Identities=12%  Similarity=0.032  Sum_probs=119.1

Q ss_pred             ccCCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          52 DRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        52 ~~~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      ...++++....++.....+..+.|.....    ....|.+.++...++ +........+.+....+.+-+.+.+  .++|
T Consensus        22 ~~~p~~~~~~~vt~~~~~~~~~~~~~~~t----~~~~y~v~~~~~~s~-~~~~~~~~~~~~s~~~~~~~~~~~~--~evn   94 (1087)
T KOG4228|consen   22 NGGPPGPSTPNVTGSTATSWVQAELLGST----WPNYYQVIFKALSSG-YGYIDVDLTTRLSYPCLSPPSFLEL--VEVN   94 (1087)
T ss_pred             cCCCCCCCCcccccccccceeehhhccCC----ChhhhheeeeEeccC-cceeeccceeecccCCCCCcchhhh--hhcc
Confidence            33444455567888888899999997642    467777777665555 4333333335567777777777777  7788


Q ss_pred             cCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEE-----EEEe
Q psy7040         132 KEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTV-----TAEN  206 (716)
Q Consensus       132 ~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c-----~a~n  206 (716)
                      ..|.+..+......+.......                          .......+.+..........+-|     .+.+
T Consensus        95 t~~~a~~~~~~~~rt~~~~~~~--------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  148 (1087)
T KOG4228|consen   95 TIGRAPFQCPVAPRTGEQATLS--------------------------LQRDVQALMLSAATAHVNWRRFSATVGPLAIA  148 (1087)
T ss_pred             cccccccccccCCccccccccc--------------------------cccchhhhhhhhhhhccCcccccccccccccC
Confidence            8887777766555443211100                          00111112222222222222222     2333


Q ss_pred             CCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEc
Q psy7040         207 INGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVE  286 (716)
Q Consensus       207 ~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~  286 (716)
                      ..|....+..+.+..-+..|..+.  ...+...++++|..+...   .+..|.+...+.+......+..  .........
T Consensus       149 ~~~~~~~~t~i~i~~~~~~p~~~~--~~~~~~~it~~w~~~~~~---~~~~ykl~~~~~d~~~~~~v~~--~~~~~~~t~  221 (1087)
T KOG4228|consen  149 SPGLGPPSTYIQITTNANSPIQPG--EEEEYTTITGSWSPPHAV---SLDTYKLLHLDPDTGYEISVTL--TPPGSGGTG  221 (1087)
T ss_pred             CcccCCCCceEEEeccCCCCCCCC--cceEEEEEEecCCCCCcc---cchhhhhhhcCCcccceeeeec--cCCCCCccc
Confidence            333322355555555554444433  555677899999975432   4677777665553333222222  234455556


Q ss_pred             CCCCCCeEEEEEEEEcCCCCC
Q psy7040         287 GLIPNHKYKFRVRAVNKQGKS  307 (716)
Q Consensus       287 ~L~p~~~y~~~v~a~n~~g~~  307 (716)
                      ++.+-..+.++|.+....+..
T Consensus       222 ~~~~~~~~~~~~ae~~~~~~~  242 (1087)
T KOG4228|consen  222 DLGPPSISRFKCAEPDRGPLG  242 (1087)
T ss_pred             CCCCcccccccccCccccccC
Confidence            777777888888886655443

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=91.35  E-value=2.3  Score=32.70  Aligned_cols=30  Identities=20%  Similarity=0.195  Sum_probs=23.0

Q ss_pred             cCCeEEEEEEEecc-CCC-eEEEEeCCeEecc
Q psy7040         440 AGSNFEFDINVIGE-PIP-TKEWLCNDITIIS  469 (716)
Q Consensus       440 ~g~~~~~~~~v~~~-p~~-~~~W~~~~~~~~~  469 (716)
                      .+....|.|.+.+. |.. .+.|.+++..+..
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~   44 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETE   44 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence            56778999999875 433 6899999988654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=91.30  E-value=2.4  Score=32.64  Aligned_cols=35  Identities=9%  Similarity=0.035  Sum_probs=26.9

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      ..++.|.+|..+|.|.|+|...+ ...+.....+.|
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t-~P~g~~~~~i~~   93 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVT-YPQGSWEKVIEV   93 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEe-CCCCCeEEEEEE
Confidence            37899999999999999999887 444444444444

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=90.56  E-value=2  Score=33.55  Aligned_cols=81  Identities=19%  Similarity=0.236  Sum_probs=57.3

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeec-CCCCe-----EEec--CCCCCCeE
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTE-GDTPK-----GKVL--DLIEGNQY  395 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~-~~~~~-----~~i~--~l~~~~~Y  395 (716)
                      +|..|.++.+...+...++.-|++....+  .-..|.+.|.... ..|..+.... ....+     ..+.  +..-...|
T Consensus         7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~--l~~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y   83 (104)
T PF09067_consen    7 PPEKPENLKCFSREMETFTCFWEPGSEGN--LPTNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY   83 (104)
T ss_dssp             HCCCCEEEEEEBSSSS-EEEEEEEESSST--STCEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred             CCCCCccCccCCCCCCcEEEEeeCCCCCC--CCCcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence            57788899999888899999999854332  2244999998876 6677665432 12233     4444  77889999


Q ss_pred             EEEEEEEeCCCC
Q psy7040         396 EFRVLAVNKGGP  407 (716)
Q Consensus       396 ~~~v~a~n~~g~  407 (716)
                      .++|.|.|..|.
T Consensus        84 ~i~V~a~~~~~~   95 (104)
T PF09067_consen   84 CIQVEATNALGS   95 (104)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEeccCCCc
Confidence            999999998763

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>smart00407 IGc1 Immunoglobulin C-Type

Probab=90.43  E-value=1  Score=32.77  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=25.8

Q ss_pred             eEEEEeCCeEeeec----------cccee--eEEEEccCCCCCcEEEEEEEEcCC
Q psy7040         645 ESQYLMNDKRVTID----------NVDYF--TKITIRPLQRSDTAQYTVTATNSQ  687 (716)
Q Consensus       645 ~~~W~~~~~~~~~~----------~~~~~--~~~~i~~l~~~~~y~y~~~a~n~~  687 (716)
                      .+.|+++|+++..+          ...+.  ..|.|.....++.-.|+|.+....
T Consensus        17 ~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407       17 TVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             EEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            78999999864332          00111  344554445567778888887643

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=89.96  E-value=0.82  Score=35.17  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=27.0

Q ss_pred             ccEEEEeccccCcceEEEEEEEe-CCCCceeEEEE
Q psy7040         184 NTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEV  217 (716)
Q Consensus       184 ~~~l~i~~l~~~~~g~y~c~a~n-~~g~~~~~~~~  217 (716)
                      +.+|.|.+++.+|+|.|+|...+ ..|..++.+.+
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            68999999999999999997765 46665555544

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=89.92  E-value=0.46  Score=37.54  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=24.1

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCC
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENING  209 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g  209 (716)
                      ...+|+|.+++..|+|.|.|.+.+..+
T Consensus        65 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          65 SSFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            467899999999999999999987665

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=89.88  E-value=1.1  Score=36.24  Aligned_cols=27  Identities=30%  Similarity=0.336  Sum_probs=24.0

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                      ..+|+|.+++..|+|.|.|.+.|..+.
T Consensus        79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          79 DASIVIHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence            368999999999999999999997654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>smart00406 IGv Immunoglobulin V-Type

Probab=89.35  E-value=2.1  Score=31.51  Aligned_cols=29  Identities=28%  Similarity=0.446  Sum_probs=22.5

Q ss_pred             cEEEEeC--CCeEEEEECCCCCCCceeEEEE
Q psy7040         472 RFKIVND--DKSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       472 ~~~~~~~--~~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      ++.+...  .....|.|.++++.|.|.|.|.
T Consensus        50 R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       50 RVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             cEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4444433  5667899999999999999995

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.00  E-value=0.78  Score=36.77  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=23.5

Q ss_pred             CCccEEEEeccccCcceEEEEEEEeC
Q psy7040         182 DYNTKLGVRMAQRADAGFYTVTAENI  207 (716)
Q Consensus       182 ~~~~~l~i~~l~~~~~g~y~c~a~n~  207 (716)
                      ....+|.|.+++..|+|.|.|.+...
T Consensus        76 ~~~~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   76 QNNFSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             TTEEEEEESSESGGGEEEEEEEEEES
T ss_pred             CCeEEEEECCCCcCcCEEEEEEEEEC
Confidence            45789999999999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=88.95  E-value=2  Score=33.49  Aligned_cols=81  Identities=20%  Similarity=0.246  Sum_probs=56.4

Q ss_pred             CCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccC-cccce-----EEE--cCCCCCCe
Q psy7040         222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE-GPVTG-----LEV--EGLIPNHK  293 (716)
Q Consensus       222 ~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~-~~~~~-----~~i--~~L~p~~~  293 (716)
                      +|..|.. +.........++--|++.. .++. -..|.+.|.... ..|..+.... ....+     +.+  .+..-...
T Consensus         7 ~p~~P~~-~~C~S~~~etftC~W~~g~-~~~l-~~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~   82 (104)
T PF09067_consen    7 PPEKPEN-LKCFSREMETFTCFWEPGS-EGNL-PTNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVP   82 (104)
T ss_dssp             HCCCCEE-EEEEBSSSS-EEEEEEEES-SSTS-TCEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSE
T ss_pred             CCCCCcc-CccCCCCCCcEEEEeeCCC-CCCC-CCcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEE
Confidence            4666666 6777777889999999643 3332 344999998776 7788887542 12233     444  47899999


Q ss_pred             EEEEEEEEcCCCC
Q psy7040         294 YKFRVRAVNKQGK  306 (716)
Q Consensus       294 y~~~v~a~n~~g~  306 (716)
                      |.++|.|.|..|.
T Consensus        83 y~i~V~a~~~~~~   95 (104)
T PF09067_consen   83 YCIQVEATNALGS   95 (104)
T ss_dssp             EEEEEEEEETTEE
T ss_pred             EEEEEEeccCCCc
Confidence            9999999997764

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>KOG4228|consensus

Probab=88.26  E-value=6.5  Score=43.94  Aligned_cols=104  Identities=19%  Similarity=0.083  Sum_probs=67.9

Q ss_pred             EEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCc
Q psy7040         199 FYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG  278 (716)
Q Consensus       199 ~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~  278 (716)
                      .|+|.+....|.....+.+.+..-|..+.. ..+......+..+.|.....    ....|.+..+..... +.....  .
T Consensus         1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~-~~vt~~~~~~~~~~~~~~~t----~~~~y~v~~~~~~s~-~~~~~~--~   72 (1087)
T KOG4228|consen    1 NYTCLARSGLGPGELITYVRVNGGPPGPST-PNVTGSTATSWVQAELLGST----WPNYYQVIFKALSSG-YGYIDV--D   72 (1087)
T ss_pred             CeeeeecccCCCccceEEEEecCCCCCCCC-cccccccccceeehhhccCC----ChhhhheeeeEeccC-cceeec--c
Confidence            489999999998888888888877766665 57777778888888886332    456676666554433 222222  1


Q ss_pred             ccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcc
Q psy7040         279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTT  312 (716)
Q Consensus       279 ~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~  312 (716)
                      ....+....+.+.+.+.+  .+.|..|.+..+..
T Consensus        73 ~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~  104 (1087)
T KOG4228|consen   73 LTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCP  104 (1087)
T ss_pred             ceeecccCCCCCcchhhh--hhcccccccccccc
Confidence            234466666777777766  66676665544443

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=88.06  E-value=4.6  Score=31.02  Aligned_cols=67  Identities=9%  Similarity=-0.001  Sum_probs=39.2

Q ss_pred             eEEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEE--eCCC---eEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         443 NFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIV--NDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       443 ~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      ...+.|.. .++|.+.++|+++...   .......  .++.   ...|.+.....++.-.|+|++.+..-......
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g---~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~   89 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGG---NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL   89 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCC---CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence            45678866 5899999999987211   1111111  1111   23555555555666788899988765444333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA02633 hypothetical protein; Provisional

Probab=87.98  E-value=1.8  Score=29.43  Aligned_cols=41  Identities=12%  Similarity=0.204  Sum_probs=34.2

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCC
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP  223 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p  223 (716)
                      ....|-|-+....|+|.|.|...|..-....+..+.|....
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            56679999999999999999999888777777777776544

>smart00407 IGc1 Immunoglobulin C-Type

Probab=87.93  E-value=7.8  Score=28.12  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=18.7

Q ss_pred             EEEEEEEecc-CC-CeEEEEeCCeEe
Q psy7040         444 FEFDINVIGE-PI-PTKEWLCNDITI  467 (716)
Q Consensus       444 ~~~~~~v~~~-p~-~~~~W~~~~~~~  467 (716)
                      +.|.|.+.+. |. ..+.|++++..+
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~   27 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEV   27 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEEC
Confidence            4788999776 44 589999999864

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=87.69  E-value=0.81  Score=35.56  Aligned_cols=33  Identities=15%  Similarity=0.005  Sum_probs=25.8

Q ss_pred             eEEEEecCCccEEEEeccccCcceEEEEEEEeC
Q psy7040         175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENI  207 (716)
Q Consensus       175 ~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  207 (716)
                      ++..........|+|.++++.|+|.|.|.+.+.
T Consensus        53 rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          53 RFSGSKSGNTASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             CEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence            444444455678999999999999999988753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=87.24  E-value=2.3  Score=36.79  Aligned_cols=49  Identities=12%  Similarity=0.089  Sum_probs=36.1

Q ss_pred             eEE-EEecCCccEEEEeccccCcceEEEEEEE-eCCC-CceeEEEEEEecCC
Q psy7040         175 VRK-VQHLDYNTKLGVRMAQRADAGFYTVTAE-NING-KDSVEVEVIVLDKP  223 (716)
Q Consensus       175 ~~~-~~~~~~~~~l~i~~l~~~~~g~y~c~a~-n~~g-~~~~~~~~~v~~~p  223 (716)
                      |+. +...-....++|.+++..|+|.|+|... -..| ..+....|+|.+.-
T Consensus        74 Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987         74 KIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             eEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEchh
Confidence            444 2334457899999999999999999654 3456 67788888887543

>KOG4806|consensus

Probab=87.01  E-value=29  Score=33.21  Aligned_cols=123  Identities=14%  Similarity=0.092  Sum_probs=70.1

Q ss_pred             EcCCCCCCeEEEEEEEEcCCCCCccceeee---------ccCCCCCCccceeec--cceeEEEEE-----EeeEEEEeee
Q psy7040         574 IRPLQRSDTAQYTVTATNSQGKDQVFIEVV---------VTDKPSAPEGPIQWL--LTLTDVTWE-----ISNYLQELHS  637 (716)
Q Consensus       574 i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~---------v~~~p~~~~~~~~~~--~~~v~l~w~-----i~~y~v~~~~  637 (716)
                      -..+.++..|.++++..|..- +.....+-         .|..|..-. +..+.  =+++++.|.     -..|=|..+.
T Consensus       288 Qfvv~~~~~~~~rf~~~ndde-~~~~v~V~aSt~~t~~~~P~LP~dTt-Vk~v~r~CSsAtIaW~gs~d~~~kyCIy~~~  365 (454)
T KOG4806|consen  288 QFVVLPGERYLMRFEPSNDDE-ALQKVMVAASTEATFRDLPELPQDTT-VKNVRRRCSSATIAWNGSPDEELKYCIYVFN  365 (454)
T ss_pred             EEEecCCCceEEEEEecCCch-hhheeEeeeecccccCcCCCCCCCce-EeeeccccchheeeeccCcchheeEEEEEec
Confidence            345678889999999888542 21111111         244454444 45554  458899998     2234333332


Q ss_pred             e----------ccCcee----------eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040         638 S----------LMPISL----------ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  697 (716)
Q Consensus       638 ~----------~~~~~~----------~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~  697 (716)
                      +          .-.|.|          -..|++.-+ -. .......+-+|.+|.|+.+|..-+.|.-..|....-..+.
T Consensus       366 ~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~-~q-~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyqa~~  443 (454)
T KOG4806|consen  366 LPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRE-RQ-QSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQALT  443 (454)
T ss_pred             ccchhhhhhhhhccccCccccceeEEEeEEEecChh-hh-cchhhhhhhhhcccccCceEEEEEEEcccCCccccceeEE
Confidence            1          111111          223555421 11 1122335668999999999999999988888776666666


Q ss_pred             Eec
Q psy7040         698 VTD  700 (716)
Q Consensus       698 v~~  700 (716)
                      |.+
T Consensus       444 v~t  446 (454)
T KOG4806|consen  444 VHT  446 (454)
T ss_pred             EEe
Confidence            554

>PHA03376 BARF1; Provisional

Probab=86.93  E-value=4.8  Score=34.75  Aligned_cols=44  Identities=11%  Similarity=-0.014  Sum_probs=32.2

Q ss_pred             ceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEE
Q psy7040         174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEV  217 (716)
Q Consensus       174 ~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~  217 (716)
                      +++.+....++.+|.|.+++..|.|.|+|...-........-.+
T Consensus        76 GrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehL  119 (221)
T PHA03376         76 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL  119 (221)
T ss_pred             cEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCCceeeeeee
Confidence            45556556688999999999999999999888655443333333

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=86.79  E-value=7.4  Score=29.93  Aligned_cols=63  Identities=11%  Similarity=0.083  Sum_probs=37.2

Q ss_pred             eEEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEEeCCC-----eEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         443 NFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       443 ~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      .....|.. .++|.+.+.|+++..   ...........+     ...|.+.-...++.-.|+|.+.+..-..
T Consensus        17 ~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          17 VTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             cEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            34667877 799999999999721   111111111111     2355555555556678889888766443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=86.74  E-value=1.5  Score=30.39  Aligned_cols=51  Identities=20%  Similarity=0.314  Sum_probs=34.1

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      .|..+.++|....   ..+.|.+++......          ...+.+.+.. ++.|.|.|.+.+.
T Consensus         6 sGTtVtlTCP~~~---~~i~W~~n~~~~~g~----------~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           6 SGTTVTVTCPLSG---DDIKWKKNDQVSQGS----------DEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             eccEEEEECCCCC---CCceEEeCCccCCCC----------CceEEeeccC-CCCceEEEEeCCC
Confidence            5778889996442   238999998654332          2244455555 7899999999543

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=86.74  E-value=4.3  Score=31.28  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=27.7

Q ss_pred             eEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEEe
Q psy7040         664 TKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVT  699 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v~  699 (716)
                      ..|.|+.+++.|+|.|-...+|..|.. ...+.|.|.
T Consensus        71 laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   71 LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            789999999999999999999999987 333445543

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=86.51  E-value=0.93  Score=35.87  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=25.1

Q ss_pred             eEEEEecCCccEEEEeccccCcceEEEEEEEeC
Q psy7040         175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENI  207 (716)
Q Consensus       175 ~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  207 (716)
                      ++.+........|+|.++++.|+|.|.|.+.+.
T Consensus        61 r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          61 RFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            344433345678999999999999999998754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=86.35  E-value=3.7  Score=31.66  Aligned_cols=38  Identities=32%  Similarity=0.426  Sum_probs=29.4

Q ss_pred             CCccEEEEeccccCcceEEEEEEEeCCCCc-eeEEEEEE
Q psy7040         182 DYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIV  219 (716)
Q Consensus       182 ~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~~~v  219 (716)
                      ..+..|.|+.+++.|+|.|.+...|..|.. ...+++.|
T Consensus        68 ~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   68 SENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             ccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            357899999999999999999999999984 44455554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=86.31  E-value=1  Score=46.89  Aligned_cols=123  Identities=14%  Similarity=0.174  Sum_probs=0.0

Q ss_pred             CeEEe--cCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccc--cEEEecCCeEEEEEEEeccC---
Q psy7040         382 PKGKV--LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLS--DIKVRAGSNFEFDINVIGEP---  454 (716)
Q Consensus       382 ~~~~i--~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~--~~~~~~g~~~~~~~~v~~~p---  454 (716)
                      ..+.|  ..|.++..|.|++......+..........+..   ..+|.+......  ...+..++.+.|...+...+   
T Consensus       148 ~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~---~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~  224 (440)
T PF02010_consen  148 SSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVS---GDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDS  224 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEecc---CCCCceeEccccccccccCCCCCEEEEEEEeCCCCcC
Confidence            34444  668999999999999877653322222222211   123433322111  12366676777766665322   


Q ss_pred             -CCeEEEEe--------CCeEeccCCcEEEEeCCCeEEEEEC--CCCCCCceeEEEEEEcCCCce
Q psy7040         455 -IPTKEWLC--------NDITIISKDRFKIVNDDKSTKLKVF--DSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       455 -~~~~~W~~--------~~~~~~~~~~~~~~~~~~~~~l~i~--~l~~~~~~~y~~~a~n~~g~~  508 (716)
                       ...+.|..        ....+.... ...........|.|.  .|.++..|.+++.+.+..+..
T Consensus       225 ~~~~y~Wsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~  288 (440)
T PF02010_consen  225 SNVSYSWSLFSLDGVSDSNSELPDWS-SMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSS  288 (440)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             CCEEEEEEEeeccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence             23567876        011110000 011111223455554  578888999999999887654

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=86.30  E-value=2  Score=32.83  Aligned_cols=47  Identities=11%  Similarity=0.070  Sum_probs=26.1

Q ss_pred             eccCcee------eEEEEeCCeEeeecc---------cceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040         638 SLMPISL------ESQYLMNDKRVTIDN---------VDYFTKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       638 ~~~~~~~------~~~W~~~~~~~~~~~---------~~~~~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      |.|.+.|      .+.|.+||+.+. +.         ..+-....-..+.+++.-.|+|.+.-
T Consensus        20 L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H   81 (93)
T cd05770          20 LNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRH   81 (93)
T ss_pred             EEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEE
Confidence            4555555      789999999876 41         11111222223345555667777655

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=86.23  E-value=1.2  Score=35.44  Aligned_cols=26  Identities=15%  Similarity=0.235  Sum_probs=22.9

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCC
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENIN  208 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~  208 (716)
                      ....|.|.+++++|+|.|.|.+.+..
T Consensus        70 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          70 TRSSLTIKSAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             CccEEEECCCChhhCEEEEEEeeCCC
Confidence            46789999999999999999998654

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=85.82  E-value=1.9  Score=33.08  Aligned_cols=14  Identities=29%  Similarity=0.242  Sum_probs=11.3

Q ss_pred             eEEEEeCCeEeeec
Q psy7040         645 ESQYLMNDKRVTID  658 (716)
Q Consensus       645 ~~~W~~~~~~~~~~  658 (716)
                      .+.|.++|.++..+
T Consensus        33 ~v~W~~~g~~~~~~   46 (94)
T cd05767          33 NVTWLKNGVPVTDG   46 (94)
T ss_pred             EEEEEECCeEccCc
Confidence            78999999987553

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=85.80  E-value=2.4  Score=32.48  Aligned_cols=61  Identities=11%  Similarity=0.118  Sum_probs=31.6

Q ss_pred             ceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeec---------ccceeeEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040         620 TLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTID---------NVDYFTKITIRPLQRSDTAQYTVTATNSQG  688 (716)
Q Consensus       620 ~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~---------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G  688 (716)
                      ..+.|.+.+.||.=.-  +      .++|.++|+.+...         ..+.-.......+.+.+...|+|.+.+..-
T Consensus        15 ~~~~L~C~a~gF~P~~--i------~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          15 GSLTLSCHATGFYPRD--I------EVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL   84 (93)
T ss_pred             CcEEEEEEEEEEeCCC--c------EEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            4566555555542210  0      78999999643222         011112222333444577788888877543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=85.40  E-value=1.9  Score=33.63  Aligned_cols=29  Identities=14%  Similarity=0.221  Sum_probs=22.3

Q ss_pred             cCCeEEEEEEEecc-C-CCeEEEEeCCeEec
Q psy7040         440 AGSNFEFDINVIGE-P-IPTKEWLCNDITII  468 (716)
Q Consensus       440 ~g~~~~~~~~v~~~-p-~~~~~W~~~~~~~~  468 (716)
                      .+..+.|.|.+.+. | ...+.|++++..+.
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~   46 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKVDGATVS   46 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence            45667999999774 4 35789999998874

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=85.00  E-value=5.6  Score=27.91  Aligned_cols=39  Identities=28%  Similarity=0.633  Sum_probs=27.7

Q ss_pred             CCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCC
Q psy7040          98 TGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP  138 (716)
Q Consensus        98 ~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~  138 (716)
                      .+.|........ .+.+.+|.|| .|.++|+|.+..|....
T Consensus        18 d~~W~~~~~~~~-~~~~~~L~~G-~Y~l~V~a~~~~~~~~~   56 (66)
T PF07495_consen   18 DDEWITLGSYSN-SISYTNLPPG-KYTLEVRAKDNNGKWSS   56 (66)
T ss_dssp             ESSEEEESSTS--EEEEES--SE-EEEEEEEEEETTS-B-S
T ss_pred             CCeEEECCCCcE-EEEEEeCCCE-EEEEEEEEECCCCCcCc
Confidence            467887765432 8999999999 89999999998875443

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=84.85  E-value=2.5  Score=32.43  Aligned_cols=14  Identities=14%  Similarity=0.214  Sum_probs=11.5

Q ss_pred             eEEEEeCCeEeeec
Q psy7040         645 ESQYLMNDKRVTID  658 (716)
Q Consensus       645 ~~~W~~~~~~~~~~  658 (716)
                      .+.|+++|+++...
T Consensus        32 ~v~W~~~g~~~~~~   45 (94)
T cd05766          32 TVKWFKNGQEETEG   45 (94)
T ss_pred             EEEEEECCeecCCC
Confidence            78999999987653

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=84.61  E-value=1.6  Score=35.44  Aligned_cols=27  Identities=30%  Similarity=0.149  Sum_probs=22.8

Q ss_pred             cCCccEEEEeccccCcceEEEEEEEeC
Q psy7040         181 LDYNTKLGVRMAQRADAGFYTVTAENI  207 (716)
Q Consensus       181 ~~~~~~l~i~~l~~~~~g~y~c~a~n~  207 (716)
                      ...+.+|+|.+++..|+|.|.|.....
T Consensus        76 ~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          76 GKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             CCCEEEEEEccCChhhCeEEEEEEEcC
Confidence            345678999999999999999988653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>smart00406 IGv Immunoglobulin V-Type

Probab=84.17  E-value=1.1  Score=33.02  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             CCccEEEEeccccCcceEEEEE
Q psy7040         182 DYNTKLGVRMAQRADAGFYTVT  203 (716)
Q Consensus       182 ~~~~~l~i~~l~~~~~g~y~c~  203 (716)
                      .....|.|.+++..|+|.|.|.
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       59 KNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEc
Confidence            4567899999999999999995

>PHA02633 hypothetical protein; Provisional

Probab=83.83  E-value=3.3  Score=28.20  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=33.5

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                      ...|.|......|+|.|.|...|..=...-+..|.|....
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            3678899999999999999999976666778888887654

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=82.80  E-value=1.8  Score=34.90  Aligned_cols=33  Identities=9%  Similarity=0.034  Sum_probs=25.7

Q ss_pred             ceEEEEecC--CccEEEEeccccCcceEEEEEEEe
Q psy7040         174 MVRKVQHLD--YNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       174 ~~~~~~~~~--~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      .|+.+....  ....|+|.++++.|+|.|.|.+..
T Consensus        64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence            345555444  567899999999999999998864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=82.14  E-value=7.1  Score=29.49  Aligned_cols=52  Identities=13%  Similarity=0.126  Sum_probs=34.0

Q ss_pred             eccCcee-----eEEEEeCCeEeeec---------cc--ceeeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTID---------NV--DYFTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~---------~~--~~~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                      +.|.+.+     .+.|+.++..+...         ..  .....|.+.--..++.-.|+|.|.|..-.
T Consensus        19 ~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   19 LTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             EEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             EEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            6676665     99999998877111         11  11245666544455778999999997543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=81.85  E-value=14  Score=27.49  Aligned_cols=31  Identities=23%  Similarity=0.238  Sum_probs=23.3

Q ss_pred             cCCeEEEEEEEeccCCC--eEEEEeCCeEeccC
Q psy7040         440 AGSNFEFDINVIGEPIP--TKEWLCNDITIISK  470 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~--~~~W~~~~~~~~~~  470 (716)
                      .+..+.|.|.+.+.-+.  .+.|.+++..+...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~   39 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEG   39 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeee
Confidence            36788999999765433  68999999887543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=81.41  E-value=2.7  Score=31.33  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=24.4

Q ss_pred             eEEEEeCCeEeeec------c---ccee---eEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040         645 ESQYLMNDKRVTID------N---VDYF---TKITIRPLQRSDTAQYTVTATNSQG  688 (716)
Q Consensus       645 ~~~W~~~~~~~~~~------~---~~~~---~~~~i~~l~~~~~y~y~~~a~n~~G  688 (716)
                      .+.|+++|..+...      .   .+.-   ..+.+.   .+....|+|.+.....
T Consensus        26 ~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen   26 TVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             EEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             EEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            78999999876543      0   1111   344444   4555578888776543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=80.69  E-value=2.3  Score=33.47  Aligned_cols=33  Identities=12%  Similarity=0.157  Sum_probs=26.0

Q ss_pred             ceEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       174 ~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      .++.+........|+|.+++..|+|.|.|.+.+
T Consensus        58 ~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          58 KRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             ceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            455554545667899999999999999998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=80.57  E-value=10  Score=30.12  Aligned_cols=45  Identities=16%  Similarity=0.307  Sum_probs=25.5

Q ss_pred             eEEEEeCCeEeeec-------ccc--ee--eEEEEccCCCCCcE-EEEEEEEcCCCCc
Q psy7040         645 ESQYLMNDKRVTID-------NVD--YF--TKITIRPLQRSDTA-QYTVTATNSQGKD  690 (716)
Q Consensus       645 ~~~W~~~~~~~~~~-------~~~--~~--~~~~i~~l~~~~~y-~y~~~a~n~~G~~  690 (716)
                      .++|++||+++...       ..+  +.  ..+.+. +...+.+ .|+|.+.......
T Consensus        39 ~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l~~   95 (111)
T cd05772          39 TVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTLQA   95 (111)
T ss_pred             EEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCCCC
Confidence            78999999987543       111  11  223332 3344444 4888888865433

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=80.56  E-value=14  Score=29.31  Aligned_cols=35  Identities=11%  Similarity=0.046  Sum_probs=26.5

Q ss_pred             EEeCCeEeeecccceeeEEEEccCCCCCcEEEEEE
Q psy7040         648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT  682 (716)
Q Consensus       648 W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~  682 (716)
                      |.++.-....+...++..|+|.+|+.+|...|.|.
T Consensus        58 ~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca   92 (115)
T cd05721          58 TSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCK   92 (115)
T ss_pred             ccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEE
Confidence            44444444444556668999999999999999998

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	716
3lpw_A	197	Crystal Structure Of The Fniii-Tandem A77-A78 From		3e-23
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		3e-15
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		3e-10
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		5e-06
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		1e-11
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		9e-11
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		3e-09
2yux_A	120	Solution Structure Of 3rd Fibronectin Type Three Do		1e-08
1bpv_A	112	Titin Module A71 From Human Cardiac Muscle, Nmr, 50		2e-08
1bpv_A	112	Titin Module A71 From Human Cardiac Muscle, Nmr, 50		2e-07
1bpv_A	112	Titin Module A71 From Human Cardiac Muscle, Nmr, 50		4e-06
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		9e-08
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		1e-07
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		7e-07
1uem_A	117	Solution Structure Of The First Fibronectin Type Ii		6e-06
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		1e-05
1wf5_A	121	Solution Structure Of The First Fn3 Domain Of Sidek		2e-05
1wf5_A	121	Solution Structure Of The First Fn3 Domain Of Sidek		9e-04
1uey_A	127	Solution Structure Of The First Fibronectin Type Ii		3e-05
1uey_A	127	Solution Structure Of The First Fibronectin Type Ii		3e-04
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-05
1x4z_A	121	Solution Structure Of The 2nd Fibronectin Type Iii		4e-05
1x4z_A	121	Solution Structure Of The 2nd Fibronectin Type Iii		2e-04
1wit_A	93	Twitchin Immunoglobulin Superfamily Domain (Igsf Mo		6e-05
2yuw_A	110	Solution Structure Of 2nd Fibronectin Domain Of Slo		7e-05
2cqv_A	114	Solution Structure Of The Eighth Ig-Like Domain Of		7e-05
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		7e-05
1fnh_A	271	Crystal Structure Of Heparin And Integrin Binding S		1e-04
3r8q_A	290	Structure Of Fibronectin Domain 12-14 Length = 290		1e-04
1x5y_A	111	Solution Structure Of The Fibronectin Type-Iii Doma		2e-04
2doc_A	119	Solution Structure Of The Fibronectin Type-Iii Doma		2e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-04
2crz_A	110	Solution Structure Of The Fifth Fniii Domain Of Hum		5e-04
2crm_A	120	Solution Structure Of The Forth Fniii Domain Of Hum		7e-04
2ibg_A	214	Crystal Structure Of Hedgehog Bound To The Fniii Do		8e-04
2ibb_A	213	Crystal Structure Of The First And Second Fniii Dom		9e-04

>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 101/202 (50%), Gaps = 7/202 (3%)
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
            +D P PP   LKV  V    VTL W  P  DGG  I+ Y+V+K  E+T +      T  
Sbjct: 2   AMDTPGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKR-ESTRKAYSTVATNC 59
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDT 338
             T  +V+ L     Y FRV A N+ G   P  T  S++A     +P  PG   + D   
Sbjct: 60  HKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE---RPLPPGKITLMDVTR 116
Query: 339 DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR 398
           + V L+W  PE +GGS I+GYI+E + K S  W  CA  +    +  +  LI+G +Y FR
Sbjct: 117 NSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVK--VTEATITGLIQGEEYSFR 174
Query: 399 VLAVNKGGPGEPSDPTAPHIAR 420
           V A N+ G  +P   + P IA+
Sbjct: 175 VSAQNEKGISDPRQLSVPVIAK 196

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 193 QRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGG 252
           +R DAGFY V A+N  G D   VE+ V D P PP G +KVS+V  + V L W  P  DGG
Sbjct: 169 ERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRG-VKVSDVSRDSVNLTWTEPASDGG 227
Query: 253 QPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
             I  Y+V+K      RW   G+     T   V  L     Y+FRV A NK G S+P
Sbjct: 228 SKITNYIVEKCATTAERWLRVGQARE--TRYTVINLFGKTSYQFRVIAENKFGLSKP 282

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P   ++ D   D V L WT P  +GGS I  YI+EK    +  W +  Q      + 
Sbjct: 199 PDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR--ETRY 256
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 423
            V++L     Y+FRV+A NK G  +PS+P+ P I +  K
Sbjct: 257 TVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDK 295

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 88/237 (37%), Gaps = 44/237 (18%)
Query: 397 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 456
           ++V A N+GG    S   +  +    K+      + +  +    G      I   G+P P
Sbjct: 77  YQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 457 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS--KRGDSGIYTLAVKNSWGTDKGTAKV 514
              W      I +   ++++     T L VF +  +R D+G Y +  KN +G D+ T ++
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSL-VFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 515 TVL-----------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTN 557
            V                    +L W  P  DGG+ I  Y+VEK  T       +W+R  
Sbjct: 194 DVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAE----RWLRVG 249
Query: 558 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
             R         T+ T+  L    + Q+ V A N  G            KPS P  P
Sbjct: 250 QARE--------TRYTVINLFGKTSYQFRVIAENKFG----------LSKPSEPSEP 288

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
           +P  P  P I++   + V L+W PP  +GGS +  Y IEK+E     W  CA++      
Sbjct: 9   EPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSR--YTY 66
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
             +  L  G QYEFR++A NK G  +P +PTAP
Sbjct: 67  TTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAP 99

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 18/222 (8%)
Query: 196 DAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI 255
           D G Y  TA N  G    E  + + D PS P G +K+  +      + +  PD  GG PI
Sbjct: 169 DFGRYNCTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPI 227
Query: 256 EKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE----PLT 311
             Y VD  + A+  W     + G  T + +  L PN  Y+ RV AVN +G+ +     + 
Sbjct: 228 HHYQVDVKEVASEIWKIV-RSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF 286
Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIE--KKEKYSP 369
            T  +   +P +  G+P +   K F     +      + +GG+PI+ YI++   K+K   
Sbjct: 287 QTLPVREPSPPSIHGQPSSG--KSFKLSITK------QDDGGAPILEYIVKYRSKDKEDQ 338
Query: 370 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
             EK  Q   D    + L    G  YE ++ A N+ G  EP+
Sbjct: 339 WLEKKVQGNKDHIILEHLQWTMG--YEVQITAANRLGYSEPT 378

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 89/197 (45%), Gaps = 29/197 (14%)
Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 489
           R ++ D+  + G   +    ++G P+P  +W      +I   ++K+ +D ++  L V   
Sbjct: 11  RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTE 70
Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
           ++ D G+YT    N  G  + ++K+ +L  + +++P     G P++    EK     G  
Sbjct: 71  EQEDEGVYTCIATNEVGEVETSSKL-LLQATPQFHP-----GYPLK----EKYYGAVGST 120
Query: 550 L-------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTA-QYTVTAT 590
           L             + W        N + +TI+N +++T + ++ +QR   A +Y V  +
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
Query: 591 NSQGKDQVFIEVVVTDK 607
           N  G     ++V + DK
Sbjct: 181 NVFGTVDAILDVEIQDK 197

>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of Slow Type Myosin-Binding Protein C Length = 120

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 322 FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT 381
            ++PG P   +I+D   + V L WTPP+ +G + I GY I+K +K S  W    +    T
Sbjct: 15  IDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRT 74
Query: 382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT--APHIARAKKV 424
               + +L+ GN+Y FRV + N  G  E +  T  +  IAR  K+
Sbjct: 75  -SATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKI 118

>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures Length = 112

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR--EPEM 112
           +DP G     NI +   TLKW KP+  GG  +  Y+VEK D   G W+    +   E E 
Sbjct: 11  IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 113 DVTGLTPGHEYKFRVKALNKEGE-SEPLETFSSIIARD 149
            V+GLT    Y+FRV A N  G  S P E   +I  RD
Sbjct: 71  TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRD 108

>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures Length = 112

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
           PPG P+ + N+    VTL W  P+  GG  I  Y+V+K D   GRW  A  +        
Sbjct: 13  PPGKPVPL-NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71
Query: 285 VEGLIPNHKYKFRVRAVNKQGKSEP 309
           V GL  +  Y+FRV A N  G   P
Sbjct: 72  VSGLTEDAAYEFRVIAKNAAGAISP 96

>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures Length = 112

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG 379
           +P + PGKP    I       V L W  PE  GG  I  YI+EK++  +  W K   +  
Sbjct: 9   SPIDPPGKPVPLNITRHT---VTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 65
Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGG----PGEPSD 412
              +  V  L E   YEFRV+A N  G    P EPSD
Sbjct: 66  LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSD 102

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKR 491
           SDI +  G          GEP P   W C    I S++  RF I N D  T L + D ++
Sbjct: 13  SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK 72
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            D G+YTL++ N +G+D  T  + +
Sbjct: 73  QDGGLYTLSLGNEFGSDSATVNIHI 97

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKR 491
           SDI +  G          GEP P   W C    I S++  RF I N D  T L + D ++
Sbjct: 15  SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK 74
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            D G+YTL++ N +G+D  T  + +
Sbjct: 75  QDGGLYTLSLGNEFGSDSATVNIHI 99

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 196 DAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI 255
           D G Y  TA N  G    E  + + D PS P G +K+  +      + +  PD  GG PI
Sbjct: 169 DFGRYNCTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPI 227
Query: 256 EKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
             Y VD  + A+  W     + G  T + +  L PN  Y+ RV AVN +G+ +
Sbjct: 228 HHYQVDVKEVASEIWKIV-RSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGD 279

>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa1568 Protein Length = 117

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
           D P PP  P +V++V    VTL W+ P   G  P   Y+++   ++              
Sbjct: 14  DLPGPPSKP-QVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKT 71
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
           T   V GL PN  Y F VRA+N QG S+P
Sbjct: 72  TLYTVRGLRPNTIYLFMVRAINPQGLSDP 100

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
           L D  V + S  +F +   GEP PT  W  +   I    ++K+  D     L++  +   
Sbjct: 13  LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTV 516
           DSG+YT  VKNS G+   + K+T+
Sbjct: 73  DSGLYTCTVKNSAGSVSSSCKLTI 96

>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2 Protein Length = 121

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 219 VLDKPSPPGGPLK-VSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277
           V   P  P  P+  +S V    + L W  P D G  P+ +Y+++ M E    WT    + 
Sbjct: 14  VRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILE-MSENNAPWTVLLASV 71
Query: 278 GP-VTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
            P  T + V+GL+P   Y+FR+ AVN  GK +
Sbjct: 72  DPKATSVTVKGLVPARSYQFRLCAVNDVGKGQ 103

>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2 Protein Length = 121

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 400
           + L WT P  +G SP++ YI+E  E  +P     A  +       V  L+    Y+FR+ 
Sbjct: 36  INLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLC 94
Query: 401 AVNKGGPGEPSDPT 414
           AVN  G G+ S  T
Sbjct: 95  AVNDVGKGQFSKDT 108

>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa0343 Protein Length = 127

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMD--EATGRWTPAGET 276
           V D P+PP   L++++   + V L W  P DD   PI K++++  D     G W    E 
Sbjct: 13  VYDVPNPPFD-LELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEV 70
Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP------LTTTASIEAKNPFNQP 325
            G  T  ++  L P   Y FRV AVN  GKS P        T AS   KNP + P
Sbjct: 71  SGTQTTAQLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGP 124

>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa0343 Protein Length = 127

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 322 FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK-YSP-IWEKCAQTEG 379
           ++ P  P   E+ D     V+L+WTP + N  SPI  +IIE ++  + P +W    +  G
Sbjct: 14  YDVPNPPFDLELTDQLDKSVQLSWTPGDDNN-SPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 423
            T     L+L     Y FRV+AVN  G   PS+ +  ++ +A +
Sbjct: 73  -TQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASE 115

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
           S++      + EF+  V G+P+PT  W+ N   +I  D F+IV     + L++    + D
Sbjct: 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG---GSNLRILGVVKSD 376
Query: 494 SGIYTLAVKNSWGTDKGTAKVTV 516
            G Y    +N  G  + +A++ V
Sbjct: 377 EGFYQCVAENEAGNAQSSAQLIV 399

>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain From Mouse Biregional Cell Adhesion Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding Protein Length = 121

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE-KYDPETGVWIPVGKTREPE-- 111
           PE P    +S   +    + W  P+ +GG P++ + VE K   + G WI       P   
Sbjct: 18  PEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 112 -MDVTGLTPGHEYKFRVKALNKEGESEP 138
            +++TGL  G  YKFRV+ALN  GESEP
Sbjct: 77  SVEITGLEKGISYKFRVRALNMLGESEP 104

>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain From Mouse Biregional Cell Adhesion Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding Protein Length = 121

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 224 SPPGGPLK--VSNVHAEGVTLDWKVPDDDGGQPIEKYVVD-KMDEATGRWTPAGETEGPV 280
           SPP  P +  +S      V + W +P  +GG PI+ + V+ K  +  G W  A     P 
Sbjct: 16  SPPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPS 74
Query: 281 -TGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
              +E+ GL     YKFRVRA+N  G+SEP
Sbjct: 75  RLSVEITGLEKGISYKFRVRALNMLGESEP 104

>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module) (Ig 18'), Nmr, Minimized Average Structure Length = 93

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF--DSKRGD 493
           IK++AG     +++ IG P PT  W   D          +  D KS+   +F   +KR D
Sbjct: 12  IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLV--DAKSSTTSIFFPSAKRAD 69
Query: 494 SGIYTLAVKNSWGTDKGTAKVTV 516
           SG Y L VKN  G D+   +V V
Sbjct: 70  SGNYKLKVKNELGEDEAIFEVIV 92

>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type Myosin-Binding Protein C Length = 110

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLI 289
           L V +V    VT+ W+ PD  G   ++ YV++   E T  W  A +     T   + GL 
Sbjct: 14  LTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLP 73
Query: 290 PNHKYKFRVRAVNKQGKSEP 309
            + K   RV+AVN  G SEP
Sbjct: 74  TDAKIFVRVKAVNAAGASEP 93

>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human Myosin Light Chain Kinase Length = 114

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDS 494
           D KVRAG + E    V G    T  W+     I   +  K+ N +  +KL +  +++   
Sbjct: 16  DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHC 75
Query: 495 GIYTLAVKNSWGTDKGTAKVTVL 517
           G YTL V+N  G+ +    +TV+
Sbjct: 76  GCYTLLVENKLGSRQAQVNLTVV 98

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTK 483
           +P   +  L D  VR G +    I V GEP P   WL N   +   + RF    +    +
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
           L++  ++RGD+G YT    N +G  +  A++ V G
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment Of Human Fibronectin Length = 271

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 21/224 (9%)
Query: 188 GVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVP 247
           G+ +A + +   Y +  + +  + +  V V  L+  SPP    +V++     +T+ W+  
Sbjct: 61  GLMVATKYEVSVYAL-KDTLTSRPAQGV-VTTLENVSPPRR-ARVTDATETTITISWRTK 117
Query: 248 DDDGGQPIEKYVVDKMDEATGRWTPAGETEGP-VTGLEVEGLIPNHKYKFRVRAVNKQGK 306
            +     I  + VD +  A G+ TP   T  P V    + GL P   YK  +  +N   +
Sbjct: 118 TET----ITGFQVDAV-PANGQ-TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNAR 171
Query: 307 SEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK 366
           S P+   AS     P N      TP       + + ++W PP       I GYII+ ++ 
Sbjct: 172 SSPVVIDASTAIDAPSNLRFLATTP-------NSLLVSWQPPRAR----ITGYIIKYEKP 220
Query: 367 YSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 410
            SP  E   +      +  +  L  G +Y   V+A+      EP
Sbjct: 221 GSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP 264

>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14 Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 21/224 (9%)
Query: 188 GVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVP 247
           G+ +A + +   Y +  + +  + +  V V  L+  SPP    +V++     +T+ W+  
Sbjct: 80  GLMVATKYEVSVYAL-KDTLTSRPAQGV-VTTLENVSPPRR-ARVTDATETTITISWRTK 136
Query: 248 DDDGGQPIEKYVVDKMDEATGRWTPAGETEGP-VTGLEVEGLIPNHKYKFRVRAVNKQGK 306
            +     I  + VD +  A G+ TP   T  P V    + GL P   YK  +  +N   +
Sbjct: 137 TET----ITGFQVDAV-PANGQ-TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNAR 190
Query: 307 SEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK 366
           S P+   AS     P N      TP       + + ++W PP       I GYII+ ++ 
Sbjct: 191 SSPVVIDASTAIDAPSNLRFLATTP-------NSLLVSWQPPRAR----ITGYIIKYEKP 239
Query: 367 YSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 410
            SP  E   +      +  +  L  G +Y   V+A+      EP
Sbjct: 240 GSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP 283

>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of Mouse Myosin-Binding Protein C, Fast-Type Homolog Length = 111

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 242 LDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV 301
           L W+ PD  G   I+ Y+V+   E +  W PA +      G  V+ L    +  FRV  V
Sbjct: 27  LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 302 NKQGKSEPLT 311
           N  G+SEP T
Sbjct: 87  NIAGRSEPAT 96

>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of Human Neural Cell Adhesion Molecule 2 Length = 119

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
           +G    E  + + D PS P G +K+  +      + +  PD  GG PI  Y VD  + A+
Sbjct: 3   SGSSGQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS 61
Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
             W     + G  T + +  L PN  Y+ RV AVN +G+ +
Sbjct: 62  EIWKIV-RSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGD 101

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
           +SD +   GSN  +     G+P PT  WL N   + S++R +++  D    L+       
Sbjct: 300 ISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGD----LRFSKLSLE 355
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTV 516
           DSG+Y    +N  GT   +A++ V
Sbjct: 356 DSGMYQCVAENKHGTIYASAELAV 379

>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human Fibronectin Type Iii Domain Containing Protein 3a Length = 110

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)
Query: 73  LKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNK 132
           L+W  P  DGG P+  Y VE    E      V +  E E  V+ L PG  Y FR++A NK
Sbjct: 28  LRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANK 87
Query: 133 EG 134
            G
Sbjct: 88  MG 89

>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human Length = 120

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 66  IHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-VW--IPVGKTREPEMDVTGLTPGHE 122
           IH     + W+ PKD+GG  +  Y+VE  +   G  W  I  G TRE   D   L PG  
Sbjct: 30  IHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDR--LNPGCF 87
Query: 123 YKFRVKALNKEGESEPLETF 142
           Y+ RV  ++  G+S   E+ 
Sbjct: 88  YRLRVYCISDGGQSAVSESL 107

>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains Of Ihog Length = 214

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 73/196 (37%), Gaps = 28/196 (14%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW------TPAGET 276
           P+PP     V+ +  E V L W VP +DG   +   V  +M      W       P G+ 
Sbjct: 5   PTPPN----VTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 277 E-----GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP 331
           +     G      V  L P H Y+FR+ AV     ++   T+A       + QPG    P
Sbjct: 61  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKF-----YLQPGAALDP 115
Query: 332 -------EIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
                  EI+++    V L W+         I GY    +   S      A  EG   + 
Sbjct: 116 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARS 175
Query: 385 -KVLDLIEGNQYEFRV 399
            K+  L     YEF++
Sbjct: 176 FKIAPLETATMYEFKL 191

>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of Ihog Length = 213

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 73/196 (37%), Gaps = 28/196 (14%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW------TPAGET 276
           P+PP     V+ +  E V L W VP +DG   +   V  +M      W       P G+ 
Sbjct: 5   PTPPN----VTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 277 E-----GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP 331
           +     G      V  L P H Y+FR+ AV     ++   T+A       + QPG    P
Sbjct: 61  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKF-----YLQPGAALDP 115
Query: 332 -------EIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
                  EI+++    V L W+         I GY    +   S      A  EG   + 
Sbjct: 116 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARS 175
Query: 385 -KVLDLIEGNQYEFRV 399
            K+  L     YEF++
Sbjct: 176 FKIAPLETATMYEFKL 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	716
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	7e-62
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-31
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-28
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	8e-25
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-18
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-18
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-13
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-05
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	6e-56
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	6e-28
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	3e-23
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	1e-20
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	1e-09
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	6e-54
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	3e-19
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	6e-16
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	2e-06
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	6e-06
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	1e-52
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	3e-19
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	8e-19
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	2e-15
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	3e-10
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	4e-41
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	7e-21
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	4e-12
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	5e-08
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	3e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-39
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-38
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	8e-25
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	9e-09
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	4e-04
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-39
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	1e-30
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	7e-24
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	7e-23
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	3e-11
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	1e-08
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	9e-39
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	6e-24
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	6e-23
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	9e-36
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	9e-35
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	7e-31
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	2e-16
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-35
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-28
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-24
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	9e-22
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	6e-35
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	8e-27
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	2e-25
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	3e-22
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	6e-05
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	3e-34
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	6e-18
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	7e-11
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	2e-09
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	5e-08
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-33
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-28
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	5e-23
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-16
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-13
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-11
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-32
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	6e-32
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-24
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-22
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-18
2crm_A	120	Fibronectin type-III domain containing protein 3A;	1e-31
2crm_A	120	Fibronectin type-III domain containing protein 3A;	1e-26
2crm_A	120	Fibronectin type-III domain containing protein 3A;	4e-23
2crm_A	120	Fibronectin type-III domain containing protein 3A;	2e-09
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	3e-31
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	2e-29
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	1e-24
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	5e-08
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-30
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-26
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-25
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-11
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	1e-29
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	1e-27
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	2e-23
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	2e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-29
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-26
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-23
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-21
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-15
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	4e-29
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	8e-26
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	4e-23
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	4e-10
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	6e-29
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	3e-26
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	2e-18
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	4e-05
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	3e-28
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	5e-13
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	4e-11
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	3e-28
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	7e-27
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	2e-24
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	9e-10
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-28
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-18
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-11
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-05
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-04
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	1e-27
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	1e-23
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	3e-22
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	3e-07
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	2e-27
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	2e-14
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	3e-14
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	7e-10
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	3e-08
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	2e-27
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	2e-24
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	2e-19
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	1e-26
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	5e-13
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	3e-12
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	7e-10
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	1e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-26
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-19
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-19
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-04
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	3e-26
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	1e-20
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	2e-16
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	3e-26
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	1e-25
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	2e-20
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	2e-04
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	3e-26
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	1e-22
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	2e-20
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	3e-04
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	7e-26
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	4e-25
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	6e-21
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	1e-07
2crz_A	110	Fibronectin type-III domain containing protein 3A;	2e-25
2crz_A	110	Fibronectin type-III domain containing protein 3A;	6e-25
2crz_A	110	Fibronectin type-III domain containing protein 3A;	1e-24
2crz_A	110	Fibronectin type-III domain containing protein 3A;	9e-08
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	3e-25
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	1e-13
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	1e-07
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	2e-04
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	3e-04
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	3e-25
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	1e-15
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	5e-07
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	8e-04
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	4e-25
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-05
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	3e-05
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-24
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	4e-23
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-16
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-23
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	9e-11
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-10
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-09
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	2e-23
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	9e-21
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	2e-16
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	9e-07
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-23
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-13
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-13
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-12
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	3e-23
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	3e-22
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-12
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	6e-06
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	7e-06
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	1e-04
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	3e-23
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	1e-22
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	2e-16
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	1e-04
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	1e-22
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	1e-17
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	1e-16
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-22
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-19
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-16
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-07
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-22
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-09
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-08
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-06
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	2e-22
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	4e-21
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	5e-15
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	2e-05
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-22
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-12
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-22
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-15
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-22
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-14
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-06
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	8e-22
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-13
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-09
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	1e-21
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	3e-21
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	1e-15
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	2e-04
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-21
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-15
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-08
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	3e-21
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	4e-21
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	7e-19
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	1e-04
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	6e-21
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	3e-18
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	3e-12
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-21
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-19
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-18
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-21
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-14
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-04
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	4e-20
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	4e-16
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	5e-14
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	6e-04
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-20
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-14
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-11
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-20
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-15
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-14
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-08
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-19
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-17
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	9e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-07
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	3e-19
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	3e-18
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	3e-17
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	4e-06
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	5e-19
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	1e-15
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	1e-13
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	7e-19
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	3e-18
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	3e-16
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	9e-19
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-19
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-14
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-18
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	1e-18
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	2e-05
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	6e-05
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-18
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-10
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-18
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	9e-15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-12
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-05
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-04
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-18
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-15
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	4e-18
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	6e-18
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	9e-16
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	4e-04
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-18
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-12
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-04
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-17
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-10
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	1e-17
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	1e-12
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	2e-11
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	2e-17
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	1e-14
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	3e-10
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	7e-04
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	2e-17
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	3e-09
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	3e-04
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	7e-04
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	5e-17
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-06
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-05
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-04
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	8e-17
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	5e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	7e-08
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	1e-16
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	2e-16
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	4e-16
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-16
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-11
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-05
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	3e-16
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	8e-12
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	3e-11
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-16
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-08
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-08
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-16
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-11
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-15
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-10
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-15
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	9e-06
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-15
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-09
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-15
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	3e-15
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	1e-13
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	7e-08
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	3e-15
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	4e-11
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	2e-08
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	3e-15
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	3e-13
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	2e-12
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	4e-15
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	1e-14
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	2e-09
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	6e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-15
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-13
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-10
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-05
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	8e-15
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	6e-12
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	6e-09
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	1e-14
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	8e-07
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	7e-04
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-14
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-05
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-04
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-04
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-14
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-05
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-05
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	1e-14
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	4e-12
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	3e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-07
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-04
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	2e-14
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	2e-14
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	2e-11
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	6e-11
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	3e-06
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	1e-05
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	2e-14
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	3e-05
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	9e-04
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-14
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-09
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-08
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	3e-14
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	3e-10
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	6e-14
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	2e-10
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	7e-06
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	7e-14
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	2e-13
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	2e-11
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	4e-04
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	9e-14
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	2e-11
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	3e-09
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-05
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-04
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	1e-13
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	5e-11
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	1e-07
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	3e-13
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	5e-13
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	4e-10
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-13
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	9e-11
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-04
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	3e-13
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	1e-11
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	2e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-13
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	8e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	5e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	7e-04
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	6e-13
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	1e-08
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	1e-08
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	9e-13
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-05
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	1e-12
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	2e-10
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	5e-09
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	1e-12
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	8e-10
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	4e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-12
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-08
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	1e-12
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	2e-09
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	2e-08
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-12
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-06
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-05
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	6e-05
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	1e-12
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	9e-11
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	2e-07
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	2e-12
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	2e-10
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	1e-07
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-12
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-04
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	2e-12
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	8e-08
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	3e-06
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	4e-06
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-12
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-10
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-04
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	2e-12
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	1e-09
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	2e-08
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-12
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-12
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-05
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	6e-05
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	4e-12
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	6e-10
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	9e-08
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-12
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-07
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-06
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-12
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-04
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	7e-04
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	5e-12
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	5e-12
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	6e-12
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-05
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	6e-12
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-07
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-07
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-12
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-09
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-09
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	1e-11
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	4e-11
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	3e-10
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-11
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-07
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-06
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-11
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	2e-11
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	2e-08
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	1e-05
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	2e-11
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	1e-10
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	5e-09
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-11
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-07
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-06
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-06
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-11
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-11
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-11
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-11
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	7e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-05
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-04
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	5e-11
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	4e-10
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	8e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-11
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-04
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	8e-11
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	3e-07
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	7e-05
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	4e-04
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	9e-11
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	9e-09
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-07
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	6e-07
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-10
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-05
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-05
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	1e-10
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	3e-09
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	6e-08
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	1e-10
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	6e-09
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	5e-07
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	1e-10
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	1e-09
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	3e-09
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-10
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-04
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	2e-10
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	5e-05
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	4e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-10
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	5e-10
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	1e-06
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	2e-06
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	5e-10
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	6e-10
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	6e-10
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-10
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	8e-08
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-05
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	8e-10
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-05
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	9e-10
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	4e-06
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	9e-10
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	2e-04
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-09
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-09
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	6e-09
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-04
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	2e-09
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	1e-06
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	6e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-09
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	9e-09
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-05
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-09
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-09
1y6k_R	214	Interleukin-10 receptor alpha chain; helix bundle,	3e-09
1y6k_R	214	Interleukin-10 receptor alpha chain; helix bundle,	2e-04
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-09
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	4e-09
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	6e-06
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	5e-05
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-09
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	8e-09
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	8e-09
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	9e-09
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	4e-05
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-07
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	1e-08
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	9e-04
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	1e-08
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	2e-06
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	3e-05
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-06
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-04
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	2e-08
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	3e-08
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	6e-06
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	2e-08
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	4e-04
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-08
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	8e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	6e-06
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-04
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	3e-08
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	3e-04
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-08
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	4e-08
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	2e-07
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	1e-05
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	4e-08
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	1e-06
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-08
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-07
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-05
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-05
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	8e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-07
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	1e-07
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	2e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-04
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	1e-07
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	9e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-05
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-07
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	2e-07
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	3e-05
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	2e-07
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	1e-06
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	5e-05
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-06
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	3e-07
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	8e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	3e-07
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	3e-07
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	9e-05
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-07
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-05
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-04
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-07
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-04
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	8e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	8e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-04
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	8e-07
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	2e-06
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-06
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-06
2ens_A	96	Advanced glycosylation END product-specific recept	2e-06
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-06
2erj_C	247	Cytokine receptor common gamma chain; immune syste	3e-06
2erj_C	247	Cytokine receptor common gamma chain; immune syste	8e-05
2erj_C	247	Cytokine receptor common gamma chain; immune syste	1e-04
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	3e-06
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	1e-04
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	3e-06
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-06
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-06
2dle_A	104	Receptor-type tyrosine-protein phosphatase ETA; pr	4e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	6e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-05
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	8e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-05
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	1e-05
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	2e-04
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	7e-04
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-04
3og6_B	226	Interleukin 28 receptor, alpha (interferon, lambd	2e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	8e-04
3dlq_R	211	Interleukin-22 receptor subunit alpha-1; cytokine-	2e-05
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	3e-05
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	8e-05
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	8e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	8e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	9e-05
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	1e-04
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	1e-04
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	4e-04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-04
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	7e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	7e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  211 bits (538), Expect = 7e-62
 Identities = 61/240 (25%), Positives = 95/240 (39%), Gaps = 6/240 (2%)

Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVH 236
           K         L +      D G Y  TA N  G    E  + + D PS P G  K+  + 
Sbjct: 150 KTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGV-KIIELS 208

Query: 237 AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKF 296
                + +  PD  GG PI  Y VD  + A+  W     + G  T + +  L PN  Y+ 
Sbjct: 209 QTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIV-RSHGVQTMVVLNNLEPNTTYEI 267

Query: 297 RVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPI 356
           RV AVN +G+ +       I    P  +P  P     +       +L+ T  +  GG+PI
Sbjct: 268 RVAAVNGKGQGDYSKI--EIFQTLPVREPSPPS-IHGQPSSGKSFKLSITKQDD-GGAPI 323

Query: 357 VGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
           + YI++ + K         + +G+     +  L     YE ++ A N+ G  EP+     
Sbjct: 324 LEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 383

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  126 bits (317), Expect = 2e-31
 Identities = 45/254 (17%), Positives = 88/254 (34%), Gaps = 34/254 (13%)

Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS----------PP 226
           +V+    ++ L ++  + +D+G Y   A +  G     + + +   P             
Sbjct: 55  EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWE 114

Query: 227 GGPLKVSNVHAEG---VTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
           G P+ +S    +     ++ W+         +       +            + G    L
Sbjct: 115 GNPINIS-CDVKSNPPASIHWRR----DKLVLPAKNTTNLKT---------YSTGRKMIL 160

Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVEL 343
           E+     N   ++   A N  G          +   +    P  P   +I +      ++
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGTR---FQEYILALADV---PSSPYGVKIIELSQTTAKV 214

Query: 344 AWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN 403
           ++  P+ +GG PI  Y ++ KE  S IW+   ++ G      + +L     YE RV AVN
Sbjct: 215 SFNKPDSHGGVPIHHYQVDVKEVASEIWKI-VRSHGVQTMVVLNNLEPNTTYEIRVAAVN 273

Query: 404 KGGPGEPSDPTAPH 417
             G G+ S      
Sbjct: 274 GKGQGDYSKIEIFQ 287

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  116 bits (291), Expect = 5e-28
 Identities = 51/316 (16%), Positives = 102/316 (32%), Gaps = 59/316 (18%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDK 480
           + +P    +Q +      G+      +V   P  +  W  + + + +K+    K  +  +
Sbjct: 98  EYAPKFISNQ-TIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR 156

Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG-----------------CSLKW 523
              L++  +   D G Y     N  GT      + +                     + +
Sbjct: 157 KMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSF 216

Query: 524 NPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTA 583
           N P+  GG PI +Y V+  E  +      W       V        T + +  L+ + T 
Sbjct: 217 NKPDSHGGVPIHHYQVDVKEVASE----IWKIVRSHGVQ-------TMVVLNNLEPNTTY 265

Query: 584 QYTVTATNSQGK-DQVFIEVVVTDKPSAPEGPIQWLLTLTD----VTWE--------ISN 630
           +  V A N +G+ D   IE+  T     P  P       +     ++          I  
Sbjct: 266 EIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILE 325

Query: 631 YLQE--LHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
           Y+ +           LE +   N   + ++++ +     ++           +TA N  G
Sbjct: 326 YIVKYRSKDKEDQW-LEKKVQGNKDHIILEHLQWTMGYEVQ-----------ITAANRLG 373

Query: 689 K-DQVFIEVVVTDKPS 703
             +    E  +  KP+
Sbjct: 374 YSEPTVYEFSMPPKPN 389

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  106 bits (265), Expect = 8e-25
 Identities = 50/304 (16%), Positives = 92/304 (30%), Gaps = 34/304 (11%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWL-------CNDITIISKDRFKIVNDDKSTKL 484
           QL +             +  GEPIP   W          +       R ++     S+ L
Sbjct: 6   QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65

Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMET 544
            + D K  DSG Y     +  G  + +  + +         P+         Y   +   
Sbjct: 66  HIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------YAPKFIS--NQTIYYSWEGNP 117

Query: 545 DTGKVL--------IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTA 589
                         I W R        N   +   +      + I P   +D  +Y  TA
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177

Query: 590 TNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT--WEISNYLQELHSSLMPISLESQ 647
           TN  G       + + D PS+P G     L+ T     +   +        +    ++ +
Sbjct: 178 TNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDS--HGGVPIHHYQVDVK 235

Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG 707
            + ++    + +    T + +  L+ + T +  V A N +G+       +    P     
Sbjct: 236 EVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPS 295

Query: 708 PIQI 711
           P  I
Sbjct: 296 PPSI 299

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 85.6 bits (212), Expect = 5e-18
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-REPEMDVT 115
           P G  ++  + +    + +NKP   GG P+  Y V+  +  + +W  V     +  + + 
Sbjct: 199 PYGV-KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLN 257

Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSK 153
            L P   Y+ RV A+N +G+ +  +    I    P  +
Sbjct: 258 NLEPNTTYEIRVAAVNGKGQGDYSK--IEIFQTLPVRE 293

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 85.6 bits (212), Expect = 6e-18
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 200 YTVTAENINGK----DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI 255
             V A N  G+         + + + +PSPP   +       +   L     DD GG PI
Sbjct: 267 IRVAAVNGKGQGDYSKIEIFQTLPVREPSPP--SIHGQPSSGKSFKLSITKQDD-GGAPI 323

Query: 256 EKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
            +Y+V    +         + +G    + +E L     Y+ ++ A N+ G SEP     S
Sbjct: 324 LEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 383

Query: 316 IEAK 319
           +  K
Sbjct: 384 MPPK 387

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 41  GEPLEGYLVEKDRGLDPEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG 99
           G+  +  + +     +P  P +           L   K  DDGG P+  Y+V+    +  
Sbjct: 278 GDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKE 336

Query: 100 VWIPVGKTR--EPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
                 K +  +  + +  L     Y+ ++ A N+ G SEP     S+  +
Sbjct: 337 DQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 387

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 10/72 (13%), Positives = 25/72 (34%)

Query: 641 PISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700
             +        D R+ +      + + I+ ++ SD+ +Y   A +  G  Q  + + +  
Sbjct: 40  GFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY 99

Query: 701 KPSAPEGPIQIW 712
            P         +
Sbjct: 100 APKFISNQTIYY 111

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  188 bits (480), Expect = 6e-56
 Identities = 69/202 (34%), Positives = 96/202 (47%), Gaps = 7/202 (3%)

Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
            +D P PP    KV  V    VTL W  P  DGG  I+ Y+V+K +     ++    T  
Sbjct: 2   AMDTPGPPQDL-KVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVA-TNC 59

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDT 338
             T  +V+ L     Y FRV A N+ G   P  T  S++A      P  PG   + D   
Sbjct: 60  HKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER---PLPPGKITLMDVTR 116

Query: 339 DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR 398
           + V L+W  PE +GGS I+GYI+E + K S  W  C        +  +  LI+G +Y FR
Sbjct: 117 NSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATC--ATVKVTEATITGLIQGEEYSFR 174

Query: 399 VLAVNKGGPGEPSDPTAPHIAR 420
           V A N+ G  +P   + P IA+
Sbjct: 175 VSAQNEKGISDPRQLSVPVIAK 196

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  110 bits (277), Expect = 6e-28
 Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 56/195 (28%)

Query: 10  TKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEK------------------ 51
             P  P+   +V  + K   TL W+ P  DGG  ++ Y+VEK                  
Sbjct: 4   DTPGPPQDL-KVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKT 62

Query: 52  ---DRGLDPE----------------------------------GPLEVSNIHKDGCTLK 74
                 L                                     G + + ++ ++  +L 
Sbjct: 63  SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLS 122

Query: 75  WNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG 134
           W KP+ DGG  + GY+VE     +  W      +  E  +TGL  G EY FRV A N++G
Sbjct: 123 WEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKG 182

Query: 135 ESEPLETFSSIIARD 149
            S+P +    +IA+D
Sbjct: 183 ISDPRQLSVPVIAKD 197

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 97.0 bits (242), Expect = 3e-23
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)

Query: 200 YTVTAENINGKD--SVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE 256
           + V AEN  G    +   E +   ++P PPG    + +V    V+L W+ P+ DGG  I 
Sbjct: 77  FRVLAENEYGIGLPAETAESVKASERPLPPGKI-TLMDVTRNSVSLSWEKPEHDGGSRIL 135

Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
            Y+V+   + + +W         VT   + GLI   +Y FRV A N++G S+P   +  +
Sbjct: 136 GYIVEMQTKGSDKWATC--ATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPV 193

Query: 317 EAK 319
            AK
Sbjct: 194 IAK 196

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-REPEMDV 114
            P   L+V  + K   TL W+ P  DGG  ++ Y+VEK +     +  V     +    V
Sbjct: 7   GPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKV 66

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
             L  G  Y FRV A N+ G   P ET  S+ A + 
Sbjct: 67  DQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER 102

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 29/180 (16%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
            +L W+PP  DGG+ I+ Y+VEK E+        +                T   +  LQ
Sbjct: 22  VTLTWDPPLLDGGSKIKNYIVEKRESTRK----AYSTVATNCHK-------TSWKVDQLQ 70

Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVT---DKPSAPEGPIQWLLTLTD----VTWEISNY 631
              +  + V A N  G              ++P  P      L+ +T     ++WE   +
Sbjct: 71  EGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKIT--LMDVTRNSVSLSWEKPEH 128

Query: 632 LQELHSSLMPIS---LESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
                     I    +E Q   +DK  T   V   T+ TI  L + +   + V+A N +G
Sbjct: 129 DG-----GSRILGYIVEMQTKGSDKWATCATVKV-TEATITGLIQGEEYSFRVSAQNEKG 182

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score =  183 bits (467), Expect = 6e-54
 Identities = 47/214 (21%), Positives = 71/214 (33%), Gaps = 15/214 (7%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE------- 275
             PP  P  V+ +  E V L W VP +DG   +   V  +M      W    +       
Sbjct: 2   TYPPT-PPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60

Query: 276 ----TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI--EAKNPFNQPGKPG 329
                 G      V  L P H Y+FR+ AV     ++   T+A    +     +    P 
Sbjct: 61  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120

Query: 330 TPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI-WEKCAQTEGDTPKGKVLD 388
             EI+++    V L W+         I GY    +   S   + K           K+  
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180

Query: 389 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK 422
           L     YEF++ + +     E S        R K
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 86.0 bits (213), Expect = 3e-19
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 13/98 (13%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD--- 113
           P  P  V+ +  +   L+W  P++DG   +   +  +   +   W               
Sbjct: 4   PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63

Query: 114 ----------VTGLTPGHEYKFRVKALNKEGESEPLET 141
                     VT L P H Y+FR+ A+    +++   T
Sbjct: 64  SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 101

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 76.4 bits (188), Expect = 6e-16
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 6/113 (5%)

Query: 42  EPLEGYLVEKDRGLDPEGP---LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET 98
                + ++    LDP      LE+    +    L W+   D     + GY        +
Sbjct: 100 NTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSS 159

Query: 99  -GVWIPVGKTREP--EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
            G +              +  L     Y+F++++ +    SE          R
Sbjct: 160 AGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 13/105 (12%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTND-----KRVTIDNVDYFTKIT 573
             L+W  P +DG   + + +  +M          W  TND     K      +      +
Sbjct: 18  VMLRWMVPRNDGLPIVIFKVQYRMVGKRK----NWQTTNDNIPYGKPKWNSELGKSFTAS 73

Query: 574 IRPLQRSDTAQYTVTATNSQGK----DQVFIEVVVTDKPSAPEGP 614
           +  L+   T ++ + A  S       +      +       P   
Sbjct: 74  VTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPV 118

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 9/76 (11%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
             L W+   D     I  Y      + +     ++ +   +              I PL+
Sbjct: 132 VVLHWSLASDADEHLITGYYAYYRPSSSAG---EYFKATIEGAHA------RSFKIAPLE 182

Query: 579 RSDTAQYTVTATNSQG 594
            +   ++ + + ++  
Sbjct: 183 TATMYEFKLQSFSAAS 198

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score =  180 bits (457), Expect = 1e-52
 Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 9/200 (4%)

Query: 218 IVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET- 276
              D PS P   +     ++    + +  P+  GG PI KY  +        W       
Sbjct: 4   AQADTPSSPS--IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61

Query: 277 --EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK 334
                   + + GL P   Y  R+ A+N +G  E   + AS     P  +P  P      
Sbjct: 62  KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI--SAASEFKTQPVREPSAPKLEGQM 119

Query: 335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQ 394
             D + +++     + +GGSPI  Y++  +   S  W+   +    +    +  L    +
Sbjct: 120 GEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSE-WKPEIRLPSGSDHVMLKSLDWNAE 177

Query: 395 YEFRVLAVNKGGPGEPSDPT 414
           YE  V+A N+ G  + +   
Sbjct: 178 YEVYVVAENQQGKSKAAHFV 197

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 86.0 bits (213), Expect = 3e-19
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 5/127 (3%)

Query: 200 YTVTAENINGK-DSVEVEVIVLDKPSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIE 256
             + A N  G  +              P  P            + ++    DD GG PI 
Sbjct: 83  VRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDD-GGSPIR 141

Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
            Y+V +    +  W P          + ++ L  N +Y+  V A N+QGKS+        
Sbjct: 142 HYLV-RYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRT 200

Query: 317 EAKNPFN 323
            A +  +
Sbjct: 201 AAAHHHH 207

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 84.5 bits (209), Expect = 8e-19
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 57  PEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-----REP 110
           P  P ++    +     +++++P+  GG P+  Y  E       VW            E 
Sbjct: 9   PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 68

Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS 152
            + + GL P   Y  R+ ALN +G  E      S     P  
Sbjct: 69  IVTIVGLKPETTYAVRLAALNGKGLGEISAA--SEFKTQPVR 108

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 41  GEPLEGYLVEKDRGLDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET 98
           GE       +     +P  P          +   +   K  DDGG P+  YLV  Y   +
Sbjct: 94  GEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVR-YRALS 151

Query: 99  GVWIPVGKT--REPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPY 151
             W P  +       + +  L    EY+  V A N++G+S+         A   +
Sbjct: 152 SEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHH 206

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 30/193 (15%), Positives = 53/193 (27%), Gaps = 32/193 (16%)

Query: 511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT 570
             +       ++++ PE  GG PI  Y  E            W                 
Sbjct: 16  QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE----VWHSKWY---DAKEASMEG 68

Query: 571 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLT------DV 624
            +TI  L+   T    + A N +G  ++        +P       +    +        V
Sbjct: 69  IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKV 128

Query: 625 TWE--------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDT 676
                      I +YL    +       E +       V + ++D+  +  +        
Sbjct: 129 NLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVY------- 181

Query: 677 AQYTVTATNSQGK 689
               V A N QGK
Sbjct: 182 ----VVAENQQGK 190

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score =  148 bits (375), Expect = 4e-41
 Identities = 46/200 (23%), Positives = 69/200 (34%), Gaps = 7/200 (3%)

Query: 218 IVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT-GRWTPAGET 276
           IV D P+ P          A+   + W+   D    PI  Y +      T   W  A E 
Sbjct: 1   IVQDVPNAPKLT--GITCQADKAEIHWEQQGD-NRSPILHYTIQFNTSFTPASWDAAYEK 57

Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF 336
                   V  + P   Y FRV A NK G S P   + S   + P      P     +  
Sbjct: 58  VPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ-PDVPFKNPDNVVGQGT 116

Query: 337 DTDFVELAWTP-PEQNGGSPIVGYIIEKKEKYSPI-WEKCAQTEGDTPKGKVLDLIEGNQ 394
           + + + ++WTP PE    +P   Y +  K       WE     +       + D     +
Sbjct: 117 EPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVK 176

Query: 395 YEFRVLAVNKGGPGEPSDPT 414
           Y  +V+A+N  G    +   
Sbjct: 177 YLIKVVAINDRGESNVAAEE 196

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 90.5 bits (225), Expect = 7e-21
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 10/137 (7%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP-IWEKCAQTEGDTPK 383
           P  P    I        E+ W     +  SPI+ Y I+    ++P  W+   +   +T  
Sbjct: 6   PNAPKLTGITCQAD-KAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN 443
             V+ +     Y FRV+A NK G   PS  +       +   P+ N     ++  +    
Sbjct: 64  SFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSC--TTQPDVPFKN---PDNVVGQGTEP 118

Query: 444 FEFDINVIGEPIPTKEW 460
               + +   P+P  E 
Sbjct: 119 NN--LVISWTPMPEIEH 133

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 6/88 (6%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE-KYDPETGVWIPVGKTREPEMD-- 113
           P+          D   + W +   D   P+  Y ++         W    +         
Sbjct: 9   PKLT--GITCQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSF 65

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
           V  ++P   Y FRV A NK G S P   
Sbjct: 66  VVQMSPWANYTFRVIAFNKIGASPPSAH 93

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 9/106 (8%)

Query: 41  GEPLEGYLVEKDRGLDPEGP---LEVSNIHKDGCTLKWNK-PKDDGGEPLEGYLVEKYDP 96
             P         +   P      +       +   + W   P+ +   P   Y V  +  
Sbjct: 88  SPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVS-WKR 146

Query: 97  ETGV--WIP--VGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
           +     W    +   R+  + +       +Y  +V A+N  GES  
Sbjct: 147 DIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNV 192

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 13/98 (13%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
             + W     D  +PI +Y ++   + T      W          + V       +  + 
Sbjct: 21  AEIHWEQQ-GDNRSPILHYTIQFNTSFTPA---SWDAAY------EKVPNTDSSFVVQMS 70

Query: 579 RSDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEGP 614
                 + V A N  G        +   T +P  P   
Sbjct: 71  PWANYTFRVIAFNKIGASPPSAHSDSCTT-QPDVPFKN 107

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  153 bits (388), Expect = 1e-39
 Identities = 62/406 (15%), Positives = 109/406 (26%), Gaps = 41/406 (10%)

Query: 42  EPLEGYLVEKDRGLDPEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV 100
           + +    V K +   P    +  S        L W  P       L  Y ++    +   
Sbjct: 187 DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL-KYNIQYRTKDAST 245

Query: 101 WIPV----GKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP------ 150
           W  +      +      V  L P  EY FR++ + ++G+    +                
Sbjct: 246 WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK 305

Query: 151 ------------YSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQ----- 193
                          Y +V  +       +  G  +  +V    + + L           
Sbjct: 306 APSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLT 365

Query: 194 ---RADAGFYTVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDD 249
                D    T+T  N+ GK D+  + +   D  +        +      + ++W  P +
Sbjct: 366 VNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE 425

Query: 250 DGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
              + I ++ V              E            L  +  Y   V  V   G   P
Sbjct: 426 SVKKYILEWCVLSDKAPCITDWQQ-EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP 484

Query: 310 LTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWT-PPEQNGGSPIVGYIIEKKEKYS 368
                SI+A      P K  T   K    +   L W   P       I  Y I  +    
Sbjct: 485 ----ESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIG 540

Query: 369 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
              E     +    +  +  L     Y  R+ A    G  +  + T
Sbjct: 541 --NETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  150 bits (381), Expect = 1e-38
 Identities = 75/538 (13%), Positives = 141/538 (26%), Gaps = 76/538 (14%)

Query: 194 RADAGFYTVTAENINGKDSVE--VEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDG 251
            +     T         +     + +I    P  P   L       + +  +W    +  
Sbjct: 72  ASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETH 130

Query: 252 GQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLT 311
                 + +              + + P +       +     +  V A N  GK     
Sbjct: 131 L--ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDH 188

Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW 371
                  K   N P    +    +  +  ++L WT P       I+ Y I+ + K +  W
Sbjct: 189 INFDPVYKVKPNPPHNL-SVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTW 246

Query: 372 EKCA--QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYIN 429
            +     T        V DL    +Y FR+  + + G G  SD +        +  P   
Sbjct: 247 SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKA 306

Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT--IISKDRFKIVNDDKSTKLKVF 487
                 I           + ++ + +P  E     I    ++  R+K    + +      
Sbjct: 307 PSFWYKIDPSHTQG-YRTVQLVWKTLPPFEANG-KILDYEVTLTRWKSHLQNYTVNATKL 364

Query: 488 -DSKRGDSGIYTLAVKNSWGT------------DKGTAKVTVL-------GCSLKWNPPE 527
             +   D  + TL V+N  G              + T  V  L          ++W  P 
Sbjct: 365 TVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPR 424

Query: 528 DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTV 587
           +     I  + V   +        +   T  +     N+       I            V
Sbjct: 425 ESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLIT-----------V 473

Query: 588 TATNSQGKDQVFIEVVVT--DKPSAPEGPIQWLLTLT--DVTWE----------ISNY-- 631
           T   + G               PS         +      + W+          I NY  
Sbjct: 474 TPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTI 533

Query: 632 -LQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
             + +               N+  V +D+    T+ T+  L         + A   +G
Sbjct: 534 FYRTIIG-------------NETAVNVDSSH--TEYTLSSLTSDTLYMVRMAAYTDEG 576

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  108 bits (271), Expect = 8e-25
 Identities = 66/423 (15%), Positives = 116/423 (27%), Gaps = 69/423 (16%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           PE P  L            +W+  ++     LE     K +  T  +      R+     
Sbjct: 103 PEKPKNLSCIVNEGKKMRCEWDGGRETH---LETNFTLKSEWATHKFADCKAKRDTPTSC 159

Query: 115 T---GLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSN---- 167
           T           +  V+A N  G+          + +   +   ++S ++S + S+    
Sbjct: 160 TVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKL 219

Query: 168 -------------------QPCGSGMVRKVQHLDYNTKLGVRMAQRADAG---FYTVTAE 205
                              +   +    ++   D  +       Q         + +   
Sbjct: 220 TWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCM 279

Query: 206 NINGKD-----SVEVEVIVL-DKPSPPGGPLKVSNVHAEG----VTLDWK-VPDDDGGQP 254
             +GK      S E   I   D+PS         +         V L WK +P  +    
Sbjct: 280 KEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGK 339

Query: 255 IEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA 314
           I  Y V      +            V   ++   + N +Y   +   N  GKS+    T 
Sbjct: 340 ILDYEVTLTRWKSHLQNY------TVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTI 393

Query: 315 SIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKC 374
                   +               + + + WT P ++    I+ + +   +         
Sbjct: 394 PACDFQATHPV----MDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDW-- 447

Query: 375 AQTEGDTPKGKVL--DLIEGNQYEFRVLAVNKGGPGEPS---------DPTAPHIARAKK 423
            Q E  T     L  +L E   Y   V  V   GPG P           P+     R KK
Sbjct: 448 -QQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKK 506

Query: 424 VSP 426
           V  
Sbjct: 507 VGK 509

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 57.7 bits (139), Expect = 9e-09
 Identities = 21/184 (11%), Positives = 44/184 (23%), Gaps = 55/184 (29%)

Query: 10  TKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDR---------------- 53
              A        +    +   ++W  P++   + +  + V  D+                
Sbjct: 397 DFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHR 456

Query: 54  -----GLDP---------------EGP------------------LEVSNIHKDGCTLKW 75
                 L                  G                   +    + K+   L+W
Sbjct: 457 TYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEW 516

Query: 76  NK-PKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG 134
           ++ P D     +  Y +               +   E  ++ LT    Y  R+ A   EG
Sbjct: 517 DQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG 576

Query: 135 ESEP 138
             + 
Sbjct: 577 GKDG 580

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 31/202 (15%), Positives = 57/202 (28%), Gaps = 27/202 (13%)

Query: 516 VLGCSLKWNPPEDDG-GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITI 574
              C LK    +     A    +          +     I      VT  ++        
Sbjct: 22  TAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQ--YTIINRTASSVTFTDI-------- 71

Query: 575 RPLQRSDTAQYT--VTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT--WEISN 630
                S   Q T  +       ++   I ++    P  P+     +     +   W+   
Sbjct: 72  ----ASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGG- 126

Query: 631 YLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIR-PLQRSDTAQYTVTATNSQGK 689
             +E H      +L+S++  +         D  T  T+          +  V A N+ GK
Sbjct: 127 --RETHLETN-FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK 183

Query: 690 ---DQVFIEVVVTDKPSAPEGP 708
              D +  + V   KP+ P   
Sbjct: 184 VTSDHINFDPVYKVKPNPPHNL 205

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  148 bits (375), Expect = 2e-39
 Identities = 55/370 (14%), Positives = 103/370 (27%), Gaps = 60/370 (16%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR---EPEMDVTGLTPGHEYKFRVK 128
           T+ W +        + GY +            + +     +       L+PG EY   V 
Sbjct: 21  TVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVY 77

Query: 129 ALNKEGESEPLE------------------TFSSIIAR------DPYSKYT-SVSSLDSH 163
            +  + ES P+                   T SSI  R           Y  +V +    
Sbjct: 78  TVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEG 137

Query: 164 KRSNQPCGSGMVRK--VQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
               +      V    V  L+      +            V      G +S    +    
Sbjct: 138 IPIFEDFVDSSVGYYTVTGLEPGIDYDIS-----------VITLINGG-ESAPTTLTQQT 185

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
              PP   L+ +N+  + + + W  P       +  ++V                     
Sbjct: 186 AVPPPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDN 241

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
            + +  L+P  +Y   V +V +Q +S PL                 P   +  D   +  
Sbjct: 242 AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG-------LDSPTGIDFSDITANSF 294

Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA 401
            + W  P     + I GY I    ++     +  +         + +L  G +Y   ++A
Sbjct: 295 TVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVA 350

Query: 402 VNKGGPGEPS 411
           +N        
Sbjct: 351 LNGREESPLL 360

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  123 bits (310), Expect = 1e-30
 Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
            +V     + K+SV +   ++ +       L   ++    + L W   +      I  Y 
Sbjct: 74  VSVYTVK-DDKESVPISDTIIPEVPQLTD-LSFVDITDSSIGLRWTPLN---SSTIIGYR 128

Query: 260 VDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
           +  +    G        +  V    V GL P   Y   V  +   G+S P T T      
Sbjct: 129 ITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTA-- 186

Query: 320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG 379
                   P      +   D + + W PP       +  +++      +           
Sbjct: 187 -----VPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISP 238

Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 426
                 + +L+ G +Y   V +V +     P          +P       ++ 
Sbjct: 239 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITA 291

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  103 bits (258), Expect = 7e-24
 Identities = 37/196 (18%), Positives = 57/196 (29%), Gaps = 15/196 (7%)

Query: 223 PSPPGGPLKVSNV-HAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-EGPV 280
           P  P   L +        +T+ W+         I  Y +        +     E      
Sbjct: 2   PLSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQ 58

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDF 340
           +    + L P  +Y   V  V    +S P++ T   E         +       D     
Sbjct: 59  SSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPE-------VPQLTDLSFVDITDSS 111

Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 400
           + L WTP      S I+GY I        I       +       V  L  G  Y+  V+
Sbjct: 112 IGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVI 168

Query: 401 AVNKGGPGEPSDPTAP 416
            +  GG   P+  T  
Sbjct: 169 TLINGGESAPTTLTQQ 184

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  100 bits (250), Expect = 7e-23
 Identities = 48/292 (16%), Positives = 79/292 (27%), Gaps = 51/292 (17%)

Query: 54  GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR--EPE 111
            +     L   +I      L+W          + GY +       G+ I           
Sbjct: 95  EVPQLTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGY 151

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS------------------- 152
             VTGL PG +Y   V  L   GES P           P                     
Sbjct: 152 YTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP 211

Query: 153 ---------KYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVT 203
                    +Y+ V + +     +    S     + +L   T+  V            V+
Sbjct: 212 SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNAVVLTNLLPGTEYVVS-----------VS 259

Query: 204 AENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKM 263
           +      +S  +          P G +  S++ A   T+ W  P       I  Y +   
Sbjct: 260 SVYEQH-ESTPLRGRQKTGLDSPTG-IDFSDITANSFTVHWIAPR----ATITGYRIRHH 313

Query: 264 DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
            E                 + +  L P  +Y   + A+N + +S  L    S
Sbjct: 314 PEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 365

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 48/396 (12%), Positives = 96/396 (24%), Gaps = 67/396 (16%)

Query: 337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKC-AQTEGDTPKGKVLDLIEGNQY 395
           DT  + ++W          I GY I                   D       +L  G +Y
Sbjct: 16  DTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEY 72

Query: 396 EFRVLAVNKGGPGEPS------DPTAPHIARAKKVSPYINRDQLSDIKV-----RAGSNF 444
              V  V       P       +           ++        S I +      + +  
Sbjct: 73  NVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITD-------SSIGLRWTPLNSSTII 125

Query: 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK--LKVFDSKRGDSGIYTLAVK 502
            + I V+         +  D    S   + +   +      + V     G     T    
Sbjct: 126 GYRITVV--AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPT--TL 181

Query: 503 NSWGTDKGTAKVTVLGCS-----LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKW-IRT 556
                      +           + W PP       +  ++V        + + +  I  
Sbjct: 182 TQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISP 238

Query: 557 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
           +D  V + N+   T+  +            V++   Q +         T    +P G   
Sbjct: 239 SDNAVVLTNLLPGTEYVVS-----------VSSVYEQHESTPLRGRQKTG-LDSPTGIDF 286

Query: 617 WLLTLT--DVTWE-----ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIR 669
             +T     V W      I+ Y    H            + + +            IT+ 
Sbjct: 287 SDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSR----------NSITLT 336

Query: 670 PLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
            L        ++ A N +  +   +    +   +  
Sbjct: 337 NLTPGTEYVVSIVALNGRE-ESPLLIGQQSTVSAHH 371

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 7/101 (6%)

Query: 45  EGYLVEKDRGLDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI 102
           E       +      P  L  +NI  D   + W  P       L  +LV     +    +
Sbjct: 175 ESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDV 231

Query: 103 P--VGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
                   +  + +T L PG EY   V ++ ++ ES PL  
Sbjct: 232 AELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG 272

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  146 bits (370), Expect = 9e-39
 Identities = 57/392 (14%), Positives = 100/392 (25%), Gaps = 62/392 (15%)

Query: 55  LDPEGPLEVSNI-HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT---REP 110
           L P   L +         T+ W +        + GY +            + +     + 
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLE------------------TFSSIIAR---- 148
                 L+PG EY   V  +  + ES P+                      ++       
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPP 118

Query: 149 --DPYSKYT---SVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVT 203
                + +    S    +          S     + +L   T+  V            V+
Sbjct: 119 PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVS-----------VS 167

Query: 204 AENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKM 263
           +      +S  +          P G +  S++ A   T+ W  P       I  Y +   
Sbjct: 168 SVYEQH-ESTPLRGRQKTGLDSPTG-IDFSDITANSFTVHWIAPRA----TITGYRIRHH 221

Query: 264 DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFN 323
            E                 + +  L P  +Y   + A+N + +S  L    S        
Sbjct: 222 PEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTV------ 275

Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
               P   E+       + ++W  P       +  Y I   E       +     G    
Sbjct: 276 -SDVPRDLEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKST 330

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
             +  L  G  Y   V AV   G    S    
Sbjct: 331 ATISGLKPGVDYTITVYAVTGRGDSPASSKPI 362

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  103 bits (258), Expect = 6e-24
 Identities = 29/211 (13%), Positives = 58/211 (27%), Gaps = 20/211 (9%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-EGPVT 281
            SPP      +N     +T+ W+         I  Y +        +     E      +
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
               + L P  +Y   V  V    +S P++ T              P      +   D +
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPA-------VPPPTDLRFTNIGPDTM 111

Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA 401
            + W PP       +  +++      +                 + +L+ G +Y   V +
Sbjct: 112 RVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSS 168

Query: 402 VNKGGPGEPS------DPTAPHIARAKKVSP 426
           V +     P          +P       ++ 
Sbjct: 169 VYEQHESTPLRGRQKTGLDSPTGIDFSDITA 199

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  100 bits (250), Expect = 6e-23
 Identities = 48/297 (16%), Positives = 81/297 (27%), Gaps = 54/297 (18%)

Query: 54  GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPE 111
            + P   L  +NI  D   + W  P       L  +LV     +    +        +  
Sbjct: 94  AVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNA 150

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS------------------- 152
           + +T L PG EY   V ++ ++ ES PL          P                     
Sbjct: 151 VVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR 210

Query: 153 --------KYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYT--V 202
                   ++         +    P  S     + +L   T+             Y   +
Sbjct: 211 ATITGYRIRHHPEHFSGRPREDRVP-HSRNSITLTNLTPGTE-------------YVVSI 256

Query: 203 TAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDK 262
            A N    +S  +          P   L+V       + + W  P       +  Y +  
Sbjct: 257 VALNGRE-ESPLLIGQQSTVSDVPR-DLEVVAATPTSLLISWDAPAV----TVRYYRITY 310

Query: 263 MDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
            +             G  +   + GL P   Y   V AV  +G S   +   SI  +
Sbjct: 311 GETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  135 bits (342), Expect = 9e-36
 Identities = 35/224 (15%), Positives = 62/224 (27%), Gaps = 20/224 (8%)

Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
              S  +EV+      P    LK + V    ++  W  P       +  Y V    +   
Sbjct: 6   HHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPKEKT 61

Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
                       + + V GL+   KY+  V A+     S P     +            P
Sbjct: 62  GPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLEN-----VSPP 116

Query: 329 GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLD 388
               + D     + ++W          I G+ ++          +    + D     +  
Sbjct: 117 RRARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQ-RTIKPDVRSYTITG 171

Query: 389 LIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 426
           L  G  Y+  +  +N      P          AP   R    +P
Sbjct: 172 LQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTP 215

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  132 bits (335), Expect = 9e-35
 Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 18/216 (8%)

Query: 201 TVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
           +V A          +  V  L+  SPP    +V++     +T+ W+   +     I  + 
Sbjct: 90  SVYALKDTLTSRPAQGVVTTLENVSPPRR-ARVTDATETTITISWRTKTE----TITGFQ 144

Query: 260 VDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
           VD +             +  V    + GL P   YK  +  +N   +S P+   AS    
Sbjct: 145 VDAVPANGQTPIQR-TIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTA-- 201

Query: 320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG 379
                   P          + + ++W PP     + I GYII+ ++  SP  E   +   
Sbjct: 202 -----IDAPSNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRP 252

Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
              +  +  L  G +Y   V+A+      EP     
Sbjct: 253 GVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGRK 288

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  121 bits (306), Expect = 7e-31
 Identities = 47/296 (15%), Positives = 87/296 (29%), Gaps = 32/296 (10%)

Query: 40  GGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG 99
                   ++ +   +     L+ + +     + +W  P       L GY V     E  
Sbjct: 6   HHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPKEKT 61

Query: 100 VWIPVGK--TREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSV 157
             +           + V+GL    +Y+  V AL     S P +   + +      +   V
Sbjct: 62  GPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARV 121

Query: 158 SSLDSHKRS---NQPCGSGMVR--KVQHLDYNTKLGVRMAQRADAGFYTVT--------- 203
           +       +        +  +   +V  +  N +  ++   + D   YT+T         
Sbjct: 122 TDATETTITISWRTK--TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYK 179

Query: 204 ----AENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
                 N N   S  V +        P   L+        + + W+ P       I  Y+
Sbjct: 180 IYLYTLNDNA-RSSPVVIDASTAIDAPSN-LRFLATTPNSLLVSWQPPRA----RITGYI 233

Query: 260 VDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
           +      +            VT   + GL P  +Y   V A+    KSEPL     
Sbjct: 234 IKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGRKK 289

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 79.5 bits (196), Expect = 2e-16
 Identities = 21/116 (18%), Positives = 31/116 (26%), Gaps = 10/116 (8%)

Query: 300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGY 359
           A +    S  L       A         P   +        +   WTPP       + GY
Sbjct: 2   AHHHHHHSSGLEVLFQGPAIPA------PTDLKFTQVTPTSLSAQWTPP----NVQLTGY 51

Query: 360 IIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            +    K      K      D+    V  L+   +YE  V A+       P+    
Sbjct: 52  RVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVV 107

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  134 bits (338), Expect = 6e-35
 Identities = 61/267 (22%), Positives = 100/267 (37%), Gaps = 12/267 (4%)

Query: 164 KRSNQPCGSGMVRKVQHLDY-NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
           ++  +    G+  ++Q       +L +      DA  Y V A N  G  S    + V   
Sbjct: 40  RQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP 99

Query: 223 PS--PPGGPLKVSNVHA-EGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
                P     +  VHA  G  +  K+P      P+  +   +             T   
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF 159

Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTD 339
            + +   G+       + V A N+ G       T  ++  +    P  P   ++ D   D
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGID---QKTVELDVADV---PDPPRGVKVSDVSRD 213

Query: 340 FVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
            V L WT P  +GGS I  YI+EK    +  W +    +    +  V++L     Y+FRV
Sbjct: 214 SVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVG--QARETRYTVINLFGKTSYQFRV 271

Query: 400 LAVNKGGPGEPSDPTAPHIARAKKVSP 426
           +A NK G  +PS+P+ P I +  K   
Sbjct: 272 IAENKFGLSKPSEPSEPTITKEDKTRA 298

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  115 bits (290), Expect = 1e-28
 Identities = 51/247 (20%), Positives = 90/247 (36%), Gaps = 36/247 (14%)

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFD 447
            + + +   ++V A N+GG    +      +    K+      + +  +    G      
Sbjct: 68  SVTDDDATVYQVRATNQGGSVSGTASL--EVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125

Query: 448 INVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 506
           I   G+P P   W      I +   ++++     ++ +     +R D+G Y +  KN +G
Sbjct: 126 IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185

Query: 507 TDKGTAKVTVLG-----------------CSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
            D+ T ++ V                    +L W  P  DGG+ I  Y+VEK  T     
Sbjct: 186 IDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAE-- 243

Query: 550 LIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ--VFIEVVVT-- 605
             +W+R    R         T+ T+  L    + Q+ V A N  G  +     E  +T  
Sbjct: 244 --RWLRVGQAR--------ETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293

Query: 606 DKPSAPE 612
           DK  A  
Sbjct: 294 DKTRAMN 300

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  104 bits (260), Expect = 1e-24
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
           P G  +VS++ +D   L W +P  DGG  +  Y+VEK       W+ VG+ RE    V  
Sbjct: 202 PRGV-KVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVIN 260

Query: 117 LTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSK 153
           L     Y+FRV A NK G S+P E     I ++  ++
Sbjct: 261 LFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTR 297

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 95.6 bits (238), Expect = 9e-22
 Identities = 66/323 (20%), Positives = 114/323 (35%), Gaps = 55/323 (17%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKI-VNDDKS 481
           ++P+  +++L ++ VR  SN      V G P P  +W      II    +++I       
Sbjct: 3   MAPHF-KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
            +L +      D+ +Y +   N  G+  GTA + V        P +     P     +  
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV------EVPAKIH--LPKTLEGMGA 113

Query: 542 METDTGKVL-------------IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDT 582
           +    G+V+             I W      I  N     I    + + +    ++R D 
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDA 173

Query: 583 AQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT-------WEISNYLQEL 635
             Y V A N  G DQ  +E+ V D P  P G       ++DV+       W         
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVADVPDPPRGVK-----VSDVSRDSVNLTWTEPAS---D 225

Query: 636 HSSLMPIS---LESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ- 691
             S   I+   +E      ++ + +      T+ T+  L    + Q+ V A N  G  + 
Sbjct: 226 GGS--KITNYIVEKCATTAERWLRVGQAR-ETRYTVINLFGKTSYQFRVIAENKFGLSKP 282

Query: 692 -VFIEVVVT--DKPSAPEGPIQI 711
               E  +T  DK  A     ++
Sbjct: 283 SEPSEPTITKEDKTRAMNYDEEV 305

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  140 bits (353), Expect = 6e-35
 Identities = 51/441 (11%), Positives = 111/441 (25%), Gaps = 82/441 (18%)

Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDG 251
                +G     +    G      + +    P  P   L+ + + +  + + W    +  
Sbjct: 130 VDNECSGVKKCCSNGC-GHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNIS 188

Query: 252 GQPI-------EKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQ 304
            +P+         Y +   ++    W      +     +++  + P+  Y+FRV AVN  
Sbjct: 189 IEPVIYVVQRRWNYGIHPSEDDATHWQTV--AQTTDERVQLTDIRPSRWYQFRVAAVNVH 246

Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDF-----VELAWTPPEQNGGSPIVGY 359
           G       +    +    + P  P    + +   +      V + W  PE+    P+  Y
Sbjct: 247 GTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI-PVHHY 305

Query: 360 IIE------KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
            +        K       ++   T+G      +  L     Y   + A+   G       
Sbjct: 306 KVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSA 365

Query: 414 TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF 473
                  +   +     ++   +K R G            P    E              
Sbjct: 366 KVSLHFTSTHATN----NKEQLVKTRKGGIQTQLPFQRRRPTRPLEVG------------ 409

Query: 474 KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAP 533
                D   ++KV                  W                K           
Sbjct: 410 APFYQDGQLQVKV-----------------YW----------------KKTEDPTVNRYH 436

Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 593
           + ++        T         T++  + + ++ +  K  +            V     +
Sbjct: 437 VRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVT-----------VQPIRPK 485

Query: 594 GKDQVFIEVVVTDKPSAPEGP 614
              +       T   SA +G 
Sbjct: 486 SHSKAEAVFFTTPPCSALKGK 506

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  115 bits (288), Expect = 8e-27
 Identities = 51/413 (12%), Positives = 102/413 (24%), Gaps = 102/413 (24%)

Query: 40  GGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPL-------EGYLVE 92
           G        + K   L P   L  + +      +KW+   +   EP+         Y + 
Sbjct: 146 GHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIH 205

Query: 93  KYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS 152
             + +   W  V +T +  + +T + P   Y+FRV A+N  G            +    S
Sbjct: 206 PSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPS 265

Query: 153 KYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDS 212
              + ++L                                             N      
Sbjct: 266 APPAPANL------------------------------------------RLANSTVNSD 283

Query: 213 VEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWT 271
             V V ++ D P  P  P+           + W            K              
Sbjct: 284 GSVTVTIVWDLPEEPDIPV-------HHYKVFWSWMVSSKSLVPTK------------KK 324

Query: 272 PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP 331
               T+G    + +E L P+  Y   ++A+   G++   +   S+   +      K    
Sbjct: 325 RRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLV 384

Query: 332 EIKDFDTDF--------------------------VELAWTPPEQNGGSPIVGYIIEKKE 365
           + +                                V++ W   E      +  Y +    
Sbjct: 385 KTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTED---PTVNRYHVRWFP 441

Query: 366 KYSP----IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           +          + +          + DL    +Y+  V  +      +     
Sbjct: 442 EACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVF 494

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  110 bits (276), Expect = 2e-25
 Identities = 57/424 (13%), Positives = 113/424 (26%), Gaps = 108/424 (25%)

Query: 59  GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE--------KYDPETGVWIPVGKTREP 110
               V++      T+ W+ P++    P+  Y V            P            + 
Sbjct: 276 ANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQN 334

Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPC 170
            + +  L P  +Y   ++A+   G++       S+     ++                  
Sbjct: 335 SVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHA------------------ 376

Query: 171 GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPL 230
                                         T   E +       ++  +  +   P  PL
Sbjct: 377 ------------------------------TNNKEQLVKTRKGGIQTQLPFQRRRPTRPL 406

Query: 231 KVSNVHAEG----VTLDWKVPDDDGGQPIEKYVVDKMDEATG----RWTPAGETEGPVTG 282
           +V     +     V + WK  +D     + +Y V    EA        + A         
Sbjct: 407 EVGAPFYQDGQLQVKVYWKKTEDP---TVNRYHVRWFPEACAHNRTTGSEASSGMTHENY 463

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSE--------PLTTTASIEAKNPFN----------- 323
           + ++ L  + KYK  V+ +  +  S+        P  +    ++  P             
Sbjct: 464 IILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSK 523

Query: 324 ---QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP---------IW 371
              +P       I          +W   + N   P+ G+ +   E  +          I 
Sbjct: 524 VLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSII 583

Query: 372 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD---------PTAPHIARAK 422
            +      D     V +L     Y   V  +  GG G  +          P++ H +  K
Sbjct: 584 SQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRTPELPPSSAHRSHLK 643

Query: 423 KVSP 426
              P
Sbjct: 644 HRHP 647

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  100 bits (250), Expect = 3e-22
 Identities = 52/325 (16%), Positives = 87/325 (26%), Gaps = 78/325 (24%)

Query: 57  PEGPLEVSNIHKDG----CTLKWNKPKDDGGEPLEGYLVEKY------DPETGVWIPVGK 106
           P  PLEV             + W K +D     +  Y V  +      +  TG     G 
Sbjct: 402 PTRPLEVGAPFYQDGQLQVKVYWKKTED---PTVNRYHVRWFPEACAHNRTTGSEASSGM 458

Query: 107 TREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRS 166
           T E  + +  L+   +YK  V+ +  +  S+    F +             S+L      
Sbjct: 459 THENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTT---------PPCSALKGKSHK 509

Query: 167 NQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
              C                                        ++  V   VL KP   
Sbjct: 510 PIGCLG--------------------------------------EAGHVLSKVLAKPENL 531

Query: 227 GGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET---------E 277
                V +V+       WK+   +  QP+  + V   +  T     +             
Sbjct: 532 SASFIVQDVNIT-GHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILP 590

Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFD 337
                L V  L P+  Y+  V+ +   G+      T       P   P       +K   
Sbjct: 591 SDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRT----PELPPSSAHRSHLKHRH 646

Query: 338 TDFVELAWTPPEQNGGSPIVGYIIE 362
                  + P  +  G PI   ++ 
Sbjct: 647 PH----HYKPSPERYGKPIPNPLLG 667

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 45.3 bits (106), Expect = 6e-05
 Identities = 20/132 (15%), Positives = 32/132 (24%), Gaps = 33/132 (25%)

Query: 12  PAKPEGPLEVSNIHKDGCT--LKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKD 69
            AKPE       +     T    W   K +  +P+ G+ V                    
Sbjct: 525 LAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQV-------------------- 564

Query: 70  GCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKA 129
             T      +          + +         +P        + V  L P   Y+  V+ 
Sbjct: 565 --TWAEVTTESRQNSLPNSIISQS------QILPSDHY---VLTVPNLRPSTLYRLEVQV 613

Query: 130 LNKEGESEPLET 141
           L   GE      
Sbjct: 614 LTPGGEGPATIK 625

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score =  136 bits (344), Expect = 3e-34
 Identities = 43/235 (18%), Positives = 77/235 (32%), Gaps = 17/235 (7%)

Query: 190 RMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDD 249
                +  G  +   E    +   +   +   +P      L    + A+ V L W  P D
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAK-VELRWTPPQD 358

Query: 250 DGGQPIEKYVV--DKMDEATGRWTPAGETEGPV--------TGLEVEGLIPNHKYKFRVR 299
            GG+    Y V  ++    +G   P   +            T + V  L P+  Y F V 
Sbjct: 359 SGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVE 418

Query: 300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGY 359
           A N          + S    +      +P    ++   T  + ++W+ P       +  Y
Sbjct: 419 ARNGVSGLVT---SRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWKY 474

Query: 360 IIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            +  ++K         +TEG +    + DL     Y  +V A+ + G G  S   
Sbjct: 475 EVTYRKKGDSNSYNVRRTEGFS--VTLDDLAPDTTYLVQVQALTQEGQGAGSKVH 527

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 86.8 bits (214), Expect = 6e-18
 Identities = 51/322 (15%), Positives = 85/322 (26%), Gaps = 47/322 (14%)

Query: 146 IARDPYSKYTSVSSLDSHKRSNQPCGSGMV-RKVQHLDYNTKLGVRMAQRADAGFYTVTA 204
             +  ++K  +++  +    S+       +  + + +   T+ G  +A +       + +
Sbjct: 139 FQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIGACVALLS 198

Query: 205 ENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMD 264
             +  K   E+   +   P    G    S     G  +D  V    G +P          
Sbjct: 199 VRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHC------ 252

Query: 265 EATGRWT-PAGETE-GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEA---- 318
              G W  P G+           +         F+  A        P  T  S E     
Sbjct: 253 AVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSC 312

Query: 319 --------------KNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK 364
                           P  +P               VEL WTPP+ +GG   + Y +  +
Sbjct: 313 ECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCE 372

Query: 365 EKYSPIWEKC----------AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD-- 412
           + +    E                       V DL     Y F V A N       S   
Sbjct: 373 QCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSF 432

Query: 413 --------PTAPHIARAKKVSP 426
                    T P   R +  S 
Sbjct: 433 RTASVSINQTEPPKVRLEGRST 454

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 64.4 bits (156), Expect = 7e-11
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 1/83 (1%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
                + +        ++ W+ P       +  Y V            V +T    + + 
Sbjct: 442 TEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSYNVRRTEGFSVTLD 500

Query: 116 GLTPGHEYKFRVKALNKEGESEP 138
            L P   Y  +V+AL +EG+   
Sbjct: 501 DLAPDTTYLVQVQALTQEGQGAG 523

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 59.8 bits (144), Expect = 2e-09
 Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 57  PEGPLEVSNIHKDGC-TLKWNKPKDDGGEPLEGYLVE--KYDPETGVWIPVGK------- 106
           P  P  ++ +       L+W  P+D GG     Y V   +  PE+G   P          
Sbjct: 334 PSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEP 393

Query: 107 ---TREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS 152
                   + V+ L P   Y F V+A N         +F +       +
Sbjct: 394 PHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQT 442

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 25/194 (12%), Positives = 45/194 (23%), Gaps = 22/194 (11%)

Query: 456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515
              E + +     S   FK    +         +     G  +   +  +          
Sbjct: 269 AGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASM 328

Query: 516 VLGC-----------------SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTND 558
                                 L+W PP+D GG     Y V   +             + 
Sbjct: 329 PCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASV 388

Query: 559 KRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT---DKPSAPEGPI 615
           +     +    T +T+  L+      +TV A N                    + P    
Sbjct: 389 RYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVR 448

Query: 616 QWLLTLT--DVTWE 627
               + T   V+W 
Sbjct: 449 LEGRSTTSLSVSWS 462

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  126 bits (318), Expect = 2e-33
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 5/140 (3%)

Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVH 236
           K+ +    + L V      D G Y  TA N  G++S+E  ++  D PS P         +
Sbjct: 68  KIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID--QVEPY 125

Query: 237 AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE---VEGLIPNHK 293
           +    + +  P+  GG PI KY  +        W          +      + GL P   
Sbjct: 126 SSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETT 185

Query: 294 YKFRVRAVNKQGKSEPLTTT 313
           Y  R+ A+N +G  E    +
Sbjct: 186 YAVRLAALNGKGLGEISAAS 205

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  112 bits (282), Expect = 2e-28
 Identities = 35/206 (16%), Positives = 59/206 (28%), Gaps = 28/206 (13%)

Query: 408 GEPSDPTAPHIARAKKVS-PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT 466
              +  ++  + R   +  P +       +    G+       V   P  T  W  +   
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQGPV--AVYTWEGNQVNITCEVFAYPSATISWFRDGQL 58

Query: 467 IISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG------ 518
           + S +    KI N   ++ L+V      D G Y     N  G +     +          
Sbjct: 59  LPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPS 118

Query: 519 ----------CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDY 568
                       ++++ PE  GG PI  Y  E           KW               
Sbjct: 119 IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY-------DAKEASM 171

Query: 569 FTKITIRPLQRSDTAQYTVTATNSQG 594
              +TI  L+   T    + A N +G
Sbjct: 172 EGIVTIVGLKPETTYAVRLAALNGKG 197

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 96.8 bits (241), Expect = 5e-23
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 10/143 (6%)

Query: 275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK 334
                 + LEV     N    +   AVN+ G+    +    +   +    P  P   +++
Sbjct: 70  YNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE---SLEFILVQADT---PSSPSIDQVE 123

Query: 335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG---KVLDLIE 391
            + +   ++ +  PE  GG PI+ Y  E +     +W        +        ++ L  
Sbjct: 124 PY-SSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKP 182

Query: 392 GNQYEFRVLAVNKGGPGEPSDPT 414
              Y  R+ A+N  G GE S  +
Sbjct: 183 ETTYAVRLAALNGKGLGEISAAS 205

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 77.9 bits (192), Expect = 2e-16
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 55  LDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT----- 107
            D      ++    +     +++++P+  GG P+  Y  E       VW           
Sbjct: 111 ADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170

Query: 108 REPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
            E  + + GL P   Y  R+ ALN +G  E    
Sbjct: 171 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 204

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 68.3 bits (167), Expect = 3e-13
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 24/155 (15%)

Query: 551 IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
           I W R       +N   + I N    + + + P   +D   Y  TA N  G++ +   +V
Sbjct: 50  ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109

Query: 604 VTDKPSAPEGP----------IQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDK 653
             D PS+P             +Q+          I  Y  E            + + + K
Sbjct: 110 QADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAE-------WRAVGEEVWHSK 162

Query: 654 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
                       +TI  L+   T    + A N +G
Sbjct: 163 WYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKG 197

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI 709
           N   + I N    + + + P   +D   Y  TA N  G++ +   +V  D PS+P    
Sbjct: 63  NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQ 121

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  132 bits (333), Expect = 3e-32
 Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 14/248 (5%)

Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNV 235
           +      +     V    + DAG Y        G        +V+ +P  P  P ++++V
Sbjct: 214 KVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASV 273

Query: 236 HAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYK 295
            A  + +       +G  PI    V +   A+G W          T  ++  L P+ +Y+
Sbjct: 274 GATYLWIQLNANSINGDGPIVAREV-EYCTASGSWNDR--QPVDSTSYKIGHLDPDTEYE 330

Query: 296 FRVRAVNKQ--GKSEPLTTTASIEAKNPFNQPGK-PGTPEIKDFDTDFVELAWTPPEQNG 352
             V        G   P     ++  +     P + P   E+ +  +  + + W P   N 
Sbjct: 331 ISVLLTRPGEGGTGSP---GPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNV 387

Query: 353 GSP-----IVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP 407
                    V Y  +   +     E    TE   P+  + +L        +++ +N  G 
Sbjct: 388 TRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGR 447

Query: 408 GEPSDPTA 415
            E  +   
Sbjct: 448 KESQELIV 455

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  131 bits (331), Expect = 6e-32
 Identities = 68/471 (14%), Positives = 118/471 (25%), Gaps = 90/471 (19%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
            P  P +++++      ++ N    +G  P+    VE Y   +G W            + 
Sbjct: 263 VPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVE-YCTASGSWNDRQPVDSTSYKIG 321

Query: 116 GLTPGHEYKFRVKALNK--EGESEPLETFSSI-IARDPYSKYTSVSSLDSHKRS------ 166
            L P  EY+  V        G   P     +     DP      +  ++   R       
Sbjct: 322 HLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWE 381

Query: 167 --NQPCGSGMV-------RKVQHLDYNTKLGVRMAQRADAGFYT-------------VTA 204
                                       +  V          +T             +  
Sbjct: 382 PFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLIL 441

Query: 205 ENINGK-DSVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV-- 260
            N  G+ +S E+ V    D P          +   E + L W+ P    G  I  Y +  
Sbjct: 442 MNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYEITY 500

Query: 261 -----DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
                   +      +      G  T     GL P   Y F +RA   +G   P    A+
Sbjct: 501 KAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPP----AT 556

Query: 316 IEAKNPFNQPGKPGTPEIKDFDT--DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
            +     + P  P        +   + V +   P    G  P+  Y I  +E+     +K
Sbjct: 557 NQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGA-PVSVYQIVVEEERPRRTKK 615

Query: 374 ------------------------------CAQTEGDTPKGKVLD-----------LIEG 392
                                          A +        + D           L+  
Sbjct: 616 TTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPY 675

Query: 393 NQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN 443
             Y     A ++       D        A    P    ++ +D  V+   +
Sbjct: 676 KSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQTDHTVKGTKH 726

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  107 bits (267), Expect = 4e-24
 Identities = 86/596 (14%), Positives = 157/596 (26%), Gaps = 104/596 (17%)

Query: 198 GFYTVTAENINGK-------DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDD 250
            FY V  E I          D V+V      +         V     +  T         
Sbjct: 133 NFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRT 192

Query: 251 GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPL 310
                       + +A  +      +   +    V         K+R     + G     
Sbjct: 193 VAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 252

Query: 311 TTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI 370
                ++       P     P++      ++ +       NG  PIV   +E        
Sbjct: 253 YAELVVKE-----PPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS- 306

Query: 371 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR 430
           W    +   D+   K+  L    +YE  VL    G  G    P      R K   P    
Sbjct: 307 WN--DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGG-TGSPGPALRTRTKCADPMRG- 362

Query: 431 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 490
                ++V    + +  I    EP       C+   +     +++   ++  +   +D++
Sbjct: 363 --PRKLEVVEVKSRQITIRW--EPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTE 418

Query: 491 RGDSGI----------YTLAVK--NSWG----------TDKGT-------AKVTVLGCS- 520
                            ++ +   N  G          TD+         +         
Sbjct: 419 NSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEK 478

Query: 521 --LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
             L+W  P    G  I  Y +      +    I     + +   + N  +F       L 
Sbjct: 479 IFLQWREPTQTYG-VITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHF---LFFGLY 534

Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVT---DKPSAPEGPIQWLLTLTD----VTWE---- 627
              T  +T+ A+ ++G          T     PS P   ++  L  TD    V  +    
Sbjct: 535 PGTTYSFTIRASTAKG-FGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHS 593

Query: 628 ----ISNY---------------LQELHSSLMPISLESQYLMNDK--------------- 653
               +S Y                + L    +PI  ++  L+N +               
Sbjct: 594 RGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAA 653

Query: 654 -RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
              TI +   +      PL    + +    A +    +     V V  K +A   P
Sbjct: 654 QPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKP 709

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  101 bits (252), Expect = 2e-22
 Identities = 78/577 (13%), Positives = 148/577 (25%), Gaps = 96/577 (16%)

Query: 93  KYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS 152
           +  P   + +   +      +V   T     K+R     + G       ++ ++ ++P  
Sbjct: 206 RDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI--SNYAELVVKEPPV 263

Query: 153 KYTSVSSLDSHKRS-------NQPCGSGMVRKVQHLDYNTKLGVRMA-QRADAGFYTVT- 203
                                N   G G +     ++Y T  G     Q  D+  Y +  
Sbjct: 264 PIAPPQLASVGATYLWIQLNANSINGDGPIVAR-EVEYCTASGSWNDRQPVDSTSYKIGH 322

Query: 204 ------------AENIN----GKDSVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKV 246
                                G     +        P      L+V  V +  +T+ W+ 
Sbjct: 323 LDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEP 382

Query: 247 PDDDGGQ-PIEKYVVDKMDEATG----RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV 301
              +  +       V    +  G    R   + +TE       +  L P      ++  +
Sbjct: 383 FGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILM 442

Query: 302 NKQGKSEPLTTTASIEAKNPFNQPGKPGTP-EIKDFDTDFVELAWTPPEQNGGSPIVGYI 360
           N +G+ E          +   + PG   T         + + L W  P Q  G  I  Y 
Sbjct: 443 NPEGRKESQELIV----QTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYE 497

Query: 361 IEKKEKYSPIWEKCAQTE-------GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
           I  K   S   E     +       G+        L  G  Y F + A    G G    P
Sbjct: 498 ITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGP---P 554

Query: 414 TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF 473
                            +  + +     +     + V+ +P            +      
Sbjct: 555 ATNQFTTKISAPSMPAYELETPLNQTDNT-----VTVMLKP-----AHSRGAPVSV---- 600

Query: 474 KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAP 533
                                  Y + V+      +      +L C       ++     
Sbjct: 601 -----------------------YQIVVEEE-RPRRTKKTTEILKCYPVPIHFQNASLLN 636

Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 593
            +YY   +   D+            +  TI +   +      PL    + +    A +  
Sbjct: 637 SQYYFAAEFPADSL--------QAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRA 688

Query: 594 GKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISN 630
             +     V V  K +A   P+      TD T + + 
Sbjct: 689 NGETKIDCVQVATKGAATPKPVPEPEKQTDHTVKGTK 725

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 88.3 bits (218), Expect = 3e-18
 Identities = 62/432 (14%), Positives = 125/432 (28%), Gaps = 76/432 (17%)

Query: 330 TPEIKDFDT---DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKV 386
            P++K+ DT   DF     +      G   V   +      +PIW           + ++
Sbjct: 66  LPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAEL 125

Query: 387 -LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFE 445
            +     N Y+     +  G  G  +      +      +P+    ++ +++V AG    
Sbjct: 126 AISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL--RIQNVEVNAGQFAT 183

Query: 446 FDINVIGEPIPTKEWL--CNDITIISKDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVK 502
           F  + IG  +          D+        K+ +  +      V ++ + D+G Y   ++
Sbjct: 184 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 243

Query: 503 NSWGTDKGTAKVTVLG------------------CSLKWNPPEDDGGAPIEYYMVEKMET 544
              G         V+                     ++ N    +G  PI    VE    
Sbjct: 244 TEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA 303

Query: 545 DTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ--GKDQVFIEV 602
                      + + R  +D+    T   I  L      + +V  T     G       +
Sbjct: 304 SG---------SWNDRQPVDS----TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPAL 350

Query: 603 VVTDKPSAPEGPIQWL----LTLTD--VTWE----------ISNY-----LQELHSSLMP 641
               K + P    + L    +      + WE            N       Q      + 
Sbjct: 351 RTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVR 410

Query: 642 ISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT-- 699
             +      +  + TI N+  +T ++++           +   N +G+ +    +V T  
Sbjct: 411 EEVSWDTENSHPQHTITNLSPYTNVSVK-----------LILMNPEGRKESQELIVQTDE 459

Query: 700 DKPSAPEGPIQI 711
           D P A       
Sbjct: 460 DLPGAVPTESIQ 471

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score =  118 bits (298), Expect = 1e-31
 Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
           G   V       DKP  P  P     +H+    + W  P D+GG  I KYVV+  + + G
Sbjct: 4   GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63

Query: 269 -RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGK 327
            +W       G       + L P   Y+ RV  ++  G+S       S+  + P      
Sbjct: 64  NKWEMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVS---ESLLVQTPAVSGPS 118

Query: 328 PG 329
            G
Sbjct: 119 SG 120

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score =  104 bits (260), Expect = 1e-26
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-VWIPVGKTREPEMDVT 115
           P  P     IH     + W+ PKD+GG  +  Y+VE  +   G  W  +      E    
Sbjct: 21  PVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCD 80

Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
            L PG  Y+ RV  ++  G+S   E   S++ + P
Sbjct: 81  RLNPGCFYRLRVYCISDGGQSAVSE---SLLVQTP 112

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 94.0 bits (234), Expect = 4e-23
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIK-DFDTDFVELAWTPPEQNGGSPIVGYIIEK 363
           G S  +  T   +       PG P  P +K    +   ++ W PP+ NGG+ I  Y++E 
Sbjct: 4   GSSGVVEFTTCPDK------PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEM 57

Query: 364 KEKYSP-IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 417
            E  +   WE      G T +     L  G  Y  RV  ++ GG    S+     
Sbjct: 58  AEGSNGNKWEMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 11/104 (10%)

Query: 511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT 570
             K+      + W+PP+D+GGA I  Y+VE  E   G    KW                 
Sbjct: 27  KGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGN---KWEMIYS--------GATR 75

Query: 571 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
           +     L      +  V   +  G+  V   ++V     +    
Sbjct: 76  EHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGPSS 119

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  117 bits (294), Expect = 3e-31
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
           G     +++ ++D+P PP   +K+ +V  E V L W  P DDG   I  Y + K D+ + 
Sbjct: 4   GSSGASIDIQIIDRPGPPQ-IVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSM 62

Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS--IEAKNP 321
            W    E     T   +  L+  ++Y FRV + N  G SE  T T    + A++ 
Sbjct: 63  EWFTVIEH-YHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDG 116

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  112 bits (281), Expect = 2e-29
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           PG P   +I+D   + V L WTPP+ +G + I GY I+K +K S  W             
Sbjct: 18  PGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVI-EHYHRTSA 76

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 427
            + +L+ GN+Y FRV + N  G  E +  T      A+    Y
Sbjct: 77  TITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKIY 119

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 98.6 bits (246), Expect = 1e-24
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-REPEMDV 114
            P   +++ ++  +   L W  PKDDG   + GY ++K D ++  W  V +        +
Sbjct: 19  GPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATI 78

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET--FSSIIARDP 150
           T L  G+EY FRV + N  G SE       S++IARD 
Sbjct: 79  TELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDG 116

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 28/108 (25%)

Query: 504 SWGTDKGTAKVTVLG-----------------CSLKWNPPEDDGGAPIEYYMVEKMETDT 546
           S G+   +  + ++                   +L W PP+DDG A I  Y ++K +  +
Sbjct: 2   SSGSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKS 61

Query: 547 GKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 594
                +W    +           T  TI  L   +   + V + N  G
Sbjct: 62  M----EWFTVIE---HYHR----TSATITELVIGNEYYFRVFSENMCG 98

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  125 bits (315), Expect = 3e-30
 Identities = 57/331 (17%), Positives = 110/331 (33%), Gaps = 35/331 (10%)

Query: 396 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 455
           ++   A N  G    S   A       +V P+ +  +   + +  G +  F  +V G   
Sbjct: 171 QYNCSASNPLGTASSS---AKLTLSEHEVPPFFDL-KPVSVDLALGESGTFKCHVTGTAP 226

Query: 456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515
               W  ++  I     +K+   + +  L V    +GD+G YT    N  G D  +A++ 
Sbjct: 227 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 286

Query: 516 VLGCSLKWNPPEDDGGAPIEYYMVEKMETD-----TG--KVLIKWIR-----TNDKRVTI 563
           V        PP           + +   T       G  ++ + W +         +  +
Sbjct: 287 VQE------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM 340

Query: 564 DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTD 623
             V+    + +  L   D+  YT  A N+ G       + V + P        +      
Sbjct: 341 SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP-------VFRKKPHP 393

Query: 624 VTWEISNYLQ---ELHSSLMPI---SLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTA 677
           V       +    EL  +         + + L + K+  I + ++ T I I  +  +D  
Sbjct: 394 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 453

Query: 678 QYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
           +Y   A+N  G D     + +   P   +  
Sbjct: 454 EYQCKASNDVGSDTCVGSITLKAPPRFVKKL 484

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  112 bits (281), Expect = 5e-26
 Identities = 48/308 (15%), Positives = 96/308 (31%), Gaps = 55/308 (17%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
           +  P   +       V+   +  ++  + G P     W  ++  I    +F++   +   
Sbjct: 288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 347

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
            L++++    DSG YT    N+ G+   +  + V        PP      P     ++  
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRKK-PHPVETLKGA 400

Query: 543 ETD-----TG--KVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 590
           +        G     + W +      + K+  I + ++ T I I  +  +D  +Y   A+
Sbjct: 401 DVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS 460

Query: 591 NSQGKDQVFIEVVVTDKP---------SAPEGPIQWLLTLT---------DVTWEISNYL 632
           N  G D     + +   P         S   G     + L           V W      
Sbjct: 461 NDVGSDTCVGSITLKAPPRFVKKLSDISTVVGE---EVQLQATIEGAEPISVAWFKDK-- 515

Query: 633 QELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV 692
                    I  ES        + I   +    +     + ++  +YT    N  G  + 
Sbjct: 516 -------GEIVRESD------NIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQEC 562

Query: 693 FIEVVVTD 700
           F  + V +
Sbjct: 563 FATLSVLE 570

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  109 bits (275), Expect = 3e-25
 Identities = 48/314 (15%), Positives = 97/314 (30%), Gaps = 63/314 (20%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
           PY   + L  ++   G        V G P     W      + S   +K+   +    L 
Sbjct: 6   PYF-IEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD 545
           +      D G YT   +NS G    +A + +          ++    P     ++ +   
Sbjct: 65  INKVDHSDVGEYTCKAENSVGAVASSAVLVI----------KERKLPPSFARKLKDVHET 114

Query: 546 TGKVL-------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTV 587
            G  +             + W +      +D  +    +     + I    +S   QY  
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNC 174

Query: 588 TATNSQGKDQVFIEVVVTDKPSAP---EGPIQWL------LTLT---------DVTWEIS 629
           +A+N  G      ++ +++    P     P+          T            +TW   
Sbjct: 175 SASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW--- 231

Query: 630 NYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK 689
                        + +++ +       +  V+    +T+  + + D  QYT  A+N  GK
Sbjct: 232 -------------AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278

Query: 690 DQVFIEVVVTDKPS 703
           D    ++ V + P 
Sbjct: 279 DSCSAQLGVQEPPR 292

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 81.4 bits (201), Expect = 3e-16
 Identities = 73/382 (19%), Positives = 124/382 (32%), Gaps = 72/382 (18%)

Query: 164 KRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
            + N+    G   K+  ++    L V    + DAG YT  A N+ GKDS   ++ V + P
Sbjct: 232 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 291

Query: 224 SPPGGPLKVSNVHAEG--VTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE------ 275
                      V  +      + K+    GG P  K            W           
Sbjct: 292 RFIKKLEPSRIV-KQDEHTRYECKI----GGSPEIKV----------LWYKDETEIQESS 336

Query: 276 -----TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE-------AKNPFN 323
                    V  LE+  L       +   A N  G +   +++ S++        K P  
Sbjct: 337 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA---SSSTSLKVKEPPVFRKKPHP 393

Query: 324 QPGKPGTP-EIKDFDTDFVELAWTPPEQNGGSPIV-----GYIIEKKEKYSPIWEKCAQT 377
                G    ++       EL  TPP        V        +   +KY  +      +
Sbjct: 394 VETLKGADVHLE------CELQGTPP------FQVSWHKDKRELRSGKKYKIM------S 435

Query: 378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDI 436
           E       +L++   +  E++  A N  G       +   +     K  P     +LSDI
Sbjct: 436 ENFLTSIHILNVDSADIGEYQCKASNDVG-------SDTCVGSITLKAPPRF-VKKLSDI 487

Query: 437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKRGDSG 495
               G   +    + G    +  W  +   I+   D   I   +    L+   ++  ++G
Sbjct: 488 STVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547

Query: 496 IYTLAVKNSWGTDKGTAKVTVL 517
            YT  +KN  GT +  A ++VL
Sbjct: 548 KYTCQIKNEAGTQECFATLSVL 569

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 11/165 (6%)

Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
           I W +      +     +   +    + I  +  SD  +YT  A NS G       +V+ 
Sbjct: 37  IAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK 96

Query: 606 DKPSAPEGPIQWLLTLTDVTWEISNYLQ-ELHSSLMPI---SLESQYLMNDKRVTIDNVD 661
           ++   P       L     T       +  ++ S         + + L +D  +    + 
Sbjct: 97  ERKLPPS--FARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIH 154

Query: 662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
               + I    +S   QY  +A+N  G      ++ +++    P 
Sbjct: 155 NVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF 199

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score =  112 bits (281), Expect = 1e-29
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 314 ASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
            S  +  P      P    ++D       L W PP++ G   I GY++E   + S  W  
Sbjct: 1   GSSGSSGP---TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVP 57

Query: 374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
             +   +     V DL  G +  FRV+ VN  G  EP+    P   R    S 
Sbjct: 58  ANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score =  106 bits (266), Expect = 1e-27
 Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            S P     V +V     TL W+ PD  G   I+ Y+V+   E +  W PA +      G
Sbjct: 9   TSAPQHL-TVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG 326
             V+ L    +  FRV  VN  G+SEP T    +  +      G
Sbjct: 68  FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSSG 111

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMD 113
                L V ++     TLKW  P   G   ++GYLVE     +  W+P  K         
Sbjct: 10  SAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFT 69

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
           V  L  G    FRV  +N  G SEP      +  R+ 
Sbjct: 70  VKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRES 106

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 20/98 (20%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
            +LKW PP+  G   I+ Y+VE     +     +W+  N + V           T++ L 
Sbjct: 25  TTLKWRPPDRIGAGGIDGYLVEYCLEGSE----EWVPANKEPVER------CGFTVKDLP 74

Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
                 + V   N  G            +P+    P+ 
Sbjct: 75  TGARILFRVVGVNIAG----------RSEPATLLQPVT 102

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  123 bits (311), Expect = 2e-29
 Identities = 95/586 (16%), Positives = 171/586 (29%), Gaps = 113/586 (19%)

Query: 169 PCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGG 228
                +V   +    +  L ++ A   D+G Y     N  G +SVE  + V    S    
Sbjct: 290 TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID 349

Query: 229 PLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG-LEVEG 287
           P   +           +      G PI+             W   G+  G     L +E 
Sbjct: 350 PPTQTVDFGRPAVFTCQYT----GNPIKTV----------SWMKDGKAIGHSESVLRIES 395

Query: 288 LIPNHKYKFRVRAVNKQGKSEPLTTTASIE----------AKNPFNQPGKPGTPEIKDFD 337
           +    K  ++    N +  +E    +A ++           +    +  +PG        
Sbjct: 396 VKKEDKGMYQCFVRNDRESAE---ASAELKLGGRFDPPVIRQAFQEETMEPGPS------ 446

Query: 338 TDFVELAWTPPEQNGGSPIV-------GYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLI 390
              V L         G+P         G  I   ++Y  + +             +  + 
Sbjct: 447 ---VFLKCVAG----GNPTPEISWELDGKKIANNDRYQ-VGQYVTVNGDVVSYLNITSVH 498

Query: 391 EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDIN 449
             +   ++ +A +K G        A H A+      PYI   Q+    + AG        
Sbjct: 499 ANDGGLYKCIAKSKVG-------VAEHSAKLNVYGLPYI--RQMEKKAIVAGETLIVTCP 549

Query: 450 VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD-SKRGDSGIYTLAVKNSWG-T 507
           V G PI +  W  ++  +    + K+  +     L + +  +  D   YT   KN  G +
Sbjct: 550 VAGYPIDSIVWERDNRALPINRKQKVFPNGT---LIIENVERNSDQATYTCVAKNQEGYS 606

Query: 508 DKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD-----TGK---VLIKWIR---- 555
            +G+ +V V+        P     A  E                G    + I W      
Sbjct: 607 ARGSLEVQVMV------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQA 660

Query: 556 -TNDKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG 613
            + D  +T   V      +TI  ++ S    +T  A N  G  Q    + V   P     
Sbjct: 661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILE 720

Query: 614 PIQWL------LTLT---------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTID 658
           P            +           VTW+ +               E + L     + ++
Sbjct: 721 PTDKAFAQGSDAKVECKADGFPKPQVTWKKAV---------GDTPGEYKDLKKSDNIRVE 771

Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPS 703
                  + +  +Q+++   Y   A N  G      I + V     
Sbjct: 772 EGT----LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHH 813

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  115 bits (288), Expect = 1e-26
 Identities = 75/571 (13%), Positives = 156/571 (27%), Gaps = 98/571 (17%)

Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSP-----PGGPLKVSNVHAEGVT 241
           + +   +      +   A    G  ++       D+  P     P   +  SN  + G  
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSN--STGAE 58

Query: 242 LDWKVPDD---------DGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNH 292
           ++ K   +           G  +      +   + G+                       
Sbjct: 59  IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ----- 113

Query: 293 KYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNG 352
              +   A N+ G    ++    + A              +   ++    +    P    
Sbjct: 114 --VYACLARNQFGSI--ISRDVHVRAVVAQYYEADVNKEHVIRGNS--AVIKCLIPSFVA 167

Query: 353 G-SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGN-----------QYEFRVL 400
               +V +  +++E Y P         G    GK L L  G               ++  
Sbjct: 168 DFVEVVSWHTDEEENYFP---------GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCR 218

Query: 401 AVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRAGSNFEFDINVIGEPIP 456
             ++         T   +   + +S      ++  +         S         G P+P
Sbjct: 219 TKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP 278

Query: 457 TKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514
              W         K    + +     S  L + D+   DSG Y   V NS G +     +
Sbjct: 279 VFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338

Query: 515 TVLGCSLKW-NPPEDDGGAPIEYYMVEKMETDTGKVL-------------IKWIRTNDKR 560
           TV    L     P                  D G+               + W++ + K 
Sbjct: 339 TVTA-PLSAKIDPPT-------------QTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKA 383

Query: 561 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLT 620
           +        + + I  +++ D   Y     N +   +   E+ +  +   P   I+    
Sbjct: 384 IGHSE----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPV--IRQAFQ 437

Query: 621 LTDVTWEISNYLQ-ELHSSLMPI---SLESQYLMNDKRVTI-----DNVDYFTKITIRPL 671
              +    S +L+     +  P     L+ + + N+ R  +      N D  + + I  +
Sbjct: 438 EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSV 497

Query: 672 QRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
             +D   Y   A +  G  +   ++ V   P
Sbjct: 498 HANDGGLYKCIAKSKVGVAEHSAKLNVYGLP 528

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  103 bits (259), Expect = 5e-23
 Identities = 95/607 (15%), Positives = 168/607 (27%), Gaps = 120/607 (19%)

Query: 161 DSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIV 219
               R     G  +    +  DY         Q   A  Y   A N  G   S +V V  
Sbjct: 84  VPGLRQISSDGKLVFPPFRAEDYR--------QEVHAQVYACLARNQFGSIISRDVHVRA 135

Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI-------EKYVVDKMDEATGRWT- 271
           +          K   +      +   +P               E+       E  G++  
Sbjct: 136 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 195

Query: 272 -PAGETEGPVTGLEVEGLIPNHKY-KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPG 329
            P+GE       L +  + P   Y  ++ R  ++      L+ T              P 
Sbjct: 196 LPSGE-------LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPK 248

Query: 330 TPEIKDFDTDFVELAWTPPEQN-------GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTP 382
              +  FD                      G P+  +   K  + +   +     +    
Sbjct: 249 VVSLAKFDMKTYS-----GSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ 303

Query: 383 KGKVLDLI---EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKV 438
               L +      +  ++  +  N  G                        +       V
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVG-------GESVETVLTVTAPLSA-KIDPPTQTV 355

Query: 439 RAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT 498
             G    F     G PI T  W+ +   I   +            L++   K+ D G+Y 
Sbjct: 356 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQ 405

Query: 499 LAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD-----TG--KVLI 551
             V+N   + + +A++ + G   +++PP        E  M             G     I
Sbjct: 406 CFVRNDRESAEASAELKLGG---RFDPPVIRQA-FQEETMEPGPSVFLKCVAGGNPTPEI 461

Query: 552 KWIR-----TNDKRVTI-----DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 601
            W        N+ R  +      N D  + + I  +  +D   Y   A +  G  +   +
Sbjct: 462 SWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK 521

Query: 602 VVVTDKP--------SAPEGPIQWLLTLT---------DVTWEISNYLQELHSSLMPISL 644
           + V   P        +   G     L +T          + WE  N  + L  +      
Sbjct: 522 LNVYGLPYIRQMEKKAIVAG---ETLIVTCPVAGYPIDSIVWERDN--RALPIN------ 570

Query: 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDKPS 703
             Q +  +  + I+NV+          + SD A YT  A N +G   +  +EV V   P 
Sbjct: 571 RKQKVFPNGTLIIENVE----------RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR 620

Query: 704 APEGPIQ 710
                 +
Sbjct: 621 IIPFAFE 627

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 99.2 bits (247), Expect = 1e-21
 Identities = 62/318 (19%), Positives = 107/318 (33%), Gaps = 61/318 (19%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-----VNDDK 480
           P I +    +  +  G +        G P P   W  +   I + DR+++     VN D 
Sbjct: 430 PVIRQA-FQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488

Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
            + L +      D G+Y    K+  G  + +AK+ V G       P            + 
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG------LPY-----------IR 531

Query: 541 KMETDT---GKVL-------------IKWIRTNDKRVTIDNVDYFTK---ITIRPLQR-S 580
           +ME      G+ L             I W R +++ + I+          + I  ++R S
Sbjct: 532 QMEKKAIVAGETLIVTCPVAGYPIDSIVWER-DNRALPINRKQKVFPNGTLIIENVERNS 590

Query: 581 DTAQYTVTATNSQGKD-QVFIEVVVTDKPSAPEGPIQWLLTL----TDVTWEISNYLQEL 635
           D A YT  A N +G   +  +EV V   P       +           +   +       
Sbjct: 591 DQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP------ 644

Query: 636 HSSLMPISL----ESQYLMNDKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKD 690
               +P+++    + Q +  D  +T   V      +TI  ++ S    +T  A N  G  
Sbjct: 645 -GGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQ 703

Query: 691 QVFIEVVVTDKPSAPEGP 708
           Q    + V   P     P
Sbjct: 704 QFTTPLNVYVPPRWILEP 721

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 78.1 bits (192), Expect = 5e-15
 Identities = 52/359 (14%), Positives = 96/359 (26%), Gaps = 69/359 (19%)

Query: 397 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 456
           F  +A+   G    S   A +   A +  P   ++  + I     +  E +    G P+P
Sbjct: 14  FAAVALIACG----SQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMP 69

Query: 457 TKEWLCNDITIISKDRFKIVNDDKST----KLKVFDS-KRGDSGIYTLAVKNSWGTD--- 508
              W+ +D T +                    +  D  +   + +Y    +N +G+    
Sbjct: 70  EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 129

Query: 509 -------------KGTAKVTVL-GCS--LKWNPPEDDGGAPIEYY-MVEKMETDTGKVLI 551
                            K  V+ G S  +K   P              +       +   
Sbjct: 130 DVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD------EEENY 183

Query: 552 KWIRTNDKRVTIDNVDYFTKITIRPLQRSDTA-QYTVTATNSQGKDQV---FIEVVVTDK 607
                 D +  +       ++ IR +   D    Y     +    +         +V  +
Sbjct: 184 FPGAEYDGKYLVLPS---GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE 240

Query: 608 PSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLE-----------------SQYLM 650
           P +   P         V+    +      SS   ++L                       
Sbjct: 241 PISSAVP-------KVVSLAKFDMKTYSGSS--TMALLCPAQGYPVPVFRWYKFIEGTTR 291

Query: 651 NDKRVTIDNVDYFTKI-TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
               V  D V   +    I+     D+ +Y     NS G + V   + VT   SA   P
Sbjct: 292 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP 350

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score =  110 bits (278), Expect = 4e-29
 Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 318 AKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT 377
             +  +    PG P   +     V L W  PE  GG  I  YI+EK++  +  W K   +
Sbjct: 4   HHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFS 63

Query: 378 EGDTPKGKVLDLIEGNQYEFRVLAVNK-GGPGEPSDPTAPHIAR 420
                +  V  L E   YEFRV+A N  G    PS+P+     R
Sbjct: 64  NILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score =  101 bits (253), Expect = 8e-26
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
             PPG P    N+    VTL W  P+  GG  I  Y+V+K D   GRW  A  +      
Sbjct: 11  IDPPGKP-VPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 69

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGK-SEPLTTTASIEAKNPF 322
             V GL  +  Y+FRV A N  G  S P   + +I  ++  
Sbjct: 70  FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 93.9 bits (234), Expect = 4e-23
 Identities = 39/99 (39%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR--EPEMD 113
           DP G     NI +   TLKW KP+  GG  +  Y+VEK D   G W+    +   E E  
Sbjct: 12  DPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71

Query: 114 VTGLTPGHEYKFRVKALNKEGE-SEPLETFSSIIARDPY 151
           V+GLT    Y+FRV A N  G  S P E   +I  RD  
Sbjct: 72  VSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 19/98 (19%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
            +LKW  PE  GG  I  Y+VEK +   G    +W++ N   +         + T+  L 
Sbjct: 27  VTLKWAKPEYTGGFKITSYIVEKRDLPNG----RWLKANFSNILE------NEFTVSGLT 76

Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
                ++ V A N+ G             PS P   I 
Sbjct: 77  EDAAYEFRVIAKNAAGAIS---------PPSEPSDAIT 105

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score =  110 bits (277), Expect = 6e-29
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 2/112 (1%)

Query: 209 GKDSVEVEVIVLDKPSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
           G       + V   P  P  P   +S V    + L W  P D G  P+ +Y+++  +   
Sbjct: 4   GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSENNA 62

Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
                    +   T + V+GL+P   Y+FR+ AVN  GK +    T  +   
Sbjct: 63  PWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLP 114

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score =  102 bits (257), Expect = 3e-26
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTP--EIKDFDTDFVELAWTPPEQNGGSPIVGYIIE 362
           G S     +A +  +     P  P  P   +   +   + L WT P  +G SP++ YI+E
Sbjct: 1   GSSGSSGRSAHLRVRQL---PHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILE 56

Query: 363 KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 417
             E  +P     A  +       V  L+    Y+FR+ AVN  G G+ S  T   
Sbjct: 57  MSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 111

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 80.9 bits (200), Expect = 2e-18
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 57  PEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEMD 113
           PE P   +S + +    L W KP  DG  PL  Y++E  +      + +     +   + 
Sbjct: 21  PEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVT 79

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
           V GL P   Y+FR+ A+N  G+ +  + 
Sbjct: 80  VKGLVPARSYQFRLCAVNDVGKGQFSKD 107

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 31/126 (24%)

Query: 506 GTDKGTAKVTVLG-------------------CSLKWNPPEDDGGAPIEYYMVEKMETDT 546
           G+   +A + V                      +L W  P  DG +P+  Y++E  E + 
Sbjct: 4   GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNA 62

Query: 547 GKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV-VVT 605
                  +               T +T++ L  + + Q+ + A N  GK Q   +   V+
Sbjct: 63  P----WTVLLASVDPK------ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS 112

Query: 606 DKPSAP 611
              S P
Sbjct: 113 LPESGP 118

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score =  111 bits (279), Expect = 3e-28
 Identities = 25/204 (12%), Positives = 62/204 (30%), Gaps = 19/204 (9%)

Query: 224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
            P    +  +        + W  P       I KY++    + +          G +   
Sbjct: 2   GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58

Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEPL------------TTTASIEAKNPFNQPGKPGTP 331
            ++GL P   Y+ ++ ++ + G  E               T+ ++  +     P    + 
Sbjct: 59  TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118

Query: 332 EIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIE 391
            + +       ++W          + G+ +E +        +            + DL+ 
Sbjct: 119 SVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLP 174

Query: 392 GNQYEFRVLAVNKGGPGEPSDPTA 415
           G +Y   V  +++ G       T+
Sbjct: 175 GRKYIVNVYQISEDGEQSLILSTS 198

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 67.8 bits (165), Expect = 5e-13
 Identities = 30/263 (11%), Positives = 72/263 (27%), Gaps = 73/263 (27%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-----IPVGKTREPE 111
            E  +  +    +   ++WN P+      +  Y++      +        IP        
Sbjct: 4   VEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNS--- 57

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCG 171
             + GL PG  Y+ ++ ++ + G  E      +  +        +V+   +         
Sbjct: 58  YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVA-- 115

Query: 172 SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLK 231
                                        + +   I    S  V              + 
Sbjct: 116 ----------------------------TSESVTEIT-ASSFVVSW------VSASDTV- 139

Query: 232 VSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPN 291
                  G  ++++   ++G +P    +            P+  T   +  L      P 
Sbjct: 140 ------SGFRVEYE-LSEEGDEPQYLDL------------PSTATSVNIPDLL-----PG 175

Query: 292 HKYKFRVRAVNKQGKSEPLTTTA 314
            KY   V  +++ G+   + +T+
Sbjct: 176 RKYIVNVYQISEDGEQSLILSTS 198

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 62.0 bits (150), Expect = 4e-11
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 3/120 (2%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
                      +   + W  P+    S I  YI+  + K S    K A   G      + 
Sbjct: 5   EVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIK 61

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFD 447
            L  G  YE +++++ + G  E +       + +  V+      + +       ++    
Sbjct: 62  GLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVT 121

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  108 bits (272), Expect = 3e-28
 Identities = 23/109 (21%), Positives = 40/109 (36%)

Query: 318 AKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT 377
             +  +    P    +       V + W PP+  G + + GY++E   + +  W    + 
Sbjct: 1   GSSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKD 60

Query: 378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
             D  K  +  L    +   RV AVN  G  EP   + P + +    S 
Sbjct: 61  LIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSS 109

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  104 bits (261), Expect = 7e-27
 Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            SPP     V +V    VT+ W+ PD  G   ++ YV++   E T  W  A +     T 
Sbjct: 8   TSPPTLL-TVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG 326
             + GL  + K   RV+AVN  G SEP   +  I  K      G
Sbjct: 67  FTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSSG 110

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 97.4 bits (243), Expect = 2e-24
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMD 113
            P   L V ++     T++W  P   G   L+GY++E     T  WI   K    + +  
Sbjct: 9   SPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFT 68

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
           +TGL    +   RVKA+N  G SEP      I+ ++ 
Sbjct: 69  ITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKES 105

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 12/97 (12%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
            +++W PP+  G A ++ Y++E     T      WI  N   +        TK TI  L 
Sbjct: 24  VTMRWRPPDHIGAAGLDGYVLEYCFEGTE----DWIVANKDLIDK------TKFTITGLP 73

Query: 579 RSDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEG 613
                   V A N+ G  +   + + ++  +     G
Sbjct: 74  TDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSSG 110

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  112 bits (283), Expect = 7e-28
 Identities = 49/303 (16%), Positives = 95/303 (31%), Gaps = 52/303 (17%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 483
             P+    +   + +  G +  F  +V G       W  ++  I     +K+   + +  
Sbjct: 4   APPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62

Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
           L V    +GD+G YT    N  G D  +A++ V        PP           + +   
Sbjct: 63  LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE------PPRFIKKLEPSRIVKQDEH 116

Query: 544 TD-----TG--KVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN 591
           T       G  ++ + W +         +  +  V+    + +  L   D+  YT  A N
Sbjct: 117 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176

Query: 592 SQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLE------ 645
           + G       + V + P        +      V                 + LE      
Sbjct: 177 AAGSASSSTSLKVKEPP-------VFRKKPHPVETLKG----------ADVHLECELQGT 219

Query: 646 ----------SQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 695
                      + L + K+  I + ++ T I I  +  +D  +Y   A+N  G       
Sbjct: 220 PPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGS 279

Query: 696 VVV 698
           + +
Sbjct: 280 ITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 85.2 bits (211), Expect = 2e-18
 Identities = 31/200 (15%), Positives = 68/200 (34%), Gaps = 31/200 (15%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
           +  P   +       V+   +  ++  + G P     W  ++  I    +F++   +   
Sbjct: 96  QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
            L++++    DSG YT    N+ G+   +  + V                P+       +
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-------------EPPVFRKKPHPV 202

Query: 543 ETDTGKVL-------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQ 584
           ET  G  +             + W +      + K+  I + ++ T I I  +  +D  +
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGE 262

Query: 585 YTVTATNSQGKDQVFIEVVV 604
           Y   A+N  G       + +
Sbjct: 263 YQCKASNDVGSYTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
           K  P   + +   ++   G++   +  + G P     W  +   + S  ++KI++++  T
Sbjct: 190 KEPPVFRK-KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT 248

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
            + + +    D G Y     N  G+      +T+  
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 19/165 (11%)

Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
           I W +            +  V+    +T+  + + D  QYT  A+N  GKD    ++ V 
Sbjct: 37  ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96

Query: 606 DKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLM--PI-----SLESQYLMNDKRVTID 658
           + P       +++  L        +        +   P        +   +    +  + 
Sbjct: 97  EPP-------RFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS 149

Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
            V+    + +  L   D+  YT  A N+ G       + V + P 
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV 194

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 164 KRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
            + N+    G   K+  ++    L V    + DAG YT  A N+ GKDS   ++ V + P
Sbjct: 40  AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 99

Query: 224 S 224
            
Sbjct: 100 R 100

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 29/146 (19%)

Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS----------P 225
            ++  ++    L +      D+G YT  A N  G  S    + V + P            
Sbjct: 146 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL 205

Query: 226 PGGPLKVSNVHAEGV---TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            G  + +     +G     + W        + +          +  ++     +E  +T 
Sbjct: 206 KGADVHLE-CELQGTPPFQVSWHK----DKREL---------RSGKKYKI--MSENFLTS 249

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSE 308
           + +  +      +++ +A N  G   
Sbjct: 250 IHILNVDSADIGEYQCKASNDVGSYT 275

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score =  106 bits (267), Expect = 1e-27
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P +P +      ++ L W+ P        + YI+E +E+ S    K     G+    
Sbjct: 8   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD-GEDLAY 66

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
            V +L    +Y+F+V+A N  G   PS+            S 
Sbjct: 67  TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 94.7 bits (236), Expect = 1e-23
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
               PS P  P  ++      ++L W  P          Y+++  +E +G      + +G
Sbjct: 4   GSSGPSMPASP-VLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKP-KYDG 61

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPG 329
                 V+ L  + KYKF+V A N +GKS P          +        G
Sbjct: 62  EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDS---GPSSG 109

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 91.2 bits (227), Expect = 3e-22
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-REPEMDV 114
                  ++       +L+W+KP     +    Y++E  +  +G          +    V
Sbjct: 9   SMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTV 68

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
             L    +YKF+V A N EG+S P E        D 
Sbjct: 69  KNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDS 104

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
            SL+W+ P          Y++E  E  +G       +                 T++ L+
Sbjct: 24  LSLQWSKPSGTPSDEGISYILEMEEETSG----YGFKPKYDGED-------LAYTVKNLR 72

Query: 579 RSDTAQYTVTATNSQGK 595
           RS   ++ V A NS+GK
Sbjct: 73  RSTKYKFKVIAYNSEGK 89

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score =  109 bits (273), Expect = 2e-27
 Identities = 32/203 (15%), Positives = 56/203 (27%), Gaps = 15/203 (7%)

Query: 213 VEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTP 272
           +      ++ P P    L   ++    + L W          I  Y +  +    G    
Sbjct: 14  LVPRGSHMEVPQPTD--LSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIF 68

Query: 273 AGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPE 332
               +  V    V GL P   Y   V  V   G+S P T T              P    
Sbjct: 69  EDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTA-------VPPPTDLR 121

Query: 333 IKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEG 392
             +   D + + W PP       +  +++      +                 + +L+ G
Sbjct: 122 FTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPG 178

Query: 393 NQYEFRVLAVNKGGPGEPSDPTA 415
            +Y   V +V +     P     
Sbjct: 179 TEYVVSVSSVYEQHESTPLRGRQ 201

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV 260
           +V      G +S    +       PP   L+ +N+  + + + W  P       +  ++V
Sbjct: 93  SVYTVKNGG-ESTPTTLTQQTAVPPPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFLV 147

Query: 261 DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
                                 + +  L+P  +Y   V +V +Q +S PL     
Sbjct: 148 RYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQK 202

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 25/116 (21%), Positives = 33/116 (28%), Gaps = 9/116 (7%)

Query: 300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGY 359
           + +    S  L    S           +P      D     + L WTP      S I+GY
Sbjct: 4   SHHHHHHSSGLVPRGSHME------VPQPTDLSFVDITDSSIGLRWTPLN---SSTIIGY 54

Query: 360 IIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            I        I       +       V  L  G  Y+  V  V  GG   P+  T 
Sbjct: 55  RITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQ 110

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 58.3 bits (141), Expect = 7e-10
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 48  LVEKDRGLDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG 105
           LV +   ++   P  L   +I      L+W          + GY +       G+ I   
Sbjct: 14  LVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFED 70

Query: 106 K--TREPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
              +      VTGL PG +Y   V  +   GES P   
Sbjct: 71  FVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTL 108

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP---E 111
           + P   L  +NI  D   + W  P       L  +LV  Y P          +  P    
Sbjct: 114 VPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVR-YSPVKNEEDVAELSISPSDNA 169

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLET 141
           + +T L PG EY   V ++ ++ ES PL  
Sbjct: 170 VVLTNLLPGTEYVVSVSSVYEQHESTPLRG 199

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score =  106 bits (266), Expect = 2e-27
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP-I 370
           ++ S       + P  P  P I       V + W P   NGG PI  + +E K+      
Sbjct: 5   SSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGD 63

Query: 371 WEKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 421
           W              ++  L +G  Y+FRV A+N  G  EPS P+ P++   
Sbjct: 64  WILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 98.2 bits (245), Expect = 2e-24
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVD-KMDEAT 267
           G    + +   L  P  P  P  +S      V + W  P  +GG PI+ + V+ K  +  
Sbjct: 4   GSSGSQPDHGRLSPPEAPDRP-TISTASETSVYVTWI-PRGNGGFPIQSFRVEYKKLKKV 61

Query: 268 GRWTPAGE-TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNP 321
           G W  A          +E+ GL     YKFRVRA+N  G+SEP   +        
Sbjct: 62  GDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 83.6 bits (207), Expect = 2e-19
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP-ETGVWIPVGKT---REPE 111
           +      +S   +    + W  P+ +GG P++ + VE     + G WI            
Sbjct: 19  EAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLS 77

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
           +++TGL  G  YKFRV+ALN  GESEP       +    
Sbjct: 78  VEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score =  106 bits (267), Expect = 1e-26
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 19/194 (9%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
               P   L+VS+     ++L W+ P        ++Y +  +           E     T
Sbjct: 6   DLDNPKD-LEVSDPTETTLSLRWRRPVA----KFDRYRLTYVS--PSGKKNEMEIPVDST 58

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
              + GL    +Y   + A   + KS+P T   S          G P      D   +  
Sbjct: 59  SFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTV-------VGSPKGISFSDITENSA 111

Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA 401
            ++WTPP     S +  Y +                +G   + K++ L+ G  Y   +++
Sbjct: 112 TVSWTPPR----SRVDSYRVSYVPITGG-TPNVVTVDGSKTRTKLVKLVPGVDYNVNIIS 166

Query: 402 VNKGGPGEPSDPTA 415
           V      EP     
Sbjct: 167 VKGFEESEPISGIL 180

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
            ++ AE    K S    +        P G +  S++     T+ W  P       ++ Y 
Sbjct: 73  ISLVAEKGRHK-SKPTTIKGSTVVGSPKG-ISFSDITENSATVSWTPPRS----RVDSYR 126

Query: 260 VDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA 314
           V  +   TG        +G  T  ++  L+P   Y   + +V    +SEP++   
Sbjct: 127 VSYVP-ITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGIL 180

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 56  DPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD 113
           D + P  LEVS+  +   +L+W +P        + Y +    P                 
Sbjct: 6   DLDNPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKKNEMEIPVDSTSFI 61

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
           + GL  G EY   + A     +S+P   
Sbjct: 62  LRGLDAGTEYTISLVAEKGRHKSKPTTI 89

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 57.8 bits (140), Expect = 7e-10
 Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 62/184 (33%)

Query: 10  TKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKD----------------- 52
           T    P+  LEVS+  +   +L+W +P        + Y +                    
Sbjct: 5   TDLDNPKD-LEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKKNEMEIPVDSTS 59

Query: 53  ---RGLDPE------------------------------GPLEVSNIHKDGCTLKWNKPK 79
              RGLD                                  +  S+I ++  T+ W  P+
Sbjct: 60  FILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPR 119

Query: 80  DDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDVTGLTPGHEYKFRVKALNKEGESE 137
                 ++ Y V  Y P TG    V      +    +  L PG +Y   + ++    ESE
Sbjct: 120 S----RVDSYRVS-YVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESE 174

Query: 138 PLET 141
           P+  
Sbjct: 175 PISG 178

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
              P   E+ D     + L W  P     +    Y +          E   +   D+   
Sbjct: 7   LDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEM--EIPVDSTSF 60

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
            +  L  G +Y   ++A       +P+     
Sbjct: 61  ILRGLDAGTEYTISLVAEKGRHKSKPTTIKGS 92

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  114 bits (286), Expect = 2e-26
 Identities = 72/621 (11%), Positives = 150/621 (24%), Gaps = 120/621 (19%)

Query: 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSN 234
           V +     +   L +      D G Y       +    + V V     P       +   
Sbjct: 76  VTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGV 135

Query: 235 VHA-----EGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE--TEGPVTGLEVEG 287
           V+      + V +            +   +  +  E   R+ P G   +     G  +  
Sbjct: 136 VYITENKNKTVVIPCLGSIS----NLNVSLCARYPE--KRFVPDGNRISWDSKKGFTIPS 189

Query: 288 LIPNHKYKFRVRAVNKQGKSE---PLTTTASIEAKNPFNQPGKP-----GTP-----EIK 334
            + ++       A       +    +         +    P        G         +
Sbjct: 190 YMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 249

Query: 335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLI---- 390
                 ++  W  P              K +    +        G   K  +  L     
Sbjct: 250 TELNVGIDFNWEYPSS------------KHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 297

Query: 391 ----EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEF 446
               +G    +   A +       +   +  +   +K          S ++   G     
Sbjct: 298 TRSDQG---LYTCAASSGLM----TKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 350

Query: 447 DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 506
               +G P P  +W  N I + S    K         L + +    D+G YT+ + N   
Sbjct: 351 PAKYLGYPPPEIKWYKNGIPLESNHTIKA-----GHVLTIMEVSERDTGNYTVILTNPIS 405

Query: 507 TDKGTAKVTV---------------------------LGCSLKWNPPED------DGGAP 533
            +K +  V++                           L C++   PP             
Sbjct: 406 KEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEE 465

Query: 534 IEYYMVEKMETDTGKVLIKW-----------IRTNDKRVTIDNVDYFTKITIRPLQRSDT 582
                 + +         +W           I  N  +  +      T  T+     + +
Sbjct: 466 CANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVS 525

Query: 583 AQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWL-----LTLT---------DVTWEI 628
           A Y   A N  G+ +  I   VT  P     P         ++L          ++TW  
Sbjct: 526 ALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYK 585

Query: 629 SNY----LQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 684
                  +                   +  +  ++ +    + ++     D   Y   A 
Sbjct: 586 LGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQ 645

Query: 685 NSQGKDQVFIEVVVTDKPSAP 705
           + + K +  +   +T      
Sbjct: 646 DRKTKKRHCVVRQLTVLERVA 666

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 92.5 bits (229), Expect = 2e-19
 Identities = 80/620 (12%), Positives = 160/620 (25%), Gaps = 130/620 (20%)

Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP------------- 226
             D      +     + AG     A+  +      + ++V+                   
Sbjct: 178 SWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 237

Query: 227 -GGPL----KVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
            G  L            G+  +W+ P         K+   K+     +     E +  ++
Sbjct: 238 VGEKLVLNCTARTELNVGIDFNWEYPS-------SKHQHKKLVNRDLKTQSGSEMKKFLS 290

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
            L ++G+  + +  +   A +     +  T     E        G     E    +   V
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGER--V 348

Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT---PKGKVLDLIEGNQYEFR 398
            +         G P       K     P+        G      +    D   GN Y   
Sbjct: 349 RIPAKYL----GYPPPEIKWYKNGI--PLESNHTIKAGHVLTIMEVSERD--TGN-YTVI 399

Query: 399 VLAVNKGGPGEPSDP------TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG 452
               N     + S          P I     +SP  +         + G+       V  
Sbjct: 400 --LTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS--------YQYGTTQTLTCTVYA 449

Query: 453 EPIPTK-EWLCNDITI---------------------------------ISKDRFKIVND 478
            P P    W                                        ++K++F ++  
Sbjct: 450 IPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEG 509

Query: 479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV---------------------L 517
              T   +       S +Y     N  G  +      V                     L
Sbjct: 510 KNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSL 569

Query: 518 GCSLKWNPPED-----DGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKI 572
            C+   +  E+      G  P+  ++ E        +   W    +  +  ++ +    +
Sbjct: 570 WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLW--KLNATMFSNSTNDILIM 627

Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYL 632
            ++     D   Y   A + + K +  +   +T        P      L + T  I   +
Sbjct: 628 ELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA--P-TITGNLENQTTSIGESI 684

Query: 633 QELH---SSLMPISLE----SQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN 685
            E+    S   P  +     ++ L+ D  + +   D    +TIR +++ D   YT  A +
Sbjct: 685 -EVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRKEDEGLYTCQACS 741

Query: 686 SQGKDQVFIEVVVTDKPSAP 705
             G  +V    ++       
Sbjct: 742 VLGCAKVEAFFIIEGAQEKT 761

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 91.7 bits (227), Expect = 3e-19
 Identities = 50/350 (14%), Positives = 89/350 (25%), Gaps = 65/350 (18%)

Query: 397 FRVLAVNKGGPGEPS-DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 455
           +  +       G PS     P +             Q   + ++A +  +      G+  
Sbjct: 12  WLCVETRAASVGLPSVSLDLPRL-----------SIQKDILTIKANTTLQI--TCRGQRD 58

Query: 456 PTKEWLCNDITIISKDRFKIVNDDKSTK-LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514
               W  N      +      +D    K L +      D+G Y    + +         V
Sbjct: 59  LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118

Query: 515 TVLGCSLKWNPPEDDGGAPIEYYMVEKME--------TDTGKVLIKWIRTNDKRVTIDNV 566
                S       D     + Y    K +        + +   +    R  +KR   D  
Sbjct: 119 QDYR-SPFIASVSDQ--HGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175

Query: 567 DYFT----KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWL---- 618
                     TI     S        A  +    Q  + +VV       +  +       
Sbjct: 176 RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235

Query: 619 ------LTLT---------DVTW-----EISNYLQELHSSLMPISLESQYLMNDKRVTID 658
                 L L           + +        +  ++L +  +     S+       +TID
Sbjct: 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 295

Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
            V            RSD   YT  A++     +    V V +KP    G 
Sbjct: 296 GV-----------TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS 334

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 89.8 bits (222), Expect = 1e-18
 Identities = 79/578 (13%), Positives = 139/578 (24%), Gaps = 105/578 (18%)

Query: 196 DAGFYTVTAENINGKDSVEVEVIVLDKP--SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQ 253
               +              V    LD P  S     L +        TL         GQ
Sbjct: 8   AVALWLCVETRAASVGLPSVS---LDLPRLSIQKDILTIK----ANTTLQITCR----GQ 56

Query: 254 P---IEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPL 310
                         E     T   +     T L +  +I N    ++         S   
Sbjct: 57  RDLDWLWPNNQSGSEQRVEVTECSDGLFCKT-LTIPKVIGNDTGAYKCFYRETDLASVIY 115

Query: 311 TTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI 370
                  +    +   + G   I +     V +          S +   +  +       
Sbjct: 116 VYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGS----ISNLNVSLCARYP--EKR 169

Query: 371 WEKCAQTEGDTPKGKVLDLIEGNQYE----FRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
           +           K      I              A       + S      +   +    
Sbjct: 170 FVPDGNRISWDSKKGFT--IPSYMISYAGMVFCEAKINDESYQ-SIMYIVVVVGYR--IY 224

Query: 427 YINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW------LCNDITIISKDRFKIVNDDK 480
            +       I++  G     +     E     ++        +    +     K  +  +
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 284

Query: 481 STK----LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEY 536
             K    L +    R D G+YT A  +   T K +  V V           +        
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV----------HEKPFVAFGS 334

Query: 537 YMVEKMETDTGKVL-------------IKWIRTNDKRVTID-NVDYFTKITIRPLQRSDT 582
            M   +E   G+ +             IKW + N   +  +  +     +TI  +   DT
Sbjct: 335 GMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHVLTIMEVSERDT 393

Query: 583 AQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEGP-------------------------- 614
             YTV  TN   K++    + +VV   P   E                            
Sbjct: 394 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453

Query: 615 --IQWL--------LTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFT 664
             I W            +      + Y  E   S+      ++  +N  +  +      T
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513

Query: 665 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
             T+     + +A Y   A N  G+ +  I   VT  P
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGP 551

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 82.5 bits (203), Expect = 2e-16
 Identities = 59/391 (15%), Positives = 106/391 (27%), Gaps = 60/391 (15%)

Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKD--SVEVEVIVLDKPS-PPGGPLKVSNV 235
             +     L +      D G YTV   N   K+  S  V ++V   P       +   + 
Sbjct: 375 HTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS 434

Query: 236 HAEG--VTLD-------------WKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET---- 276
           +  G   TL              W    ++         V   +        + E     
Sbjct: 435 YQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494

Query: 277 --------------EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPF 322
                             T   +     N    ++  AVNK G+ E    +  +      
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER-VISFHVTRGPEI 553

Query: 323 NQPGKPGTPEIKDFD-------TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCA 375
                    E +          + F  L W           VG +     K      K  
Sbjct: 554 TLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLN 613

Query: 376 QTEGDTPKGKVLDLI--------EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 427
            T        +L +         +G  Y     A ++             +   ++V+P 
Sbjct: 614 ATMFSNSTNDILIMELKNASLQDQG-DYVCL--AQDRKTKKRHC--VVRQLTVLERVAPT 668

Query: 428 INRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF 487
           I    L +     G + E      G P P   W  ++ T++      + + +++  L + 
Sbjct: 669 ITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIR 725

Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
             ++ D G+YT    +  G  K  A   + G
Sbjct: 726 RVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 78.3 bits (192), Expect = 4e-15
 Identities = 47/345 (13%), Positives = 95/345 (27%), Gaps = 45/345 (13%)

Query: 396 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 455
            ++                     R+  ++   ++  +  I                  +
Sbjct: 100 AYKCFYRETDL--ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNL 157

Query: 456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515
                          D  +I  D K     +       +G+     K +  + +    + 
Sbjct: 158 NVSLCARYPEKRFVPDGNRISWDSKKG-FTIPSYMISYAGMVFCEAKINDESYQSIMYIV 216

Query: 516 V--------------------------LGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
           V                          L C+ +           I++           K 
Sbjct: 217 VVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV-----GIDFNWEYPSSKHQHKK 271

Query: 550 LIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 609
           L+   R    +   +   + + +TI  + RSD   YT  A++     +    V V +KP 
Sbjct: 272 LVN--RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF 329

Query: 610 APEGPIQWLLTLTDVTWEISNYLQ-ELHSSLMPISLESQYLMNDKRVTID-NVDYFTKIT 667
              G      +L + T      +  +      P   E ++  N   +  +  +     +T
Sbjct: 330 VAFGSGM--ESLVEATVGERVRIPAKYLGYPPP---EIKWYKNGIPLESNHTIKAGHVLT 384

Query: 668 IRPLQRSDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEGPIQ 710
           I  +   DT  YTV  TN   K++    + +VV   P   E  + 
Sbjct: 385 IMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLI 429

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 69.0 bits (168), Expect = 3e-12
 Identities = 23/239 (9%), Positives = 59/239 (24%), Gaps = 46/239 (19%)

Query: 493 DSGIYTLAVKNSWGTDKGTAKVTV-------------------LGCSLKWNPPEDDGGAP 533
              ++      +      +  + +                   + C          G   
Sbjct: 8   AVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCR---------GQRD 58

Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 593
           +++                      +     +  +   +TI  +  +DT  Y      + 
Sbjct: 59  LDWL---WPNNQ------SGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETD 109

Query: 594 GKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ-ELHSSLMPISL-----ESQ 647
               +++ V     P       Q  +         +  +      S + +SL     E +
Sbjct: 110 LASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKR 169

Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
           ++ +  R++ D+       TI     S        A  +    Q  + +VV       +
Sbjct: 170 FVPDGNRISWDSK---KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 225

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 13/51 (25%), Positives = 20/51 (39%)

Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
             +   D N  L +R  ++ D G YT  A ++ G   VE   I+       
Sbjct: 711 SGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 761

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.9 bits (108), Expect = 5e-05
 Identities = 15/149 (10%), Positives = 36/149 (24%), Gaps = 27/149 (18%)

Query: 574 IRPLQRSDTAQYTVTATNSQGKDQVFIEV---VVTDKPS---APEGPIQWLLTLT----- 622
           ++       A +    T +       + +    ++ +              L +T     
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTT---LQITCRGQR 57

Query: 623 DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 682
           D+ W   N                      +     +  +   +TI  +  +DT  Y   
Sbjct: 58  DLDWLWPNNQSGSEQ-------------RVEVTECSDGLFCKTLTIPKVIGNDTGAYKCF 104

Query: 683 ATNSQGKDQVFIEVVVTDKPSAPEGPIQI 711
              +     +++ V     P       Q 
Sbjct: 105 YRETDLASVIYVYVQDYRSPFIASVSDQH 133

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 20/194 (10%), Positives = 49/194 (25%), Gaps = 18/194 (9%)

Query: 132 KEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRM 191
            + E E     S  ++           S++  +  N+   +     +      T   + +
Sbjct: 460 WQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVI 519

Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPS---------PPGGPLKVSNVHAEGV-- 240
                +  Y   A N  G+    +   V   P               + +    A+    
Sbjct: 520 QAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLW-CTADRSTF 578

Query: 241 -TLDWKVPD-----DDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKY 294
             L W            G+       +         T    +   +  +E++      + 
Sbjct: 579 ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG 638

Query: 295 KFRVRAVNKQGKSE 308
            +   A +++ K  
Sbjct: 639 DYVCLAQDRKTKKR 652

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score =  103 bits (258), Expect = 3e-26
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 9/118 (7%)

Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK 364
           G S     + +I +  P   PG P    I +     V L + P   +G + I  +++E +
Sbjct: 1   GSSGS---SGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQ 56

Query: 365 EKYSPIWEKCAQ-----TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 417
                  E+         E D    +V DL     Y FR+  VN  G   PS P+   
Sbjct: 57  VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 114

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 208 NGKDSVEVEV-IVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA 266
           +   S  +   +  + P PP     +SN+    VTL ++ P  DG   I +++V+     
Sbjct: 2   SSGSSGTISSGVPPELPGPPTNL-GISNIGPRSVTLQFR-PGYDGKTSISRWLVEAQVGV 59

Query: 267 TGR---WTPAGE--TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
            G    W    +   E     +EV  L P   Y FR+R VN  G S P   +  I+  
Sbjct: 60  VGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTL 117

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG---VWIPVGK-TREPE 111
            P   L +SNI     TL++ +P  DG   +  +LVE      G    W+ + + + EP+
Sbjct: 19  GPPTNLGISNIGPRSVTLQF-RPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPD 77

Query: 112 MD---VTGLTPGHEYKFRVKALNKEGESEP 138
                V  L P   Y FR++ +N  G S P
Sbjct: 78  ARSMEVPDLNPFTCYSFRMRQVNIVGTSPP 107

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score =  102 bits (257), Expect = 3e-26
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 2/116 (1%)

Query: 211 DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW 270
            S      + D P PP  P +V++V    VTL W+ P   G  P   Y+++   ++    
Sbjct: 4   GSSGKNYDLSDLPGPPSKP-QVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNS 61

Query: 271 TPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG 326
                     T   V GL PN  Y F VRA+N QG S+P   +  +  ++     G
Sbjct: 62  WQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSSG 117

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score =  101 bits (253), Expect = 1e-25
 Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 308 EPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY 367
              ++  + +  +    PG P  P++ D   + V L+W P    G  P   YIIE   + 
Sbjct: 2   SSGSSGKNYDLSDL---PGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQS 57

Query: 368 SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
                +       T    V  L     Y F V A+N  G  +PS  + P   +    S 
Sbjct: 58  VSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSS 116

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 86.3 bits (214), Expect = 2e-20
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP-ETGVWIPVG-KTREPEMD 113
            P    +V+++ K+  TL W +P   G  P   Y++E +    +  W  V    +     
Sbjct: 17  GPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYT 75

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
           V GL P   Y F V+A+N +G S+P      +  +D 
Sbjct: 76  VRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 21/98 (21%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
            +L W P    G  P   Y++E              +T    V        T  T+R L+
Sbjct: 32  VTLSWQPG-TPGTLPASAYIIEAFSQSVS----NSWQTVANHVKT------TLYTVRGLR 80

Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
            +    + V A N QG             PS    P++
Sbjct: 81  PNTIYLFMVRAINPQG----------LSDPSPMSDPVR 108

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score =  102 bits (257), Expect = 3e-26
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
           +G    E+   +  +P  P  P +++N     +TL WK P D  G  I+ +V++  DE  
Sbjct: 3   SGSSGAEIFTTLSCEPDIPNPP-RIANRTKNSLTLQWKAPSD-NGSKIQNFVLE-WDEGK 59

Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
           G         G     ++  L P    KFR+ A N  G S          + 
Sbjct: 60  GNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG 111

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 92.5 bits (230), Expect = 1e-22
 Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK 364
           G S                 P  P  P I +   + + L W  P  + GS I  +++E  
Sbjct: 1   GSSGSSGAEIFTTLSCE---PDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWD 56

Query: 365 EKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 417
           E      E C    G   + K+  L      +FR+ A N  G    S+    +
Sbjct: 57  EGKGN-GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYY 108

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 86.3 bits (214), Expect = 2e-20
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYD-PETGVWIPVGKTREPEMDV 114
           D   P  ++N  K+  TL+W  P  D G  ++ +++E  +    G +       + +  +
Sbjct: 19  DIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKI 77

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET 141
           T L+P    KFR+ A N  G S   E 
Sbjct: 78  TKLSPAMGCKFRLSARNDYGTSGFSEE 104

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 12/76 (15%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
            +L+W  P  D G+ I+ +++E  E        +    + K+  I  +        R   
Sbjct: 34  LTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFR--- 89

Query: 579 RSDTAQYTVTATNSQG 594
                   ++A N  G
Sbjct: 90  --------LSARNDYG 97

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  107 bits (268), Expect = 7e-26
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 24/226 (10%)

Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
           G   +      +     P   + V +V      ++W  P       ++  ++        
Sbjct: 1   GSPGISGGGGGIPVIDGPTQ-ILVRDVSDTVAFVEWTPPRA----KVDFILLKYGLVGGE 55

Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
                   + P++   V+ L P  +Y+  + AV    +S+  +T  + E          P
Sbjct: 56  GGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTE-------IDAP 108

Query: 329 GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL- 387
               +       ++L W   E    +    Y +         + +    +G  P  K   
Sbjct: 109 KNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTL 164

Query: 388 -DLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 426
            DL+ G +Y   + AV       P+      +  +P        S 
Sbjct: 165 TDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSE 210

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  104 bits (262), Expect = 4e-25
 Identities = 41/218 (18%), Positives = 66/218 (30%), Gaps = 21/218 (9%)

Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
            +++A      +S         +   P   L+V +  A  + L+W   +       ++Y 
Sbjct: 83  VSISAVRGTN-ESDASSTQFTTEIDAPKN-LRVGSRTATSLDLEWDNSEA----EAQEYK 136

Query: 260 VDKMDEATGRWTPA--GETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE 317
           V     A  ++      +  GP T   +  L+P  +Y   + AV    +S P T  A  E
Sbjct: 137 VVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTE 196

Query: 318 AKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT 377
                     P    +       + L WT        PI  Y I          E     
Sbjct: 197 -------LDSPRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEV--TV 243

Query: 378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
             D     + DL  G +Y   + A         S   A
Sbjct: 244 PRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDA 281

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 92.6 bits (230), Expect = 6e-21
 Identities = 48/292 (16%), Positives = 90/292 (30%), Gaps = 57/292 (19%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP---E 111
            +GP  + V ++      ++W  P+      ++  L++ Y    G         +P   +
Sbjct: 15  IDGPTQILVRDVSDTVAFVEWTPPRA----KVDFILLK-YGLVGGEGGKTTFRLQPPLSQ 69

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETF------------------SSII-----AR 148
             V  L PG  Y+  + A+    ES+   T                   +S+      + 
Sbjct: 70  YSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSE 129

Query: 149 DPYSKYT---SVSSLDSHKRSNQPCGSGMVR--KVQHLDYNTKLGVRMAQRADAGFYTVT 203
               +Y    S  + + +     P G G      +  L   T+ GV            ++
Sbjct: 130 AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVG-----------IS 178

Query: 204 AENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKM 263
           A   N K S+   +    +   P   L V+      ++L W         PI+ Y +   
Sbjct: 179 AVM-NSKQSIPATMNARTELDSPRD-LMVTASSETSISLIWTKASG----PIDHYRITFT 232

Query: 264 DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
                  +         T   +  L P  +Y   + A   + +S   T  A 
Sbjct: 233 PS--SGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAF 282

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           LD    L V+   +   +L W K       P++ Y +                      +
Sbjct: 197 LDSPRDLMVTASSETSISLIWTKASG----PIDHYRITFTPSSGISSEVTVPRDRTSYTL 252

Query: 115 TGLTPGHEYKFRVKALNKEGESEP 138
           T L PG EY   + A     +S  
Sbjct: 253 TDLEPGAEYIISITAERGRQQSLE 276

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score =  100 bits (250), Expect = 2e-25
 Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           P P   P       A+ + L W  P  DGG PI  Y V+               +G    
Sbjct: 9   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV--YQGSEVE 66

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
             V  L+P   Y FR+RA NK G        
Sbjct: 67  CTVSSLLPGKTYSFRLRAANKMGFGPFSEKC 97

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 98.9 bits (247), Expect = 6e-25
 Identities = 28/91 (30%), Positives = 34/91 (37%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
              P            L+W  P  DGG P+  Y VE    E      V +  E E  V+ 
Sbjct: 12  CLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSS 71

Query: 117 LTPGHEYKFRVKALNKEGESEPLETFSSIIA 147
           L PG  Y FR++A NK G     E      A
Sbjct: 72  LLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 98.2 bits (245), Expect = 1e-24
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 325 PGKPGTPEIKDFDTD-FVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
           PG    P ++       ++L W PP  +GGSPI  Y +E          +    +G   +
Sbjct: 9   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV--YQGSEVE 66

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 419
             V  L+ G  Y FR+ A NK G G  S+      A
Sbjct: 67  CTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 12/84 (14%)

Query: 511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT 570
             +       L+W PP  DGG+PI  Y VE    +      +                  
Sbjct: 18  QGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKD----EPREVYQGSE--------V 65

Query: 571 KITIRPLQRSDTAQYTVTATNSQG 594
           + T+  L    T  + + A N  G
Sbjct: 66  ECTVSSLLPGKTYSFRLRAANKMG 89

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score =  104 bits (260), Expect = 3e-25
 Identities = 36/227 (15%), Positives = 70/227 (30%), Gaps = 16/227 (7%)

Query: 225 PPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
             G P         +  +  +W  P          Y V    +       A   +  V  
Sbjct: 5   DLGAPQNPNAKAAGSRKIHFNWLPPSGK----PMGYRVKYWIQGDSESE-AHLLDSKVPS 59

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE 342
           +E+  L P   Y+ +V A   QG+      ++ +  +     P +PG        +   +
Sbjct: 60  VELTNLYPYCDYEMKVCAYGAQGEGPY---SSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 116

Query: 343 LAWTPPEQNGGSPIVGYII-----EKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
           L+W  P +  G  I  Y +         +     +K            + +L E   Y +
Sbjct: 117 LSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRY 175

Query: 398 RVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNF 444
            V A N  G G   +       + K+         +  +  ++G ++
Sbjct: 176 TVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDY 222

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 18/163 (11%)

Query: 200 YTVTAENINGKDSVEVEVIVL----DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI 255
             V A    G +     ++      + PS PG  L  + V +    L W  P +  G  I
Sbjct: 73  MKVCAYGAQG-EGPYSSLVSCRTHQEVPSEPGR-LAFNVVSSTVTQLSWAEPAETNG-EI 129

Query: 256 EKYVV-----DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPL 310
             Y V     +  +   G              L +E L  +  Y++ V+A N  G     
Sbjct: 130 TAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPER 189

Query: 311 TTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE-----LAWTPP 348
               ++  + P      P  P+I   D    E     L ++  
Sbjct: 190 EAIINLATQ-PKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDD 231

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 12/95 (12%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP---- 110
           P  P  L  + +      L W +P +  G  +  Y V  Y        P+G  ++     
Sbjct: 99  PSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYEVC-YGLVNDDNRPIGPMKKVLVDN 156

Query: 111 ----EMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
                + +  L     Y++ VKA N  G     E 
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA 191

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 42/208 (20%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
               W PP          Y V+       +     + +    V + N+  +    ++   
Sbjct: 22  IHFNWLPPSGK----PMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMK--- 74

Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVT----DKPSAPEGPIQWLLTLTD--VTWE----- 627
                   V A  +QG +  +  +V      + PS P      +++ T   ++W      
Sbjct: 75  --------VCAYGAQG-EGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAET 125

Query: 628 ---ISNYL---QELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTV 681
              I+ Y      ++    PI    + L+++ +           + I  L+ S   +YTV
Sbjct: 126 NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKN--------RMLLIENLRESQPYRYTV 177

Query: 682 TATNSQGK-DQVFIEVVVTDKPSAPEGP 708
            A N  G   +    + +  +P  P   
Sbjct: 178 KARNGAGWGPEREAIINLATQPKRPMSI 205

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 8/108 (7%)

Query: 521 LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRS 580
           L W  P +  G    Y +   +  D  + +    +                + I  L+ S
Sbjct: 117 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKN------RMLLIENLRES 170

Query: 581 DTAQYTVTATNSQGK-DQVFIEVVVTDKPSAPEG-PIQWLLTLTDVTW 626
              +YTV A N  G   +    + +  +P  P   PI   + + D   
Sbjct: 171 QPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQS 218

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score =  110 bits (276), Expect = 3e-25
 Identities = 64/441 (14%), Positives = 118/441 (26%), Gaps = 58/441 (13%)

Query: 30  TLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGY 89
            +   K + +  +       ++    +            D   L+W          L G+
Sbjct: 444 EVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGF 503

Query: 90  LVE-------------------------KYDPETGVWIPVGKTREPEMDVTGLTPGHEYK 124
           ++                                           P   + GL P  +Y 
Sbjct: 504 MLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYA 563

Query: 125 FRVKALNKEGESEPLETFSSIIA------------RDPYSKYTSVSSL----DSHKRSNQ 168
             VK L    +        S I              DP S   S S +          N 
Sbjct: 564 IFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG 623

Query: 169 P--------CGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
                           ++  LDY  K     ++     F +  ++  N  +  +      
Sbjct: 624 NITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECC 683

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPD---DDGGQPIEKYVVDKMDEATGRWTPAGETE 277
             P      LK     +   T +  + +           + + D  +          E  
Sbjct: 684 SCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKV 743

Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQP--GKPGTPEIKD 335
                L + GL     Y+  ++A N+    E  +  A + A+           G    + 
Sbjct: 744 VNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEI 803

Query: 336 FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG--KVLDLIEGN 393
           F+ + V L W  P++  G  IV Y +  +         C   +    +   ++  L  GN
Sbjct: 804 FENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN 862

Query: 394 QYEFRVLAVNKGGPGEPSDPT 414
            Y  R+ A +  G G  ++PT
Sbjct: 863 -YSVRIRATSLAGNGSWTEPT 882

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 80.3 bits (197), Expect = 1e-15
 Identities = 57/487 (11%), Positives = 116/487 (23%), Gaps = 79/487 (16%)

Query: 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTL 242
           YN KL   +++       + T       D                          + + L
Sbjct: 430 YNPKL--CLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILL 487

Query: 243 DWKVPDDDGGQPIEKYVV-----------------------DKMDEATGRWTPAGETEGP 279
            W+       + +  +++                         + +              
Sbjct: 488 RWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQN 547

Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS--IEAKNPFNQPGKPGTPEIKDFD 337
             G  + GL P  +Y   V+ +             S  I  +     P  P  P      
Sbjct: 548 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNS 607

Query: 338 TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
           +  + L W PP    G  I  Y++  + +                K      +    +  
Sbjct: 608 SSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDYCLKGLK------LPSRTWSP 660

Query: 398 RVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFE-FDINVIGEPIP 456
              + +     +     +     +   +      +L +   R    FE +  NV+  P P
Sbjct: 661 PFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFR--KTFEDYLHNVVFVPRP 718

Query: 457 TKE-------WLCND-------ITIISKDRFKIVNDDKSTK---------LKVFDSKRGD 493
           +++           +         +++K+   I      T              + +   
Sbjct: 719 SRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSV 778

Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDGGAPIEYYMVEKMETDTGK 548
           +   +         D     VT          L W  P++  G  I  Y V        +
Sbjct: 779 AAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEE 837

Query: 549 VLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF---IEVVVT 605
           +           +            +R L         + AT+  G +  +       VT
Sbjct: 838 LH-LCDTRKHFALE-------RGCRLRGLSPG-NYSVRIRATSLAG-NGSWTEPTYFYVT 887

Query: 606 DKPSAPE 612
           D    P 
Sbjct: 888 DYLDVPS 894

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 52.2 bits (124), Expect = 5e-07
 Identities = 53/471 (11%), Positives = 100/471 (21%), Gaps = 122/471 (25%)

Query: 319 KNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK------------ 366
            +  +   +           D + L W P        ++G+++  KE             
Sbjct: 463 GDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQD 522

Query: 367 -----------YSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG-----PGEP 410
                        P          + P   +  L    QY   V  +          G  
Sbjct: 523 ACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAK 582

Query: 411 SD----------PTAPHIARAKKVS----------PYINRDQLSDIKVRAGSNFEFDINV 450
           SD          P+ P    +   S          P      ++   V      E     
Sbjct: 583 SDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELF 642

Query: 451 IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510
             +       L +               +     K   S+  DS     +   +      
Sbjct: 643 ELDYCLKGLKLPSRTWSPP--------FESEDSQKHNQSEYEDSAGECCSCPKTDSQILK 694

Query: 511 TAKVTVLGCSLKWNPPEDDG------GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID 564
             + +       +     +                     +  +        N + + I 
Sbjct: 695 ELEESSF--RKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVIS 752

Query: 565 NVDYFTKITIRPLQRSDTAQYTVTATNSQGK-------DQVFIEVVVTDKPSAPEGPIQW 617
            + +FT   I            + A N             V    +   K     GP+  
Sbjct: 753 GLRHFTGYRIE-----------LQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTH 801

Query: 618 LLTLTD---VTWE--------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKI 666
            +   +   + W+        I  Y             E  Y    +R   + +      
Sbjct: 802 EIFENNVVHLMWQEPKEPNGLIVLY-------------EVSY----RRYGDEELHLCDTR 844

Query: 667 TIRPLQRSDTA--------QYTVTATNSQGKDQVF---IEVVVTDKPSAPE 706
               L+R               + AT+  G +  +       VTD    P 
Sbjct: 845 KHFALERGCRLRGLSPGNYSVRIRATSLAG-NGSWTEPTYFYVTDYLDVPS 894

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 41.8 bits (97), Expect = 8e-04
 Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 33/221 (14%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYF--------- 569
             L+W P        +  +M+   E     V     +      +   VD           
Sbjct: 485 ILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPK 544

Query: 570 ----TKITIRPLQRSDTAQYTVTATNSQGKDQVFI-----EVVVT---DKPSAPEGPIQW 617
                   +R L+        V    +   ++         + V      PS P  PI  
Sbjct: 545 SQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISV 604

Query: 618 LLTLTD--VTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRP-LQRS 674
             + +   + W+  +          P    + YL+  +R   D+  +     ++     S
Sbjct: 605 SNSSSQIILKWKPPSD---------PNGNITHYLVFWERQAEDSELFELDYCLKGLKLPS 655

Query: 675 DTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIWMSL 715
            T      + +SQ  +Q   E    +  S P+   QI   L
Sbjct: 656 RTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKEL 696

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score =  102 bits (257), Expect = 4e-25
 Identities = 38/202 (18%), Positives = 61/202 (30%), Gaps = 13/202 (6%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWK---VPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277
           D P  P   ++ S +  + + + W    +P          Y V                 
Sbjct: 2   DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYK-NAN 60

Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP---EIK 334
                  V GL PN  Y+F V     +  S     + +         P  P        K
Sbjct: 61  ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTW---SMTAHGTTFELVPTSPPKDVTVVSK 117

Query: 335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE--KCAQTEGDTPKGKVLDLIEG 392
           +     + + W PP +  G  I GYII      +            G+    ++ +L   
Sbjct: 118 EGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLD 176

Query: 393 NQYEFRVLAVNKGGPGEPSDPT 414
             Y F++ A N  G G  S+  
Sbjct: 177 TPYYFKIQARNSKGMGPMSEAV 198

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 17/89 (19%), Positives = 22/89 (24%), Gaps = 7/89 (7%)

Query: 57  PEGP---LEVSNIHKDGCTLKWNKP---KDDGGEPLEGYLVEKYDPETGVWIP-VGKTRE 109
           P  P   ++ S +  D   + W      K         Y V                   
Sbjct: 4   PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63

Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEP 138
               VTGL P   Y+F V        S  
Sbjct: 64  LSYLVTGLKPNTLYEFSVMVTKGRRSSTW 92

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 72  TLKWNKPKDDGGEPLEGYLVE---KYDPETGVWIPV-GKTREPEMDVTGLTPGHEYKFRV 127
            + W  P +  G  + GY++      + E   W+            +  LT    Y F++
Sbjct: 125 IVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKI 183

Query: 128 KALNKEGESEPLETFS 143
           +A N +G     E   
Sbjct: 184 QARNSKGMGPMSEAVQ 199

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 97.8 bits (244), Expect = 2e-24
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTE-GDTPK 383
           P  P   E+ D     V+L+WTP   +  SPI  +IIE ++          QTE   T  
Sbjct: 17  PNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQT 75

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 421
              L+L     Y FRV+AVN  G   PS+ +  ++ +A
Sbjct: 76  TAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 94.4 bits (235), Expect = 4e-23
 Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 9/126 (7%)

Query: 208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
           +   S      V D P+PP    ++++   + V L W  P DD   PI K++++  D   
Sbjct: 2   SSGSSGPTPAPVYDVPNPPFDL-ELTDQLDKSVQLSWT-PGDDNNSPITKFIIEYEDAMH 59

Query: 268 GRWTPAGETEGPVTG-LEVEGLIPNHKYKFRVRAVNKQGKSEP------LTTTASIEAKN 320
                  +TE   T       L P   Y FRV AVN  GKS P        T AS   KN
Sbjct: 60  KPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKN 119

Query: 321 PFNQPG 326
           P + P 
Sbjct: 120 PTSGPS 125

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD-- 113
           +P   LE+++       L W  P DD   P+  +++E  D      +   +T        
Sbjct: 18  NPPFDLELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT 76

Query: 114 -VTGLTPGHEYKFRVKALNKEGESEP 138
               L+P   Y FRV A+N  G+S P
Sbjct: 77  AQLNLSPYVNYSFRVMAVNSIGKSLP 102

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 95.2 bits (237), Expect = 1e-23
 Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 3/115 (2%)

Query: 405 GGPGEPSDPTAPHIARAKKVSPYINRDQL--SDIKVRAGSNFEFDINVIGEPIPTKEWLC 462
           G  G       P   R     P I   +        + G      +   G+P P   W  
Sbjct: 1   GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60

Query: 463 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
               +    R  +   D  T   V  + R DSG Y L+V+     D  T ++ V+
Sbjct: 61  GGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 58.6 bits (142), Expect = 9e-11
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 551 IKWIRTN----DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
           + W +        RV +   D+ T   +R   RSD+ +Y ++      KD   I + V +
Sbjct: 56  VVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVE 115

Query: 607 KP 608
           K 
Sbjct: 116 KA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 652 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
             RV +   D+ T   +R   RSD+ +Y ++      KD   I + V +K 
Sbjct: 67  TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 15/47 (31%), Positives = 28/47 (59%)

Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
            V+  D++T   VR A R+D+G Y ++ +  N KD+  + + V++K 
Sbjct: 71  HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 94.4 bits (235), Expect = 2e-23
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P   ++ +  +   ++ +  PE  GG PI+ Y  E +     +W        +    
Sbjct: 7   PSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65

Query: 385 ---KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
               ++ L     Y  R+ A+N  G GE S  +
Sbjct: 66  GIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 86.7 bits (215), Expect = 9e-21
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE---T 276
           +D PS P         ++    + +  P+  GG PI KY  +        W         
Sbjct: 4   MDTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61

Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
                 + + GL P   Y  R+ A+N +G  E 
Sbjct: 62  ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI 94

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 57  PEGPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK-----TREP 110
           P  P       +     +++++P+  GG P+  Y  E       VW          + E 
Sbjct: 7   PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 66

Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEP 138
            + + GL P   Y  R+ ALN +G  E 
Sbjct: 67  IVTIVGLKPETTYAVRLAALNGKGLGEI 94

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
             ++++ PE  GG PI  Y  E           KW    +  +          +TI  L+
Sbjct: 22  AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME-------GIVTIVGLK 74

Query: 579 RSDTAQYTVTATNSQG 594
              T    + A N +G
Sbjct: 75  PETTYAVRLAALNGKG 90

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 419 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND 478
             +    P I      D KVRAG + E    V G    T  W+     I   +  K+ N 
Sbjct: 1   GSSGSSGPQI-IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS 59

Query: 479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
           +  +KL +  +++   G YTL V+N  G+ +    +TV+ 
Sbjct: 60  ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
             W++        + + ++N +  +K+TI   ++     YT+   N  G  Q  + + V 
Sbjct: 39  CTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98

Query: 606 DKPSAPEGP 614
           DKP  P G 
Sbjct: 99  DKPDPPAGT 107

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
           +   + + ++N +  +K+TI   ++     YT+   N  G  Q  + + V DKP  P G 
Sbjct: 48  IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
           KV++ +  +KL +  A++   G YT+  EN  G    +V + V+DKP PP G 
Sbjct: 55  KVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 99.9 bits (249), Expect = 3e-23
 Identities = 40/222 (18%), Positives = 61/222 (27%), Gaps = 17/222 (7%)

Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHA--EGVTLDWKVPDDD-GGQPIE 256
            T+T  N+ G  S    + +         P+           + ++W  P +      +E
Sbjct: 76  ATLTVRNLVG-KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILE 134

Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
             V+         W    E            L  +  Y   V  V   G   P     SI
Sbjct: 135 WCVLSDKAPCITDWQQ--EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP----ESI 188

Query: 317 EAKNPFNQPGKPGTPEIKDFDTDFVELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEK 373
           +A      P K  T   K    +   L W       QNG   I  Y I  +       E 
Sbjct: 189 KAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNG--FIRNYTIFYRTIIG--NET 244

Query: 374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
               +    +  +  L     Y  R+ A    G  +  + T 
Sbjct: 245 AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTF 286

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 96.4 bits (240), Expect = 3e-22
 Identities = 43/202 (21%), Positives = 66/202 (32%), Gaps = 20/202 (9%)

Query: 221 DKPS-PPGGPLKVSNVHAEG---VTLDWK-VPDDDGGQPIEKYVVDKMDEATGRWTPAGE 275
           D+PS  P    K+   H +G   V L WK +P  +    I  Y V      +        
Sbjct: 2   DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNY--- 58

Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKD 335
               V   ++   + N +Y   +   N  GKS+     A +       Q   P       
Sbjct: 59  ---TVNATKLTVNLTNDRYLATLTVRNLVGKSDA----AVLTIPACDFQATHPVMDLKAF 111

Query: 336 FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL--DLIEGN 393
              + + + WT P ++    I+ + +   +          Q E  T     L  +L E  
Sbjct: 112 PKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDW---QQEDGTVHRTYLRGNLAESK 168

Query: 394 QYEFRVLAVNKGGPGEPSDPTA 415
            Y   V  V   GPG P    A
Sbjct: 169 CYLITVTPVYADGPGSPESIKA 190

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 32/262 (12%), Positives = 60/262 (22%), Gaps = 30/262 (11%)

Query: 72  TLKW-NKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKAL 130
            L W   P  +    +  Y V     ++ +             +T       Y   +   
Sbjct: 26  QLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NYTVNATKLTVNLTNDRYLATLTVR 81

Query: 131 NKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKR--------SNQPCGSGMVRKVQHLD 182
           N  G+S+                   + +                      +   V    
Sbjct: 82  NLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDK 141

Query: 183 YNTKLGVRMAQRADAGFYT-------------VTAENINGK-DSVEVEVIVLDKPSPPGG 228
                  +         Y              VT    +G      ++  +   P   G 
Sbjct: 142 APCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGP 201

Query: 229 PLKVSNVHAEGVTLDWK-VPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEG 287
            ++   V      L+W  +P D     I  Y +       G  T     +   T   +  
Sbjct: 202 TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTI-FYRTIIGNETAV-NVDSSHTEYTLSS 259

Query: 288 LIPNHKYKFRVRAVNKQGKSEP 309
           L  +  Y  R+ A   +G  + 
Sbjct: 260 LTSDTLYMVRMAAYTDEGGKDG 281

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 15/108 (13%)

Query: 48  LVEKDRGLDPEGPLEV--SNIHKDGCTLKWNKPKDDGGEPLEGYLVEKY-----DPETGV 100
           L           P+    +    +   ++W  P++     ++ Y++E        P    
Sbjct: 92  LTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE----SVKKYILEWCVLSDKAPCITD 147

Query: 101 WIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
           W     T         L     Y   V  +  +G   P     SI A 
Sbjct: 148 WQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP----ESIKAY 191

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 7/78 (8%)

Query: 340 FVELAWTPPEQN-GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR 398
            V+L W           I+ Y +      S +          T        +  ++Y   
Sbjct: 24  TVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTV------NLTNDRYLAT 77

Query: 399 VLAVNKGGPGEPSDPTAP 416
           +   N  G  + +  T P
Sbjct: 78  LTVRNLVGKSDAAVLTIP 95

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNK-PKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD 113
           P     +    + K+   L+W++ P D     +  Y +               +   E  
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYT 256

Query: 114 VTGLTPGHEYKFRVKALNKEGESEP 138
           ++ LT    Y  R+ A   EG  + 
Sbjct: 257 LSSLTSDTLYMVRMAAYTDEGGKDG 281

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 94.5 bits (235), Expect = 3e-23
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 317 EAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ 376
           EA+    +P  P +   +       +L+ T  + +GG+PI+ YI++ + K         +
Sbjct: 1   EAEASMREPSPP-SIHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKK 58

Query: 377 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 427
            +G+     +  L     YE ++ A N+ G  EP+        +   +  +
Sbjct: 59  VQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDH 109

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 92.6 bits (230), Expect = 1e-22
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
            + +PSPP   +       +   L      DDGG PI +Y+V    +         + +G
Sbjct: 5   SMREPSPPS--IHGQPSSGKSFKLSIT-KQDDGGAPILEYIVKYRSKDKEDQWLEKKVQG 61

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
               + +E L     Y+ ++ A N+ G SEP     S+  K
Sbjct: 62  NKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 102

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 74.9 bits (184), Expect = 2e-16
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 55  LDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REP 110
           +    P  +           L     +DDGG P+  Y+V+    +        K    + 
Sbjct: 6   MREPSPPSIHGQPSSGKSFKLSI-TKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD 64

Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
            + +  L     Y+ ++ A N+ G SEP     S+  +  
Sbjct: 65  HIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPN 104

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 13/95 (13%)

Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
            L      DDGGAPI  Y+V+    D              +           I +  LQ 
Sbjct: 25  KLSITKQ-DDGGAPILEYIVKYRSKDKE----DQWLEKKVQGNK------DHIILEHLQW 73

Query: 580 SDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPE 612
           +   +  +TA N  G  +  V+   +        +
Sbjct: 74  TMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKD 108

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P    + +     V L W         P+  Y I+ +   +            T + 
Sbjct: 8   PKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGP-FQEVDGVATTRY 63

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
            +  L   ++Y FRVLAVN  G G PS+    
Sbjct: 64  SIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRA 95

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
             P PP     V+   A  VTL W        +P+  Y +      T       +     
Sbjct: 6   SGPKPPIDL-VVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDG-VAT 60

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
           T   + GL P  +Y FRV AVN  G+  P
Sbjct: 61  TRYSIGGLSPFSEYAFRVLAVNSIGRGPP 89

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIP-VGKTREPEMDV 114
            P   L V+       TL W+       EP+  Y ++     T      V         +
Sbjct: 9   KPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSI 65

Query: 115 TGLTPGHEYKFRVKALNKEGESEP 138
            GL+P  EY FRV A+N  G   P
Sbjct: 66  GGLSPFSEYAFRVLAVNSIGRGPP 89

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 92.9 bits (231), Expect = 1e-22
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 318 AKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT 377
             +  + P  P   ++ +  +   ++ +  PE  GG PI+ Y  E +     +W      
Sbjct: 1   GSSGSSGPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 59

Query: 378 EGDTPKG---KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
             +        ++ L     Y  R+ A+N  G GE S  +  
Sbjct: 60  AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 101

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 82.9 bits (205), Expect = 4e-19
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV-- 280
           PS P         ++    + +  P+  GG PI KY  +        W            
Sbjct: 8   PSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 65

Query: 281 -TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
              + + GL P   Y  R+ A+N +G  E   + AS     P  +P  P
Sbjct: 66  EGIVTIVGLKPETTYAVRLAALNGKGLGEI--SAASEFKTQPVREPSAP 112

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 73.3 bits (180), Expect = 8e-16
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 57  PEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI-----PVGKTREP 110
           P  P ++    +     +++++P+  GG P+  Y  E       VW          + E 
Sbjct: 8   PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 67

Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS 152
            + + GL P   Y  R+ ALN +G  E     +S     P  
Sbjct: 68  IVTIVGLKPETTYAVRLAALNGKGLGEISA--ASEFKTQPVR 107

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
             ++++ PE  GG PI  Y  E           KW    +  +          +TI  L+
Sbjct: 23  AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME-------GIVTIVGLK 75

Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
              T    + A N +G  ++        +P      
Sbjct: 76  PETTYAVRLAALNGKGLGEISAASEFKTQPVREPSA 111

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 91.6 bits (228), Expect = 1e-22
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 483
           + P I       IK++AG     +++ IG P PT  W   D          +     +T 
Sbjct: 1   LKPKI-LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59

Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
           +    +KR DSG Y L VKN  G D+   +V V
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
             W            + +D     T I     +R+D+  Y +   N  G+D+   EV+V
Sbjct: 34  ATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
                 + +D     T I     +R+D+  Y +   N  G+D+   EV+V
Sbjct: 43  AALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 165 RSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
             +          V      T +    A+RAD+G Y +  +N  G+D    EVIV
Sbjct: 38  VGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 21/90 (23%), Positives = 34/90 (37%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P         T F++L W  P  +     + Y +   ++          +     + 
Sbjct: 18  PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 77

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            + +L+    Y FRV+A NK G GE S P 
Sbjct: 78  TIQNLMPATVYIFRVMAQNKHGSGESSAPL 107

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 88.6 bits (220), Expect = 4e-21
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 1/101 (0%)

Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
           G             PS P   +  S V    + L W+ P  D       Y V    E   
Sbjct: 4   GSSGEHAPATTGPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIA 62

Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
           R      +      + ++ L+P   Y FRV A NK G  E 
Sbjct: 63  RERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGES 103

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 70.9 bits (174), Expect = 5e-15
 Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 2/80 (2%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVGKTREPEMDVTGLT 118
           +  S +      L W  P  D       Y V                   E ++ +  L 
Sbjct: 24  VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLM 83

Query: 119 PGHEYKFRVKALNKEGESEP 138
           P   Y FRV A NK G  E 
Sbjct: 84  PATVYIFRVMAQNKHGSGES 103

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 10/95 (10%)

Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
            L W  P  D       Y V   +        +    N             ++TI+ L  
Sbjct: 35  KLTWRTPASDPHGDNLTYSVFYTKEGIA----RERVENTSHPGE------MQVTIQNLMP 84

Query: 580 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
           +    + V A N  G  +    + V  +P +    
Sbjct: 85  ATVYIFRVMAQNKHGSGESSAPLRVETQPESGPSS 119

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 94.8 bits (236), Expect = 2e-22
 Identities = 40/195 (20%), Positives = 84/195 (43%), Gaps = 29/195 (14%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           ++ D+  + G   +    ++G P+P  +W      +I   ++K+ +D ++  L V   ++
Sbjct: 13  EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQ 72

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL- 550
            D G+YT    N  G  + ++K+ +         P+   G P++    EK     G  L 
Sbjct: 73  EDEGVYTCIATNEVGEVETSSKLLLQA------TPQFHPGYPLK----EKYYGAVGSTLR 122

Query: 551 ------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNS 592
                       + W        N + +TI+N +++T + ++ +QR +   +Y V  +N 
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182

Query: 593 QGKDQVFIEVVVTDK 607
            G     ++V + DK
Sbjct: 183 FGTVDAILDVEIQDK 197

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 40/175 (22%)

Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
           IKW R        ++  + +      +T+   ++ D   YT  ATN  G+ +   ++++ 
Sbjct: 39  IKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98

Query: 606 DKPSAPEGPIQWL---------LTLT---------DVTWEISNYLQELHSSLMPISLESQ 647
             P    G              L L           +TW                    +
Sbjct: 99  ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTW----------------FHGQK 142

Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNSQGKDQVFIEVVVTDK 701
            L N + +TI+N +++T + ++ +QR +   +Y V  +N  G     ++V + DK
Sbjct: 143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 11/61 (18%), Positives = 26/61 (42%)

Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
           L+  ++  + +      +T+   ++ D   YT  ATN  G+ +   ++++   P    G 
Sbjct: 48  LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGY 107

Query: 709 I 709
            
Sbjct: 108 P 108

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 96.5 bits (240), Expect = 6e-22
 Identities = 37/321 (11%), Positives = 79/321 (24%), Gaps = 45/321 (14%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKS 481
              P+         +V    N      V   +      W  ++  I   ++    +   +
Sbjct: 5   FTGPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT 62

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIE------ 535
             L + +  + D+GIY + +K+  G DK   K+                           
Sbjct: 63  --LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS 120

Query: 536 ----YYMVEKMETDTGKVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 586
                 +   +      + + W           RV          + I     +D  +Y 
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 180

Query: 587 VTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSL----MPI 642
           +   + +   Q  +++       A     +                             +
Sbjct: 181 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 240

Query: 643 SLE----------------SQYLMNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATN 685
           +L                  + L +D    +          TI  +  +D+ +Y +   N
Sbjct: 241 NLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 300

Query: 686 SQGKDQVFIEVVVTDKPSAPE 706
             G +     V V      PE
Sbjct: 301 KYGSETSDFTVSVF----IPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 34/248 (13%), Positives = 67/248 (27%), Gaps = 36/248 (14%)

Query: 396 EFRVLAVNKGG----PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI 451
            + V+  +  G      +  D     +         ++   L       G      +   
Sbjct: 75  IYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFV-TY 133

Query: 452 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511
                   W  N   I   DR K     +   L++ +    D G Y + + +     + T
Sbjct: 134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 193

Query: 512 AKVTVLGCS--------LKWNPPEDDGGAPIEYYMVEKMETDTGKVL------------- 550
             ++             LK     +   A +   + + +    GK L             
Sbjct: 194 VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253

Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W      + ++D              TI  +  +D+ +Y +   N  G +     V V
Sbjct: 254 VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313

Query: 605 TDKPSAPE 612
                 PE
Sbjct: 314 F----IPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 18/171 (10%)

Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNV 235
            K    D    L +    + DAG Y V  ++  GKD   ++++            K   +
Sbjct: 52  EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKK--I 109

Query: 236 HAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE-----------TEGPVTGLE 284
                 L  +      G  +  +V   +++    W+  G              G    L+
Sbjct: 110 ALSATDLKIQS--TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ 167

Query: 285 VEGLIPNHKYKFRVRAVNKQGKSE---PLTTTASIEAKNPFNQPGKPGTPE 332
           +    PN K K+ +   + +   +    L+  A  EA   F +  +    E
Sbjct: 168 INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE 218

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
           +  D++      D    + I    + D   Y V   + +GKD+  +++V           
Sbjct: 48  ISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEV 105

Query: 709 IQI 711
            + 
Sbjct: 106 CKK 108

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 95.7 bits (238), Expect = 7e-22
 Identities = 50/318 (15%), Positives = 107/318 (33%), Gaps = 69/318 (21%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
             +    LS +++  G +  F    IGEP     +      IIS  R  +  +   ++L 
Sbjct: 5   LQV-TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63

Query: 486 VFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKW-NPPEDDGGAPIEYYMVEKME 543
           ++++   D+GIY     ++ G  +  T  + +    L +                 E  +
Sbjct: 64  IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVVSP----------QEFKQ 112

Query: 544 TDTGKVL----------IKWIRTNDKRVTIDNVDYFTK-----ITIRPLQRSDTAQYTVT 588
            +  +V+          + W+  +++ VT  + + F       + I  + +SD   Y   
Sbjct: 113 GEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 171

Query: 589 ATN-SQGKDQVFIEVVVTDKPSAPEGPIQWLLTLT-------------------DVTWEI 628
               ++G+      +V+ + P A   P Q     T                    ++W  
Sbjct: 172 GRVEARGEIDFRDIIVIVNVPPAISMP-QKSFNATAERGEEMTFSCRASGSPEPAISW-- 228

Query: 629 SNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
                             + +  +++  +      T++T+R +  SD   Y   ATN  G
Sbjct: 229 --------------FRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAG 272

Query: 689 KDQVFIEVVVTDKPSAPE 706
           +D+    + V  +     
Sbjct: 273 EDEKQAFLQVFVQHHHHH 290

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 40/209 (19%), Positives = 74/209 (35%), Gaps = 33/209 (15%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDK 480
                  R+ +S  + + G + E    V   P P   WL ++  +T IS +RF ++ ++ 
Sbjct: 96  YQKLTF-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN- 153

Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
              L++ +  + D GIY    +     +     + V+       PP              
Sbjct: 154 --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV----PPA-----ISMPQKSF 202

Query: 541 KMETDTGKVL-------------IKWIRTNDKRVTIDN----VDYFTKITIRPLQRSDTA 583
               + G+ +             I W R N K +  +         T++T+R +  SD  
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKGSNTELTVRNIINSDGG 261

Query: 584 QYTVTATNSQGKDQVFIEVVVTDKPSAPE 612
            Y   ATN  G+D+    + V  +     
Sbjct: 262 PYVCRATNKAGEDEKQAFLQVFVQHHHHH 290

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 40/181 (22%)

Query: 551 IKWIRTN------DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVV 603
           I W           +RV +      +++TI      D   Y   AT+++G+ Q   + + 
Sbjct: 35  IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 94

Query: 604 VTDKPSAPEGPIQWLLTLTD---------------VTWEISNYLQELHSSLMPISLESQY 648
           +  K +  E          +               V+W   N           ++  S  
Sbjct: 95  IYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHN---------EEVTTIS-- 143

Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN-SQGKDQVFIEVVVTDKPSAPEG 707
              D R  +   +    + I  + +SD   Y       ++G+      +V+ + P A   
Sbjct: 144 ---DNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISM 197

Query: 708 P 708
           P
Sbjct: 198 P 198

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
            K      NT+L VR    +D G Y   A N  G+D  +  + V  +  
Sbjct: 239 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 95.8 bits (238), Expect = 8e-22
 Identities = 41/311 (13%), Positives = 93/311 (29%), Gaps = 41/311 (13%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
               ++ + ++      +  F+ +    P     W  + ++     R ++ +    TK+ 
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPI---------- 534
             D    D GIY+  V ++ G           L   L  +        P+          
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121

Query: 535 --EYYMVEKMETDTGKVLIKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQY 585
             +     + E  +G   + +I            ++ ID      ++ +  LQ  D   Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181

Query: 586 TVTATNSQGKDQVFIEVVVTDKPS-APEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL 644
           T    + +  +   + +V         E   Q    +         YL    +    + L
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLL 241

Query: 645 E-----------------SQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 687
           +                  + +  D++    +      + I    + D   Y V   + +
Sbjct: 242 KCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC--TLLITEFSKKDAGIYEVILKDDR 299

Query: 688 GKDQVFIEVVV 698
           GKD+  +++V 
Sbjct: 300 GKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 70.4 bits (172), Expect = 3e-13
 Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 32/240 (13%)

Query: 396 EFRVLAVNKGGPGE-----PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV 450
            +     +  G          +         +   P +       +++       F +  
Sbjct: 72  IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131

Query: 451 -IGEPIPTKEWLCNDITIISKDRFKI--VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507
                     ++ N+  I    ++K+    +    ++ +   +  D G YT  +++   T
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT 191

Query: 508 DKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL----------------- 550
           +  T  +            E      I       +E  + +V                  
Sbjct: 192 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE 251

Query: 551 --IKWIRTNDKRVTIDN----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
             I W + +++ +++D      D    + I    + D   Y V   + +GKD+  +++V 
Sbjct: 252 THIVWYK-DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 38/263 (14%), Positives = 80/263 (30%), Gaps = 25/263 (9%)

Query: 275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG--KSEPLTTTASIEAKNPFNQPGKPGTPE 332
           E++G  T +  + L  +    +     +  G   S  +            ++   P  P 
Sbjct: 52  ESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPV 111

Query: 333 IKDFDTDFVE----LAWTPPEQNGGSPIVGYIIEKKE-KYSPIWEKCAQTEGDTPKGKVL 387
             +   + +E      W   E+  G+  V YI  +KE    P ++          +  + 
Sbjct: 112 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME 171

Query: 388 DLIEGNQYEFRVLAVNKGG-------------PGEPSDPTAPHIARAKKVSPYINRDQLS 434
            L + ++  +     +                     +         +K  P+    +  
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF--VEYL 229

Query: 435 DIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
             +V    N      V      T   W  ++  I   ++      D    L + +  + D
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKD 287

Query: 494 SGIYTLAVKNSWGTDKGTAKVTV 516
           +GIY + +K+  G DK   K+  
Sbjct: 288 AGIYEVILKDDRGKDKSRLKLVD 310

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW 371
           ++ S +++     P  P            + ++W  P      P+ GY +E +       
Sbjct: 5   SSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGEL 62

Query: 372 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            +            V DL+  + Y FRV A ++ G G   +  
Sbjct: 63  HRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV 105

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 88.6 bits (220), Expect = 3e-21
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 8/122 (6%)

Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
           G        +    P  P   L  S +    + + W+ P  +   P++ Y V+      G
Sbjct: 4   GSSGSHDSRLTAGVPDTPTR-LVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGG 60

Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
                       T + VE L+PNH Y FRVRA +++G         +IE+     Q   P
Sbjct: 61  ELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES-----QVSGP 115

Query: 329 GT 330
            +
Sbjct: 116 SS 117

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 72.8 bits (179), Expect = 1e-15
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD-- 113
           D    L  S +      + W +P+ +   PL+GY VE      G    +      +    
Sbjct: 19  DTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHRLNIPNPAQTSVV 76

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
           V  L P H Y FRV+A ++EG     E 
Sbjct: 77  VEDLLPNHSYVFRVRAQSQEGWGREREG 104

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
             + W  P  +   P++ Y VE    + G    +  R N            T + +  L 
Sbjct: 34  LRVSWQEPRCER--PLQGYSVEYQLLNGG----ELHRLNIPNPA------QTSVVVEDLL 81

Query: 579 RSDTAQYTVTATNSQGK-DQVFIEVVVTDKPSAP 611
            + +  + V A + +G   +    + +  + S P
Sbjct: 82  PNHSYVFRVRAQSQEGWGREREGVITIESQVSGP 115

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 94.1 bits (234), Expect = 3e-21
 Identities = 49/322 (15%), Positives = 97/322 (30%), Gaps = 62/322 (19%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
           +  P   + +  D    +G    F     G+P P   W      + S+    I  D+ + 
Sbjct: 4   EEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62

Query: 483 K-LKVFDSKRG-DSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
             L++   +   D  +Y    +NS G     AK+TVL         +   G P      +
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL------REDQLPSGFPNIDMGPQ 116

Query: 541 KMETDTGKVL-------------IKWIR--------TNDKRVTIDNVDYFTKITIRPLQR 579
               +  +               I W +         ++ R+          + I   + 
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEE 173

Query: 580 SDTAQYTVTATNSQG-KDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSS 638
           +D  +Y   ATNS G +      + V  +  AP    ++ +            +    + 
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVQNVAP----RFSILPMSHE------IMPGGNV 223

Query: 639 LMP----------IS--LESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS 686
            +           +     ++ L  +  + +          +      D+A YT  A +S
Sbjct: 224 NITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRN------VLELTDVKDSANYTCVAMSS 277

Query: 687 QGKDQVFIEVVVTDKPSAPEGP 708
            G  +   ++ V   P A    
Sbjct: 278 LGVIEAVAQITVKSLPKAGTKH 299

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 76.0 bits (187), Expect = 3e-15
 Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 24/208 (11%)

Query: 420 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 479
           +     P I         V             G P P   W  + + +        +   
Sbjct: 103 QLPSGFPNI-DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL 161

Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKGTAKVTVLGCSLKWNPPEDDGGAPIEYYM 538
           +S  L++  S+  D G Y     NS G      A + V    ++   P            
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR---VQNVAPR------FSILP 212

Query: 539 VEKMETDTGKVL------------IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 586
           +       G V             +KW++   + +T ++     +  +      D+A YT
Sbjct: 213 MSHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDLTPEDDMPVGRNVLELTDVKDSANYT 271

Query: 587 VTATNSQGKDQVFIEVVVTDKPSAPEGP 614
             A +S G  +   ++ V   P A    
Sbjct: 272 CVAMSSLGVIEAVAQITVKSLPKAGTKH 299

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 401 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 460
           A N  G    S        R + V+P  +       ++  G N       +G P+P  +W
Sbjct: 183 ATNSAGVRYSSPANL--YVRVQNVAPRFSI-LPMSHEIMPGGNVNITCVAVGSPMPYVKW 239

Query: 461 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
           +     +  +D   +       +  +  +   DS  YT    +S G  +  A++TV  
Sbjct: 240 MQGAEDLTPEDDMPV------GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKS 291

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 88.3 bits (219), Expect = 3e-21
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           P+ P   L+    H    TL WK P      P + Y+++  D   G++       G  T 
Sbjct: 10  PATPILQLEECCTHNNSATLSWKQPPLSTV-PADGYILELDDGNGGQFREV--YVGKETM 66

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEP 309
             V+GL  N  Y  RV+A NK G S  
Sbjct: 67  CTVDGLHFNSTYNARVKAFNKTGVSPY 93

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 87.9 bits (218), Expect = 4e-21
 Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
           P   LE    H +  TL W +P      P +GY++E  D   G +  V   +E    V G
Sbjct: 13  PILQLEECCTHNNSATLSWKQPPLSTV-PADGYILELDDGNGGQFREVYVGKETMCTVDG 71

Query: 117 LTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
           L     Y  RVKA NK G S   +T     +   
Sbjct: 72  LHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGS 105

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 81.7 bits (202), Expect = 7e-19
 Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 4/110 (3%)

Query: 318 AKNPFNQPGKP-GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ 376
           + +    P  P    E      +   L+W  P  +   P  GYI+E  +     + +   
Sbjct: 3   SGSSGPVPATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREV-- 59

Query: 377 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
             G      V  L   + Y  RV A NK G    S       +     S 
Sbjct: 60  YVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGPSS 109

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 13/93 (13%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
            +L W  P      P + Y++E  + + G+   +     +   T+D + + +    R   
Sbjct: 27  ATLSWKQPPLSTV-PADGYILELDDGNGGQFR-EVYVGKETMCTVDGLHFNSTYNAR--- 81

Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
                   V A N  G       +V+     + 
Sbjct: 82  --------VKAFNKTGVSPYSKTLVLQTSEGSG 106

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 87.9 bits (218), Expect = 6e-21
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK 364
           G S      +S         P  P         + FV L+W PP +  G  I  + +   
Sbjct: 4   GSSGKPAIPSSSVL------PSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFS 56

Query: 365 EKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            +          T+  + +  V +L     Y FRV+A N+ GPGE S P 
Sbjct: 57  REGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPI 106

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 80.2 bits (198), Expect = 3e-18
 Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
           G             PS P   +    V +  V L W+ P +  G  I+ + V    E   
Sbjct: 4   GSSGKPAIPSSSVLPSAPRD-VVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDN 61

Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
           R      T+     L V  L P   Y FRV A N+ G  E 
Sbjct: 62  RERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGES 102

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR--EPEM 112
           P  P  +    +      L W  P +  G  ++ + V            +  T+    ++
Sbjct: 18  PSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDNRERALNTTQPGSLQL 76

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEP 138
            V  L P   Y FRV A N+ G  E 
Sbjct: 77  TVGNLKPEAMYTFRVVAYNEWGPGES 102

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 96.1 bits (239), Expect = 7e-21
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 217 VIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET 276
           V  + +P PP  P  + N+  E V L WK P  DGG  +  Y ++K +   G W+P  ++
Sbjct: 4   VADVPEPEPPRFP-IIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS 62

Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK 334
               T   +EGL    +Y+FR+ A NK G+S+P   TA +       +  +    + +
Sbjct: 63  --RYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQ 118

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 91.4 bits (227), Expect = 2e-19
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P  P I++   + V L+W PP  +GGS +  Y IEK+E     W  CA++       
Sbjct: 10  PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS--RYTYT 67

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 423
            +  L  G QYEFR++A NK G  +P +PTAP +    +
Sbjct: 68  TIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDE 106

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 88.0 bits (218), Expect = 3e-18
 Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 4/154 (2%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
           +P     + NI  +   L W  P  DGG  +  Y +EK +   G W P  K+R     + 
Sbjct: 11  EPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTIE 70

Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMV 175
           GL  G +Y+FR+ A NK G+S+P E  + ++      K      +D   +  +  G+   
Sbjct: 71  GLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSS 130

Query: 176 RKVQHLDYNTKLGVRMAQRADAG----FYTVTAE 205
               ++    K                 Y +  E
Sbjct: 131 NYDNYVFDIWKQYYPQPVEIKHDHVLDHYDIHEE 164

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 2/121 (1%)

Query: 396 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 455
                +  +    +          R++    +I +      +V  G +  F   VI    
Sbjct: 454 RISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVK--PYGTEVGEGQSANFYCRVIASSP 511

Query: 456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515
           P   W  +D  +    ++    +     L +   K  D G YT+  KNS+GT +    + 
Sbjct: 512 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571

Query: 516 V 516
           V
Sbjct: 572 V 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 12/77 (15%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
             L W PP  DGG+ +  Y +EK E   G     W      R        +T  TI  L+
Sbjct: 26  VILSWKPPALDGGSLVTNYTIEKREAMGG----SWSPCAKSR--------YTYTTIEGLR 73

Query: 579 RSDTAQYTVTATNSQGK 595
                ++ + A N  G+
Sbjct: 74  AGKQYEFRIIAENKHGQ 90

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 95.5 bits (237), Expect = 9e-21
 Identities = 44/347 (12%), Positives = 93/347 (26%), Gaps = 55/347 (15%)

Query: 401 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-E 459
              +G     S+     +  A K  P ++    +   +R G  F     +          
Sbjct: 188 VDQEGK-SVLSEKFILKVRPAFKAVPVVSV-SKASYLLREGEEFTVTCTIKDVSSSVYST 245

Query: 460 WLCNDITIISKDRFKIVNDDKSTK-----LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514
           W   +     ++++   +           L +  ++  DSG++     N++G+   T  +
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305

Query: 515 TVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL--------------IKWIRTN--- 557
            V+                I   +   +  + G+ +               +WI  N   
Sbjct: 306 EVVD------KGF----INIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTF 355

Query: 558 -------DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 610
                   K     N+ Y +++ +  L+ ++   YT   +NS     +   V V  KP  
Sbjct: 356 TDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI 415

Query: 611 PEGPIQWLLTLT---------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVD 661
                     L           + W      ++  S+    S+    +            
Sbjct: 416 LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSA----SVLPVDVQTLNSSGPPFGK 471

Query: 662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
              + +I              A N  GK   +              P
Sbjct: 472 LVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 76.2 bits (187), Expect = 1e-14
 Identities = 38/313 (12%), Positives = 79/313 (25%), Gaps = 63/313 (20%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
             +  +  ++      +   P  T   L            + + D K+  +     +   
Sbjct: 122 RSLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYH 180

Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL--- 550
                 +V    G    + K  +                P+            G+     
Sbjct: 181 RLCLHCSVDQE-GKSVLSEKFIL-------KVRPAFKAVPVVSVSKASYLLREGEEFTVT 232

Query: 551 -----------IKWIR------TNDKRVTIDNVDYFTKI----TIRPLQRSDTAQYTVTA 589
                        W R        +K  +  + D+  +     TI   + +D+  +   A
Sbjct: 233 CTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYA 292

Query: 590 TNSQGKDQVFIEVVVTDKPSAPEGPIQWLL-------------------TLTDVTWEISN 630
            N+ G   V   + V DK      P+                             W   N
Sbjct: 293 NNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN 352

Query: 631 YLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 690
                       + + +     +     N+ Y +++ +  L+ ++   YT   +NS    
Sbjct: 353 ---------RTFTDKWEDYPKSENE--SNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA 401

Query: 691 QVFIEVVVTDKPS 703
            +   V V  KP 
Sbjct: 402 AIAFNVYVNTKPE 414

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 62.4 bits (151), Expect = 3e-10
 Identities = 49/320 (15%), Positives = 96/320 (30%), Gaps = 52/320 (16%)

Query: 416 PHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI 475
           P ++  +   P I+    SD+ VR G          G      +W          +    
Sbjct: 27  PSVSPGEPSPPSIH-PGKSDLIVRVGDEIRLLCTDPGFV----KWT--------FEILDE 73

Query: 476 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIE 535
            N++K  +     ++  ++G YT   K+       +  V V   +  +       G    
Sbjct: 74  TNENKQNEWITEKAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFLVDRSLYGKEDN 130

Query: 536 YYMVEKMETDTGKVLIKWIRTNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNS 592
             +V    TD             K +  D     D    I I+ ++R+        + + 
Sbjct: 131 DTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQ 190

Query: 593 QGKDQVFIEVVVTDKPSAPEGPIQWL------------LTLT----------DVTWEISN 630
           +GK  +  + ++  +P+    P+  +             T+T            TW+  N
Sbjct: 191 EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKREN 250

Query: 631 YLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 690
              +L                   +TI +            + +D+  +   A N+ G  
Sbjct: 251 SQTKLQEKYNSWHHGDFNYERQATLTISSA-----------RVNDSGVFMCYANNTFGSA 299

Query: 691 QVFIEVVVTDKPSAPEGPIQ 710
            V   + V DK      P+ 
Sbjct: 300 NVTTTLEVVDKGFINIFPMI 319

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 11/140 (7%)

Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS----PPGGPLK 231
               ++ Y ++L +   +  + G YT    N +   ++   V V  KP            
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGM 425

Query: 232 VSNVHAEGV---TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGL 288
           +    A G    T+DW        +     +   +        P G+    V    ++  
Sbjct: 426 LQ-CVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKL---VVQSSIDSS 481

Query: 289 IPNHKYKFRVRAVNKQGKSE 308
              H      +A N  GK+ 
Sbjct: 482 AFKHNGTVECKAYNDVGKTS 501

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHA-E 238
           + +    L +  A+  D+G +   A N  G  +V   + V+DK      P+  + V   +
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVND 327

Query: 239 GVTLDWKV 246
           G  +D  V
Sbjct: 328 GENVDLIV 335

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 85.4 bits (211), Expect = 4e-20
 Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 13/104 (12%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK------------YSPIWE 372
              P  P +     + V L W  P  N G PIV + ++ +                    
Sbjct: 3   TYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61

Query: 373 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
           K     G +    V DL   + Y FR+LAV      + S+ +A 
Sbjct: 62  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAK 105

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 74.2 bits (182), Expect = 4e-16
 Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVD-KMDEATGRWTPAGET----- 276
             PP  P  V+ +  E V L W VP +  G PI  + V  +M      W    +      
Sbjct: 3   TYPPTPP-NVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60

Query: 277 ------EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
                  G      V  L P H Y+FR+ AV     ++ 
Sbjct: 61  PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 99

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 68.0 bits (166), Expect = 5e-14
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYD--------------PETGVW 101
            P  P  V+ +  +   L+W  P++  G P+  + V+                 P     
Sbjct: 4   YPPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 62

Query: 102 IPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
                 +     VT L P H Y+FR+ A+    +++ 
Sbjct: 63  WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 99

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTND-----KRVTIDNVDYFTKIT 573
             L+W  P +  G PI  + V+       K    W  TND     K      +      +
Sbjct: 19  VMLRWMVPRN-DGLPIVIFKVQYRMVGKRK---NWQTTNDNIPYGKPKWNSELGKSFTAS 74

Query: 574 IRPLQRSDTAQYTVTATNSQGK 595
           +  L+   T ++ + A  S   
Sbjct: 75  VTDLKPQHTYRFRILAVYSNND 96

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 87.9 bits (218), Expect = 5e-20
 Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 30/204 (14%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKI-VNDDKS 481
           ++P+    +L ++ VR  SN      V G P P  +W      II+   +++I       
Sbjct: 3   MAPHFKE-ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
            +L +      D+ +Y +   N  G+  GTA + V        P +     P     +  
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV------PAKIH--LPKTLEGMGA 113

Query: 542 METDTGKVL-------------IKWIR-----TNDKRVTI-DNVDYFTKITIRPLQRSDT 582
           +    G+V+             I W +      N+    +     + + +    ++R D 
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDA 173

Query: 583 AQYTVTATNSQGKDQVFIEVVVTD 606
             Y V A N  G DQ  +E+ V D
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVAD 197

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 419 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND 478
             AK   P      +  +    G      I   G+P P   W      I +   ++++  
Sbjct: 98  VPAKIHLPKTLE-GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT 156

Query: 479 -DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
              ++ +     +R D+G Y +  KN +G D+ T ++ V
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 48/180 (26%)

Query: 551 IKWIRTNDKRVTIDNVDY--------FTKITIRPLQRSDTAQYTVTATNSQGKDQ--VFI 600
           +KW R   K +  D + Y        + ++ I  +   D   Y V ATN  G       +
Sbjct: 36  VKWYR-QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94

Query: 601 EVVVTDKPSAPEGPIQWLLTLT-------------------DVTWEISNYLQELHSSLMP 641
           EV V  K   P+  ++ +  +                     +TW               
Sbjct: 95  EVEVPAKIHLPK-TLEGMGAVHALRGEVVSIKIPFSGKPDPVITW--------------- 138

Query: 642 ISLESQYLMNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700
                  + N+    +     + + +    ++R D   Y V A N  G DQ  +E+ V D
Sbjct: 139 -QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
            + + +     +R DAGFY V A+N  G D   VE+ V D
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 92.7 bits (230), Expect = 9e-20
 Identities = 81/556 (14%), Positives = 142/556 (25%), Gaps = 105/556 (18%)

Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNV 235
           ++Q  + N  L +    R D   Y    +N      S  V + VL  P  P      ++ 
Sbjct: 156 RLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSY 215

Query: 236 HA-EGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKY 294
            + E + L           P           A   W   G  +     L +  +  N+  
Sbjct: 216 RSGENLNLSCHAA----SNP----------PAQYSWFVNGTFQQSTQELFIPNITVNNSG 261

Query: 295 KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGS 354
            +  +A N        TT  +I       +P           D D V L           
Sbjct: 262 SYTCQAHNSDTGLN-RTTVTTITVYAEPPKPFITSNNSNPVEDEDAVAL-----TCEPEI 315

Query: 355 PIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE----FRVLAVNKGGPGEP 410
               Y+     +  P+  +   +       + L  +          +     N+      
Sbjct: 316 QNTTYLWWVNNQSLPVSPRLQLSND----NRTL-TLLSVTRNDVGPYECGIQNELSVDH- 369

Query: 411 SDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK 470
           SDP   ++       P       S    R G N     +    P     WL +       
Sbjct: 370 SDPVILNV----LYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT 425

Query: 471 DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDG 530
               I N               +SG+YT    NS      T   T+   +     P+   
Sbjct: 426 QELFISN-----------ITEKNSGLYTCQANNSASGHSRTTVKTITVSA---ELPKPSI 471

Query: 531 GAPIEYYMVEKM------ETDTGKVLIKWIRTNDKRVTIDNVDYFTK----ITIRPLQRS 580
            +     + +K       E +       W   N + + +      +     +T+  + R+
Sbjct: 472 SSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV-NGQSLPVSPRLQLSNGNRTLTLFNVTRN 530

Query: 581 DTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGPIQWL-------LTLT---------D 623
           D   Y     NS   ++   + + V   P  P              L L+          
Sbjct: 531 DARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQ 590

Query: 624 VTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTA 683
            +W I+   Q+    L                            I  +  ++   Y    
Sbjct: 591 YSWRINGIPQQHTQVL---------------------------FIAKITPNNNGTYACFV 623

Query: 684 TNSQGKDQVFIEVVVT 699
           +N        I   +T
Sbjct: 624 SNLATGRNNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 84.6 bits (209), Expect = 4e-17
 Identities = 71/540 (13%), Positives = 148/540 (27%), Gaps = 59/540 (10%)

Query: 184 NTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEG--V 240
           N  L ++   + D GFYT+     +   +    +  V  +   P      S    +   V
Sbjct: 70  NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAV 129

Query: 241 TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
               +       Q      +  ++  +   +P  +       L +  +  N    ++   
Sbjct: 130 AFTCEPE----TQDAT--YLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCET 183

Query: 301 VNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYI 360
            N        + +  +      + P             + + L+         +P   Y 
Sbjct: 184 QNPVS--ARRSDSVILNVLYGPDAPTISPLNTSYRSGEN-LNLSCHAA----SNPPAQYS 236

Query: 361 IEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
                     W      +  T +  + ++   N   +   A N       +  T   +  
Sbjct: 237 ----------WFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYA 286

Query: 421 AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 480
                P       +   V              +      W+ N+ ++    R ++ ND++
Sbjct: 287 E---PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV-NNQSLPVSPRLQLSNDNR 342

Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKWNPPEDDGGAPIEYYMV 539
           +  L +    R D G Y   ++N    D      + VL        P+D   +P   Y  
Sbjct: 343 T--LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY------GPDDPTISPSYTYYR 394

Query: 540 EKMETD-----TG--KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS 592
             +                 W+  +              + I  +   ++  YT  A NS
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLI-DGNIQQHTQE-----LFISNITEKNSGLYTCQANNS 448

Query: 593 QGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ-ELHSSLMPIS--LESQYL 649
                      +T     P+ P         V  + +     E  +        +  Q L
Sbjct: 449 ASGHSRTTVKTITVSAELPK-PSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSL 507

Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGP 708
               R+ + N +    +T+  + R+D   Y     NS   ++   + + V   P  P   
Sbjct: 508 PVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIIS 565

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 72/495 (14%), Positives = 126/495 (25%), Gaps = 70/495 (14%)

Query: 234 NVHAEG---VTLDW-KVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLI 289
            VH          W K    DG + I  YV+       G      E   P   L ++ +I
Sbjct: 20  LVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNII 79

Query: 290 PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVEL---AWT 346
            N    + +  +     +E  T    +  + P        +  ++D D   V       T
Sbjct: 80  QNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDA--VAFTCEPET 137

Query: 347 PPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY---EFRVLAVN 403
                       Y+     +  P+  +   + G     + L L    +     ++    N
Sbjct: 138 QDAT--------YLWWVNNQSLPVSPRLQLSNG----NRTLTLFNVTRNDTASYKCETQN 185

Query: 404 KGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN 463
                  SD    ++                +   R+G N     +    P     W  N
Sbjct: 186 PVS-ARRSDSVILNVLYGPDAP----TISPLNTSYRSGENLNLSCHAASNPPAQYSWFVN 240

Query: 464 DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKW 523
                S     I N   +           +SG YT    NS      T   T+      +
Sbjct: 241 GTFQQSTQELFIPNITVN-----------NSGSYTCQAHNSDTGLNRTTVTTITV----Y 285

Query: 524 NPPEDDGGAPIEYYMVEKMET-------DTGKVLIKWIRTNDKRVTIDNVDYFT---KIT 573
             P            VE  +        +       W   N        +        +T
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLT 345

Query: 574 IRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPSAPEGPIQWLLTL--TDVTWEISN 630
           +  + R+D   Y     N    D    + + V   P  P     +       +++     
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA 405

Query: 631 YLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 690
                 +S  P      +L++              + I  +   ++  YT  A NS    
Sbjct: 406 ------ASNPPAQY--SWLIDGNIQQHTQE-----LFISNITEKNSGLYTCQANNSASGH 452

Query: 691 QVFIEVVVTDKPSAP 705
                  +T     P
Sbjct: 453 SRTTVKTITVSAELP 467

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 75.8 bits (186), Expect = 2e-14
 Identities = 48/307 (15%), Positives = 88/307 (28%), Gaps = 50/307 (16%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
           P  +    +   V       F      +   T  W  N+ ++    R ++ N +++  L 
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRT--LT 167

Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMET 544
           +F+  R D+  Y    +N     +  +  + VL        P+    +P+          
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNVLY------GPDAPTISPLNTSYRS---- 217

Query: 545 DTGKVL-------------IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN 591
             G+ L               W   N          +   IT      +++  YT  A N
Sbjct: 218 --GENLNLSCHAASNPPAQYSWFV-NGTFQQSTQELFIPNIT-----VNNSGSYTCQAHN 269

Query: 592 SQGKDQV--FIEVVVTDKPSAPEGPIQWLLTLTD---VTWEISNYLQELHSSLMPIS--L 644
           S           + V  +P  P         + D   V         E           +
Sbjct: 270 SDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTC-----EPEIQNTTYLWWV 324

Query: 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPS 703
            +Q L    R+ + N +    +T+  + R+D   Y     N    D    + + V   P 
Sbjct: 325 NNQSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPD 382

Query: 704 APEGPIQ 710
            P     
Sbjct: 383 DPTISPS 389

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 46/324 (14%), Positives = 87/324 (26%), Gaps = 81/324 (25%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR-- 491
           +   V  G      ++ + + +    W   +    ++     V   +        S R  
Sbjct: 7   TPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREI 66

Query: 492 --------------GDSGIYTLAVKNS-WGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEY 536
                          D+G YTL V  S    ++ T +  V         P+    +    
Sbjct: 67  IYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYP-----ELPKPSISSN-NS 120

Query: 537 YMVEKMET-------DTGKVLIKWIRTNDKRVTIDNVDYFTK----ITIRPLQRSDTAQY 585
             VE  +        +T      W   N++ + +      +     +T+  + R+DTA Y
Sbjct: 121 KPVEDKDAVAFTCEPETQDATYLWWV-NNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 179

Query: 586 TVTATNSQGKDQV-FIEVVVTDKPSAPEGPIQ-------WLLTLT---------DVTWEI 628
                N     +   + + V   P AP              L L+           +W +
Sbjct: 180 KCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239

Query: 629 SNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
           +   Q+    L                            I  +  +++  YT  A NS  
Sbjct: 240 NGTFQQSTQEL---------------------------FIPNITVNNSGSYTCQAHNSDT 272

Query: 689 KDQV--FIEVVVTDKPSAPEGPIQ 710
                    + V  +P  P     
Sbjct: 273 GLNRTTVTTITVYAEPPKPFITSN 296

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 91.3 bits (226), Expect = 2e-19
 Identities = 35/288 (12%), Positives = 93/288 (32%), Gaps = 33/288 (11%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           + + ++V   ++    + V      +  W+    ++  +  F + N    + + +     
Sbjct: 54  EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTE 112

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLI 551
             +G Y L +++          V++    L             +  +V   E+   + ++
Sbjct: 113 TQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP-EPIV 171

Query: 552 KWIRTNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPS 609
           +W+  + +  +  +      K   + L           A N  G++      + +   P 
Sbjct: 172 EWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQ 231

Query: 610 APEGPIQWL----LTLT----------DVTWEISNY-LQELHSSLMPISLESQYLMNDKR 654
                +       L +            +TWE+ N  L+E +   M     ++ ++    
Sbjct: 232 TTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF 291

Query: 655 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
             + +V            R+DT  YT +++    +      V + +K 
Sbjct: 292 AFVSSV-----------ARNDTGYYTCSSSKHPSQS---ALVTIVEKG 325

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 84.8 bits (209), Expect = 3e-17
 Identities = 43/452 (9%), Positives = 95/452 (21%), Gaps = 62/452 (13%)

Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVT 241
                + +       AG Y +  ++     ++   V + +                    
Sbjct: 100 RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR-PYFRKMENQDA 158

Query: 242 LDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV 301
           L           P         D    +     E    V   E + L        R  A 
Sbjct: 159 LVCIS----ESVPEPIVEWVLCD---SQGESCKEESPAVVKKEEKVLHELFGTDIRCCAR 211

Query: 302 NKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIV---- 357
           N+ G+    T   +I+              ++ +     + +          +       
Sbjct: 212 NELGREC--TRLFTIDLNQTPQTTLPQLFLKVGEP----LWIRCKAV---HVNHGFGLTW 262

Query: 358 ---GYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
                 +E+   +        +T        V  +   +   +   +             
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS-------- 314

Query: 415 APHIARAK-KVSPYINR-DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR 472
               A        +IN  +   D ++     F F +     P     W  +  +   + +
Sbjct: 315 --QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK 372

Query: 473 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV--------------LG 518
                 D    +  F + +   G Y    +N          + +                
Sbjct: 373 GL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQAS 428

Query: 519 CSLKWNPPEDDGGAPIE-YYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPL 577
           C     P               +K    T ++          R         + + +   
Sbjct: 429 CFSDGYPL-----PSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMS-- 481

Query: 578 QRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 609
           +          A NS G     I +       
Sbjct: 482 EAIKGFLVKCCAYNSLGTSCETILLNSPGPFP 513

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 73.6 bits (180), Expect = 9e-14
 Identities = 33/297 (11%), Positives = 72/297 (24%), Gaps = 41/297 (13%)

Query: 432 QLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDD------KSTKL 484
            L  + ++ G         +         W   +  +   + F++          +    
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292

Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMET 544
            V    R D+G YT +          +A VT++           +     E Y +++ E 
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQ---SALVTIVE------KGFINATNSSEDYEIDQYEE 343

Query: 545 DTGKVL--------IKWIRTNDK-RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK 595
               V           W  +          +D    I+     +    +Y   A N   +
Sbjct: 344 FCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQ 403

Query: 596 DQVFIEVVVTDKPSAPEGPIQWLLTLT---------DVTWEISNYLQELHSSLMPISLES 646
                 + +  KP             +           TW+  +      +  +   + +
Sbjct: 404 FTKMFTLNIRRKPQVLAEAS--ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWN 461

Query: 647 QYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
           +                +  T+   +          A NS G     I +       
Sbjct: 462 RKANRKVFGQWV-----SSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFP 513

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 31/237 (13%)

Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDT- 546
           DS  G S  Y +  ++             LGC+L+                V+   + T 
Sbjct: 21  DSSVGKSSSYPMVSESPED----------LGCALRPQSSGTV--YEAAAVEVDVSASITL 68

Query: 547 -------GKVLIKWIRTNDKRVTIDNVD----YFTKITIRPLQRSDTAQYTVTATNSQGK 595
                  G +   W+  +       + D        + I  +  +   +Y +   +    
Sbjct: 69  QVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN 128

Query: 596 DQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRV 655
             +   V + +                    E  + L  +  S+    +E     +    
Sbjct: 129 YTILFTVSIRNTLLYTLRRP------YFRKMENQDALVCISESVPEPIVEWVLCDSQGES 182

Query: 656 TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPSAPEGPIQI 711
             +      K   + L           A N  G++      + +   P      + +
Sbjct: 183 CKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFL 239

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 28/167 (16%), Positives = 48/167 (28%), Gaps = 13/167 (7%)

Query: 171 GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS--PPGG 228
                 + + LD    +      +   G Y   AEN + + +    + +  KP       
Sbjct: 364 RKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEAS 423

Query: 229 PLKVSNVHAEGV---TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEV 285
             + S   ++G    +  WK   D      E+      +    R    G+     T    
Sbjct: 424 ASQAS-CFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANR-KVFGQWVSSSTLNMS 481

Query: 286 EGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPE 332
           E       +  +  A N  G S     T  + +  PF      GT  
Sbjct: 482 E---AIKGFLVKCCAYNSLGTS---CETILLNSPGPFPFIQDGGTKH 522

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 82.5 bits (204), Expect = 3e-19
 Identities = 21/108 (19%), Positives = 30/108 (27%), Gaps = 8/108 (7%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
             P  P   + +S        L W  P +  G  +  Y +        R     +     
Sbjct: 6   SGPGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTI-DFGKDD 61

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
               V GL     Y FR+ A N+ G  E            P +  G  
Sbjct: 62  QHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT----PEDLSGPS 105

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 79.8 bits (197), Expect = 3e-18
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           PG+P T  I     +   L W PP++  G  ++GY ++               + D    
Sbjct: 8   PGRP-TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQ-HF 64

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            V  L +G  Y FR+ A N+ G GE  +   
Sbjct: 65  TVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 95

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 60  PLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV-GKTREPEMDVTGLT 118
            + +S    +   L+W+ PK+  G  L GY ++    +      +     +    VTGL 
Sbjct: 12  TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLH 70

Query: 119 PGHEYKFRVKALNKEGESEPLETFSSI 145
            G  Y FR+ A N+ G  E  E     
Sbjct: 71  KGTTYIFRLAAKNRAGLGEEFEKEIRT 97

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 14/97 (14%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
             L+W+PP++  G  +  Y ++    D  +        +D+  T+  +   T    R   
Sbjct: 23  ALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFR--- 78

Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVT--DKPSAPEG 613
                   + A N  G  + F + + T  D      G
Sbjct: 79  --------LAAKNRAGLGEEFEKEIRTPEDLSGPSSG 107

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 81.9 bits (202), Expect = 5e-19
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ-TEGDTPK 383
              P    +       V L W PPE      + GY++E ++     WE       G   +
Sbjct: 7   GLSPPRGLVAVRTPRGVLLHWDPPE-LVPKRLDGYVLEGRQGSQG-WEVLDPAVAGTETE 64

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
             V  LI+   YEFR++A       +PS+  
Sbjct: 65  LLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 71.9 bits (176), Expect = 1e-15
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 222 KPSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE-TEG 278
             S    P    V+     GV L W  P+      ++ YV++   + +  W        G
Sbjct: 3   SGSSGLSPPRGLVAVRTPRGVLLHWDPPELVPK-RLDGYVLEG-RQGSQGWEVLDPAVAG 60

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
             T L V GLI +  Y+FR+ A      S+P  T 
Sbjct: 61  TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 66.5 bits (162), Expect = 1e-13
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 54  GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT---REP 110
           GL P   L V+     G  L W+ P +   + L+GY++E     +  W  +       E 
Sbjct: 7   GLSPPRGL-VAVRTPRGVLLHWDPP-ELVPKRLDGYVLE-GRQGSQGWEVLDPAVAGTET 63

Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
           E+ V GL     Y+FR+ A      S+P  T
Sbjct: 64  ELLVPGLIKDVLYEFRLVAFAGSFVSDPSNT 94

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 81.9 bits (202), Expect = 7e-19
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE----KYVVDKM 263
                   +V+ L KP PP     V  V    + L W +   +  Q  +    ++ +++ 
Sbjct: 4   GSSGMEPHKVVPLSKPHPP----VVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEE 59

Query: 264 DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
           D     +       G  T   VEGL P   YKFR++  +  G+ E 
Sbjct: 60  DPKMHSYGVIYT--GYATRHVVEGLEPRTLYKFRLKVTSPSGEYEY 103

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 80.0 bits (197), Expect = 3e-18
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 4/99 (4%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEG----YLVEKYDPETGVWIPVGKTREPE 111
               P  V  +      L W+  + +  +  +     + +E+ DP+   +  +       
Sbjct: 17  SKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATR 76

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
             V GL P   YKFR+K  +  GE E     S    R+ 
Sbjct: 77  HVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 74.2 bits (182), Expect = 3e-16
 Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 11/114 (9%)

Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVG----YI 360
           G S            +      KP  P +       +EL W   ++            + 
Sbjct: 1   GSSGSSGME-----PHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFS 55

Query: 361 IEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           IE+++     +       G   +  V  L     Y+FR+   +  G  E S   
Sbjct: 56  IEEEDPKMHSYGVIY--TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVV 107

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 86.9 bits (214), Expect = 9e-19
 Identities = 36/289 (12%), Positives = 82/289 (28%), Gaps = 12/289 (4%)

Query: 141 TFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFY 200
           T S II ++    +         +   +    G  +++      + + +       A   
Sbjct: 19  TASCIIKQNCS--HLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLS 76

Query: 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV 260
                  + +   +VE+     P+ P     + N+    +   W+ P  +   P    + 
Sbjct: 77  CSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWE-PGPETHLPTSFTLK 135

Query: 261 DKMDEATGRWTPAGETEGPVTGLE------VEGLIPNHKYKFRVRAVNKQGK--SEPLT- 311
                   +       +      +       + L+        V+A N  G   S  L  
Sbjct: 136 SFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCL 195

Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW 371
               +    P        +PE        ++L+W P +          +  K ++    W
Sbjct: 196 DPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASW 255

Query: 372 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
                   +  + ++  L+    Y  ++  +    PG  SD +     R
Sbjct: 256 ALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 304

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 88.0 bits (218), Expect = 9e-19
 Identities = 50/296 (16%), Positives = 92/296 (31%), Gaps = 37/296 (12%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII---SKDRFKIVNDDKST 482
                 Q   I    G        VIG+P+PT  W  N   +       R  ++      
Sbjct: 122 LRFLS-QTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA-- 178

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
            L++   + GDSG+Y  + +N   T     A+V +L               P     +E 
Sbjct: 179 -LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQR-PSNVIAIEG 236

Query: 542 METD-----TG--KVLIKWIRTNDKRVTIDNVDYFTK----ITIRPLQRSDTAQYTVTAT 590
            +       +G       W+R  ++ + + +  Y       + I  +   D+  YT   T
Sbjct: 237 KDAVLECCVSGYPPPSFTWLR-GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVT 295

Query: 591 NSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSLMPI---SL 644
                     E+ V   P        +L   +++    S  ++    +    +P      
Sbjct: 296 YKNENISASAELTVLVPP-------WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK 348

Query: 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700
               ++      I        + I  + +SD   Y   A N  G  Q   +++V  
Sbjct: 349 NGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 54/325 (16%), Positives = 93/325 (28%), Gaps = 63/325 (19%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDITI-ISKDRFKIVNDDK 480
           + S +    + SD     G N   + +   +  +P  +W  + + + +  D  K    + 
Sbjct: 19  RRSLHF-VSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG 77

Query: 481 S---TKLKVFDSKRGDSGIYT-LAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIE 535
           S     +      + D G+Y   A     G+    TAKV V G     +  E        
Sbjct: 78  SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTES------- 130

Query: 536 YYMVEKMETDTGKVL----------IKWIR--------TNDKRVTIDNVDYFTKITIRPL 577
              +     DT  +           I W +          D RV +        + I  L
Sbjct: 131 ---ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG---ALQISRL 184

Query: 578 QRSDTAQYTVTATNSQG-KDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELH 636
           Q  D+  Y  +A N    +     EV +   P                    SN +    
Sbjct: 185 QPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLY--------FLQRPSNVIAIEG 236

Query: 637 SSLM---------PISLESQYLMNDKRVTIDNVDYFTK----ITIRPLQRSDTAQYTVTA 683
              +         P S    +L  ++ + + +  Y       + I  +   D+  YT   
Sbjct: 237 KDAVLECCVSGYPPPSF--TWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVV 294

Query: 684 TNSQGKDQVFIEVVVTDKPSAPEGP 708
           T          E+ V   P     P
Sbjct: 295 TYKNENISASAELTVLVPPWFLNHP 319

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 20/199 (10%)

Query: 418 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN 477
           ++            + S++    G +   +  V G P P+  WL  +  I  + +   + 
Sbjct: 213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL 272

Query: 478 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYY 537
              +  L + +    DSG YT  V         +A++TV        PP      P   Y
Sbjct: 273 GGSN--LLISNVTDDDSGTYTCVVTYKNENISASAELTV------LVPPWFLNH-PSNLY 323

Query: 538 MVEKMETD-----TG--KVLIKWIRTNDKRVTIDNVDYFTK---ITIRPLQRSDTAQYTV 587
             E M+ +     +G     + W++ N   V   +         + I  + +SD   Y  
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWMK-NGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQC 382

Query: 588 TATNSQGKDQVFIEVVVTD 606
            A N  G  Q   +++V  
Sbjct: 383 VAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 31/178 (17%), Positives = 52/178 (29%), Gaps = 27/178 (15%)

Query: 551 IKWIR-------TNDKRVTI--DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 601
           IKW +         D R     +       I      + D   Y   A+       +   
Sbjct: 54  IKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRT 113

Query: 602 VVVTDKPSAPEGPIQWLLTLTDVTWEISN--YLQ-ELHSSLMPI------SLESQYLMND 652
             V        GP+++L     +T  + +   L+ E+    MP         +   +  D
Sbjct: 114 AKVMV-----AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD 168

Query: 653 KRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG-KDQVFIEVVVTDKPSAPEGPI 709
            RV +        + I  LQ  D+  Y  +A N    +     EV +   P       
Sbjct: 169 SRVVVLPSG---ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLY 223

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 86.8 bits (214), Expect = 1e-18
 Identities = 33/249 (13%), Positives = 70/249 (28%), Gaps = 13/249 (5%)

Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLD 243
             +L +R  Q  D+G Y+       G+ +  V ++V   P  P             V  +
Sbjct: 59  GRRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQL-SCFRKSPLSNVVCE 114

Query: 244 WKVPDDDGGQPIE---KYVVDKMDEATGRWT--PAGETEGPVTGLEVEGLIPNHKYKFRV 298
           W  P        +        +   A          +     +         +  Y   +
Sbjct: 115 WG-PRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSM 173

Query: 299 RAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQ-NGGSPIV 357
              +  G     T T         + P    T      +  ++ + W  P   N     +
Sbjct: 174 CVASSVGSKFSKTQTFQGCGILQPDPPANI-TVTAVARNPRWLSVTWQDPHSWNSSFYRL 232

Query: 358 GYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 417
            + +  + + S  +      +       + D   G ++  ++ A  + G GE S+ +   
Sbjct: 233 RFELRYRAERSKTFTTW-MVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEA 291

Query: 418 IARAKKVSP 426
           +      S 
Sbjct: 292 MGTPWTESR 300

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 86.0 bits (212), Expect = 1e-18
 Identities = 41/283 (14%), Positives = 84/283 (29%), Gaps = 10/283 (3%)

Query: 141 TFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFY 200
           T   ++       +   ++    K ++          + +   ++     +A        
Sbjct: 23  TAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQ-YTIINRTASSVTFTDIASLNIQLTC 81

Query: 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV 260
            +       ++   + +I    P  P   L       + +  +W    +        + +
Sbjct: 82  NILTFGQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETH--LETNFTL 138

Query: 261 DKMDEATGRWTPAGETEGPVTGLEVE-GLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
            K + AT ++          T   V+   +     +  V A N  GK            K
Sbjct: 139 -KSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYK 197

Query: 320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE--KCAQT 377
              N P    +    +  +  ++L WT P       I+ Y I+ + K +  W       T
Sbjct: 198 VKPNPPHNL-SVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDT 255

Query: 378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
                   V DL    +Y FR+  + + G G  SD +      
Sbjct: 256 ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 298

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 23/190 (12%), Positives = 51/190 (26%), Gaps = 10/190 (5%)

Query: 233 SNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNH 292
           SN  A  V  +  +           +  +       ++T    T   VT  ++     N 
Sbjct: 20  SNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIAS--LNI 77

Query: 293 KYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNG 352
           +    +    +  ++       +I +  P   P KP        +   +   W    +  
Sbjct: 78  QLTCNILTFGQLEQNV---YGITIISGLP---PEKPKNLSCIVNEGKKMRCEWDGGRE-- 129

Query: 353 GSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD 412
                 + ++ +       +  A+ +  T        +     E  V A N  G      
Sbjct: 130 THLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDH 189

Query: 413 PTAPHIARAK 422
                + + K
Sbjct: 190 INFDPVYKVK 199

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 11/91 (12%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG----KTREPEMDVTG 116
           +  S        L W  P       L+ Y ++    +   W  +      +      V  
Sbjct: 208 VINSEELSSILKLTWTNPSIKSVIILK-YNIQYRTKDASTWSQIPPEDTASTRSSFTVQD 266

Query: 117 LTPGHEYKFRVKALNKEGE------SEPLET 141
           L P  EY FR++ + ++G+      SE    
Sbjct: 267 LKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 297

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 87.8 bits (217), Expect = 2e-18
 Identities = 33/288 (11%), Positives = 88/288 (30%), Gaps = 33/288 (11%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           + + ++V   ++    + V      +  W+    ++  +  F + N    + + +     
Sbjct: 54  EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTE 112

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLI 551
             +G Y L +++          V++   +L +               +  +     + ++
Sbjct: 113 TQAGEYLLFIQSEATNYTILFTVSIRN-TLLYTLRRPYFRKMENQDALVCISESVPEPIV 171

Query: 552 KWIRTNDKRVTIDNVDYFTKITIRPL--QRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 609
           +W+   D +      +    +                  A N  G++   +  +  ++  
Sbjct: 172 EWVL-CDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTP 230

Query: 610 APEGPIQWL-----LTLT----------DVTWEISNYLQELHSSLMPISLESQYLMNDKR 654
               P  +L     L +            +TWE+ N  + L         E  Y      
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELEN--KALE--------EGNYFEMSTY 280

Query: 655 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
            T   +       +  + R+DT  YT +++    +      V + +K 
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKG 325

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 64.7 bits (157), Expect = 4e-11
 Identities = 50/434 (11%), Positives = 117/434 (26%), Gaps = 56/434 (12%)

Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHA-EGVTLDWKVPDDD 250
           +    +  Y + +E+        +   +  + S          V     +TL   V    
Sbjct: 22  SSVGKSSSYPMVSESPED-----LGCALRPQSSGTVYEAAAVEVDVSASITLQVLVD--- 73

Query: 251 GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPL 310
                   +      +             V  + +  +      ++ +   ++      +
Sbjct: 74  -APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT-I 131

Query: 311 TTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI 370
             T SI          +P   ++++ D   V ++ + PE     PIV +++   +  S  
Sbjct: 132 LFTVSIRNT-LLYTLRRPYFRKMENQDA-LVCISESVPE-----PIVEWVLCDSQGESCK 184

Query: 371 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR 430
            E  A  + +        L E    + R  A N+ G                 ++    +
Sbjct: 185 EESPAVVKKEE-----KVLHELFGTDIRCCARNELG-------RECTRLFTIDLNQTP-Q 231

Query: 431 DQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDD------KSTK 483
             L  + ++ G         +         W   +  +   + F++          +   
Sbjct: 232 TTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF 291

Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
             V    R D+G YT +          +A VT++           +     E Y +++ E
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVE------KGFINATNSSEDYEIDQYE 342

Query: 544 T------DTGKVLIKWIRTNDKRVTIDNVDYF---TKITIRPLQRSDTAQYTVTATNSQG 594
                        I+   T  ++              I+     +    +Y   A N   
Sbjct: 343 EFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402

Query: 595 KDQVFIEVVVTDKP 608
           +      + +    
Sbjct: 403 QFTKMFTLNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 63.5 bits (154), Expect = 1e-10
 Identities = 27/282 (9%), Positives = 68/282 (24%), Gaps = 57/282 (20%)

Query: 450 VIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507
               P P  EW+  D       ++   +V  ++    ++               +N  G 
Sbjct: 163 SESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL------FGTDIRCCARNELGR 216

Query: 508 DKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMET-------DTG--KVLIKWIRTND 558
           +        L      N         +    ++  E                + W    +
Sbjct: 217 ECTRLFTIDL------NQTPQ---TTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-EN 266

Query: 559 KRVTIDNVDYFT------------KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
           K +   N    +               +  + R+DT  YT +++    +      V + +
Sbjct: 267 KALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVE 323

Query: 607 KPSAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSLMPI---SLESQYLMNDKRVTIDNV 660
           K       I    +  D   +            +        +   +    +++   +  
Sbjct: 324 KG-----FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNG- 377

Query: 661 DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
                I+     +    +Y   A N   +      + +    
Sbjct: 378 ---YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDS 489
            L  + V  GS   F+ ++ G P+P   W  +   I +      +I   D   KL +   
Sbjct: 11  PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAV 70

Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
            + +SG Y+L   N  G    TA++ V     +  PP           +         +V
Sbjct: 71  TKANSGRYSLKATNGSGQATSTAELLVKA---ETAPPN------FVQRLQSMTVRQGSQV 121

Query: 550 L------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS 592
                        +K+ R      +     I        + I      D+  Y+V ATNS
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181

Query: 593 QGKDQVFIEVVV 604
            G+     E++V
Sbjct: 182 VGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 72.4 bits (178), Expect = 9e-15
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 420 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 479
           +A+   P   + +L  + VR GS     + V G P P  ++  +   I S   F+I  + 
Sbjct: 98  KAETAPPNFVQ-RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG 156

Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
               L + ++   DSG Y++   NS G    TA++ V
Sbjct: 157 DLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 43/174 (24%)

Query: 551 IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
           + W R       +    V I   D   K+TI  + ++++ +Y++ ATN  G+     E++
Sbjct: 37  VSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELL 96

Query: 604 VTDKPSAPEGPIQWLLTLT-------------------DVTWEISNYLQELHSSLMPISL 644
           V  + + P   +Q L ++T                    V +                  
Sbjct: 97  VKAETAPPN-FVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFY----------------R 139

Query: 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
           +   + +     I        + I      D+  Y+V ATNS G+     E++V
Sbjct: 140 DGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
               V I   D   K+TI  + ++++ +Y++ ATN  G+     E++V  + + P 
Sbjct: 50  TLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPN 105

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
            ++   D   KL +    +A++G Y++ A N +G+ +   E++V  + +PP
Sbjct: 54  VQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 86.2 bits (213), Expect = 2e-18
 Identities = 50/340 (14%), Positives = 97/340 (28%), Gaps = 66/340 (19%)

Query: 418 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIV 476
           + RA +V P     Q   +   +G   E       G P+    W+ +   ++  +R  + 
Sbjct: 1   MGRAAEV-PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG 59

Query: 477 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-TDKGTAKVTVLGCSLKWNPPEDDGGAPIE 535
                 +L+V ++   DSG Y+   + +       + +VT    S      ED+      
Sbjct: 60  P----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGV 115

Query: 536 YYMV------EKMETDTGKVL------------------IKWIRTNDKRVTIDNVDYFTK 571
                     E+M+     V                   I W++ N +    ++     K
Sbjct: 116 DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIK 174

Query: 572 I-------TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTD- 623
           +        +  +  SD   YT    N  G  +    + V ++   P  PI       + 
Sbjct: 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS--PHRPILQAGLPANQ 232

Query: 624 ---------------------VTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY 662
                                + W     +             +         T   ++ 
Sbjct: 233 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE- 291

Query: 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
              +++  +   D  +YT  A NS G       +VV    
Sbjct: 292 --VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 75.8 bits (186), Expect = 6e-15
 Identities = 47/247 (19%), Positives = 72/247 (29%), Gaps = 32/247 (12%)

Query: 392 GNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP----YINRDQLSDIKVRAGSNFEFD 447
                F V   +    G+  D                     R     + V A +   F 
Sbjct: 85  RVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFR 144

Query: 448 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK-LKVFDSKRGDSGIYTLAVKNSWG 506
               G P P+  WL N      + R   +        L +      D G YT  V+N +G
Sbjct: 145 CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG 204

Query: 507 TDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD-----TGKVL--IKWIR---T 556
           + + T  + VL  S     P    G P     V   + +            I+W++    
Sbjct: 205 SIRQTYTLDVLERSPH--RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEV 262

Query: 557 NDKRVTIDNVDYFTKI---------------TIRPLQRSDTAQYTVTATNSQGKDQVFIE 601
           N  +V  D   Y T +               ++  +   D  +YT  A NS G       
Sbjct: 263 NGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW 322

Query: 602 VVVTDKP 608
           +VV    
Sbjct: 323 LVVLPAE 329

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 79.3 bits (196), Expect = 4e-18
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P +   P++        ++ W  P  NG + +  Y +E         + C    G     
Sbjct: 8   PDQCKPPQVTCRSATCAQVNWEVPLSNG-TDVTEYRLEWGGVEGS-MQIC--YCGPGLSY 63

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
           ++  L     Y  RV A++  G G  S+  A
Sbjct: 64  EIKGLSPATTYYCRVQALSVVGAGPFSEVVA 94

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 78.9 bits (195), Expect = 6e-18
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 223 PSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
            S P      +V+   A    ++W+VP  +G   + +Y + +     G         GP 
Sbjct: 5   SSGPDQCKPPQVTCRSATCAQVNWEVPLSNGT-DVTEYRL-EWGGVEGSMQIC--YCGPG 60

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEP-----LTTTAS 315
              E++GL P   Y  RV+A++  G           T  S
Sbjct: 61  LSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPS 100

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 72.3 bits (178), Expect = 9e-16
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 59  GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLT 118
            P +V+        + W  P    G  +  Y +E +    G             ++ GL+
Sbjct: 12  KPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLE-WGGVEGSMQICYCGPGLSYEIKGLS 69

Query: 119 PGHEYKFRVKALNKEGESEP 138
           P   Y  RV+AL+  G    
Sbjct: 70  PATTYYCRVQALSVVGAGPF 89

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 14/92 (15%), Positives = 22/92 (23%), Gaps = 14/92 (15%)

Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
            + W  P    G  +  Y +E    +    +            I  +   T    R    
Sbjct: 25  QVNWEVP-LSNGTDVTEYRLEWGGVEGSMQIC--YCGPGLSYEIKGLSPATTYYCR---- 77

Query: 580 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
                  V A +  G       V     PS+ 
Sbjct: 78  -------VQALSVVGAGPFSEVVACVTPPSSG 102

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 85.7 bits (212), Expect = 5e-18
 Identities = 51/300 (17%), Positives = 95/300 (31%), Gaps = 37/300 (12%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
                     S + VR G                +  W+ N+      +R  +  +  + 
Sbjct: 100 YLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN- 158

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
            L +   ++ D G YT  V N+    K     T L   L+ +    +    IE    E +
Sbjct: 159 -LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPL--ILRNDGVMGEYEPKIEVQFPETV 215

Query: 543 ETDTGKVL-------------IKWIRTNDKRVTIDNVDYFTK--ITIRPLQRSDTAQYTV 587
             + G  +             I W R + K +      + +   + I   Q+ D   Y  
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYEC 275

Query: 588 TATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSLMPI-- 642
            A NS+GK+    ++    +P+       W+  + D+   +   +    + +    P   
Sbjct: 276 VAENSRGKNVAKGQLTFYAQPN-------WVQIINDIHVAMEESVFWECKANGRPKPTYR 328

Query: 643 -SLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
                  L+   R+ I+       + I  +  SD   Y   A N  G      E+ V  +
Sbjct: 329 WLKNGDPLLTRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 38/231 (16%)

Query: 397 FRVLAVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRAGSNFEFDINVIG 452
           +  +  N     +   P  P I R   V     P I       +    G+  + +   +G
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 231

Query: 453 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512
            P+PT  W   D   I++   +    +    L++ + ++ D+G Y    +NS G +    
Sbjct: 232 NPVPTILWRRADGKPIARKA-RRHKSNGI--LEIPNFQQEDAGSYECVAENSRGKNVAKG 288

Query: 513 KVTVLGCSLKW-NPPEDDGGAPIEYYMVEKMETDTG----------KVLIKWIR-----T 556
           ++T       W     D          +     ++           K   +W++      
Sbjct: 289 QLTFYA-QPNWVQIIND----------IHVAMEESVFWECKANGRPKPTYRWLKNGDPLL 337

Query: 557 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 607
              R+ I+       + I  +  SD   Y   A N  G      E+ V  +
Sbjct: 338 TRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 55/346 (15%), Positives = 104/346 (30%), Gaps = 87/346 (25%)

Query: 406 GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRA---GSNFEFDINVIGEPIPTKEWLC 462
           GPG                 P     + S +           +    V G P P   W  
Sbjct: 1   GPGSG---------------PVF-VQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL 44

Query: 463 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLGCSL 521
           N   +     F+    D S  +   +  + D+G Y     NS+GT     AK+       
Sbjct: 45  NGTDVDIGMDFRYSVVDGSLLINNPNKTQ-DAGTYQCIATNSFGTIVSREAKLQFAY--- 100

Query: 522 KWNPPEDDGGAPIEYYMVEKMET---------DTGKVLIKWIRTNDKRVTIDNVDYFTKI 572
                E+          V + +           +G++   WI  N+     DN  + ++ 
Sbjct: 101 ----LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIF-NEYPSYQDNRRFVSQE 155

Query: 573 T----IRPLQRSDTAQYTVTATNSQGKDQV---FIEVVVTDKPSAPEGPIQWLLTLT--- 622
           T    I  +++SD   YT   TN+    +V      +++ +     E   +  +      
Sbjct: 156 TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215

Query: 623 --------------------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY 662
                                + W          +   PI+ +++   ++  + I N   
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILW--------RRADGKPIARKARRHKSNGILEIPNF-- 265

Query: 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
                    Q+ D   Y   A NS+GK+    ++    +P+  +  
Sbjct: 266 ---------QQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQII 302

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 171 GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
           G  + RK +    N  L +   Q+ DAG Y   AEN  GK+  + ++    +P+
Sbjct: 244 GKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN 297

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 84.5 bits (209), Expect = 1e-17
 Identities = 42/304 (13%), Positives = 83/304 (27%), Gaps = 51/304 (16%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
                + ++   +K+  G    F  +     P  +  WL N+         +      + 
Sbjct: 99  FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 158

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
            L +  ++  D G Y+    +       +        SL            I+       
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYA-PSIKAKFPADT 217

Query: 543 ETDTGKVL-------------IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTA 589
              TG+++             IKW +  D   T   +     + I+ +   D   Y   A
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKWRK-LDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEA 276

Query: 590 TNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTD---------------VTWEISNYLQE 634
            N +G+D     +++  +P   +        +                 V W        
Sbjct: 277 ENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR------ 330

Query: 635 LHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI 694
                     + Q L +  R+ +       ++    L   D+  Y   A N  G      
Sbjct: 331 ----------DGQPLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHGTVYASA 376

Query: 695 EVVV 698
           E+ V
Sbjct: 377 ELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 43/202 (21%)

Query: 422 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 481
           ++ +P I     +D     G     +    G P+P  +W   D +  S    K ++ +  
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS----KWLSSEPL 258

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKW-NPPEDDGGAPIEYYMVE 540
             L + +    D G Y    +N  G D    ++ +      W +   D            
Sbjct: 259 --LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-QPDWLDVITD------------ 303

Query: 541 KMETDTGKVL-------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDT 582
             E D G  L             ++W+R      +  R+ +       ++    L   D+
Sbjct: 304 -TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG----GELRFSKLVLEDS 358

Query: 583 AQYTVTATNSQGKDQVFIEVVV 604
             Y   A N  G      E+ V
Sbjct: 359 GMYQCVAENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 43/324 (13%), Positives = 81/324 (25%), Gaps = 68/324 (20%)

Query: 426 PYINRDQLSDIKVRAGSNFE---FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
           P    +Q +      GS  E           P  T  W  N   +      +        
Sbjct: 5   PVF-EEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
            +     K  D+G Y     N+ GT     A +            ++      +   + +
Sbjct: 64  -VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGF-------LQEFSAEERDPVKITE 115

Query: 542 MET---------DTGKVLIKWIRTNDKRVTIDNVDYFTKIT-----IRPLQRSDTAQYTV 587
                           +  +W+          +   F   T     I   + SD   Y+ 
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSC 175

Query: 588 TATNSQGKDQ-----VFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLM-- 640
            AT+            F ++ +  + +    P        D               +   
Sbjct: 176 FATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY-------ALTGQMVTLE 228

Query: 641 --------PI--------SLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 684
                   P         S  S++L ++  + I NV              D   Y   A 
Sbjct: 229 CFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV-----------DFEDEGTYECEAE 277

Query: 685 NSQGKDQVFIEVVVTDKPSAPEGP 708
           N +G+D     +++  +P   +  
Sbjct: 278 NIKGRDTYQGRIIIHAQPDWLDVI 301

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 60.3 bits (146), Expect = 9e-10
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
              P    D ++D +   GS+  +     G+P P   WL +   + S++R ++   +   
Sbjct: 292 HAQPDW-LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE--- 347

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
            L+       DSG+Y    +N  GT   +A++TV  
Sbjct: 348 -LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK 364
           G S     +  +E +     PG              + + W  P    G  I  Y +   
Sbjct: 1   GSSGS---SGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYM 56

Query: 365 EKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           EK +   +     +  +    +  L +  +Y FRV+A NK GPG  +   
Sbjct: 57  EKGTDKEQD---VDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 103

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 209 GKDSVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
              S  VE       P P    L+        +T+ W+ P    G  I+ Y +  M++ T
Sbjct: 3   SGSSGRVETQPEVQLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGT 60

Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
            +     + +       + GL    +Y FRV A NK G    
Sbjct: 61  DKEQ---DVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVS 99

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 2/78 (2%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
           L          T+ W  P    GE    Y +   +  T     V         + GL   
Sbjct: 24  LRAYAASPTSITVTWETPVSGNGEIQ-NYKLYYMEKGTDKEQDV-DVSSHSYTINGLKKY 81

Query: 121 HEYKFRVKALNKEGESEP 138
            EY FRV A NK G    
Sbjct: 82  TEYSFRVVAYNKHGPGVS 99

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 4/116 (3%)

Query: 300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGY 359
           +  + G   P  +   I  +   + PG P      +  T  V L W PP    G  I+ Y
Sbjct: 5   SSGRIGDGSP--SHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAY 61

Query: 360 IIE-KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            I  +    +              +     L   + Y FR+ A  + G GE ++  
Sbjct: 62  QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 5/113 (4%)

Query: 201 TVTAENINGKDSVEVEVIVL----DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE 256
           +  +    G  S     I+     D P PP G +    V    V L W+ P    G  + 
Sbjct: 2   SSGSSGRIGDGSPSHPPILERTLDDVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNGIILA 60

Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
             +  +++  T                   GL P   Y FR+ A  ++G  E 
Sbjct: 61  YQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEA 113

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR--EPEMDVTGLT 118
           +    +      L W  P    G  L   +  + +  T     V        +   TGL 
Sbjct: 34  ILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLK 93

Query: 119 PGHEYKFRVKALNKEGESEPLETFSSI 145
           P   Y FR+ A  ++G  E  E     
Sbjct: 94  PESVYLFRITAQTRKGWGEAAEALVVT 120

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 11/93 (11%)

Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
            L W PP    G  + Y +  ++ T T               +        + T   L+ 
Sbjct: 45  RLIWQPPAAPNGIILAYQITHRLNTTTA----NTATVEVLAPSA------RQYTATGLKP 94

Query: 580 SDTAQYTVTATNSQGK-DQVFIEVVVTDKPSAP 611
                + +TA   +G  +     VV T+K S P
Sbjct: 95  ESVYLFRITAQTRKGWGEAAEALVVTTEKRSGP 127

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 80.4 bits (198), Expect = 2e-17
 Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 10/201 (4%)

Query: 225 PPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           PP  P  L       + +  +W    +        + + K + AT ++          T 
Sbjct: 7   PPEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTL-KSEWATHKFADCKAKRDTPTS 63

Query: 283 LEVE-GLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
             V+   +     +  V A N  GK            K   N P    +    +  +  +
Sbjct: 64  CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNL-SVINSEELSSIL 122

Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE--KCAQTEGDTPKGKVLDLIEGNQYEFRV 399
           +L WT P       I+ Y I+ + K +  W       T        V DL    +Y FR+
Sbjct: 123 KLTWTNPSI-KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI 181

Query: 400 LAVNKGGPGEPSDPTAPHIAR 420
             + + G G  SD +      
Sbjct: 182 RCMKEDGKGYWSDWSEEASGI 202

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 56.9 bits (137), Expect = 3e-09
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 13/125 (10%)

Query: 201 TVTAENINGK---DSVEVEVIVLDKPSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIE 256
            V AEN  GK   D +  + +   KP+PP    +  S   +  + L W  P       + 
Sbjct: 79  WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL- 137

Query: 257 KYVVDKMDEATGRWT--PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK------SE 308
           KY +    +    W+  P  +T    +   V+ L P  +Y FR+R + + GK      SE
Sbjct: 138 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 197

Query: 309 PLTTT 313
             +  
Sbjct: 198 EASGI 202

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG----KTREPEMDVTG 116
           +  S        L W  P       L+ Y ++    +   W  +      +      V  
Sbjct: 112 VINSEELSSILKLTWTNPSIKSVIILK-YNIQYRTKDASTWSQIPPEDTASTRSSFTVQD 170

Query: 117 LTPGHEYKFRVKALNKEGESE 137
           L P  EY FR++ + ++G+  
Sbjct: 171 LKPFTEYVFRIRCMKEDGKGY 191

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 15/120 (12%), Positives = 29/120 (24%), Gaps = 12/120 (10%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P KP        +   +   W    +        + ++ +       +  A+ +  T   
Sbjct: 8   PEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTSCT 65

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSD----------PTAPHIARAKKVSPYINRDQLS 434
                +     E  V A N  G                P  PH           +  +L+
Sbjct: 66  VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLT 125

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 76.1 bits (187), Expect = 1e-16
 Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 17/130 (13%)

Query: 211 DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV---------- 260
            S    +  L  P+PP    ++     + +T+ W     D    I  Y +          
Sbjct: 4   GSSGEGLDYLTAPNPPSIREELCTASHDTITVHWI---SDDEFSISSYELQYTIFTGQAN 60

Query: 261 -DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
              +  +   W      +       V GL    +Y F V+A+N+ G      T     ++
Sbjct: 61  FISLYNSVDSWMIVPNIKQ--NHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQ 118

Query: 320 NPFNQPGKPG 329
            PF      G
Sbjct: 119 -PFKSGPSSG 127

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 75.3 bits (185), Expect = 2e-16
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 13/126 (10%)

Query: 311 TTTASIEAKNPFNQPGKP-GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP 369
           ++ +S E  +    P  P    E+     D + + W          I  Y ++       
Sbjct: 2   SSGSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQ 58

Query: 370 IWEKCAQTEGD---------TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
                     D              V  L  G +Y F V A+N+ G            ++
Sbjct: 59  ANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQ 118

Query: 421 AKKVSP 426
             K  P
Sbjct: 119 PFKSGP 124

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 74.2 bits (182), Expect = 4e-16
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 14/93 (15%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP-----------ETGVWIPVG 105
           P    E+     D  T+ W     D    +  Y ++                   W+ V 
Sbjct: 19  PSIREELCTASHDTITVHW---ISDDEFSISSYELQYTIFTGQANFISLYNSVDSWMIVP 75

Query: 106 KTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
             ++    V GL  G  Y F VKA+N+ G    
Sbjct: 76  NIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNS 108

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 79.2 bits (195), Expect = 1e-16
 Identities = 42/228 (18%), Positives = 75/228 (32%), Gaps = 33/228 (14%)

Query: 411 SDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK 470
           ++  AP+    +K+             V A +  +F     G P+PT  WL N      +
Sbjct: 11  NNKRAPYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 63

Query: 471 DRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDD 529
            R       ++   L +      D G YT  V+N +G+   T  + V+  S   + P   
Sbjct: 64  HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR--HRPILQ 121

Query: 530 GGAPIEYYMVEKMETD-----TG--KVLIKWIRTNDKRVTIDNVDYFTKI---------- 572
            G P     V   + +         +  I+WI+  +K  +    D    +          
Sbjct: 122 AGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINS 181

Query: 573 ------TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
                  +  +  +D  +Y    +N  G+      + V  K  AP   
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 62.6 bits (152), Expect = 4e-11
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 37/187 (19%)

Query: 551 IKWIRTNDKRVTIDNVDYFTKI-------TIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
           ++W++ N K    ++     K+        +  +  SD   YT    N  G       + 
Sbjct: 51  MRWLK-NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109

Query: 604 VTDKPSAPEGPIQWLLTLTD----------------------VTWEISNYLQELHSSLMP 641
           V ++      PI       +                      + W      ++  S   P
Sbjct: 110 VVERSRHR--PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV--EKNGSKYGP 165

Query: 642 ISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
             L    ++    +   N +    + +  +  +D  +Y    +N  G+      + V  K
Sbjct: 166 DGLPYLKVLKHSGINSSNAE---VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK 222

Query: 702 PSAPEGP 708
             AP   
Sbjct: 223 QQAPGRE 229

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 13/50 (26%), Positives = 18/50 (36%)

Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
           +      L +     ADAG Y     N  G+ +    + VL K   PG  
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           PG     +        + + W PP    G P+ GY +   E  +   +     E D    
Sbjct: 8   PGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQ---NIEVDGLSY 63

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           K+  L +  +Y  R LA N+ GPG  +D  
Sbjct: 64  KLEGLKKFTEYSLRFLAYNRYGPGVSTDDI 93

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 61.1 bits (149), Expect = 8e-12
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           P P    L+  +     + + W+ P    G P++ Y +   + +TG+       E     
Sbjct: 8   PGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQ---NIEVDGLS 62

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEP 309
            ++EGL    +Y  R  A N+ G    
Sbjct: 63  YKLEGLKKFTEYSLRFLAYNRYGPGVS 89

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 56  DPEGP---LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEM 112
              GP   L+  +       + W  P    G P++GY +   +  TG    + +      
Sbjct: 6   SGPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNI-EVDGLSY 63

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEP 138
            + GL    EY  R  A N+ G    
Sbjct: 64  KLEGLKKFTEYSLRFLAYNRYGPGVS 89

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 76.5 bits (188), Expect = 1e-15
 Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 30/233 (12%)

Query: 407 PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT 466
           P    D  AP+  R +++           + V A +   F     G P P+  WL N   
Sbjct: 3   PDTGVDTGAPYWTRPERMDK-------KLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 55

Query: 467 IISKDRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCS----- 520
              + R   I    +   L +      D G YT  V+N +G+ + T  + VL  S     
Sbjct: 56  FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 115

Query: 521 LKWNPPED----DG----------GAP---IEYYMVEKMETDTGKVLIKWIRTNDKRVTI 563
           L+   P +     G                I++    ++             T  K    
Sbjct: 116 LQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS 175

Query: 564 DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
           ++V+   ++ +  +   D  +Y   ATN  G  +    + V    +A E  ++
Sbjct: 176 ESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVE 228

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 36/189 (19%)

Query: 551 IKWIRTNDKRVTIDNVDYFTKI-------TIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
           I W++ N +    ++     K+        +  +  SD   YT    N  G  +    + 
Sbjct: 47  ISWLK-NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105

Query: 604 VTDKPSAPEGPIQWLLTLTDVT----------------------WEISNYLQELHSSLMP 641
           V ++   P  PI       + T                      W          +    
Sbjct: 106 VLERS--PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW----LKHVEVNGSKV 159

Query: 642 ISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
               + Y+   K    ++V+   ++ +  +   D  +Y   ATN  G  +    + V   
Sbjct: 160 GPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP 219

Query: 702 PSAPEGPIQ 710
            +A E  ++
Sbjct: 220 RAAEEELVE 228

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 75.7 bits (186), Expect = 1e-15
 Identities = 29/188 (15%), Positives = 52/188 (27%), Gaps = 31/188 (16%)

Query: 452 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511
                   W  N   I   DR K     +   L++ +    D G Y + + +     + T
Sbjct: 29  YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 88

Query: 512 AKVTVLGCS--------LKWNPPEDDGGAPIEYYMVEKMETDTGKVL------------- 550
             ++             LK     +   A +   + + +    GK L             
Sbjct: 89  VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 148

Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W      +   D              TI  +  +D+ +Y +   N  G +     V V
Sbjct: 149 VSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208

Query: 605 TDKPSAPE 612
                 PE
Sbjct: 209 F----IPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 400 LAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 459
           L+                 A A+K    +       + ++ G       NV G+P P   
Sbjct: 91  LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 150

Query: 460 WLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
           WL N+  +   D   +  +  ++    +      DSG Y L VKN +G++     V+V 
Sbjct: 151 WLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
            ++  I   +   + V  G +  F  +  GEP+PT  WL     + +  R ++      +
Sbjct: 12  TLAARILT-KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
             ++   +  D G Y++ V+NS G  +    +T+
Sbjct: 71  TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W+R     +   R  +    Y +   I  +Q SD   Y+V   NS+GK +    + +
Sbjct: 46  VTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
           L    R  +    Y +   I  +Q SD   Y+V   NS+GK +    + +
Sbjct: 55  LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 31/214 (14%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS- 481
           +  P   R    D    +G    F     G+P P   W      + ++    I  DD S 
Sbjct: 4   ETPPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62

Query: 482 TKLKVFDSKRG-DSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAP-IEYYMV 539
           + L++   +   D  IY     N+ G    + ++TVL         +   G P I+    
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLR------EDQIPRGFPTIDMGPQ 116

Query: 540 EKMETDTGKVL------------IKWIR--------TNDKRVTIDNVDYFTKITIRPLQR 579
            K+   T                I W +         N+ R+     +    + I   + 
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE 176

Query: 580 SDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPE 612
           SD  +Y   ATNS G        + V        
Sbjct: 177 SDQGKYECVATNSAGTRYSAPANLYVRGTKHHHH 210

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 31/186 (16%), Positives = 54/186 (29%), Gaps = 43/186 (23%)

Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNSQGKDQVFIEVV 603
           I W      +      V   +    + + I+PL+   D A Y   A+N+ G+  V   + 
Sbjct: 38  IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97

Query: 604 VTDKPSAPEGPIQWLLTLTD----------------------VTWEISNYLQELHSSLMP 641
           V  +   P G     +                          +TW             +P
Sbjct: 98  VLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF---------LP 148

Query: 642 ISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTD 700
           +   +    N+ R+     +    + I   + SD  +Y   ATNS G        + V  
Sbjct: 149 VDTSN----NNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRG 204

Query: 701 KPSAPE 706
                 
Sbjct: 205 TKHHHH 210

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 27/86 (31%), Positives = 42/86 (48%)

Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
           L D  V + S  +F +   GEP PT  W  +   I    ++K+  D     L++  +   
Sbjct: 13  LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72

Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLG 518
           DSG+YT  VKNS G+   + K+T+  
Sbjct: 73  DSGLYTCTVKNSAGSVSSSCKLTIKA 98

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
           +   P G  L  ++V  + + + W+ P       + +Y V       G        +G  
Sbjct: 1   NIDRPKG--LAFTDVDVDSIKIAWESPQG----QVSRYRVTYSSPEDGIHELFPAPDGEE 54

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
              E++GL P  +Y   V A++   +S+PL  T S
Sbjct: 55  DTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQS 89

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVGKTREPEM 112
           +D    L  +++  D   + W  P+      +  Y V    PE G+    P     E   
Sbjct: 2   IDRPKGLAFTDVDVDSIKIAWESPQG----QVSRYRVTYSSPEDGIHELFPAPDGEEDTA 57

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLET 141
           ++ GL PG EY   V AL+ + ES+PL  
Sbjct: 58  ELQGLRPGSEYTVSVVALHDDMESQPLIG 86

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P      D D D +++AW  P+      +  Y +        I E     +G+    ++ 
Sbjct: 5   PKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQ 60

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            L  G++Y   V+A++     +P   T 
Sbjct: 61  GLRPGSEYTVSVVALHDDMESQPLIGTQ 88

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 71.0 bits (174), Expect = 3e-15
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 5/103 (4%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
             P PP   L ++ V    V L W+            Y+V     +        E +   
Sbjct: 6   SGPLPPPRALTLAAVTPRTVHLTWQPSAG-----ATHYLVRCSPASPKGEEEEREVQVGR 60

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFN 323
             + ++GL P   Y+  V+++     SE     A      P +
Sbjct: 61  PEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGPSS 103

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG--KTREPEM 112
           L P   L ++ +      L W             YLV                +   PE+
Sbjct: 9   LPPPRALTLAAVTPRTVHLTWQPSAG-----ATHYLVRCSPASPKGEEEEREVQVGRPEV 63

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLET 141
            + GL PG +Y+  V++L     SE    
Sbjct: 64  LLDGLEPGRDYEVSVQSLRGPEGSEARGI 92

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 5/88 (5%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P    +       V L W P      +    Y++          E+  + +   P+  + 
Sbjct: 12  PRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEVLLD 66

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            L  G  YE  V ++      E     A
Sbjct: 67  GLEPGRDYEVSVQSLRGPEGSEARGIRA 94

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
           +L    PP   +KV+N+      + W+ P      PIE  +V    +         +   
Sbjct: 1   MLQ---PPFN-IKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTS 52

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLT---TTASIEAKN 320
            +T L +  L PN  Y+ R+ A N Q  S P++   TT S+E  +
Sbjct: 53  SITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTTFTTGSLEHHH 97

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG--KTREPEM 112
           L P   ++V+NI      + W  P      P+EG LV                 +    +
Sbjct: 2   LQPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSL 57

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLET 141
            +T L P   Y+ R+ A N +  S P+ T
Sbjct: 58  TLTNLEPNTTYEIRIVARNGQQYSPPVST 86

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P   ++ +       + W PP      PI G ++    K  P  E             + 
Sbjct: 5   PFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLTLT 60

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           +L     YE R++A N      P   T
Sbjct: 61  NLEPNTTYEIRIVARNGQQYSPPVSTT 87

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 77.6 bits (190), Expect = 4e-15
 Identities = 61/424 (14%), Positives = 117/424 (27%), Gaps = 56/424 (13%)

Query: 36  PKDDGGEPLEGY-LVEKDRGLDPEGP--LEVS-NIHKDGCTLKWNKPKDDGGEPLE-GYL 90
              D G     + L E++  L P+ P  L++S +       LKWN             + 
Sbjct: 63  SLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWE 122

Query: 91  VEKYDPETGVWIPVGKTREPEMDVTGLT----------PGHEYKFRVKALNKEGESE--- 137
           ++    E+   + +   +        L               +   ++            
Sbjct: 123 IKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLE 182

Query: 138 ------PLETFSSIIARDPYSKYTSV-----SSLDSHKRSNQPCGSGMVRKV----QHLD 182
                 P++  S I                 S +     S +   S ++        HLD
Sbjct: 183 EWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLD 242

Query: 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTL 242
               + +++   + +             +     +     P  P   L       + +  
Sbjct: 243 GEN-VAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQ-LNCETHDLKEIIC 300

Query: 243 DWKVPDDDG--GQPIEKYVVDKMDEATGRWTPAGETEGPVTG---LEVEGLIPNHKYKFR 297
            W         G     Y + +     G++      E P      L  + L     Y F 
Sbjct: 301 SWNPGRVTALVGPRATSYTLVESFS--GKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFT 358

Query: 298 VRAVNKQGKSE--PLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSP 355
           + A N  G+S+   L              P  P + ++KD ++  V+L+W  P  N    
Sbjct: 359 LNAHNPLGRSQSTILVNITEKV------YPHTPTSFKVKDINSTAVKLSWHLPG-NFAKI 411

Query: 356 IVGYIIEKKEKYSPIWEKCAQTEGDTPK---GKVLDLIEGNQYEFRVLAV--NKGGPGEP 410
                IE K+  S   ++    +G         +  L     Y FR+           + 
Sbjct: 412 NFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKW 471

Query: 411 SDPT 414
           S+  
Sbjct: 472 SNKK 475

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 75.6 bits (185), Expect = 1e-14
 Identities = 68/429 (15%), Positives = 120/429 (27%), Gaps = 69/429 (16%)

Query: 230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLI 289
           LK    + +     WK P   G     +  +++      R     + E   T +++  L 
Sbjct: 2   LKCVTNNLQVWQCSWKAPSGTGRGTDYEVCIEQ------RSRSCYQLE--KTSIKIPALS 53

Query: 290 PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK----DFDTDFVELAW 345
               Y+  + +++  G S    T       N  N    P TPEI     DF T  + L W
Sbjct: 54  HGD-YEITINSLHDFGSSTSKFT------LNEQNVSLIPDTPEILQLSADFSTSTLYLKW 106

Query: 346 T--PPEQNGGSPIVGYI-IEKKEKYSPIWEKCAQTEGDTPKG------KVLDLIEGNQYE 396
                     S ++  I + +KE    +     QT  +               +E   + 
Sbjct: 107 NDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHF 166

Query: 397 FRVLAVNKG----GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG 452
             +          G  E SD +         +     +    D  +  GS+  F      
Sbjct: 167 VEIRCYIDNLHFSGLEEWSDWSPVKQISW--IPDSQTKVFPQDKVILVGSDITFCCVSQE 224

Query: 453 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT- 511
           + +       N   I        +         +  S    + +      N +GT     
Sbjct: 225 KVLSALIGHTNCPLIHLDGENVAI-----KIRNISVSASSGTNVVFTTEDNIFGTVIFAG 279

Query: 512 ---AKVTVLGC--------SLKWNPPEDDG--GAPIEYYMVEKMETDTGKVLIKWIRTND 558
                   L C           WNP       G     Y + +  +              
Sbjct: 280 YPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKY--------VRL 331

Query: 559 KRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD--KPSAPEGPIQ 616
           KR      + +  +  + L   +   +T+ A N  G+ Q  I V +T+   P  P     
Sbjct: 332 KRAEAPTNESYQ-LLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTS--- 387

Query: 617 WLLTLTDVT 625
               + D+ 
Sbjct: 388 --FKVKDIN 394

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 58/398 (14%), Positives = 112/398 (28%), Gaps = 49/398 (12%)

Query: 340 FVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
             + +W  P   G        IE++         C Q E  +   K+  L  G  YE  +
Sbjct: 11  VWQCSWKAPSGTGRGTDYEVCIEQR------SRSCYQLEKTSI--KIPALSHG-DYEITI 61

Query: 400 LAVNKGGPGEPSDPTAPHIARAKKVSPYI----NRDQLSDIKVR---------AGSNFEF 446
            +++  G                  +P I         S + ++           SN  +
Sbjct: 62  NSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIW 121

Query: 447 DINVIGEPIPTKEWLCND-ITIISKDRFKIVNDDKSTKLKV---FDSKRGDSGIYTLAVK 502
           +I V+ +       L     T+  KD     +      L+    F   R        +  
Sbjct: 122 EIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGL 181

Query: 503 NSWGTDKGTAKVTVLGCSLKWNPPED---DGGAPIEYYMVEK---METDTGKVLIKWIRT 556
             W       +++ +  S     P+D     G+ I +  V +   +    G      I  
Sbjct: 182 EEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHL 241

Query: 557 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
           + + V            I+    S +A        +   +     +     P  P+    
Sbjct: 242 DGENV-----------AIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNC 290

Query: 617 WLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY----FTKITIRPLQ 672
               L ++    +             S       + K V +   +       ++  + L 
Sbjct: 291 ETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLP 350

Query: 673 RSDTAQYTVTATNSQGKDQVFIEVVVTD--KPSAPEGP 708
             +   +T+ A N  G+ Q  I V +T+   P  P   
Sbjct: 351 NQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSF 388

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 57.9 bits (139), Expect = 6e-09
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 12/123 (9%)

Query: 201 TVTAENINGKDSVEVEVIVLD--KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE-- 256
           T+ A N  G+    + V + +   P  P    KV ++++  V L W +P +         
Sbjct: 358 TLNAHNPLGRSQSTILVNITEKVYPHTPTS-FKVKDINSTAVKLSWHLPGNFAKINFLCE 416

Query: 257 -KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK-----SEPL 310
            +       +     T  G  E     + ++ L P   Y FR+R   +        S   
Sbjct: 417 IEIKKSNSVQEQRNVTIQG-VENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKK 475

Query: 311 TTT 313
              
Sbjct: 476 QHL 478

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 76.5 bits (188), Expect = 5e-15
 Identities = 49/313 (15%), Positives = 84/313 (26%), Gaps = 68/313 (21%)

Query: 431 DQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKD-------RFKIVNDDKST 482
            +  +     G  F+ D  +    P P   W                  R     D    
Sbjct: 105 AKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 164

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
              V      D   Y    KN+   ++       +    K N      G P+  Y+ + M
Sbjct: 165 FTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYK--GEPVPQYVSKDM 222

Query: 543 ETDTGKVL-------------IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDT 582
               G V                + +         + R+T  N     ++  +     D 
Sbjct: 223 MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE 282

Query: 583 AQYTVTATNSQGKDQVF-IEVVVTDKPSAPEGPIQWL-------LTLT---------DVT 625
             YT    N  GK Q   +++ V   P   + P + +       +T+          +V 
Sbjct: 283 GVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVV 342

Query: 626 WEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN 685
           W  +           P+S         +    D+      + I+ ++  D   Y   ATN
Sbjct: 343 WSHNA---------KPLS-------GGRATVTDSG-----LVIKGVKNGDKGYYGCRATN 381

Query: 686 SQGKDQVFIEVVV 698
             G       V V
Sbjct: 382 EHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 70.7 bits (173), Expect = 4e-13
 Identities = 40/245 (16%), Positives = 71/245 (28%), Gaps = 42/245 (17%)

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRA 440
            V      + Y++   A N     E            K  S      + +    D+  +A
Sbjct: 167 IVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKA 226

Query: 441 GSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT 498
           G            P+    +  N   +    +DR    N     +L    +   D G+YT
Sbjct: 227 GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYT 286

Query: 499 LAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL------- 550
             V N  G  +  + K+TV+        P+       E    + +    G+ +       
Sbjct: 287 CEVDNGVGKPQKHSLKLTVVS------APK------YEQKPEKVIVVKQGQDVTIPCKVT 334

Query: 551 ------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF 599
                 + W       +  +    D+      + I+ ++  D   Y   ATN  G     
Sbjct: 335 GLPAPNVVWSHNAKPLSGGRATVTDSG-----LVIKGVKNGDKGYYGCRATNEHGDKYFE 389

Query: 600 IEVVV 604
             V V
Sbjct: 390 TLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 50/325 (15%), Positives = 93/325 (28%), Gaps = 52/325 (16%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 481
              P + +DQ +++  R  +    +  + G     K  W  +  +   ++    +  D+ 
Sbjct: 4   DKYPVL-KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPED------------ 528
           + L     +  D G Y    +   G                      +            
Sbjct: 63  S-LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLD 121

Query: 529 ---DGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTI--DNVDYFTKITIRPLQRSDTA 583
                  P      +K    +G      +   D+R+T   D   YFT +T      SD  
Sbjct: 122 CVLPNAYPKPLITWKK--RLSGADPNADVTDFDRRITAGPDGNLYFTIVT--KEDVSDIY 177

Query: 584 QYTVTATNSQGKDQV----FIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSL 639
           +Y  TA N+   ++V    +    VT   S  +G         D+         +     
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMM-------AKAGDVT 230

Query: 640 ----------MPI---SLESQYLMND--KRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 684
                     M         + +  +   R+T  N     ++  +     D   YT    
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290

Query: 685 NSQGKDQVF-IEVVVTDKPSAPEGP 708
           N  GK Q   +++ V   P   + P
Sbjct: 291 NGVGKPQKHSLKLTVVSAPKYEQKP 315

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 60/367 (16%), Positives = 94/367 (25%), Gaps = 67/367 (18%)

Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTL 242
              L     Q +D G Y   AE   G   S  +        + P    + + +      L
Sbjct: 61  EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120

Query: 243 DWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE--------VEGLIPNHKY 294
           D  +P+     P       K            + +  +T           V     +  Y
Sbjct: 121 DCVLPN---AYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177

Query: 295 KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV------------- 341
           K+   A N     E +     I+     +  G  G P  +    D +             
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTK-DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY 236

Query: 342 ------ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLI----- 390
                    +       G  + G   ++  +++               GK L        
Sbjct: 237 GSNPMGYPNYFK----NGKDVNGNPEDRITRHNRTS------------GKRLLFKTTLPE 280

Query: 391 -EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDIN 449
            EG  Y       N  G      P    +      +P   +     I V+ G +      
Sbjct: 281 DEGV-YTCE--VDNGVG-----KPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCK 332

Query: 450 VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 509
           V G P P   W  N    +S  R  + +      L +   K GD G Y     N  G   
Sbjct: 333 VTGLPAPNVVWSHNAK-PLSGGRATVTDS----GLVIKGVKNGDKGYYGCRATNEHGDKY 387

Query: 510 GTAKVTV 516
               V V
Sbjct: 388 FETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 33/188 (17%), Positives = 53/188 (28%), Gaps = 41/188 (21%)

Query: 551 IKWIRTNDKRVTIDNVDYFTK-----ITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVV 604
             W + + K       +   +     +     Q SD   Y   A    G      I    
Sbjct: 39  YSWKK-DGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 97

Query: 605 TDKPSAPEGPIQ------WLLTLT----------DVTWEISNYLQELHSSLMPISLESQY 648
           T   ++P    +          L            +TW+                  +  
Sbjct: 98  TYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLS---------GADPNADV 148

Query: 649 LMNDKRVTI--DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF-----IEVVVTDK 701
              D+R+T   D   YFT +T      SD  +Y  TA N+   ++V      I+ V  D 
Sbjct: 149 TDFDRRITAGPDGNLYFTIVT--KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDN 206

Query: 702 PSAPEGPI 709
                 P+
Sbjct: 207 SGYKGEPV 214

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 69.5 bits (170), Expect = 8e-15
 Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
                      V+ + A    + W    D     +  + V+      G      +     
Sbjct: 4   GSHLVATS-ESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQYLDLPSTA 58

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
           T + +  L+P  KY   V  +++ G+   + +T+  
Sbjct: 59  TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 94

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 61.4 bits (149), Expect = 6e-12
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-----VWIPVGKTREPEMDVT 115
             V+ I      + W    D     + G+ VE    E G     + +P   T    +++ 
Sbjct: 12  ESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQYLDLPSTAT---SVNIP 64

Query: 116 GLTPGHEYKFRVKALNKEGESEPLET 141
            L PG +Y   V  ++++GE   + +
Sbjct: 65  DLLPGRKYIVNVYQISEDGEQSLILS 90

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 52.9 bits (127), Expect = 6e-09
 Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 4/96 (4%)

Query: 321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGD 380
           P        +  + +       ++W          + G+ +E +        +       
Sbjct: 2   PLGSHLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPST 57

Query: 381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
                + DL+ G +Y   V  +++ G       T+ 
Sbjct: 58  ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQ 93

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 73.0 bits (178), Expect = 1e-14
 Identities = 33/206 (16%), Positives = 53/206 (25%), Gaps = 15/206 (7%)

Query: 223 PSPPGGPLKVSNVHAE----GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE--- 275
           P   GG  K +N+          L W  P+   G  +  Y V        +W    E   
Sbjct: 3   PCVSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRN 61

Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKD 335
                  L  E     H+Y  RVRA+     S+   +            P +      + 
Sbjct: 62  INRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEK 121

Query: 336 FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGK-----VLDLI 390
             +  +             P+    I    KY+            +         +  L 
Sbjct: 122 SISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLE 181

Query: 391 EGNQYEFRVLAVNKG--GPGEPSDPT 414
               Y   V +   G     +PS+  
Sbjct: 182 PNTLYCVHVESFVPGPPRRAQPSEKQ 207

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 49.5 bits (117), Expect = 8e-07
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG---KTREPEMDVTGLT--PGHEYKFR 126
            L+W  P+   G  +  Y V+ +      W+             D++  T    H+Y  R
Sbjct: 25  VLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYAR 83

Query: 127 VKALNKEGESEPLETFSSIIARDP 150
           V+A+     S+  E+       + 
Sbjct: 84  VRAIWGTKCSKWAESGRFYPFLET 107

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 5/104 (4%)

Query: 327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK---CAQTEGDTPK 383
           KP        +   V L WTPPE       V Y ++        W     C         
Sbjct: 11  KPANITFLSINMKNV-LQWTPPE-GLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCD 68

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 427
                    +QY  RV A+      + ++    +     ++ P 
Sbjct: 69  LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPP 112

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 21/86 (24%), Positives = 32/86 (37%)

Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
           +   +V  G N  F +NV  +P    +W  N + +    +    N      L++ D    
Sbjct: 15  MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTD 74

Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLG 518
           DSG Y     N  G     A + V G
Sbjct: 75  DSGTYRAVCTNYKGEASDYATLDVTG 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
           +KW           ++   N      + I      D+  Y    TN +G+   +  + VT
Sbjct: 40  VKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99

Query: 606 DK 607
             
Sbjct: 100 GG 101

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 10/53 (18%), Positives = 18/53 (33%)

Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
           L    ++   N      + I      D+  Y    TN +G+   +  + VT  
Sbjct: 49  LQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
           +LD P+     L+V+NV    +T+ W  P       I  Y +                  
Sbjct: 1   MLDAPTD----LQVTNVTDTSITVSWTPPSA----TITGYRITYTPSNGPGEPKELTVPP 52

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
             T + + GL P  +Y   V A+    +S PL  T +
Sbjct: 53  SSTSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQT 89

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-----IPVGKTRE 109
           LD    L+V+N+     T+ W  P       + GY +               +P   T  
Sbjct: 2   LDAPTDLQVTNVTDTSITVSWTPPSA----TITGYRITYTPSNGPGEPKELTVPPSST-- 55

Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
             + +TGLTPG EY   V AL    ES PL  
Sbjct: 56  -SVTITGLTPGVEYVVSVYALKDNQESPPLVG 86

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P   ++ +     + ++WTPP     + I GY I       P   K       +    + 
Sbjct: 5   PTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVTIT 60

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            L  G +Y   V A+       P   T 
Sbjct: 61  GLTPGVEYVVSVYALKDNQESPPLVGTQ 88

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 72.3 bits (177), Expect = 1e-14
 Identities = 27/199 (13%), Positives = 64/199 (32%), Gaps = 27/199 (13%)

Query: 432 QLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFD 488
               +++       F +            ++ N+  I    ++K+  D  +   ++ +  
Sbjct: 8   SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK 67

Query: 489 SKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGK 548
            +  D G YT  +++   T+  T  +            E      I       +E  + +
Sbjct: 68  LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 127

Query: 549 VL-------------------IKWIRTNDKRVT----IDNVDYFTKITIRPLQRSDTAQY 585
           V                    I W + +++ ++     D  D    + I    + D   Y
Sbjct: 128 VTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICTLLITEFSKKDAGIY 186

Query: 586 TVTATNSQGKDQVFIEVVV 604
            V   + +GKD+  +++V 
Sbjct: 187 EVILKDDRGKDKSRLKLVD 205

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 46/310 (14%), Positives = 83/310 (26%), Gaps = 53/310 (17%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
            SP   ++ L  + V+ G+      N   G P P   W+ + +  I++D+      +   
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD- 172

Query: 483 KLKVFDSKRGDS-GIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
            L   +    D    Y+   +  +           L         E              
Sbjct: 173 -LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASS 231

Query: 542 METDTGKVL-------------IKWIRTNDKRVTIDNV---DYFTKITIRPLQRSDTAQY 585
                G  L             I W +     +  D     ++   + I  +   D+ +Y
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYK-KGGDLPSDKAKFENFNKALRITNVSEEDSGEY 290

Query: 586 TVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLE 645
              A+N  G  +  I V V   P        WL    ++                   L 
Sbjct: 291 FCLASNKMGSIRHTISVRVKAAP-------YWLDEPKNLILAPG----------EDGRLV 333

Query: 646 SQY----------LMNDKRVTIDNVDYFTKI-----TIRPLQRSDTAQYTVTATNSQGKD 690
            +           ++N + +     +   ++       R  Q S  A Y    +N  G  
Sbjct: 334 CRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYL 393

Query: 691 QVFIEVVVTD 700
                V V D
Sbjct: 394 LANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 72.6 bits (178), Expect = 9e-14
 Identities = 49/346 (14%), Positives = 86/346 (24%), Gaps = 77/346 (22%)

Query: 410 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI 467
           P DP+           P I +    D  V    N   +    G P P+  W  N     I
Sbjct: 4   PMDPSIQ---NELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI 60

Query: 468 ISKDRFKIVNDDKSTKLKVFDSKRG--DSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKWN 524
               R  +     +  +      R     G Y    +N +GT      ++ V        
Sbjct: 61  AKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK------ 114

Query: 525 PPEDDGGAPIEYYMVEKMET---------DTGKVLIKWIRTNDKRVTIDNVDYFTKIT-- 573
                    ++  +V++                 +I W+  +       +          
Sbjct: 115 -SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMS-SSMEPITQDKRVSQGHNGD 172

Query: 574 --IRPLQRSDT-AQYTVTATNSQGKDQV---FIEVVVTDKPSAPEGPIQWL--------- 618
                +   D    Y+  A               + V       E    ++         
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232

Query: 619 -------LTLT---------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY 662
                  L L          D+ W                S ++++   +K + I NV  
Sbjct: 233 MVLRGMDLLLECIASGVPTPDIAW--------YKKGGDLPSDKAKFENFNKALRITNV-- 282

Query: 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
                       D+ +Y   A+N  G  +  I V V   P   + P
Sbjct: 283 ---------SEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEP 319

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
           K +PY   D+  ++ +  G +        G P PT +W+ N   + S            T
Sbjct: 310 KAAPYW-LDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT 368

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
            +   D++     +Y     N  G     A V+VL
Sbjct: 369 -IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 30/145 (20%)

Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS----------PP 226
           K +  ++N  L +      D+G Y   A N  G     + V V   P            P
Sbjct: 267 KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAP 326

Query: 227 GGPLKVSNVHAEGV---TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
           G   ++    A G    T+ W V     G+P++                AG+T      +
Sbjct: 327 GEDGRL-VCRANGNPKPTVQWMVN----GEPLQ------SAPPNPNREVAGDT------I 369

Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSE 308
                  + +  ++    N+ G   
Sbjct: 370 IFRDTQISSRAVYQCNTSNEHGYLL 394

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 72.2 bits (176), Expect = 2e-14
 Identities = 27/208 (12%), Positives = 59/208 (28%), Gaps = 13/208 (6%)

Query: 225 PPGGPLKVS---NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
           PP  P  +S   ++    +   W+   +    P    +      A  ++      +    
Sbjct: 4   PPASPSNLSCLMHLTTNSLVCQWEPGPE-THLPTSFILKSFRSRADCQYQGDTIPDCVAK 62

Query: 282 G------LEVEGLIPNHKYKFRVRAVNKQG--KSEPLTTTASIEAK-NPFNQPGKPGTPE 332
                  +  + L+        V+A N  G  +S  L        K  P         P+
Sbjct: 63  KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122

Query: 333 IKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEG 392
           +       + L+W P + +        +  + +     W           + ++  L + 
Sbjct: 123 VVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQA 182

Query: 393 NQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
             Y  ++  +    PG  S  +     R
Sbjct: 183 PVYTLQMRCIRSSLPGFWSPWSPGLQLR 210

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 73.8 bits (180), Expect = 2e-14
 Identities = 31/225 (13%), Positives = 64/225 (28%), Gaps = 14/225 (6%)

Query: 202 VTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE----- 256
           + AE  N     EV+     + +  G P        + + +       D           
Sbjct: 78  IRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSF 137

Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
            Y +     ++G        E   +  ++  L P   Y  +V+A         + +    
Sbjct: 138 TYSLVIWKNSSGVEE---RIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHC 194

Query: 317 EAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPI---VGYIIEKKEKYSPIWEK 373
                 N+   P   E+   + ++V L W     N    +     ++      +   W++
Sbjct: 195 IKTTVENELPPPENIEVSVQNQNYV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQ 253

Query: 374 CAQTEGDTPKGKVL--DLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
               E       V   ++ +   Y  RV A +       S+    
Sbjct: 254 IPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKF 298

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 64.6 bits (156), Expect = 2e-11
 Identities = 30/220 (13%), Positives = 54/220 (24%), Gaps = 30/220 (13%)

Query: 221 DKPSPPGGPLKVSNVHAEGV----TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE- 275
           D    P        V  + +     L W   D+  G     +  D        W      
Sbjct: 2   DPLKSP------QKVEVDIIDDNFILRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGC 53

Query: 276 --TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEI 333
                         L    + K R+RA  +   S     + +   K     P        
Sbjct: 54  QNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEA-- 111

Query: 334 KDFDTDFVELAWTPPEQNGGS-----PIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLD 388
              +   + +  +P  ++            Y +   +  S + E   + E    + K+  
Sbjct: 112 ---EDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEE---RIENIYSRHKIYK 165

Query: 389 LIEGNQYEFRVLAVNKGGP--GEPSDPTAPHIARAKKVSP 426
           L     Y  +V A        G  S           ++ P
Sbjct: 166 LSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPP 205

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 63.4 bits (153), Expect = 6e-11
 Identities = 34/276 (12%), Positives = 69/276 (25%), Gaps = 41/276 (14%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TREPEMDVT--GLTPGHEYKFR 126
            L+WN+  +  G     +  +        WI +         + + +   L    E K R
Sbjct: 20  ILRWNRSDESVGNV--TFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLR 77

Query: 127 VKALNKEGESEPLETFSSIIARDPYSKYTSV------SSLDSHKRSNQPCGSGMVRKVQH 180
           ++A   E  S   E  S    R        V       ++  H                 
Sbjct: 78  IRAEK-ENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLS 136

Query: 181 LDYN---------TKLGVRMAQRADAGF-------YTVTAE------NINGKDSVEVEVI 218
             Y+          +  +         +       Y +  +         G  S    + 
Sbjct: 137 FTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIK 196

Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE---KYVVDKMDEATGRWTPAGE 275
              +   P       +V  +   L W     +    ++    ++         +W    +
Sbjct: 197 TTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPD 256

Query: 276 TEGPVT--GLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
            E   T   +  + +     Y  RV+A +    S  
Sbjct: 257 CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFW 292

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 48.8 bits (115), Expect = 3e-06
 Identities = 43/298 (14%), Positives = 87/298 (29%), Gaps = 45/298 (15%)

Query: 327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK---CAQTEGDTPK 383
            P   E+   D +F+ L W   +++ G+  V +  + ++     W K   C         
Sbjct: 6   SPQKVEVDIIDDNFI-LRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCN 62

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYIN-RDQLSDIKVRA-- 440
              L L    + + R+ A  +         +     +A+   P ++   +   I +    
Sbjct: 63  FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISP 122

Query: 441 -----------GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST----KLK 485
                      G +F + + +       +E + N        R KI      T    K+K
Sbjct: 123 GTKDSVMWALDGLSFTYSLVIWKNSSGVEERIEN-----IYSRHKIYKLSPETTYCLKVK 177

Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKG-------TAKVTVLGCSLKWNPPEDDGGAPIEYYM 538
                    G+Y+         +            V      LKW+    +    +  ++
Sbjct: 178 AALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQV-QWL 236

Query: 539 VEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYT--VTATNSQG 594
              ++ + G  L KW +  D          F +             Y   V A++   
Sbjct: 237 HAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNV------FQKGIYLLRVQASDGNN 288

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 7/85 (8%)

Query: 65  NIHKDGCTLKWNKPKDDGGEPLE---GYLVEKYDPETGVWIPV---GKTREPEMDVT-GL 117
           ++      LKW+    +    ++    +L          W  +      +  +      +
Sbjct: 212 SVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNV 271

Query: 118 TPGHEYKFRVKALNKEGESEPLETF 142
                Y  RV+A +    S   E  
Sbjct: 272 FQKGIYLLRVQASDGNNTSFWSEEI 296

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 71.7 bits (175), Expect = 2e-14
 Identities = 32/210 (15%), Positives = 49/210 (23%), Gaps = 23/210 (10%)

Query: 223 PSPPGGPLKVSNVHAE----GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE--- 275
                  LK   V  +       L W+ P          Y V        +W    +   
Sbjct: 2   TQSTHESLKPQRVQFQSRNFHNILQWQ-PGRALTGNSSVYFVQYKIYGQRQWKNKEDCWG 60

Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKD 335
           T+     L  E       Y  RVRA +    SE   T            P  P     + 
Sbjct: 61  TQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP--PVMNITQV 118

Query: 336 FDTDFVELAW--TPPEQNGGSPI-------VGYIIEKKEKYSPIWEKCAQTEGDTPKGKV 386
             +  V L     P        +       + Y +          +K    EG     ++
Sbjct: 119 NGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQK--VYEGAHRAVEI 176

Query: 387 LDLIEGNQYEFRVLAVNK--GGPGEPSDPT 414
             L   + Y               + S+  
Sbjct: 177 EALTPHSSYCVVAEIYQPMLDRRSQRSEER 206

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 6/83 (7%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TREPEMDVT--GLTPGHEYKFR 126
            L+W   +   G     Y V+        W        T+E   D+T         Y  R
Sbjct: 24  ILQWQPGRALTGNSS-VYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGR 82

Query: 127 VKALNKEGESEPLETFSSIIARD 149
           V+A +    SE   T       +
Sbjct: 83  VRAASAGSYSEWSMTPRFTPWWE 105

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 40.5 bits (94), Expect = 9e-04
 Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 5/107 (4%)

Query: 323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK---CAQTEG 379
           ++  KP   + +  +   + L W P           Y ++ K      W+    C  T+ 
Sbjct: 6   HESLKPQRVQFQSRNFHNI-LQWQPGR-ALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQE 63

Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
            +             Y  RV A + G   E S           K+ P
Sbjct: 64  LSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP 110

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 73.1 bits (179), Expect = 3e-14
 Identities = 37/307 (12%), Positives = 81/307 (26%), Gaps = 54/307 (17%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 483
             P I      ++ V+ G+         G      EW        +     + +D  S+ 
Sbjct: 3   SIPVIEPSV-PELVVKPGATVTLRCVGNGSV----EWDGPPSPHWT-----LYSDGSSSI 52

Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
           L   ++   ++G Y                + V        P         E  + E  +
Sbjct: 53  LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD------PARPWNVLAQEVVVFEDQD 106

Query: 544 TD-----TG---KVLIKWIRTNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNS 592
                  T    +  +  +R   + +          +   TI   +   +  Y  +A   
Sbjct: 107 ALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMG 166

Query: 593 -QGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLM--------PIS 643
            +    + I + V      P  P         +T   +  ++    +           ++
Sbjct: 167 GRKVMSISIRLKVQKVIPGP--PA--------LTLVPAELVRIRGEAAQIVCSASSVDVN 216

Query: 644 LESQYLMNDKRVTIDNVDYFTKI--------TIRPLQRSDTAQYTVTATNSQGKDQVFIE 695
            +     N+ ++ I     F            +  +       Y+  A+N QGK    + 
Sbjct: 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276

Query: 696 VVVTDKP 702
             V +  
Sbjct: 277 FRVVESA 283

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 10/160 (6%)

Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP-- 608
           ++W        T+ +    + ++       +T  Y  T           I + V D    
Sbjct: 32  VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP 91

Query: 609 SAPEGPIQWLLTLTDVTWE--ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKI 666
                    +    D      +++ + E   SL  + +  + LM     +      F   
Sbjct: 92  WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSL--VRVRGRPLMRHTNYSFSPWHGF--- 146

Query: 667 TIRPLQRSDTAQYTVTATNS-QGKDQVFIEVVVTDKPSAP 705
           TI   +   +  Y  +A    +    + I + V      P
Sbjct: 147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGP 186

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 53.8 bits (129), Expect = 6e-08
 Identities = 21/203 (10%), Positives = 50/203 (24%), Gaps = 22/203 (10%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKS 481
           K           ++ V    +      +           +      + +      +    
Sbjct: 86  KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145

Query: 482 TKLKVFDSKRGDSGIYT-LAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
               +  +K   S  Y   A+         + ++ V    +   PP      P E   + 
Sbjct: 146 --FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ--KVIPGPPALTLV-PAELVRIR 200

Query: 541 KME-------TDTGKVLIKWIRTNDKRVTIDNVDYFTKI--------TIRPLQRSDTAQY 585
                     +        +++ N+ ++ I     F            +  +       Y
Sbjct: 201 GEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260

Query: 586 TVTATNSQGKDQVFIEVVVTDKP 608
           +  A+N QGK    +   V +  
Sbjct: 261 SCVASNVQGKHSTSMFFRVVESA 283

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 74.7 bits (182), Expect = 3e-14
 Identities = 53/397 (13%), Positives = 103/397 (25%), Gaps = 56/397 (14%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TREPEMDVT--GLTPGHEYKFR 126
            L+WN+  +  G     +  +        WI +         + + +   L    E K R
Sbjct: 24  ILRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLR 81

Query: 127 VKALNKEGESEPLETFSSIIARDPY---------SKYTSVSSLDSHKRSNQPCGSGMVRK 177
           ++A  KE  S   E  S    R            ++  ++    S    +    +     
Sbjct: 82  IRA-EKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLS 140

Query: 178 VQHLDYNTKLGVRMAQRADAGFYTVTAE-------------------NINGKDSVEVEVI 218
             +     K    + +R +  +                            G  S    + 
Sbjct: 141 FTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIK 200

Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE---KYVVDKMDEATGRWTPAGE 275
              +   P       +V  +   L W     +    ++    ++         +W    +
Sbjct: 201 TTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPD 260

Query: 276 TEGPVTGLEV--EGLIPNHKYKFRVRAVNKQGKSEPLTT-TASIEAKNPFNQPGKPGTPE 332
            E   T   V  + +     Y  RV+A +    S          E +     P       
Sbjct: 261 CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSL 320

Query: 333 IKDFDTDFVELAWTPPEQNGGSPI-----VGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
                +D   +    P+Q+G +P+     + Y I   E  S    K            V 
Sbjct: 321 -----SDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERK---IIEKKTDVTVP 372

Query: 388 DLIEGNQYEFRVLA-VNKGGPGEPSDPTAPHIARAKK 423
           +L     Y  +  A        + S  +     + K 
Sbjct: 373 NLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKP 409

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 61.9 bits (149), Expect = 3e-10
 Identities = 57/414 (13%), Positives = 98/414 (23%), Gaps = 63/414 (15%)

Query: 234 NVHAE----GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE---TEGPVTGLEVE 286
            V  +       L W   D+  G     +  D        W                   
Sbjct: 13  KVEVDIIDDNFILRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSL 70

Query: 287 GLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWT 346
            L    + K R+RA  +   S     + +   K     P      E K            
Sbjct: 71  KLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKD 130

Query: 347 PPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG 406
                       Y +   +  S + E   + E    + K+  L     Y  +V A     
Sbjct: 131 SVMWALDGLSFTYSLVIWKNSSGVEE---RIENIYSRHKIYKLSPETTYCLKVKAALLTS 187

Query: 407 PGE-PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI 465
                  P        +   P     ++S         +++    +   +          
Sbjct: 188 WKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRN 247

Query: 466 TIISKDRFKIVNDDKSTKLKVFDSKRG--DSGIYTLAVKNSWG-------------TDKG 510
                 ++K + D ++ K       +     GIY L V+ S G             T+  
Sbjct: 248 PGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQ 307

Query: 511 TA------KVTVLGCSL--KWNPPEDDGGAPIE-----YYMVEKMETDTGKVLIKWIRTN 557
                    +  L  S       P+  G  P+       Y +   E  +     + I   
Sbjct: 308 AFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAE--RKIIEK 365

Query: 558 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
              VT+ N+   T              Y V A       +        +K S  
Sbjct: 366 KTDVTVPNLKPLT-------------VYCVKA-------RAHTMDEKLNKSSVF 399

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 490
           Q+       G + ++   +      T+  W      + + ++++I  +D    L V D  
Sbjct: 7   QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDIT 66

Query: 491 RGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
           + D G Y   V N +G D   A++ V G
Sbjct: 67  KLDDGTYRCKVVNDYGEDSSYAELFVKG 94

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W        N ++  I   D    + ++ + + D   Y     N  G+D  + E+ V
Sbjct: 34  VTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 73.2 bits (179), Expect = 4e-14
 Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 21/193 (10%)

Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 489
           + Q+ +  V  G +      V G  +    W+  ++   +    K              +
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVT 220

Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
              +    T   +N  G  + + +V V        P        +E +      +  G+ 
Sbjct: 221 SDLNRKNVTCWAENDVGRAEVSVQVNVSF------PASVQLHTAVEMHHWCIPFSVDGQP 274

Query: 550 L--IKWIR-----TNDKRVTIDNVDYFTK-------ITIRPLQRSDTAQYTVTATNSQGK 595
              ++W+           +  + ++           + +      +   YT+ A N  G+
Sbjct: 275 APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ 334

Query: 596 DQVFIEVVVTDKP 608
               I     D P
Sbjct: 335 ASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 22/167 (13%), Positives = 42/167 (25%), Gaps = 24/167 (14%)

Query: 551 IKWIRTNDK-RVTIDNVDYFTKIT---IRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
             WI T  +   T+        +           +    T  A N  G+ +V ++V V+ 
Sbjct: 190 AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF 249

Query: 607 KPSAPEGPIQWLLTLT-----------DVTWEISNYLQELHSSLMPISLESQYLMNDKRV 655
             S        +                + W  +            ++  S         
Sbjct: 250 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNG---------SVLNETSFIFTEFLEP 300

Query: 656 TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
             +       + +      +   YT+ A N  G+    I     D P
Sbjct: 301 AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
           L +      + G YT+ A N  G+ S  +    +D P
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 67.7 bits (165), Expect = 6e-14
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 4/105 (3%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE--- 277
               P    L V++V    + L+W+ P       + ++ V           P  + E   
Sbjct: 6   SGSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMV 65

Query: 278 -GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNP 321
            G      +  L     Y   +  +    K++ +  TA   +   
Sbjct: 66  PGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGPS 110

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 14/93 (15%)

Query: 59  GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPE------- 111
             L V+++      L W  P        + +L+    P      P  +            
Sbjct: 13  SQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68

Query: 112 ---MDVTGLTPGHEYKFRVKALNKEGESEPLET 141
                +  L  G  Y   +  L    +++ ++ 
Sbjct: 69  RHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQG 101

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
             +     + D  T  + L W  P     S ++ + +       P      Q E   P  
Sbjct: 9   RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68

Query: 385 K----VLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
           +    + DL  G  Y   +  +      +    TA
Sbjct: 69  RHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 103

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 70.7 bits (172), Expect = 7e-14
 Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 32/213 (15%)

Query: 123 YKFRVKALNKEGESEPLETFSSIIARDPYS-KYTSVSSLDSHKRSNQPCGSGMVR----- 176
               V     E  +     +   +  D  + +Y    S D    + +    G VR     
Sbjct: 28  ENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSS 87

Query: 177 -----------------KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
                            + +     + L V  +   D               ++      
Sbjct: 88  LTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSP 147

Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
               +P     K S ++ + VT+ W  P+   G  +E Y++ K            E    
Sbjct: 148 EIVVNPVR-DFKASEINKKNVTVTWTEPETTEG--LEGYILYK------DGKKVAEIGKD 198

Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTT 312
            T    + L  +  Y F++ A    G+     +
Sbjct: 199 ETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKES 231

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 69.6 bits (169), Expect = 2e-13
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
           +P    + S I+K   T+ W +P+   G  LEGY++ K     G  +      E      
Sbjct: 152 NPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYK----DGKKVAEIGKDETSYTFK 205

Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
            L     Y F++ A    GE    E+ +   AR
Sbjct: 206 KLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 63.8 bits (154), Expect = 2e-11
 Identities = 33/213 (15%), Positives = 57/213 (26%), Gaps = 21/213 (9%)

Query: 206 NINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDE 265
            I+   + E                 V  +  +GV ++ K  +D   + +   +  +   
Sbjct: 35  GIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPLP 94

Query: 266 ATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE-----PLTTTASIEAKN 320
           A                L  E             +V               T   IE  +
Sbjct: 95  AKEVLA--------KVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTS 146

Query: 321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGD 380
           P          +  + +   V + WT PE   G  + GYI+ K        +K A+   D
Sbjct: 147 PEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYKD------GKKVAEIGKD 198

Query: 381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
                   L     Y F++ A    G     + 
Sbjct: 199 ETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKES 231

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 38/244 (15%), Positives = 74/244 (30%), Gaps = 45/244 (18%)

Query: 371 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN-KGGPGEPSDPTAPHIARAKKVSPYIN 429
            ++ A+  G      + ++  G   E  V             D T  +   A +    I+
Sbjct: 6   LKEAAEVTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAIS 65

Query: 430 RDQ--LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF 487
            D   ++  K+  G       ++ GEP+P KE L       +K   +     + + L V 
Sbjct: 66  DDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVL-------AKVVLRAEAKTEGSNLSVT 118

Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAK-----------------VTVLGCSLKWNPPEDDG 530
           +S  GD       +  +  T                       +     ++ W  PE   
Sbjct: 119 NSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTE 178

Query: 531 GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 590
           G  +E Y++ K      ++       ++   T   ++  T              + + A 
Sbjct: 179 G--LEGYILYKDGKKVAEI-----GKDETSYTFKKLNRHTIYN-----------FKIAAK 220

Query: 591 NSQG 594
            S G
Sbjct: 221 YSNG 224

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 67.1 bits (164), Expect = 9e-14
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P       +       + LAW  P    G  ++ Y ++  EK +         +    + 
Sbjct: 8   PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
           ++  L  G  Y  +V A ++ G G     
Sbjct: 67  ELRGLKRGASYLVQVRARSEAGYGPFGQE 95

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
             P      ++V+      ++L W VP    G  +  Y V   ++     +     +   
Sbjct: 6   SGPPAVSD-IRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSE 63

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTTASIEA 318
              E+ GL     Y  +VRA ++ G     +   +   +++
Sbjct: 64  NRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDS 104

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 60  PLEVSNIHKDGCT-----LKWNKPKDDGGEPLEGYLVE--KYDPETGVWIPVGKTREPEM 112
           P  VS+I     +     L W  P+   G  +  Y V+  +   E    +   KT E   
Sbjct: 8   PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEP 138
           ++ GL  G  Y  +V+A ++ G    
Sbjct: 67  ELRGLKRGASYLVQVRARSEAGYGPF 92

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKR 491
           L D  VR G +    I V GEP P   WL N   +   + RF    +    +L++  ++R
Sbjct: 12  LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER 71

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLG 518
           GD+G YT    N +G  +  A++ V G
Sbjct: 72  GDAGFYTCKAVNEYGARQCEARLEVRG 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W      +R + +R   +      ++ I   +R D   YT  A N  G  Q    + V
Sbjct: 37  VSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

Query: 605 TDK 607
             +
Sbjct: 97  RGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
           + +R   +      ++ I   +R D   YT  A N  G  Q    + V  +
Sbjct: 49  DQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
           +L  P      L VS V  + + L W  PD       + +++   +             G
Sbjct: 1   MLPAPKN----LVVSEVTEDSLRLSWTAPDA----AFDSFMIQYQESEKVGEAINLTVPG 52

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
                ++ GL P  +Y   +  V    +S PL+   +
Sbjct: 53  SERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAEFT 89

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYD---PETGVWIPVGKTREPE 111
           L     L VS + +D   L W  P        + ++++  +       + + V  + E  
Sbjct: 2   LPAPKNLVVSEVTEDSLRLSWTAPDA----AFDSFMIQYQESEKVGEAINLTVPGS-ERS 56

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLET 141
            D+TGL PG EY   +  +     S PL  
Sbjct: 57  YDLTGLKPGTEYTVSIYGVKGGHRSNPLSA 86

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P    + +   D + L+WT P+    +    ++I+ +E             G      + 
Sbjct: 5   PKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYDLT 60

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            L  G +Y   +  V  G    P     
Sbjct: 61  GLKPGTEYTVSIYGVKGGHRSNPLSAEF 88

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 212 SVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW 270
           S +++VI     P  P    K        + L W  P  D    I  Y +   D   G  
Sbjct: 6   SGDIQVITQTGVPGQPLN-FKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEE 61

Query: 271 TPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
                T  P T   ++GL PN  Y FR+ A + QG    
Sbjct: 62  QRI--TIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGAS 98

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 314 ASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
             I+       PG+P   + +      + L+WTPP ++    I  Y +  K+      ++
Sbjct: 7   GDIQVITQTGVPGQPLNFKAEPESETSILLSWTPP-RSD--TIANYELVYKDGEHGEEQR 63

Query: 374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
              T       ++  L   + Y FR+ A +  G G  +   
Sbjct: 64  --ITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 102

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           P  P   +     +    L W  P+ D    +  Y +   D E G    +         +
Sbjct: 18  PGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIEPGTSYRL 74

Query: 115 TGLTPGHEYKFRVKALNKEGESEP 138
            GL P   Y FR+ A + +G    
Sbjct: 75  QGLKPNSLYYFRLAARSPQGLGAS 98

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 71.0 bits (173), Expect = 3e-13
 Identities = 39/318 (12%), Positives = 84/318 (26%), Gaps = 71/318 (22%)

Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN-----------------D 478
           +  + G   E       +      W  ++   I  ++   +                  D
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDG-------- 530
             +  L + + K  DS  Y   V++     K   ++ V G +   +     G        
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLVFGLTANSDTHLLQGQSLTLTLE 119

Query: 531 --GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 588
                                 ++      K +          +++  L+  D+  +T T
Sbjct: 120 SPPGS--------------SPSVQCRSPRGKNIQGGKT-----LSVSQLELQDSGTWTCT 160

Query: 589 ATNSQGKDQVFIEVVVTDKPSAPEGPIQ---------WLLTLTDVTWEISNYL------Q 633
              +Q K +  I++VV     A     +         + L  T      S  L       
Sbjct: 161 VLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA 220

Query: 634 ELHSSLMPISLESQYL------MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 687
               S +   L+++ +       + K      +     +     Q + +   T+      
Sbjct: 221 SSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKT 280

Query: 688 GKDQVFIEVVVTDKPSAP 705
           GK    + +VV       
Sbjct: 281 GKLHQEVNLVVMRATQLQ 298

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 63.3 bits (153), Expect = 9e-11
 Identities = 31/238 (13%), Positives = 65/238 (27%), Gaps = 48/238 (20%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
           SD  +  G +    +       P+ +            R K +   K+  L V   +  D
Sbjct: 104 SDTHLLQGQSLTLTLESPPGSSPSVQCR--------SPRGKNIQGGKT--LSVSQLELQD 153

Query: 494 SGIYTLAVKNSWGTDKGTAKVTV-------------------LGCSLKWNPPEDDGGAPI 534
           SG +T  V  +    +    + V                       L +   +  G   +
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGEL 213

Query: 535 EYYM--------VEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 586
            +              +    +V +K +  + K      +     +     Q + +   T
Sbjct: 214 WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT 273

Query: 587 VTATNSQGKDQVFIEVVVTDKPSAPE-------GP----IQWLLTLTDVTWEISNYLQ 633
           +      GK    + +VV       +       GP    +   L L +   ++S   +
Sbjct: 274 LALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK 331

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 2/126 (1%)

Query: 148 RDPYSKYTSVSSLDSHKRSNQPCGSGM-VRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN 206
           R   SK      L + + S +       ++  + L  +  L   + Q A +G  T+  E 
Sbjct: 219 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA 278

Query: 207 INGKDSVEVEVIVLDKPSPPGG-PLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDE 265
             GK   EV ++V+           +V    +  + L  K+ + +      +  V  ++ 
Sbjct: 279 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP 338

Query: 266 ATGRWT 271
             G W 
Sbjct: 339 EAGMWQ 344

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 41/145 (28%)

Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP--EGPIQWLLTLT-------- 622
            I+ L+  D+  Y     + + + Q+ +   +T        +G     LTLT        
Sbjct: 70  IIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANSDTHLLQGQS---LTLTLESPPGSS 125

Query: 623 -DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTV 681
             V                      + +   K +++  +           +  D+  +T 
Sbjct: 126 PSVQCRSPR---------------GKNIQGGKTLSVSQL-----------ELQDSGTWTC 159

Query: 682 TATNSQGKDQVFIEVVVTDKPSAPE 706
           T   +Q K +  I++VV     A  
Sbjct: 160 TVLQNQKKVEFKIDIVVLAFQKASS 184

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE 396
               +   W PP    G  I  YI+E     S +W         +   ++ +L+    Y 
Sbjct: 22  AEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWAS---QRAASNFTEIKNLLVNTLYT 77

Query: 397 FRVLAVNKGGPGEPSDPT 414
            RV AV   G G  SD  
Sbjct: 78  VRVAAVTSRGIGNWSDSK 95

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 221 DKPSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
             P  P    L +       +   W  P    G  I +Y+V+     +  W         
Sbjct: 6   SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGL-IREYIVEYSRSGSKMWA---SQRAA 61

Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGK---SEPLTTT 313
               E++ L+ N  Y  RV AV  +G    S+  + T
Sbjct: 62  SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSIT 98

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131
              W  P    G  +  Y+VE     + +W    +      ++  L     Y  RV A+ 
Sbjct: 27  VGHWAPPIHTHGL-IREYIVEYSRSGSKMWASQ-RAASNFTEIKNLLVNTLYTVRVAAVT 84

Query: 132 KEGESEP 138
             G    
Sbjct: 85  SRGIGNW 91

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 69.6 bits (170), Expect = 4e-13
 Identities = 43/309 (13%), Positives = 76/309 (24%), Gaps = 60/309 (19%)

Query: 425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKL 484
           +P I      ++ V  G          G      EW        + D      +   + L
Sbjct: 4   APVIEPSG-PELVVEPGETVTLRCVSNGSV----EWDGPISPYWTLD-----PESPGSTL 53

Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMET 544
              ++   ++G Y             T  + V        P         E  +VE  E 
Sbjct: 54  TTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKD------PAHSWNLLAQEVTVVEGQEA 107

Query: 545 D-----TG---KVLIKWIRTNDKRVTIDNVDYF----TKITIRPLQRSDTAQYTVTATNS 592
                 T    K  +  +R    R  +    YF        IR  +  D+  Y      +
Sbjct: 108 VLPCLITDPALKDSVSLMR-EGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVN 166

Query: 593 -QGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTW----------EISNYLQELHSSLMP 641
            +      I + V         P Q  L  + +              +N           
Sbjct: 167 GRESTSTGIWLKVNRVHPE---PPQIKLEPSKLVRIRGEAAQIVCSATNA---------E 214

Query: 642 ISLESQYLMNDKRVTIDNVDYFTKI--------TIRPLQRSDTAQYTVTATNSQGKDQVF 693
           +         D ++ I     F           ++  +   D   Y+  A+N  G     
Sbjct: 215 VGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTAT 274

Query: 694 IEVVVTDKP 702
           +   V +  
Sbjct: 275 MNFQVVESH 283

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 21/202 (10%), Positives = 54/202 (26%), Gaps = 20/202 (9%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKS 481
           K   +       ++ V  G        +       +   +      + +      +  + 
Sbjct: 86  KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG 145

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
               +  +K  DS  Y      + G +  +  + +    +   PP+     P +   +  
Sbjct: 146 --FIIRKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVNRVHPEPPQIKLE-PSKLVRIRG 201

Query: 542 ME-------TDTGKVLIKWIRTNDKRVTIDNVDYFTKI--------TIRPLQRSDTAQYT 586
                    T+        ++  D ++ I     F           ++  +   D   Y+
Sbjct: 202 EAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYS 261

Query: 587 VTATNSQGKDQVFIEVVVTDKP 608
             A+N  G     +   V +  
Sbjct: 262 CVASNDVGTRTATMNFQVVESH 283

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 22/160 (13%), Positives = 44/160 (27%), Gaps = 10/160 (6%)

Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS- 609
           ++W        T+D     + +T R     +T  Y  T           I + V D    
Sbjct: 32  VEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHS 91

Query: 610 -APEGPIQWLLTLTDVTWE--ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKI 666
                    ++   +      I++    L  S+  +    + ++            F   
Sbjct: 92  WNLLAQEVTVVEGQEAVLPCLITDP--ALKDSVSLMREGGRQVLRKTVYFFSPWRGF--- 146

Query: 667 TIRPLQRSDTAQYTVTATNS-QGKDQVFIEVVVTDKPSAP 705
            IR  +  D+  Y      + +      I + V      P
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 5/120 (4%)

Query: 401 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 460
            +  G     S      + R     P I   + S +    G   +   +     +     
Sbjct: 163 TMVNGR-ESTSTGIWLKVNRVHPEPPQIKL-EPSKLVRIRGEAAQIVCSATNAEVGFNVI 220

Query: 461 LCND---ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
           L      + I     F+     K   L +      D+GIY+    N  GT   T    V+
Sbjct: 221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 64.4 bits (157), Expect = 5e-13
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 412 DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD 471
           +  AP+    +K+             V A +  +F     G P+PT  WL N      + 
Sbjct: 1   NKRAPYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 53

Query: 472 RFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
           R       ++   L +      D G YT  V+N +G+   T  + V+
Sbjct: 54  RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKR 491
             ++ +  G     D  V G P P   W  N  T+ S D  K++ ++     L     + 
Sbjct: 12  PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA 71

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLG 518
            D+G Y    KN  G    T ++ VL 
Sbjct: 72  SDAGAYACVAKNRAGEATFTVQLDVLA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W      ++++D    I +      +    ++ SD   Y   A N  G+    +++ V
Sbjct: 37  VSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

Query: 605 TDK 607
             K
Sbjct: 97  LAK 99

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 64.8 bits (158), Expect = 6e-13
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 221 DKPSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
              S    P  L +++   + + + W  P       +  Y +     +      +    G
Sbjct: 3   SGSSGRSPPSNLALASETPDSLQVSWTPPLG----RVLHYWLTYAPASGLGPEKSVSVPG 58

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA 314
             + + +  L    KY+  V A+   G+SE ++ T 
Sbjct: 59  ARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATG 94

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD- 113
              P  L +++   D   + W  P       +  Y +  Y P +G+      +       
Sbjct: 8   RSPPSNLALASETPDSLQVSWTPPLG----RVLHYWLT-YAPASGLGPEKSVSVPGARSH 62

Query: 114 --VTGLTPGHEYKFRVKALNKEGESEPLET 141
             +  L    +Y+  V A+   G SE +  
Sbjct: 63  VTLPDLQAATKYRVLVSAIYAAGRSEAVSA 92

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
              P    +     D ++++WTPP       ++ Y +          EK     G     
Sbjct: 8   RSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPGARSHV 63

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            + DL    +Y   V A+   G  E    T 
Sbjct: 64  TLPDLQAATKYRVLVSAIYAAGRSEAVSATG 94

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 68.4 bits (167), Expect = 9e-13
 Identities = 57/316 (18%), Positives = 100/316 (31%), Gaps = 78/316 (24%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEP-IPTKEWL-CNDITIISKD-RFKIV-NDDKSTKLKVF 487
             S  ++  G +  F   V G+       W   N   +     R  +V NDD S+ L ++
Sbjct: 8   VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67

Query: 488 DSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDT 546
           ++   D+GIY   V    GT    T  V +               AP         E   
Sbjct: 68  NANIDDAGIYKCVVTAEDGTQSEATVNVKI-------FQKLMFKNAP------TPQEFKE 114

Query: 547 GKVL-------------IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 586
           G+               I W           D R  + + +Y     IR ++++D   Y 
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL---QIRGIKKTDEGTYR 171

Query: 587 VTATNSQGKDQVF--IEVVVTDKPSAPEGPIQWLLTLTD-----------------VTWE 627
                    +  F  I+V+V   P+          T                    ++W 
Sbjct: 172 CEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSW- 230

Query: 628 ISNYLQELHSSLMPISLESQYLMNDKRVTIDN--VDYFTKITIRPLQRSDTAQYTVTATN 685
                          + + + + N++     +   D  +++TIR + ++D A+Y   A N
Sbjct: 231 ---------------TKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAEN 275

Query: 686 SQGKDQVFIEVVVTDK 701
             G+    I + V  K
Sbjct: 276 KAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 65.7 bits (160), Expect = 7e-12
 Identities = 31/206 (15%), Positives = 66/206 (32%), Gaps = 33/206 (16%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
                  ++  +  + + G +     +V+    PT  W      +I K   + +    + 
Sbjct: 98  FQKLMF-KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 156

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
            L++   K+ D G Y    +     +     + V+       PP            +   
Sbjct: 157 -LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV----PPT-----VQARQSIVNA 206

Query: 543 ETDTGKVL-------------IKWIRTNDKRVTIDNVDYFTKI--------TIRPLQRSD 581
             + G+ +             + W + + + +  +  D    I        TIR + ++D
Sbjct: 207 TANLGQSVTLVCDADGFPEPTMSWTK-DGEPIENEEEDDEKHIFSDDSSELTIRNVDKND 265

Query: 582 TAQYTVTATNSQGKDQVFIEVVVTDK 607
            A+Y   A N  G+    I + V  K
Sbjct: 266 EAEYVCIAENKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 43/179 (24%)

Query: 551 IKWIR-------TNDKRVTIDNVDYFTKI-TIRPLQRSDTAQYTVTATNSQGKDQ-VFIE 601
           I W          N +R+++   D  +   TI      D   Y    T   G      + 
Sbjct: 35  ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVN 94

Query: 602 VVVTDKPSAPEGP-IQWLL-----TLT---------DVTWEISNYLQELHSSLMPISLES 646
           V +  K      P  Q         +           + W+              + L+ 
Sbjct: 95  VKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKG---------RDVILK- 144

Query: 647 QYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVVTDKPS 703
                D R  + + +Y     IR ++++D   Y          +  F  I+V+V   P+
Sbjct: 145 ----KDVRFIVLSNNYL---QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPT 196

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
           +   P   ++V +V      + W  P      P++ + +    +         +      
Sbjct: 2   RLDAPSQ-IEVKDVTDTTALITWMPPSQ----PVDGFELTYGIKDVPGDRTTIDLTEDEN 56

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
              +  L P+ +Y+  + +      S P   T +
Sbjct: 57  QYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT 90

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 55  LDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE---KYDPETGVWIPVGKTRE 109
           +  + P  +EV ++      + W  P      P++G+ +    K  P     I + +  E
Sbjct: 1   MRLDAPSQIEVKDVTDTTALITWMPPSQ----PVDGFELTYGIKDVPGDRTTIDLTED-E 55

Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
            +  +  L P  EY+  + +   +  S P + 
Sbjct: 56  NQYSIGNLKPDTEYEVSLISRRGDMSSNPAKE 87

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P   E+KD       + W PP      P+ G+ +    K  P          D  +  + 
Sbjct: 6   PSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIG 61

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
           +L    +YE  +++        P+  T 
Sbjct: 62  NLKPDTEYEVSLISRRGDMSSNPAKETF 89

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P               + L+W  PEQ  G  I+ Y I   EK    +         T   
Sbjct: 8   PSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSS-MARSQTNTA 65

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           ++  L  G  Y  +V A    G G+ S   
Sbjct: 66  RIDGLRPGMVYVVQVRARTVAGYGKFSGKM 95

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
             PS     +   +     +TL W  P+   G  I  Y +   ++    +  +       
Sbjct: 6   SGPSTVPI-MHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSS-MARSQT 62

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
               ++GL P   Y  +VRA    G    S  +   
Sbjct: 63  NTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQ 98

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 53.6 bits (129), Expect = 4e-09
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 56  DPEGPLEVSNIHKDGCT-----LKWNKPKDDGGEPLEGYLVEKYDPETGVWIP-VGKTRE 109
              GP  V  +H+   T     L W +P+   G  +  Y +  Y+ E   +   + +++ 
Sbjct: 4   GSSGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQT 62

Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGE---SEPLE 140
               + GL PG  Y  +V+A    G    S  + 
Sbjct: 63  NTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMC 96

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 68.9 bits (168), Expect = 1e-12
 Identities = 37/298 (12%), Positives = 81/298 (27%), Gaps = 50/298 (16%)

Query: 442 SNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA 500
               + +     P     W  ND    +  +    +       L +  + + DSG Y   
Sbjct: 41  PQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCT 99

Query: 501 VKNSWGTDKGTAKVTVL---GCSLKWNPPEDD----GGAPIEYYMVEKMETDTGKVLIKW 553
            +N+   DK + ++ V       L +              +    + +   D   V I+W
Sbjct: 100 TRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQW 159

Query: 554 IRTNDKRVTIDNVDYF-----TKITIRPLQRSDTAQYTVTATNSQGKDQ--VFIEVVVTD 606
            + +   +  DN  +      T + +  +   D   Y    T +    Q  +   + +  
Sbjct: 160 YK-DSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI 218

Query: 607 KPSAPEGPIQWLLTLTDVT--------------------------WEISNYLQELHSSLM 640
           K    E     +  L  ++                          W  ++   E      
Sbjct: 219 KKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGG 278

Query: 641 PISLESQYLMNDKRVTIDNVDYFTKI-TIRPLQRSDT-AQYTVTATNSQGKDQVFIEV 696
            ++         +  + +N +Y        P+ R D    +     N+     +   V
Sbjct: 279 RVTEG-----PRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 22/175 (12%)

Query: 551 IKWIRTNDKRVTIDNVDYFT-----KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
           + W + +  R      +         + + P  + D+  Y  T  N+   D++ IE+ V 
Sbjct: 57  LTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF 116

Query: 606 DKPSAPEGPI---QWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY 662
           +   A    I   Q L   T       +  +           + Q+  +   +  DN  +
Sbjct: 117 ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV---KIQWYKDSLLLDKDNEKF 173

Query: 663 F-----TKITIRPLQRSDTAQYTVTATNSQGKDQ------VFIEVVVTDKPSAPE 706
                 T + +  +   D   Y    T +    Q      + + +    + + P 
Sbjct: 174 LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPV 228

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 6/120 (5%)

Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
           +  +    +  D  E           P   L+V       + + W  P       +  Y 
Sbjct: 7   HHSSDYKDDD-DKGENLYFQGSVSDVPTK-LEVVAATPTSLLISWDAPAV----TVRYYR 60

Query: 260 VDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
           +   +             G  +   + GL P   Y   V AV         +   SI  +
Sbjct: 61  ITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 16/129 (12%), Positives = 25/129 (19%), Gaps = 11/129 (8%)

Query: 292 HKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQN 351
           H +                            +    P   E+       + ++W  P   
Sbjct: 3   HHHHHHSSDYKDDDDKGENLYFQG-------SVSDVPTKLEVVAATPTSLLISWDAPA-- 53

Query: 352 GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
               +  Y I   E       +     G      +  L  G  Y   V AV         
Sbjct: 54  --VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111

Query: 412 DPTAPHIAR 420
                   R
Sbjct: 112 SKPISINYR 120

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW------IPVGKTR 108
            + P  LEV         + W+ P       +  Y +  Y    G        +P  K+ 
Sbjct: 29  SDVPTKLEVVAATPTSLLISWDAPAV----TVRYYRIT-YGETGGNSPVQEFTVPGSKST 83

Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
                ++GL PG +Y   V A+             SI  R
Sbjct: 84  ---ATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 2/99 (2%)

Query: 421 AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 480
           +    P+  +    D+ V+ G     D  V G P P   W  +   +      K++  + 
Sbjct: 5   SSGFRPHFLQ-APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63

Query: 481 ST-KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
               L +      D+GIYT    N  G +  + ++ V  
Sbjct: 64  GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W      +R +     +   +    + I P+   D   YT  ATN  G++   +E+VV
Sbjct: 41  LSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100

Query: 605 TDKPSAP 611
             K S P
Sbjct: 101 AAKESGP 107

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPG 227
               DAG YT  A N  G++S  +E++V  K S P 
Sbjct: 73  VTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
            I P+   D   YT  ATN  G++   +E+VV  K S P
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            +PP   L  S+V  +   + W+        P+    V     + G  +   E  G  T 
Sbjct: 8   LAPPRH-LGFSDVSHDAARVFWEGAPR----PVRLVRVTY-VSSEGGHSGQTEAPGNATS 61

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA 314
             +  L  +  Y  RV  +   G S  LT   
Sbjct: 62  AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRV 93

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 58.2 bits (141), Expect = 9e-11
 Identities = 21/93 (22%), Positives = 27/93 (29%), Gaps = 13/93 (13%)

Query: 54  GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-----IPVGKTR 108
           GL P   L  S++  D   + W         P+    V  Y    G        P   T 
Sbjct: 7   GLAPPRHLGFSDVSHDAARVFWEGAPR----PVRLVRVT-YVSSEGGHSGQTEAPGNAT- 60

Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
                +  L+    Y  RV  L   G S  L  
Sbjct: 61  --SAMLGPLSSSTTYTVRVTCLYPGGGSSTLTG 91

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 12/91 (13%), Positives = 19/91 (20%), Gaps = 5/91 (5%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
              P      D   D   + W         P+    +              +  G+    
Sbjct: 8   LAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGG-HSGQTEAPGNATSA 62

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            +  L     Y  RV  +  GG         
Sbjct: 63  MLGPLSSSTTYTVRVTCLYPGGGSSTLTGRV 93

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           PG  G     +     ++++W  P +  G  + GY I  +E               T + 
Sbjct: 18  PGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEY 76

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           +V  L     Y   V A+   G G+ S  T
Sbjct: 77  RVTGLTALTTYTIEVAAMTSKGQGQVSAST 106

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
           D P P G  L  S +    + + W+ P +  G  +  Y +   +                
Sbjct: 16  DVPGPVG-HLSFSEILDTSLKVSWQEPGEKNGI-LTGYRISWEEYNRTNTRVTHYLPNVT 73

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTTA 314
               V GL     Y   V A+  +G    S    ++ 
Sbjct: 74  LEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSG 110

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLV--EKYDPETGVWIPVGKTREPEM 112
           P     L  S I      + W +P +  G  L GY +  E+Y+               E 
Sbjct: 18  PGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEY 76

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEP 138
            VTGLT    Y   V A+  +G+ + 
Sbjct: 77  RVTGLTALTTYTIEVAAMTSKGQGQV 102

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
           +V+P I    L +     G + E      G P P   W  ++ T++      + + +++ 
Sbjct: 8   RVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN- 65

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
            L +   ++ D G+YT    +  G  K  A   + G
Sbjct: 66  -LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%)

Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
             +   D N  L +R  ++ D G YT  A ++ G   VE   I+       
Sbjct: 55  SGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 68.5 bits (166), Expect = 2e-12
 Identities = 40/322 (12%), Positives = 86/322 (26%), Gaps = 62/322 (19%)

Query: 49  VEKDRGLDPEGPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVEKY--------DPETG 99
           V   + + P  P ++  +  +D   L W+                ++        D    
Sbjct: 101 VTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWED 160

Query: 100 VWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSS 159
             I +  T +  +    L P   Y  RV+     G                 S+    + 
Sbjct: 161 AAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQ 220

Query: 160 LDSH------------------------------KRSNQPCGSGMVRKVQHLDYNTKLG- 188
             +                               K S     + ++R+ +      +   
Sbjct: 221 PQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLG 280

Query: 189 ---------VRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEG 239
                    + +   A  G Y V+ +    +  ++  V +  + +PP   L+V+    + 
Sbjct: 281 SLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNI--QMAPP--SLQVT-KDGDS 335

Query: 240 VTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVR 299
            +L W+            + +    +         ET      + +  L P+ +Y  RVR
Sbjct: 336 YSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVR 395

Query: 300 AVNKQGK--------SEPLTTT 313
               +          SE  +  
Sbjct: 396 VRTSRTGYNGIWSEWSEARSWD 417

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 54.2 bits (129), Expect = 8e-08
 Identities = 31/210 (14%), Positives = 62/210 (29%), Gaps = 13/210 (6%)

Query: 211 DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQP------IEKYVVDKMD 264
             + V +    +P  P   L++S    +   L W V              +E  VV K  
Sbjct: 97  TRLTVTLTQHVQPPEPRD-LQISTD-QDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRL 154

Query: 265 EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKS---EPLTTTASIEAKNP 321
           + +        +      L  E L+P+  Y  RVR     G      P   +  +   + 
Sbjct: 155 QDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQ 214

Query: 322 FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT 381
                +P   E        +  +W   ++   S  V + +  K           + E  +
Sbjct: 215 PGDEAQPQNLECFFDGAAVLSCSWEVRKEVASS--VSFGLFYKPSPDAGSAVLLREEECS 272

Query: 382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
           P  +        ++  ++   +    G+  
Sbjct: 273 PVLREGLGSLHTRHHCQIPVPDPATHGQYI 302

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 49.2 bits (116), Expect = 3e-06
 Identities = 38/327 (11%), Positives = 90/327 (27%), Gaps = 41/327 (12%)

Query: 286 EGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAW 345
             +IP   +              PL T  ++       QP +P   +I      F+ L W
Sbjct: 71  RCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHV-QPPEPRDLQISTDQDHFL-LTW 128

Query: 346 TPP-EQNGGSPIVGYIIEKKEKYSPIWEKCAQ-----TEGDTPKGKVLDLIEGNQYEFRV 399
           +          +    +E +  Y  + +         +           L+  + Y  RV
Sbjct: 129 SVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARV 188

Query: 400 LAVNKGGPGEPSDPTAP-----------HIARAKKVSPYINRDQLSDIKVRAGSNFEFDI 448
                 G      P+               A+ + +  + +   +              +
Sbjct: 189 RTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSV 248

Query: 449 N------VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK 502
           +         +          + + + ++    ++     ++ V D      G Y ++V+
Sbjct: 249 SFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPA--THGQYIVSVQ 306

Query: 503 NSWGTDKGTA-----------KVTVLG--CSLKWNPPEDDGGAPIEYYMVE-KMETDTGK 548
                    +           +VT  G   SL+W   +         + ++ + +T T K
Sbjct: 307 PRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWK 366

Query: 549 VLIKWIRTNDKRVTIDNVDYFTKITIR 575
                   N   + +  ++  T+   R
Sbjct: 367 DSKTETLQNAHSMALPALEPSTRYWAR 393

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 48.8 bits (115), Expect = 4e-06
 Identities = 20/191 (10%), Positives = 53/191 (27%), Gaps = 7/191 (3%)

Query: 237 AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKF 296
           A  ++  W+V  +        + +                E     L       + ++  
Sbjct: 231 AAVLSCSWEVRKEVASSVS--FGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHC 288

Query: 297 RVRAVNKQGKSEPLTTTASIEAKNPFNQPG--KPGTPEIK-DFDTDFVELAWTPPEQNGG 353
           ++   +     + + +     A+         +   P ++   D D   L W   +    
Sbjct: 289 QIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYE 348

Query: 354 SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA--VNKGGPGEPS 411
                + I+ ++  +   +   +T  +     +  L    +Y  RV       G  G  S
Sbjct: 349 HIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWS 408

Query: 412 DPTAPHIARAK 422
           + +       +
Sbjct: 409 EWSEARSWDTE 419

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 24/190 (12%)

Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVF 487
           R+ +S  + + G + E    V   P P   WL ++  +T IS +RF ++ ++    L++ 
Sbjct: 6   REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQIL 62

Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPE-DDGGAPIEYYMVEKMETD- 545
           +  + D GIY    +     +     + V+       PP                 E   
Sbjct: 63  NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV----PPAISMPQKSFNATAERGEEMTF 118

Query: 546 ----TG--KVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 594
               +G  +  I W R       +++  +   +  T++T+R +  SD   Y   ATN  G
Sbjct: 119 SCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAG 176

Query: 595 KDQVFIEVVV 604
           +D+    + V
Sbjct: 177 EDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 424 VSPYINRDQ-LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
           V P I+  Q   +     G    F     G P P   W  N   I   +++ +   +   
Sbjct: 95  VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE- 153

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
            L V +    D G Y     N  G D+  A + V 
Sbjct: 154 -LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 41/171 (23%)

Query: 551 IKWIRTNDKRVTIDNVDYFTK-----ITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVV 603
           + W+  +++ VT  + + F       + I  + +SD   Y          +  F  I V+
Sbjct: 34  VSWLY-HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 92

Query: 604 VTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLE----------------SQ 647
           V   P+     I       + T E              ++                   +
Sbjct: 93  VNVPPA-----ISMPQKSFNATAERG----------EEMTFSCRASGSPEPAISWFRNGK 137

Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
            +  +++  +   +  T++T+R +  SD   Y   ATN  G+D+    + V
Sbjct: 138 LIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
            K      NT+L VR    +D G Y   A N  G+D  +  + V 
Sbjct: 143 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 2/97 (2%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            S P   L+V +     + + W          ++ Y +   +             G  + 
Sbjct: 8   SSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYST 65

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
             + GL P   Y   V A +         +  SI  +
Sbjct: 66  ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 1/91 (1%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
              P   E+ D     ++++W     +    +  Y I   E       +     G     
Sbjct: 8   SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYSTA 66

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            +  L  G  Y   V A +   PG   +   
Sbjct: 67  TISGLKPGVDYTITVYAYDTFFPGYEPNSPI 97

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP---E 111
              P  LEV +       + W+         ++ Y +  Y    G       T       
Sbjct: 8   SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRIT-YGETGGDSPVQEFTVPGYYST 65

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
             ++GL PG +Y   V A +         +  SI  R
Sbjct: 66  ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
            L D  V  G + E    +     P   WL +   I    ++ +V +     L +  +  
Sbjct: 14  PLEDQWVAPGEDVELRCELSRAGTPVH-WLKDRKAIRKSQKYDVVCEGTMAMLVIRGASL 72

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            D+G YT  V+      K TA + V
Sbjct: 73  KDAGEYTCEVEA----SKSTASLHV 93

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 65.3 bits (159), Expect = 4e-12
 Identities = 27/226 (11%), Positives = 61/226 (26%), Gaps = 34/226 (15%)

Query: 405 GGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND 464
           G        ++  + R       I         V AG   +      G P    +W   +
Sbjct: 2   GSSHHHHHHSSGLVPRG----SKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMN 56

Query: 465 ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLG--CSL 521
             I + +         +++L        D+G Y   V N++  +    +++ V     S 
Sbjct: 57  KEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESF 107

Query: 522 KWNPPEDDGGAPIEYYMVEKMETDTGKVL-------------IKWIRTNDKRVTIDNVDY 568
           + +                  +   G  L              +W + N+  +T +    
Sbjct: 108 QRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHETKKL 166

Query: 569 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
           +    +  +       Y     N +         ++ D+ +    P
Sbjct: 167 YM---VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHP 209

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 10/120 (8%)

Query: 409 EPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII 468
           +  +     +    +    I   + +  K+  GS        +G PIP  +W  N++ + 
Sbjct: 102 DIPESFQRSVDGVSESKLQICV-EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT 160

Query: 469 SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPED 528
            + +             V        G Y   V N   +        ++        P++
Sbjct: 161 HETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDN 211

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 17/170 (10%), Positives = 50/170 (29%), Gaps = 22/170 (12%)

Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDKPS 609
            +W +  +K +   N    +++    +   D   Y     N+   +   + ++ V D P 
Sbjct: 50  YQWFK-MNKEIPNGNT---SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPE 105

Query: 610 APEGPIQWLLTLTDVTWEISNYLQELHSSL-MPISLESQY----------LMNDKRVTID 658
           + +  +     +++   +I              + L+               N+  +T +
Sbjct: 106 SFQRSVD---GVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE 162

Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
               +    +  +       Y     N +         ++ D+ +    P
Sbjct: 163 TKKLYM---VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHP 209

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P +      +      V L W  PEQ  G  I+ Y I+  EK     +  +  +  T + 
Sbjct: 11  PSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEK-DKEMQSYSTLKAVTTRA 68

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            V  L  G +Y F+V A    G G  S   
Sbjct: 69  TVSGLKPGTRYVFQVRARTSAGCGRFSQAM 98

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
             PS     ++        V+L W+ P+   G  I +Y + K  E           +   
Sbjct: 9   AAPSQVVV-IRQERAGQTSVSLLWQEPEQPNG-IILEYEI-KYYEKDKEMQSYSTLKAVT 65

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
           T   V GL P  +Y F+VRA    G    S+ +   
Sbjct: 66  TRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVE 101

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIP-VGKTREPEMDVTGLTPGHEYKFRVKAL 130
           +L W +P+   G  +  Y ++ Y+ +  +      K       V+GL PG  Y F+V+A 
Sbjct: 28  SLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRAR 86

Query: 131 NKEGESEPLETFS 143
              G     +   
Sbjct: 87  TSAGCGRFSQAME 99

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 34/207 (16%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTK-LKVFDS 489
           +  +  VR G    F     G+P P+  W  N   +  ++ R+ ++        L++   
Sbjct: 12  KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 71

Query: 490 KRG-DSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTG 547
           + G D   Y    +N  G      A +T+          +   G P+   + +   T   
Sbjct: 72  RAGRDDAPYECVAENGVGDAVSADATLTIYE------GDKTPAGFPV---ITQGPGTRVI 122

Query: 548 KV----------------LIKWIRTNDKRVTIDNVDYFTK---ITIRPLQRSDTAQYTVT 588
           +V                 I WI+ N  +V + N  Y  K   + I   +  D  +Y   
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181

Query: 589 ATNSQGKDQVF-IEVVVTDKPSAPEGP 614
           A NS G +      + V  +    +  
Sbjct: 182 AENSMGTEHSKATNLYVKVRRVGTKHH 208

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
           P I         +  G         IG P P   W+ N   +   +    + D     L+
Sbjct: 111 PVI-TQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQ 166

Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKGTA-KVTVL 517
           + +S+  D G Y    +NS GT+   A  + V 
Sbjct: 167 IENSREEDQGKYECVAENSMGTEHSKATNLYVK 199

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 26/191 (13%), Positives = 44/191 (23%), Gaps = 53/191 (27%)

Query: 551 IKW------IRTNDKRVTI---DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFI 600
           I W      +     R T+          +I        D A Y   A N  G       
Sbjct: 38  IVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAG-RDDAPYECVAENGVGDAVSADA 96

Query: 601 EVVVTDKPSAPEGPIQWLLTLTD----------------------VTWEISNYLQELHSS 638
            + + +    P G                                + W  +    ++  S
Sbjct: 97  TLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQ--TKVDMS 154

Query: 639 LMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF-IEVV 697
               SL+  +L                  I   +  D  +Y   A NS G +      + 
Sbjct: 155 NPRYSLKDGFLQ-----------------IENSREEDQGKYECVAENSMGTEHSKATNLY 197

Query: 698 VTDKPSAPEGP 708
           V  +    +  
Sbjct: 198 VKVRRVGTKHH 208

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 9/144 (6%)

Query: 401 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 460
            +N                    V PY  +  + D++V  GS   FD  V G P P   W
Sbjct: 17  PINANKVENEDAFLEEVAEEKPHVKPYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMW 75

Query: 461 LCNDITIISKDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGC 519
             +D  +     F+I  D++    L + +    D   YT    NS G    TA++ V   
Sbjct: 76  FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV--- 132

Query: 520 SLKWNPPEDDGGAPIEYYMVEKME 543
                    +G    E    E+ E
Sbjct: 133 ----ETMGKEGEGEGEGEEDEEEE 152

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W      ++ +       + +    +TI  +   D A+YT  A NS G+     E++V
Sbjct: 73  VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132

Query: 605 TDKPSAPEGPIQ 616
                  EG  +
Sbjct: 133 ETMGKEGEGEGE 144

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQI 711
           TI  +   D A+YT  A NS G+     E++V       EG  + 
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEG 145

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 61.5 bits (150), Expect = 5e-12
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSK 490
           ++    V  GS+  F + V+G+P P  EW  N + I   DR      +D   +L + D  
Sbjct: 11  RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVT 70

Query: 491 RGDSGIYTLAVKNSWGTDKGTAKVTV 516
             DS    +   N  G     A + V
Sbjct: 71  GEDSASIMVKAINIAGETSSHAFLLV 96

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
            L+D  V  G        +         W  N + +   DR K+V   +  KL + ++  
Sbjct: 13  PLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALT 70

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVL 517
            D G Y  A           AKV V+
Sbjct: 71  EDEGDYVFAPDA--YNVTLPAKVHVI 94

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 62.0 bits (151), Expect = 6e-12
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 417 HIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKI 475
           H +   K +P     +    KV  G + + +  +   P P   W  N+  +  + DR  +
Sbjct: 7   HHSHEHKRAPMFIY-KPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISL 65

Query: 476 V-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
             ++     L + D  + D+G YT++  N  G      ++ V  
Sbjct: 66  YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 551 IKW------IRTNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
           + W      ++ N  R+++  +      + I+ + + D   YTV+A N  G       + 
Sbjct: 47  LFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106

Query: 604 VTDKPS 609
           VT +P+
Sbjct: 107 VTARPN 112

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 650 MNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
            N  R+++  +      + I+ + + D   YTV+A N  G       + VT +P+
Sbjct: 58  FNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 66.4 bits (161), Expect = 6e-12
 Identities = 40/305 (13%), Positives = 97/305 (31%), Gaps = 41/305 (13%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTK---EWLCNDITIISKDRFKIVNDD 479
           ++  ++  Q +     AG  F     V G EP+P+     W  +D             ++
Sbjct: 1   MAFTVSI-QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------EN 49

Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLK---WNPPEDD---GGAP 533
            +  L V D+   ++G Y + V+++       ++V ++  +        P+         
Sbjct: 50  NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTD 109

Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 593
           +E +   K            +  +  +   D +D    ITI+         YTV      
Sbjct: 110 VELHATVKFSGGKTPADNYELHYSWSKGE-DVIDTTQDITIQEFTADKNGVYTVKVWGES 168

Query: 594 GKDQVFIEVVVTDKPSAPEGPIQWLLTLT-----DVTWEISNYLQELHSSLMPISLESQY 648
                     +       +  +    T+       + + +S  +    S +  ++++  +
Sbjct: 169 EDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNW 228

Query: 649 LMNDKRVTI---------DNVDYFT-----KITIRPLQRSDTAQYTVTATNSQGKDQVFI 694
            +  +             + ++ F+      +        DTA++   A   Q  +   +
Sbjct: 229 YLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETV 288

Query: 695 EVVVT 699
           EV  +
Sbjct: 289 EVAAS 293

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 12/174 (6%)

Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP---GGPLKVSNVHAEGV 240
              L V  A   +AG Y VT ++ +   SVE EV ++++         P          V
Sbjct: 51  TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDV 110

Query: 241 TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
            L   V    G  P          E    W+   +       + ++    +    + V+ 
Sbjct: 111 ELHATVKFSGGKTP------ADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKV 164

Query: 301 VNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGS 354
             +   S     +AS +         +           + + L +   E   G 
Sbjct: 165 WGESEDS---AASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGD 215

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 5/140 (3%)

Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE--GPIQWLLTLTDVTWEIS 629
           +T+      +   Y VT  ++     V  EV + ++          Q     +    E+ 
Sbjct: 54  LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELH 113

Query: 630 NYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK 689
             ++         + E  Y  +     ID       ITI+         YTV        
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDVIDTT---QDITIQEFTADKNGVYTVKVWGESED 170

Query: 690 DQVFIEVVVTDKPSAPEGPI 709
                   +       +  +
Sbjct: 171 SAASASTKIMLATMNVDQDV 190

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 66.9 bits (163), Expect = 7e-12
 Identities = 30/299 (10%), Positives = 82/299 (27%), Gaps = 52/299 (17%)

Query: 432 QLSDIKVRAGSNFEFDINV---IGEPIPTKEWLCNDITII-----SKDRFKIVNDDKSTK 483
            ++   V  G++      +   + + +    W  ++            ++ +     S +
Sbjct: 109 DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV---LPSGE 165

Query: 484 LKVFDSKRGDS-GIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
           L + +    D    Y    K+      G  +++     L    P           + + +
Sbjct: 166 LHIREVGPEDGYKSYQCRTKHRLT---GETRLSATKGRLVITEPISSSAPRTPALVQKPL 222

Query: 543 ETDTGKVL-------------IKWIRTNDKRVTIDNVDYFTKI-------TIRPLQRSDT 582
           E      +              +W +  +       V    ++        I+     D+
Sbjct: 223 ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 282

Query: 583 AQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSL 639
            +Y     NS G + V   + VT             +     T +         +   + 
Sbjct: 283 GKYLCVVNNSVGGESVETVLTVTAPL-------SAKIDPPTQTVDFGRPAVFTCQYTGNP 335

Query: 640 MPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
           +       ++ + K +        + + I  +++ D   Y     N +   +   E+ +
Sbjct: 336 IK---TVSWMKDGKAIGHSE----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 60.3 bits (146), Expect = 9e-10
 Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 30/224 (13%)

Query: 396 EFRVLAVNKGGPGEPSDPTAPHIARAKKVS---PYINRDQLSDIKVRAGSNFEFDINVIG 452
            ++    ++         T   +   + +S   P         +++             G
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238

Query: 453 EPIPTKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510
            P P+  W         K    + +     S  L + D+   DSG Y   V NS G +  
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298

Query: 511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV----------LIKWIRTNDKR 560
              +TV        P      A I+                         + W++ + K 
Sbjct: 299 ETVLTVTA------PLS----AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKA 347

Query: 561 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           +        + + I  +++ D   Y     N +   +   E+ +
Sbjct: 348 IGHSE----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 55/378 (14%), Positives = 99/378 (26%), Gaps = 57/378 (15%)

Query: 159 SLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEV 217
                 R     G  +    +  DY         Q   A  Y   A N  G   S +V V
Sbjct: 47  GDVPGLRQISSDGKLVFPPFRAEDYR--------QEVHAQVYACLARNQFGSIISRDVHV 98

Query: 218 IVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277
             +          K   +      +   +P           VV    +    + P  E +
Sbjct: 99  RAVVAQYYEADVNKEHVIRGNSAVIKCLIP---SFVADFVEVVSWHTDEEENYFPGAEYD 155

Query: 278 GPVT-----GLEVEGLIPNHKY-KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP 331
           G         L +  + P   Y  ++ R  ++      L+ T              P TP
Sbjct: 156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP 215

Query: 332 EIKDFDTDFVE--------LAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
            +     + +          A        G P   +   K  + +   +     +     
Sbjct: 216 ALVQKPLELMVAHTISLLCPA-------QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV 268

Query: 384 GKVLDLIEGNQYE----FRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKV 438
              L +I+    E    +  +  N  G                        +       V
Sbjct: 269 SGTL-IIKDAVVEDSGKYLCVVNNSVG-------GESVETVLTVTAPLSA-KIDPPTQTV 319

Query: 439 RAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT 498
             G    F     G PI T  W+ +   I   +            L++   K+ D G+Y 
Sbjct: 320 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQ 369

Query: 499 LAVKNSWGTDKGTAKVTV 516
             V+N   + + +A++ +
Sbjct: 370 CFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 57.6 bits (139), Expect = 6e-09
 Identities = 42/335 (12%), Positives = 92/335 (27%), Gaps = 70/335 (20%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKS 481
           +  P   ++  + I     +  E +    G P+P   W+ +D T +      + ++ D  
Sbjct: 1   QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60

Query: 482 ---TKLKVFDSKR-GDSGIYTLAVKNSWGTDK-GTAKVTV----------------LGCS 520
                 +  D ++   + +Y    +N +G+       V                   G S
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 120

Query: 521 --LKWNPPEDDGGAPIEYY-MVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPL 577
             +K   P              +       +         D +  +       ++ IR +
Sbjct: 121 AVIKCLIPSFVADFVEVVSWHTD------EEENYFPGAEYDGKYLVLPS---GELHIREV 171

Query: 578 QRSDT-AQYTVTATNSQGKDQV---FIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ 633
              D    Y     +    +         +V  +P +   P    L    +         
Sbjct: 172 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE-------L 224

Query: 634 ELHSSLM--------------------PISLESQYLMNDKRVTIDNVDYFTKITIRPLQR 673
            +  ++                       + +   ++ND+   +        + I+    
Sbjct: 225 MVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT-----LIIKDAVV 279

Query: 674 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
            D+ +Y     NS G + V   + VT   SA   P
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP 314

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 61.9 bits (150), Expect = 1e-11
 Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 16/136 (11%)

Query: 208 NGKDSVEVEV-IVLDKPSPPGGPLKVSNVHAEGVTLDWKVP--------DDDGGQPIEKY 258
           +   S + E        S    P   S++ A  V L W  P        D+     +  Y
Sbjct: 2   SSGSSGDEETKAFEALLSNIVKP-VASDIQARTVVLTWSPPSSLINGETDESSVPELYGY 60

Query: 259 VVDKMDEAT-GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE 317
            V        G++       G  T + +  L P   Y  +V+A     K  P   + +  
Sbjct: 61  EVLISSTGKDGKYKS--VYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTP---SEAEI 115

Query: 318 AKNPFNQPGKPGTPEI 333
                 +P  P  P I
Sbjct: 116 FTTLSCEPDIPNPPRI 131

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 60.4 bits (146), Expect = 4e-11
 Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 9/111 (8%)

Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGS--------PIVGYIIEK 363
           ++   E K           P   D     V L W+PP               + GY +  
Sbjct: 5   SSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLI 64

Query: 364 KEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
                    K     G+     + DL     Y  +V A      G PS+  
Sbjct: 65  SSTGKDGKYKSVYV-GEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAE 114

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 57.7 bits (139), Expect = 3e-10
 Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 9/98 (9%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGG--------EPLEGYLVEKYDP-ETGVWIPVG 105
           L        S+I      L W+ P               L GY V      + G +  V 
Sbjct: 18  LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVY 77

Query: 106 KTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFS 143
              E  + +  L P  +Y  +V+A     +  P E   
Sbjct: 78  VGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEI 115

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 39/198 (19%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITIISKDRFKIV---NDDKSTKLKVF 487
             S  ++  G +  F   V G+       W   +   +S ++ +I    NDD S+ L ++
Sbjct: 8   VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67

Query: 488 DSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLGCSLKWNPPED----DG----------GA 532
           ++   D+GIY   V    GT  + T  V +    +  N P      +G           +
Sbjct: 68  NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127

Query: 533 PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKI-----TIRPLQRSDTAQYTV 587
                             I W     + V +     F  +      IR ++++D   Y  
Sbjct: 128 L--------------PPTIIWKH-KGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172

Query: 588 TATNSQGKDQVFIEVVVT 605
                   +  F ++ V 
Sbjct: 173 EGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDK 480
                  ++  +  + + G +     +V+    PT  W      + +    RF ++++  
Sbjct: 98  FQKLMF-KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-- 154

Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
              L++   K+ D G Y    +     +     + V+
Sbjct: 155 -NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 23/164 (14%)

Query: 551 IKWIRTN-------DKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKDQ-VFIE 601
           I W   N        +R+++   D  +  +TI      D   Y    T   G      + 
Sbjct: 35  ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVN 94

Query: 602 VVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ-ELHSSLMPISLESQYLMNDKRVTIDNV 660
           V +  K      P        +        +  ++ SSL P      +    + V +   
Sbjct: 95  VKIFQKLMFKNAPTP-----QEFKEGEDAVIVCDVVSSLPP---TIIWKHKGRDVILKKD 146

Query: 661 DYFTKI-----TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
             F  +      IR ++++D   Y          +  F ++ V 
Sbjct: 147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
           +V+P  +   L D  V  G +F    +V G P+P   WL N    I   R          
Sbjct: 9   EVAPSFSS-VLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQ-PIQYARSTCEAGVAE- 65

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            L + D+   D G YT   +N+ G    +A VTV
Sbjct: 66  -LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 338 TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE--KCAQTEGDTPKGKVLDLIEGNQY 395
              V ++W PP +  G  I  YI+      +   +        GD    +++DL     Y
Sbjct: 24  PRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMY 82

Query: 396 EFRVLAVNKGGPGEPSDP 413
            FR+ A N  G G  SDP
Sbjct: 83  YFRIQARNSKGVGPLSDP 100

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 223 PSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV---DKMDEATGRWTPAGETEG 278
            S P    +         V + W+ P +  G  I  Y++      +     W       G
Sbjct: 9   TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIME-TISG 66

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
                ++  L  +  Y FR++A N +G    
Sbjct: 67  DRLTHQIMDLNLDTMYYFRIQARNSKGVGPL 97

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 72  TLKWNKPKDDGGEPLEGYLVE---KYDPETGVWIPVG-KTREPEMDVTGLTPGHEYKFRV 127
            + W  P +  G  +  Y++      +     WI            +  L     Y FR+
Sbjct: 28  IVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRI 86

Query: 128 KALNKEGESEP 138
           +A N +G    
Sbjct: 87  QARNSKGVGPL 97

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 4/100 (4%)

Query: 217 VIVLDKPSPPGGPLKVS-NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE 275
              LD+   P  P  +        + + W  P +     +  Y++     +    T    
Sbjct: 9   ENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNI-VVRGYIIGYGVGSPYAET--VR 65

Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
            +       +E L  +  Y   ++A N  G+  PL  +A+
Sbjct: 66  VDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESAT 105

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P +P +  ++   T+ + ++WTPP       + GYII      SP  E   + +      
Sbjct: 18  PDQPSSLHVRP-QTNCIIMSWTPPLNPNI-VVRGYIIGYGVG-SPYAET-VRVDSKQRYY 73

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            +  L   + Y   + A N  G G P   +A
Sbjct: 74  SIERLESSSHYVISLKAFNNAGEGVPLYESA 104

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131
            + W  P +     + GY++               +++    +  L     Y   +KA N
Sbjct: 34  IMSWTPPLNPNI-VVRGYIIGYGVGSPYAETVRVDSKQRYYSIERLESSSHYVISLKAFN 92

Query: 132 KEGESEPLET 141
             GE  PL  
Sbjct: 93  NAGEGVPLYE 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-----VN 477
             +P I   +       +  ++     V G P P  +W  N   +              +
Sbjct: 2   HFAPTITFLE----SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 478 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
            +    L++ +    ++G YTL  KN +G D+       +G
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
           H +Y+  L +      + G YT+ A+N  GKD  ++    +  P
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 13/62 (20%), Positives = 23/62 (37%)

Query: 547 GKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
           G +L +      K    ++ +Y   + +      +   YT+ A N  GKD+  I      
Sbjct: 39  GAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

Query: 607 KP 608
            P
Sbjct: 99  WP 100

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 640 MPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
             ++         K    ++ +Y   + +      +   YT+ A N  GKD+  I     
Sbjct: 40  AILNESKYICT--KIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97

Query: 700 DKP 702
             P
Sbjct: 98  GWP 100

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 42/208 (20%), Positives = 63/208 (30%), Gaps = 40/208 (19%)

Query: 419 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKIVN 477
           A     +P I    L  +         F   V   P P   W  N I I   D R+ I  
Sbjct: 1   AEKLPKAPVI-TTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE 59

Query: 478 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLGCSLKWNPPEDDGGAPIEY 536
           +     L +   +  D GIY     N  G   +    + V         P+      I  
Sbjct: 60  NG--QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM------KPK------ITR 105

Query: 537 YMVEKMETDTGKVL------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQR 579
             +     +  K +            + WI+       + R+ +        + I  +Q+
Sbjct: 106 PPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQK 162

Query: 580 SDTAQYTVTATNSQGKDQ---VFIEVVV 604
            D  QY   A NS G      V +EV V
Sbjct: 163 EDAGQYRCVAKNSLGTAYSKLVKLEVEV 190

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 36/172 (20%), Positives = 53/172 (30%), Gaps = 44/172 (25%)

Query: 551 IKWIRTNDKRVTIDNVDYF-----TKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVV 604
           I W R N   + + +  Y        +TI  ++ SD   Y  TA N  G   +    + V
Sbjct: 39  ISWTR-NKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQV 97

Query: 605 TDKPSAPEGPIQWLLTLTD---------------VTWEISNYLQELHSSLMPISLESQYL 649
             KP     PI   +                   V+W                      L
Sbjct: 98  KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW----------------IKGDSAL 141

Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ---VFIEVVV 698
             + R+ +        + I  +Q+ D  QY   A NS G      V +EV V
Sbjct: 142 RENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
            L D++V  G        +     P K W   +  +   D++ +  +    +L V + + 
Sbjct: 14  ALKDLEVLEGGAATLRCVLSSVAAPVK-WCYGNNVLRPGDKYSLRQEGAMLELVVRNLRP 72

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            DSG Y+ +     G    +A +TV
Sbjct: 73  QDSGRYSCSF----GDQTTSATLTV 93

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 44/207 (21%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDK 480
           +  P I       I   +        N+           W  N + + +  +     +  
Sbjct: 1   QNEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-----NAS 54

Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
           + + ++   +  DSG Y   V +     K  A + V         P+      I  +   
Sbjct: 55  NMEYRINKPRAEDSGEYH-CVYHFVSAPKANATIEVKA------APD------ITGHKRS 101

Query: 541 KMETDTGKVL------------IKWIR----------TNDKRVTIDNVDYFTKITIRPLQ 578
           + + +    +              W +           +  R  I N + +T++ I  LQ
Sbjct: 102 ENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQ 161

Query: 579 -RSDTAQYTVTATNSQGKDQVFIEVVV 604
              D  +Y   ATNS G   V   + V
Sbjct: 162 ITEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 27/168 (16%), Positives = 47/168 (27%), Gaps = 36/168 (21%)

Query: 551 IKWIRTNDKRVTIDNVDYFTKI-TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 609
             W + N   +T    +       I   +  D+ +Y     +     +    + V   P 
Sbjct: 37  SYWTK-NGVELTATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPD 94

Query: 610 ---------APEGPIQWLLTLT---------DVTWEISNYLQELHSSLMPISLESQYLMN 651
                      EG       +          +  W                 +  +   +
Sbjct: 95  ITGHKRSENKNEGQD---AMMYCKSVGYPHPEWMWRKKEN-----------GVFEEISNS 140

Query: 652 DKRVTIDNVDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQVFIEVVV 698
             R  I N + +T++ I  LQ   D  +Y   ATNS G   V   + V
Sbjct: 141 SGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 5/86 (5%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSK 490
            L D+ V+ GS+  F   +         W  +   + + +  +I         L +    
Sbjct: 19  DLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLA 78

Query: 491 RGDSGIYTLAVKNSWGTDKGTAKVTV 516
             DSG          G  + +A + V
Sbjct: 79  LKDSGTIYFEA----GDQRASAALRV 100

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 432 QLSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 490
           +L  ++V  G +  F+  +          W     T+ S  RF+     +   L V ++ 
Sbjct: 14  RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAA 73

Query: 491 RGDSGIYTLAVKNSWGTDKGTAKVTV 516
             D+G    +V+         A + V
Sbjct: 74  PSDAGEVVFSVRG----LTSKASLIV 95

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
            ++D+ V+A     F   V  E +  K W  N + +    R  I +  +  KL + D + 
Sbjct: 14  DIADLTVKAAEQAVFKCEVSDEKVTGK-WYKNGVEVRPSKRITISHVGRFHKLVIDDVRP 72

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVL 517
            D G YT        +   +AK+  L
Sbjct: 73  EDEGDYTFVPDGYALS--LSAKLNFL 96

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 27/113 (23%), Positives = 34/113 (30%), Gaps = 13/113 (11%)

Query: 408 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 467
           G      AP               +L   K+  G    F   V G P P   W  +   I
Sbjct: 1   GSSGSSGAPFFEM-----------KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 49

Query: 468 I-SKDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
               D + I  D   T  L    S   D G YT+   N  G    T ++ V  
Sbjct: 50  SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 551 IKW------IRTNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
           I W      I       TI  ++D    +        D   YT+ A N QG+      ++
Sbjct: 40  IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99

Query: 604 VTDKPSAP 611
           V    S P
Sbjct: 100 VQAVNSGP 107

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
           +D      ++D    +        D   YT+ A N QG+      ++V    S P
Sbjct: 53  SDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPG 227
           L    +   D G YT+ A N  G+ S    ++V    S P 
Sbjct: 68  LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPS 108

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 59.0 bits (143), Expect = 5e-11
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
               P   L+   V      L W  P          Y++       G+        G +T
Sbjct: 7   GLEAPRD-LEAKEVTPRTALLTWTEPPV----RPAGYLL-SFHTPGGQTQEI-LLPGGIT 59

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS-IEAKNPFNQPG 326
             ++ GL P+  Y  R++A+  Q    P++T+ +    +      G
Sbjct: 60  SHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRISGPSSG 105

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 54  GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD 113
           GL+    LE   +      L W +P         GYL+  + P       +         
Sbjct: 7   GLEAPRDLEAKEVTPRTALLTWTEPPV----RPAGYLLSFHTPGGQTQEILLPGGITSHQ 62

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
           + GL P   Y  R++A+  +    P+ T
Sbjct: 63  LLGLFPSTSYNARLQAMWGQSLLPPVST 90

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 47.1 bits (112), Expect = 8e-07
 Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 6/87 (6%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
              P   E K+       L WT P         GY++          E      G     
Sbjct: 8   LEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQE--ILLPGGITSH 61

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPS 411
           ++L L     Y  R+ A+       P 
Sbjct: 62  QLLGLFPSTSYNARLQAMWGQSLLPPV 88

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 408 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 467
           G       P I +              +  V     F       G P+PT  W  + + +
Sbjct: 1   GSSGSSGPPVIRQ-----------GPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLV 49

Query: 468 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPE 527
            ++D      ++    L++  +K GD+G YT       G    +A + V    +   PP 
Sbjct: 50  STQDSRIKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPR 107

Query: 528 D 528
            
Sbjct: 108 P 108

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
           N  L +R A+  D G YT  A   +G+ +    + V +   P   P
Sbjct: 61  NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPP 106

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 16/109 (14%)

Query: 408 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 467
           G      A                +L++++V       F       P  T  W    + +
Sbjct: 1   GSSGSSGANCFTE-----------ELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLEL 48

Query: 468 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            +  + +   +  + +L +   ++ DS  YT  +    G  +  A++ V
Sbjct: 49  RASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLV 93

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 62.8 bits (152), Expect = 8e-11
 Identities = 40/292 (13%), Positives = 87/292 (29%), Gaps = 56/292 (19%)

Query: 452 GEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 509
            E   T  W  +D    + ++   +I    +   L    +K  DSG Y   V+NS    +
Sbjct: 32  NEHKGTITWYKDDSKTPVSTEQASRIHQHKEK--LWFVPAKVEDSGHYYCVVRNSSYCLR 89

Query: 510 GTAKVTVLGCSLKWNPPEDD--------GG------APIEYYMVEKMETDTGKVLIKWIR 555
                  +                     G        +E++  E  E       ++W  
Sbjct: 90  IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK----LQW-Y 144

Query: 556 TNDKRVTIDNVDYF---TKITIRPLQRSDTAQYTVTATNSQGKDQ------VFIEVVVTD 606
            + K + +DN+ +     ++ +  +       YT  A+ +    Q      +    +  +
Sbjct: 145 KDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 204

Query: 607 KPSAPE--GPIQWLLTLT-----------------DVTWEISNYLQELHSSLMPISLESQ 647
           KP+ P    P    + +                     W+ +     +      +  +  
Sbjct: 205 KPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNG--SVIDEDDPVLGEDYY 262

Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTA-QYTVTATNSQGKDQVFIEVVV 698
            + N            T + I  ++       +T  A N+ G D  +I+++ 
Sbjct: 263 SVENP--ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 23/176 (13%), Positives = 56/176 (31%), Gaps = 23/176 (13%)

Query: 551 IKWIRTNDKRVTIDNVDYFTKIT-------IRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
           I W + +D +  + + +  ++I          P +  D+  Y     NS    ++ I   
Sbjct: 38  ITWYK-DDSKTPV-STEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 95

Query: 604 VTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPIS----LESQYLMNDKRVTIDN 659
             +         Q  +    +       L   +            + Q+  + K + +DN
Sbjct: 96  FVENEPNLCYNAQ-AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN 154

Query: 660 VDYF---TKITIRPLQRSDTAQYTVTATNSQGKDQ------VFIEVVVTDKPSAPE 706
           + +     ++ +  +       YT  A+ +    Q      +    +  +KP+ P 
Sbjct: 155 IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPV 210

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 47.8 bits (113), Expect = 6e-06
 Identities = 27/215 (12%), Positives = 54/215 (25%), Gaps = 45/215 (20%)

Query: 428 INRDQLSDIKVRAGSNFEF------DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 481
            N   +   K+    +                 +P  +W  +   ++  +       D+ 
Sbjct: 105 YNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR- 163

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
             L V +      G YT     ++   +      +                 I     E 
Sbjct: 164 --LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI---EFITLEENKPTRPVIVSPANET 218

Query: 542 METDTGKVL-------------IKWIRTNDKRVTIDN------------------VDYFT 570
           ME D G  +               W   N   +  D+                      T
Sbjct: 219 MEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDEDDPVLGEDYYSVENPANKRRSTLIT 277

Query: 571 KITIRPLQRSDTA-QYTVTATNSQGKDQVFIEVVV 604
            + I  ++       +T  A N+ G D  +I+++ 
Sbjct: 278 VLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 13/112 (11%)

Query: 418 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN 477
           +   K   P I       ++V  GS  +   NV G+      W  N   I   D     +
Sbjct: 201 LEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGED 260

Query: 478 ------------DDKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTV 516
                           T L + + +       +T   KN+ G D    ++  
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 63.8 bits (154), Expect = 8e-11
 Identities = 41/225 (18%), Positives = 65/225 (28%), Gaps = 19/225 (8%)

Query: 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVS--NVHAEGVTLDWKVPDDDG--GQPIE 256
             +  NI      +V   V+    PP  P K+S      + +   W      G  G    
Sbjct: 262 ENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNT 321

Query: 257 KYVVDKMDEATGRWT-PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK--SEPLTTT 313
           +Y + +                     L V+       + F +   N  G+  S  +   
Sbjct: 322 EYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINV 381

Query: 314 ASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
               A +       P + ++KD ++  V  +W  P  N     +   IE  +  S    +
Sbjct: 382 TERVAPHD------PTSLKVKDINSTVVTFSWYLPG-NFTKINLLCQIEICKANSKKEVR 434

Query: 374 CAQ---TEGDTPKGKVLDLIEGNQYEFRVLAV--NKGGPGEPSDP 413
            A     E  T    V  L     Y FRV             SD 
Sbjct: 435 NATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSRWSDE 479

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 52.3 bits (124), Expect = 3e-07
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 12/124 (9%)

Query: 200 YTVTAENINGKDSVEVEVIVLD--KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE- 256
           +T+T  N  G+    V + V +   P  P   LKV ++++  VT  W +P +     +  
Sbjct: 362 FTLTGRNPLGQAQSAVVINVTERVAPHDPTS-LKVKDINSTVVTFSWYLPGNFTKINLLC 420

Query: 257 --KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA-VNKQGK----SEP 309
             +       +     T  G  E     + V+ L P   Y FRVR       K    S+ 
Sbjct: 421 QIEICKANSKKEVRNATIRG-AEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSRWSDE 479

Query: 310 LTTT 313
               
Sbjct: 480 KRHL 483

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 44.9 bits (105), Expect = 7e-05
 Identities = 52/414 (12%), Positives = 103/414 (24%), Gaps = 52/414 (12%)

Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
           +       +    +    +  W  P       +    I+ +       E           
Sbjct: 3   KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETT--------N 54

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSD-------PTAPHIARAKKVSPYINRDQLSDI 436
            K+  L  G+ +E  +  +N        +       P  P I     +S       L   
Sbjct: 55  VKIPALSPGD-HEVTINYLNGFQSKFTLNEKDVSLIPETPEI---LDLSADFFTSSLLLK 110

Query: 437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSG 495
               GS      N   E           I ++   R + V     +T L   D+ +  + 
Sbjct: 111 WNDRGSALPHPSNATWE-----------IKVLQNPRTEPVALVLLNTMLSGKDTVQHWNW 159

Query: 496 IYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDGGAPIEYYMV--EKMETDTGK 548
              L ++ +  +      +     S       W+P ++          V  +      G 
Sbjct: 160 TSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGS 219

Query: 549 -VLIKWI-RTNDKRVTIDNVDYF------TKITIRPLQRSDTAQYTVTATNSQGKDQVFI 600
            + I  +  T      I N            + I  L    +             D    
Sbjct: 220 NMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGT 279

Query: 601 EVVVTDKPSAPEGPIQWLLTLTDVT--WEISNYLQELHSSLMPISLESQYLMNDKRVTI- 657
            V     P  P+        L ++   W        +       +L              
Sbjct: 280 VVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRI 339

Query: 658 -DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD--KPSAPEGP 708
               +   ++ ++     +   +T+T  N  G+ Q  + + VT+   P  P   
Sbjct: 340 EGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSL 393

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-----IPVGKTREPEMDVT 115
           L+V +I+    T  W  P +     L    +E     +        I   +     + V 
Sbjct: 393 LKVKDINSTVVTFSWYLPGNFTKINL-LCQIEICKANSKKEVRNATIRGAEDSTYHVAVD 451

Query: 116 GLTPGHEYKFRVKA 129
            L P   Y FRV+ 
Sbjct: 452 KLNPYTAYTFRVRC 465

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 58.7 bits (142), Expect = 9e-11
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 443 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST----KLKVFDSKRGDSGIYT 498
               +  V G P PT  WL N   +       +    +       L        ++G YT
Sbjct: 22  EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81

Query: 499 LAVKNSWGTDKGTAKVTVLG 518
           L  KN  GT   T     L 
Sbjct: 82  LIAKNPLGTANQTINGHFLK 101

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 53.3 bits (128), Expect = 9e-09
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSP-----PGGPLKVS 233
               L        + G YT+ A+N  G  +  +    L +P P     P  P+ V+
Sbjct: 63  SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITVT 118

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 14/79 (17%)

Query: 551 IKWIR-----TNDKRVTI----DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 601
           + W+         K + +    +       +        +   YT+ A N  G     I 
Sbjct: 37  LHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN 96

Query: 602 VVVTDKPS-----APEGPI 615
                +P      +P  PI
Sbjct: 97  GHFLKEPFPVDEVSPTPPI 115

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 9/72 (12%)

Query: 649 LMNDKRVTI----DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS- 703
           L   K + +    +       +        +   YT+ A N  G     I      +P  
Sbjct: 46  LRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 105

Query: 704 ----APEGPIQI 711
               +P  PI +
Sbjct: 106 VDEVSPTPPITV 117

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 36/212 (16%), Positives = 69/212 (32%), Gaps = 29/212 (13%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKS 481
           P I  +  +D+ V+       +  V G+P PT EW  +   + + +    R +  +    
Sbjct: 10  PRI-IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKW-NPPED-----DGGAPI 534
               +   K  D G Y    KN  G      A + +      +   P+D        A +
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128

Query: 535 EYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTK-----------ITIRPLQRSDTA 583
           E    +       +  + WI+ +   +       F             + I  ++  D  
Sbjct: 129 ECGPPK----GIPEPTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183

Query: 584 QYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGP 614
            Y   A N  G  +  + +++V  K +A    
Sbjct: 184 NYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 8/101 (7%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKIVNDDK-- 480
           +       +  D +V  G     +     G P PT  W+ + + +            +  
Sbjct: 107 LRDDFRV-EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR 165

Query: 481 ---STKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVL 517
                 L + + +  D G Y    +N  GT +   AK+ V 
Sbjct: 166 IVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 33/179 (18%)

Query: 552 KWIRTNDK---RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD---QVFIEVVV- 604
           + + TN+K   RV   +   F   T++  +  D  +Y   A N  G+       +++ V 
Sbjct: 48  EPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107

Query: 605 ----TDKPSAPEGPIQWLLTLT----------DVTWEISNYLQELHSSLMPISLESQYLM 650
                 +P            L            + W             +       +  
Sbjct: 108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG-------VPLDDLKAMSFGA 160

Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGP 708
           + +   +D       + I  ++  D   Y   A N  G  +  + +++V  K +A    
Sbjct: 161 SSRVRIVDG----GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 3/91 (3%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            S P   L+V       + + W  P       +  Y +   +                + 
Sbjct: 5   SSVPTK-LEVVAATPTSLLISWDAPMSSS--SVYYYRITYGETGGNSPVQEFTVPYSSST 61

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
             + GL P   Y   V A  +         +
Sbjct: 62  ATISGLSPGVDYTITVYAWGEDSAGYMFMYS 92

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 2/94 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
              P   E+       + ++W  P  +    +  Y I   E       +       +   
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAPMSSS--SVYYYRITYGETGGNSPVQEFTVPYSSSTA 62

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI 418
            +  L  G  Y   V A  +   G     +   I
Sbjct: 63  TISGLSPGVDYTITVYAWGEDSAGYMFMYSPISI 96

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 14/93 (15%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG------VWIPVGKTR 108
              P  LEV         + W+ P       +  Y +  Y    G        +P   + 
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAPMSSS--SVYYYRIT-YGETGGNSPVQEFTVPYSSS- 60

Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
                ++GL+PG +Y   V A  ++        
Sbjct: 61  --TATISGLSPGVDYTITVYAWGEDSAGYMFMY 91

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
            P  P   L+  N+      L WK P +    P++ Y +              ET G   
Sbjct: 7   GPDGPTQ-LRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAPPLQ--AETPGSAV 59

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFN 323
              +  L+ +  Y   VR +     + P + T +   + P +
Sbjct: 60  DYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRD 101

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           P+GP  L   N+ +    L W  P++    P++ Y ++   P              +  +
Sbjct: 8   PDGPTQLRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAPPLQAETPGSAVDYPL 63

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET 141
             L     Y   V+ L     + P   
Sbjct: 64  HDLVLHTNYTATVRGLRGPNLTSPASI 90

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P      +    F  L W PP+    +P+  Y I+     +P  +  A+T G     
Sbjct: 8   PDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQ--AETPGSAVDY 61

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 426
            + DL+    Y   V  +       P+         AP    AK+V+P
Sbjct: 62  PLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTP 109

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 220 LDKPSPPGGPLKVS-NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
           LD+   P  P  +        + + W  P++     +  Y +     +    T   + + 
Sbjct: 22  LDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNI-VVRGYAIGYGIGSPHAQTI--KVDY 78

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
                 +E L P+  Y   ++A N  G+  PL  +A 
Sbjct: 79  KQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAV 115

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 307 SEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK 366
           ++ L+        +    P  P +  ++   T  + ++WTPPE      + GY I     
Sbjct: 10  TDWLSAETFESDLDETRVPEVPSSLHVRPLVTS-IVVSWTPPENQNI-VVRGYAIGYGIG 67

Query: 367 YSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
                 +  + +       + +L   + Y   + A N  G G P   +A
Sbjct: 68  SP--HAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESA 114

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131
            + W  P++     + GY +                ++    +  L P   Y   +KA N
Sbjct: 44  VVSWTPPENQNI-VVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFN 102

Query: 132 KEGESEPLET 141
             GE  PL  
Sbjct: 103 NVGEGIPLYE 112

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 40/223 (17%), Positives = 70/223 (31%), Gaps = 44/223 (19%)

Query: 420 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-----KDRFK 474
           R +   P I  +  SD+ V  G     +    G P PT EW      + +     +    
Sbjct: 4   RQEDFPPRI-VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62

Query: 475 IVNDD--KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGG 531
           ++        ++      R D G+Y    +N  G      A + V          +    
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL-----RDD---- 113

Query: 532 APIEYYMVEKMETDTGKVL-------------IKW------IRTNDKRVTIDNVDYFTKI 572
                   + M       +             I W      +   D+R+TI       K+
Sbjct: 114 --FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG----GKL 167

Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGP 614
            I   ++SD  +Y    TN  G+ +    E+ V ++PS  +  
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 52/190 (27%)

Query: 551 IKWIRTNDKRVTIDNVD-------------YFTKITIRPLQRSDTAQYTVTATNSQGK-- 595
           I+W +   +RV  D  D             +F +I      R D   Y   A N  G+  
Sbjct: 41  IEWYK-GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV 99

Query: 596 DQVFIEVVVTDKPSAPEGPIQWLLTLTD----------------VTWEISNYLQELHSSL 639
                  V   +    + P   ++ + +                ++W+            
Sbjct: 100 SHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDG--------- 150

Query: 640 MPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVV 698
            P+         D+R+TI       K+ I   ++SD  +Y    TN  G+ +    E+ V
Sbjct: 151 SPLDD------KDERITIRG----GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200

Query: 699 TDKPSAPEGP 708
            ++PS  +  
Sbjct: 201 LERPSFVKAA 210

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 60.1 bits (145), Expect = 2e-10
 Identities = 30/196 (15%), Positives = 52/196 (26%), Gaps = 28/196 (14%)

Query: 234 NVHAEGV----TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLI 289
           NV    V     L W+ P    GQ    +    +     +      T    T  +   L 
Sbjct: 7   NVRMNSVNFKNILQWESPAFAKGQLT--FTAQYLSYRIFQDKCMQTTL---TECDFSSLS 61

Query: 290 PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPE 349
               +  RVRA      S+ +  T S         PG            D + + +  P+
Sbjct: 62  KYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVL-----ADCLHMRFLAPK 116

Query: 350 QNGGS---------PIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 400
                             Y ++  ++ +    +            + +L     Y  +V 
Sbjct: 117 IENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQ---ITPQYDFEVLRNLEPWTTYCVQVR 173

Query: 401 AVNK--GGPGEPSDPT 414
                    GE S+P 
Sbjct: 174 GFLPDRNKAGEWSEPV 189

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131
            L+W  P    G+    +  + Y           +T   E D + L+   ++  RV+A  
Sbjct: 18  ILQWESPAFAKGQL--TFTAQ-YLSYRIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEF 74

Query: 132 KEGESEPLET 141
            +  S+ ++ 
Sbjct: 75  ADEHSDWVQI 84

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 6/109 (5%)

Query: 327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKV 386
            P    +   +   + L W  P    G   + +  +    Y    +KC QT     +   
Sbjct: 4   PPENVRMNSVNFKNI-LQWESPAFAKGQ--LTFTAQYLS-YRIFQDKCMQT--TLTECDF 57

Query: 387 LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSD 435
             L +   +  RV A       +    T   +       P +  + L+D
Sbjct: 58  SSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLAD 106

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
            L  ++V  G    F+I +  EP    +W      + +    +I+ D K   L + + + 
Sbjct: 11  PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQL 69

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
           G +G  +    N     K  A + V
Sbjct: 70  GMTGEVSFQAAN----TKSAANLKV 90

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 5/97 (5%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            S P   L+V       + + W          +  Y +   +             G  + 
Sbjct: 5   SSVPTK-LEVVAATPTSLLISWDASSS----SVSYYRITYGETGGNSPVQEFTVPGSSST 59

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
             + GL P   Y   V A           + +SI  +
Sbjct: 60  ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG------VWIPVGKTR 108
              P  LEV         + W+         +  Y +  Y    G        +P   + 
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDASSS----SVSYYRIT-YGETGGNSPVQEFTVPGSSS- 58

Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
                ++GL+PG +Y   V A     +     + SSI  R
Sbjct: 59  --TATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 4/75 (5%)

Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 400
           + ++W        S +  Y I   E       +     G +    +  L  G  Y   V 
Sbjct: 21  LLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVY 76

Query: 401 AVNKGGPGEPSDPTA 415
           A         S   +
Sbjct: 77  AYYSYYDLYYSYSPS 91

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 60.7 bits (146), Expect = 5e-10
 Identities = 26/199 (13%), Positives = 55/199 (27%), Gaps = 15/199 (7%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
           +  PP   L VS  +   V   W  P+         Y     D+   +  P         
Sbjct: 2   ETQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRRS---- 57

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
                 L      +   +    + +   +     I +    +        +    +  ++
Sbjct: 58  --IEVPLNERICLQVGSQCSTNESEKPSILVEKCI-SPPEGDPESAVTELQCIWHNLSYM 114

Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGD-TPKGKVLDLIEGN-----QY 395
           + +W P      SP   Y +    +      +C     +    G   DL +       Q+
Sbjct: 115 KCSWLPGRN--TSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQH 172

Query: 396 EFRVLAVNKGGPGEPSDPT 414
             +++  +  G  +PS   
Sbjct: 173 SVQIMVKDNAGKIKPSFNI 191

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 53.0 bits (126), Expect = 1e-07
 Identities = 42/296 (14%), Positives = 75/296 (25%), Gaps = 67/296 (22%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
           P   L VS  +       WN P+         Y     D +     P  +          
Sbjct: 6   PVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRRSI----EVP 61

Query: 117 LTPGHEYKFRVKALNKEGE--SEPLETFSSIIARDP------------------------ 150
           L      +   +    E E  S  +E   S    DP                        
Sbjct: 62  LNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPG 121

Query: 151 --------YSKYTSVSSLD------SHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRAD 196
                   Y+ Y    SL+      +  R  Q  G              +  V+      
Sbjct: 122 RNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQ------ 175

Query: 197 AGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVS-NVHAEGVTLDWKVPDDDGGQPI 255
                +  ++  GK      ++ L     P  P   + + H + + + W+ P +   + +
Sbjct: 176 -----IMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCL 230

Query: 256 E-----------KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
                        + V  + EA              +   V G++P+     R+R 
Sbjct: 231 FYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 5e-10
 Identities = 71/486 (14%), Positives = 135/486 (27%), Gaps = 145/486 (29%)

Query: 242 LDWKVPDDDGGQPIEKYVVDKM------DEATGR--WTPAGETEGPVTGLEVEGLIPNHK 293
            D K   D     + K  +D +         T R  WT   + E  V     E L  N  
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-- 90

Query: 294 YKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGG 353
           YKF +  +  + +   + T   IE ++                              N  
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRL---------------------------YNDN 123

Query: 354 SPIVGYIIEKKEKYSPIWEKCAQT---------EGDTPKGK-VL------DLIEGNQYEF 397
                Y + + + Y  +  +             +G    GK  +            + +F
Sbjct: 124 QVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 398 RVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT 457
           ++  +N      P            ++ P  N    SD      SN +  I+ I      
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDH----SSNIKLRIHSI------ 230

Query: 458 KEWLCNDITIISKDRFK---IVNDDKSTK--LKVFDSK-------RGDSGI--------- 496
           +  L     ++    ++   +V  +         F+         R    +         
Sbjct: 231 QAELRR---LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATT 286

Query: 497 -YTLAVKNSWGTDKGTAK---VTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIK 552
            +     +S        K   +  L C  +  P E     P    ++        + +  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-------AESIRD 339

Query: 553 WIRTND--KRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 610
            + T D  K V  D +    + ++  L+ ++  +              F  + V      
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-------------FDRLSVF----- 381

Query: 611 PEG---PIQWLLTLTDVTW------EISNYLQELHS-SL-------MPISLESQYLMNDK 653
           P     P   L  +    W      ++   + +LH  SL         IS+ S YL  + 
Sbjct: 382 PPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL--EL 435

Query: 654 RVTIDN 659
           +V ++N
Sbjct: 436 KVKLEN 441

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 3e-08
 Identities = 94/655 (14%), Positives = 178/655 (27%), Gaps = 190/655 (29%)

Query: 90  LVEKYDPETGV----WIPVGKTRE--PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFS 143
           ++   D  +G     W  + K  E   +     L     YKF +  +  E     + T  
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRM 111

Query: 144 SIIARD-------PYSKYTSVSSLDSHKRSNQPCGSGMVRK-VQHLDYNTKLGVR-MAQR 194
            I  RD        ++KY +VS L  + +         +R+ +  L     + +  +   
Sbjct: 112 YIEQRDRLYNDNQVFAKY-NVSRLQPYLK---------LRQALLELRPAKNVLIDGV--- 158

Query: 195 ADAGFYTVTAENINGKDSVEVEVIVLDKP---SPPGGP--LKVSNVHAEGVTLDWKVPDD 249
              G          GK  V ++V  L              L + N ++    L       
Sbjct: 159 --LGS---------GKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVL------- 199

Query: 250 DGGQPIEK--YVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFR---------- 297
              + ++K  Y +D    +    +   +        E+  L+ +  Y+            
Sbjct: 200 ---EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCLLVLLNVQN 255

Query: 298 ---VRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE------LA-WT- 346
                A N   K   L TT   +  + F          +               L  +  
Sbjct: 256 AKAWNAFNLSCKI--LLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 347 ------PPEQNGGSPIVGYII-EKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
                 P E    +P    II E        W+       D    K+  +IE        
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD----KLTTIIE-------- 360

Query: 400 LAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 459
            ++N                    + P   R     + V     F    +     IPT  
Sbjct: 361 SSLN-------------------VLEPAEYRKMFDRLSV-----FPPSAH-----IPTIL 391

Query: 460 ----WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA--- 512
               W      +I  D   +VN      L     K     I ++ ++     +   A   
Sbjct: 392 LSLIWF----DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 513 ----KVTVLGCSLKWN--PPEDDG------GAPIEYYMVEKMETDTGKVLIKWIRTNDKR 560
                  +       +  PP  D       G    +++      +   +           
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKNIEHPERMTLFRMVF------ 497

Query: 561 VTIDNVDY-FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLL 619
                +D+ F +  IR      TA     +  +  +   F +  + D     E   + + 
Sbjct: 498 -----LDFRFLEQKIR---HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---RLVN 546

Query: 620 TLTDVTWEIS-NYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQR 673
            + D   +I  N +   ++ L+ I+     LM +        +   +   + +QR
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIA-----LMAED-------EAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 7e-04
 Identities = 60/402 (14%), Positives = 125/402 (31%), Gaps = 113/402 (28%)

Query: 333 IKDFDT----DFVELAWTPPEQNGGSPIVGYIIEKKEK----YSPIWEKCAQTEGDTPKG 384
           + +FD     D  +   +  E       + +II  K+         W   ++ E +  + 
Sbjct: 30  VDNFDCKDVQDMPKSILSKEE-------IDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQK 81

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK-------VSPY-INRDQLSDI 436
            V +++  N Y+F +  + K    +PS  T  +I +  +        + Y ++R Q    
Sbjct: 82  FVEEVLRIN-YKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL- 138

Query: 437 KVRAG-SNFEFDINVI-------GEPIPTKEWL----CNDITIISKDRFKIVNDDKSTKL 484
           K+R          NV+       G     K W+    C    +  + +            
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSG-----KTWVALDVCLSYKV--QCKM----------- 180

Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWN-PPEDDGGAPIEYYMVEKME 543
                   D  I+ L +KN    +     +  L   +  N     D  + I+  +     
Sbjct: 181 --------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--I 230

Query: 544 TDTGKVLIKWIRTNDKRVTIDNV------DYF-----TKITIRPLQRSDTAQYTVTA--- 589
               + L+K     +  + + NV      + F       +T R  Q +D      T    
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 590 --------TNSQGKDQVFIEVVVTDKPSAPE-----GP-----IQWLLTLTDVTWEISNY 631
                   T  + K  + ++ +       P       P     I   +     TW+  N+
Sbjct: 291 LDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--NW 347

Query: 632 LQ---ELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRP 670
                +  ++++  SL        ++        F ++++ P
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRK-------MFDRLSVFP 382

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 5/85 (5%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
               +             +     P   W  +   +   +   +  D +  +L + ++K 
Sbjct: 16  DKVSLTFTTSERVVLTCELSRVDFPAT-WYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            DSG +                VTV
Sbjct: 75  QDSGEFECRT----EGVSAFFGVTV 95

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 12/86 (13%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
             +++  AG++      V  +      W  +   + S  + ++     + +L V  + + 
Sbjct: 18  HREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQA 76

Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLG 518
           ++G Y+       G  + + ++ V G
Sbjct: 77  EAGEYSCEA----GGQQLSFRLQVAG 98

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 58.4 bits (141), Expect = 7e-10
 Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 28/201 (13%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKS 481
           + P+   ++  +++V+ G       +         +  WL N+  +      +      +
Sbjct: 7   LDPFP-PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
             L + + +  D G Y+  V +   T    +K   L   +                  + 
Sbjct: 66  GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPL---IPIPERTTKPYPADIVVQFKD 122

Query: 542 METDTGKVL-------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTA 583
           +    G+ +             I+W +      +   ++         + I  +Q  D  
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG----AVLKIFNIQLEDEG 178

Query: 584 QYTVTATNSQGKDQVFIEVVV 604
            Y   A N +GKD+    + V
Sbjct: 179 IYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 52.2 bits (125), Expect = 8e-08
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           Q  D+    G N   +   +G P+P   W      + S              LK+F+ + 
Sbjct: 119 QFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG----AVLKIFNIQL 174

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLG 518
            D GIY    +N  G DK  A++ V  
Sbjct: 175 EDEGIYECEAENIRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 25/178 (14%), Positives = 49/178 (27%), Gaps = 50/178 (28%)

Query: 551 IKWIRTNDKRVTIDNVDYFTKIT-----IRPLQRSDTAQYTVTATNSQGKDQV---FIEV 602
            +W+          +   F   T     I  ++ SD   Y+   ++      V   FI +
Sbjct: 42  YRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPL 101

Query: 603 VVTDKPSAPEGPIQWLLTLTD----------------------VTWEISNYLQELHSSLM 640
           +   + +    P   ++   D                      + W              
Sbjct: 102 IPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVL---------E 152

Query: 641 PISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
           P+   ++   +   + I N+           Q  D   Y   A N +GKD+    + V
Sbjct: 153 PMPSTAEISTSGAVLKIFNI-----------QLEDEGIYECEAENIRGKDKHQARIYV 199

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 57.9 bits (140), Expect = 8e-10
 Identities = 27/178 (15%), Positives = 57/178 (32%), Gaps = 28/178 (15%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK--LKVFDSKR 491
             + V  G   + + +V G   P  +W+ +   + + D+  I   ++     L +   +R
Sbjct: 10  VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 69

Query: 492 GDSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGK-- 548
            D+G Y   V++   T+      +TV G       P+D          +        +  
Sbjct: 70  SDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKD----------LAVPPNAPFQLS 119

Query: 549 ---------VLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 597
                    V I W R    ++            +     + +  ++  A N +G   
Sbjct: 120 CEAVGPPEPVTIVWWR-GTTKIGGPAPSP---SVLNVTGVTQSTMFSCEAHNLKGLAS 173

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 16/152 (10%), Positives = 50/152 (32%), Gaps = 23/152 (15%)

Query: 551 IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEV 602
           I+W++        +   + +    +   ++++ ++RSD  +Y     +    +    + +
Sbjct: 34  IQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWL 93

Query: 603 VVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSLMPISLESQYLMNDKRVTIDN 659
            V       EG   + +   D+    +   Q   E      P+++   +     ++    
Sbjct: 94  TV-------EGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTI--VWWRGTTKIGGPA 144

Query: 660 VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 691
                   +     + +  ++  A N +G   
Sbjct: 145 PSP---SVLNVTGVTQSTMFSCEAHNLKGLAS 173

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 58.2 bits (140), Expect = 9e-10
 Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 10/198 (5%)

Query: 225 PPGGPLKVS--NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT- 281
           PPG P      + + E  T  W+   D G          +  E      P   T GP + 
Sbjct: 3   PPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSC 62

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGK-PGTPEIKDFDTDF 340
               +       Y   V A N+ G S        +      + P +     +  +    +
Sbjct: 63  HFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPY 122

Query: 341 VELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
           + + W+PP   +   G   + Y I  K + +  WE      G   + K+L L  G +Y  
Sbjct: 123 LWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWE--IHFAGQQTEFKILSLHPGQKYLV 180

Query: 398 RVLAVNKGGP-GEPSDPT 414
           +V      G     S  T
Sbjct: 181 QVRCKPDHGYWSAWSPAT 198

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 28/126 (22%), Positives = 39/126 (30%), Gaps = 15/126 (11%)

Query: 201 TVTAENINGK---DSVEVEVIVLDKPSPPGGP---LKVSNVHAEGVTLDWKVP---DDDG 251
            V A N  G    D + V+V  + +P PP      +K        + + W  P   D   
Sbjct: 78  MVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKT 137

Query: 252 GQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK----S 307
           G     Y +    E    W       G  T  ++  L P  KY  +VR     G     S
Sbjct: 138 GWFTLLYEIRLKPEKAAEWEI--HFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWS 195

Query: 308 EPLTTT 313
                 
Sbjct: 196 PATFIQ 201

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 58.2 bits (140), Expect = 9e-10
 Identities = 28/194 (14%), Positives = 46/194 (23%), Gaps = 22/194 (11%)

Query: 233 SNVHAE----GVTLDWKVPDDDGGQ---PIEKYVVDKMDEATGRWTPAGETEGPVTGLE- 284
             +          L W      G      +E     +    +  W P+        G E 
Sbjct: 11  QQLSVLSTNMKHLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSL-TEGPEC 69

Query: 285 --VEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE 342
              + +     Y  RVRA      S           K+PFN+     T    +   D   
Sbjct: 70  DVTDDITATVPYNLRVRATLGSQTSAWSIL------KHPFNRQSTILTRPGMEITKDGFH 123

Query: 343 LAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV 402
           L     +     P   +++    +     E             +  +  G  Y  +    
Sbjct: 124 LVIELEDL---GPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTF 180

Query: 403 NK--GGPGEPSDPT 414
            K  G     S   
Sbjct: 181 VKAIGRYSAFSQTE 194

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 11/123 (8%)

Query: 202 VTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV 260
           V A   +       ++     + +    P     +  +G  L  ++ D     P  +++V
Sbjct: 85  VRATLGSQTSAWSILKHPFNRQSTILTRP--GMEITKDGFHLVIELED---LGPQFEFLV 139

Query: 261 DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV----NKQGK-SEPLTTTAS 315
                  G              + +E + P   Y  + +       +    S+       
Sbjct: 140 AYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQ 199

Query: 316 IEA 318
            EA
Sbjct: 200 GEA 202

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 13/111 (11%)

Query: 408 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 467
           G       P I               ++  +             G+P+P   WL    T 
Sbjct: 1   GSSGSSGPPII-----------LQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTF 49

Query: 468 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
             +D    + +  +  L++ + +  D+G YT    +S G    +A + V  
Sbjct: 50  PGRDPRATIQEQGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 551 IKWIR------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           I W++        D R TI          I+ L+ SDT  YT  AT+S G+      + V
Sbjct: 40  ISWLKEGFTFPGRDPRATIQEQGTLQ---IKNLRISDTGTYTCVATSSSGETSWSAVLDV 96

Query: 605 TD 606
           T+
Sbjct: 97  TE 98

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 50/485 (10%), Positives = 116/485 (23%), Gaps = 60/485 (12%)

Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKV 246
           + +    + D+G Y       +   S +V + V   P         +      VT++   
Sbjct: 77  VNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPF 136

Query: 247 PDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG----------------LEVEGLIP 290
                     K +  ++         +     P                   + +  L  
Sbjct: 137 KT--ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL 194

Query: 291 NHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQ 350
           +   ++  +A +    ++       ++ +         G+          V        +
Sbjct: 195 SDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCR 254

Query: 351 NGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE----FRVLAVNKGG 406
                    ++    K +P +E           G    +I G + E    +   A + G 
Sbjct: 255 QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQ 314

Query: 407 PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT 466
             E S        +             + +K  AGS+         +   + ++ C    
Sbjct: 315 LQEGS---PIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEG 371

Query: 467 IISKDRFKIVNDDKSTKLK------VFDSKRG-------------DSGIYTLAVKNSWGT 507
             +     +V+ +   K +      + +                 D+G Y          
Sbjct: 372 AQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431

Query: 508 DKGTAKVTVLGCSLKW---NPPEDDGGAPIEYYMVEKMETDTGKVLIKWIR--------- 555
                   + G        N     G             +   K   KW           
Sbjct: 432 RTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQ 491

Query: 556 --TNDKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKDQVF-IEVVVTDKPSAP 611
                K     + +     +T+  + R+D   Y           +   + V V ++ +A 
Sbjct: 492 DEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAG 551

Query: 612 EGPIQ 616
              + 
Sbjct: 552 SRDVS 556

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 58.1 bits (139), Expect = 6e-09
 Identities = 30/318 (9%), Positives = 80/318 (25%), Gaps = 43/318 (13%)

Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCND-ITIISKDRFKIVNDDK--STKLKVFDSKRG 492
           +     +  +F                        + R  +   DK  S  + +   ++ 
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKE 300

Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDD------------------GGAP- 533
           D+G Y     +     +G+          + +                            
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKES 360

Query: 534 --IEYYMVEKMETDTGKVLIKWIRTNDK-----RVTI--DNVDYFTKITIRPLQRSDTAQ 584
             I+Y+ + +   +    L+       K     R+++  +  +    + +  L   D   
Sbjct: 361 KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGF 420

Query: 585 YTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMP--- 641
           Y                 ++  +P+         +    +      +  +  S       
Sbjct: 421 YWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCH-FPCKFSSYEKYWCK 479

Query: 642 ------ISLESQYLMNDKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKDQVF- 693
                  +L SQ     K     + +     +T+  + R+D   Y           +   
Sbjct: 480 WNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAA 539

Query: 694 IEVVVTDKPSAPEGPIQI 711
           + V V ++ +A    + +
Sbjct: 540 VYVAVEERKAAGSRDVSL 557

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 33/264 (12%), Positives = 81/264 (30%), Gaps = 35/264 (13%)

Query: 463 NDITIISKDRFKIVNDDKSTK--LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGC- 519
             ++     R  + N  ++    + +    + DSG Y   +  +         + V    
Sbjct: 54  GYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGP 113

Query: 520 ---------------SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDK---RV 561
                          ++  N P     A     + +++      V+      N     R+
Sbjct: 114 GLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRI 173

Query: 562 TI---DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE-GPIQW 617
            +           + I  L+ SD  QY   A +    ++   ++ V           ++ 
Sbjct: 174 RLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRG 233

Query: 618 LLTLT-DVTWEISNYLQELHS-------SLMPISLESQYLMNDKRVTI--DNVDYFTKIT 667
            +T    +  E++N  + L          ++  +L  +    + R+ +   + D    + 
Sbjct: 234 SVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVV 293

Query: 668 IRPLQRSDTAQYTVTATNSQGKDQ 691
           I  L++ D  +Y   A +     +
Sbjct: 294 ITGLRKEDAGRYLCGAHSDGQLQE 317

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 41.9 bits (97), Expect = 7e-04
 Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 18/164 (10%)

Query: 560 RVTI--DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI-Q 616
           R  +     +    + I  L + D+ +Y      +       + + V+  P         
Sbjct: 63  RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVY 122

Query: 617 WLLTLTDVTWE---ISNYLQE---------LHSSLMPISLESQYLMNDKRVTI---DNVD 661
            +     VT      +   Q+         L+  L+  S          R+ +       
Sbjct: 123 TVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQ 182

Query: 662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
               + I  L+ SD  QY   A +    ++   ++ V       
Sbjct: 183 LLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPEL 226

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 3/93 (3%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPE-QNGGSPIVGYIIEKKEKYSPIWE--KCAQTEGDT 381
              P        +   + L W      N  +PI G+ I  +   S      K    EGD 
Sbjct: 9   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68

Query: 382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
               +  L     Y+ ++   N+GG  E S+  
Sbjct: 69  YWHSISHLQPETSYDIKMQCFNEGGESEFSNVM 101

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 225 PPGGP--LKVSNVHAEGVTLDWK-VPDDDGGQPIEKYVV---DKMDEATGRWTPAGETEG 278
           P  GP       V+   + L W  +P  +   PI  + +       +    +      EG
Sbjct: 8   PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD-MVEG 66

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
                 +  L P   Y  +++  N+ G+SE 
Sbjct: 67  DRYWHSISHLQPETSYDIKMQCFNEGGESEF 97

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 72  TLKWNK-PKDDGGEPLEGYLV---EKYDPETGVWIPVG-KTREPEMDVTGLTPGHEYKFR 126
            LKW   P  +   P+ G+ +            +     +       ++ L P   Y  +
Sbjct: 26  MLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIK 85

Query: 127 VKALNKEGESEPLETFSSII 146
           ++  N+ GESE    FS+++
Sbjct: 86  MQCFNEGGESE----FSNVM 101

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 31/195 (15%), Positives = 51/195 (26%), Gaps = 23/195 (11%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK--------LK 485
            ++++   +  +      G   P  EW  +         +                  + 
Sbjct: 12  PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGIT 71

Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKGTA--KVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
                R D+G YT  V    G   G    K+ VL    K               ++   E
Sbjct: 72  FKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSE 131

Query: 544 TD-TGKVLIKWIR-------TNDKRVTIDNVDYFT-----KITIRPLQRSDTAQYTVTAT 590
            D +      W +                N  Y       ++   PL  SDT +Y+  A 
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191

Query: 591 NSQGKDQVFIEVVVT 605
           N  G       V + 
Sbjct: 192 NGYGTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 55.4 bits (133), Expect = 9e-09
 Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 17/153 (11%)

Query: 558 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEGPI 615
           + RVT       T IT + + R DT  YT   +   G     V ++++V   PS P   I
Sbjct: 60  EDRVTFLP----TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNI 115

Query: 616 QWLLTL-TDVTWE--------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKI 666
               T+                S Y       +MP + +S    ++    ++      ++
Sbjct: 116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTT--GEL 173

Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
              PL  SDT +Y+  A N  G       V + 
Sbjct: 174 VFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 9/101 (8%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKI------- 475
           V P              G+          G P     W  + I + +  +          
Sbjct: 106 VPPSKPT-VNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164

Query: 476 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
           V +  + +L        D+G Y+   +N +GT   +  V +
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
            L   +   G+       +    +   EW     T+    R+ +  D    +L++ D   
Sbjct: 14  DLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSV 71

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLG 518
            D+G Y+       G ++ +A +TV  
Sbjct: 72  ADAGEYSCMC----GQERTSATLTVRA 94

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
            L + +   G+       +         W     T+   DR  +  D    +L++     
Sbjct: 25  GLRNEEATEGATAVLRCELSKMAPVE--WWKGHETLRDGDRHSLRQDGARCELQIRGLVA 82

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            D+G Y        G ++ +A +TV
Sbjct: 83  EDAGEYLCMC----GKERTSAMLTV 103

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDS 489
           QL D     G   E +  V  E     +W  N   I    K R++I  + K   L +  +
Sbjct: 13  QLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGA 71

Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            + D+  Y++         + +AK++V
Sbjct: 72  TKADAAEYSVMT----TGGQSSAKLSV 94

>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor complex, immune system; 2.52A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R Length = 214

 Score = 56.7 bits (136), Expect = 3e-09
 Identities = 30/208 (14%), Positives = 50/208 (24%), Gaps = 28/208 (13%)

Query: 223 PSPPGGPLKVSNVHAE----GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPA----G 274
           PSPP       +V  E       L W             Y V  +      W        
Sbjct: 6   PSPP-------SVWFEAEFFHHILHWTPIPQQSESTC--YEVALLRYGIESWNSISQCSQ 56

Query: 275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK 334
                +T      L  ++ Y+ RVRAV+    S+   T                      
Sbjct: 57  TLSYDLT-AVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEV--TLTVGSVNLEI 113

Query: 335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK------CAQTEGDTPKGKVLD 388
                  ++    P+          I     +Y     K          +    +  +L 
Sbjct: 114 HNGFILGKIQLPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHEQFSLLT 173

Query: 389 LIEGNQYEFRVLAV--NKGGPGEPSDPT 414
             E  ++  +V     ++   G  S   
Sbjct: 174 SGEVGEFCVQVKPSVASRSNKGMWSKEE 201

>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor complex, immune system; 2.52A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R Length = 214

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK-TREPEMDVTGLT----PGHEYKFR 126
            L W             Y V         W  + + ++    D+T +T      + Y+ R
Sbjct: 21  ILHWTPIPQQSESTC--YEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRAR 78

Query: 127 VKALNKEGESEPLETFSSIIARDPY 151
           V+A++    S+   T +     +  
Sbjct: 79  VRAVDGSRHSQWTVTNTRFSVDEVT 103

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           +   ++V AGS   F+       +  + W      I + +++ +  +     L V +   
Sbjct: 14  KPRSVEVAAGSPAVFEAETERAGVKVR-WQRGGSDISASNKYGLATEGTRHTLTVREVGP 72

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            D G Y +      G+ K    + V
Sbjct: 73  ADQGSYAVIA----GSSKVKFDLKV 93

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 341 VELAWTPPEQNGGSPIVGYIIE-KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
           + + W  PE+  G  I GY +    +    +         D+    + +L+    Y  +V
Sbjct: 35  ILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKV 93

Query: 400 LAVNKGGPGEPSDP 413
           LA    G G  S  
Sbjct: 94  LAFTSIGDGPLSSD 107

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 10/112 (8%)

Query: 209 GKDSVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV---DKMD 264
              S  V        PS     ++   + +  + + WK P++  GQ I+ Y V       
Sbjct: 3   SGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQ-IQGYRVYYTMDPT 61

Query: 265 EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
           +    W              +  L+P   Y  +V A    G    S  +   
Sbjct: 62  QHVNNWMK--HNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVI 111

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 72  TLKWNKPKDDGGEPLEGYLV---EKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVK 128
            ++W +P++  G+ ++GY V            W+           +  L P   Y  +V 
Sbjct: 36  LVQWKEPEEPNGQ-IQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVL 94

Query: 129 ALNKEGE---SEPLE 140
           A    G+   S  ++
Sbjct: 95  AFTSIGDGPLSSDIQ 109

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 413 PTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR 472
           PT P         P+    ++  + V  G   +    +    + +  WL + + ++  +R
Sbjct: 1   PTLPEQ-----AQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNR 54

Query: 473 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            +I  +    +++V DS   DSG+Y     +  G+D     V V
Sbjct: 55  TRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
              +V  G    F + +  +P    +W  N   I    ++   +      L + + +  D
Sbjct: 16  PAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTD 74

Query: 494 SGIYTLAVKNSWGTDKGTAKVTV 516
              Y +      G +K + ++ V
Sbjct: 75  DSEYYVTA----GDEKCSTELFV 93

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 5/84 (5%)

Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
              +             +   P     W  +   ++      +  +D   +L +   +  
Sbjct: 20  KVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLE 78

Query: 493 DSGIYTLAVKNSWGTDKGTAKVTV 516
           DSG Y   +      +  +  VTV
Sbjct: 79  DSGEYLCEI----DDESASFTVTV 98

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 298 VRAVNKQGKSEPLTTTASIEAKNPFNQP-GKPGTPEIKDFDTDFVELAWTPP---EQNGG 353
             + N+ G       T  I      + P   P    ++  ++  ++++W PP    QNG 
Sbjct: 4   GSSGNRYGPGVS---TDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG- 59

Query: 354 SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
             I GY I  ++       +    E +        L +G+QY F+V A+   G G PS+ 
Sbjct: 60  -FITGYKIRHRKTTR--RGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW 116

Query: 414 T 414
            
Sbjct: 117 Y 117

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 13/122 (10%)

Query: 201 TVTAENINGK--DSVEVEVIVL-DKPS-PPGGPLKVSNVHAEGVTLDWKVPDDDG--GQP 254
           + ++ N  G    + ++ V+ L D PS PP   + +  V++  + + W  P      G  
Sbjct: 3   SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQN-VSLEVVNSRSIKVSWLPPPSGTQNGF- 60

Query: 255 IEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLT 311
           I  Y +      T R       E         GL    +Y F+V A+   G    S   T
Sbjct: 61  ITGYKI--RHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYT 118

Query: 312 TT 313
             
Sbjct: 119 AE 120

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 46/337 (13%), Positives = 88/337 (26%), Gaps = 74/337 (21%)

Query: 431 DQLSDIKVRAGSNF-----------EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 479
           D +  I+V                 +F+ +       T  W         ++       +
Sbjct: 12  DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71

Query: 480 -----KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPED------ 528
                +   L    +   D+G YT  ++N+    K    + V+     +N P        
Sbjct: 72  NRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKL 131

Query: 529 ---DGGAPIEYYMVEKMETDTGKVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRS 580
               G   I    V+     + K  I W        N   V  +       ++      S
Sbjct: 132 YIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG----MNLSFLIALIS 187

Query: 581 DTAQYTVTAT----NSQGKDQVFIEVVVTDKPSAPEGPIQWL--------------LTLT 622
           +   YT   T             + V V   P     P+                 L + 
Sbjct: 188 NNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIP 247

Query: 623 -------------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIR 669
                        +V W I             I+++     +      ++      ++I+
Sbjct: 248 CTVYFSFLMDSRNEVWWTIDG------KKPDDITIDVTINESISHSRTEDETRTQILSIK 301

Query: 670 PLQRSDTA-QYTVTATNSQGKDQVFIEVVVTDKPSAP 705
            +   D    Y   A +++G+     +V    K  AP
Sbjct: 302 KVTSEDLKRSYVCHARSAKGEVAKAAKVKQ--KVPAP 336

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 23/209 (11%)

Query: 516 VLGCSLKWNPPEDDG---GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKI 572
            + C L  +  + +     +     +      D         R  + R++ +       +
Sbjct: 26  RIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK----DVL 81

Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI-----QWLLTLTDVTWE 627
             RP   +DT  YT    N+    +V   + V  K S    P+     +  +        
Sbjct: 82  WFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRIT 141

Query: 628 ISNYLQELHSSLMPI---SLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 684
             N      SS+ P     +    + N   V  +       ++      S+   YT   T
Sbjct: 142 CPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG----MNLSFLIALISNNGNYTCVVT 197

Query: 685 ----NSQGKDQVFIEVVVTDKPSAPEGPI 709
                        + V V   P     P+
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNAVPPV 226

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 341 VELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEK-CAQTEGDTPKGKVLDLIEGNQYE 396
           V++ W  P   +Q+G   +VGY I    + + I ++   +   +  + ++   +      
Sbjct: 36  VDIRWMKPPTKQQDG--ELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCT 93

Query: 397 FRVLAVNKGGPGEPSDPT 414
            R+ AV +GG G  SDP 
Sbjct: 94  VRIAAVTRGGVGPFSDPV 111

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 7/112 (6%)

Query: 209 GKDSVEVEVIVL-DKPS-PPGGPLKVSNVHAEGVTLDWK-VPDDDGGQPIEKYVVD-KMD 264
              S  +        PS  P       N  ++ V + W   P       +  Y +     
Sbjct: 3   SGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQ 62

Query: 265 EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
            A        E     +   +   + N     R+ AV + G    S+P+   
Sbjct: 63  SAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIF 114

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 18/108 (16%), Positives = 27/108 (25%), Gaps = 14/108 (12%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
              P   L+V       + + W           + Y +   +             GPV  
Sbjct: 4   SDVPRD-LEVVAATPTSLLISWDSGRG----SYQYYRITYGETGGNSPVQEFTVPGPVHT 58

Query: 283 LEVEGLIPNHKYKFRVRAVNKQG---------KSEPLTTTASIEAKNP 321
             + GL P   Y   V AV                P++     E   P
Sbjct: 59  ATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKP 106

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 4/90 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
              P   E+       + ++W             Y I   E       +     G     
Sbjct: 4   SDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            +  L  G  Y   V AV    P      T
Sbjct: 60  TISGLKPGVDYTITVYAVTDHKPHADGPHT 89

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 16/90 (17%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG------VWIPVGKTR 108
            + P  LEV         + W+  +       + Y +  Y    G        +P     
Sbjct: 4   SDVPRDLEVVAATPTSLLISWDSGRG----SYQYYRIT-YGETGGNSPVQEFTVPGPVHT 58

Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
                ++GL PG +Y   V A+        
Sbjct: 59  ---ATISGLKPGVDYTITVYAVTDHKPHAD 85

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 44/317 (13%), Positives = 83/317 (26%), Gaps = 53/317 (16%)

Query: 422 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI----ISKDRFKIVN 477
           K ++P        +     G  F      I + + +  +   D  +    I K R  +  
Sbjct: 25  KWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR 84

Query: 478 DDKSTKLKVFDSKRGDSG-IYTLAVKNSWG-TDKGTAKVTVLGCSLKWNPPEDDGGAPIE 535
             K+  L + +    DS   Y   V    G   +G  +  +        P   + G   +
Sbjct: 85  RVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR-KPPSCIPETYELGTHDK 143

Query: 536 YYMVEKMETDTGK--VLIKWIRTNDKRVTIDNVDYFTK---ITIRPLQRSDTAQYTVTAT 590
           Y +         K    I W + N++ + ID   Y      + I   +  D+ +Y     
Sbjct: 144 YGIDLYCGILYAKHYNNITWYK-NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVH 202

Query: 591 NSQGKDQVFIEVVVTDKPSAPEGPIQWL---------------LTLT------------- 622
               + +  I V      +                          +T             
Sbjct: 203 YDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDV 262

Query: 623 DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDT-AQYTV 681
            + WE  +         +   L S   + +  +  +NV                   YT 
Sbjct: 263 LIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENV-----------TEEYIGNTYTC 311

Query: 682 TATNSQGKDQVFIEVVV 698
              N      +   VV+
Sbjct: 312 RGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 21/183 (11%), Positives = 50/183 (27%), Gaps = 11/183 (6%)

Query: 533 PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDT-AQYTVTATN 591
           P     +     +    ++ W +    R  ++       + I     +D+  +Y  T T 
Sbjct: 52  PPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTT 111

Query: 592 SQGK-DQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLM 650
             G   Q  +   +   PS      +                  +  +    ++   +  
Sbjct: 112 KNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYC----GILYAKHYNNI--TWYK 165

Query: 651 NDKRVTIDNVDYFTK---ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG 707
           N++ + ID   Y      + I   +  D+ +Y         + +  I V      +    
Sbjct: 166 NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPS 225

Query: 708 PIQ 710
              
Sbjct: 226 QDH 228

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVF 487
            L D +V  G   E  + V  E      W+ N + +  +D    R++   D K   L   
Sbjct: 14  PLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFS 72

Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
           D  + D G Y +         +  A++ V
Sbjct: 73  DVVQEDRGRYQVITNG----GQCEAELIV 97

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 29/201 (14%), Positives = 49/201 (24%), Gaps = 28/201 (13%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS---- 489
           SD++V    + +      G   P  EW     +  +   +             F S    
Sbjct: 9   SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGIT 68

Query: 490 ----KRGDSGIYTLAVKNSWGTD--KGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
                R D+G YT  V    G +  + +  +TVL                I    V    
Sbjct: 69  FSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV-PPSKPTISVPSSVTIGNRAVLTCS 127

Query: 544 TDTG--KVLIKWIRTNDKRVTIDNVDYFTKI--------------TIRPLQRSDTAQYTV 587
              G       W + +   +   +                        P+   D+ +Y  
Sbjct: 128 EHDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYC 186

Query: 588 TATNSQGKDQVFIEVVVTDKP 608
            A N  G         +    
Sbjct: 187 QAQNGYGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 25/177 (14%), Positives = 48/177 (27%), Gaps = 27/177 (15%)

Query: 551 IKWIRTNDKRVTIDNVDYFTK-------------ITIRPLQRSDTAQYTVTATNSQGKDQ 597
           ++W         +   +                 IT   + R D  +YT   +   G++ 
Sbjct: 33  VEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNY 92

Query: 598 --VFIEVVVTDKPSAPEGPIQWLLTL-TDVTWE---------ISNYLQELHSSLMPISLE 645
             V I + V   PS P   +   +T+                      +   S++    +
Sbjct: 93  GEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK 152

Query: 646 SQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
                 +   TID       +   P+   D+ +Y   A N  G         +    
Sbjct: 153 KTRAFMNSSFTIDPKS--GDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 10/102 (9%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKI------- 475
           V P           V  G+      +   G P     W  + I++++ D  K        
Sbjct: 103 VPPSK-PTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161

Query: 476 -VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
              D KS  L        DSG Y    +N +GT   +    +
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 6/96 (6%)

Query: 219 VLDKPSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQP---IEKYVVDKMDEATGRWTPA 273
           V D  +P   P  ++   +  + V + W        Q    +  Y V     +       
Sbjct: 12  VPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWR-TSFSASAKY 70

Query: 274 GETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
              +         GL PN  Y+F V     +  S  
Sbjct: 71  KSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTW 106

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 4/106 (3%)

Query: 311 TTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSP---IVGYIIEKKEKY 367
           ++       +       P   +      D V ++W             +  Y +  +  +
Sbjct: 5   SSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSF 64

Query: 368 SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
           S    K    +  +       L     YEF V+          S  
Sbjct: 65  SA-SAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMT 109

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 4/71 (5%)

Query: 72  TLKWNKP---KDDGGEPLEGYLVE-KYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRV 127
            + W      K+     +  Y V  +             T       TGL P   Y+F V
Sbjct: 36  RVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFSV 95

Query: 128 KALNKEGESEP 138
                   S  
Sbjct: 96  MVTKNRRSSTW 106

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 54.4 bits (130), Expect = 2e-08
 Identities = 37/216 (17%), Positives = 61/216 (28%), Gaps = 17/216 (7%)

Query: 217 VIVLDKPSPPGGPLKVSNVHAEGVTLD--WKVPDDDG----GQPIEKYVVDKMDEATGRW 270
           V    K +  G P        E  T    W      G    G     Y      E T  W
Sbjct: 21  VNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEW 80

Query: 271 T--PAGETEGPVT-GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGK 327
              P   + G  +             Y  ++ +       +  +    ++   P      
Sbjct: 81  KECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWT 140

Query: 328 PGTPEIKDFDTDFVELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
                +     D +++ W  P   +   G  ++ Y ++ KE     W+        T   
Sbjct: 141 LLNVSLTGIHAD-IQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMM--DPILTTSV 197

Query: 385 KVLDLIEGNQYEFRVLA--VNKGGPGEPSDPTAPHI 418
            V  L    +YE RV +   N G  GE S+     +
Sbjct: 198 PVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTL 233

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 16/128 (12%)

Query: 200 YTVTAENINGK-DSVEVEVIVLDKPSPPGGP-LKVSNVHAEG----VTLDWKVP---DDD 250
           Y +   +  G  D     V  + +P PP      + NV   G    + + W+ P   D  
Sbjct: 107 YCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQ 166

Query: 251 GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA-VNKQGK--- 306
            G  + +Y +   +    +W          T + V  L  + +Y+ RVR+     G    
Sbjct: 167 KGWMVLEYELQYKEVNETKWKM--MDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGE 224

Query: 307 -SEPLTTT 313
            SE L  T
Sbjct: 225 FSEVLYVT 232

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           ++    V  G   +    +  +   +  WL + + +   +R +I  +    +++V DS  
Sbjct: 9   EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE----EVEVQDSVP 63

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            DSG+Y     +  G+D     V V
Sbjct: 64  ADSGLYACVTSSPSGSDTTYFSVNV 88

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
             ++ V+ +  AD+G Y     + +G D+    V V D     
Sbjct: 53  GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
           I W+R         R  I       ++ ++    +D+  Y    ++  G D  +  V V+
Sbjct: 34  INWLRDGVQLAESNRTRITG----EEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89

Query: 606 DKPSAPEGP 614
           D    P GP
Sbjct: 90  DAL--PSGP 96

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
           L    R  I       ++ ++    +D+  Y    ++  G D  +  V V+D    P GP
Sbjct: 43  LAESNRTRITG----EEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL--PSGP 96

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 53.9 bits (129), Expect = 3e-08
 Identities = 37/209 (17%), Positives = 59/209 (28%), Gaps = 34/209 (16%)

Query: 516 VLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKW---------IRTNDKRVTIDNV 566
            L C      PED G   IE+ +         +V+I +               RV   + 
Sbjct: 19  YLPCKFT-LSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSN 77

Query: 567 DYF---TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTL-T 622
           D       I +  LQ SD   Y      + G       + V  KPS     +     +  
Sbjct: 78  DVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGN 137

Query: 623 DVTWE--------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRS 674
           D   +           +  +  S    +       M    +++ N               
Sbjct: 138 DFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNA-----------SSE 186

Query: 675 DTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
            +  Y+ T  N  G DQ  + + V   PS
Sbjct: 187 YSGTYSCTVQNRVGSDQCMLRLDVVP-PS 214

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 47.0 bits (111), Expect = 6e-06
 Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 5/127 (3%)

Query: 586 TVTATNSQGKDQVFIEVVVTDKPSAPEGP-IQWLLTLTDVTWEISNYLQELHSSLMPISL 644
            +     +G+   ++    T  P       I+WL++ +D        +      +   + 
Sbjct: 9   RIEKA--KGET-AYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD-NY 64

Query: 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 704
                      + D       I +  LQ SD   Y      + G       + V  KPS 
Sbjct: 65  YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG 124

Query: 705 PEGPIQI 711
               +  
Sbjct: 125 TRCFVDG 131

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 12/149 (8%)

Query: 470 KDRFKIVNDDKS---TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG---CSLKW 523
           K R    ++D       + V + +  D G Y   VK + G       +TVL     +  +
Sbjct: 69  KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCF 128

Query: 524 NPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTK---ITIRPLQRS 580
               ++ G   +  +  + +  +  +  +W + +D +              I+++     
Sbjct: 129 VDGSEEIGNDFK--LKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSE 186

Query: 581 DTAQYTVTATNSQGKDQVFIEVVVTDKPS 609
            +  Y+ T  N  G DQ  + + V   PS
Sbjct: 187 YSGTYSCTVQNRVGSDQCMLRLDVVP-PS 214

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 21/59 (35%)

Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTL 242
           +  + V   Q +D G Y    +   G  + +  + VL KPS     +  S        L
Sbjct: 83  DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKL 141

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 341 VELAWTPP---EQNGGSPIVGYII---EKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQ 394
           + L WT       N   PI G+ I            +++    EG      +  L     
Sbjct: 21  IMLKWTYIPSSNNNT--PIQGFYIYYRPTDSDNDSDYKR-DVVEGSKQWHMIGHLQPETS 77

Query: 395 YEFRVLAVNKGGPGEPSDP 413
           Y+ ++   N+GG  E S+ 
Sbjct: 78  YDIKMQCFNEGGESEFSNV 96

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 16/101 (15%)

Query: 225 PPGGPLKVSNVHAEGVT-----LDWK-VPDDDGGQPIEKYVV---DKMDEATGRWTPAGE 275
           P  GP      + E V+     L W  +P  +   PI+ + +       +    +     
Sbjct: 4   PITGP---HIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRD-V 59

Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
            EG      +  L P   Y  +++  N+ G    S  +   
Sbjct: 60  VEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICE 100

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 422 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDK 480
           +K S    +      +V  G      + +  +     +WL N   I +S  ++   +   
Sbjct: 12  EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70

Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
              L +      D   Y   V    G +K + ++ V
Sbjct: 71  KRTLTISQCSLADDAAYQCVV----GGEKCSTELFV 102

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            S  G  LK+       + L W             Y +  +++         E       
Sbjct: 9   ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPR----- 63

Query: 283 LEVEGLIPNHKYKFRVRAVNKQG 305
           + +  L P+  Y  RVR +   G
Sbjct: 64  VLLTKLQPDTTYIVRVRTLTPLG 86

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
           +     + ++   +   +EL W           + Y +    +     ++        P+
Sbjct: 9   ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQ-----DEEWHQMVLEPR 63

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDP----TAP 416
             +  L     Y  RV  +   GPG  S      T+P
Sbjct: 64  VLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP 100

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131
            L W   +         Y +   + +           EP + +T L P   Y  RV+ L 
Sbjct: 27  ELTWAGSRPRNPGGNLSYELHVLNQDEEWH---QMVLEPRVLLTKLQPDTTYIVRVRTLT 83

Query: 132 KEGESEP 138
             G    
Sbjct: 84  PLGPGPF 90

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 53.6 bits (128), Expect = 4e-08
 Identities = 22/184 (11%), Positives = 52/184 (28%), Gaps = 15/184 (8%)

Query: 225 PPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
              GP  L       E +   W+     G  P +     ++++   +     +       
Sbjct: 20  AARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79

Query: 283 LEVEGLIPNH------KYKFRVRAVNKQGKSEP-LTTTASIEAKNPFNQPGKPGTPEIKD 335
           +     +P          + RV A +   +    +     +    P     +        
Sbjct: 80  VRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLAD----- 134

Query: 336 FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY 395
            ++  V L W PP +   +  + Y ++          +  +      +  + +L    +Y
Sbjct: 135 -ESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRY 193

Query: 396 EFRV 399
            F V
Sbjct: 194 TFAV 197

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 2/103 (1%)

Query: 200 YTVTAENINGKDSVEVEVIVLD--KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEK 257
             +     +G       + + +      P G +      +  V L W  P +       +
Sbjct: 97  LELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIR 156

Query: 258 YVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
           Y VD             E     T   +  L    +Y F VRA
Sbjct: 157 YEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA 199

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 50.7 bits (121), Expect = 7e-08
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP--SPPGGPLKVSN 234
                  +  L +      + G YT+ A N  G+ S  +    +D P    P  P+  +N
Sbjct: 55  AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTN 114

Query: 235 VHAEGVT 241
             +    
Sbjct: 115 STSGDPV 121

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 446 FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK-------LKVFDSKRGDSGIYT 498
              +V G+P P+  WL N   +           + +         L++      ++G YT
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 499 LAVKNSWGTDKGTAKVTVLGCSLKWNPPE 527
           L   N +G    +     +    ++NP +
Sbjct: 80  LLAANPFGQASASIMAAFMDNPFEFNPED 108

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 2/74 (2%)

Query: 640 MPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
             ++  S           +       + +      +   YT+ A N  G+    I     
Sbjct: 39  SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98

Query: 700 DKP--SAPEGPIQI 711
           D P    PE PI  
Sbjct: 99  DNPFEFNPEDPIPD 112

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 554 IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP--SAP 611
           I T       +       + +      +   YT+ A N  G+    I     D P    P
Sbjct: 47  IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106

Query: 612 EGPI 615
           E PI
Sbjct: 107 EDPI 110

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 52.5 bits (125), Expect = 8e-08
 Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 10/114 (8%)

Query: 201 TVTAENINGKDSVEVEVIVLD---KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEK 257
            V          + ++        +   P   L+V +V      + W++         E+
Sbjct: 81  RVLCREGVRWRVMAIQDFKPFENLRLMAPIS-LQVVHVETHRCNISWEISQA--SHYFER 137

Query: 258 Y----VVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKS 307
           +            T    P    +     + +E L P+ +Y+F+VR    QG+ 
Sbjct: 138 HLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEF 191

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 51.8 bits (124), Expect = 8e-08
 Identities = 26/197 (13%), Positives = 53/197 (26%), Gaps = 58/197 (29%)

Query: 441 GSNFEFDINVI--GEPIPTKEWLCND----ITIISKDRFKIVNDDK-----STKLKVFDS 489
           G +   DI      + I   +W        I    K++      D      +  LK+   
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTV-------------------LGCSLKWNPPEDDG 530
           K  D  IY +++ ++ G +       +                   L C +         
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTD---- 129

Query: 531 GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 590
                               +   + + K + +       ++       S +A++  TA 
Sbjct: 130 ------------------PELNLYQ-DGKHLKLSQ-----RVITHKWTTSLSAKFKCTAG 165

Query: 591 NSQGKDQVFIEVVVTDK 607
           N   K+     V   +K
Sbjct: 166 NKVSKESSVEPVSCPEK 182

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 24/163 (14%)

Query: 545 DTGKVLIKWIRTNDKRVTIDNVDYFTK---ITIRPLQRSDTAQYTVTATNSQGKD--QVF 599
            + K  I   R   +     +     K   + I+ L+  D   Y V+  +++GK+  +  
Sbjct: 38  TSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKI 97

Query: 600 IEVVVTDKPSAPEGPIQWLLTLTDVTWEISN-YLQELHSSLMPISLESQYLMNDKRVTID 658
            ++ + ++ S P+           ++W   N  L     +     L      + K + + 
Sbjct: 98  FDLKIQERVSKPK-----------ISWTCINTTLTCEVMNGTDPEL--NLYQDGKHLKLS 144

Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
                 ++       S +A++  TA N   K+     V   +K
Sbjct: 145 Q-----RVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 28/240 (11%), Positives = 63/240 (26%), Gaps = 19/240 (7%)

Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEG-VTLDWKVPD--DDGGQPIE 256
           YT       G  S     I   K +PP    ++ +    G + L W+ P   D   +   
Sbjct: 12  YTFLISTTFGCTSSSDTEI---KVNPPQD-FEIVDPGYLGYLYLQWQPPLSLDHFKECTV 67

Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
           +Y +   +  +  W         +   +   L    +         +      + ++ + 
Sbjct: 68  EYELKYRNIGSETWKT--IITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAE 125

Query: 317 EAKNPFNQPGKPGTPEI---KDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
                  Q       +      ++  ++  +W P           Y +    +      +
Sbjct: 126 TTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLD--TNYNLFYWYEGLDHALQ 183

Query: 374 CAQTEGDTPKG-----KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYI 428
           C        +        L+  +   +   V   ++  P   S  T       K + P  
Sbjct: 184 CVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVY 243

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 22/221 (9%)

Query: 219 VLDKPSPPGGPLKVSNVHA-----EGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPA 273
                        V ++       + +   WK P          Y +    E        
Sbjct: 127 TYWISPQGIPETXVQDMDCVYYNWQYLLCSWK-PGIGVLLDT-NYNLFYWYEGLDHALQC 184

Query: 274 GE---TEGPVTG--LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
            +    +G   G             +   V   ++         T  ++       P   
Sbjct: 185 VDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVY- 243

Query: 329 GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLD 388
                    +  ++L W+ P     +    Y IE +E  + +         +     +  
Sbjct: 244 --LTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVT----ATVENETYTLKT 297

Query: 389 LIEGNQYEFRV---LAVNKGGPGEPSDPTAPHIARAKKVSP 426
             E  Q  F V   + +     G  S+ +       + +S 
Sbjct: 298 TNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSK 338

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 26/202 (12%), Positives = 56/202 (27%), Gaps = 50/202 (24%)

Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN-----------------D 478
           +  + G   E       +      W  ++   I  ++   +                  D
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDG-------- 530
             +  L + + K  DS  Y   V++     K   ++ V G +   +     G        
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLVFGLTANSDTHLLQGQSLTLTLE 120

Query: 531 --GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 588
                                 ++      K +          +++  L+  D+  +T T
Sbjct: 121 SPPGS--------------SPSVQCRSPRGKNIQGGKT-----LSVSQLELQDSGTWTCT 161

Query: 589 ATNSQGKDQVFIEVVVTDKPSA 610
              +Q K +  I++VV     A
Sbjct: 162 VLQNQKKVEFKIDIVVLAFQKA 183

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 48.8 bits (116), Expect = 9e-07
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
           SD  +  G +    +       P+ +            R K +   K+  L V   +  D
Sbjct: 105 SDTHLLQGQSLTLTLESPPGSSPSVQCR--------SPRGKNIQGGKT--LSVSQLELQD 154

Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLG 518
           SG +T  V  +    +    + VL 
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIVVLA 179

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 41/160 (25%)

Query: 555 RTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPSAPEG 613
           R + +R   D  ++   + I+ L+  D+  Y     + + + Q+    +         +G
Sbjct: 55  RADSRRSLWDQGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQG 112

Query: 614 PIQWLLTLT---------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFT 664
                LTLT          V                      + +   K +++  +    
Sbjct: 113 QS---LTLTLESPPGSSPSVQCRSPR---------------GKNIQGGKTLSVSQL---- 150

Query: 665 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 704
                  +  D+  +T T   +Q K +  I++VV     A
Sbjct: 151 -------ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 341 VELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
           + + W PP    QNG   I GY I  ++             G      +  L  G +Y F
Sbjct: 35  IMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNF 92

Query: 398 RVLAVNKGGPGEPSDPT 414
           RV A+   G G  +D  
Sbjct: 93  RVAALTINGTGPATDWL 109

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 9/130 (6%)

Query: 209 GKDSVEVEVIVL-DKPS-PPGGPLKVSNVHAEGVTLDWKVPDDDG--GQPIEKYVVDKMD 264
              S +V V  L D PS  P   L +   +++ + + W+ P      GQ I  Y +    
Sbjct: 3   SGSSGDVAVRTLSDVPSAAPQN-LSLEVRNSKSIMIHWQPPAPATQNGQ-ITGYKIRYRK 60

Query: 265 EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTTASIEAKNP 321
            +           G      +EGL    +Y FRV A+   G    ++ L+        + 
Sbjct: 61  ASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDE 120

Query: 322 FNQPGKPGTP 331
              P   G  
Sbjct: 121 TRVPEVSGPS 130

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 32/295 (10%), Positives = 70/295 (23%), Gaps = 46/295 (15%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
            ++ +   S F    +          W         ++  K  +   S+ L + +    D
Sbjct: 8   PELVLNVSSTFVLTCSGSAPV----VWE-RMSQEPPQEMAKAQDGTFSSVLTLTNLTGLD 62

Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM------ETDTG 547
           +G Y     +S G +    K   +           +    +  ++ E             
Sbjct: 63  TGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDP 122

Query: 548 KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 607
           ++++              V Y  +         +   Y    T    +       V   +
Sbjct: 123 QLVVTLHEKKGDVAL--PVPYDHQRGF--SGIFEDRSYICKTTIGDREVDSDAYYVYRLQ 178

Query: 608 PSAPEGPIQWL---------LTLT---------DVTWEISNYLQELHSSLMPISLESQYL 649
            S+    +  +         +TL          +  W             +   L     
Sbjct: 179 VSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPY 238

Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV--FIEVVVTDKP 702
                + I +            +  D+  YT   T S    Q    I + V +  
Sbjct: 239 HIRSILHIPSA-----------ELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 11/122 (9%)

Query: 401 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 460
                   + SD    +  +   ++  +N        VR G N      VIG  +   EW
Sbjct: 160 TTIGDREVD-SDAYYVYRLQVSSINVSVNA---VQTVVRQGENITLMCIVIGNEVVNFEW 215

Query: 461 LCND------ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514
                     +  ++     +    +S  L +  ++  DSG YT  V  S    +    +
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSI-LHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274

Query: 515 TV 516
            +
Sbjct: 275 NI 276

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 43/321 (13%), Positives = 80/321 (24%), Gaps = 67/321 (20%)

Query: 410 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS 469
           P +P+ P I               S++ V AG                       +    
Sbjct: 7   PGEPSPPSI-----------HPAQSELIVEAGDTLSLTCIDPDF-----------VRWTF 44

Query: 470 KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDD 529
           K  F  + ++K  +     ++   +G YT +  N   +   +  V V   +  +      
Sbjct: 45  KTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFLVGLPL 101

Query: 530 GGAPIEYYMVEKMETDTGKVLIKWIRTN------DKRVTIDNVDYFTKITIRPLQRSDTA 583
            G      +V    TD        I  +      D     +     T   ++        
Sbjct: 102 FGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRA--YHRL 159

Query: 584 QYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGPIQWL------------LTLT-------- 622
                A             + V +   A   P+  +             T+         
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLKVREAIKAI--PVVSVPETSHLLKKGDTFTVVCTIKDVST 217

Query: 623 --DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 680
             +  W   N               +Q   N       N +    +TI   +  D+  + 
Sbjct: 218 SVNSMWLKMN---------PQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFM 268

Query: 681 VTATNSQGKDQVFIEVVVTDK 701
             A N+ G   V   + V +K
Sbjct: 269 CYANNTFGSANVTTTLKVVEK 289

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 15/95 (15%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           P+ P   L  +      +TL W    D+ G  +  Y V          T  G      T 
Sbjct: 4   PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDVYNGTALAT--TVTG------TT 52

Query: 283 LEVEGLIPNHKYKFRVRAVNKQG----KSEPLTTT 313
             + GL  +  Y F V+A +  G     S  ++  
Sbjct: 53  ATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVK 87

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 9/79 (11%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
           L  +       TL W    D+ G  + GY V                      ++GL   
Sbjct: 10  LASTAQTTSSITLSWTASTDNVG--VTGYDVYNGT------ALATTVTGTTATISGLAAD 61

Query: 121 HEYKFRVKALNKEG-ESEP 138
             Y F VKA +  G  S  
Sbjct: 62  TSYTFTVKAKDAAGNVSAA 80

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 12/77 (15%), Positives = 18/77 (23%), Gaps = 4/77 (5%)

Query: 341 VELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
           + + W      +    +    Y +  K        K       T    V  L     YEF
Sbjct: 25  IRITWADNSLPKHQKITDSRYYTVRWKTNIPA-NTKYKNANATTLSYLVTGLKPNTLYEF 83

Query: 398 RVLAVNKGGPGEPSDPT 414
            V+          S   
Sbjct: 84  SVMVTKGRRSSTWSMTA 100

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 18/99 (18%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE---KYVVDKMDEATGRWTPAGETE 277
             P  P   ++ S +  + + + W        Q I     Y V        RW       
Sbjct: 6   SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTV--------RWKTNIPAN 57

Query: 278 G-----PVTGLE--VEGLIPNHKYKFRVRAVNKQGKSEP 309
                   T L   V GL PN  Y+F V     +  S  
Sbjct: 58  TKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTW 96

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 19/90 (21%), Positives = 25/90 (27%), Gaps = 9/90 (10%)

Query: 57  PEGP---LEVSNIHKDGCTLKWNKP---KDDGGEPLEGYLVE--KYDPETGVWIPVGKTR 108
           P  P   ++ S +  D   + W      K         Y V      P    +     T 
Sbjct: 8   PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANAT- 66

Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
                VTGL P   Y+F V        S  
Sbjct: 67  TLSYLVTGLKPNTLYEFSVMVTKGRRSSTW 96

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 33/260 (12%), Positives = 71/260 (27%), Gaps = 41/260 (15%)

Query: 470 KDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVKN-SWGTDKGTAKVTVLGCSLKWNPPE 527
           ++R + +    +   +++   +  D G+Y         G  +    +TV+       P  
Sbjct: 79  RERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA-----KPTN 133

Query: 528 DDGGAPIEYYMVEKMETDTGKV-----------LIKWIR-------TNDKRVTIDNVDYF 569
              G        +  +                 ++ W           + R     V   
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVI 193

Query: 570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI--QWLLTLTDVTWE 627
           ++  + P + +              + +  + + V  +P          W L   DV   
Sbjct: 194 SRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLT 253

Query: 628 ---ISNYLQELHSSLMPISLESQYLMNDKRVTID-NVDYFTKITIRPLQRSDTAQYTVTA 683
               +N          P + E  +   +  +         T     P+  S    Y   A
Sbjct: 254 CKADAN----------PPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEA 303

Query: 684 TNSQGKDQVFIEVVVTDKPS 703
           TN  G     +EV +T+  +
Sbjct: 304 TNPIGTRSGQVEVNITEAAA 323

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 28/183 (15%), Positives = 42/183 (22%), Gaps = 46/183 (25%)

Query: 452 GEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFDSKRGDSGIYTLAVKNSWGTDK 509
           G+P     W             +  N   +   + ++  S+          V       K
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221

Query: 510 GTAKVTV-----------------------LGCSLKWNPPEDDGGAPIEYYMVEKMETDT 546
            +  + V                       L C    NPP        EY          
Sbjct: 222 ESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPP------ATEY---------- 265

Query: 547 GKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
                 W   N            T     P+  S    Y   ATN  G     +EV +T+
Sbjct: 266 -----HWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE 320

Query: 607 KPS 609
             +
Sbjct: 321 AAA 323

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 341 VELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
            ELAW PP   E+NG   I+ Y +  ++  S       Q      +  +  L     Y+ 
Sbjct: 25  TELAWDPPVLAERNG--RIISYTVVFRDINSQQEL---QNITTDTRFTLTGLKPDTTYDI 79

Query: 398 RVLAVNKGGPGEPSDPT 414
           +V A    G G  S   
Sbjct: 80  KVRAWTSKGSGPLSPSI 96

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 27/104 (25%)

Query: 225 PPGGPLKVSNVHAEGVT-----LDWKVPDDDG--GQPIEKYVVDKMDEATGRWTPAGETE 277
           P G P    N+H  G+T     L W  P      G+ I  Y V         +      +
Sbjct: 8   PSGFP---QNLHVTGLTTSTTELAWDPPVLAERNGR-IISYTV--------VFRDINSQQ 55

Query: 278 -----GPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
                   T   + GL P+  Y  +VRA   +G    S  + + 
Sbjct: 56  ELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSR 99

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW-LCND--ITIISKDRFKIVNDDKST 482
             I   +   + V  G   +F     G+P P   W       ++  S  R  +  D    
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD---G 441

Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            L+V  ++  D+G Y     N+ G D   A + V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 4/75 (5%)

Query: 341 VELAWTPPEQNGGSPIVGYIIE-KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
           + + W          +  Y I               Q        ++ +L+   QY   V
Sbjct: 35  ISVHWEHV-LEK--IVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEV 91

Query: 400 LAVNKGGPGEPSDPT 414
            A N  G G PSD  
Sbjct: 92  GACNSAGCGPPSDMI 106

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 10/103 (9%)

Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
           ++  P+ P G   V +       L W             Y V +  ++ G +T    T  
Sbjct: 1   MVSAPAFPTGLSAVLDSSGNTANLTWNAAPGANS-----YNVKRSTKSGGPYTTIA-TNI 54

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP----LTTTASIE 317
             T     G+    KY + V AV+   ++      +     +E
Sbjct: 55  TSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQYPKLE 97

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 72  TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR-EPEMDVTGLTPGHEYKFRVKAL 130
            L WN            Y V++     G +  +           TG+  G +Y + V A+
Sbjct: 23  NLTWNAAPG-----ANSYNVKRSTKSGGPYTTIATNITSTNYTDTGVATGTKYYYVVSAV 77

Query: 131 NKEGESEP 138
           +   E+  
Sbjct: 78  SNGVETLN 85

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 17/143 (11%), Positives = 35/143 (24%), Gaps = 28/143 (19%)

Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWL------LTLT---- 622
            +     S    Y       + +      + V    +      +        LT+T    
Sbjct: 70  VVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVN 129

Query: 623 -----DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTA 677
                 V W            LMP  +E      +  V  +     +      L +    
Sbjct: 130 AFPHPHVQW------------LMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHL 177

Query: 678 QYTVTATNSQGKDQ-VFIEVVVT 699
             T    N + +   V++   ++
Sbjct: 178 PVTCVGKNDKEEAHGVYVSGYLS 200

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 23/199 (11%), Positives = 48/199 (24%), Gaps = 51/199 (25%)

Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 489
           +    + +V  G     D+  I  P                  F I     +  L V  +
Sbjct: 30  KLGPGEEQVLIGR-MHHDVIFIEWPFRG--------------FFDIHRSANTFFLVVTAA 74

Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
                G Y   +K           ++V+        P             E+ +     V
Sbjct: 75  NISHDGNYLCRMKLGETEVTKQEHLSVV-------KP------LTLSVHSERSQFPDFSV 121

Query: 550 L-------------IKWIRTN---------DKRVTIDNVDYFTKITIRPLQRSDTAQYTV 587
           L             ++W+            +  V  +     +      L +      T 
Sbjct: 122 LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181

Query: 588 TATNSQGKDQ-VFIEVVVT 605
              N + +   V++   ++
Sbjct: 182 VGKNDKEEAHGVYVSGYLS 200

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 14/98 (14%), Positives = 20/98 (20%), Gaps = 4/98 (4%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND----ITIISKDRFKIVNDD 479
           V P          +    S       V   P P  +WL  +        +        D 
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161

Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
             +        +      T   KN      G      L
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGYL 199

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 39/261 (14%), Positives = 70/261 (26%), Gaps = 38/261 (14%)

Query: 463 NDITIISKDRFKIVNDDKSTK-----LKVFDSKRGDSGIYT-LAVKNSWGTDKGTAKVTV 516
              +     R + V      +     L++F  +  D G YT L V    G+      + V
Sbjct: 55  QGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114

Query: 517 LGCSLKWNPPEDDGGAPIEYYMVEKM-----ETDTGK--VLIKWIR--------TNDKRV 561
           L        P++           E +      +  G+    I W          +     
Sbjct: 115 LA------KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGF 168

Query: 562 TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD----QVFIEVVVTDKPSAPEGPIQW 617
               V   +   + P  + D    T    +   +      V + V    + S       W
Sbjct: 169 LSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNW 228

Query: 618 LLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTA 677
            L   + T           +   P      +      +    V    ++ IRP+ +    
Sbjct: 229 YLGQNEATLT-------CDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINT 281

Query: 678 QYTVTATNSQGKDQVFIEVVV 698
                 TN+ G  Q  + V V
Sbjct: 282 TLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 23/161 (14%), Positives = 42/161 (26%), Gaps = 10/161 (6%)

Query: 452 GEPIPTKEWLCNDITIISKDRFKIVNDDKST---KLKVFDSKRGDSGIYTLAVKNSWGT- 507
           G P     W  +   + +  +         T      +  S + D    T  V++     
Sbjct: 144 GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK 203

Query: 508 -DKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGK---VLIKWIRTNDKRVTI 563
               T  +TV           D+     +       +            W       +  
Sbjct: 204 PQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR-SNPEPTGYNWST-TMGPLPP 261

Query: 564 DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
             V    ++ IRP+ +          TN+ G  Q  + V V
Sbjct: 262 FAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 12/84 (14%)

Query: 341 VELAWTPP---EQNGGSPIVGYII-------EKKEKYSPIWEKCAQTEGDTPKGKVLDLI 390
            E+ W P       G   + GY I         K     I +K    +G    G +  L 
Sbjct: 31  AEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLE 88

Query: 391 EGNQYEFRVLAVNKGGPGEPSDPT 414
             + Y   V  VN  G G  S   
Sbjct: 89  PFSHYTLNVRVVNGKGEGPASPDR 112

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 47.7 bits (113), Expect = 8e-07
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPI---PTKEWLCN---------DITIISKDRFKIVNDD 479
           +     V+ G +  F   V  E +   PT +W               +  K+ F+  +  
Sbjct: 13  KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72

Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            + ++++  +K   +G Y   V      D  +  + V
Sbjct: 73  YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 109

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 8/83 (9%), Positives = 24/83 (28%), Gaps = 7/83 (8%)

Query: 623 DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 682
            + W    ++     +   + L+  +  + +        Y  ++ I   + +    Y   
Sbjct: 41  TIKWFKGKWMDLASKAGKHLQLKETFERHSRV-------YTFEMQIIKAKDNFAGNYRCE 93

Query: 683 ATNSQGKDQVFIEVVVTDKPSAP 705
            T     D    ++ V +     
Sbjct: 94  VTYKDKFDSCSFDLEVHESTGTT 116

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 47.5 bits (113), Expect = 8e-07
 Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTP-PEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
           P +P    + +     V L W         S + GY +     Y    +   Q       
Sbjct: 18  PSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKV----FYRTSSQNNVQVLNTNKT 73

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
              L L     Y   V A   GG G  S+ 
Sbjct: 74  SAELVLPIKEDYIIEVKATTDGGDGTSSEQ 103

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 326 GKPGTPEIKDFDTDFVELAWTPP---EQNGGSPIVGYII----EKKEKYSPIWEKCAQTE 378
           G P    ++   +  +++ W  P    QNG   I GY I                  +  
Sbjct: 17  GPPMDVTLQPVTSQSIQVTWKAPKKELQNG--VIRGYQIGYRENSPGSNGQYSIVEMKAT 74

Query: 379 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           GD+    + +L +  QY   V A N+ G G  S   
Sbjct: 75  GDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 110

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 26/171 (15%), Positives = 47/171 (27%), Gaps = 40/171 (23%)

Query: 549 VLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD---QVFIEVVVT 605
              +W++     +  D +    K   +        +Y+             Q+     V 
Sbjct: 30  TGHRWLK-GGVVLKEDALPG-QKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVK 87

Query: 606 DKPS---APEG--------------PIQWLLTLTDVTWEISNYLQELHSSLMPISLESQY 648
              S     EG                 W        W      +   S    +   S+ 
Sbjct: 88  AVKSSEHINEGETAMLVCKSESVPPVTDW-------AW-----YKITDSEDKALMNGSE- 134

Query: 649 LMNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNSQGKDQVFIEVVV 698
                R  + +    +++ I  L   +D  QY    T+S+G DQ  I + V
Sbjct: 135 ----SRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 28/192 (14%), Positives = 54/192 (28%), Gaps = 31/192 (16%)

Query: 431 DQLSDIKVRAGSNFEFDINVIGEPIPTKE--WLCNDITIISKDRFKIVNDDKSTKLKVFD 488
             +       GS      ++           WL   + +         +     K +   
Sbjct: 3   GTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE-------DALPGQKTEFKV 55

Query: 489 SKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPED---------------DGGAP 533
                 G Y+           GTA + + G                         +   P
Sbjct: 56  DSDDQWGEYSCVFLPE---PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPP 112

Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNS 592
           +  +   K+     K L+     ++ R  + +    +++ I  L   +D  QY    T+S
Sbjct: 113 VTDWAWYKITDSEDKALMN---GSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 169

Query: 593 QGKDQVFIEVVV 604
           +G DQ  I + V
Sbjct: 170 KGSDQAIITLRV 181

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           +     V  G        V  +P P   W+ + + +             S  L + +   
Sbjct: 16  EPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLILPEIGP 66

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            D G Y+    +S    + +  V++
Sbjct: 67  QDQGTYSCVATHSSHGPQESRAVSI 91

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 13/98 (13%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR-------------FKIVND 478
                +   G + E     +G P+P  +W                             + 
Sbjct: 27  APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQ 86

Query: 479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
             ++ + +      D+G Y     N    +  T    V
Sbjct: 87  HAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 18/236 (7%)

Query: 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVH-----AEGVTLDWKVPDDDGGQPI 255
           T+   N N   + +  +  +   S     L +  V       E +   W+   +     +
Sbjct: 9   TILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNL 68

Query: 256 EKYVVDKM--DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
             +   K   ++   + +    +E   +G +++    +    F V+  + +    P    
Sbjct: 69  TLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPRE---PRRQA 125

Query: 314 ASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
             +        P  P    +       +EL W        +  + ++++ +  +   W +
Sbjct: 126 TQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTE 182

Query: 374 CAQTEGDTPKGKVLDLIEGNQYEFRV---LAVNKGGPGEPSDPTAPHIARAKKVSP 426
             Q+     K  +  +    +Y FRV        G     S+ + P    +     
Sbjct: 183 --QSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSKE 236

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 200 YTVTAENINGKDSVEVEVIVLD---KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE 256
           + V  ++         +++ L     P  P   L +  +    + L+W     +      
Sbjct: 111 FVVQLQDPREPRRQATQMLKLQNLVIPWAPEN-LTLHKLSESQLELNWNNRFLNHCL--- 166

Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
           +++V    +    WT             +  +    +Y FRVR+
Sbjct: 167 EHLVQYRTDWDHSWTEQSVDYR--HKFSLPSVDGQKRYTFRVRS 208

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
           L +  + +    L WN    +    LE +LV+        W         +  +  +   
Sbjct: 143 LTLHKLSESQLELNWNNRFLN--HCLE-HLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQ 199

Query: 121 HEYKFRVKA 129
             Y FRV++
Sbjct: 200 KRYTFRVRS 208

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 11/134 (8%)

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE 342
           L ++ ++    Y   + A  +         +  +       +P  PG   +    +D + 
Sbjct: 63  LLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHV-------KPRAPGNLTVHTNVSDTLL 115

Query: 343 LAWTPP--EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL--DLIEGNQYEFR 398
           L W+ P    N     + Y +    +  P   +        P  ++    L  G  Y  R
Sbjct: 116 LTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRAR 175

Query: 399 VLAVNKGGPGEPSD 412
           V A  +      S+
Sbjct: 176 VRAWAQAYNTTWSE 189

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 8/114 (7%)

Query: 201 TVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE--K 257
            + A        S +    V  KP  PG  L V    ++ + L W  P            
Sbjct: 77  DLWAGQQLLWKGSFKPSEHV--KPRAPGN-LTVHTNVSDTLLLTWSNPYPPDNYLYNHLT 133

Query: 258 YVVD--KMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
           Y V+    ++             P   +    L     Y+ RVRA  +   +  
Sbjct: 134 YAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTW 187

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 341 VELAWTPP---EQNGGSPIVGYII--EKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY 395
           V ++W PP    +NG   I  Y +  E  +              +     ++ L +  +Y
Sbjct: 35  VRVSWVPPPADSRNG--VITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEY 92

Query: 396 EFRVLAVNKGGPGEPSDPT 414
              V A    GPG  S P 
Sbjct: 93  RVWVRAHTDVGPGPESSPV 111

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 24/196 (12%), Positives = 53/196 (27%), Gaps = 35/196 (17%)

Query: 432 QLSDIKVRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKI---------VNDDKS 481
              +I    G          +    P   WL +   +   D  +           +    
Sbjct: 8   NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVV 67

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
           ++L++   +  D+G Y   V     T       V + G       PED            
Sbjct: 68  SQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPED----------RT 117

Query: 541 KMETDTGK-----------VLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTA 589
                              V + W++ +   +      +  + ++     + T+ ++  A
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLATAP-GHGPQRSLHVPGLNKTSSFSCEA 175

Query: 590 TNSQGKDQ-VFIEVVV 604
            N++G        + V
Sbjct: 176 HNAKGVTTSRTATITV 191

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPI---PTKEWLCNDIT---------IISKDRFKIVNDD 479
           +  D +V  G +  F   V G  +   P  +W               +   D +   +  
Sbjct: 10  RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69

Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
              +L + D++   +G Y   V      D     +TV
Sbjct: 70  YLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens} Length = 104

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 7/93 (7%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
                  +   N+ A  +TL WKV D++       Y +    E         E       
Sbjct: 8   AIQVFD-VTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDSSNLNVSEPR----- 60

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
             + GL  +  Y   V  V    +  P      
Sbjct: 61  AVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVH 93

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 39/282 (13%), Positives = 69/282 (24%), Gaps = 64/282 (22%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
             + V           V+  P  +  +W  N     +               ++  +   
Sbjct: 9   PWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP----------SYRITSASVN 58

Query: 493 DSGIYTLAVKNSWGTDKGTAKVT-------------------VLGCSLKWNPPEDDGGAP 533
           DSG Y      S  +D    ++                     L C    +    +    
Sbjct: 59  DSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYN---- 114

Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 593
                            + + R N K     + +  + +TI     S    Y  +     
Sbjct: 115 -----------------VLYYR-NGKAFKFFHWN--SNLTILKTNISHNGTYHCSGMGKH 154

Query: 594 GKDQVFIEVVVTDKPSAPEGPIQWLLTLTD---VTWEISNYLQ-ELHSSLMPISLESQYL 649
                 I V V +   AP         L +   VT      L  E    L    L+  + 
Sbjct: 155 RYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVT------LSCETKLLLQRPGLQLYFS 208

Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 691
                 T+   +  ++  I   +R D+  Y   A    G   
Sbjct: 209 FYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVL 250

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNV 235
           +  +   +N+ L +     +  G Y  +    +   S  + V V +    P     V++ 
Sbjct: 122 KAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSP 181

Query: 236 HAEG--VTL 242
             EG  VTL
Sbjct: 182 LLEGNLVTL 190

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 47.6 bits (112), Expect = 6e-06
 Identities = 17/158 (10%), Positives = 45/158 (28%), Gaps = 25/158 (15%)

Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG------------------ 613
           + ++ +Q++D   YT           +   V +   P  P                    
Sbjct: 86  LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQST 145

Query: 614 ------PIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKIT 667
                  + W+ +    T E +    + +          ++          + +  + I 
Sbjct: 146 EEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS-IK 204

Query: 668 IRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
           ++ ++ SD   YT +    + + +  I + V       
Sbjct: 205 LQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 28/234 (11%), Positives = 68/234 (29%), Gaps = 60/234 (25%)

Query: 434 SDIKVRAGSNFEFDINV---IGEPIPTKEWLCNDITIIS------------------KDR 472
             ++V  G +      V     + +   +WL +     +                  ++R
Sbjct: 13  PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNR 72

Query: 473 FKIVNDDKSTK--LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV-------------- 516
             +V D       L + D ++ D GIYT  ++    +      V +              
Sbjct: 73  SHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRV 132

Query: 517 -----LGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTK 571
                + CS++    +       +   +    + T +  +    +N +     ++  F  
Sbjct: 133 GDTTQMRCSIQSTEEKR----VTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRN 188

Query: 572 --------------ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
                         I ++ ++ SD   YT +    + + +  I + V       
Sbjct: 189 RVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 46.7 bits (110), Expect = 8e-06
 Identities = 31/172 (18%), Positives = 52/172 (30%), Gaps = 32/172 (18%)

Query: 552 KWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS-- 609
           K    +  R++ D+   FT   I     S        A  +    Q  + +VV       
Sbjct: 49  KRFVPDGNRISWDSKKGFT---IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 105

Query: 610 ----APEGPIQWL----LTLT-----------DVTWEISNYLQELHSSLMPISLESQYLM 650
               +P   I+      L L            D  WE   Y    H     ++ + +   
Sbjct: 106 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE---YPSSKHQHKKLVNRDLKTQS 162

Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
             +     +      +TI  + RSD   YT  A++     +    V V + P
Sbjct: 163 GSEMKKFLST-----LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 26/208 (12%), Positives = 51/208 (24%), Gaps = 28/208 (13%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 483
           ++   ++  +  I                  +               D  +I  D K   
Sbjct: 7   IASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSK-KG 65

Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
             +       +G+     K +  + +    + V+          D   +P     +   E
Sbjct: 66  FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVG----YRIYDVVLSPSHGIELSVGE 121

Query: 544 TDT----------GKVLIKWIRTNDKRVTIDNVDYFTKI-------------TIRPLQRS 580
                          +   W   + K      V+   K              TI  + RS
Sbjct: 122 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 181

Query: 581 DTAQYTVTATNSQGKDQVFIEVVVTDKP 608
           D   YT  A++     +    V V + P
Sbjct: 182 DQGLYTCAASSGLMTKKNSTFVRVHEDP 209

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPI----WEKCAQTEGDTPKGKVLDLIEGNQYE 396
           V++ WT   Q     I GY +  ++         W+             +++L +G  YE
Sbjct: 32  VQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89

Query: 397 FRVLAVNKGGPGEPSDP 413
            +V        G  S+ 
Sbjct: 90  IKVRPYFNEFQGMDSES 106

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 9/81 (11%)

Query: 240 VTLDWKVPDDDGGQPIEKYVV----DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYK 295
           V + W V      Q I+ Y V        +AT  W              +  L     Y+
Sbjct: 32  VQVTWTVDRQP--QFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89

Query: 296 FRVRAVNKQGK---SEPLTTT 313
            +VR    + +   SE  T  
Sbjct: 90  IKVRPYFNEFQGMDSESKTVR 110

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 8/73 (10%)

Query: 72  TLKWNKPKDDGGEPLEGYLVE----KYDPETGVWIP--VGKTREPEMDVTGLTPGHEYKF 125
            + W   +      ++GY V          T  W         E    +  L  G  Y+ 
Sbjct: 33  QVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEI 90

Query: 126 RVKALNKEGESEP 138
           +V+    E +   
Sbjct: 91  KVRPYFNEFQGMD 103

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCND--ITIISKDRFKI---- 475
              P I+           G   +    +   P P +  W   +  +   +  R+ +    
Sbjct: 12  NGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 69

Query: 476 VNDDKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTVLG 518
             +   + L + +  R D   IY     NS+G+D    ++   G
Sbjct: 70  TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 20/168 (11%), Positives = 49/168 (29%), Gaps = 30/168 (17%)

Query: 560 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE---VVVTDKPSAPEGPIQ 616
           R ++ N+   T + +  +   D  +Y         + +  ++   VV+      P   + 
Sbjct: 81  RASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVH 139

Query: 617 WL------------LTLT---------DVTWEISNYLQELHSSLMPISLESQYLMNDKRV 655
                         +T+T         +VTW       E + +     L ++        
Sbjct: 140 VSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWF 199

Query: 656 TID-----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
           + +     +      + IR  + +D  +        QG+        +
Sbjct: 200 SSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 12/114 (10%), Positives = 26/114 (22%), Gaps = 21/114 (18%)

Query: 425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI----------------- 467
           S  ++      ++V  G++                W                        
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194

Query: 468 ----ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
                S +     +   +  L +  +K  D+G     +    G        T+L
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL 248

>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor); helical bundle, fibronectin type III domain, beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A {Homo sapiens} PDB: 3og4_B* Length = 226

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 16/186 (8%)

Query: 240 VTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE-----VEGLIPNHKY 294
           V L W  P     Q +  +V  +      RW    E  G    L      ++     +K+
Sbjct: 21  VYLTWL-PGLGNPQDVTYFVAYQSSPTRRRWREVEECAG-TKELLCSMMCLKKQDLYNKF 78

Query: 295 KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK---DFDTDFVELAWTPPEQN 351
           K RVR V+   KS  + +    E  +   +  +P  P +      +       +  P   
Sbjct: 79  KGRVRTVSPSSKSPWVES----EYLDYLFE-VEPAPPVLVLTQTEEILSANATYQLPPCM 133

Query: 352 GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
               +  Y +   ++ +        T    P    L       +      +      + S
Sbjct: 134 PPLDL-KYEVAFWKEGAGNKTLFPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYS 192

Query: 412 DPTAPH 417
             + P 
Sbjct: 193 KFSKPT 198

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W R ++ ++    +D+   +TIR +Q SD   Y  T +N    DQ    + V
Sbjct: 43  LVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 15/108 (13%)

Query: 410 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITII 468
            + P+ P           +  ++     VR G++  F        P  T  W       +
Sbjct: 3   LAAPSKP---------IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 53

Query: 469 SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
              R    N      L + + +  D+G Y     N +  D+GTA + V
Sbjct: 54  P-SRAMDFNGI----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
           + +D+N  L +R  Q +DAG Y  T  N+   D     + V
Sbjct: 56  RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R* Length = 211

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 25/210 (11%), Positives = 51/210 (24%), Gaps = 29/210 (13%)

Query: 225 PPGGPLKVSNVHAE----GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE---TE 277
           P      + +V  +       L W    +        Y ++        W          
Sbjct: 1   PEDPSDLLQHVKFQSSNFENILTWDSGPEGTPDT--VYSIEYKTYGERDWVAKKGCQRIT 58

Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK-DF 336
                L VE       Y  RV AV+  G+S     T   +  +          P++    
Sbjct: 59  RKSCNLTVETGNLTELYYARVTAVSAGGRSA----TKMTDRFSSLQH-TTLKPPDVTCIS 113

Query: 337 DTDFVELAWTPPE----QNGGSPIVGYIIEKKEKY------SPIWEKCAQTEGDTPKGKV 386
               +++   P         G  +    I     Y      +  ++      G   + + 
Sbjct: 114 KVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMH--LGGKQREYEF 171

Query: 387 LDLIEGNQYEFRVLAVNKGGP--GEPSDPT 414
             L    ++   ++ +         P    
Sbjct: 172 FGLTPDTEFLGTIMILVPTWAKESAPYMCR 201

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 17/140 (12%)

Query: 285 VEGLIPNHKYKFRVRAVNKQGK--SEPLTTTASIEAKNPFNQPGKPGTPEI----KDFDT 338
            + +     Y   +R  +  G   S P             +   KP  P         + 
Sbjct: 73  FQPIFLLSGYTMWIRINHSLGSLDSPPTCVL--------PDSVVKPLPPSSVKAEITINI 124

Query: 339 DFVELAWTPPEQNGGSPIVGYIIE-KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
             ++++W  P        + + I          W+     +  +    +        Y  
Sbjct: 125 GLLKISWEKPVFPEN--NLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAV 182

Query: 398 RVLAVNKGGPGEPSDPTAPH 417
           +V      G G  S+ + P 
Sbjct: 183 QVRCKRLDGLGYWSNWSNPA 202

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 43.5 bits (102), Expect = 8e-05
 Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 14/125 (11%)

Query: 200 YTVTAENINGK-DSVEVEVIVLD--KPSPPGGPLKVSNVHAEG-VTLDWKVPDDDGGQPI 255
             +   +  G  DS    V+     KP PP   +K       G + + W+ P        
Sbjct: 84  MWIRINHSLGSLDSPPTCVLPDSVVKPLPPSS-VKAEITINIGLLKISWEKPVFPEN--N 140

Query: 256 EKYVVD-KMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK------SE 308
            ++ +   +     +W      +     + +        Y  +VR     G       S 
Sbjct: 141 LQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSN 200

Query: 309 PLTTT 313
           P  T 
Sbjct: 201 PAYTV 205

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 42/294 (14%), Positives = 72/294 (24%), Gaps = 61/294 (20%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLE-GYLVEKYDPETGVWIPVGKTREPEMD 113
           L P     +         L+W    D     +   Y V+   P+   +       +    
Sbjct: 12  LLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESK---A 68

Query: 114 VTGLTPGHEYKFRVKALNKEGE--SEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCG 171
           VT L  G     R    N      S             P +   +++   +    N    
Sbjct: 69  VTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRL 128

Query: 172 SG---------MVRKVQHLDYNTKLGVRMAQRA--------------------------- 195
                      MV      D    L  R                                
Sbjct: 129 RSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSK 188

Query: 196 DAGFYTVTAENINGKDSVE-----VEVIVLDKPSPPGGPLKVSNVHAE----GVTLDWKV 246
              +  V     +   ++        +  +D+ +PP       NV AE     +++ W+ 
Sbjct: 189 GRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQINPP------LNVTAEIEGTRMSIQWEK 242

Query: 247 PDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
           P          Y V   +   G      + E  +T   +  +    KY  +VRA
Sbjct: 243 PVSAFPIHCFDYEVKIHNTRNGYL----QIEKLMTNAFISIIDDLSKYDVQVRA 292

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           + S  +   G       +   + +       ++  ++S+     V+      L     + 
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD-LFFKKVQV 310

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPP----EDDGGAPIEY 536
            D G+YT         +  + ++ V   +L  +        D  +  ++
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSHPQF 359

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219

 Score = 43.6 bits (102), Expect = 8e-05
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 24/146 (16%)

Query: 199 FYTVTAENINGKDSVEVEVIVLD---KPSPPGGPLKVSNVHAEGVTLDWKVPDDD----G 251
            ++V   + +G+ S E    +L    KP+PP   + V+      ++  W+   +D     
Sbjct: 74  IFSVQITDQSGQYSQECGSFLLAESIKPAPPFD-VTVTFSGQYQIS--WRSDYEDPAFYM 130

Query: 252 GQPIEKYVVDKMDEATGRWTPAGETEGPVTG----LEVEGLIPNHKYKFRVRAVNKQGK- 306
            +   +Y +   +               V      L       +  Y+ +VRA    G  
Sbjct: 131 LKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSS 190

Query: 307 --------SEPLT-TTASIEAKNPFN 323
                   S+P+   T S E K   +
Sbjct: 191 YQGTWSEWSDPVIFQTQSEELKEHHH 216

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 52/424 (12%), Positives = 100/424 (23%), Gaps = 50/424 (11%)

Query: 196 DAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHA-EGVTLDWKVPDDDGGQP 254
           +       +   +G+ + +  + V   P         S     + +TL  +V    GG P
Sbjct: 59  EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVE---GGAP 115

Query: 255 IEKYVVD-KMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
                V     E   +  PA      VT   V     +H   F  R              
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVT-TTVLVRRDHHGANFSCRTELDLRPQGLELFE 174

Query: 314 ASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPP-EQNGGSPIVGYIIEKKEKYSPIWE 372
            +               P++       V+   T     +G  P+    +        +  
Sbjct: 175 NTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP 234

Query: 373 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQ 432
                         + +   ++   R+      G           I      S       
Sbjct: 235 TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI-----YSFPAPNVI 289

Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
           L+  +V  G+              T   +                     +L +  +   
Sbjct: 290 LTKPEVSEGTEVTVKCEAHPRAKVTLNGV------------PAQPLGPRAQLLLKATPED 337

Query: 493 DSGIYT----LAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDT-- 546
           +   ++    L V         T ++ VL        P  D       +   +    T  
Sbjct: 338 NGRSFSCSATLEVAGQLIHKNQTRELRVLY------GPRLDERDCPGNWTWPENSQQTPM 391

Query: 547 ----G--KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI 600
               G     +K ++     + I             + R     Y   A ++QG+    +
Sbjct: 392 CQAWGNPLPELKCLKDGTFPLPIGE--------SVTVTRDLEGTYLCRARSTQGEVTREV 443

Query: 601 EVVV 604
            V V
Sbjct: 444 TVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 41.8 bits (97), Expect = 7e-04
 Identities = 34/320 (10%), Positives = 80/320 (25%), Gaps = 39/320 (12%)

Query: 392 GNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI 451
           G  +  R     +    E  + T+        V P      +S   +   +      ++ 
Sbjct: 154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213

Query: 452 GE---PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 508
           G              D  +   +      +D  +          D G   L      G  
Sbjct: 214 GLFPVSEAQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ 270

Query: 509 KGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME---TDTGKVLIKWIRTNDKRVTIDN 565
                 TV   ++   P  +      E     ++        +  +       + +    
Sbjct: 271 SQETLQTV---TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR- 326

Query: 566 VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF----IEVVVTDKPSAPEGPIQWLLTL 621
                ++ ++     +   ++ +AT       +      E+ V   P      +      
Sbjct: 327 ----AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP-----RLDERDCP 377

Query: 622 TDVTWEISNYLQ---ELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQ 678
            + TW  ++      +   + +P     +      +   D            + R     
Sbjct: 378 GNWTWPENSQQTPMCQAWGNPLP-----EL-----KCLKDGTFPLPIGESVTVTRDLEGT 427

Query: 679 YTVTATNSQGKDQVFIEVVV 698
           Y   A ++QG+    + V V
Sbjct: 428 YLCRARSTQGEVTREVTVNV 447

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 9/107 (8%)

Query: 420 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-----RFK 474
           R +   P I     SD+ V  G     +    G P PT EW      + +          
Sbjct: 4   RQEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62

Query: 475 IVNDDKSTKLKVFDSK--RGDSGIYTLAVKNSWGTDKG-TAKVTVLG 518
           ++       L++   +  R D G+Y    +N  G      A + V  
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 17/106 (16%), Positives = 26/106 (24%), Gaps = 4/106 (3%)

Query: 199 FYTVTAENINGKDSVEVEVIVLD---KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI 255
                     G+ S+  + I L    KP  P     V    A    + +           
Sbjct: 86  IGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVK 145

Query: 256 E-KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
              + V    E                 L    L P   Y+ +VR+
Sbjct: 146 VLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKVRS 191

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 200 YTVTAENINGKDSVEVEVIVLD---KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE 256
           + V  ++         +++ L     P  P   L +  +    + L+W     +      
Sbjct: 73  FVVQLQDPREPRRQATQMLKLQNLVIPWAPEN-LTLHKLSESQLELNWNNRFLN---HCL 128

Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
           +++V    +    WT             +  +    +Y FRVR+
Sbjct: 129 EHLVQYRTDWDHSWTEQSVDYR--HKFSLPSVDGQKRYTFRVRS 170

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
           L +  + +    L WN    +    LE +LV+        W         +  +  +   
Sbjct: 105 LTLHKLSESQLELNWNNRFLN--HCLE-HLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQ 161

Query: 121 HEYKFRVKA 129
             Y FRV++
Sbjct: 162 KRYTFRVRS 170

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 12/102 (11%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKSTK 483
           P I   Q        GS+  F  +         T  W  ++  +   +     +      
Sbjct: 11  PQITV-QPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69

Query: 484 --------LKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTV 516
                   L++ + +    G Y   + N +G+     A +T+
Sbjct: 70  ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 10/86 (11%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           + +  K+  GS        +G PIP  +W  N++ +           +      V     
Sbjct: 9   EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THETKKLYMVPYVDL 59

Query: 492 GDSGIYTLAVKNSWGT-DKGTAKVTV 516
              G Y   V N   + D    ++ +
Sbjct: 60  EHQGTYWCHVYNDRDSQDSKKVEIII 85

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVFDS 489
           +D+ V  G   E         + +  W+  + T+++      R  +++D   T L   + 
Sbjct: 349 ADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSD--GT-LNFTNV 404

Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWN 524
              D+G+YT  V NS G    +A + V G     +
Sbjct: 405 TVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHHH 439

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 8/43 (18%), Positives = 11/43 (25%)

Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
           +  L        D G YT    N  G  +    + V       
Sbjct: 396 DGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           Q+++  V+   +               +WL N  ++   +R  +  ++    L++   KR
Sbjct: 116 QVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSI--LRIDPIKR 172

Query: 492 GDSGIYTLAVKNSWGTDK-GTAKVTVL 517
            D+G Y   + N     +  + K+ ++
Sbjct: 173 EDAGEYQCEISNPVSVRRSNSIKLDII 199

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 22/184 (11%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK-------- 483
           +    +V   +N    ++ +   +    W   + T I K+  + V +             
Sbjct: 5   EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64

Query: 484 --------LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIE 535
                   L        D G+YTL + +             +   +     +       E
Sbjct: 65  EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE 124

Query: 536 YYMVE-KMETDTGKVLIKWIRTNDKRVTIDNVDYFTK----ITIRPLQRSDTAQYTVTAT 590
              V     ++     I+W+  N + + +      ++    + I P++R D  +Y    +
Sbjct: 125 LDSVTLTCLSNDIGANIQWLF-NSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEIS 183

Query: 591 NSQG 594
           N   
Sbjct: 184 NPVS 187

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
           +   + + L +    R+D G YT  A +          V V +KP
Sbjct: 68  EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 10/95 (10%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLC----------NDITIISKDRFKIVNDDKSTK 483
             I++  G     +     E     ++              +    K +         + 
Sbjct: 16  HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75

Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
           L +    R D G+YT A  +   T K +  V V  
Sbjct: 76  LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 608
           TI  + RSD   YT  A++     +    V V +KP
Sbjct: 77  TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
           TI  + RSD   YT  A++     +    V V +KP
Sbjct: 77  TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 23/186 (12%), Positives = 41/186 (22%), Gaps = 58/186 (31%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS------------KDRFKIVNDDKS 481
             I      N  F +     P+    W      +              K+R  +     S
Sbjct: 3   QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV---------------TVLGCSLKWNPP 526
             L +++    D   Y +   N   T K    V                 L C +     
Sbjct: 62  --LTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTD 119

Query: 527 EDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 586
                                 V +K  +  +   ++         T+     +  A + 
Sbjct: 120 ----------------------VELKLYQGKEHLRSLRQK------TMSYQWTNLRAPFK 151

Query: 587 VTATNS 592
             A N 
Sbjct: 152 CKAVNR 157

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 2/46 (4%)

Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
           +  L       +D G YT    N+ G  +    + V    +     
Sbjct: 406 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV--STAGTHHH 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	716
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	100.0
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	100.0
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.98
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.98
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.97
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.97
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.97
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.96
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.96
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.96
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.96
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.96
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.95
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.95
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.94
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.93
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.93
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.93
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.92
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.92
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.91
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.91
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.9
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.9
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.9
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.9
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.89
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.88
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.88
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.88
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.87
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.87
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.87
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.87
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.87
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.86
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.86
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.86
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.86
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.85
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.85
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.85
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.85
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.84
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.84
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.84
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.84
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.83
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.83
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.83
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.83
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.83
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.83
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.83
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.82
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.82
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.81
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.81
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.8
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.8
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.79
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.79
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.79
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.79
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.79
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.79
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.79
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.78
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.78
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.77
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.77
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.77
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.77
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.77
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.77
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.77
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.76
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.76
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.75
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.75
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.74
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.74
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.74
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.74
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.74
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.73
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.73
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.73
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.73
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.72
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.72
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.72
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.71
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.71
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.71
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.71
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.71
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.71
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.69
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.68
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.67
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.67
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.66
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.65
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.65
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.64
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.64
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.64
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.64
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.63
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.63
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.62
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.62
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.61
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.61
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.6
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.6
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.6
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.57
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.57
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.56
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.56
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.54
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.54
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.53
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.52
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	99.51
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.5
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	99.5
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.49
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.49
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.49
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.49
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.47
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.47
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.47
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	99.46
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.44
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.44
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.43
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	99.43
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.43
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.43
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.43
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.42
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.42
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.42
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.42
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.42
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.42
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.41
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.41
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.4
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.4
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.4
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	99.4
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.39
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.39
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.39
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.39
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.39
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.37
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.37
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.37
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.36
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.36
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.36
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.36
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.35
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.35
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.35
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.34
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.34
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.34
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.34
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.34
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	99.33
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	99.33
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.33
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.33
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	99.32
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.32
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	99.32
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.32
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	99.32
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	99.31
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.31
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.31
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.31
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.3
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.3
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.3
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.3
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.3
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.3
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.3
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.3
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.29
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.29
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.29
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.29
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	99.29
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.28
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	99.28
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.28
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.28
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.27
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	99.27
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.27
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	99.27
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.26
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.26
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.26
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.25
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	99.25
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	99.25
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.24
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.24
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.24
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	99.24
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.24
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.24
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.24
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.24
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.23
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.23
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.23
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	99.23
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.23
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	99.23
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.23
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.23
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.23
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	99.23
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	99.23
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	99.23
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.23
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	99.22
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	99.22
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.22
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	99.21
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.21
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.21
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.21
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.21
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.21
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	99.21
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.21
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	99.21
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.2
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.2
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.2
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.2
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.19
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.19
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.19
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	99.19
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.19
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.19
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.19
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	99.19
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.19
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.19
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.19
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	99.19
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.18
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.18
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	99.18
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	99.18
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.17
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.17
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	99.17
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	99.17
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	99.17
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.17
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	99.16
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.16
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.16
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.16
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.16
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.15
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	99.15
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.14
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	99.14
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.14
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	99.14
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	99.14
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.14
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.14
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	99.14
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.14
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	99.14
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	99.13
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	99.13
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.13
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	99.13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.13
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.13
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.13
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	99.13
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	99.12
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	99.12
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	99.12
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	99.12
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.12
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.12
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.12
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.12
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.12
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	99.11
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	99.1
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.1
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	99.1
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.1
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	99.1
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.1
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	99.09
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	99.09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.08
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	99.08
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.08
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	99.08
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	99.08
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.07
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	99.07
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	99.07
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	99.07
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.06
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	99.06
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.06
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	99.06
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	99.05
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.05
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.05
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.05
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	99.05
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	99.05
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.04
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.04
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.04
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	99.04
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	99.04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.04
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	99.03
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.03
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	99.03
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	99.03
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.02
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.02
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.02
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	99.01
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.01
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	99.01
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.01
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	99.01
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.01
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	99.01
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.0
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.0
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.0
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.0
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.99
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.99
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.99
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.99
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	98.99
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.99
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.98
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.98
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.98
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.97
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.97
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.97
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.97
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	98.96
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	98.95
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.95
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	98.95
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	98.95
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.94
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	98.94
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.94
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.94
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	98.94
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.94
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.93
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	98.93
2erj_C	247	Cytokine receptor common gamma chain; immune syste	98.93
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	98.93
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.92
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.92
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.92
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.92
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	98.92
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	98.91
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.91
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.91
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.9
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.89
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.89
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	98.89
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.88
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.88
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.88
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.87
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	98.86
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.86
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	98.86
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.86
2dle_A	104	Receptor-type tyrosine-protein phosphatase ETA; pr	98.86
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.86
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	98.86
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.86
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.85
1he7_A	126	High affinity nerve growth factor receptor; transf	98.85
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.85
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	98.84
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.84
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	98.84
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.84
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.83
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.83
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.82
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.81
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.81
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.81
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.81
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.79
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.79
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.78
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.78
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.78
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	98.77
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.77
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.77
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.77
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.76
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.76
1he7_A	126	High affinity nerve growth factor receptor; transf	98.75
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.75
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.75
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.75
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.74
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	98.74
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.74
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.73
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	98.73
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.73
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.73
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.72
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.72
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.72
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.72
2erj_C	247	Cytokine receptor common gamma chain; immune syste	98.72
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.72
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.72
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.71
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	98.71
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.71
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.7
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.7
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.7
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.69
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.69
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.69
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.69
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.68
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.68
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.68
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.68
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.68
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.67
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.67
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.67
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.67
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.66
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.66
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.66
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.66
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.66
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.66
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.65
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.65
2dle_A	104	Receptor-type tyrosine-protein phosphatase ETA; pr	98.64
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	98.62
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.62
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	98.61
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.61
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.61
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.6

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=312.87  Aligned_cols=445  Identities=16%  Similarity=0.167  Sum_probs=282.9

Q ss_pred             CCCC-CCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC--------CcEEEecccCCCeEEecCCCCCcEEEE
Q psy7040          55 LDPE-GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET--------GVWIPVGKTREPEMDVTGLTPGHEYKF  125 (716)
Q Consensus        55 ~~p~-~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~--------~~~~~~~~~~~~~~~i~~L~~~~~y~~  125 (716)
                      +.|| .+|.+.+++.+++.|+|++|..+++.++. |.|+|+...+        ..|..+.....+.++|.+|.|++.|.|
T Consensus       160 P~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~~~~~~~w~~v~~~~~~~~~i~~L~P~t~Y~f  238 (680)
T 1zlg_A          160 PLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQF  238 (680)
T ss_pred             cccccccceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcCccccCceEEEEecCCCeEEeCCCCCCCEEEE
Confidence            3344 78999999999999999998655566777 9999987633        578877666668899999999999999


Q ss_pred             EEEEEecCccCCCccccc-eEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEE
Q psy7040         126 RVKALNKEGESEPLETFS-SIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTA  204 (716)
Q Consensus       126 ~v~a~~~~g~~~~s~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a  204 (716)
                      +|+|.|..|.+.++.... ..+...                                                       
T Consensus       239 rV~A~n~~G~~~~ss~s~~~~t~~~-------------------------------------------------------  263 (680)
T 1zlg_A          239 RVAAVNVHGTRGFTAPSKHFRSSKD-------------------------------------------------------  263 (680)
T ss_pred             EEEEEeCCCCCCCCCCccceEcCCC-------------------------------------------------------
Confidence            999999998433332222 111110                                                       


Q ss_pred             EeCCCCceeEEEEEEecCCCCCCCCeEEeEE--eCC---eEEEEEECCCCCCCCccceEEEEEEeC-------CCCCeEE
Q psy7040         205 ENINGKDSVEVEVIVLDKPSPPGGPLKVSNV--HAE---GVTLDWKVPDDDGGQPIEKYVVDKMDE-------ATGRWTP  272 (716)
Q Consensus       205 ~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~--~~~---~~~l~W~~p~~~~~~~~~~y~v~~~~~-------~~~~~~~  272 (716)
                                     ..+|.+|.+ +.+...  ..+   ++.|+|++|...+ .++.+|.|++...       ....|..
T Consensus       264 ---------------~~pp~~P~~-l~~~~~~~~~~g~~sv~l~W~pP~~~~-g~i~~Y~V~~~~~~~~~~~~~~~~~~~  326 (680)
T 1zlg_A          264 ---------------PSAPPAPAN-LRLANSTVNSDGSVTVTIVWDLPEEPD-IPVHHYKVFWSWMVSSKSLVPTKKKRR  326 (680)
T ss_pred             ---------------CCCCCCCCc-eEeeeeeecCCCceEEEEEecCCCCCC-CceeEEEEEEEecccccccCCccceEE
Confidence                           036777877 788777  677   9999999877544 4799999999822       1224544


Q ss_pred             ccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEE---------
Q psy7040         273 AGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVEL---------  343 (716)
Q Consensus       273 ~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l---------  343 (716)
                      ... ......+.|.+|.|++.|.|+|.|.|..|.+..+.....+.+.+...+|. |.++.+...+.+++.|         
T Consensus       327 ~~v-~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~~~P~-p~~l~~~~~s~tsi~lp~~~~~~~~  404 (680)
T 1zlg_A          327 KTT-DGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN-KEQLVKTRKGGIQTQLPFQRRRPTR  404 (680)
T ss_pred             EEE-cCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEEEECCCCCCC-ccccccccccCccccccccccCCCc
Confidence            322 24568999999999999999999999999987777644455555556676 7888888888888877         


Q ss_pred             --EecCCCCCCCccceEEEEEEeecCCCc-------e------------EEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         344 --AWTPPEQNGGSPIVGYIIEKKEKYSPI-------W------------EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       344 --~W~~p~~~~~~~i~~y~v~~~~~~~~~-------~------------~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                        +|.+|...+  .+.+|+|.|...+...       |            ...........++.|.+|.+++.|.|+|+|.
T Consensus       405 ~l~W~~P~~~~--~~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~  482 (680)
T 1zlg_A          405 PLEVGAPFYQD--GQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPI  482 (680)
T ss_pred             cccccCCcccC--CcceEEEEEeCCCCCccceEEEEEeeeecccCCCCcceeeeeeccCceEEecCCCCCCeEEEEEEEe
Confidence              999986433  3568999887655321       1            1111223456789999999999999999999


Q ss_pred             eCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeE
Q psy7040         403 NKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST  482 (716)
Q Consensus       403 n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~  482 (716)
                      |..|.+..... .+.+ ......|..             ....+.|.....|...       .........       ..
T Consensus       483 n~~G~s~~~~~-~f~T-~~~~~~~~~-------------~~~~v~~~~~~~P~~~-------~v~~~P~~l-------~~  533 (680)
T 1zlg_A          483 RPKSHSKAEAV-FFTT-PPCSALKGK-------------SHKPIGCLGEAGHVLS-------KVLAKPENL-------SA  533 (680)
T ss_pred             cCCCCCCcccc-ceeC-CCccccccC-------------CccccccCCCCccccc-------cccCCcccc-------ce
Confidence            99997642111 0111 000000000             0000111000000000       000000000       00


Q ss_pred             EEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCcee--eeEEEcccee
Q psy7040         483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL--IKWIRTNDKR  560 (716)
Q Consensus       483 ~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~--~~w~~~~~~~  560 (716)
                      .+.+..+.                         . ++.|+|++|....++.|.+|.|+|.....+...  ........  
T Consensus       534 ~v~v~~~~-------------------------~-ti~lsW~pP~~~~ng~I~gY~V~y~~~~~~~~~~~~~~~~~~~--  585 (680)
T 1zlg_A          534 SFIVQDVN-------------------------I-TGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQ--  585 (680)
T ss_pred             eEEEeccC-------------------------c-eEEEEecCCCCCCCCCceeEEEEEEEccCCCccccccceeeec--
Confidence            01111000                         0 689999998754455799999999876431100  00000000  


Q ss_pred             eeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeec---cCCCCCCccceeeccceeEEEEE---------E
Q psy7040         561 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV---TDKPSAPEGPIQWLLTLTDVTWE---------I  628 (716)
Q Consensus       561 ~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v---~~~p~~~~~~~~~~~~~v~l~w~---------i  628 (716)
                       ..........+.|.+|++++.|.|+|+|.|..|.|+. ....+   ..+|..|. ...+.... .|+|.         |
T Consensus       586 -~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~G~~-~~~~~~T~~~~P~~P~-~l~v~~~~-~l~W~pP~~~~G~~I  661 (680)
T 1zlg_A          586 -SQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPA-TIKTFRTPELPPSSAH-RSHLKHRH-PHHYKPSPERYGKPI  661 (680)
T ss_pred             -ccccCCcccEEEecCCCCCceEEEEEEEEcCCCcCCC-cceEEECCCCCCCCCC-CCeEEecc-ceeECCCCCCCCCcc
Confidence             0001112488999999999999999999999999988 44443   23344444 22333333 89998         7


Q ss_pred             eeEEEEeee
Q psy7040         629 SNYLQELHS  637 (716)
Q Consensus       629 ~~y~v~~~~  637 (716)
                      .+|.++|+-
T Consensus       662 ~~~~~~~~~  670 (680)
T 1zlg_A          662 PNPLLGLDS  670 (680)
T ss_pred             ceeeEEEee
Confidence            888887653

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=7.5e-34  Score=313.75  Aligned_cols=501  Identities=15%  Similarity=0.140  Sum_probs=272.1

Q ss_pred             eEEecCCCCC-cEEEEEEEEEecCccCCCccccceEE--ecCCC-----Cc--ccccccccceecccCCCCC--------
Q psy7040         111 EMDVTGLTPG-HEYKFRVKALNKEGESEPLETFSSII--ARDPY-----SK--YTSVSSLDSHKRSNQPCGS--------  172 (716)
Q Consensus       111 ~~~i~~L~~~-~~y~~~v~a~~~~g~~~~s~~~~~~~--~~~p~-----~~--~~~~~~~~~~~~~~~p~G~--------  172 (716)
                      .+.|..+..+ ..+.|+|.+.+..|............  ..+|.     ..  .......+.|.+.+.|.-.        
T Consensus       124 ~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~  203 (731)
T 2v5y_A          124 ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGI  203 (731)
T ss_dssp             EEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEECCCCCEEEETTSCEEEEEEEESCCCTTCEEEEEES
T ss_pred             EEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccccccceEEeCCCcEEEEEEeCCCCCCceeEEEecC
Confidence            4666666333 35889998888777433221111000  01111     11  1122234668888777621        


Q ss_pred             -CceEE------EEecCCccEEEEeccccCcceEEEEEEEeCCCC-ceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEE
Q psy7040         173 -GMVRK------VQHLDYNTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDW  244 (716)
Q Consensus       173 -~~~~~------~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W  244 (716)
                       +..+.      +........|.|.++.+.|.|.|+|.|.|..|. .+..+.+.+..+|.+|.. ..+.....+++.|.|
T Consensus       204 ~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~-p~~~~~~~~~v~l~w  282 (731)
T 2v5y_A          204 DVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAP-PQLASVGATYLWIQL  282 (731)
T ss_dssp             SSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSC-CEEEEECSSCEEEEC
T ss_pred             CCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCC-cceeccCCceEEEEe
Confidence             11111      111123479999999999999999999999998 777889999999998887 466777889999999


Q ss_pred             ECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEE--cCCCCCCCCcccceEEecCCC
Q psy7040         245 KVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV--NKQGKSEPLTTTASIEAKNPF  322 (716)
Q Consensus       245 ~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~--n~~g~~~~~~~~~~~~~~~~~  322 (716)
                      .++..+++.++..|.|+++.. ...|.....  .....+.|.+|.+++.|.|+|.|.  |..|.+.++......  ....
T Consensus       283 ~~~~~~g~~~i~~Y~v~~~~~-~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~--t~~~  357 (731)
T 2v5y_A          283 NANSINGDGPIVAREVEYCTA-SGSWNDRQP--VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTR--TKCA  357 (731)
T ss_dssp             CCSSBSSCSCCCEEEEEEEES-SSSCEEEEE--CCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEE--CCCC
T ss_pred             CCcccCCCCccEEEEEEEEEC-CCCceEEec--cCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEee--ecCC
Confidence            987665667899999999875 456765544  345899999999999999999999  999998777654222  2223


Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCC-CccceEEEEEEeecCCCceEE----EeeecCCCCeEEecCCCCCCeEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNG-GSPIVGYIIEKKEKYSPIWEK----CAQTEGDTPKGKVLDLIEGNQYEF  397 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~-~~~i~~y~v~~~~~~~~~~~~----~~~~~~~~~~~~i~~l~~~~~Y~~  397 (716)
                      .+|.+|.++.+...+.+++.|+|.+|.... .+.+.+|.|+|+......+..    ..........+.|.+|.|++.|.|
T Consensus       358 ~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  437 (731)
T 2v5y_A          358 DPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSV  437 (731)
T ss_dssp             CCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEE
T ss_pred             CCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEE
Confidence            445789999999999999999999975432 346789999998765333322    123456778999999999999999


Q ss_pred             EEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEe
Q psy7040         398 RVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN  477 (716)
Q Consensus       398 ~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~  477 (716)
                      +|+|.|..|.+. +......+....+.+|..                           ..               ..   
T Consensus       438 ~V~A~n~~G~s~-S~~~~~~T~~~~P~~p~~---------------------------~~---------------~~---  471 (731)
T 2v5y_A          438 KLILMNPEGRKE-SQELIVQTDEDLPGAVPT---------------------------ES---------------IQ---  471 (731)
T ss_dssp             EEEEECSSCEEE-CCCEEEECCCCCCCCCCT---------------------------TT---------------CE---
T ss_pred             EEEEEcCCCCCC-CceEEEEccCCCCCCCCc---------------------------ce---------------EE---
Confidence            999999999874 433222222222211110                           00               00   


Q ss_pred             CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEcc
Q psy7040         478 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTN  557 (716)
Q Consensus       478 ~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~  557 (716)
                                           +.. +..            ++.|+|++|...+| .+.+|.|++.......   .|....
T Consensus       472 ---------------------~~~-~~~------------si~l~W~~P~~~~g-~i~~Y~V~~~~~~~~~---~~~~~~  513 (731)
T 2v5y_A          472 ---------------------GST-FEE------------KIFLQWREPTQTYG-VITLYEITYKAVSSFD---PEIDLS  513 (731)
T ss_dssp             ---------------------EEE-ETT------------EEEEECCCCSCCSS-CCCEEEEEEEEEEECC------CCC
T ss_pred             ---------------------eee-cCC------------eEEEEEcCCCCCCC-CccceEEEEEECcCCC---cccccc
Confidence                                 000 000            89999999876655 5999999998765310   111000


Q ss_pred             ceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee--ccCCCCCCcc----ceeeccceeEEEEE----
Q psy7040         558 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV--VTDKPSAPEG----PIQWLLTLTDVTWE----  627 (716)
Q Consensus       558 ~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~--v~~~p~~~~~----~~~~~~~~v~l~w~----  627 (716)
                      ..............+.|.+|++++.|.|+|+|.|..|.|+.+....  ...+|..|..    ....+.+++.|.|.    
T Consensus       514 ~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~T~~~~P~~p~~~~~~~~~~~~~si~l~W~pp~~  593 (731)
T 2v5y_A          514 NQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHS  593 (731)
T ss_dssp             CCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEEEEEECCCCCCCC-------------------------
T ss_pred             CcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcccEEEcCCCCCCCCCcccccccccCCceEEEEEeCCCC
Confidence            0000001111237899999999999999999999999998885322  1334444321    23456789999998    


Q ss_pred             ----EeeEEEEeeeeccCcee-----------eEEEEeCCe---------E-----------eeecccceeeEEEEccCC
Q psy7040         628 ----ISNYLQELHSSLMPISL-----------ESQYLMNDK---------R-----------VTIDNVDYFTKITIRPLQ  672 (716)
Q Consensus       628 ----i~~y~v~~~~~~~~~~~-----------~~~W~~~~~---------~-----------~~~~~~~~~~~~~i~~l~  672 (716)
                          |.+|.|.++...+.-..           .+.|.....         +           +..........+....|.
T Consensus       594 ~~g~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aa~~~p~~~~~~~~~~vg~~~~~~~~~n~~L~  673 (731)
T 2v5y_A          594 RGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLL  673 (731)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCceEEEEEEEEecCCCCCccccccccCcccccCHHHHhhcCCcceEEEEcChhhCcccCCEEECCCCeECCEECCCCC
Confidence                88999988775443110           112221110         0           000000011234556699


Q ss_pred             CCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         673 RSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       673 ~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      ++..|.++++|.+.+|.+..+..+.|.+.
T Consensus       674 p~~~Y~i~v~A~s~~g~~~~~~~v~~~t~  702 (731)
T 2v5y_A          674 PYKSYRIYFQAASRANGETKIDCVQVATK  702 (731)
T ss_dssp             -----------------------------
T ss_pred             CCCceEEEEEEEEecCCCcEeeeEEEecc
Confidence            99999999999999999988887888877

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=100.00  E-value=5.5e-35  Score=316.01  Aligned_cols=455  Identities=15%  Similarity=0.148  Sum_probs=308.6

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEeccc--CCCeEEec-CCCCCcEEEEEEEEEecC
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEMDVT-GLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~--~~~~~~i~-~L~~~~~y~~~v~a~~~~  133 (716)
                      +|.+|........++.++|+++...  .++..|.|+++..+ ..+..+...  ...++.+. +|.+++.|.|+|.|.|..
T Consensus       105 ~P~nl~c~~~~~~~~~~~W~~~~~~--~~~~~y~l~~~~~~-~~~~~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~  181 (589)
T 3l5h_A          105 KPKNLSCIVNEGKKMRCEWDGGRET--HLETNFTLKSEWAT-HKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENAL  181 (589)
T ss_dssp             CCEEEEEEEETTSCEEEEEECCSCC--SSCEEEEECCBCSS-SBCCCEECBTTBSSCCBCCSCCCSSSCEEECEEEEESS
T ss_pred             CCEeeEEEECCCceEEEEECCCCcC--CcCceEEEEEEEcC-CCcccCCCCCCCcEEEEECCCCchheeEEEEEEEEeCC
Confidence            3344666677888999999987632  45889999886544 233333322  23567777 799999999999999999


Q ss_pred             ccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCcee
Q psy7040         134 GESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSV  213 (716)
Q Consensus       134 g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  213 (716)
                      |.+.+....  +...                                                                 
T Consensus       182 G~~~s~~~~--~~~~-----------------------------------------------------------------  194 (589)
T 3l5h_A          182 GKVTSDHIN--FDPV-----------------------------------------------------------------  194 (589)
T ss_dssp             CCBCCCCEE--ECGG-----------------------------------------------------------------
T ss_pred             CCcccccEE--Eccc-----------------------------------------------------------------
Confidence            875432111  0000                                                                 


Q ss_pred             EEEEEEecCCCCCCCCeEE--eEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc--CcccceEEEcCCC
Q psy7040         214 EVEVIVLDKPSPPGGPLKV--SNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET--EGPVTGLEVEGLI  289 (716)
Q Consensus       214 ~~~~~v~~~p~~p~~~~~~--~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~  289 (716)
                           ...+|.+|.+ +.+  .....+++.|+|.+|...++ ++..|.|+++..+...|......  ......+.+.+|.
T Consensus       195 -----~~~~p~pP~~-~~~~~~~~~~~~v~l~W~~p~~~~~-~~~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~  267 (589)
T 3l5h_A          195 -----YKVKPNPPHN-LSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLK  267 (589)
T ss_dssp             -----GSEECCCCCS-CEEECTTTCTTCEEEECCCCGGGGT-SCEEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCC
T ss_pred             -----cEEEcCCCce-EEEEecCCCCCeEEEEeCCCCCCCe-eeEEEEEEECCCCCCCcEEEccccCcCceeEEEECCCC
Confidence                 0125778887 677  34678899999998776444 68899999998887788765332  3456899999999


Q ss_pred             CCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCC-CCCCcEEE----eeeCCeEEEEecCC-CCCCCccceEEEEEE
Q psy7040         290 PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG-KPGTPEIK----DFDTDFVELAWTPP-EQNGGSPIVGYIIEK  363 (716)
Q Consensus       290 p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~-~p~~~~~~----~~~~~~i~l~W~~p-~~~~~~~i~~y~v~~  363 (716)
                      |++.|.|+|+|.|..|.+.++..+..+...+....|. +|..+...    ..+.+++.|.|.++ ..+.++.+.+|+|++
T Consensus       268 p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~  347 (589)
T 3l5h_A          268 PFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTL  347 (589)
T ss_dssp             SSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEE
T ss_pred             CCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcEEEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEE
Confidence            9999999999999999887776665565666666674 55544433    34668999999973 444556899999999


Q ss_pred             eecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCe
Q psy7040         364 KEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN  443 (716)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~  443 (716)
                      +..+. .+..   .......+++  |.+++.|.|+|+|.|..|.+.++...........+.+|.                
T Consensus       348 ~~~~~-~~~~---~~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~~~~~~~~~~~~p~~----------------  405 (589)
T 3l5h_A          348 TRWKS-HLQN---YTVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVM----------------  405 (589)
T ss_dssp             CCTTS-CCCB---CCCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCCCCCCTTCCCCSCCC----------------
T ss_pred             ecCCC-Ccee---eccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEEEeecccccCCCCcc----------------
Confidence            76553 2322   2233444554  889999999999999999998775432110000000110                


Q ss_pred             EEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEE
Q psy7040         444 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKW  523 (716)
Q Consensus       444 ~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W  523 (716)
                                   .+.                        ....+   .                         ++.|+|
T Consensus       406 -------------~l~------------------------~~~~~---~-------------------------si~l~W  420 (589)
T 3l5h_A          406 -------------DLK------------------------AFPKD---N-------------------------MLWVEW  420 (589)
T ss_dssp             -------------SCE------------------------EEECS---S-------------------------SEEEEC
T ss_pred             -------------eEE------------------------EEECC---C-------------------------eEEEEE
Confidence                         000                        00000   0                         789999


Q ss_pred             eCCCCCCCCceeeEEEEEEecCCCce-eeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceee
Q psy7040         524 NPPEDDGGAPIEYYMVEKMETDTGKV-LIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV  602 (716)
Q Consensus       524 ~~p~~~~~~~i~~y~v~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~  602 (716)
                      ++|..    .+.+|.|++........ ...|.......        ...+.+.+|.+++.|.|+|+|.|..|.|..+...
T Consensus       421 ~~p~~----~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~L~p~t~Y~~~V~A~~~~g~g~~~~~~  488 (589)
T 3l5h_A          421 TTPRE----SVKKYILEWCVLSDKAPCITDWQQEDGTV--------HRTYLRGNLAESKCYLITVTPVYADGPGSPESIK  488 (589)
T ss_dssp             CCCSS----CCSCBCCEEEEECSSSCCCEEECCBCSSC--------CEEECCSCCCSSSEEEEEECBEETTEECCCEEEE
T ss_pred             ECCCC----CccEEEEEEEECCCCCCCccCcEEeeCCc--------ceEEehhccccCcEEEEEEEEEeCCcccCCEEEE
Confidence            99864    48899999987764211 13454433221        2667779999999999999999999988875433


Q ss_pred             e-----ccCCCCCCccceeeccceeEEEEE----------EeeEEEEeeeeccCceeeEEEEeCCeEeeecccceeeEEE
Q psy7040         603 V-----VTDKPSAPEGPIQWLLTLTDVTWE----------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKIT  667 (716)
Q Consensus       603 ~-----v~~~p~~~~~~~~~~~~~v~l~w~----------i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  667 (716)
                      .     +|.+|..+. +..++.+++.|+|.          +.+|.|.|+...     .-.|       ..........+.
T Consensus       489 ~~t~~~~P~~pp~l~-~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~-----~~~~-------~~~~~~~~~~~~  555 (589)
T 3l5h_A          489 AYLKQAPPSKGPTVR-TKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII-----GNET-------AVNVDSSHTEYT  555 (589)
T ss_dssp             EESSCCCCSSCCCCC-EECCCSSCBEEBCCCCCHHHHCSCEEEEEECCBCSS-----CCCC-------CEEECTTCCBCC
T ss_pred             EEeccCCCCCCCeEE-EeecccceEEEEecCCCHHHcCccceeEEEEEEeCC-----CCeE-------EEEeCCcccEEE
Confidence            2     132222333 55677899999998          679999776521     0011       011122346889


Q ss_pred             EccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         668 IRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       668 i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      |.+|.+++.|.|++.|.|..| +..+..+.+.++
T Consensus       556 ~~~L~p~t~Y~~~V~A~n~~G-~~~S~~~~~~T~  588 (589)
T 3l5h_A          556 LSSLTSDTLYMVRMAAYTDEG-GKDGPEFTFTTP  588 (589)
T ss_dssp             BCSCCSSCCEECCEEEEETTE-EEECCCCEECCC
T ss_pred             ecCCCCCCEEEEEEEEEeCCC-CCCCCCeEEecC
Confidence            999999999999999999999 777777777653

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=4.9e-32  Score=290.43  Aligned_cols=485  Identities=15%  Similarity=0.181  Sum_probs=315.6

Q ss_pred             CceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCC---CCeEEeEEeCCeEEEEEECCCC
Q psy7040         173 GMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPG---GPLKVSNVHAEGVTLDWKVPDD  249 (716)
Q Consensus       173 ~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~---~~~~~~~~~~~~~~l~W~~p~~  249 (716)
                      ..++.+........|.|.++...|+|.|+|.|.|..|.......+.+...+.+|.   .+..+....+..+.|.|.....
T Consensus        49 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~  128 (570)
T 3b43_A           49 APAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGS  128 (570)
T ss_dssp             CSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESS
T ss_pred             CCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccC
Confidence            3456666666678999999999999999999999999988888888765443332   1123344567889999996332


Q ss_pred             CCCCccceEEEEEEe--C-CCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCC-
Q psy7040         250 DGGQPIEKYVVDKMD--E-ATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQP-  325 (716)
Q Consensus       250 ~~~~~~~~y~v~~~~--~-~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p-  325 (716)
                          +...+.+....  . ....... . .......+.|.++...+.+.|+|.|.|..|....+..   +.+.....+| 
T Consensus       129 ----p~~~v~W~k~g~~l~~~~~~~~-~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~---l~v~~~~~pp~  199 (570)
T 3b43_A          129 ----EPLQVSWYKDGELLKDDANLQT-S-FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAK---LTLSEHEVPPF  199 (570)
T ss_dssp             ----SSCEEEEEETTEECCCCSSEEE-E-EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE---EEEECCCCCCE
T ss_pred             ----CCCEEEEEECCEECcCCCCEEE-E-EECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEE---EEEcCCCCCCc
Confidence                22222222210  0 1111111 0 0123467999999999999999999998875422211   2222111111 


Q ss_pred             --CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC-----CCceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         326 --GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-----SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       326 --~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                        ..|.++.  ...+..+.|.|.....    +..  .+.|...+     +....  .........+.|.++...+.+.|+
T Consensus       200 ~~~~p~~~~--v~~G~~~~l~C~~~g~----p~p--~i~W~k~g~~i~~~~~~~--~~~~~~~~~L~i~~v~~~D~G~Y~  269 (570)
T 3b43_A          200 FDLKPVSVD--LALGESGTFKCHVTGT----API--KITWAKDNREIRPGGNYK--MTLVENTATLTVLKVTKGDAGQYT  269 (570)
T ss_dssp             EEECCCCBC--CBSBSCEEEEEEEESS----SCC--EEEEEETTEECCTTSSEE--EEEETTEEEEEESSBCGGGCEEEE
T ss_pred             cccCCceeE--ecCCCeEEEEEEEEEC----CCC--EEEEEECCEECcCCCcEE--EEEECCEEEEEEcccCcccCEEEE
Confidence              1122221  1234556666654211    111  22232221     01111  111223457889999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC
Q psy7040         399 VLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND  478 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~  478 (716)
                      |.|.|..|....+      .......+|.+.........+..|..+.|.|.+.+.|.+.+.|++++..+....++.+...
T Consensus       270 C~a~N~~g~~~~~------~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~  343 (570)
T 3b43_A          270 CYASNVAGKDSCS------AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV  343 (570)
T ss_dssp             EEEEETTEEEEEE------EEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEE
T ss_pred             EEEECCCCcEEEE------EEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEE
Confidence            9999988754211      1112233565544333445678999999999999999999999999999988888888777


Q ss_pred             CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCC----CCCCCceeeEEEEEEecCCCceeeeEE
Q psy7040         479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPE----DDGGAPIEYYMVEKMETDTGKVLIKWI  554 (716)
Q Consensus       479 ~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~----~~~~~~i~~y~v~~~~~~~~~~~~~w~  554 (716)
                      .....|.|.++...|.|.|+|.|.|..|....+..+.+.....--..|.    ..+......|.+.    +.+.+.+.|+
T Consensus       344 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~----g~P~p~v~W~  419 (570)
T 3b43_A          344 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ----GTPPFQVSWH  419 (570)
T ss_dssp             TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEE----SSSSCCCEEE
T ss_pred             CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEe----cCCCCEEEEE
Confidence            7788999999999999999999999999988888777761110001111    1122223344443    3344559999


Q ss_pred             Eccceeeeec-----cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCcc---ceeeccceeEEEE
Q psy7040         555 RTNDKRVTID-----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG---PIQWLLTLTDVTW  626 (716)
Q Consensus       555 ~~~~~~~~~~-----~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~---~~~~~~~~v~l~w  626 (716)
                      +.+.......     .......+.|.++...+.+.|+|.|.|..|.......+.|..+|.....   +....+..+.   
T Consensus       420 k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~---  496 (570)
T 3b43_A          420 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQ---  496 (570)
T ss_dssp             ETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEE---
T ss_pred             ECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEE---
Confidence            9876543211     1122357889999999999999999999998777666667776642211   1222233444   


Q ss_pred             EEeeEEEEeeeeccCcee----eEEEEeCCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEE
Q psy7040         627 EISNYLQELHSSLMPISL----ESQYLMNDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE  695 (716)
Q Consensus       627 ~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~  695 (716)
                                 |.|.+.|    .+.|++++..+...       .......|.|.++...|+|.|+|.|.|.+|..++++.
T Consensus       497 -----------l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~  565 (570)
T 3b43_A          497 -----------LQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFAT  565 (570)
T ss_dssp             -----------EEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             -----------EEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEE
Confidence                       5566665    89999998655432       1234478999999999999999999999999999999


Q ss_pred             EEEec
Q psy7040         696 VVVTD  700 (716)
Q Consensus       696 l~v~~  700 (716)
                      |.|.+
T Consensus       566 L~V~e  570 (570)
T 3b43_A          566 LSVLE  570 (570)
T ss_dssp             ECCBC
T ss_pred             EEEeC
Confidence            98753

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=100.00  E-value=4.6e-31  Score=286.63  Aligned_cols=446  Identities=14%  Similarity=0.166  Sum_probs=272.0

Q ss_pred             CcceEEEEEEEeCCCCceeEEEEEEecCCCCC-CCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCC------
Q psy7040         195 ADAGFYTVTAENINGKDSVEVEVIVLDKPSPP-GGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT------  267 (716)
Q Consensus       195 ~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p-~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~------  267 (716)
                      .+.|.+.| +.|..|..-......+.+.|.+| .+ +.+.....+++.|+|++|.+.++.++. |.|+++....      
T Consensus       133 ~c~g~~~C-c~n~cG~~C~~P~~~~~~~P~~P~~~-l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~~~  209 (680)
T 1zlg_A          133 ECSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKE-LRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSED  209 (680)
T ss_pred             cCCCcccc-ccccccccccccceeeeccccccccc-ceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcCcc
Confidence            45566666 56677764332233357788888 66 899999999999999987655566677 9999987532      


Q ss_pred             --CCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEee--eCC---e
Q psy7040         268 --GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF--DTD---F  340 (716)
Q Consensus       268 --~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~--~~~---~  340 (716)
                        ..|..+..  .....+.|.+|.|++.|.|+|.|.|..|.+..+.....+.......+|.+|.++.+...  +.+   +
T Consensus       210 ~~~~w~~v~~--~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~s  287 (680)
T 1zlg_A          210 DATHWQTVAQ--TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVT  287 (680)
T ss_pred             ccCceEEEEe--cCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCceE
Confidence              56776654  34678999999999999999999999995444444433333222357889999999887  777   9


Q ss_pred             EEEEecCCCCCCCccceEEEEEEeec-C------CCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCC
Q psy7040         341 VELAWTPPEQNGGSPIVGYIIEKKEK-Y------SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP  413 (716)
Q Consensus       341 i~l~W~~p~~~~~~~i~~y~v~~~~~-~------~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~  413 (716)
                      +.|+|.+|...+ ++|.+|+|+|+.. +      ...|... .......+++|.+|.+++.|.|+|+|.|..|.|.++..
T Consensus       288 v~l~W~pP~~~~-g~i~~Y~V~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~  365 (680)
T 1zlg_A          288 VTIVWDLPEEPD-IPVHHYKVFWSWMVSSKSLVPTKKKRRK-TTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSA  365 (680)
T ss_pred             EEEEecCCCCCC-CceeEEEEEEEecccccccCCccceEEE-EEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCC
Confidence            999999876544 5899999999822 1      1234433 23456688999999999999999999999999988776


Q ss_pred             CCceEeecCCCCCcccccccccEEEecCCeEEEEEE-EeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCC
Q psy7040         414 TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDIN-VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG  492 (716)
Q Consensus       414 ~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~-v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~  492 (716)
                      ...+...+...+|. .    .++.+.......+.+. ....+...+.|.....                           
T Consensus       366 ~~~v~~~T~~~~P~-p----~~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~---------------------------  413 (680)
T 1zlg_A          366 KVSLHFTSTHATNN-K----EQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFY---------------------------  413 (680)
T ss_pred             ceeEEEECCCCCCC-c----cccccccccCccccccccccCCCccccccCCcc---------------------------
Confidence            44344333333332 1    1111111110000000 0000111112211000                           


Q ss_pred             CceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEE
Q psy7040         493 DSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKI  572 (716)
Q Consensus       493 ~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  572 (716)
                                + .+         .....|.|.....   ..+..|.|.|.+.........|....      ........+
T Consensus       414 ----------~-~~---------~~~y~v~w~~~~~---~~v~~Y~V~w~~~~~~~~~~~~~~~~------~~~~~~~~~  464 (680)
T 1zlg_A          414 ----------Q-DG---------QLQVKVYWKKTED---PTVNRYHVRWFPEACAHNRTTGSEAS------SGMTHENYI  464 (680)
T ss_pred             ----------c-CC---------cceEEEEEeCCCC---CccceEEEEEeeeecccCCCCcceee------eeeccCceE
Confidence                      0 00         0034445544321   12455555554321100000111100      001123789


Q ss_pred             EEcCCCCCCeEEEEEEEEcCCCCCcccee-----------------ee-----------ccCCCCCCcc---ceeeccce
Q psy7040         573 TIRPLQRSDTAQYTVTATNSQGKDQVFIE-----------------VV-----------VTDKPSAPEG---PIQWLLTL  621 (716)
Q Consensus       573 ~i~~L~~~~~y~~~v~a~n~~G~~~~s~~-----------------~~-----------v~~~p~~~~~---~~~~~~~~  621 (716)
                      .|.+|.+++.|.|+|+|.|..|.+.....                 +.           ++.+|..+..   +..++.+ 
T Consensus       465 ~l~~L~p~t~Y~~~V~A~n~~G~s~~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~~v~v~~~~~t-  543 (680)
T 1zlg_A          465 ILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNIT-  543 (680)
T ss_pred             EecCCCCCCeEEEEEEEecCCCCCCccccceeCCCccccccCCccccccCCCCccccccccCCccccceeEEEeccCce-
Confidence            99999999999999999999995542211                 00           1133433210   2233444 


Q ss_pred             eEEEEE---------EeeEEEEeeeeccCceeeEEEEe-CCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         622 TDVTWE---------ISNYLQELHSSLMPISLESQYLM-NDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       622 v~l~w~---------i~~y~v~~~~~~~~~~~~~~W~~-~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                      +.|+|+         |.+|.|.|+...-.   . .+.. ....+...  .......+.|.+|.+++.|.|+|.|.|..|.
T Consensus       544 i~lsW~pP~~~~ng~I~gY~V~y~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~  619 (680)
T 1zlg_A          544 GHFSWKMAKANLYQPMTGFQVTWAEVTTE---S-RQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGE  619 (680)
T ss_pred             EEEEecCCCCCCCCCceeEEEEEEEccCC---C-ccccccceeeecccccCCcccEEEecCCCCCceEEEEEEEEcCCCc
Confidence            999998         68999987653110   0 0000 00001000  1123478999999999999999999999999


Q ss_pred             ceeeEEEEEecCCCCCCCCeEEEEe
Q psy7040         690 DQVFIEVVVTDKPSAPEGPIQIWMS  714 (716)
Q Consensus       690 ~~~s~~l~v~~~p~~p~~p~~~~~~  714 (716)
                      +.. ..+.+.+++.+|..|..+.++
T Consensus       620 G~~-~~~~~~T~~~~P~~P~~l~v~  643 (680)
T 1zlg_A          620 GPA-TIKTFRTPELPPSSAHRSHLK  643 (680)
T ss_pred             CCC-cceEEECCCCCCCCCCCCeEE
Confidence            987 668888888888777766654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=8.2e-30  Score=278.53  Aligned_cols=529  Identities=15%  Similarity=0.080  Sum_probs=325.9

Q ss_pred             CeEEecCCCCCcEEEEEEEEEecCccCCCccccceEEecC-CCCcc--------cccccccceecccCCC--------C-
Q psy7040         110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARD-PYSKY--------TSVSSLDSHKRSNQPC--------G-  171 (716)
Q Consensus       110 ~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~-p~~~~--------~~~~~~~~~~~~~~p~--------G-  171 (716)
                      .++.|.+++..+.+.|+|++.+.............+.... ++.+.        ......+.|.+.+ |.        | 
T Consensus        71 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~  149 (642)
T 1e07_A           71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQ  149 (642)
T ss_pred             CcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEECCC-CCeeEEEEECCe
Confidence            5899999999999999999988643221111112222111 11110        1112235688776 33        2 


Q ss_pred             ---CCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCc-eeEEEEEEecCCCCCCC-CeEEeEEeCCeEEEEEEC
Q psy7040         172 ---SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGG-PLKVSNVHAEGVTLDWKV  246 (716)
Q Consensus       172 ---~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p~~p~~-~~~~~~~~~~~~~l~W~~  246 (716)
                         ...++.+.  .....|.|.+++..|.|.|+|.|.|..|.. +..+.|.|...|..+.. +.......++.+.|.|..
T Consensus       150 ~l~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~  227 (642)
T 1e07_A          150 SLPVSPRLQLS--NGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHA  227 (642)
T ss_pred             ECCCCCceEEc--CCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEc
Confidence               22333333  345789999999999999999999998873 56688888866654431 112234567899999996


Q ss_pred             CCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCC
Q psy7040         247 PDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG  326 (716)
Q Consensus       247 p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~  326 (716)
                      .    +.|...+.+..  .+.    ..    .....+.|.++...+.+.|+|.|.|..|....+... .+.+..+...|.
T Consensus       228 ~----g~p~~~i~W~~--~g~----~i----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~-~v~v~~~~~~p~  292 (642)
T 1e07_A          228 A----SNPPAQYSWFV--NGT----FQ----QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT-TITVYAEPPKPF  292 (642)
T ss_pred             C----CCCCcEEEEEE--CCe----Ec----ccCCceEEecccccCCeEEEEEEEeCCCceEEeeeE-EEEEEccCCCCE
Confidence            2    22333333332  111    11    224679999999999999999999988765333222 122221111111


Q ss_pred             -CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC-ceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         327 -KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP-IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       327 -~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                       .+.+... ......+.|.|.....    + .  .+.|...+.. ..............+.|.++...+.+.|+|.|.|.
T Consensus       293 i~~~~~~~-~~~g~~v~l~C~~~~~----p-~--~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  364 (642)
T 1e07_A          293 ITSNNSNP-VEDEDAVALTCEPEIQ----N-T--TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNE  364 (642)
T ss_pred             EEcCCcee-EecCCcEEEEEECCCC----C-c--cEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCC
Confidence             0111111 1234568899887322    2 1  2333322211 00011111224567999999999999999999999


Q ss_pred             CCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEE
Q psy7040         405 GGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKL  484 (716)
Q Consensus       405 ~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l  484 (716)
                      .|..... .. ...+..   +|......+....+..|..+.|.|.+.+.|.+.+.|++++..+..           ...|
T Consensus       365 ~g~~~s~-~~-~l~V~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~-----------~~~L  428 (642)
T 1e07_A          365 LSVDHSD-PV-ILNVLY---GPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH-----------TQEL  428 (642)
T ss_pred             CCCccee-eE-EEEEEc---CCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC-----------CceE
Confidence            8753211 11 112222   222222224456788999999999999999999999999987643           2369


Q ss_pred             EECCCCCCCceeEEEEEEcCCCceeeEEEEEEE------EEEEEEeCC--CCCCCCceeeEEEEEEecCCCceeeeEEEc
Q psy7040         485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL------GCSLKWNPP--EDDGGAPIEYYMVEKMETDTGKVLIKWIRT  556 (716)
Q Consensus       485 ~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~------~v~l~W~~p--~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~  556 (716)
                      .|.++...|.|.|+|.|.|..|....+..+.+.      ...+.-...  ...+......|.+.     .+.+.+.|++.
T Consensus       429 ~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~-----~~~~~i~W~~~  503 (642)
T 1e07_A          429 FISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE-----AQNTTYLWWVN  503 (642)
T ss_pred             EEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECC-----CCCcEEEEEEC
Confidence            999999999999999999999877655433332      111110000  01112212223322     23455999988


Q ss_pred             cceeeeec---cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCcc-ceeeeccCCCCCCccceeeccceeEEEEEEeeEE
Q psy7040         557 NDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYL  632 (716)
Q Consensus       557 ~~~~~~~~---~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~-s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~  632 (716)
                      +.......   .......+.|.++...+.+.|+|.|.|..|.... ...+.|..+|..+. +. ...  +.+.   .|..
T Consensus       504 g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~-~~-~~~--~~v~---~g~~  576 (642)
T 1e07_A          504 GQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPI-IS-PPD--SSYL---SGAN  576 (642)
T ss_pred             CEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcce-ec-CCc--eeEE---cCCc
Confidence            76543221   1122368999999999999999999999986433 34555655444332 11 111  1110   1222


Q ss_pred             EEeeeeccCcee----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         633 QELHSSLMPISL----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       633 v~~~~~~~~~~~----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      +   .|.|.+.|    .+.|+++|..+..+     ..|.|.++...|.|.|+|.|.|..|....++.|.|..
T Consensus       577 ~---~l~C~~~g~p~p~v~W~~~g~~i~~~-----~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v  640 (642)
T 1e07_A          577 L---NLSCHSASNPSPQYSWRINGIPQQHT-----QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV  640 (642)
T ss_pred             E---EEEEEeccCCCCeEEEEECCEECccC-----ceEEECcccccCCeEEEEEEEecccCcceeEEEEEEE
Confidence            2   26676666    89999999988765     6899999999999999999999999999999888864

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=100.00  E-value=3.6e-31  Score=268.25  Aligned_cols=339  Identities=16%  Similarity=0.201  Sum_probs=250.7

Q ss_pred             CCCCCCceEEEEeCC-eEEEEecCCCCCCCCccceEEEEEEcCCCC---cEEEecccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKD-GCTLKWNKPKDDGGEPLEGYLVEKYDPETG---VWIPVGKTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~-s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~---~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      +.||..|.+...+.+ ++.|+|++|.   +.++.+|+|+++..++.   .|........+++.|.+|.|++.|.|+|+|.
T Consensus         2 p~~P~~l~~~~~~~~~sv~l~W~~~~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   78 (368)
T 1fnf_A            2 LSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTV   78 (368)
T ss_dssp             CCCCEEEEEEECSSSSCEEEEEECCS---CSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEEE
T ss_pred             CCCCcceEEEecCCCcEEEEEEeCCC---CCCceEEEEEEEECCCCCCceeEEEecCCcCEEEECCCCCCCEEEEEEEEE
Confidence            456666888887776 6999999985   24599999999876543   3555444556899999999999999999999


Q ss_pred             ecCccCCCccccceEEecCCCCcccccccccceecccCCC--CCCceE--------------EEEecCCccEEEEecccc
Q psy7040         131 NKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPC--GSGMVR--------------KVQHLDYNTKLGVRMAQR  194 (716)
Q Consensus       131 ~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~--G~~~~~--------------~~~~~~~~~~l~i~~l~~  194 (716)
                      |..|.+.++.........+|..+.........+.+.|.++  |.-..+              .+........+.|.+|.+
T Consensus        79 ~~~g~s~~~~~~~~~~~~~p~~l~~~~~~~~si~l~W~~p~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  158 (368)
T 1fnf_A           79 KDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLP  158 (368)
T ss_dssp             ETTEECCCEEEEECCCCCCCEEEEEESCCSSCEEEEEECCTTCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCT
T ss_pred             cCCCccCceeeeecCCCcCCceeEEEEcCCCeEEEEeeCCCCCCCcEEEEEEEECCCCCccEEEEcCCCcceEEecCCCC
Confidence            9999877653221111111222222222345689999987  222222              222344567899999999


Q ss_pred             CcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCC-CeEEc
Q psy7040         195 ADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG-RWTPA  273 (716)
Q Consensus       195 ~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~-~~~~~  273 (716)
                      +..|.|++.|.|..|.... .......+|.+|.+ +.+.....+++.|+|++|.   + .+.+|.|++...... .+.. 
T Consensus       159 ~t~Y~~~V~a~~~~g~s~~-~~~~~~~~~~~P~~-l~~~~~~~~sv~l~W~~p~---~-~i~~Y~v~~~~~~~~~~~~~-  231 (368)
T 1fnf_A          159 GTEYVVSVSSVYEQHESTP-LRGRQKTGLDSPTG-IDFSDITANSFTVHWIAPR---A-TITGYRIRHHPEHFSGRPRE-  231 (368)
T ss_dssp             TCEEEEEEEEEETTEECCC-EEEEEECCCCCCEE-EEEESCCSSEEEEEEECCS---S-CCSEEEEEEECSCCSSCCEE-
T ss_pred             CCEEEEEEEEEeCCCCCCC-eEeeecCCCCCCCc-cEEEEccCCEEEEEEeCCC---C-CcCEEEEEEecCCCCCCccE-
Confidence            9999999999999886433 44455667777776 7888888899999999864   2 589999999876542 2222 


Q ss_pred             cccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCC
Q psy7040         274 GETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGG  353 (716)
Q Consensus       274 ~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~  353 (716)
                      .........+.+.+|.+++.|.|+|.|.|..|.+..+..    ...   ..|.+|.++.+...+.+++.|+|.+|..   
T Consensus       232 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~----~~~---t~p~~P~~l~~~~~~~~sv~l~W~~p~~---  301 (368)
T 1fnf_A          232 DRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG----QQS---TVSDVPRDLEVVAATPTSLLISWDAPAV---  301 (368)
T ss_dssp             EEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEEE----EEE---CCCCSCEEEEEEEEETTEEEEEEECCSS---
T ss_pred             EEeCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCcccc----ccc---CCCCCCCeeEEEecCCCEEEEEeeCCCC---
Confidence            222345789999999999999999999999887655432    222   4577888999998999999999999654   


Q ss_pred             ccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCC
Q psy7040         354 SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT  414 (716)
Q Consensus       354 ~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~  414 (716)
                       .+.+|.|+++..+................+.+.+|.+++.|.|+|+|.|..|.|..+...
T Consensus       302 -~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~s~~~  361 (368)
T 1fnf_A          302 -TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKP  361 (368)
T ss_dssp             -CCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEECCCSSSCCBCCC
T ss_pred             -ccceEEEEEEECCCCCccEEEEcCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCcccCce
Confidence             488999999987644333334456678899999999999999999999999999877643

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=100.00  E-value=1.5e-30  Score=264.24  Aligned_cols=338  Identities=15%  Similarity=0.187  Sum_probs=249.8

Q ss_pred             CCCCCCCceEEEEeCC-eEEEEecCCCCCCCCccceEEEEEEcCCCC---cEEEecccCCCeEEecCCCCCcEEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIHKD-GCTLKWNKPKDDGGEPLEGYLVEKYDPETG---VWIPVGKTREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~-s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~---~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      ++.||.+|.+...+.+ ++.|+|++|..   ..+.+|+|+|+..++.   .+........+++.|.+|.|++.|.|+|+|
T Consensus         2 P~~~P~~l~~~~~~~~~sv~l~W~~~~~---~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   78 (375)
T 3t1w_A            2 PLSPPTNLHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT   78 (375)
T ss_dssp             CCCCCEEEEEEEETTTTEEEEEEECCSC---SSCCEEEEEEEETTCTTSCCEEEEEETTCCEEEECCCCTTCCEEEEEEE
T ss_pred             CCCCCCccEEEecCCCeEEEEEEeCCCC---CCeeeEEEEEEECCCCCCcceeEEcCCCccEEEEcCCcCCCEEEEEEEE
Confidence            4567777888899999 99999998752   2499999999876532   344333445689999999999999999999


Q ss_pred             EecCccCCCccccceEEecCCCCcccccccccceecccCCC--CCCceE--------------EEEecCCccEEEEeccc
Q psy7040         130 LNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPC--GSGMVR--------------KVQHLDYNTKLGVRMAQ  193 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~--G~~~~~--------------~~~~~~~~~~l~i~~l~  193 (716)
                      .|..|.+.+..........+|..+.........+.+.|.++  |.-..+              ..........+.|.+|.
T Consensus        79 ~~~~g~s~~~~~~~~~~~p~p~~l~~~~~~~~si~l~W~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~  158 (375)
T 3t1w_A           79 VKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLE  158 (375)
T ss_dssp             EETTEECCCEEEEECCCCCCCSCCEEECCCSSEEEEECCCCCCTTEEEEEEEEEESSSCCSCEEEEECTTCCEEEEECCC
T ss_pred             EcCCCCCCcEEeeEcCCCCCCceEEEEecCCCeEEEEEECCCCCCceEEEEEEEECCCCCceeEEEcCCCcceEEEeCCC
Confidence            99988877654332211122222222233445689999988  212222              22334456789999999


Q ss_pred             cCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCC-CCeEE
Q psy7040         194 RADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT-GRWTP  272 (716)
Q Consensus       194 ~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~  272 (716)
                      ++..|.|++.|.|..|...... +.....|.+|.+ +.+.....+++.|+|++|..   ..+.+|.|+++.... ..|..
T Consensus       159 p~t~Y~~~V~a~~~~g~s~~s~-~~~~t~~~~p~~-l~~~~~~~~si~l~W~~p~~---~~i~~Y~v~~~~~~~~~~~~~  233 (375)
T 3t1w_A          159 PGIDYDISVITLINGGESAPTT-LTQQTAVPPPTD-LRFTNIGPDTMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAE  233 (375)
T ss_dssp             TTCEEEEEEEEEETTEECCCEE-EEEECCCCCCEE-EEEESCCSSCEEEEEECCSS---CCCCEEEEEEEEGGGTTCCEE
T ss_pred             CCCEEEEEEEEEeCCcccCCee-eeeecCCCCCce-eEEEecccCEEEEEEcCCCC---CCccEEEEEEEeCCCCCCcEE
Confidence            9999999999999998755444 333345556666 78887889999999998642   358999999987643 33433


Q ss_pred             ccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCC
Q psy7040         273 AGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNG  352 (716)
Q Consensus       273 ~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~  352 (716)
                      .. .......+.+.+|.+++.|.|+|+|.|..|.+.+....    ..   ..|.+|.++.+...+.+++.|+|.+|.   
T Consensus       234 ~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~----~~---t~p~~P~~l~~~~~~~~sv~l~W~~p~---  302 (375)
T 3t1w_A          234 LS-ISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR----QK---TGLDSPTGIDFSDITANSFTVHWIAPR---  302 (375)
T ss_dssp             EE-ECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEE----EE---CCCCCCEEEEEESCCSSCEEEEEECCS---
T ss_pred             EE-cCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCceeeE----Ee---cCCCCCCccEeeeccCCEEEEEECCCC---
Confidence            32 23456899999999999999999999988877554322    22   357788899998889999999999963   


Q ss_pred             CccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCC
Q psy7040         353 GSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  411 (716)
Q Consensus       353 ~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s  411 (716)
                       +.+.+|.|+++..+...............++.|.+|.+++.|.|+|+|.|..|.|++.
T Consensus       303 -~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~  360 (375)
T 3t1w_A          303 -ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL  360 (375)
T ss_dssp             -SCCSEEEEEEEETTCCSSCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             -cceeeEEEEEEECCCCCcceeEEcCCCccEEEECCCCCCCEEEEEEEEECCCCCCCce
Confidence             3689999999987642333334455678899999999999999999999999988654

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.98  E-value=1.6e-29  Score=256.07  Aligned_cols=346  Identities=16%  Similarity=0.212  Sum_probs=242.6

Q ss_pred             CCCCCCCCeEEeEEeCC-eEEEEEECCCCCCCCccceEEEEEEeCCCC---CeEEccccCcccceEEEcCCCCCCeEEEE
Q psy7040         222 KPSPPGGPLKVSNVHAE-GVTLDWKVPDDDGGQPIEKYVVDKMDEATG---RWTPAGETEGPVTGLEVEGLIPNHKYKFR  297 (716)
Q Consensus       222 ~p~~p~~~~~~~~~~~~-~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~p~~~y~~~  297 (716)
                      ||.+|.+ +.+...... ++.|+|++|..   .++.+|.|+++.....   .|....  .....++.+.+|.|++.|.|+
T Consensus         1 Pp~~P~~-l~~~~~~~~~sv~l~W~~~~~---~~i~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~   74 (368)
T 1fnf_A            1 PLSPPTN-LHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQGNSLEEVV--HADQSSCTFDNLSPGLEYNVS   74 (368)
T ss_dssp             CCCCCEE-EEEEECSSSSCEEEEEECCSC---SSCCEEEEEEEETTTCSSCCEEEEE--CTTCCEEECCCCCTTSCEEEE
T ss_pred             CCCCCcc-eEEEecCCCcEEEEEEeCCCC---CCceEEEEEEEECCCCCCceeEEEe--cCCcCEEEECCCCCCCEEEEE
Confidence            5778877 788877665 59999998652   3689999999876543   233322  345789999999999999999


Q ss_pred             EEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC-ceEEEee
Q psy7040         298 VRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP-IWEKCAQ  376 (716)
Q Consensus       298 v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~-~~~~~~~  376 (716)
                      |.|.|..|.+.+...   . ..   ..+.+|.++.+...+.+++.|+|.+|..   +.+.+|.|+++..+.. .|... .
T Consensus        75 V~a~~~~g~s~~~~~---~-~~---~~~~~p~~l~~~~~~~~si~l~W~~p~~---~~~~~Y~v~~~~~~~~~~~~~~-~  143 (368)
T 1fnf_A           75 VYTVKDDKESVPISD---T-II---PAVPPPTDLRFTNIGPDTMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAEL-S  143 (368)
T ss_dssp             EEEEETTEECCCEEE---E-EC---CCCCCCEEEEEESCCSSCEEEEEECCTT---CCCSEEEEEEEETTCTTCCEEE-E
T ss_pred             EEEEcCCCccCceee---e-ec---CCCcCCceeEEEEcCCCeEEEEeeCCCC---CCCcEEEEEEEECCCCCccEEE-E
Confidence            999999887655422   1 11   2234788999998899999999999732   3689999999976543 34433 3


Q ss_pred             ecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCC
Q psy7040         377 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP  456 (716)
Q Consensus       377 ~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~  456 (716)
                      ......++.+.+|.+++.|.|+|+|.|..|.+.+..    ......+.+|.                             
T Consensus       144 ~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~----~~~~~~~~~P~-----------------------------  190 (368)
T 1fnf_A          144 ISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR----GRQKTGLDSPT-----------------------------  190 (368)
T ss_dssp             ECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE----EEEECCCCCCE-----------------------------
T ss_pred             cCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeE----eeecCCCCCCC-----------------------------
Confidence            356778999999999999999999999988654311    11111111111                             


Q ss_pred             eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCceee
Q psy7040         457 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEY  536 (716)
Q Consensus       457 ~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~  536 (716)
                                                .+.+..+...                         ++.|+|++|.    +.+.+
T Consensus       191 --------------------------~l~~~~~~~~-------------------------sv~l~W~~p~----~~i~~  215 (368)
T 1fnf_A          191 --------------------------GIDFSDITAN-------------------------SFTVHWIAPR----ATITG  215 (368)
T ss_dssp             --------------------------EEEEESCCSS-------------------------EEEEEEECCS----SCCSE
T ss_pred             --------------------------ccEEEEccCC-------------------------EEEEEEeCCC----CCcCE
Confidence                                      1111222111                         8999999874    34899


Q ss_pred             EEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee--ccCCCCCCccc
Q psy7040         537 YMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV--VTDKPSAPEGP  614 (716)
Q Consensus       537 y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~--v~~~p~~~~~~  614 (716)
                      |.|++........ ..+....         .....+.+.+|.+++.|.|+|+|.|..|.+..+....  .+.+|..+. +
T Consensus       216 Y~v~~~~~~~~~~-~~~~~~~---------~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~~~~t~p~~P~~l~-~  284 (368)
T 1fnf_A          216 YRIRHHPEHFSGR-PREDRVP---------HSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLE-V  284 (368)
T ss_dssp             EEEEEECSCCSSC-CEEEEEE---------TTCCEEEEESCCTTCEEEEEEEEEETTEECCCEEEEEECCCCSCEEEE-E
T ss_pred             EEEEEecCCCCCC-ccEEEeC---------CCcCEEEECCCCCCCEEEEEEEEEeCCccCCcccccccCCCCCCCeeE-E
Confidence            9999987653110 1111111         1238899999999999999999999999888765433  355565555 6


Q ss_pred             eeeccceeEEEEE-----EeeEEEEeeeeccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         615 IQWLLTLTDVTWE-----ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       615 ~~~~~~~v~l~w~-----i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                      ..++.+++.|+|.     +.+|.|.++...-..  ..      ..+.  .......+.|.+|.+++.|.|+|.|.|..|.
T Consensus       285 ~~~~~~sv~l~W~~p~~~i~~Y~v~~~~~~~~~--~~------~~~~--~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~  354 (368)
T 1fnf_A          285 VAATPTSLLISWDAPAVTVRYYRITYGETGGNS--PV------QEFT--VPGSKSTATISGLKPGVDYTITVYAVTGRGD  354 (368)
T ss_dssp             EEEETTEEEEEEECCSSCCSEEEEEEEETTCCS--CC------EEEE--EETTCCEEEECSCCTTCCEEEEEEEECCCSS
T ss_pred             EecCCCEEEEEeeCCCCccceEEEEEEECCCCC--cc------EEEE--cCCCeeEEEecCCCCCCEEEEEEEEeCCCCc
Confidence            6678899999999     789999876532100  00      0000  1123468999999999999999999999998


Q ss_pred             ceee
Q psy7040         690 DQVF  693 (716)
Q Consensus       690 ~~~s  693 (716)
                      +..+
T Consensus       355 g~~s  358 (368)
T 1fnf_A          355 SPAS  358 (368)
T ss_dssp             SCCB
T ss_pred             Cccc
Confidence            8554

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.98  E-value=2e-31  Score=288.07  Aligned_cols=412  Identities=17%  Similarity=0.186  Sum_probs=271.9

Q ss_pred             CCCCCCCcEEEEEeCCeEEEEeeCCCCCCCcceeeEEEEEcc--------------------------------------
Q psy7040          12 PAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDR--------------------------------------   53 (716)
Q Consensus        12 p~~p~~~l~~~~~~~~~~~~~W~~p~~~~~~~~~~y~~~~~~--------------------------------------   53 (716)
                      |..+|.+|.+...+..++.++|+++.+.+  .+..|.+.+..                                      
T Consensus       102 pP~~P~nl~c~~~~~~~~~~~W~~~~~~~--~~~~y~l~~~~~~~~~~~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n  179 (589)
T 3l5h_A          102 PPEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAEN  179 (589)
T ss_dssp             CCCCCEEEEEEEETTSCEEEEEECCSCCS--SCEEEEECCBCSSSBCCCEECBTTBSSCCBCCSCCCSSSCEEECEEEEE
T ss_pred             CCCCCEeeEEEECCCceEEEEECCCCcCC--cCceEEEEEEEcCCCcccCCCCCCCcEEEEECCCCchheeEEEEEEEEe
Confidence            44445578888889999999999986432  36677665421                                      


Q ss_pred             ------------------CCCCCCCceEE--EEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc----cCC
Q psy7040          54 ------------------GLDPEGPLEVS--NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK----TRE  109 (716)
Q Consensus        54 ------------------~~~p~~~l~~~--~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~----~~~  109 (716)
                                        .+.||..+.+.  ..+.+++.|+|++|...+ .++..|+|+|+..+...|..+..    ...
T Consensus       180 ~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~-~~~~~Y~v~~~~~~~~~w~~~~~~~~~~~~  258 (589)
T 3l5h_A          180 ALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKS-VIILKYNIQYRTKDASTWSQIPPEDTASTR  258 (589)
T ss_dssp             SSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGG-TSCEEEEEEEEETTCSCCBCCCTTSSCSCC
T ss_pred             CCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCC-eeeEEEEEEECCCCCCCcEEEccccCcCce
Confidence                              12345556663  457889999999987543 46899999999988888876532    224


Q ss_pred             CeEEecCCCCCcEEEEEEEEEecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEE
Q psy7040         110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGV  189 (716)
Q Consensus       110 ~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i  189 (716)
                      +++.|.+|.|++.|.|+|+|.|..|.+.+|.....+....+                                       
T Consensus       259 ~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~---------------------------------------  299 (589)
T 3l5h_A          259 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY---------------------------------------  299 (589)
T ss_dssp             SEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCC---------------------------------------
T ss_pred             eEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccC---------------------------------------
Confidence            78999999999999999999999988766543332211100                                       


Q ss_pred             eccccCcceEEEEEEEeCCCCceeEEEEEEecCC-CCCCCCeEE----eEEeCCeEEEEEECCC-CCCCCccceEEEEEE
Q psy7040         190 RMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP-SPPGGPLKV----SNVHAEGVTLDWKVPD-DDGGQPIEKYVVDKM  263 (716)
Q Consensus       190 ~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p-~~p~~~~~~----~~~~~~~~~l~W~~p~-~~~~~~~~~y~v~~~  263 (716)
                                                    ...| .+|.. +..    ......++.|.|+++. ...+..+.+|.|.+.
T Consensus       300 ------------------------------~~~P~~~p~~-~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~  348 (589)
T 3l5h_A          300 ------------------------------EDRPSKAPSF-WYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLT  348 (589)
T ss_dssp             ------------------------------CCCCCSCCCE-EEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEEC
T ss_pred             ------------------------------ccCCCCCCcE-EEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEe
Confidence                                          0123 33332 222    2345688999999632 233447999999986


Q ss_pred             eCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEE
Q psy7040         264 DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVEL  343 (716)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l  343 (716)
                      .... .|...   ......+.+  |.+++.|.|+|.|.|..|.+..+...   .......+|.++.++.+... ++++.|
T Consensus       349 ~~~~-~~~~~---~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~~---~~~~~~~~~~p~~~l~~~~~-~~si~l  418 (589)
T 3l5h_A          349 RWKS-HLQNY---TVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLT---IPACDFQATHPVMDLKAFPK-DNMLWV  418 (589)
T ss_dssp             CTTS-CCCBC---CCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCCC---CCCTTCCCCSCCCSCEEEEC-SSSEEE
T ss_pred             cCCC-Cceee---ccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEEE---eecccccCCCCcceEEEEEC-CCeEEE
Confidence            5443 23222   223455555  88999999999999999988776543   11122234556678888755 689999


Q ss_pred             EecCCCCCCCccceEEEEEEeecCCCce--EEEee-ecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEee
Q psy7040         344 AWTPPEQNGGSPIVGYIIEKKEKYSPIW--EKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR  420 (716)
Q Consensus       344 ~W~~p~~~~~~~i~~y~v~~~~~~~~~~--~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~  420 (716)
                      +|.+|..    .+.+|.|+|+..+....  ..... .......+.+.+|.+++.|.|+|+|.|..|.+..+..    ...
T Consensus       419 ~W~~p~~----~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~g~g~~~~~----~~~  490 (589)
T 3l5h_A          419 EWTTPRE----SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI----KAY  490 (589)
T ss_dssp             ECCCCSS----CCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSCCCSSSEEEEEECBEETTEECCCEEE----EEE
T ss_pred             EEECCCC----CccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhccccCcEEEEEEEEEeCCcccCCEEE----EEE
Confidence            9999753    58899999987653211  11111 2333455677999999999999999999988765321    111


Q ss_pred             cCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEE
Q psy7040         421 AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       421 ~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      ....+|...                          +                          .+.+..+...        
T Consensus       491 t~~~~P~~p--------------------------p--------------------------~l~~~~~~~~--------  510 (589)
T 3l5h_A          491 LKQAPPSKG--------------------------P--------------------------TVRTKKVGKN--------  510 (589)
T ss_dssp             SSCCCCSSC--------------------------C--------------------------CCCEECCCSS--------
T ss_pred             eccCCCCCC--------------------------C--------------------------eEEEeecccc--------
Confidence            111111100                          0                          0011111111        


Q ss_pred             EEcCCCceeeEEEEEEEEEEEEEeCCC-CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCC
Q psy7040         501 VKNSWGTDKGTAKVTVLGCSLKWNPPE-DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR  579 (716)
Q Consensus       501 a~n~~g~~~~s~~~~v~~v~l~W~~p~-~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~  579 (716)
                                       ++.|+|.++. ...++.+.+|.|++.....    ..|....        ......+.|.+|++
T Consensus       511 -----------------sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~----~~~~~~~--------~~~~~~~~~~~L~p  561 (589)
T 3l5h_A          511 -----------------EAVLEWDQLPVDVQNGFIRNYTIFYRTIIG----NETAVNV--------DSSHTEYTLSSLTS  561 (589)
T ss_dssp             -----------------CBEEBCCCCCHHHHCSCEEEEEECCBCSSC----CCCCEEE--------CTTCCBCCBCSCCS
T ss_pred             -----------------eEEEEecCCCHHHcCccceeEEEEEEeCCC----CeEEEEe--------CCcccEEEecCCCC
Confidence                             8999999853 3334569999999987765    3331111        11238899999999


Q ss_pred             CCeEEEEEEEEcCCCCCccceeeec
Q psy7040         580 SDTAQYTVTATNSQGKDQVFIEVVV  604 (716)
Q Consensus       580 ~~~y~~~v~a~n~~G~~~~s~~~~v  604 (716)
                      ++.|.|+|+|.|..| |..+..+.+
T Consensus       562 ~t~Y~~~V~A~n~~G-~~~S~~~~~  585 (589)
T 3l5h_A          562 DTLYMVRMAAYTDEG-GKDGPEFTF  585 (589)
T ss_dssp             SCCEECCEEEEETTE-EEECCCCEE
T ss_pred             CCEEEEEEEEEeCCC-CCCCCCeEE
Confidence            999999999999999 777765543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=286.81  Aligned_cols=284  Identities=19%  Similarity=0.226  Sum_probs=214.1

Q ss_pred             EEEccCCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEE
Q psy7040          49 VEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVK  128 (716)
Q Consensus        49 ~~~~~~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~  128 (716)
                      +.....+.|+.++.+..++.+++.|+|.++..+++.++.+|.|+|+.. ...|.........++.|.+|.+++.|.|+|+
T Consensus       256 l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  334 (731)
T 2v5y_A          256 LVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA-SGSWNDRQPVDSTSYKIGHLDPDTEYEISVL  334 (731)
T ss_dssp             EEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEES-SSSCEEEEECCSSEEEECSCCTTCEEEEEEE
T ss_pred             EEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEEC-CCCceEEeccCcceEEEeCCCCCCEEEEEEE
Confidence            344445566777888889999999999988766667899999999875 4567766665668999999999999999999


Q ss_pred             EE--ecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         129 AL--NKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       129 a~--~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      |.  |..|.+.++......+..                                                          
T Consensus       335 A~~~N~~G~s~~S~~~~~~t~~----------------------------------------------------------  356 (731)
T 2v5y_A          335 LTRPGEGGTGSPGPALRTRTKC----------------------------------------------------------  356 (731)
T ss_dssp             EECSSTTCSCCBCCCEEEECCC----------------------------------------------------------
T ss_pred             EEecCCCccccCCCcEEeeecC----------------------------------------------------------
Confidence            99  999988877554332211                                                          


Q ss_pred             CCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCC-CCccceEEEEEEeCCCCCeEEc----cccCcccc
Q psy7040         207 INGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDG-GQPIEKYVVDKMDEATGRWTPA----GETEGPVT  281 (716)
Q Consensus       207 ~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~-~~~~~~y~v~~~~~~~~~~~~~----~~~~~~~~  281 (716)
                                   ..+|.+|.+ +.+.....+++.|+|++|.... ..++.+|.|+++......+...    ........
T Consensus       357 -------------~~p~~~P~~-~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~  422 (731)
T 2v5y_A          357 -------------ADPMRGPRK-LEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHP  422 (731)
T ss_dssp             -------------CCCSCCCEE-EEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSC
T ss_pred             -------------CCCCCCCce-eEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcc
Confidence                         124567776 7888889999999999875432 2357799999876654433211    13345678


Q ss_pred             eEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCC--CcEEEeeeCCeEEEEecCCCCCCCccceEE
Q psy7040         282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPG--TPEIKDFDTDFVELAWTPPEQNGGSPIVGY  359 (716)
Q Consensus       282 ~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~--~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y  359 (716)
                      .+.|.+|.|++.|.|+|.|.|..|.+. +.   .+.+.+...+|.+|.  .+.... ..+++.|+|.+|...+| .|.+|
T Consensus       423 ~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~---~~~~~T~~~~P~~p~~~~~~~~~-~~~si~l~W~~P~~~~g-~i~~Y  496 (731)
T 2v5y_A          423 QHTITNLSPYTNVSVKLILMNPEGRKE-SQ---ELIVQTDEDLPGAVPTESIQGST-FEEKIFLQWREPTQTYG-VITLY  496 (731)
T ss_dssp             EEEECSCCSSCEEEEEEEEECSSCEEE-CC---CEEEECCCCCCCCCCTTTCEEEE-ETTEEEEECCCCSCCSS-CCCEE
T ss_pred             eEEECCCCCCCEEEEEEEEEcCCCCCC-Cc---eEEEEccCCCCCCCCcceEEeee-cCCeEEEEEcCCCCCCC-Cccce
Confidence            999999999999999999999999863 33   355555667777664  455443 47899999999876544 89999


Q ss_pred             EEEEeecCCC-------ceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCC
Q psy7040         360 IIEKKEKYSP-------IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  411 (716)
Q Consensus       360 ~v~~~~~~~~-------~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s  411 (716)
                      +|+|+..+..       .+...........+++|.+|.|++.|.|+|+|.|..|.|.++
T Consensus       497 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s  555 (731)
T 2v5y_A          497 EITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA  555 (731)
T ss_dssp             EEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCc
Confidence            9999875422       112223345677899999999999999999999999988776

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.97  E-value=3.8e-29  Score=253.92  Aligned_cols=349  Identities=17%  Similarity=0.215  Sum_probs=246.1

Q ss_pred             CCCCCCCCeEEeEEeCC-eEEEEEECCCCCCCCccceEEEEEEeCCCC---CeEEccccCcccceEEEcCCCCCCeEEEE
Q psy7040         222 KPSPPGGPLKVSNVHAE-GVTLDWKVPDDDGGQPIEKYVVDKMDEATG---RWTPAGETEGPVTGLEVEGLIPNHKYKFR  297 (716)
Q Consensus       222 ~p~~p~~~~~~~~~~~~-~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~p~~~y~~~  297 (716)
                      |+.+|.+ +.+.....+ ++.|+|++|..  + .+.+|.|++......   .|...  ......++.|.+|.|++.|.|+
T Consensus         2 P~~~P~~-l~~~~~~~~~sv~l~W~~~~~--~-~~~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~   75 (375)
T 3t1w_A            2 PLSPPTN-LHLEANPDTGVLTVSWERSTT--P-DITGYRITTTPTNGQQGNSLEEV--VHADQSSCTFDNLSPGLEYNVS   75 (375)
T ss_dssp             CCCCCEE-EEEEEETTTTEEEEEEECCSC--S-SCCEEEEEEEETTCTTSCCEEEE--EETTCCEEEECCCCTTCCEEEE
T ss_pred             CCCCCCc-cEEEecCCCeEEEEEEeCCCC--C-CeeeEEEEEEECCCCCCcceeEE--cCCCccEEEEcCCcCCCEEEEE
Confidence            5677777 888888888 99999998643  2 589999999876432   23221  2245789999999999999999


Q ss_pred             EEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeee
Q psy7040         298 VRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT  377 (716)
Q Consensus       298 v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~  377 (716)
                      |+|.|..|.+.+...   ..   ....| +|.++.+...+.+++.|+|.+|.   ++.+.+|.|+++..+..........
T Consensus        76 V~a~~~~g~s~~~~~---~~---~~~~p-~p~~l~~~~~~~~si~l~W~~~~---~~~i~~Y~v~~~~~~~~~~~~~~~~  145 (375)
T 3t1w_A           76 VYTVKDDKESVPISD---TI---IPEVP-QLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFV  145 (375)
T ss_dssp             EEEEETTEECCCEEE---EE---CCCCC-CCSCCEEECCCSSEEEEECCCCC---CTTEEEEEEEEEESSSCCSCEEEEE
T ss_pred             EEEEcCCCCCCcEEe---eE---cCCCC-CCceEEEEecCCCeEEEEEECCC---CCCceEEEEEEEECCCCCceeEEEc
Confidence            999998876654332   12   12344 48899999999999999999864   3479999999998764433333345


Q ss_pred             cCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCe
Q psy7040         378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT  457 (716)
Q Consensus       378 ~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~  457 (716)
                      .....++.+.+|.+++.|.|+|+|.|..|.+.++....    ...+.+|.                              
T Consensus       146 ~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~----~t~~~~p~------------------------------  191 (375)
T 3t1w_A          146 DSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQ----QTAVPPPT------------------------------  191 (375)
T ss_dssp             CTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEEEE----ECCCCCCE------------------------------
T ss_pred             CCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeeeee----ecCCCCCc------------------------------
Confidence            66788999999999999999999999999776543211    00000111                              


Q ss_pred             EEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCceeeE
Q psy7040         458 KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYY  537 (716)
Q Consensus       458 ~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y  537 (716)
                                               .+.+......                         ++.|+|++|.   ++.+.+|
T Consensus       192 -------------------------~l~~~~~~~~-------------------------si~l~W~~p~---~~~i~~Y  218 (375)
T 3t1w_A          192 -------------------------DLRFTNIGPD-------------------------TMRVTWAPPP---SIDLTNF  218 (375)
T ss_dssp             -------------------------EEEEESCCSS-------------------------CEEEEEECCS---SCCCCEE
T ss_pred             -------------------------eeEEEecccC-------------------------EEEEEEcCCC---CCCccEE
Confidence                                     1112222222                         8999999974   2448999


Q ss_pred             EEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee--ccCCCCCCccce
Q psy7040         538 MVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV--VTDKPSAPEGPI  615 (716)
Q Consensus       538 ~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~--v~~~p~~~~~~~  615 (716)
                      .|++......   ..|....       .......+.+.+|.+++.|.|+|+|.|..|.+.+.....  .+.+|..+. +.
T Consensus       219 ~v~~~~~~~~---~~~~~~~-------~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~~~t~p~~P~~l~-~~  287 (375)
T 3t1w_A          219 LVRYSPVKNE---EDVAELS-------ISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGID-FS  287 (375)
T ss_dssp             EEEEEEGGGT---TCCEEEE-------ECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEE-EE
T ss_pred             EEEEEeCCCC---CCcEEEE-------cCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCceeeEEecCCCCCCccE-ee
Confidence            9999876531   1121111       011238899999999999999999999999887765443  345555555 56


Q ss_pred             eeccceeEEEEE-----EeeEEEEeeeeccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         616 QWLLTLTDVTWE-----ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       616 ~~~~~~v~l~w~-----i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      .++.+++.|+|.     +.+|.|.++.....          +.............+.|.+|.+++.|.|+|.|.|..|.+
T Consensus       288 ~~~~~sv~l~W~~p~~~~~~Y~v~~~~~~~~----------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s  357 (375)
T 3t1w_A          288 DITANSFTVHWIAPRATITGYRIRHHPEHFS----------GRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREES  357 (375)
T ss_dssp             SCCSSCEEEEEECCSSCCSEEEEEEEETTCC----------SSCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTEEC
T ss_pred             eccCCEEEEEECCCCcceeeEEEEEEECCCC----------CcceeEEcCCCccEEEECCCCCCCEEEEEEEEECCCCCC
Confidence            677899999999     78999987653210          100011111234689999999999999999999999998


Q ss_pred             eeeE
Q psy7040         691 QVFI  694 (716)
Q Consensus       691 ~~s~  694 (716)
                      ....
T Consensus       358 ~p~s  361 (375)
T 3t1w_A          358 PLLI  361 (375)
T ss_dssp             CCEE
T ss_pred             Ccee
Confidence            5443

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.97  E-value=1.3e-27  Score=244.33  Aligned_cols=297  Identities=22%  Similarity=0.284  Sum_probs=228.4

Q ss_pred             CeEEecCCCCCcEEEEEEEEEecCccCCCccccceEEecCC----CCc---ccccccccceecccCCC--------C---
Q psy7040         110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP----YSK---YTSVSSLDSHKRSNQPC--------G---  171 (716)
Q Consensus       110 ~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~p----~~~---~~~~~~~~~~~~~~~p~--------G---  171 (716)
                      ..|.|.++...+.+.|+|.|.|..|....+ ....+...+.    ...   .......+.|.+.+.|+        |   
T Consensus        63 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l  141 (389)
T 2jll_A           63 SSLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVL  141 (389)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECSSCEEEEE-EEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEES
T ss_pred             ceEEEcccChhhCEEEEEEEEeCCCCcceE-EEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccC
Confidence            589999999999999999999998864322 2222221111    111   11223346687777665        2   


Q ss_pred             ---CCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCC
Q psy7040         172 ---SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPD  248 (716)
Q Consensus       172 ---~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~  248 (716)
                         ...++.+...+....|.|.++...|.|.|+|.|.|..|.....+.+.+..+|.+|.. +.+......++.|.|.+|.
T Consensus       142 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~-~~~~~~~~~~~~l~w~~p~  220 (389)
T 2jll_A          142 PAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPD  220 (389)
T ss_dssp             SCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEE-EEEEEECSSCEEEEEECCS
T ss_pred             CcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcc-eEEeeccCCEEEEEEeCCC
Confidence               234677777777889999999999999999999999999988899999999998876 7788888899999999887


Q ss_pred             CCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCC
Q psy7040         249 DDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP  328 (716)
Q Consensus       249 ~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p  328 (716)
                      .+++.++..|.+++...+...|...... .....+.|.+|.+++.|.|+|.|.|..|.+.++......+  .+..+|.+|
T Consensus       221 ~~~g~pi~~y~v~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t--~~~~~p~~p  297 (389)
T 2jll_A          221 SHGGVPIHHYQVDVKEVASEIWKIVRSH-GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT--LPVREPSPP  297 (389)
T ss_dssp             CCTTSCEEEEEEEEEETTCSCCEEEECS-TTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEEC--CCCCCCCCC
T ss_pred             CCCCcceEEEEEEEEECCCcccEEeecc-CCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEe--cCCCCCCCC
Confidence            7788889999999998888888755432 4567899999999999999999999999887776642222  222356666


Q ss_pred             CCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040         329 GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  408 (716)
Q Consensus       329 ~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~  408 (716)
                       .+.....+.+++.|+|.+|. ++++++.+|.|+|+..+...|...........++.|.+|.+++.|.|+|+|.|..|.|
T Consensus       298 -~~~~~~~~~~~v~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s  375 (389)
T 2jll_A          298 -SIHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYS  375 (389)
T ss_dssp             -CEEEEEETTTEEEEEECCCC-CCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-CCBC
T ss_pred             -ccccccCcCCEEEEEEECCC-CCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEEEEEEEcCCcCC
Confidence             47777778999999999875 4566899999999987666676555566778899999999999999999999999998


Q ss_pred             CCCCC
Q psy7040         409 EPSDP  413 (716)
Q Consensus       409 ~~s~~  413 (716)
                      .++..
T Consensus       376 ~~s~~  380 (389)
T 2jll_A          376 EPTVY  380 (389)
T ss_dssp             CCEEE
T ss_pred             Cceee
Confidence            87754

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.96  E-value=2.4e-27  Score=266.59  Aligned_cols=581  Identities=15%  Similarity=0.108  Sum_probs=340.7

Q ss_pred             eEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC----------cEEEecccCCCeEEecCCCCCcE-EEEEEEEE
Q psy7040          62 EVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG----------VWIPVGKTREPEMDVTGLTPGHE-YKFRVKAL  130 (716)
Q Consensus        62 ~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~----------~~~~~~~~~~~~~~i~~L~~~~~-y~~~v~a~  130 (716)
                      .+......++.|.+..+...   +-....+.|...+..          ....   ....++.|.++++.+. |.|+|+|.
T Consensus       147 ~~~v~~G~~v~L~C~~~~~~---~~~~~~v~W~~~~~~~~~~~~~~~~r~~~---~~~g~L~I~~v~~~D~~g~Y~C~~~  220 (816)
T 3dmk_A          147 KEHVIRGNSAVIKCLIPSFV---ADFVEVVSWHTDEEENYFPGAEYDGKYLV---LPSGELHIREVGPEDGYKSYQCRTK  220 (816)
T ss_dssp             CEEEETTSCEEECCBCCHHH---HTTEEEEEEEETTSCEECBSSCBTTTEEE---CTTSCEEESSCCGGGSSCEEEEEEE
T ss_pred             cceEecCceEEEEECCCccc---cccEEEEEEEecCceEeccccCCCceEEE---ecCceEEEecCChhhccceeEEEEe
Confidence            34455677899999875311   111133444433221          1111   1235799999999998 99999999


Q ss_pred             ecCccC-CCccccceEEecC-----CCCc-----------ccccccccceecccCCC--------CCCc--eEEEEe---
Q psy7040         131 NKEGES-EPLETFSSIIARD-----PYSK-----------YTSVSSLDSHKRSNQPC--------GSGM--VRKVQH---  180 (716)
Q Consensus       131 ~~~g~~-~~s~~~~~~~~~~-----p~~~-----------~~~~~~~~~~~~~~~p~--------G~~~--~~~~~~---  180 (716)
                      +..+.. ..+.....+....     ++.+           .......+.|.+.+.|.        |.+.  ...+..   
T Consensus       221 ~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~  300 (816)
T 3dmk_A          221 HRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDR  300 (816)
T ss_dssp             ETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSS
T ss_pred             eeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCc
Confidence            754321 1111111122111     1111           01112235587777655        1111  111000   


Q ss_pred             -cCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEE
Q psy7040         181 -LDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV  259 (716)
Q Consensus       181 -~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~  259 (716)
                       ......|.|.+++..|+|.|+|.|.|..|..+....+.|..+|.....+.......+..+.|.|....    .+...+.
T Consensus       301 ~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g----~p~~~v~  376 (816)
T 3dmk_A          301 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTG----NPIKTVS  376 (816)
T ss_dssp             EEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEE----ECCCEEE
T ss_pred             eEeccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEec----cCCCEEE
Confidence             11356899999999999999999999999988888888876553322222344456788999998522    1222232


Q ss_pred             EEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCC---CCCCcEEEee
Q psy7040         260 VDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG---KPGTPEIKDF  336 (716)
Q Consensus       260 v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~---~p~~~~~~~~  336 (716)
                      +.  ..+    ...   ......+.|.++...+.+.|+|.|.|..|....+.   .+.+.....+|.   .+.+.  ...
T Consensus       377 W~--k~g----~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~---~l~v~~~~~~p~i~~~~~~~--~v~  442 (816)
T 3dmk_A          377 WM--KDG----KAI---GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASA---ELKLGGRFDPPVIRQAFQEE--TME  442 (816)
T ss_dssp             EE--ETT----EEC---SCCSSEEEESSCCGGGCEEEEEEEECSSCEEEECC---EEECCCSSCCCEEEEECCCE--EEC
T ss_pred             EE--ECC----EEC---CCCCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEE---EEEEccccCCCceEecCcce--EEc
Confidence            22  221    111   12346899999999999999999999877432222   122211111111   01111  122


Q ss_pred             eCCeEEEEecCCCCCCCccceEEEEEEeecC-----CCceEEEeeec---CCCCeEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040         337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-----SPIWEKCAQTE---GDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  408 (716)
Q Consensus       337 ~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-----~~~~~~~~~~~---~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~  408 (716)
                      .+..+.|.|.....    +..  .+.|...+     ...........   .....+.|.++...+.+.|+|.|.|..|..
T Consensus       443 ~G~~v~L~C~~~g~----p~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  516 (816)
T 3dmk_A          443 PGPSVFLKCVAGGN----PTP--EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA  516 (816)
T ss_dssp             SSSCEEEEEEEECS----SCC--EEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEE
T ss_pred             CCCCEEEEEEEecC----CCC--EEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeE
Confidence            34566777754211    111  12222221     01111111001   112358899999999999999999998754


Q ss_pred             CCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECC
Q psy7040         409 EPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD  488 (716)
Q Consensus       409 ~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~  488 (716)
                      ..+.   ...+   ..+|.+.  ......+..|+.+.|.|.+.+.|.+.+.|++++..+....+..+...   ..|.|.+
T Consensus       517 ~~~~---~l~V---~~~p~~~--~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~---~~l~i~~  585 (816)
T 3dmk_A          517 EHSA---KLNV---YGLPYIR--QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPN---GTLIIEN  585 (816)
T ss_dssp             EEEE---EEEE---CSSCEEC--CCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTT---SEEEESS
T ss_pred             EEEE---EEEE---ecCCeeE--ccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecC---CeEEEEe
Confidence            3221   1111   1244332  23456788999999999999999999999999998876666655432   3799999


Q ss_pred             CC-CCCceeEEEEEEcCCCcee-eEEEEEEEEEEEEEeCCC---C-CCCCcee--eEEEEEEecCCC-ceeeeEEEccce
Q psy7040         489 SK-RGDSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKWNPPE---D-DGGAPIE--YYMVEKMETDTG-KVLIKWIRTNDK  559 (716)
Q Consensus       489 l~-~~~~~~y~~~a~n~~g~~~-~s~~~~v~~v~l~W~~p~---~-~~~~~i~--~y~v~~~~~~~~-~~~~~w~~~~~~  559 (716)
                      +. ..|.|.|+|.|.|..|... ....+.+.     -.+..   . .......  .-.+.+.-...+ .+.+.|++.+..
T Consensus       586 v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~-----~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~  660 (816)
T 3dmk_A          586 VERNSDQATYTCVAKNQEGYSARGSLEVQVM-----VLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQA  660 (816)
T ss_dssp             CCHHHHCEEEEEEEEESSSCEEEEEEEEEEE-----CCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBC
T ss_pred             cCccccCEEEEEEEEECCCceeeeeEEEEEe-----cCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeE
Confidence            98 6899999999999998643 23333333     11100   0 0000011  112222221122 235899988765


Q ss_pred             eeeec------cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCC---CccceeeccceeEEEEEEee
Q psy7040         560 RVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA---PEGPIQWLLTLTDVTWEISN  630 (716)
Q Consensus       560 ~~~~~------~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~---~~~~~~~~~~~v~l~w~i~~  630 (716)
                      .....      .......+.|.++...+.+.|+|.|.|..|....+..+.|..+|..   |.......+..+.       
T Consensus       661 l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~-------  733 (816)
T 3dmk_A          661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAK-------  733 (816)
T ss_dssp             CCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEE-------
T ss_pred             cCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEE-------
Confidence            42111      1123467999999999999999999999998777766666555531   1101111233333       


Q ss_pred             EEEEeeeeccCcee----eEEEEeCCeEeeec---------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040         631 YLQELHSSLMPISL----ESQYLMNDKRVTID---------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  697 (716)
Q Consensus       631 y~v~~~~~~~~~~~----~~~W~~~~~~~~~~---------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~  697 (716)
                             |.|.+.|    .+.|++++..+...         .......|.|.++...|+|.|+|.|.|..|.+..+..+.
T Consensus       734 -------l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~  806 (816)
T 3dmk_A          734 -------VECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMI  806 (816)
T ss_dssp             -------EECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEE
T ss_pred             -------EEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEE
Confidence                   6677776    89999976543211         011225799999999999999999999999999888776


Q ss_pred             EecCC
Q psy7040         698 VTDKP  702 (716)
Q Consensus       698 v~~~p  702 (716)
                      ....+
T Consensus       807 ~~~~~  811 (816)
T 3dmk_A          807 SVQAH  811 (816)
T ss_dssp             EEEC-
T ss_pred             Eeecc
Confidence            65433

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.96  E-value=3.4e-26  Score=249.88  Aligned_cols=463  Identities=13%  Similarity=0.108  Sum_probs=292.9

Q ss_pred             ccEEEEeccccCcceEEEEEEEeCC-CCceeEEEEEEecCCCCCCCCe--EEeEEeCCeEEEEEECCCCCCCCccceEEE
Q psy7040         184 NTKLGVRMAQRADAGFYTVTAENIN-GKDSVEVEVIVLDKPSPPGGPL--KVSNVHAEGVTLDWKVPDDDGGQPIEKYVV  260 (716)
Q Consensus       184 ~~~l~i~~l~~~~~g~y~c~a~n~~-g~~~~~~~~~v~~~p~~p~~~~--~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v  260 (716)
                      +.+|.|.+++..|+|.|+|.+.|.. +.....+.|.|..++.+|....  ......++.+.|.|....     +...+.+
T Consensus        70 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-----p~~~v~W  144 (642)
T 1e07_A           70 NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPET-----QDATYLW  144 (642)
T ss_pred             CCcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEECCC-----CCeeEEE
Confidence            5689999999999999999999864 4446777788877665554200  112345677999999643     2223333


Q ss_pred             EEEe--CCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCC-CCCCCcEEEeee
Q psy7040         261 DKMD--EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQP-GKPGTPEIKDFD  337 (716)
Q Consensus       261 ~~~~--~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p-~~p~~~~~~~~~  337 (716)
                      ....  .........   ......+.|.++...+.+.|+|.|.|..|... +... .+.+......| ..|.+..  ...
T Consensus       145 ~~~g~~l~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~-s~~~-~l~V~~~p~~~~~~~~~~~--~~~  217 (642)
T 1e07_A          145 WVNNQSLPVSPRLQL---SNGNRTLTLFNVTRNDTASYKCETQNPVSARR-SDSV-ILNVLYGPDAPTISPLNTS--YRS  217 (642)
T ss_pred             EECCeECCCCCceEE---cCCCCEEEEeCCCcccCeeEEEEEecCCCCcc-cceE-EEEEEeCCCCcEEecCCcc--ccc
Confidence            2211  111111111   12246899999999999999999999877532 1111 12222111111 1122222  234


Q ss_pred             CCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCce
Q psy7040         338 TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH  417 (716)
Q Consensus       338 ~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~  417 (716)
                      +..+.|.|.....    +..  .+.|...+ .   .    -.....+.|.++...+.+.|+|.|.|..|....+... .+
T Consensus       218 G~~~~l~C~~~g~----p~~--~i~W~~~g-~---~----i~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~-~v  282 (642)
T 1e07_A          218 GENLNLSCHAASN----PPA--QYSWFVNG-T---F----QQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT-TI  282 (642)
T ss_pred             CCEEEEEEEcCCC----CCc--EEEEEECC-e---E----cccCCceEEecccccCCeEEEEEEEeCCCceEEeeeE-EE
Confidence            6778888887211    222  23333222 0   0    0234568899999999999999999998765433221 22


Q ss_pred             EeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeE
Q psy7040         418 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       418 ~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y  497 (716)
                      .....+.+|.+..  .....+..|+.+.|.|.+.+.| +.+.|++++..+....++.+...  ...|.|.++...|.|.|
T Consensus       283 ~v~~~~~~p~i~~--~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y  357 (642)
T 1e07_A          283 TVYAEPPKPFITS--NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSND--NRTLTLLSVTRNDVGPY  357 (642)
T ss_pred             EEEccCCCCEEEc--CCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCC--CCEEEEeccCcccCeeE
Confidence            2223333444432  2334566788899999999887 69999999998876666665443  45899999999999999


Q ss_pred             EEEEEcCCCce-eeEEEEEEEE----EEEEEeC-CCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeE
Q psy7040         498 TLAVKNSWGTD-KGTAKVTVLG----CSLKWNP-PEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTK  571 (716)
Q Consensus       498 ~~~a~n~~g~~-~~s~~~~v~~----v~l~W~~-p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  571 (716)
                      +|.|.|..|.. +....+.+..    ..+.-.. ....+......|.+.    +.+.+.+.|++.+......      ..
T Consensus       358 ~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~----g~p~~~i~W~~~g~~~~~~------~~  427 (642)
T 1e07_A          358 ECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA----SNPPAQYSWLIDGNIQQHT------QE  427 (642)
T ss_pred             EEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcC----ccCCCeEEEEECCEEcCCC------ce
Confidence            99999999864 3345555440    1110000 001122222333332    3344559999988655433      78


Q ss_pred             EEEcCCCCCCeEEEEEEEEcCCCCCccceeee--ccCCCCCCccceee------ccceeEEEEEEeeEEEEeeeeccCce
Q psy7040         572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV--VTDKPSAPEGPIQW------LLTLTDVTWEISNYLQELHSSLMPIS  643 (716)
Q Consensus       572 ~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~--v~~~p~~~~~~~~~------~~~~v~l~w~i~~y~v~~~~~~~~~~  643 (716)
                      +.|.++...+.+.|+|.|.|..|....+..+.  +..++..|. +...      .+..+.              |.|.+.
T Consensus       428 L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~-i~~~~~~~v~~g~~v~--------------l~C~~~  492 (642)
T 1e07_A          428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPS-ISSNNSKPVEDKDAVA--------------FTCEPE  492 (642)
T ss_pred             EEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCce-EecCCceeecCCCeEE--------------EEEECC
Confidence            99999999999999999999998776664444  444444443 3221      233333              445544


Q ss_pred             e---eEEEEeCCeEeeecc----cceeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEEEecCCC
Q psy7040         644 L---ESQYLMNDKRVTIDN----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPS  703 (716)
Q Consensus       644 ~---~~~W~~~~~~~~~~~----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~v~~~p~  703 (716)
                      +   .+.|+++|..+....    ......|.|.++...|+|.|+|.|.|..|... .+..|.|..+|.
T Consensus       493 ~~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~  560 (642)
T 1e07_A          493 AQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD  560 (642)
T ss_pred             CCCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCC
Confidence            4   899999999886541    12236899999999999999999999999864 468899987654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.96  E-value=2.9e-26  Score=245.62  Aligned_cols=462  Identities=15%  Similarity=0.184  Sum_probs=291.9

Q ss_pred             CeEEecCCCCCcEEEEEEEEEecCccCCCccccceEEe-cCCCCc---------ccccccccceecccCCC--------C
Q psy7040         110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIA-RDPYSK---------YTSVSSLDSHKRSNQPC--------G  171 (716)
Q Consensus       110 ~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~-~~p~~~---------~~~~~~~~~~~~~~~p~--------G  171 (716)
                      ..|.|.++...+.+.|+|.|.|..|....+.. ..+.. ..|+..         .......+.|.+.+.|+        |
T Consensus        61 ~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~-l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g  139 (570)
T 3b43_A           61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAV-LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDG  139 (570)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEE-EEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETT
T ss_pred             EEEEEccCChhhCEEEEEEEEeCCceEEEEEE-EEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECC
Confidence            57999999999999999999999885433221 11111 011111         11223346688887766        3


Q ss_pred             ----CCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCC---CCeEEeEEeCCeEEEEE
Q psy7040         172 ----SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPG---GPLKVSNVHAEGVTLDW  244 (716)
Q Consensus       172 ----~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~---~~~~~~~~~~~~~~l~W  244 (716)
                          ...++..........|.|.++...|+|.|+|.|.|..|.....+.+.+.....+|.   .|..+....+..+.|.|
T Consensus       140 ~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C  219 (570)
T 3b43_A          140 ELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKC  219 (570)
T ss_dssp             EECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEE
T ss_pred             EECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEE
Confidence                23344444455668899999999999999999999999988888888876544442   11122334578899999


Q ss_pred             ECCCCCCCCccceEEEEEEe---CCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCC
Q psy7040         245 KVPDDDGGQPIEKYVVDKMD---EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNP  321 (716)
Q Consensus       245 ~~p~~~~~~~~~~y~v~~~~---~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~  321 (716)
                      .....    +...+.+....   ..........  ......+.|.++...+.+.|+|.|.|..|....+.   .+.+.  
T Consensus       220 ~~~g~----p~p~i~W~k~g~~i~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~---~l~V~--  288 (570)
T 3b43_A          220 HVTGT----APIKITWAKDNREIRPGGNYKMTL--VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA---QLGVQ--  288 (570)
T ss_dssp             EEESS----SCCEEEEEETTEECCTTSSEEEEE--ETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEE---EECCB--
T ss_pred             EEEEC----CCCEEEEEECCEECcCCCcEEEEE--ECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEE---EEEee--
Confidence            86322    22223322210   0111111111  12346899999999999999999999887542111   12221  


Q ss_pred             CCCCC---CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC-----CCceEEEeeecCCCCeEEecCCCCCC
Q psy7040         322 FNQPG---KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-----SPIWEKCAQTEGDTPKGKVLDLIEGN  393 (716)
Q Consensus       322 ~~~p~---~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~~~  393 (716)
                       .+|.   .+.... ....+..+.|.|.....    +..  .+.|...+     +.....  ........+.|.++...+
T Consensus       289 -~~p~~~~~~~~~~-~v~~g~~~~l~C~~~g~----P~p--~v~W~k~~~~l~~~~~~~~--~~~~~~~~L~i~~v~~~D  358 (570)
T 3b43_A          289 -EPPRFIKKLEPSR-IVKQDEHTRYECKIGGS----PEI--KVLWYKDETEIQESSKFRM--SFVESVAVLEMYNLSVED  358 (570)
T ss_dssp             -CCCEEEECCCSBC-CEESSCEEEEEEEEESS----SSC--EEEEEETTEECCCSSSEEE--EEETTEEEEEEESCCGGG
T ss_pred             -cCCcccccCCCcc-EEcCCCcEEEEEEEeeC----CCC--EEEEeECCEECCCCCcEEE--EEECCEEEEEECCCCccc
Confidence             1111   011101 11234556666665211    111  12222221     111111  111233568899999999


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcE
Q psy7040         394 QYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF  473 (716)
Q Consensus       394 ~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~  473 (716)
                      .+.|+|.|.|..|....+.      ......+|.+. ..+..+.+..|..+.|.|.+.+.|.+.+.|++++..+..+.++
T Consensus       359 ~G~Y~C~a~N~~g~~~~~~------~l~V~~~P~~~-~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~  431 (570)
T 3b43_A          359 SGDYTCEAHNAAGSASSST------SLKVKEPPVFR-KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY  431 (570)
T ss_dssp             CEEEEEEEEBTTBCCEEEE------EECEECCCEEC-SCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSE
T ss_pred             CEEEEEEEEeCCCEEEEEE------EEEecCCCeee-cCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCE
Confidence            9999999999988643221      11122355544 2345677889999999999999999999999999999888888


Q ss_pred             EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE---EEEEEEeCC-CCCCCCceeeEEEEEEecCCCce
Q psy7040         474 KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL---GCSLKWNPP-EDDGGAPIEYYMVEKMETDTGKV  549 (716)
Q Consensus       474 ~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~---~v~l~W~~p-~~~~~~~i~~y~v~~~~~~~~~~  549 (716)
                      .+...+....|.|.++...|.|.|+|.|.|..|.......+.+.   .+....... ...+......|.+.    +.+.+
T Consensus       432 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~----g~p~~  507 (570)
T 3b43_A          432 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIE----GAEPI  507 (570)
T ss_dssp             EEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEE----SCSSC
T ss_pred             EEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEe----cCCCC
Confidence            88887777899999999999999999999999998887777766   111111110 01122222334333    33445


Q ss_pred             eeeEEEccceeee-e-----ccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeec
Q psy7040         550 LIKWIRTNDKRVT-I-----DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  604 (716)
Q Consensus       550 ~~~w~~~~~~~~~-~-----~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v  604 (716)
                      .+.|++.+..... .     ........+.|.++.+.+.+.|+|.|.|..|....+..+.|
T Consensus       508 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V  568 (570)
T 3b43_A          508 SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV  568 (570)
T ss_dssp             CCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECC
T ss_pred             EEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEE
Confidence            5999998633211 1     11223468999999999999999999999998877776654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.96  E-value=9.7e-27  Score=261.69  Aligned_cols=546  Identities=16%  Similarity=0.130  Sum_probs=330.9

Q ss_pred             CeEEecCCCCCc------EEEEEEEEEecCccCCCccccceEEecCCCCc-------ccccccccceecccCC-------
Q psy7040         110 PEMDVTGLTPGH------EYKFRVKALNKEGESEPLETFSSIIARDPYSK-------YTSVSSLDSHKRSNQP-------  169 (716)
Q Consensus       110 ~~~~i~~L~~~~------~y~~~v~a~~~~g~~~~s~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~~p-------  169 (716)
                      .++.|.++...+      .+.|+|.|.|..|..............+.+..       .......+.|.+...+       
T Consensus        94 g~l~i~~~~~~~~~~~~d~G~Y~C~a~n~~G~~~S~~~~v~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v  173 (816)
T 3dmk_A           94 GKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVV  173 (816)
T ss_dssp             TEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEEEEEEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEE
T ss_pred             CcEEEcCCChHHccccccceEEEEEEecCcceEEccceEEEEEEccccEEEEecceEecCceEEEEECCCccccccEEEE
Confidence            578899988776      89999999999996322222221111111111       1122223446543221       


Q ss_pred             ----CC---------CCceEEEEecCCccEEEEeccccCcc-eEEEEEEEeCCCCce----eEEEEEEecCCC--CCCCC
Q psy7040         170 ----CG---------SGMVRKVQHLDYNTKLGVRMAQRADA-GFYTVTAENINGKDS----VEVEVIVLDKPS--PPGGP  229 (716)
Q Consensus       170 ----~G---------~~~~~~~~~~~~~~~l~i~~l~~~~~-g~y~c~a~n~~g~~~----~~~~~~v~~~p~--~p~~~  229 (716)
                          .+         ..+|+.+.   .+++|.|.++++.|+ |.|+|.|.|..+...    ....+.+..+..  +|...
T Consensus       174 ~W~~~~~~~~~~~~~~~~r~~~~---~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~  250 (816)
T 3dmk_A          174 SWHTDEEENYFPGAEYDGKYLVL---PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVV  250 (816)
T ss_dssp             EEEETTSCEECBSSCBTTTEEEC---TTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCC
T ss_pred             EEEecCceEeccccCCCceEEEe---cCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccc
Confidence                11         13344443   356899999999999 999999998765422    223555554322  22210


Q ss_pred             -----eEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcc---ccCcccceEEEcCCCCCCeEEEEEEEE
Q psy7040         230 -----LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAG---ETEGPVTGLEVEGLIPNHKYKFRVRAV  301 (716)
Q Consensus       230 -----~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~---~~~~~~~~~~i~~L~p~~~y~~~v~a~  301 (716)
                           .......+..+.|.|...    |.|...+.+.....+........   ........+.|.++...+.+.|+|.|.
T Consensus       251 ~~~~~~~~~v~~g~~v~L~C~~~----g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~  326 (816)
T 3dmk_A          251 SLAKFDMKTYSGSSTMALLCPAQ----GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN  326 (816)
T ss_dssp             GGGGEEEEEECTTSCEEECCCCB----CSSCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEECSCCGGGCEEEEEEEE
T ss_pred             cccCccceEEeCCCeEEEEEEee----ecCCCeEEEEeCCCCCccCcceecCCceEeccceEEECCCCHhHCEEEEEEEE
Confidence                 123445688999999963    23334444433212111111110   001124689999999999999999999


Q ss_pred             cCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCC
Q psy7040         302 NKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT  381 (716)
Q Consensus       302 n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~  381 (716)
                      |..|.....   ..+.+..+......|.  ......+..+.|.|.....    +..  .+.|...+    .   ......
T Consensus       327 n~~g~~~~~---~~l~V~~~~~~~~~~~--~~~v~~G~~v~l~C~~~g~----p~~--~v~W~k~g----~---~~~~~~  388 (816)
T 3dmk_A          327 NSVGGESVE---TVLTVTAPLSAKIDPP--TQTVDFGRPAVFTCQYTGN----PIK--TVSWMKDG----K---AIGHSE  388 (816)
T ss_dssp             CSSCEEEEE---EEEEECEEEEEEEESS--EEECCTTSCEEEEEEEEEE----CCC--EEEEEETT----E---ECSCCS
T ss_pred             cCCCceEEE---EEEEEcCCCceeeCCC--ceEecCCCCEEEEEEEecc----CCC--EEEEEECC----E---ECCCCC
Confidence            987753211   1122221100001111  1222345567777765211    111  23333222    0   112345


Q ss_pred             CeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEE
Q psy7040         382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL  461 (716)
Q Consensus       382 ~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~  461 (716)
                      ..+.|.++...+.+.|+|.|.|..|....+   ..........+|.+. .......+..|..+.|.|.+.+.|.+.+.|+
T Consensus       389 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~---~~l~v~~~~~~p~i~-~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~  464 (816)
T 3dmk_A          389 SVLRIESVKKEDKGMYQCFVRNDRESAEAS---AELKLGGRFDPPVIR-QAFQEETMEPGPSVFLKCVAGGNPTPEISWE  464 (816)
T ss_dssp             SEEEESSCCGGGCEEEEEEEECSSCEEEEC---CEEECCCSSCCCEEE-EECCCEEECSSSCEEEEEEEECSSCCEEEEE
T ss_pred             CEEEEcCCCHHHCEEEEEEEECCCCcEEEE---EEEEEccccCCCceE-ecCcceEEcCCCCEEEEEEEecCCCCEEEEE
Confidence            679999999999999999999987754322   122222223455544 2344567889999999999999999999999


Q ss_pred             eCCeEeccCCcEEEEe----C-CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCC----CCCCC
Q psy7040         462 CNDITIISKDRFKIVN----D-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPE----DDGGA  532 (716)
Q Consensus       462 ~~~~~~~~~~~~~~~~----~-~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~----~~~~~  532 (716)
                      +++..+....++....    . .....|.|.++...|.|.|+|.|.|..|....+..+.+..... ...+.    ..+..
T Consensus       465 ~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~-~~~~~~~~v~~G~~  543 (816)
T 3dmk_A          465 LDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPY-IRQMEKKAIVAGET  543 (816)
T ss_dssp             ETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCE-ECCCCCEEEETTCC
T ss_pred             ECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCe-eEccCCeEEecCCe
Confidence            9999987776665422    1 2235699999999999999999999999888887777661100 00110    11122


Q ss_pred             ceeeEEEEEEecCCCceeeeEEEccceeeeec--cccceeEEEEcCCC-CCCeEEEEEEEEcCCCCCcc-ceeeeccCCC
Q psy7040         533 PIEYYMVEKMETDTGKVLIKWIRTNDKRVTID--NVDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQV-FIEVVVTDKP  608 (716)
Q Consensus       533 ~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~i~~L~-~~~~y~~~v~a~n~~G~~~~-s~~~~v~~~p  608 (716)
                      ....|.+.    ..+.+.+.|++.+.......  .......+.|.++. ..+.+.|+|.|.|..|.... ...+.+..+|
T Consensus       544 v~l~C~~~----g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p  619 (816)
T 3dmk_A          544 LIVTCPVA----GYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLP  619 (816)
T ss_dssp             EEEECCEE----CSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCC
T ss_pred             EEEEEEec----CCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCC
Confidence            22233332    23344599998876543211  11123678999998 68999999999999885432 2233344444


Q ss_pred             CCCc----cceeeccceeEEEEEEeeEEEEeeeeccCcee-----eEEEEeCCeEeeec-------ccceeeEEEEccCC
Q psy7040         609 SAPE----GPIQWLLTLTDVTWEISNYLQELHSSLMPISL-----ESQYLMNDKRVTID-------NVDYFTKITIRPLQ  672 (716)
Q Consensus       609 ~~~~----~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~-----~~~W~~~~~~~~~~-------~~~~~~~~~i~~l~  672 (716)
                      ....    ......+..+.              |.|.+.+     .+.|+++|+.+..+       .......|.|.++.
T Consensus       620 ~~~~~~~~~~~~~~G~~v~--------------L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~  685 (816)
T 3dmk_A          620 RIIPFAFEEGPAQVGQYLT--------------LHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVE  685 (816)
T ss_dssp             CCBCCCCCSSCEESSCEEE--------------EEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCC
T ss_pred             ccccccccccccCCCCeEE--------------EEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCC
Confidence            3211    01122233444              5666553     79999999887544       11234689999999


Q ss_pred             CCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy7040         673 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPS  703 (716)
Q Consensus       673 ~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~  703 (716)
                      .+|+|.|+|.|.|..|....+..|.|..+|.
T Consensus       686 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~  716 (816)
T 3dmk_A          686 ASHAGNFTCHARNLAGHQQFTTPLNVYVPPR  716 (816)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEECEEEEEE
T ss_pred             hhhCEEEEEEEEeCCccEEEEEEEEEEeCCc
Confidence            9999999999999999999999999988765

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.96  E-value=2.1e-26  Score=224.34  Aligned_cols=261  Identities=23%  Similarity=0.404  Sum_probs=200.6

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCC-CCcEEEecc-cCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE-TGVWIPVGK-TREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +.||.+|.+...+.+++.|+|++|.    +++.+|+|+|+..+ .+.|..... ...+++.|.+|.|++.|.|+|+|.|.
T Consensus        21 p~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   96 (290)
T 3r8q_A           21 IPAPTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKD   96 (290)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCS----SCCCEEEEEEEESSSSSCCEEEEECTTCCEEEECSCCSSCEEEEEEEEEET
T ss_pred             CCCCCceEEEECCCCEEEEEEeCCC----CCeeEEEEEEEeCCCCCceEEEEcCCCccEEEeCCCCCCCEEEEEEEEEeC
Confidence            3444557778999999999999973    35999999998765 345555443 33589999999999999999999999


Q ss_pred             CccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCce
Q psy7040         133 EGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDS  212 (716)
Q Consensus       133 ~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  212 (716)
                      .|.+.++.... .+                                                                  
T Consensus        97 ~g~s~~s~~~~-~t------------------------------------------------------------------  109 (290)
T 3r8q_A           97 TLTSRPAQGVV-TT------------------------------------------------------------------  109 (290)
T ss_dssp             TEECCCEEEEE-EC------------------------------------------------------------------
T ss_pred             CCCCCCcceeE-ec------------------------------------------------------------------
Confidence            99887653211 11                                                                  


Q ss_pred             eEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCC
Q psy7040         213 VEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNH  292 (716)
Q Consensus       213 ~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  292 (716)
                             ...|.+|.+ +.+.....+++.|+|++|.   + .+.+|.|++...+...+.... .......+.|.+|.|++
T Consensus       110 -------~~~~~~P~~-l~~~~~~~~sv~l~W~~p~---~-~~~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t  176 (290)
T 3r8q_A          110 -------LENVSPPRR-ARVTDATETTITISWRTKT---E-TITGFQVDAVPANGQTPIQRT-IKPDVRSYTITGLQPGT  176 (290)
T ss_dssp             -------CCCCCCCEE-EEEEEECSSCEEEEEECCS---C-CCCEEEEEEEESSSCCCEEEE-ECTTCSEEEECSCCTTC
T ss_pred             -------CCCCCCCce-eEEEEcCCCeEEEEEeCCC---C-cccEEEEEEEECCCCcceEEe-cCCCccEEEECCCCCCC
Confidence                   112455666 7888889999999999863   2 589999999876654433222 22457889999999999


Q ss_pred             eEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceE
Q psy7040         293 KYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE  372 (716)
Q Consensus       293 ~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~  372 (716)
                      .|.|+|.|.|..|.+.+..    +...   ..|.+|.++.+...+.+++.|+|.+|..    .+.+|.|+++..+...+.
T Consensus       177 ~Y~~~V~A~n~~g~s~~~~----~~~~---t~p~~P~~l~~~~~~~~sv~l~W~~p~~----~~~~Y~v~~~~~~~~~~~  245 (290)
T 3r8q_A          177 DYKIYLYTLNDNARSSPVV----IDAS---TAIDAPSNLRFLATTPNSLLVSWQPPRA----RITGYIIKYEKPGSPPRE  245 (290)
T ss_dssp             EEEEEEEEEETTEECCCEE----EEEE---CCCCCCEEEEEEEEETTEEEEEEECCSS----CCCEEEEEEECTTSCCEE
T ss_pred             EEEEEEEEEeCCcccCCEE----EEec---CCCCCCCccEEEeeCCCEEEEEEeCCCC----cccEEEEEEEeCCCCcce
Confidence            9999999999988765532    2222   3477888999999999999999999652    689999999987766555


Q ss_pred             EEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCC
Q psy7040         373 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  410 (716)
Q Consensus       373 ~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~  410 (716)
                      ..........++.+.+|.+++.|.|+|+|.|..|.|.+
T Consensus       246 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p  283 (290)
T 3r8q_A          246 VVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP  283 (290)
T ss_dssp             CSSCCCTTCCEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred             eEeccCCCccEEEECCCCCCCEEEEEEEEEeCCCcCCc
Confidence            44344567889999999999999999999999998754

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.95  E-value=7e-26  Score=231.47  Aligned_cols=325  Identities=19%  Similarity=0.201  Sum_probs=225.6

Q ss_pred             CceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCC
Q psy7040         173 GMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGG  252 (716)
Q Consensus       173 ~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~  252 (716)
                      ..++.+........|.|.+++..|+|.|+|.|.|..|..+..+.|.|..+|.....+.......+..+.|.|....    
T Consensus        51 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g----  126 (389)
T 2jll_A           51 DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKS----  126 (389)
T ss_dssp             SSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEE----
T ss_pred             CCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEe----
Confidence            3566666656778999999999999999999999999999999999998876544432334456788999997522    


Q ss_pred             CccceEEEEEE--eCCCCC--eEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCC
Q psy7040         253 QPIEKYVVDKM--DEATGR--WTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP  328 (716)
Q Consensus       253 ~~~~~y~v~~~--~~~~~~--~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p  328 (716)
                      .+...+.+...  ......  ..... ..+....+.|.++...+.|.|+|.|.|..|.....   ..+..   ...|.+|
T Consensus       127 ~p~~~i~W~~~g~~l~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~---~~l~v---~~~P~~P  199 (389)
T 2jll_A          127 NPPASIHWRRDKLVLPAKNTTNLKTY-STGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQE---YILAL---ADVPSSP  199 (389)
T ss_dssp             ESCCEEEEEETTEESSCTTCTTEEEE-ECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEE---EEEEE---CCCCCCC
T ss_pred             cCCCeEEEEECCccCCcccCceEEEe-ccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEE---EEEEe---cCCCCCC
Confidence            12222222221  000000  01111 11335679999999999999999999998874322   11222   2567788


Q ss_pred             CCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040         329 GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  408 (716)
Q Consensus       329 ~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~  408 (716)
                      .++.+.......+.|+|.+|..+++.++.+|.|+|+..+...|.... .......+.|.+|.+++.|.|+|.|.|..|.+
T Consensus       200 ~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~  278 (389)
T 2jll_A          200 YGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR-SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG  278 (389)
T ss_dssp             EEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEE-CSTTCSEEEECSCCTTCEEEEEEEEEESSCBC
T ss_pred             cceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEee-ccCCcceEEECCccCCCEEEEEEEEEcCCccC
Confidence            88888888889999999988777777899999999988877776543 33456789999999999999999999999998


Q ss_pred             CCCCCCCceEeec-CCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEEC
Q psy7040         409 EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF  487 (716)
Q Consensus       409 ~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~  487 (716)
                      .++......+... ++.+|.+                  ..                                   ..  
T Consensus       279 ~~s~~~~~~t~~~~~p~~p~~------------------~~-----------------------------------~~--  303 (389)
T 2jll_A          279 DYSKIEIFQTLPVREPSPPSI------------------HG-----------------------------------QP--  303 (389)
T ss_dssp             CCCCCEEEECCCCCCCCCCCE------------------EE-----------------------------------EE--
T ss_pred             CCCcceEEEecCCCCCCCCcc------------------cc-----------------------------------cc--
Confidence            8776543332221 1111110                  00                                   00  


Q ss_pred             CCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecccc
Q psy7040         488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVD  567 (716)
Q Consensus       488 ~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~  567 (716)
                       ....                         ++.|+|.+|.+ +++++.+|.|+++....    ..|.......      .
T Consensus       304 -~~~~-------------------------~v~l~W~~p~~-~~~~i~~Y~v~~~~~~~----~~~~~~~~~~------~  346 (389)
T 2jll_A          304 -SSGK-------------------------SFKLSITKQDD-GGAPILEYIVKYRSKDK----EDQWLEKKVQ------G  346 (389)
T ss_dssp             -ETTT-------------------------EEEEEECCCCC-CSSCCCEEEEEEEC---------CCBCCEEC------T
T ss_pred             -CcCC-------------------------EEEEEEECCCC-CCCcccEEEEEEEeCCC----CcceeEeecc------C
Confidence             0001                         89999998754 55679999999998655    4554322111      1


Q ss_pred             ceeEEEEcCCCCCCeEEEEEEEEcCCCCCcccee
Q psy7040         568 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE  601 (716)
Q Consensus       568 ~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~  601 (716)
                      ....+.|.+|.+++.|.|+|+|.|..|.|.++..
T Consensus       347 ~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~  380 (389)
T 2jll_A          347 NKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY  380 (389)
T ss_dssp             TCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEE
T ss_pred             CcceEEeCCcCCCCEEEEEEEEEcCCcCCCceee
Confidence            2378999999999999999999999999988865

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.95  E-value=3.1e-25  Score=215.40  Aligned_cols=261  Identities=18%  Similarity=0.248  Sum_probs=198.7

Q ss_pred             ccCCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCC-CCcEEEec-ccCCCeEEecCCCCCcEEEEEEEE
Q psy7040          52 DRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE-TGVWIPVG-KTREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        52 ~~~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      ..++.||..|.+..++.+++.|+|++|.    .++.+|+|+|+... .+.|.... ....+++.|.+|.|++.|.|+|+|
T Consensus        12 ~~~p~~P~~l~~~~~~~~sv~l~W~~~~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   87 (283)
T 1tdq_A           12 IPVIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISA   87 (283)
T ss_dssp             CCSSCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEE
T ss_pred             ccCCCCCcEEEEEecCCCeEEEEEECCC----CceeEEEEEEEEecCCCCcEEEEeCCCCCEEEecCCCCCCEEEEEEEE
Confidence            3455667778888999999999999985    35999999996543 33343322 334589999999999999999999


Q ss_pred             EecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCC
Q psy7040         130 LNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENING  209 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  209 (716)
                      .|..|.+.+..                                                                     
T Consensus        88 ~~~~g~s~~~~---------------------------------------------------------------------   98 (283)
T 1tdq_A           88 VRGTNESDASS---------------------------------------------------------------------   98 (283)
T ss_dssp             EETTEECCCEE---------------------------------------------------------------------
T ss_pred             ECCCCCCCCee---------------------------------------------------------------------
Confidence            99887664221                                                                     


Q ss_pred             CceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcc---cceEEEc
Q psy7040         210 KDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP---VTGLEVE  286 (716)
Q Consensus       210 ~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~---~~~~~i~  286 (716)
                             +.+..+|.+|.+ +.+.....+++.|+|++|.    ..+.+|.|++...+...|...... ..   ...+.+.
T Consensus        99 -------~~~~t~p~~P~~-l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~  165 (283)
T 1tdq_A           99 -------TQFTTEIDAPKN-LRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVP-KGIGPTTKTTLT  165 (283)
T ss_dssp             -------EEEECCCCCCEE-EEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTCCCCEEEEEE-CCSSSEEEEEEC
T ss_pred             -------EEEECCCCCCCc-eEEEecCCCeEEEEecCCC----CCccEEEEEEEeCCCCcceEEECC-CCCcccceEEEe
Confidence                   012236777777 8888889999999999865    258999999988766555333221 23   6889999


Q ss_pred             CCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeec
Q psy7040         287 GLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK  366 (716)
Q Consensus       287 ~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~  366 (716)
                      +|.|++.|.|+|.|.|..|.+.+..    +...   ..|.+|.++.+...+.+++.|+|.+|.    +.+.+|.|+++..
T Consensus       166 ~L~p~t~Y~~~V~A~n~~g~s~~~~----~~~~---t~~~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~  234 (283)
T 1tdq_A          166 DLVPGTEYGVGISAVMNSKQSIPAT----MNAR---TELDSPRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPS  234 (283)
T ss_dssp             SCCTTCEEEEEEEEEETTEECCCEE----EEEE---CCCCCCEEEEEEEECSSCEEEEEECCC----SCCSEEEEEEECS
T ss_pred             cCCCCCEEEEEEEEEeCCCCCcceE----EEec---CCCCCCCccEEeEecCCEEEEEEeCCC----CcccEEEEEEEcC
Confidence            9999999999999999888664432    2222   345578899999989999999999853    3689999999887


Q ss_pred             CCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCC
Q psy7040         367 YSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  411 (716)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s  411 (716)
                      ++. +. .........++.|.+|.+++.|.|+|+|.|..|.+.++
T Consensus       235 ~~~-~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~  277 (283)
T 1tdq_A          235 SGI-SS-EVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES  277 (283)
T ss_dssp             SSC-CE-EEEEESSCSEEEECCCCTTCCEEEEEEEEETTEECCCE
T ss_pred             CCC-ee-EEEeCCCccEEEECCCCCCCEEEEEEEEEcCCCCCcce
Confidence            643 22 23345677899999999999999999999999887654

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.94  E-value=3.5e-26  Score=233.72  Aligned_cols=370  Identities=15%  Similarity=0.138  Sum_probs=175.1

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEE---ecccCCCeE--EecCCCCCcEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIP---VGKTREPEM--DVTGLTPGHEYKFRVK  128 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~---~~~~~~~~~--~i~~L~~~~~y~~~v~  128 (716)
                      .++||.++++.... .++.|+|++|... +.++. |.|+|+..+.+.|..   |.....+.+  +..+|.+++.|.|||+
T Consensus         7 ~l~~P~nv~~~~~~-~~~~L~W~p~~~~-~~~i~-Y~V~y~~~~~~~W~~~~~c~~~~~~~~~~t~~~l~~~~~Y~~rV~   83 (414)
T 3se4_A            7 NLKSPQKVEVDIID-DNFILRWNRSDES-VGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIR   83 (414)
T ss_dssp             ----CCCCCEEEET-TEEEEC-----------CE-EEEEEEESSCCCCEEEEEEEEESCSCEECCSSCCCTTSCEEEEEE
T ss_pred             CCCCCceeEEEEEC-CceEEEEcCCCCC-CCCeE-EEEEEEECCCCCcEECcCccCCCCCEEECCcccccCCCcEEEEEE
Confidence            35778889888874 5689999998753 34577 999999877778864   333333444  4456899999999999


Q ss_pred             EEecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCC
Q psy7040         129 ALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENIN  208 (716)
Q Consensus       129 a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  208 (716)
                      |.| .+.|.++.........                                                            
T Consensus        84 A~n-~~~S~~s~~~~~~~~~------------------------------------------------------------  102 (414)
T 3se4_A           84 AEK-ENTSSWYEVDSFTPFR------------------------------------------------------------  102 (414)
T ss_dssp             EEE-TTEEEEEECCCBCHHH------------------------------------------------------------
T ss_pred             Eee-CCcCCCEecCceeecc------------------------------------------------------------
Confidence            999 5555443221110000                                                            


Q ss_pred             CCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCC------CccceEEEEEEeCCCCCeEEccccCcccce
Q psy7040         209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGG------QPIEKYVVDKMDEATGRWTPAGETEGPVTG  282 (716)
Q Consensus       209 g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~------~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~  282 (716)
                                 ...+.+|.  +.+.. ..+++.|+|. |...++      ..+..|.|.+...+........   .....
T Consensus       103 -----------~~~~~pP~--v~~~~-~~~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~y~~~~~~~~~~~~---~~~~~  164 (414)
T 3se4_A          103 -----------KAQIGPPE--VHLEA-EDKAIVIHIS-PGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIE---NIYSR  164 (414)
T ss_dssp             -----------HCCCCCCE--EEEEE-CSSCEEEEEE-CSSSSCTTTGGGGSSCEEEEEEEETTTCCEEEEE---EECSE
T ss_pred             -----------cceeCCCe--EEEEE-cCCEEEEEEE-cCCCCCceeeeecCcEEEEEEEEECCCCceEEEe---cCCcE
Confidence                       01233443  55543 3568999999 654433      2467999999877665543322   34678


Q ss_pred             EEEcCCCCCCeEEEEEEEEcC--CCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEE
Q psy7040         283 LEVEGLIPNHKYKFRVRAVNK--QGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYI  360 (716)
Q Consensus       283 ~~i~~L~p~~~y~~~v~a~n~--~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~  360 (716)
                      +.|.+|.|++.|.|+|+|.|.  .|.+..+......+.  ...++.+|.++.+... +.++.|+|.+|.     ...+|.
T Consensus       165 ~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~--~~~~~~~P~~v~~~~~-~~~~~l~W~pp~-----~~~~Y~  236 (414)
T 3se4_A          165 HKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTT--VENELPPPENIEVSVQ-NQNYVLKWDYTY-----ANMTFQ  236 (414)
T ss_dssp             EEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECC--SCCSSCCCEEEEEEEE-TTEEEEEEECSS-----SSCEEE
T ss_pred             EEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccc--cccccCCCCccEEEEe-cCCeEEEECCCC-----CCeEEE
Confidence            999999999999999999994  566666654322221  1233457888888765 467999999963     234999


Q ss_pred             EEEeec--------CCCceEEEee-ecCCCCeEEec-CCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeec-CCCCCccc
Q psy7040         361 IEKKEK--------YSPIWEKCAQ-TEGDTPKGKVL-DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA-KKVSPYIN  429 (716)
Q Consensus       361 v~~~~~--------~~~~~~~~~~-~~~~~~~~~i~-~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~-~~~~P~~~  429 (716)
                      |+|+..        +...|..... .......+.+. +|.+++.|.|+|+|.|..|.|.++....+.+... .+.+|.  
T Consensus       237 v~y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~t~~~~~~~pP~--  314 (414)
T 3se4_A          237 VQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV--  314 (414)
T ss_dssp             EEEEESGGGSCCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEETTCC---------
T ss_pred             EEEEehhccccccccccCceECCCccCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccccccchhccccCCCe--
Confidence            999863        2345654321 12345667776 6999999999999999999887775432222211 111111  


Q ss_pred             ccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040         430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       430 ~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~  509 (716)
                                                                            +.+... .+                 
T Consensus       315 ------------------------------------------------------l~~~~~-~~-----------------  322 (414)
T 3se4_A          315 ------------------------------------------------------FNIRSL-SD-----------------  322 (414)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------------------------EEEEEC-CC-----------------
Confidence                                                                  000000 00                 


Q ss_pred             eEEEEEEEEEEEEEeCCCCCCC-----CceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEE
Q psy7040         510 GTAKVTVLGCSLKWNPPEDDGG-----APIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQ  584 (716)
Q Consensus       510 ~s~~~~v~~v~l~W~~p~~~~~-----~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~  584 (716)
                              ++.|.|.+|...++     +.+.+|.|.|...+..   ..+. ..         .....+.|.+|++++.|.
T Consensus       323 --------si~v~W~~P~~~~~~~~~~~~~~~Y~v~y~~~~~~---~~~~-~~---------~~~~~~~l~~L~p~t~Y~  381 (414)
T 3se4_A          323 --------SFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSN---AERK-II---------EKKTDVTVPNLKPLTVYC  381 (414)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------eEEEEEECCCCccccchhhcCCeEEEEEEEECCCC---ceEE-EE---------ecCCeEEeCCCCCCCeEE
Confidence                    78899998876543     2478899887765431   1111 10         123789999999999999


Q ss_pred             EEEEEEcC----CCCCccceeeeccCCC
Q psy7040         585 YTVTATNS----QGKDQVFIEVVVTDKP  608 (716)
Q Consensus       585 ~~v~a~n~----~G~~~~s~~~~v~~~p  608 (716)
                      |+|+|.+.    .|.|..|..+.+...+
T Consensus       382 ~~V~A~~~~~~~~g~g~~S~~~~~~T~~  409 (414)
T 3se4_A          382 VKARAHTMDEKLNKSSVFSDAVCEKTKP  409 (414)
T ss_dssp             ----------------------------
T ss_pred             EEEEEEecccccCCCCCCCCCEeEEeCC
Confidence            99999993    5888888766554443

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.93  E-value=8.8e-24  Score=205.11  Aligned_cols=269  Identities=17%  Similarity=0.218  Sum_probs=188.9

Q ss_pred             EEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCC-CCCeEEccccCcccceEEEcCCCCCCe
Q psy7040         215 VEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA-TGRWTPAGETEGPVTGLEVEGLIPNHK  293 (716)
Q Consensus       215 ~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~L~p~~~  293 (716)
                      ..+.+..+|.+|.+ +.+.....+++.|+|++|.    .++.+|.|+++... ...|.... .......+.|.+|.|++.
T Consensus         7 ~~~~~~~~p~~P~~-l~~~~~~~~sv~l~W~~~~----~~~~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~   80 (283)
T 1tdq_A            7 GGGGGIPVIDGPTQ-ILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFR-LQPPLSQYSVQALRPGSR   80 (283)
T ss_dssp             -----CCSSCCCEE-EEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEE-ECTTCSEEEECSCCTTCE
T ss_pred             cccccccCCCCCcE-EEEEecCCCeEEEEEECCC----CceeEEEEEEEEecCCCCcEEEE-eCCCCCEEEecCCCCCCE
Confidence            34455678889988 8999999999999999875    25899999986543 33343222 235678999999999999


Q ss_pred             EEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEE
Q psy7040         294 YKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK  373 (716)
Q Consensus       294 y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~  373 (716)
                      |.|+|+|.|..|.+.+..    ....   ..|.+|.++.+...+.+++.|+|.+|.    +.+.+|.|+++..+...+..
T Consensus        81 Y~~~V~a~~~~g~s~~~~----~~~~---t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~  149 (283)
T 1tdq_A           81 YEVSISAVRGTNESDASS----TQFT---TEIDAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHE  149 (283)
T ss_dssp             EEEEEEEEETTEECCCEE----EEEE---CCCCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTCCCCEE
T ss_pred             EEEEEEEECCCCCCCCee----EEEE---CCCCCCCceEEEecCCCeEEEEecCCC----CCccEEEEEEEeCCCCcceE
Confidence            999999999887764322    2222   357788999999999999999999965    26899999999876555533


Q ss_pred             EeeecCC---CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEE
Q psy7040         374 CAQTEGD---TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV  450 (716)
Q Consensus       374 ~~~~~~~---~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v  450 (716)
                      .. ....   ..++.+.+|.+++.|.|+|+|.|..|.+.+..    ......+.+|.                       
T Consensus       150 ~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~----~~~~t~~~~P~-----------------------  201 (283)
T 1tdq_A          150 VL-VPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPAT----MNARTELDSPR-----------------------  201 (283)
T ss_dssp             EE-EECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCEE----EEEECCCCCCE-----------------------
T ss_pred             EE-CCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcceE----EEecCCCCCCC-----------------------
Confidence            22 3334   77899999999999999999999887653321    11111111111                       


Q ss_pred             eccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCC
Q psy7040         451 IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDG  530 (716)
Q Consensus       451 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~  530 (716)
                                                      .+.+......                         ++.|+|++|.   
T Consensus       202 --------------------------------~l~~~~~~~~-------------------------sv~l~W~~p~---  221 (283)
T 1tdq_A          202 --------------------------------DLMVTASSET-------------------------SISLIWTKAS---  221 (283)
T ss_dssp             --------------------------------EEEEEEECSS-------------------------CEEEEEECCC---
T ss_pred             --------------------------------ccEEeEecCC-------------------------EEEEEEeCCC---
Confidence                                            0111111111                         8999999873   


Q ss_pred             CCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCcccee
Q psy7040         531 GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE  601 (716)
Q Consensus       531 ~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~  601 (716)
                       +.+.+|.|++..... .  .......         .....+.|.+|.+++.|.|+|+|.|..|.|.++..
T Consensus       222 -~~i~~Y~v~~~~~~~-~--~~~~~~~---------~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~  279 (283)
T 1tdq_A          222 -GPIDHYRITFTPSSG-I--SSEVTVP---------RDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV  279 (283)
T ss_dssp             -SCCSEEEEEEECSSS-C--CEEEEEE---------SSCSEEEECCCCTTCCEEEEEEEEETTEECCCEEE
T ss_pred             -CcccEEEEEEEcCCC-C--eeEEEeC---------CCccEEEECCCCCCCEEEEEEEEEcCCCCCcceee
Confidence             348999999987654 1  1111111         11388999999999999999999999998877654

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.93  E-value=9.2e-24  Score=205.57  Aligned_cols=266  Identities=17%  Similarity=0.262  Sum_probs=190.7

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCC-CCCeEEccccCcccceEEEcCCCCCCeEEEEEE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA-TGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVR  299 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~  299 (716)
                      .+|.+|.+ +.+.....+++.|+|++|.   + .+.+|.|+++... ...|..... ......+.|.+|.|++.|.|+|+
T Consensus        19 ~~p~~P~~-l~~~~~~~~sv~l~W~~p~---~-~~~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~   92 (290)
T 3r8q_A           19 PAIPAPTD-LKFTQVTPTSLSAQWTPPN---V-QLTGYRVRVTPKEKTGPMKEINL-APDSSSVVVSGLMVATKYEVSVY   92 (290)
T ss_dssp             -CCCCCEE-EEEEEECSSCEEEEEECCS---S-CCCEEEEEEEESSSSSCCEEEEE-CTTCCEEEECSCCSSCEEEEEEE
T ss_pred             CCCCCCCc-eEEEECCCCEEEEEEeCCC---C-CeeEEEEEEEeCCCCCceEEEEc-CCCccEEEeCCCCCCCEEEEEEE
Confidence            45677777 8888999999999999862   2 5899999998765 344544432 34578999999999999999999


Q ss_pred             EEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecC
Q psy7040         300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG  379 (716)
Q Consensus       300 a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~  379 (716)
                      |.|..|.+.++...  +.  +. ..|.+|.++.+...+.+++.|+|.+|.    +.+.+|.|+++..+...+.. .....
T Consensus        93 a~~~~g~s~~s~~~--~~--t~-~~~~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~-~~~~~  162 (290)
T 3r8q_A           93 ALKDTLTSRPAQGV--VT--TL-ENVSPPRRARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQ-RTIKP  162 (290)
T ss_dssp             EEETTEECCCEEEE--EE--CC-CCCCCCEEEEEEEECSSCEEEEEECCS----CCCCEEEEEEEESSSCCCEE-EEECT
T ss_pred             EEeCCCCCCCccee--Ee--cC-CCCCCCceeEEEEcCCCeEEEEEeCCC----CcccEEEEEEEECCCCcceE-EecCC
Confidence            99999887765321  22  21 235688899999999999999999962    36899999998776443322 33456


Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEE
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE  459 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~  459 (716)
                      ...++.|.+|.+++.|.|+|+|.|..|.+.+..    ......+.+|.                 .+.+           
T Consensus       163 ~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~----~~~~t~p~~P~-----------------~l~~-----------  210 (290)
T 3r8q_A          163 DVRSYTITGLQPGTDYKIYLYTLNDNARSSPVV----IDASTAIDAPS-----------------NLRF-----------  210 (290)
T ss_dssp             TCSEEEECSCCTTCEEEEEEEEEETTEECCCEE----EEEECCCCCCE-----------------EEEE-----------
T ss_pred             CccEEEECCCCCCCEEEEEEEEEeCCcccCCEE----EEecCCCCCCC-----------------ccEE-----------
Confidence            788999999999999999999999988764321    11111111111                 0110           


Q ss_pred             EEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCceeeEEE
Q psy7040         460 WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMV  539 (716)
Q Consensus       460 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v  539 (716)
                                                 .             ..+..            ++.|+|.+|.    +.+.+|.|
T Consensus       211 ---------------------------~-------------~~~~~------------sv~l~W~~p~----~~~~~Y~v  234 (290)
T 3r8q_A          211 ---------------------------L-------------ATTPN------------SLLVSWQPPR----ARITGYII  234 (290)
T ss_dssp             ---------------------------E-------------EEETT------------EEEEEEECCS----SCCCEEEE
T ss_pred             ---------------------------E-------------eeCCC------------EEEEEEeCCC----CcccEEEE
Confidence                                       0             00001            8999999986    24899999


Q ss_pred             EEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccce
Q psy7040         540 EKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI  600 (716)
Q Consensus       540 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~  600 (716)
                      ++.....    ..|......      ......+.+.+|.+++.|.|+|+|.|..|.|.+..
T Consensus       235 ~~~~~~~----~~~~~~~~~------~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~  285 (290)
T 3r8q_A          235 KYEKPGS----PPREVVPRP------RPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLI  285 (290)
T ss_dssp             EEECTTS----CCEECSSCC------CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             EEEeCCC----CcceeEecc------CCCccEEEECCCCCCCEEEEEEEEEeCCCcCCccc
Confidence            9998765    334322111      11238999999999999999999999999887643

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.93  E-value=1.2e-24  Score=212.07  Aligned_cols=255  Identities=16%  Similarity=0.173  Sum_probs=183.1

Q ss_pred             CCeEEEEecCCC-CCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCCccccceEE
Q psy7040          68 KDGCTLKWNKPK-DDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSII  146 (716)
Q Consensus        68 ~~s~~l~W~~p~-~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~  146 (716)
                      .+++.|+|+++. .+.++++.+|.|+++..+.... ...   .....+.+|.+++.|.|+|+|.|..|.+.++...   .
T Consensus        22 ~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~~-~~~---~~~~~~~~l~p~t~Y~~~V~A~n~~G~s~~s~~~---~   94 (290)
T 3l5i_A           22 YRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ-NYT---VNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLT---I   94 (290)
T ss_dssp             CEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCCE-EEE---ESSSEEEEEECSSCEEEEEEEEESSCBCCCEEEE---E
T ss_pred             CceEEEEEccCCchhcCCceEeEEEEEEeCCcCce-eEe---cCCcEEEEEcCCceEEEEEEEEcCCCCCCCceEE---e
Confidence            479999999843 2345669999999987665432 111   1345678899999999999999999987655211   1


Q ss_pred             ecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCC
Q psy7040         147 ARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP  226 (716)
Q Consensus       147 ~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p  226 (716)
                      ....                                                                     ..+|.++
T Consensus        95 ~~~~---------------------------------------------------------------------~~~~~p~  105 (290)
T 3l5i_A           95 PACD---------------------------------------------------------------------FQATHPV  105 (290)
T ss_dssp             CCTT---------------------------------------------------------------------CCCCCCC
T ss_pred             eccc---------------------------------------------------------------------ccCCCcc
Confidence            1000                                                                     0123344


Q ss_pred             CCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCC-----CeEEccccCcccceEEEcCCCCCCeEEEEEEEE
Q psy7040         227 GGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG-----RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV  301 (716)
Q Consensus       227 ~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~-----~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~  301 (716)
                      .+ +.+... .+++.|+|++|..    ++.+|.|+++.....     .|.....  .....+.+.+|.|++.|.|+|.|.
T Consensus       106 ~~-~~~~~~-~~si~l~W~~p~~----~i~~Y~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~p~t~Y~~~V~A~  177 (290)
T 3l5i_A          106 MD-LKAFPK-DNMLWVEWTTPRE----SVKKYILEWCVLSDKAPCITDWQQEDG--TVHRTYLRGNLAESKCYLITVTPV  177 (290)
T ss_dssp             EE-EEEEEE-TTEEEEEEECCSS----CCCEEEEEEEEECSSSCCCCEEEEEET--TCSEEECCSCCCTTCEEEEEEEEE
T ss_pred             ce-eEEEeC-CCeEEEEEeCCCC----CCCcEEEEEEECCCCCCCCcCeEEccC--CCcceEEecCcCCccEEEEEEEEE
Confidence            33 555544 4799999998653    689999999875443     3555432  446778889999999999999999


Q ss_pred             cCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCC-CCCCCccceEEEEEEeecCCCceEEEeeecCC
Q psy7040         302 NKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPP-EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGD  380 (716)
Q Consensus       302 n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p-~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~  380 (716)
                      |..|.+... .   +...+....|..|.++.+...+.+++.|+|.++ ....++.|.+|.|+++..++. +. .......
T Consensus       178 n~~g~g~~~-~---~~~~t~~~~P~~~p~~~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~-~~-~~~~~~~  251 (290)
T 3l5i_A          178 YADGPGSPE-S---IKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN-ET-AVNVDSS  251 (290)
T ss_dssp             ETTEECCCE-E---EEEESSCCCCSSCCCEEEEEECSSCEEEEECCCCHHHHSSCCCEEEEEEEETTSC-CE-EEEEETT
T ss_pred             eCCcccccE-E---EEeEccccCCCCCCeeeEeeccCCEEEEEEcCCChhccCCEEEEEEEEEEeCCCC-eE-EEEeCCC
Confidence            999987632 2   233345566776668888889999999999953 223455799999999987633 33 2334677


Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCC
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP  413 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~  413 (716)
                      ..+++|.+|.+++.|.|+|+|.|..| +..+..
T Consensus       252 ~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~  283 (290)
T 3l5i_A          252 HTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPE  283 (290)
T ss_dssp             CSEEEECSCCTTCEEEEEEEEEETTE-EEECCC
T ss_pred             ceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCc
Confidence            88999999999999999999999999 655543

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.92  E-value=1.1e-25  Score=251.19  Aligned_cols=285  Identities=20%  Similarity=0.268  Sum_probs=208.0

Q ss_pred             CCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcC--------------CCCcEEEeccc-----------CCCeEE
Q psy7040          59 GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP--------------ETGVWIPVGKT-----------REPEMD  113 (716)
Q Consensus        59 ~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~--------------~~~~~~~~~~~-----------~~~~~~  113 (716)
                      ..+.+..++.+++.|+|++|..+++.++.+|.|+|+..              +...|......           ..+++.
T Consensus       473 ~~l~v~~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~~~~~  552 (897)
T 2dtg_E          473 LKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWL  552 (897)
T ss_dssp             CCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEE
T ss_pred             eEEEEEEEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccccceE
Confidence            35788899999999999999866777899999999765              23456543321           147899


Q ss_pred             ecCCCCCcEEEEEEEE-EecCcc----CCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEE
Q psy7040         114 VTGLTPGHEYKFRVKA-LNKEGE----SEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLG  188 (716)
Q Consensus       114 i~~L~~~~~y~~~v~a-~~~~g~----~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~  188 (716)
                      |.+|+|++.|.|+|+| .|..|.    +.+|......+.                                         
T Consensus       553 l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~-----------------------------------------  591 (897)
T 2dtg_E          553 MRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD-----------------------------------------  591 (897)
T ss_dssp             ECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC-----------------------------------------
T ss_pred             eCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECC-----------------------------------------
Confidence            9999999999999999 898886    444443322221                                         


Q ss_pred             EeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCC
Q psy7040         189 VRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG  268 (716)
Q Consensus       189 i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~  268 (716)
                                                     .++|.+|.+ +.+.....+++.|+|++|...+| .+.+|.|+++.....
T Consensus       592 -------------------------------~~~Ps~P~~-l~~~~~s~tsI~LsW~pP~~~nG-~I~~Y~V~~~~~~~~  638 (897)
T 2dtg_E          592 -------------------------------ATNPSVPLD-PISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAED  638 (897)
T ss_dssp             -------------------------------CCCCCCCEE-EEEEECSSSCEEEEEECCCCSSS-SCSEEECCEEEECCC
T ss_pred             -------------------------------CCCCcCCcc-eEEEeCCCCEEEEEEeCCCCCCC-CeeEEEEEEEECCCC
Confidence                                           135677776 78888888999999999877666 499999987653220


Q ss_pred             -----------------------------------------------------------------CeEEcc---------
Q psy7040         269 -----------------------------------------------------------------RWTPAG---------  274 (716)
Q Consensus       269 -----------------------------------------------------------------~~~~~~---------  274 (716)
                                                                                       .|....         
T Consensus       639 ~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W~~~~~n~v~~~~p  718 (897)
T 2dtg_E          639 SELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRP  718 (897)
T ss_dssp             CSCTTCSSSCSCCCCCC---------------------------------------------------------------
T ss_pred             ccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhhhhhhhheeeeEEEccCceEEccCC
Confidence                                                                             111000         


Q ss_pred             ----------------------ccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCC--CCCCCCCC
Q psy7040         275 ----------------------ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPF--NQPGKPGT  330 (716)
Q Consensus       275 ----------------------~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~--~~p~~p~~  330 (716)
                                            ........+.|.+|.|++.|.|+|.|.|..|.+........+...+..  .+|.+|.+
T Consensus       719 ~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~T~~~~~~p~~P~~  798 (897)
T 2dtg_E          719 SRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGP  798 (897)
T ss_dssp             -----------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECCCCCCCCCCCCC
T ss_pred             CcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEeccCccCCCCCCcc
Confidence                                  001134789999999999999999999999987642223234443332  56788889


Q ss_pred             cEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEee--ecCCCCeEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040         331 PEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ--TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  408 (716)
Q Consensus       331 ~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~  408 (716)
                      +.+...+.+++.|+|.+|...+| .|.+|.|+|+..+...+.....  .......+++.+|.|+ .|.|+|+|.|..|.|
T Consensus       799 l~~~~~~~~sv~LsW~~P~~~nG-~I~~Y~V~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~pg-tY~~rV~A~n~~G~G  876 (897)
T 2dtg_E          799 VTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNG  876 (897)
T ss_dssp             CCCCSSSSSCCCCCCCCCCSCSS-CEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCCEEETTBCC
T ss_pred             eEEEeCCCCEEEEEECCCCCCCC-CEEEEEEEEEECCCcceEEEEeeeeecccCcEEECCCCCC-cEEEEEEEEeCCccc
Confidence            98888889999999999876555 6999999998766321111111  1346678999999999 699999999999999


Q ss_pred             CCCCCCCceEe
Q psy7040         409 EPSDPTAPHIA  419 (716)
Q Consensus       409 ~~s~~~~~~~~  419 (716)
                      ++|....+.+.
T Consensus       877 ~~S~~v~~~T~  887 (897)
T 2dtg_E          877 SWTEPTYFYVT  887 (897)
T ss_dssp             CCCCCCEECCC
T ss_pred             CCCCCEEEEeC
Confidence            99887665544

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.92  E-value=7.3e-26  Score=253.52  Aligned_cols=554  Identities=12%  Similarity=0.079  Sum_probs=79.3

Q ss_pred             CeEEecCCCCCcEEEEEEEEEecCccCCCccccceEE-ecCCCC---------ccc--c--cccccceecccCCCCC---
Q psy7040         110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSII-ARDPYS---------KYT--S--VSSLDSHKRSNQPCGS---  172 (716)
Q Consensus       110 ~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~-~~~p~~---------~~~--~--~~~~~~~~~~~~p~G~---  172 (716)
                      ..|.|.+++..+.+.|+|.+.+. +.+.  .....+. ...|..         ...  .  ....+.|.+.. |...   
T Consensus        86 ~~l~I~~~~~~d~G~Y~C~~~~~-~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w  161 (772)
T 3v2a_R           86 KTLTIPKVIGNDTGAYKCFYRET-DLAS--VIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSL  161 (772)
T ss_dssp             -------------------------------------------------CEEEEEEESSCCCEEEECCCCSC-SSCCEEE
T ss_pred             EEEEECCCcHhhCEeEEEEEcCC-CEEE--EEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCcEEEE
Confidence            57899999999999999999722 1111  1111111 111111         011  1  22445677765 2210   


Q ss_pred             -----CceEEE----EecCCccEEEEeccccCcceEEEEEEEeCCCCcee-EEEEEEecCCCC-----CCCCeEEeEEeC
Q psy7040         173 -----GMVRKV----QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSV-EVEVIVLDKPSP-----PGGPLKVSNVHA  237 (716)
Q Consensus       173 -----~~~~~~----~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~-~~~~~v~~~p~~-----p~~~~~~~~~~~  237 (716)
                           +.....    ........|.|.+++..|.|.|+|.+.+..+.... ...+.+...+.+     |..  .+....+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~--~~~v~~G  239 (772)
T 3v2a_R          162 CARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSH--GIELSVG  239 (772)
T ss_dssp             EEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCS--CEEEETT
T ss_pred             EecCCCccccCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCC--ceEEecC
Confidence                 011000    00123577999999999999999999986543222 233333322211     111  1234467


Q ss_pred             CeEEEEEECCCCCCCCccceEEEEEEeCCCCC----eEE--cc-----ccCcccceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy7040         238 EGVTLDWKVPDDDGGQPIEKYVVDKMDEATGR----WTP--AG-----ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK  306 (716)
Q Consensus       238 ~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~----~~~--~~-----~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~  306 (716)
                      +.++|.|.......  +...  +.|...+...    ...  ..     ........+.|.++...+.+.|+|.|.|..|.
T Consensus       240 ~~v~L~C~~~~~~~--~~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~  315 (772)
T 3v2a_R          240 EKLVLNCTARTELN--VGID--FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT  315 (772)
T ss_dssp             CCEEEEEEEEECTT--CCCE--EEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCE
T ss_pred             CcEEEEEEEecCCC--Ccee--EEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcc
Confidence            88899998632211  1112  2222221110    000  00     11123567999999999999999999987664


Q ss_pred             CCCCcccceEEecCCCCCCCCC-CCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEE
Q psy7040         307 SEPLTTTASIEAKNPFNQPGKP-GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGK  385 (716)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~p~~p-~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~  385 (716)
                      ...  . ..+.+..+......+ .........+..+.|.|.....    +..  .+.|...+ ......... .....+.
T Consensus       316 ~~~--~-~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~----p~~--~v~W~~~g-~~l~~~~~~-~~~~~L~  384 (772)
T 3v2a_R          316 KKN--S-TFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGY----PPP--EIKWYKNG-IPLESNHTI-KAGHVLT  384 (772)
T ss_dssp             EEE--E-EEEEEECCCC---------------------------------------------------------------
T ss_pred             eeE--E-EEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeee----CCC--eEEEEECC-EeCCCCceE-ccceeEE
Confidence            221  1 112222111111111 0011222344566777765221    111  11222211 000000000 1336688


Q ss_pred             ecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCccccccc--ccEEEecCCeEEEEEEEeccCCCe-EEEEe
Q psy7040         386 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQL--SDIKVRAGSNFEFDINVIGEPIPT-KEWLC  462 (716)
Q Consensus       386 i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~--~~~~~~~g~~~~~~~~v~~~p~~~-~~W~~  462 (716)
                      |.++...+.+.|+|.|.|..|....+........    .+|.+.....  ....+..|+.+.|.|.+.+.|.+. +.|++
T Consensus       385 i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~----~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~  460 (772)
T 3v2a_R          385 IMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY----VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYW  460 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EecCChhcCceEEEEEEECCcCeEEEEEEEEEEe----cCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEE
Confidence            8899999999999999999886543332222111    2444332111  112377899999999999999997 99998


Q ss_pred             CCeEec--------------------------------c-CCcEEEEeC--CCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         463 NDITII--------------------------------S-KDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       463 ~~~~~~--------------------------------~-~~~~~~~~~--~~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      ++....                                . .....+...  .....|.|.++  .+.|.|+|.|.|..|.
T Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~  538 (772)
T 3v2a_R          461 QLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGR  538 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccc
Confidence            643210                                0 001111111  11245666665  6889999999999998


Q ss_pred             eeeEEEEEEE---EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecc-------------------
Q psy7040         508 DKGTAKVTVL---GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN-------------------  565 (716)
Q Consensus       508 ~~~s~~~~v~---~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~-------------------  565 (716)
                      ......+.+.   .+.+.-......+......|.+...+.    +.+.|++.+........                   
T Consensus       539 ~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~~~p~----~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  614 (772)
T 3v2a_R          539 GERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTF----ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNA  614 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceeEEEEEECCceeeccCCcccccCCceEEEEeccCCCC----CCcEEEEcCCcccccccCcccccccccccceeeccc
Confidence            8877777666   222211111112222233444443333    33889886643221100                   


Q ss_pred             ------ccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccce--eeec--cCCCCCCccceeeccceeEEEEEEeeEEEEe
Q psy7040         566 ------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI--EVVV--TDKPSAPEGPIQWLLTLTDVTWEISNYLQEL  635 (716)
Q Consensus       566 ------~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~--~~~v--~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~  635 (716)
                            ......+.|.++...+.+.|+|.|.|..|....+.  .+.|  ..+|...   .......+.     .|..+  
T Consensus       615 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~---~~~~~~~v~-----~g~~~--  684 (772)
T 3v2a_R          615 TMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTIT---GNLENQTTS-----IGESI--  684 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEee---cCCCceEEe-----CCCCE--
Confidence                  00123488999999999999999999665433222  2223  3344311   111111111     12222  


Q ss_pred             eeeccCcee----eEEEEeCCeEeeec----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCC
Q psy7040         636 HSSLMPISL----ESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP  705 (716)
Q Consensus       636 ~~~~~~~~~----~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p  705 (716)
                       .|.|.+.|    .+.|+++|..+..+    .......|.|.++..+|+|.|+|.|.|..|....++.|.|..+|...
T Consensus       685 -~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~  761 (772)
T 3v2a_R          685 -EVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT  761 (772)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             -EEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCcc
Confidence             37888877    89999999988665    12234789999999999999999999999999999999999988765

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.91  E-value=1.7e-23  Score=213.74  Aligned_cols=365  Identities=15%  Similarity=0.136  Sum_probs=167.2

Q ss_pred             CCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEc---cccCcccceEEEcCCCCCCeEEEEEE
Q psy7040         223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPA---GETEGPVTGLEVEGLIPNHKYKFRVR  299 (716)
Q Consensus       223 p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~---~~~~~~~~~~~i~~L~p~~~y~~~v~  299 (716)
                      ..+|.+ +.+... ..++.|+|+++.+.+ .++. |.|+++..+...|...   .......+.++..+|.+++.|.|+|+
T Consensus         8 l~~P~n-v~~~~~-~~~~~L~W~p~~~~~-~~i~-Y~V~y~~~~~~~W~~~~~c~~~~~~~~~~t~~~l~~~~~Y~~rV~   83 (414)
T 3se4_A            8 LKSPQK-VEVDII-DDNFILRWNRSDESV-GNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIR   83 (414)
T ss_dssp             ---CCC-CCEEEE-TTEEEEC-----------CE-EEEEEEESSCCCCEEEEEEEEESCSCEECCSSCCCTTSCEEEEEE
T ss_pred             CCCCce-eEEEEE-CCceEEEEcCCCCCC-CCeE-EEEEEEECCCCCcEECcCccCCCCCEEECCcccccCCCcEEEEEE
Confidence            456777 777776 567899999876643 3566 9999998777788743   22233345566667899999999999


Q ss_pred             EEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCC------ccceEEEEEEeecCCCceEE
Q psy7040         300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGG------SPIVGYIIEKKEKYSPIWEK  373 (716)
Q Consensus       300 a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~------~~i~~y~v~~~~~~~~~~~~  373 (716)
                      |.| .+.+.++..........  ..+++| .+.+... .+++.|+|. |...++      +.+.+|+|.|+..++.....
T Consensus        84 A~n-~~~S~~s~~~~~~~~~~--~~~~pP-~v~~~~~-~~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~y~~~~~~~~~~  157 (414)
T 3se4_A           84 AEK-ENTSSWYEVDSFTPFRK--AQIGPP-EVHLEAE-DKAIVIHIS-PGTKDSVMWALDGLSFTYSLVIWKNSSGVEER  157 (414)
T ss_dssp             EEE-TTEEEEEECCCBCHHHH--CCCCCC-EEEEEEC-SSCEEEEEE-CSSSSCTTTGGGGSSCEEEEEEEETTTCCEEE
T ss_pred             Eee-CCcCCCEecCceeeccc--ceeCCC-eEEEEEc-CCEEEEEEE-cCCCCCceeeeecCcEEEEEEEEECCCCceEE
Confidence            999 55554433221111111  123344 3666544 468999999 654432      35789999998877554322


Q ss_pred             EeeecCCCCeEEecCCCCCCeEEEEEEEEeC--CCCCCCCCCCCceEeecCC-CCCcccccccccEEEecCCeEEEEEEE
Q psy7040         374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK--GGPGEPSDPTAPHIARAKK-VSPYINRDQLSDIKVRAGSNFEFDINV  450 (716)
Q Consensus       374 ~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~--~g~~~~s~~~~~~~~~~~~-~~P~~~~~~~~~~~~~~g~~~~~~~~v  450 (716)
                         ......++.|.+|.|++.|.|+|+|.|.  .|.|..|......+....+ .+|.                 ++    
T Consensus       158 ---~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~-----------------~v----  213 (414)
T 3se4_A          158 ---IENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPE-----------------NI----  213 (414)
T ss_dssp             ---EEEECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCE-----------------EE----
T ss_pred             ---EecCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCC-----------------cc----
Confidence               2245678999999999999999999994  5777666543332222111 1111                 11    


Q ss_pred             eccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCC
Q psy7040         451 IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDG  530 (716)
Q Consensus       451 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~  530 (716)
                                                                     ++.+.| .            ++.|+|++|..  
T Consensus       214 -----------------------------------------------~~~~~~-~------------~~~l~W~pp~~--  231 (414)
T 3se4_A          214 -----------------------------------------------EVSVQN-Q------------NYVLKWDYTYA--  231 (414)
T ss_dssp             -----------------------------------------------EEEEET-T------------EEEEEEECSSS--
T ss_pred             -----------------------------------------------EEEEec-C------------CeEEEECCCCC--
Confidence                                                           111111 0            67899999742  


Q ss_pred             CCceeeEEEEEEecC----CCceeeeEEEccceeeeeccccceeEEEEc-CCCCCCeEEEEEEEEcCCCCCccceeeec-
Q psy7040         531 GAPIEYYMVEKMETD----TGKVLIKWIRTNDKRVTIDNVDYFTKITIR-PLQRSDTAQYTVTATNSQGKDQVFIEVVV-  604 (716)
Q Consensus       531 ~~~i~~y~v~~~~~~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~-~L~~~~~y~~~v~a~n~~G~~~~s~~~~v-  604 (716)
                         ..+|.|+|....    .+.-...|........     .....+.+. +|.+++.|.|+|+|.|..|.|+++....+ 
T Consensus       232 ---~~~Y~v~y~~~~~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~  303 (414)
T 3se4_A          232 ---NMTFQVQWLHAFLKRNPGNHLYKWKQIPDCEN-----VKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFD  303 (414)
T ss_dssp             ---SCEEEEEEEESGGGSCCCC--CCCCBCSTTTT-----BSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEE
T ss_pred             ---CeEEEEEEEehhccccccccccCceECCCccC-----CCCCEEcCCcccccCccEEEEEEEecCCCccccccccccc
Confidence               359999998630    0000134543211000     012556665 69999999999999999999988765552 


Q ss_pred             ------cCCCCCCccceeeccceeEEEEE----E------eeEEEEeeeeccCceeeEEEEeCCeEeeecccceeeEEEE
Q psy7040         605 ------TDKPSAPEGPIQWLLTLTDVTWE----I------SNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITI  668 (716)
Q Consensus       605 ------~~~p~~~~~~~~~~~~~v~l~w~----i------~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i  668 (716)
                            +.+|. .. +. ...+++.|.|.    .      .+|.+.|.         +.+.+++.............+.|
T Consensus       304 t~~~~~~~pP~-l~-~~-~~~~si~v~W~~P~~~~~~~~~~~~~~~Y~---------v~y~~~~~~~~~~~~~~~~~~~l  371 (414)
T 3se4_A          304 TEIQAFLLPPV-FN-IR-SLSDSFHIYIGAPKQSGNTPVIQDYPLIYE---------IIFWENTSNAERKIIEKKTDVTV  371 (414)
T ss_dssp             TTCC----------------------------------------------------------------------------
T ss_pred             chhccccCCCe-EE-EE-ECCCeEEEEEECCCCccccchhhcCCeEEE---------EEEEECCCCceEEEEecCCeEEe
Confidence                  34444 33 33 34679999998    1      12443332         22222221111111123467999


Q ss_pred             ccCCCCCcEEEEEEEEcC----CCCceeeEEEEEecCCC
Q psy7040         669 RPLQRSDTAQYTVTATNS----QGKDQVFIEVVVTDKPS  703 (716)
Q Consensus       669 ~~l~~~~~y~y~~~a~n~----~G~~~~s~~l~v~~~p~  703 (716)
                      .+|.+++.|.+++.|.+.    .|.+..|..+.+.+.+.
T Consensus       372 ~~L~p~t~Y~~~V~A~~~~~~~~g~g~~S~~~~~~T~~~  410 (414)
T 3se4_A          372 PNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPG  410 (414)
T ss_dssp             ---------------------------------------
T ss_pred             CCCCCCCeEEEEEEEEecccccCCCCCCCCCEeEEeCCC
Confidence            999999999999999993    58888887777777554

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.91  E-value=7.3e-23  Score=217.64  Aligned_cols=452  Identities=13%  Similarity=0.087  Sum_probs=250.3

Q ss_pred             EEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccce
Q psy7040         203 TAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG  282 (716)
Q Consensus       203 ~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~  282 (716)
                      .+.+..|.....+.|.+..+|.....+-.+....++.++|.|...    +    .+.+..  .+...  .   .......
T Consensus        17 ~~~~~~g~~~~~i~l~v~~pP~i~~~~~~~~v~~G~~v~l~C~~~----~----~v~W~~--~~~~~--~---~~~~~~~   81 (524)
T 2ec8_A           17 LLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDP----G----FVKWTF--EILDE--T---NENKQNE   81 (524)
T ss_dssp             CC--------------CCCCCEEESCCSEEECCTTSCEEEEEECT----T----EEEEEE--ESSSC--C---EEECSSE
T ss_pred             hhhhhcCCCCCeEEcCCCCCCccCCCCceEEEeCCCeEEEEEeCC----c----eEEEcC--CCccc--c---ccCccce
Confidence            455666766677777777777432222345556788999999952    2    222222  22211  0   1234688


Q ss_pred             EEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEE
Q psy7040         283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIE  362 (716)
Q Consensus       283 ~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~  362 (716)
                      +.|.++...+.+.|+|.|.|  |.    .....+.+..+...-..+.++.+  ..+..+.|.|.....    +.  ..+.
T Consensus        82 L~I~~~~~~D~G~Y~C~a~n--g~----~~~~~l~V~~p~~~~~~~~~~~v--~~G~~v~l~C~~~~~----~~--~~v~  147 (524)
T 2ec8_A           82 WITEKAEATNTGKYTCTNKH--GL----SNSIYVFVRDPAKLFLVDRSLYG--KEDNDTLVRCPLTDP----EV--TNYS  147 (524)
T ss_dssp             EEESSCCSTTCEEEEEEETT--SC----EEEEEEECCCSSCSBCCCCCCCE--ETTSCEEECCCBSCC----CC--SCEE
T ss_pred             EEEcccchhhCEEEEEeecC--Cc----ceEEEEEECCCCcccccccceEE--EcCCeEEEECcCCCC----cc--ceEE
Confidence            99999999999999999988  42    11212333221111122333333  346678888887321    11  1223


Q ss_pred             Eee-cCCC-c-eEEEeeecCCCCeEEecCCCCCCeE-EEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEE
Q psy7040         363 KKE-KYSP-I-WEKCAQTEGDTPKGKVLDLIEGNQY-EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKV  438 (716)
Q Consensus       363 ~~~-~~~~-~-~~~~~~~~~~~~~~~i~~l~~~~~Y-~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~  438 (716)
                      |.. .+.. . .....  ......+.|.++...+.+ .|+|.|.|..|... +.............+|.+... +....+
T Consensus       148 W~~~~g~~l~~~~~~~--~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~-s~~~~l~V~~~~~~~p~i~~~-~~~~~v  223 (524)
T 2ec8_A          148 LKGCQGKPLPKDLRFI--PDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVL-SEKFILKVRPAFKAVPVVSVS-KASYLL  223 (524)
T ss_dssp             EECSSSCCCCSSCEEE--EETTTEEEEESCCGGGTTCEEEEEEC----CCC-CCCEECCEECCCCSCCEEECS-CSEEEE
T ss_pred             EEccCCcCcCCCCcee--ECCCccEEEeccchhhCCceEEEEEEECCceEE-EEEEEEEEEeCCCCCCcEEec-CCcceE
Confidence            321 1100 0 00111  113457899999999999 99999998765432 211111111122346665432 345589


Q ss_pred             ecCCeEEEEEEEeccCCCe-EEEEeCCeEe--ccCCcEEEEe---CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         439 RAGSNFEFDINVIGEPIPT-KEWLCNDITI--ISKDRFKIVN---DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       439 ~~g~~~~~~~~v~~~p~~~-~~W~~~~~~~--~~~~~~~~~~---~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      ..|+.+.|.|.+.+.|.+. +.|++++..+  .......+..   ......|.|.++...|.|.|+|.|.|..|......
T Consensus       224 ~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~  303 (524)
T 2ec8_A          224 REGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT  303 (524)
T ss_dssp             ETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEE
T ss_pred             EcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEE
Confidence            9999999999999999887 9999998873  3222222221   12356899999999999999999999999988888


Q ss_pred             EEEEE---EEEEEEeCC----CCCCCCceeeEEEEEEecCCCcee-eeEEEccceeeeec-----ccc-----ceeEEEE
Q psy7040         513 KVTVL---GCSLKWNPP----EDDGGAPIEYYMVEKMETDTGKVL-IKWIRTNDKRVTID-----NVD-----YFTKITI  574 (716)
Q Consensus       513 ~~~v~---~v~l~W~~p----~~~~~~~i~~y~v~~~~~~~~~~~-~~w~~~~~~~~~~~-----~~~-----~~~~~~i  574 (716)
                      .+.+.   .+.+.-..+    ...+......|.+..    .+.+. +.|++.+.......     ...     ....+.|
T Consensus       304 ~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g----~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i  379 (524)
T 2ec8_A          304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEA----FPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL  379 (524)
T ss_dssp             EEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEE----ESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEE
T ss_pred             EEEEeccCceEeecCCCceEEEcCCCcEEEEEEEee----cCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEE
Confidence            88776   333221110    122223234444432    24455 89998876543221     000     2368999


Q ss_pred             cCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEe
Q psy7040         575 RPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLM  650 (716)
Q Consensus       575 ~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~  650 (716)
                      .++...+.+.|+|.|.|..|....+..+.|..+|.... .....          .|      .|.|.+.|    .+.|++
T Consensus       380 ~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~-~~~~~----------~g------~l~C~~~g~P~p~i~W~~  442 (524)
T 2ec8_A          380 TRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILT-YDRLV----------NG------MLQCVAAGFPEPTIDWYF  442 (524)
T ss_dssp             CSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEE-EECCS----------SS------CEEEEEEEESCCEEECCC
T ss_pred             eecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEee-cccCc----------Cc------EEEEEEEeecCCEEEEEE
Confidence            99999999999999999999866666666766554221 11111          11      37777777    899999


Q ss_pred             CCeEeee--------c------ccceeeEE----EEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCC
Q psy7040         651 NDKRVTI--------D------NVDYFTKI----TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP  708 (716)
Q Consensus       651 ~~~~~~~--------~------~~~~~~~~----~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~p  708 (716)
                      ++..+..        +      .......+    .+......|.|.|+|.|.|..|....++.|.|.+++.+...|
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~~~~~~  518 (524)
T 2ec8_A          443 CPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP  518 (524)
T ss_dssp             C----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC----------
T ss_pred             CCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCHHHcCc
Confidence            9765521        0      00111222    244444699999999999999999999999999887766443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.90  E-value=5.9e-20  Score=198.32  Aligned_cols=414  Identities=11%  Similarity=0.046  Sum_probs=246.1

Q ss_pred             eEEEEe--cCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCC
Q psy7040         175 VRKVQH--LDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGG  252 (716)
Q Consensus       175 ~~~~~~--~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~  252 (716)
                      |+.+..  ......|.|.+++..|+|.|+|.|.|..|..+..+.|.|..+|.....+.......+..+.|.|......  
T Consensus        63 r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~--  140 (585)
T 2ocw_A           63 RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTEN--  140 (585)
T ss_pred             eEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCC--
Confidence            444443  2344679999999999999999999999998889999999888765544455566788999999964221  


Q ss_pred             CccceEEEEEEeCC----------------CCCeEEcc-ccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccce
Q psy7040         253 QPIEKYVVDKMDEA----------------TGRWTPAG-ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS  315 (716)
Q Consensus       253 ~~~~~y~v~~~~~~----------------~~~~~~~~-~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~  315 (716)
                       +...+.+......                ..+..... ........+.|.++...+.+.|+|.|.|..|......   .
T Consensus       141 -~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~---~  216 (585)
T 2ocw_A          141 -AQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNA---D  216 (585)
T ss_pred             -CCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceE---E
Confidence             1122222221110                00000000 0011123799999999999999999998777532211   1


Q ss_pred             EEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEe-ecCC----------------CceEEEee-e
Q psy7040         316 IEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK-EKYS----------------PIWEKCAQ-T  377 (716)
Q Consensus       316 ~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~-~~~~----------------~~~~~~~~-~  377 (716)
                      +.+..     .+|..+.  ...+..+.|.|.. ..... .  .-.+.|. ..+.                ........ .
T Consensus       217 l~V~~-----~~p~~~~--~~~G~~v~l~C~~-~~~~~-~--~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (585)
T 2ocw_A          217 LQVLK-----PEPELVY--EDLRGSVTFHCAL-GPEVA-N--VAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQD  285 (585)
T ss_pred             EEEcc-----CCCceeE--EcCCCcEEEEEEc-CCCCC-C--ceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccC
Confidence            22221     1232222  2345667777764 11110 1  0122222 1110                00000000 0


Q ss_pred             cCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCC--CCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCC
Q psy7040         378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD--PTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI  455 (716)
Q Consensus       378 ~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~--~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~  455 (716)
                      ......+.|.++...+.+.|+|.|.|. |....+.  ......+.   .+|.+. ..+..+.+..|..+.|.|.+.+.|.
T Consensus       286 ~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~---~~p~~~-~~~~~~~~~~G~~v~l~C~~~~~p~  360 (585)
T 2ocw_A          286 KDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVN---EESTIP-RSPTVVKGVAGSSVAVLCPYNRKES  360 (585)
T ss_pred             CCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEe---cccccc-cCCcceEEEeCCcEEEEEecCCCCC
Confidence            011226889999999999999999995 4332211  11111121   234443 2346778889999999999999999


Q ss_pred             CeE----EEEe--CCe--Eecc---------CCcEEEEeC--CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         456 PTK----EWLC--NDI--TIIS---------KDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       456 ~~~----~W~~--~~~--~~~~---------~~~~~~~~~--~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      +.+    .|++  ++.  .+..         ..++.+...  .....|.|.++...|.|.|+|.| |..|....++.+.+
T Consensus       361 p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V  439 (585)
T 2ocw_A          361 KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKI  439 (585)
T ss_pred             ccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEE
Confidence            987    7999  776  3322         234444432  23346999999999999999999 88876655554444


Q ss_pred             EEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy7040         517 LGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD  596 (716)
Q Consensus       517 ~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~  596 (716)
                      ..     .+|.      +.   .     .                        ...   .+..|..-.+.|.+....   
T Consensus       440 ~~-----~~p~------~~---~-----~------------------------~~~---~v~~G~~v~L~C~~~~~~---  470 (585)
T 2ocw_A          440 IE-----GEPN------LK---V-----P------------------------GNV---TAVLGETLKVPCHFPCKF---  470 (585)
T ss_pred             ec-----Cccc------cc---c-----C------------------------Cce---eEecCCcEEEEEEecCCC---
Confidence            31     0110      00   0     0                        000   122344455666653100   


Q ss_pred             ccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeecc-------------ccee
Q psy7040         597 QVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDN-------------VDYF  663 (716)
Q Consensus       597 ~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~-------------~~~~  663 (716)
                                 +..|.                         .      .+.|+++|..+....             .+..
T Consensus       471 -----------~~~p~-------------------------~------~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~  508 (585)
T 2ocw_A          471 -----------SSYEK-------------------------Y------WCKWNNTGCQALPSQDEGPSKAFVNCDENSRL  508 (585)
T ss_pred             -----------CCCcc-------------------------E------EEEEeecCceeeeccCCCCCcceEEecCcccE
Confidence                       01111                         0      467888887664331             1223


Q ss_pred             eEEEEccCCCCCcEEEEEEEEcCCCCceee-EEEEEecCC
Q psy7040         664 TKITIRPLQRSDTAQYTVTATNSQGKDQVF-IEVVVTDKP  702 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s-~~l~v~~~p  702 (716)
                      ..|.|.++...|+|.|+|.|.|..|.+... ..|.|..+|
T Consensus       509 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             EEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            689999999999999999999999987644 889999987

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.90  E-value=1.5e-24  Score=242.07  Aligned_cols=350  Identities=12%  Similarity=0.071  Sum_probs=199.4

Q ss_pred             eEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeC--------------CCCCeEEccccCc---------ccceEEEc
Q psy7040         230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDE--------------ATGRWTPAGETEG---------PVTGLEVE  286 (716)
Q Consensus       230 ~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~--------------~~~~~~~~~~~~~---------~~~~~~i~  286 (716)
                      +.+.....+++.|+|++|..+++.++.+|.|+++..              +...|........         ....+.+.
T Consensus       475 l~v~~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~  554 (897)
T 2dtg_E          475 FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMR  554 (897)
T ss_dssp             CSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEEC
T ss_pred             EEEEEEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccccceEeC
Confidence            678889999999999998766677899999998764              2345654432211         25789999


Q ss_pred             CCCCCCeEEEEEEE-EcCCCCCC-CCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEe
Q psy7040         287 GLIPNHKYKFRVRA-VNKQGKSE-PLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK  364 (716)
Q Consensus       287 ~L~p~~~y~~~v~a-~n~~g~~~-~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~  364 (716)
                      +|.|++.|.|+|.| .|..|.+. .+..+..+.+.+...+|.+|.++.+...+.+++.|+|.+|..++| .|.+|.|+|+
T Consensus       555 ~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG-~I~~Y~V~~~  633 (897)
T 2dtg_E          555 GLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWE  633 (897)
T ss_dssp             SCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEECSSSCEEEEEECCCCSSS-SCSEEECCEE
T ss_pred             CCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEeCCCCEEEEEEeCCCCCCC-CeeEEEEEEE
Confidence            99999999999999 89888631 122233355566667899999999999999999999999866555 6999999998


Q ss_pred             ecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeE
Q psy7040         365 EKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNF  444 (716)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~  444 (716)
                      ........     . .........|.|++.|.|+|.|.+..+.+..+...........+..|.       .+....   .
T Consensus       634 ~~~~~~~~-----~-~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~-------~~~~~~---~  697 (897)
T 2dtg_E          634 RQAEDSEL-----F-ELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDS-------QILKEL---E  697 (897)
T ss_dssp             EECCCCSC-----T-TCSSSCSCCCCCC----------------------------------------------------
T ss_pred             ECCCCccc-----e-ecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCccc-------chhhhh---h
Confidence            76532210     0 111122345889999999999999877654432111111111111111       011100   1


Q ss_pred             EEEEEEeccCCCe-EEEEeC-Ce---Eec---c----CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee--
Q psy7040         445 EFDINVIGEPIPT-KEWLCN-DI---TII---S----KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG--  510 (716)
Q Consensus       445 ~~~~~v~~~p~~~-~~W~~~-~~---~~~---~----~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~--  510 (716)
                      .-.+.+.|.+... ..+... ..   .+.   .    ...+.+...+....+.|.+|.+++.|.|+|.|.|..|.+..  
T Consensus       698 ~~s~~~~W~~~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s  777 (897)
T 2dtg_E          698 ESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCS  777 (897)
T ss_dssp             --------------------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBC
T ss_pred             hhheeeeEEEccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCCCCC
Confidence            1122234433221 000000 00   000   0    00000011223468999999999999999999999886431  


Q ss_pred             -EEEEEEE----------------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecccc
Q psy7040         511 -TAKVTVL----------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVD  567 (716)
Q Consensus       511 -s~~~~v~----------------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~  567 (716)
                       +..+.+.                      ++.|+|++|...+|. |.+|.|+|+.... .....+...       ....
T Consensus       778 ~s~~v~~~T~~~~~~p~~P~~l~~~~~~~~sv~LsW~~P~~~nG~-I~~Y~V~y~~~~~-~~~~~~~~~-------~~~~  848 (897)
T 2dtg_E          778 VAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGL-IVLYEVSYRRYGD-EELHLCDTR-------KHFA  848 (897)
T ss_dssp             CCCCEEEECCCCCCCCCCCCCCCCCSSSSSCCCCCCCCCCSCSSC-EEEECCCCBSSSB-CCCCCCCCS-------SSCC
T ss_pred             CCceeEEeccCccCCCCCCcceEEEeCCCCEEEEEECCCCCCCCC-EEEEEEEEEECCC-cceEEEEee-------eeec
Confidence             2212211                      799999999876665 9999999987653 100011000       0001


Q ss_pred             ceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccC
Q psy7040         568 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  606 (716)
Q Consensus       568 ~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~  606 (716)
                      ....+.+.+|.|+ .|.|+|+|.|.+|.|+++..+.+..
T Consensus       849 ~~~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~~v~~~T  886 (897)
T 2dtg_E          849 LERGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYV  886 (897)
T ss_dssp             CTTCCCCCSCCSS-EECCCCCEEETTBCCCCCCCCEECC
T ss_pred             ccCcEEECCCCCC-cEEEEEEEEeCCcccCCCCCEEEEe
Confidence            2377899999999 6999999999999999998888533

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.90  E-value=2.4e-22  Score=196.62  Aligned_cols=229  Identities=15%  Similarity=0.136  Sum_probs=175.4

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCCCc---eeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEE
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENINGKD---SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV  259 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~---~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~  259 (716)
                      ....|.|.++... .|.|+|.|.|. |..   ...+.+.+..+|.+|.+ +.+.....++++|+|.+|.+. + ...+|.
T Consensus        63 ~~~~L~i~~~~~~-~g~Y~C~a~~~-g~~~~~~~~~~l~v~~~P~~P~~-l~~~~~~~~~v~l~W~~~~~~-~-~~~~Y~  137 (303)
T 1i1r_A           63 TASSVTFTDIASL-NIQLTCNILTF-GQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRET-H-LETNFT  137 (303)
T ss_dssp             TEEEEEECSCCCS-EEEEEEEEEET-TTEEEEEEEEEEEEECCCCCCEE-EEEEEETTSCCEEEEECCSCC-S-SCCEEE
T ss_pred             cEEEEEEcCcCCC-ceEEEEecccC-CCcceEEEEEEEeccCCCCCCee-eEEEECCCCcEEEEccCCCCC-C-CCcCEE
Confidence            3568999999998 49999999884 442   34466778889999988 788777778999999987654 3 357999


Q ss_pred             EEEEeCCCCCeEEccccCcccceEEEcCC-CCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEee--
Q psy7040         260 VDKMDEATGRWTPAGETEGPVTGLEVEGL-IPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF--  336 (716)
Q Consensus       260 v~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~--  336 (716)
                      |+++......| .+.........+.|.+| .+++.|.|+|.|.|..|.+.++...   ........|.+|.++.+...  
T Consensus       138 v~~~~~~~~~~-~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~---~~~~~~~~p~pP~~~~v~~~~~  213 (303)
T 1i1r_A          138 LKSEWATHKFA-DCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN---FDPVYKVKPNPPHNLSVINSEE  213 (303)
T ss_dssp             EEEEETTEECC-CEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEE---ECGGGGEECCCCEEEEEECCSS
T ss_pred             EEEEecCCCCc-cCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccCCEE---ECHHHeEecCCCcceEEEEecC
Confidence            99876543222 22223355689999999 9999999999999999987532221   11111245788888888754  


Q ss_pred             eCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeee--cCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCC
Q psy7040         337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT--EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT  414 (716)
Q Consensus       337 ~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~  414 (716)
                      +.+++.|+|.+|...+ +.+.+|+|+|+..+...|......  ......+.|.+|.+++.|.|+|+|.|..|.|.+|+++
T Consensus       214 ~~~sv~l~W~~p~~~~-~~i~~Y~v~y~~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS  292 (303)
T 1i1r_A          214 LSSILKLTWTNPSIKS-VIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWS  292 (303)
T ss_dssp             SSSCEEEEEECCGGGG-TSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCC
T ss_pred             CCCEEEEEECCCCCCC-cccEEEEEEEEeCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCC
Confidence            6689999999987654 479999999999877778765432  4566889999999999999999999999999999888


Q ss_pred             CceEeec
Q psy7040         415 APHIARA  421 (716)
Q Consensus       415 ~~~~~~~  421 (716)
                      ......+
T Consensus       293 ~~~~~~T  299 (303)
T 1i1r_A          293 EEASGIT  299 (303)
T ss_dssp             CCEEEEC
T ss_pred             CccceeC
Confidence            7665543

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.90  E-value=1.7e-22  Score=196.71  Aligned_cols=274  Identities=19%  Similarity=0.178  Sum_probs=178.3

Q ss_pred             cCCCCCCCCeEEeEE-----eCCeEEEEEECCC-CCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeE
Q psy7040         221 DKPSPPGGPLKVSNV-----HAEGVTLDWKVPD-DDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKY  294 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~-----~~~~~~l~W~~p~-~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y  294 (716)
                      ++|..|.+ +.....     +.+++.|.|+++. ...+.++.+|.|++.......+. .     ......+.+|.+++.|
T Consensus         2 ~~Ps~p~~-~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~~~-~-----~~~~~~~~~l~p~t~Y   74 (290)
T 3l5i_A            2 DRPSKAPS-FWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN-Y-----TVNATKLTVNLTNDRY   74 (290)
T ss_dssp             CCCSSCCC-EEEEEEECSSTTCEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCCEE-E-----EESSSEEEEEECSSCE
T ss_pred             CCCCCCCc-eeEEecccccCCCceEEEEEccCCchhcCCceEeEEEEEEeCCcCcee-E-----ecCCcEEEEEcCCceE
Confidence            46766666 444332     2589999999733 22344789999999876554321 1     1234466789999999


Q ss_pred             EEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC-----
Q psy7040         295 KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP-----  369 (716)
Q Consensus       295 ~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~-----  369 (716)
                      .|+|.|.|..|.+.++..   ........+|.++.++.+.... +++.|+|.+|..    .+.+|.|+|+..+..     
T Consensus        75 ~~~V~A~n~~G~s~~s~~---~~~~~~~~~~~p~~~~~~~~~~-~si~l~W~~p~~----~i~~Y~v~~~~~~~~~~~~~  146 (290)
T 3l5i_A           75 LATLTVRNLVGKSDAAVL---TIPACDFQATHPVMDLKAFPKD-NMLWVEWTTPRE----SVKKYILEWCVLSDKAPCIT  146 (290)
T ss_dssp             EEEEEEEESSCBCCCEEE---EECCTTCCCCCCCEEEEEEEET-TEEEEEEECCSS----CCCEEEEEEEEECSSSCCCC
T ss_pred             EEEEEEEcCCCCCCCceE---EeecccccCCCccceeEEEeCC-CeEEEEEeCCCC----CCCcEEEEEEECCCCCCCCc
Confidence            999999999998755522   2222212345566677776654 799999999643    589999999876533     


Q ss_pred             ceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEE
Q psy7040         370 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDIN  449 (716)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~  449 (716)
                      .|...  .......+.+.+|.+++.|.|+|+|.|..|.|....    ........+|...                    
T Consensus       147 ~~~~~--~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~~~----~~~~t~~~~P~~~--------------------  200 (290)
T 3l5i_A          147 DWQQE--DGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPES----IKAYLKQAPPSKG--------------------  200 (290)
T ss_dssp             EEEEE--ETTCSEEECCSCCCTTCEEEEEEEEEETTEECCCEE----EEEESSCCCCSSC--------------------
T ss_pred             CeEEc--cCCCcceEEecCcCCccEEEEEEEEEeCCcccccEE----EEeEccccCCCCC--------------------
Confidence            24433  245566788899999999999999999999876311    1111111112100                    


Q ss_pred             EeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCC-C
Q psy7040         450 VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPE-D  528 (716)
Q Consensus       450 v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~-~  528 (716)
                            +.                          +.+..+...                         ++.|+|+++. .
T Consensus       201 ------p~--------------------------~~~~~~~~~-------------------------sv~l~W~~~~~~  223 (290)
T 3l5i_A          201 ------PT--------------------------VRTKKVGKN-------------------------EAVLEWDQLPVD  223 (290)
T ss_dssp             ------CC--------------------------EEEEEECSS-------------------------CEEEEECCCCHH
T ss_pred             ------Ce--------------------------eeEeeccCC-------------------------EEEEEEcCCChh
Confidence                  00                          000000011                         7999999532 2


Q ss_pred             CCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeecc
Q psy7040         529 DGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  605 (716)
Q Consensus       529 ~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~  605 (716)
                      ..++.+.+|.|++.....    . |....       .......+.|.+|.+++.|.|+|+|.|..| |..+..+.+.
T Consensus       224 ~~~g~i~~Y~v~~~~~~~----~-~~~~~-------~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~~~~~  287 (290)
T 3l5i_A          224 VQNGFIRNYTIFYRTIIG----N-ETAVN-------VDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFTFT  287 (290)
T ss_dssp             HHSSCCCEEEEEEEETTS----C-CEEEE-------EETTCSEEEECSCCTTCEEEEEEEEEETTE-EEECCCEEEE
T ss_pred             ccCCEEEEEEEEEEeCCC----C-eEEEE-------eCCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCceEee
Confidence            234569999999998754    1 21110       011238999999999999999999999999 7776665543

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.89  E-value=1.6e-21  Score=177.87  Aligned_cols=193  Identities=36%  Similarity=0.636  Sum_probs=162.2

Q ss_pred             ecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEE
Q psy7040         220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVR  299 (716)
Q Consensus       220 ~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~  299 (716)
                      .++|.+|.+ +.+.....+++.|+|++|..+++.++.+|.|+++..+...|...... .....+.+.+|.|++.|.|+|+
T Consensus         3 ~~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~L~p~t~Y~~~V~   80 (197)
T 3lpw_A            3 MDTPGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN-CHKTSWKVDQLQEGCSYYFRVL   80 (197)
T ss_dssp             CCSCCCCEE-EEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEEE-ECSSEEEECCCCTTCEEEEEEE
T ss_pred             CCCCCCCCC-cEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeecC-CCccEEEEcCCCCCCEEEEEEE
Confidence            467888887 88888999999999999877777789999999998877777665432 4578999999999999999999


Q ss_pred             EEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecC
Q psy7040         300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG  379 (716)
Q Consensus       300 a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~  379 (716)
                      |.|..|.+.++......+..   ..|.+|.++.+...+.+++.|+|.+|..++++.+.+|.|+++..+...|.....  .
T Consensus        81 a~~~~g~~~~s~~~~~~t~~---~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~  155 (197)
T 3lpw_A           81 AENEYGIGLPAETAESVKAS---ERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT--V  155 (197)
T ss_dssp             EEETTEECCCEECSSCEESC---CCCCCCSCEEEEEECSSCEEEEECCCSCCTTSCCCEEEEEEEETTCSCCEEEEE--E
T ss_pred             EEcCccccCCCCCccceecC---CCCCCCcccEEEeccCCeEEEEecCCCcCCCCcccEEEEEEEeCCCCceEEeec--c
Confidence            99999988776655444433   567889999999899999999999988777668999999999887677766543  4


Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEe
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      ...++.+.+|.+++.|.|+|+|.|..|.|.++..+..++.
T Consensus       156 ~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~~v~~  195 (197)
T 3lpw_A          156 KVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIA  195 (197)
T ss_dssp             SSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSSCEEC
T ss_pred             cccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCcccEec
Confidence            6788999999999999999999999999998877666554

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.88  E-value=9.3e-22  Score=180.88  Aligned_cols=191  Identities=21%  Similarity=0.330  Sum_probs=152.9

Q ss_pred             EEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc---CcccceEEEcCCCCCCe
Q psy7040         217 VIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET---EGPVTGLEVEGLIPNHK  293 (716)
Q Consensus       217 ~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~~~  293 (716)
                      +...++|.+|.+ +.+..... ++.|+|++|..++|.++.+|.|+++..+...|......   ......+.+.+|.|++.
T Consensus         3 l~~~~~P~~P~~-~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   80 (209)
T 2vkw_A            3 LAQADTPSSPSI-DQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETT   80 (209)
T ss_dssp             --CCCCCCCCEE-EEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCE
T ss_pred             ccccCCCcCCcc-cEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCe
Confidence            445678888887 77777666 79999999877788789999999998887888765432   13357899999999999


Q ss_pred             EEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEE
Q psy7040         294 YKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK  373 (716)
Q Consensus       294 y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~  373 (716)
                      |.|+|+|.|..|.+.++......+  .+...|.+|.++.+...+.+++.|+|.+| .+.++.+.+|.|+|+. ....|..
T Consensus        81 Y~~~V~A~n~~G~~~~s~~~~~~T--~~~~~P~~P~~~~~~~~~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~-~~~~~~~  156 (209)
T 2vkw_A           81 YAVRLAALNGKGLGEISAASEFKT--QPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRA-LSSEWKP  156 (209)
T ss_dssp             EEEEEEEEETTEECCCCCCEEEEC--CCSCSCCCCEEEEEECTTSSCEEEEEECC-CCTTSCCCEEEEEEEE-TTSCCCC
T ss_pred             EEEEEEEEcCCcccCCcccccccc--cCCCCCCCCcccccccccCCeEEEEEECc-ccCCCCCceEEEEEEC-CCCCCce
Confidence            999999999999887776653222  12226888888888888899999999998 4456689999999998 4466766


Q ss_pred             EeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCC
Q psy7040         374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP  413 (716)
Q Consensus       374 ~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~  413 (716)
                      .........++.|.+|.+++.|.|+|+|.|..|.|.++..
T Consensus       157 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~  196 (209)
T 2vkw_A          157 EIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHF  196 (209)
T ss_dssp             CEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEE
T ss_pred             eeecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchh
Confidence            5556667789999999999999999999999999887654

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.88  E-value=8.1e-21  Score=193.44  Aligned_cols=389  Identities=12%  Similarity=0.030  Sum_probs=237.9

Q ss_pred             CCCcEEEEEeCCeEEEEeeCCCCCCCcceeeEEEEEcc------------------------------------------
Q psy7040          16 EGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDR------------------------------------------   53 (716)
Q Consensus        16 ~~~l~~~~~~~~~~~~~W~~p~~~~~~~~~~y~~~~~~------------------------------------------   53 (716)
                      +.+|++.--+-.....+|+.|...+.  -..|.+-+..                                          
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (488)
T 2q7n_A            7 DKDLKCTTNNMRVWDCTWPAPLGVSP--GTVKDICIKDRFHSCHPLETTNVKIPALSPGDHEVTINYLNGFQSKFTLNEK   84 (488)
T ss_dssp             --CCCCEESSSSEEEEECCCCSSSCC--SCEEEEEEESSSEEEEECSSSEEEEECCCSSCEEEEEEESSSCEEEEEECST
T ss_pred             CccceeEecCceEEEEeeeCcCccCC--CceEEEEEecCCceeEEeccceeEcccCCCCcceEEEeeccCceeEEEEecC
Confidence            34667777777788889998865443  2233333332                                          


Q ss_pred             C----CCCCCCceEEEE-eCCeEEEEecCCCCCCCCc-cceEEEEEEcCCCC--cEEEecccC---C---CeEEecCC--
Q psy7040          54 G----LDPEGPLEVSNI-HKDGCTLKWNKPKDDGGEP-LEGYLVEKYDPETG--VWIPVGKTR---E---PEMDVTGL--  117 (716)
Q Consensus        54 ~----~~p~~~l~~~~~-~~~s~~l~W~~p~~~~~~~-i~~y~v~~~~~~~~--~~~~~~~~~---~---~~~~i~~L--  117 (716)
                      .    +.||..|.+... ....+.|+|..+...-..+ ...|.|++......  -|.......   .   ....-..+  
T Consensus        85 ~~~~~p~~p~~l~~~~~~~~~~l~~~W~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~w~s~~p  164 (488)
T 2q7n_A           85 DVSLIPETPEILDLSADFFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLP  164 (488)
T ss_dssp             TCEECCCCCCEEECCEETTTTEEEEEECBCGGGSCSSEEEEEEEECCCSSSSCSCCCEECCEECSSSCBCCEEEEECSSC
T ss_pred             ccccCCCCCeeEEEEEecCCCeEEEEEeCCCccccccCCeEEEEEEEEeccceEEEEEEEEEEecCCCceeEeeccCCCc
Confidence            1    233333444544 4679999998764210111 24588876443321  132211110   0   11122222  


Q ss_pred             CCCcEEEEEEEEEe----cCc---cCCCccccceEEe------cCCCCcc--cccccccceecccCCC------CCCceE
Q psy7040         118 TPGHEYKFRVKALN----KEG---ESEPLETFSSIIA------RDPYSKY--TSVSSLDSHKRSNQPC------GSGMVR  176 (716)
Q Consensus       118 ~~~~~y~~~v~a~~----~~g---~~~~s~~~~~~~~------~~p~~~~--~~~~~~~~~~~~~~p~------G~~~~~  176 (716)
                      ..+..|.++||+..    -.|   +|.+|........      ..|....  .+....+.|.+. .+.      |..-..
T Consensus       165 l~c~~~~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~~~t~i~v~P~~~~v~~Gs~vtl~C~a~-~~~I~W~~ng~~i~~  243 (488)
T 2q7n_A          165 LQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSP-TKVLSGQIGNTLRPL  243 (488)
T ss_dssp             CSSSCCEEEEEEEECCTTCCSCBCCCCCCCCEECCCCCCSSCCEECTTCEEESSCCCEEEECCS-SCEEEEEETTEECCC
T ss_pred             ccccceEEEEEEEeccccccCCCCCcCCCChhhcCCcCCCceEECCCCCEEcCCCCEEEEEECC-CCEEEEEECCEECch
Confidence            33889999999985    223   5555544332110      1111111  122233456665 221      311000


Q ss_pred             EEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCC--CCCc
Q psy7040         177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDD--GGQP  254 (716)
Q Consensus       177 ~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~--~~~~  254 (716)
                      . ...+....|+|.++...|+|.|.|.+.+  +.....+.+.+..+|.+|.+ +.+.......++++|.++...  +|.+
T Consensus       244 ~-ri~~~~~~L~I~nl~~sd~g~y~~~C~~--~~~i~~~~l~v~~pP~~P~n-l~C~~~~~~svtcsW~pg~~~~l~G~~  319 (488)
T 2q7n_A          244 I-HLYGQTVAIHILNIPVSENSGTNIIFIT--DDDVYGTVVFAGYPPDVPQK-LSCETHDLKEIICSWNPGRITGLVGPR  319 (488)
T ss_dssp             E-ECSSSCEEEECCSCCCCCSSCEEEEEEE--SSCEEEEEEEEECCCCCCCS-CEEEBSSSSEEEEEECCCSCCCCCTTS
T ss_pred             h-hccceEEEEEEeCCCcccCCcEEEEEEc--CCeEEEEEEEeeCCCCCCcc-cEEEEcCCCEEEEEEeCCCcCCCCCCC
Confidence            0 1345678899999999999888887773  33345788889999999998 788777889999999987654  3457


Q ss_pred             cceEEEEEEeCCCC-CeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEE
Q psy7040         255 IEKYVVDKMDEATG-RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEI  333 (716)
Q Consensus       255 ~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~  333 (716)
                      ...|.+.+...+.. .|..+....+....+.+..+...+.|.|+|.|.|..|... + .  ..........|.+|.++.+
T Consensus       320 ~t~Y~L~y~~~g~~~~c~~~~~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~-S-~--~~~~~~~~v~P~PP~nl~v  395 (488)
T 2q7n_A          320 NTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-S-A--VVINVTERVAPHDPTSLKV  395 (488)
T ss_dssp             SCEEEEEETTTCCEEEEECSSCCCSSCEEEEEECCSSCCCCEEEEEEEETTEEEE-E-E--EECCGGGTBCCCCCEEEEE
T ss_pred             ceeEEEEEEECCCCCCCccccccCCceEEEEEcCCCCccEEEEEEEEEeCCCCcc-c-e--EEEEecCCCCCCCCeEEEE
Confidence            88999998654322 2332222113345677765555699999999999998743 2 1  1111122356889999999


Q ss_pred             EeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEe-eecCCCCeE--EecCCCCCCeEEEEEEEEeCCCCCCC
Q psy7040         334 KDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCA-QTEGDTPKG--KVLDLIEGNQYEFRVLAVNKGGPGEP  410 (716)
Q Consensus       334 ~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~~--~i~~l~~~~~Y~~~v~a~n~~g~~~~  410 (716)
                      .....+.+.|+|.+|...+ +.+..|+|+|+..+...|.... ........+  .+.+|.|++.|.|+|+|.+ .|.|.+
T Consensus       396 ~~~s~~sl~LsW~pP~~~~-g~~l~YeV~Yr~~~~~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~W  473 (488)
T 2q7n_A          396 KDINSTVVTFSWYLPGNFT-KINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKW  473 (488)
T ss_dssp             EECSTTCEEEEEEEEEECS-SSEEEEEEEEBCTTSCCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSC
T ss_pred             EecCCCEEEEEEeCCCCCC-CcceEEEEEEEECCCCCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCC
Confidence            8888999999999976543 4688999999988766664322 222123345  9999999999999999999 888655


Q ss_pred             CCCCCce
Q psy7040         411 SDPTAPH  417 (716)
Q Consensus       411 s~~~~~~  417 (716)
                      |+.+...
T Consensus       474 S~WS~~v  480 (488)
T 2q7n_A          474 SRWSDEK  480 (488)
T ss_dssp             CCCCCCC
T ss_pred             CCCcCCE
Confidence            5555433

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.88  E-value=2.7e-21  Score=189.96  Aligned_cols=235  Identities=11%  Similarity=0.082  Sum_probs=171.2

Q ss_pred             cEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEe-CCeEEEEEECCCCCCCCccceEEEEEE
Q psy7040         185 TKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVH-AEGVTLDWKVPDDDGGQPIEKYVVDKM  263 (716)
Q Consensus       185 ~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~-~~~~~l~W~~p~~~~~~~~~~y~v~~~  263 (716)
                      ..|+|.++...|+|.|+|.+.+..+.....+.|.+..+|.+|.+ +.+.... .++++++|.++.+ ++. ...|.|+++
T Consensus        61 ~~L~i~~~~~~d~g~y~c~~~~~~~~~~~~~~l~v~~~P~~P~~-l~c~~~~~~~~~~~~W~~~~~-~~~-~~~Y~l~~~  137 (313)
T 2d9q_B           61 SIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHN-LSCLMNLTTSSLICQWEPGPE-THL-PTSFTLKSF  137 (313)
T ss_dssp             EEEEESCCCSSEEEEEEEEESSSSEEEEEEEEEEECCCCCCCEE-EEEEEETTTTEEEEEEECCSC-CSS-CCEEEEEEE
T ss_pred             EEEEEeccCCCccceEEeeecCCCceeEEEEEEccCCCCCCCcc-ceeeECCCCccEEEEecCCCC-CCC-ceeEEEEEE
Confidence            68999999999999999999765444456678888899999987 7777663 6899999997665 343 457999987


Q ss_pred             eCCC------CCeEEccccCcccceEEE--cCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEe
Q psy7040         264 DEAT------GRWTPAGETEGPVTGLEV--EGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKD  335 (716)
Q Consensus       264 ~~~~------~~~~~~~~~~~~~~~~~i--~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~  335 (716)
                      ....      ..|..+... .....+.+  .+|.+++.|.|+|.|.|..|.+.... .  .........|.+|.++.+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~-~--~~~~~~~~~p~pP~~~~~~~  213 (313)
T 2d9q_B          138 KSRGNCQTQGDSILDCVPK-DGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ-L--CLDPMDVVKLEPPMLRTMDP  213 (313)
T ss_dssp             ECCTTSCSCCCCEEEECCC-TTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCC-E--EECGGGGEECCCCEEEECCC
T ss_pred             ecCCCcccCCcccccCCCC-CCCcEEEECccccccceeEEEEEEEECCCCCccCcc-E--EEehhheeccCcCceeEEEE
Confidence            6532      345554432 12344555  56999999999999999999753222 1  11111223578888887765


Q ss_pred             e------eCCeEEEEecCCCCCCCccceEEEEEEe-ecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040         336 F------DTDFVELAWTPPEQNGGSPIVGYIIEKK-EKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  408 (716)
Q Consensus       336 ~------~~~~i~l~W~~p~~~~~~~i~~y~v~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~  408 (716)
                      .      ..+++.|+|.+|.. ++..+.+|+|+|+ ..+...|............+.|.+|.+++.|.|+|+|.|..|.|
T Consensus       214 ~~~~~~~~~~~l~l~W~~p~~-~~~~~l~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G  292 (313)
T 2d9q_B          214 SPEAAPPQAGCLQLSWEPWQP-GLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPG  292 (313)
T ss_dssp             -------CCSCEEEEEECCGG-GTTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCC
T ss_pred             ecccccCCCCeEEEEECCCCC-CCceeEEEEEEEccCCCCCCcEEcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCC
Confidence            5      46889999999764 3434679999999 66667888765445556789999999999999999999999999


Q ss_pred             CCCCCCCceEeecCCCCCc
Q psy7040         409 EPSDPTAPHIARAKKVSPY  427 (716)
Q Consensus       409 ~~s~~~~~~~~~~~~~~P~  427 (716)
                      .+|+.+......+...+|.
T Consensus       293 ~wS~wS~~~~~~T~~~~P~  311 (313)
T 2d9q_B          293 HWSDWSPSLELRTTERAAA  311 (313)
T ss_dssp             CCCCCCCCEEECCCC----
T ss_pred             ccCCCCCccceeCCccCCC
Confidence            8888887777666555553

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.87  E-value=7.6e-20  Score=179.46  Aligned_cols=282  Identities=14%  Similarity=0.111  Sum_probs=184.9

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEe-cC
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN-KE  133 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~-~~  133 (716)
                      ++||.+|.+......++.|+|++|.......+.+|++.+......   .+   ....+.+.+|.+++.|.|+|+|.. ..
T Consensus         4 ~~pP~nl~~~~~~~~~v~l~W~pP~~~~~~~~~~Y~v~~~~~~~~---~~---~~~~~~~~~~~~~~~y~~~V~a~~~~~   77 (314)
T 3bpo_C            4 QPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDK---KI---APETRRSIEVPLNERICLQVGSQCSTN   77 (314)
T ss_dssp             CCCCEEEEEEEETTTEEEEEEECCSSCCCSSCCCEEECCC--CCC---EE---ESSSEEEEECCCSSCEEEEEEECC---
T ss_pred             CCCCcceEEEeCCceEEEEEEcCCCCCCCCceEEEEEEecccCce---Ee---ccccEEEEEEcCCCcEEEEEEEEecCC
Confidence            468888999888899999999998765333477899987542111   11   124567788999999999999964 44


Q ss_pred             ccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCcee
Q psy7040         134 GESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSV  213 (716)
Q Consensus       134 g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  213 (716)
                      |.+.++........ .+                                                               
T Consensus        78 ~~g~~s~~~~~~~~-~~---------------------------------------------------------------   93 (314)
T 3bpo_C           78 ESEKPSILVEKCIS-PP---------------------------------------------------------------   93 (314)
T ss_dssp             ------CCEEEEEC-CC---------------------------------------------------------------
T ss_pred             CCCCCCcCeeeeee-cC---------------------------------------------------------------
Confidence            44444433221110 00                                                               


Q ss_pred             EEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc--CcccceEEEcCCC--
Q psy7040         214 EVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET--EGPVTGLEVEGLI--  289 (716)
Q Consensus       214 ~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~--  289 (716)
                           ...+|.+|.+ +.+.......+.++|.++... + ....|.|.+...+...+..|...  .+....+.+..+.  
T Consensus        94 -----~~~pp~~P~~-l~c~~~~~~~~~c~W~~~~~~-~-~~~~Y~l~y~~~~~~~~~~C~~~~~~~~~~~c~~~~~~~~  165 (314)
T 3bpo_C           94 -----EGDPESAVTE-LQCIWHNLSYMKCSWLPGRNT-S-PDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVK  165 (314)
T ss_dssp             -----CC-CCSSCEE-EEEEEETTTEEEEEEECCC-----CCCCEEEEEEESSCSSCEECCCEEEETTEEEEEEECCC--
T ss_pred             -----CCCCCCCCEe-ceEEECCCCeEEEEECCCCCC-C-CCccEEEEEEeCCCCccccCcCeecCCCeEEEEECCCCcc
Confidence                 0135667777 788877889999999987654 3 37899999876655566666432  1234667777776  


Q ss_pred             --CCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC
Q psy7040         290 --PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY  367 (716)
Q Consensus       290 --p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~  367 (716)
                        ..+.|.|+|.|.|..|.+..+..   .........|.+|.++.+. ...+.+.|+|.+|...+ ..+..|.|+|+..+
T Consensus       166 ~~~~~~y~~~V~a~n~~G~~~~~~~---~~~~~~~v~P~pP~~l~~~-~~~~~l~lsW~~P~~~~-~~~l~Yev~y~~~~  240 (314)
T 3bpo_C          166 DSSFEQHSVQIMVKDNAGKIKPSFN---IVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQNFI-SRCLFYEVEVNNSQ  240 (314)
T ss_dssp             ------CCEEEEEEETTSCSCCEEE---EECSSSSEECCCCEEEEEE-EETTEEEEEEECCTTCC-GGGEEEEEEEEC--
T ss_pred             ccceeEEEEEEEEEcCCCceecccE---EEehhheEeeCCCCEEEEE-EcCCcEEEEEeCCCccC-CceEEEEEEEEECC
Confidence              37899999999999887643321   1111223468899999987 78889999999986433 24689999999887


Q ss_pred             CCceEEEee------------ecCCCCeEEecCCCCCCeEEEEEEEEeCC----CCCCCCCCCCceEe
Q psy7040         368 SPIWEKCAQ------------TEGDTPKGKVLDLIEGNQYEFRVLAVNKG----GPGEPSDPTAPHIA  419 (716)
Q Consensus       368 ~~~~~~~~~------------~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~----g~~~~s~~~~~~~~  419 (716)
                      ...|.....            .......+.|.+|.+++.|.|+|+|.+..    +.|.+|+.+.....
T Consensus       241 ~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qVra~~~~~~~~~~g~WS~WS~~~~~  308 (314)
T 3bpo_C          241 TETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSI  308 (314)
T ss_dssp             CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEEEEEECTTTSCCCCCCCCCCCCEEE
T ss_pred             CCcceEEecccccccccccccccCCceEEEEccCCCCCEEEEEEEeeecccccCCCCeeCCCCCCeEe
Confidence            677764322            12355789999999999999999999863    35556666655443

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.87  E-value=2.7e-20  Score=169.69  Aligned_cols=187  Identities=33%  Similarity=0.601  Sum_probs=153.5

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc-cCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK-TREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      .||..|.+...+.+++.|+|++|..+++.++.+|.|+++..+...|..... ...+++.|.+|.+++.|.|+|+|.|..|
T Consensus         7 ~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g   86 (197)
T 3lpw_A            7 GPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYG   86 (197)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEEEECSSEEEECCCCTTCEEEEEEEEEETTE
T ss_pred             CCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeecCCCccEEEEcCCCCCCEEEEEEEEEcCcc
Confidence            344557778899999999999997677778999999999888777866543 3458999999999999999999999999


Q ss_pred             cCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeE
Q psy7040         135 ESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVE  214 (716)
Q Consensus       135 ~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  214 (716)
                      .+.++......+.                                                                   
T Consensus        87 ~~~~s~~~~~~t~-------------------------------------------------------------------   99 (197)
T 3lpw_A           87 IGLPAETAESVKA-------------------------------------------------------------------   99 (197)
T ss_dssp             ECCCEECSSCEES-------------------------------------------------------------------
T ss_pred             ccCCCCCccceec-------------------------------------------------------------------
Confidence            8877655443332                                                                   


Q ss_pred             EEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeE
Q psy7040         215 VEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKY  294 (716)
Q Consensus       215 ~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y  294 (716)
                           ..+|.+|.+ +.+.....+++.|+|.+|..+++.++.+|.|++...+...|.....  .....+.+.+|.+++.|
T Consensus       100 -----~~~p~~p~~-~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~~~L~p~t~Y  171 (197)
T 3lpw_A          100 -----SERPLPPGK-ITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT--VKVTEATITGLIQGEEY  171 (197)
T ss_dssp             -----CCCCCCCSC-EEEEEECSSCEEEEECCCSCCTTSCCCEEEEEEEETTCSCCEEEEE--ESSSEEEECCCCTTCEE
T ss_pred             -----CCCCCCCcc-cEEEeccCCeEEEEecCCCcCCCCcccEEEEEEEeCCCCceEEeec--ccccEEEeCCcCCCCEE
Confidence                 135677777 8888888999999999988777668999999999887777776554  35788999999999999


Q ss_pred             EEEEEEEcCCCCCCCCcccceEE
Q psy7040         295 KFRVRAVNKQGKSEPLTTTASIE  317 (716)
Q Consensus       295 ~~~v~a~n~~g~~~~~~~~~~~~  317 (716)
                      .|+|+|.|..|.+.++..+..++
T Consensus       172 ~~~V~A~n~~G~s~~S~~s~~v~  194 (197)
T 3lpw_A          172 SFRVSAQNEKGISDPRQLSVPVI  194 (197)
T ss_dssp             EEEEEEEETTEECCCEECSSCEE
T ss_pred             EEEEEEEeCCccCCCccCcccEe
Confidence            99999999999988877765554

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.87  E-value=7.5e-21  Score=184.60  Aligned_cols=273  Identities=15%  Similarity=0.168  Sum_probs=171.6

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEec---ccCCCeEEec--CCCCCcEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG---KTREPEMDVT--GLTPGHEYKFRVK  128 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~---~~~~~~~~i~--~L~~~~~y~~~v~  128 (716)
                      .++||.++++... ...+.|+|++|... ..++. |.|+|+..+...|....   ....+.+.|.  +|.++..|.|||+
T Consensus         3 ~l~~P~nv~~~~~-n~~~iL~W~pp~~~-~~~v~-Y~V~y~~~~~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV~   79 (306)
T 3s98_A            3 PLKSPQKVEVDII-DDNFILRWNRSDES-VGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIR   79 (306)
T ss_dssp             -----CCCEEEEE-TTEEEEECC---------CE-EEEEEEESSCSSCEECTTCSSBSSSEEECCC---CTTSCEEEEEE
T ss_pred             CCCCCcEeEEEEE-CCeEEEEEcCCCCC-CCCeE-EEEEEEECCCCCcEECCCccCCCCCEEEccccccCCCCcEEEEEE
Confidence            3577888888876 45678999998743 34565 99999988888897642   3334566665  4689999999999


Q ss_pred             EEecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCC
Q psy7040         129 ALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENIN  208 (716)
Q Consensus       129 a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  208 (716)
                      |.| .|.|.++......+..                                                            
T Consensus        80 A~n-~~~S~~s~~~~f~~~~------------------------------------------------------------   98 (306)
T 3s98_A           80 AEK-ENTSSWYEVDSFTPFR------------------------------------------------------------   98 (306)
T ss_dssp             EEC-SSCEEEEECCCBCHHH------------------------------------------------------------
T ss_pred             EEe-CCcCCCEeeeeEechh------------------------------------------------------------
Confidence            999 7766554332211110                                                            


Q ss_pred             CCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCC-----CCccceEEEEEEeCCCCC-eEEccccCcccce
Q psy7040         209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDG-----GQPIEKYVVDKMDEATGR-WTPAGETEGPVTG  282 (716)
Q Consensus       209 g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~-----~~~~~~y~v~~~~~~~~~-~~~~~~~~~~~~~  282 (716)
                                 ..++.||.  +.+.. ..+++.|+|.+|...+     ...+..|.|.+...+... |...    .....
T Consensus        99 -----------~~~~~pP~--v~~~~-~~~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~~~~~~~~~~~----~~~~~  160 (306)
T 3s98_A           99 -----------KAQIGPPE--VHLEA-EDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIE----NIYSR  160 (306)
T ss_dssp             -----------HCBCCCCE--EEEEE-CSSCEEEEEECC---CCCC-----CCEEEEEEEETTTCCCEEEE----EECTE
T ss_pred             -----------hCccCCCe--EEEEE-cCCEEEEEEECCCCCCcceeccCCcEEEEEEEEECCCCCeEEEe----cccce
Confidence                       01344553  56554 3468999999654321     125789999887665443 4421    34588


Q ss_pred             EEEcCCCCCCeEEEEEEEEc--CCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEE
Q psy7040         283 LEVEGLIPNHKYKFRVRAVN--KQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYI  360 (716)
Q Consensus       283 ~~i~~L~p~~~y~~~v~a~n--~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~  360 (716)
                      +.|.+|.|++.|.|+|+|.+  ..|.|..+......+.  ...++.+|.++.+.. .++++.|+|.+|.. +    ..|.
T Consensus       161 ~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~--~~~p~~~P~~v~~~~-~~~s~~l~W~~p~~-~----~~~~  232 (306)
T 3s98_A          161 HKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTT--VENELPPPENIEVSV-QNQNYVLKWDYTYA-N----MTFQ  232 (306)
T ss_dssp             EEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECC--SCCSSCCCEEEEEEE-ETTEEEEEEECSSS-S----CEEE
T ss_pred             EEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEec--CCCcCCCCceEEEEE-ecCEEEEEeCCCCC-c----EEEE
Confidence            99999999999999999999  5677776666433332  222345788888865 45789999998652 2    2455


Q ss_pred             EEEee--------cCCCceEEE-eeecCCCCeEEecC-CCCCCeEEEEEEEEeCCCCCCCCCCCCc
Q psy7040         361 IEKKE--------KYSPIWEKC-AQTEGDTPKGKVLD-LIEGNQYEFRVLAVNKGGPGEPSDPTAP  416 (716)
Q Consensus       361 v~~~~--------~~~~~~~~~-~~~~~~~~~~~i~~-l~~~~~Y~~~v~a~n~~g~~~~s~~~~~  416 (716)
                      +.+..        .++..|... .........+.+.+ |.+...|.|||+|.|..|.|.+++...+
T Consensus       233 v~~~~gy~~~~~~~~~~~W~~~~~c~~~~~~~c~~~~~~~~~~~Y~~RV~A~n~~~~s~~s~~~~~  298 (306)
T 3s98_A          233 VQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKF  298 (306)
T ss_dssp             EEEEEGGGGSCC----CCCEECGGGTTBSSSEEEEEGGGSCSSEEEEEEEEECSSCBCCCCCCEEE
T ss_pred             EEEehhhhhccccccccCceECCCceeCCCccccCchhhcccCCEEEEEEEccCCCcccccccccc
Confidence            55442        235668754 22234667788887 3455699999999999998888875443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.87  E-value=1.3e-20  Score=197.59  Aligned_cols=409  Identities=11%  Similarity=0.005  Sum_probs=225.3

Q ss_pred             eEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeC---CCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy7040         230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDE---ATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK  306 (716)
Q Consensus       230 ~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~---~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~  306 (716)
                      +.+....+++++|.|...    +.+...|.+.+...   ......   .......++.|.++...+.+.|+|.|.|..|.
T Consensus        56 ~~~~v~~g~~~~L~c~~~----~~~~~~~~W~~~~~~l~~~~~~~---~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~  128 (527)
T 3qs9_E           56 AAVEVDVSASITLQVLVD----APGNISCLWVFKHSSLNCQPHFD---LQNRGVVSMVILKMTETQAGEYLLFIQSEATN  128 (527)
T ss_dssp             CEEEECSSCCEEEEEECS----CCSSCEEEEEETTEEECCCCBC--------CEEEEEESSCCSSSCSEEEEEEEC--CE
T ss_pred             eeEEEeccccEEEEEEEe----cCCceeEEEEecCCccCcccccC---CCcceEEEEEECcCChhhCeeEEEEEEecccc
Confidence            355666789999999962    33445565544211   001111   11122356999999999999999999997664


Q ss_pred             CCCCcccceEEecC-CCCCCC--------CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeee
Q psy7040         307 SEPLTTTASIEAKN-PFNQPG--------KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT  377 (716)
Q Consensus       307 ~~~~~~~~~~~~~~-~~~~p~--------~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~  377 (716)
                      ...   ...+.+.. ....+.        ....+.+...+.....+.|...    +..+..+.    .           .
T Consensus       129 ~~~---~~~v~v~~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~----~~~~~~~~----~-----------~  186 (527)
T 3qs9_E          129 YTI---LFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLC----DSQGESCK----E-----------E  186 (527)
T ss_dssp             EEE---EEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-----------------------------
T ss_pred             EEE---EEEEEECCceeeccCCCcEEecCCceEEEEEEceecCCeEEEEEC----CCCCcccc----c-----------c
Confidence            311   10111110 000000        0112333333334444555431    11111110    0           0


Q ss_pred             cCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEe-ccCCC
Q psy7040         378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIP  456 (716)
Q Consensus       378 ~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~-~~p~~  456 (716)
                      ...........+.+.+...|+|.|.|..|.....  .....   ...+|.+   .+....+..|+.+.|.|.+. +.|.+
T Consensus       187 ~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~--~~~l~---V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p  258 (527)
T 3qs9_E          187 SPAVVKKEEKVLHELFGTDIRCCARNELGRECTR--LFTID---LNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGF  258 (527)
T ss_dssp             ---CEEECCSEECCCCSSCEEEEEECSSCEEEEE--CEEEE---SSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCC
T ss_pred             CCcEEEEeeeeccccCCEEEEEEEEeCCCcccce--EEEEE---EeccCcc---CCCceEEeCCCeEEEEEEEccCCCCe
Confidence            0000011112233556678999999998864321  01111   1123332   23467899999999999996 99999


Q ss_pred             eEEEEeCCeEeccCCcEEEEe--C----CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE-EEEEEEeCC---
Q psy7040         457 TKEWLCNDITIISKDRFKIVN--D----DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-GCSLKWNPP---  526 (716)
Q Consensus       457 ~~~W~~~~~~~~~~~~~~~~~--~----~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-~v~l~W~~p---  526 (716)
                      .+.|++++..+.....+....  .    .....|.|.++...|.|.|+|.|.|.   ...++.+.+. ...+...+.   
T Consensus       259 ~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~  335 (527)
T 3qs9_E          259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSED  335 (527)
T ss_dssp             CEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCE
T ss_pred             EEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCccc
Confidence            999999998775543332211  1    12346999999999999999999998   4555555554 111222111   


Q ss_pred             --CCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecc-ccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee
Q psy7040         527 --EDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN-VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  603 (716)
Q Consensus       527 --~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~  603 (716)
                        ...+......|.+...+.    |.+.|++.+........ ......+.|.++...+.+.|+|.|.|..|....+..+.
T Consensus       336 ~~v~~G~~v~L~C~~~g~P~----p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~  411 (527)
T 3qs9_E          336 YEIDQYEEFCFSVRFKAYPQ----IRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN  411 (527)
T ss_dssp             ECCCTTCCCCEEEEEEEESC----CEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC
T ss_pred             EEEcCCCeEEEEEEEEecCC----CEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEE
Confidence              122233344555555444    44999998876543221 12346788999999999999999999999777666666


Q ss_pred             ccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeec-----------------ccce
Q psy7040         604 VTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTID-----------------NVDY  662 (716)
Q Consensus       604 v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~-----------------~~~~  662 (716)
                      |..+|.    +..... ..              .+.|.+.|    .+.|++++......                 ....
T Consensus       412 V~~~P~----i~~~~~-~~--------------~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (527)
T 3qs9_E          412 IRRKPQ----VLAEAS-AS--------------QASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQW  472 (527)
T ss_dssp             --CCCE----EEECCC-CE-----------------EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------C
T ss_pred             EecCCe----EEEeCC-CC--------------EEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCce
Confidence            777664    221111 11              26777777    89999875433110                 0011


Q ss_pred             eeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      .....|.-...+|.|.|+|.|.|..|....++.|.|..+
T Consensus       473 ~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p  511 (527)
T 3qs9_E          473 VSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP  511 (527)
T ss_dssp             EEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC-----
T ss_pred             EEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCC
Confidence            122333333356999999999999999999998876553

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.87  E-value=1.4e-20  Score=172.40  Aligned_cols=187  Identities=22%  Similarity=0.356  Sum_probs=145.9

Q ss_pred             EecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCC-CCCeEEcc-ccCcccceEEEcCCCCCCeEEE
Q psy7040         219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA-TGRWTPAG-ETEGPVTGLEVEGLIPNHKYKF  296 (716)
Q Consensus       219 v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~-~~~~~~~~-~~~~~~~~~~i~~L~p~~~y~~  296 (716)
                      |.++|.+|.+ +.+.. ..+++.|+|++|. +++.++.+|.|+++... ...|.... ........+.+ +|.|++.|.|
T Consensus         2 v~~~P~~P~~-~~~~~-~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~   77 (205)
T 1cfb_A            2 VQDVPNAPKL-TGITC-QADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTF   77 (205)
T ss_dssp             CCCCCCCCEE-EEEEE-CSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEE
T ss_pred             cccCCCCCCC-cEEEe-cCCEEEEEEECcc-cCCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEE
Confidence            4578999988 78888 9999999999875 45568999999998654 35675432 22244567777 9999999999


Q ss_pred             EEEEEcCCCCCCCCcccceEEecCCCCCC-CCCCCcEEEeeeCCeEEEEecCCCC-CCCccceEEEEEEeecCCCc-eEE
Q psy7040         297 RVRAVNKQGKSEPLTTTASIEAKNPFNQP-GKPGTPEIKDFDTDFVELAWTPPEQ-NGGSPIVGYIIEKKEKYSPI-WEK  373 (716)
Q Consensus       297 ~v~a~n~~g~~~~~~~~~~~~~~~~~~~p-~~p~~~~~~~~~~~~i~l~W~~p~~-~~~~~i~~y~v~~~~~~~~~-~~~  373 (716)
                      +|.|.|..|.+.++.....+.  +....| .+|.++.+.....+++.|+|.+|.. +.++.+.+|.|+|+..+... |..
T Consensus        78 ~V~A~n~~G~~~~s~~~~~~~--T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~  155 (205)
T 1cfb_A           78 RVIAFNKIGASPPSAHSDSCT--TQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWEN  155 (205)
T ss_dssp             EEEEEETTEECCCCCCCCCEE--ECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEE
T ss_pred             EEEEEECCccCCCCCCceeEE--cCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCCCcEE
Confidence            999999999888774322222  222344 5788999999999999999999762 33457999999999876544 766


Q ss_pred             EeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCC
Q psy7040         374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  411 (716)
Q Consensus       374 ~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s  411 (716)
                      .........++.|.+|.+++.|.|+|+|.|..|.|..+
T Consensus       156 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s  193 (205)
T 1cfb_A          156 NNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVA  193 (205)
T ss_dssp             EEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSC
T ss_pred             EEecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCC
Confidence            66555567899999999999999999999999999853

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.86  E-value=2.4e-20  Score=172.33  Aligned_cols=193  Identities=23%  Similarity=0.352  Sum_probs=152.9

Q ss_pred             CCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCC-CCeEEcccc-----------CcccceEEEcCCCC
Q psy7040         223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT-GRWTPAGET-----------EGPVTGLEVEGLIP  290 (716)
Q Consensus       223 p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~-----------~~~~~~~~i~~L~p  290 (716)
                      +.+|.+ +.+.....+++.|+|++|...++ ++.+|.|+++..+. ..|..+...           ......+.+.+|.|
T Consensus         2 ~~pP~~-~~~~~~~~~sv~l~W~~p~~~~~-~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p   79 (214)
T 2ibg_A            2 TYPPTP-PNVTRLSDESVMLRWMVPRNDGL-PIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKP   79 (214)
T ss_dssp             CCCCCC-CEEEEEETTEEEEEEEEECCSSC-CEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCT
T ss_pred             CCCCCC-CEeeEecCCEEEEEEECCCCCCC-CceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcC
Confidence            456666 57788899999999998876554 79999999988644 678766531           13567899999999


Q ss_pred             CCeEEEEEEEEcCCCCCCCCcccceEEecC--CCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC
Q psy7040         291 NHKYKFRVRAVNKQGKSEPLTTTASIEAKN--PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS  368 (716)
Q Consensus       291 ~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~--~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~  368 (716)
                      ++.|.|+|.|.|..|.+..+..+..+....  +..+|.+|.++.+...+.+++.|+|.+|..+.++.+.+|.|+++..+.
T Consensus        80 ~t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~  159 (214)
T 2ibg_A           80 QHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSS  159 (214)
T ss_dssp             TCEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTC
T ss_pred             CCEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCCccCCCCcceEEEEEEECCC
Confidence            999999999999999877766444333322  333556788888888899999999999864456689999999998775


Q ss_pred             -CceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCce
Q psy7040         369 -PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH  417 (716)
Q Consensus       369 -~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~  417 (716)
                       ..|...........++.|.+|.+++.|.|+|+|.|..|.|.+|......
T Consensus       160 ~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~  209 (214)
T 2ibg_A          160 AGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGR  209 (214)
T ss_dssp             CSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEE
T ss_pred             CcceEEeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeE
Confidence             6787766655567899999999999999999999999999888765433

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.86  E-value=1.3e-18  Score=177.15  Aligned_cols=430  Identities=12%  Similarity=0.026  Sum_probs=262.0

Q ss_pred             CCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCC
Q psy7040         226 PGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG  305 (716)
Q Consensus       226 p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g  305 (716)
                      |.+ ++.....-.....+|++|...+  .-..|.+......    ..+..  ...+.+.|..|.+++ +.+.+...... 
T Consensus         7 ~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~-   75 (488)
T 2q7n_A            7 DKD-LKCTTNNMRVWDCTWPAPLGVS--PGTVKDICIKDRF----HSCHP--LETTNVKIPALSPGD-HEVTINYLNGF-   75 (488)
T ss_dssp             --C-CCCEESSSSEEEEECCCCSSSC--CSCEEEEEEESSS----EEEEE--CSSSEEEEECCCSSC-EEEEEEESSSC-
T ss_pred             Ccc-ceeEecCceEEEEeeeCcCccC--CCceEEEEEecCC----ceeEE--eccceeEcccCCCCc-ceEEEeeccCc-
Confidence            444 4555555667889999876533  3456777654322    22332  236799999999999 47777633321 


Q ss_pred             CCCCCcccceEEe-cCCCCCCCCCCCcEEEee-eCCeEEEEecCCCCC-CCccceEEEEEEeecCC--CceEEEeeecC-
Q psy7040         306 KSEPLTTTASIEA-KNPFNQPGKPGTPEIKDF-DTDFVELAWTPPEQN-GGSPIVGYIIEKKEKYS--PIWEKCAQTEG-  379 (716)
Q Consensus       306 ~~~~~~~~~~~~~-~~~~~~p~~p~~~~~~~~-~~~~i~l~W~~p~~~-~~~~i~~y~v~~~~~~~--~~~~~~~~~~~-  379 (716)
                            ....+.- +.-...|.+|.++.+... ....+.|+|..+... ....-..|.|++.....  ..|........ 
T Consensus        76 ------~~~~~~~~~~~~~~p~~p~~l~~~~~~~~~~l~~~W~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~  149 (488)
T 2q7n_A           76 ------QSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLS  149 (488)
T ss_dssp             ------EEEEEECSTTCEECCCCCCEEECCEETTTTEEEEEECBCGGGSCSSEEEEEEEECCCSSSSCSCCCEECCEECS
T ss_pred             ------eeEEEEecCccccCCCCCeeEEEEEecCCCeEEEEEeCCCccccccCCeEEEEEEEEeccceEEEEEEEEEEec
Confidence                  1111111 122234888998877765 468899999875432 11112468877644321  22333221111 


Q ss_pred             ---CCCeEEecCC--CCCCeEEEEEEEEe----CCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEE
Q psy7040         380 ---DTPKGKVLDL--IEGNQYEFRVLAVN----KGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV  450 (716)
Q Consensus       380 ---~~~~~~i~~l--~~~~~Y~~~v~a~n----~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v  450 (716)
                         ......-..+  ..+..|.++||+..    ..|.+.+|+.+........  .|......+.+..+..|+.+.|.|.+
T Consensus       150 ~~~~~~~w~w~s~~pl~c~~~~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~--~~t~i~v~P~~~~v~~Gs~vtl~C~a  227 (488)
T 2q7n_A          150 GKDTVQHWNWTSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWI--RNTETNVFPQDKVVLAGSNMTICCMS  227 (488)
T ss_dssp             SSCBCCEEEEECSSCCSSSCCEEEEEEEECCTTCCSCBCCCCCCCCEECCCC--CCSSCCEECTTCEEESSCCCEEEECC
T ss_pred             CCCceeEeeccCCCcccccceEEEEEEEeccccccCCCCCcCCCChhhcCCc--CCCceEECCCCCEEcCCCCEEEEEEC
Confidence               1122222222  23779999999997    4566677777766655322  11111123445668999999999988


Q ss_pred             eccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE-------------
Q psy7040         451 IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-------------  517 (716)
Q Consensus       451 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-------------  517 (716)
                      .   .+.+.|++++..+...     ...+....|.|.++...+.|.|.|.+.+ .+. ...+.+.+.             
T Consensus       228 ~---~~~I~W~~ng~~i~~~-----ri~~~~~~L~I~nl~~sd~g~y~~~C~~-~~~-i~~~~l~v~~pP~~P~nl~C~~  297 (488)
T 2q7n_A          228 P---TKVLSGQIGNTLRPLI-----HLYGQTVAIHILNIPVSENSGTNIIFIT-DDD-VYGTVVFAGYPPDVPQKLSCET  297 (488)
T ss_dssp             S---SCEEEEEETTEECCCE-----ECSSSCEEEECCSCCCCCSSCEEEEEEE-SSC-EEEEEEEEECCCCCCCSCEEEB
T ss_pred             C---CCEEEEEECCEECchh-----hccceEEEEEEeCCCcccCCcEEEEEEc-CCe-EEEEEEEeeCCCCCCcccEEEE
Confidence            7   4689999999876432     2345567899999999888888887763 222 224444433             


Q ss_pred             ----EEEEEEeCCCCC--CCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEc
Q psy7040         518 ----GCSLKWNPPEDD--GGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN  591 (716)
Q Consensus       518 ----~v~l~W~~p~~~--~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n  591 (716)
                          .+.++|.++.+.  +|..+..|.|++...+.   ...|......      ......+.+..+...+.|.|+|.|.|
T Consensus       298 ~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~---~~~c~~~~~~------~~~~~~ct~~l~~~~t~Y~f~V~A~N  368 (488)
T 2q7n_A          298 HDLKEIICSWNPGRITGLVGPRNTEYTLFESISGK---SAVFHRIEGL------TNETYRLGVQMHPGQEIHNFTLTGRN  368 (488)
T ss_dssp             SSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCC---EEEEECSSCC------CSSCEEEEEECCSSCCCCEEEEEEEE
T ss_pred             cCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCC---CCCCcccccc------CCceEEEEEcCCCCccEEEEEEEEEe
Confidence                899999998765  34567899999875432   0234322210      01125666654444699999999999


Q ss_pred             CCCCCccceeeec----cCCCCCCcc--ceeeccceeEEEEE--------EeeEEEEeeeeccCceeeEEEEeCCeEeee
Q psy7040         592 SQGKDQVFIEVVV----TDKPSAPEG--PIQWLLTLTDVTWE--------ISNYLQELHSSLMPISLESQYLMNDKRVTI  657 (716)
Q Consensus       592 ~~G~~~~s~~~~v----~~~p~~~~~--~~~~~~~~v~l~w~--------i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~  657 (716)
                      ..|.+..  .+.+    ..+|.+|..  +..+..+++.|+|.        +.+|.|+|+...     ...|..+-. +..
T Consensus       369 ~~G~~~S--~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~~g~~l~YeV~Yr~~~-----~~~w~~~~~-~~~  440 (488)
T 2q7n_A          369 PLGQAQS--AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKAN-----SKKEVRNAT-IRG  440 (488)
T ss_dssp             TTEEEEE--EEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEEEECSSSEEEEEEEEBCTT-----SCCEEEEEE-EEC
T ss_pred             CCCCccc--eEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCCCCCCCcceEEEEEEEECC-----CCCceEEEE-Eec
Confidence            9998543  2332    234444442  44456789999999        677888877632     223422111 100


Q ss_pred             cccceeeEEEEccCCCCCcEEEEEEEEcCCCC---ceeeEEEEEecCCC
Q psy7040         658 DNVDYFTKITIRPLQRSDTAQYTVTATNSQGK---DQVFIEVVVTDKPS  703 (716)
Q Consensus       658 ~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~---~~~s~~l~v~~~p~  703 (716)
                       .......+.|.+|.+++.|.++|+|.| .|.   +.+|..+.+.+++.
T Consensus       441 -~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e~  487 (488)
T 2q7n_A          441 -AEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTEA  487 (488)
T ss_dssp             -CEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCCC
T ss_pred             -CCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCCC
Confidence             001123349999999999999999999 888   47777777777654

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.86  E-value=1.1e-17  Score=180.66  Aligned_cols=386  Identities=10%  Similarity=0.050  Sum_probs=227.5

Q ss_pred             CeEEecCCCCCcEEEEEEEEEecCccCCCccccceEEecCCCCc--------ccccccccceecccCCC---------CC
Q psy7040         110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSK--------YTSVSSLDSHKRSNQPC---------GS  172 (716)
Q Consensus       110 ~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~p~~~--------~~~~~~~~~~~~~~~p~---------G~  172 (716)
                      ..|.|.+++..+.+.|+|+|.|..|... ......+. .+|...        .......+.|.+...++         |.
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~-~~~~l~V~-~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~  152 (585)
T 2ocw_A           75 FVVNIAQLSQDDSGRYKCGLGINSRGLS-FDVSLEVS-QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIG  152 (585)
T ss_pred             EEEEECCCCcccCEEEEEEcccCCCCce-EEEEEEEe-cCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCC
Confidence            4689999999999999999998876432 11222222 122111        11222345688875543         21


Q ss_pred             -----------------CceEEEEecCC---ccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEE
Q psy7040         173 -----------------GMVRKVQHLDY---NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKV  232 (716)
Q Consensus       173 -----------------~~~~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~  232 (716)
                                       .+++.+...+.   ...|.|.+++..|+|.|+|.|.|..|..+..+.|.|..+|  |.   .+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~--p~---~~  227 (585)
T 2ocw_A          153 LYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE--PE---LV  227 (585)
T ss_pred             CCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC--Cc---ee
Confidence                             23444444333   2389999999999999999999999998888999887643  22   23


Q ss_pred             eEEeCCeEEEEEECCCCCCCCccceEEEEEEeCC----------------CCCeEEccccCcccceEEEcCCCCCCeEEE
Q psy7040         233 SNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA----------------TGRWTPAGETEGPVTGLEVEGLIPNHKYKF  296 (716)
Q Consensus       233 ~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~  296 (716)
                      ....+..+.|.|.. ..... +...|.+......                ..+.............+.|.++...+.+.|
T Consensus       228 ~~~~G~~v~l~C~~-~~~~~-~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y  305 (585)
T 2ocw_A          228 YEDLRGSVTFHCAL-GPEVA-NVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY  305 (585)
T ss_pred             EEcCCCcEEEEEEc-CCCCC-CceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEE
Confidence            34467889999995 21111 1123332211110                111111111011223799999999999999


Q ss_pred             EEEEEcCCCCCCCCc--ccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEee--cCCC-ce
Q psy7040         297 RVRAVNKQGKSEPLT--TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKE--KYSP-IW  371 (716)
Q Consensus       297 ~v~a~n~~g~~~~~~--~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~--~~~~-~~  371 (716)
                      +|.|.|. |....+.  ....+.+..+...+..|..+.+  ..+..+.|.|.....+.  +...|.+.|..  .+.. ..
T Consensus       306 ~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~--~~G~~v~l~C~~~~~p~--p~i~~w~~W~~~~~g~~~~l  380 (585)
T 2ocw_A          306 LCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVVKG--VAGSSVAVLCPYNRKES--KSIKYWCLWEGAQNGRCPLL  380 (585)
T ss_pred             EEEEEcC-CCccccCceeeEEEEEecccccccCCcceEE--EeCCcEEEEEecCCCCC--ccEEEEEEEEccCCCCCcee
Confidence            9999995 3322111  1112333322233334444433  35667888887632211  22234334433  2210 00


Q ss_pred             E------------EEeee---cCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccE
Q psy7040         372 E------------KCAQT---EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDI  436 (716)
Q Consensus       372 ~------------~~~~~---~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~  436 (716)
                      .            .....   ......+.|.++...+.+.|+|.| |..|....+  . ...+..  .+|.+..  +...
T Consensus       381 ~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~--~-~l~V~~--~~p~~~~--~~~~  452 (585)
T 2ocw_A          381 VDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTT--V-EIKIIE--GEPNLKV--PGNV  452 (585)
T ss_pred             eeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCcccee--E-EEEEec--Ccccccc--CCce
Confidence            0            00000   112234888999999999999999 876643211  1 112211  1333322  4567


Q ss_pred             EEecCCeEEEEEEEe----ccCCCeEEEEeCCeEeccCCc-------EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         437 KVRAGSNFEFDINVI----GEPIPTKEWLCNDITIISKDR-------FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~----~~p~~~~~W~~~~~~~~~~~~-------~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      .+..|+.+.|.|.+.    +.|.+.+.|++++..+.....       ..+...+....|.|.++...|.|.|+|.|.|..
T Consensus       453 ~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  532 (585)
T 2ocw_A          453 TAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH  532 (585)
T ss_pred             eEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCC
Confidence            899999999999997    678889999999987643221       111123345799999999999999999999999


Q ss_pred             CceeeE-EEEEEE
Q psy7040         506 GTDKGT-AKVTVL  517 (716)
Q Consensus       506 g~~~~s-~~~~v~  517 (716)
                      |..... +.+.|.
T Consensus       533 G~~~~~~~~l~V~  545 (585)
T 2ocw_A          533 FYGETAAVYVAVE  545 (585)
T ss_pred             CccEEEEEEEEEE
Confidence            866543 555554

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.86  E-value=7.8e-20  Score=177.52  Aligned_cols=257  Identities=15%  Similarity=0.223  Sum_probs=185.7

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      ||.+. ..+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++...|.|.|+|.|.|.
T Consensus         5 pP~~~-~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~   83 (284)
T 2rik_A            5 PPFFD-LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV   83 (284)
T ss_dssp             CCEEE-ECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEE-ccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEEC
Confidence            44443 23456789999999999999999999999999999998888888877777889999999999999999999999


Q ss_pred             CCceeeEEEEEEEEE-EEEEeCCC----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec-----cccceeEEEE
Q psy7040         505 WGTDKGTAKVTVLGC-SLKWNPPE----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID-----NVDYFTKITI  574 (716)
Q Consensus       505 ~g~~~~s~~~~v~~v-~l~W~~p~----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~-----~~~~~~~~~i  574 (716)
                      .|..+.+..+.+... .+.-..+.    ..+......|.+    .+.+.+.+.|++.+.......     .......+.|
T Consensus        84 ~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~----~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i  159 (284)
T 2rik_A           84 AGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI----GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEM  159 (284)
T ss_dssp             TEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEE----ESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEE
T ss_pred             CceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEE----eeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEE
Confidence            998877777777611 10000110    112222233333    233455699999876543221     1123467999


Q ss_pred             cCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCC---ccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEE
Q psy7040         575 RPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP---EGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQ  647 (716)
Q Consensus       575 ~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~---~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~  647 (716)
                      .++...+.+.|+|.|.|..|....+..+.|..+|...   .......+..+.              |.|.+.|    .+.
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~--------------l~C~~~g~p~~~v~  225 (284)
T 2rik_A          160 YNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVH--------------LECELQGTPPFQVS  225 (284)
T ss_dssp             CSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEE--------------EEEECBSSSCCEEE
T ss_pred             CCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEE--------------EEEEEEecCCCEEE
Confidence            9999999999999999999876666666666655422   111122233444              5566555    899


Q ss_pred             EEeCCeEeeecc------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         648 YLMNDKRVTIDN------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       648 W~~~~~~~~~~~------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |+++|..+....      ......|.|.++...|.|.|+|.|.|..|....+..|.|.+
T Consensus       226 W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  284 (284)
T 2rik_A          226 WHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA  284 (284)
T ss_dssp             EEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             EEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEcC
Confidence            999999887651      12236899999999999999999999999999999888863

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.85  E-value=1.5e-20  Score=188.04  Aligned_cols=284  Identities=13%  Similarity=0.067  Sum_probs=165.5

Q ss_pred             CCCCCCCceEEEEe-CCeEEEEecCCCC-C-CCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIH-KDGCTLKWNKPKD-D-GGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        54 ~~~p~~~l~~~~~~-~~s~~l~W~~p~~-~-~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      .+.||.+|.+.+.. .+++.|+|++|.. + .+..+..|+|+|+..+++.|.......  .....++..+..|.|||+|.
T Consensus        31 ~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~~w~~~~~~~--~~~~~~~~l~~~y~~rV~a~  108 (380)
T 3lb6_C           31 KVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIITKN--LHYKDGFDLNKGIEAXIHTL  108 (380)
T ss_dssp             CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCSSCEEEEESS--SEEEEECCTTSCEEEEEEEE
T ss_pred             cCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCCcceEEEecc--EEEEEeecCCCceEEEEEee
Confidence            35677778887766 6899999999875 2 223588999999998878898776543  23444566699999999999


Q ss_pred             ec----CccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         131 NK----EGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       131 ~~----~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      |.    .|.+.+|.....++...+..                                                      
T Consensus       109 ~~~~~~~g~g~~S~~s~~~~~~~~eg------------------------------------------------------  134 (380)
T 3lb6_C          109 LPWQCTNGSEVQSSWAETTYWISPQG------------------------------------------------------  134 (380)
T ss_dssp             CCHHHHSSSCCBCCCEEEEECCCCCS------------------------------------------------------
T ss_pred             cCCcccCCccCccccchhhcccCCCC------------------------------------------------------
Confidence            75    67776665544443221111                                                      


Q ss_pred             CCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc---CcccceE
Q psy7040         207 INGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET---EGPVTGL  283 (716)
Q Consensus       207 ~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~---~~~~~~~  283 (716)
                                    .+|.+|.+ +.+.......+.++|+++... + ....|.+.+...+...+..+...   .+....+
T Consensus       135 --------------~P~~~P~n-l~C~~~~~~~l~csW~p~~~~-~-~~~~Y~l~y~~~~~~~~~~C~~~~~~~g~~~~C  197 (380)
T 3lb6_C          135 --------------IPETXVQD-MDCVYYNWQYLLCSWKPGIGV-L-LDTNYNLFYWYEGLDHALQCVDYIKADGQNIGC  197 (380)
T ss_dssp             --------------CTTSSCEE-EEEEEETTTEEEEEEECC--------CCEEEEEECTTCSSCEECSEEEEC--CEEEE
T ss_pred             --------------CCCCCCcE-eEEEECCCcEEEEEEcCCCCC-C-CCccEEEEEEECCCCccccCCCccccCCceEEE
Confidence                          25667777 788888889999999975532 2 46789999987665555555321   1223345


Q ss_pred             EEc--CCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEE
Q psy7040         284 EVE--GLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYII  361 (716)
Q Consensus       284 ~i~--~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v  361 (716)
                      .+.  ++.+++.|.++|.|.|..|.......  .+.. .....|.+|.++.+.....+.+.|+|.+|....+..+.+|+|
T Consensus       198 ~~~~~~~~~~~~Y~i~V~a~n~~G~~~s~~~--~~~~-~~~v~p~pP~~l~v~~~~~~~l~l~W~~P~~~~~~~~l~Yev  274 (380)
T 3lb6_C          198 RFPYLEASDYKDFYICVNGSSENKPIRSSYF--TFQL-QNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEI  274 (380)
T ss_dssp             ECCCCTTCSSSCEEEEEEEC-----CCCEEE--EECG-GGSCCCCCCEEEEEC-------CEEEECCSSSCCSTTEEEEE
T ss_pred             EeCCCcccceeEEEEEEEEEcCCeeeccccE--EEcH-HHcccCCCCceEEEEEcCCCeEEEEECCCCCCCCcceEEEEE
Confidence            555  56888999999999998776533221  1111 122468889899988777789999999987554456789999


Q ss_pred             EEeecCCCceEEEeeecCCCCeEEecC-CCCCCeEEEEEEEEeC---CCCCCCCCCCCceE
Q psy7040         362 EKKEKYSPIWEKCAQTEGDTPKGKVLD-LIEGNQYEFRVLAVNK---GGPGEPSDPTAPHI  418 (716)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~~~~Y~~~v~a~n~---~g~~~~s~~~~~~~  418 (716)
                      +|+..+ ..|.....    ..++.+.+ |.+++.|.|+|+|...   .+.|.+|+.+....
T Consensus       275 ~y~~~~-~~w~~~~~----~~~~~l~~~L~p~t~Y~~qVRa~~~~~~~~~g~WSeWS~~~~  330 (380)
T 3lb6_C          275 EIREDD-TTLVTATV----ENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQC  330 (380)
T ss_dssp             CC---------CCEE----SSSCC------------CCEEEEECTTTCSSCCCCCCCCC--
T ss_pred             EEEeCC-CCceEecc----cceEEEeCccCCCcEEEEEEEEEEcccCCCCCCCCCCCCCEE
Confidence            998853 45654332    12577888 9999999999999954   23444555544433

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.85  E-value=2e-20  Score=171.93  Aligned_cols=182  Identities=24%  Similarity=0.319  Sum_probs=141.3

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEeccc-----CCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-----REPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~-----~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      +|..+.+...+. ++.|+|++|..++|.++.+|.|+|+..+...|..+...     ..+++.|.+|.|++.|.|+|+|.|
T Consensus        11 ~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   89 (209)
T 2vkw_A           11 SPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALN   89 (209)
T ss_dssp             CCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEEEEEEE
T ss_pred             CCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEEEEEEEEc
Confidence            344466666666 79999999977777789999999998888888665432     246899999999999999999999


Q ss_pred             cCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCc
Q psy7040         132 KEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD  211 (716)
Q Consensus       132 ~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  211 (716)
                      ..|.+.++......+...                                                              
T Consensus        90 ~~G~~~~s~~~~~~T~~~--------------------------------------------------------------  107 (209)
T 2vkw_A           90 GKGLGEISAASEFKTQPV--------------------------------------------------------------  107 (209)
T ss_dssp             TTEECCCCCCEEEECCCS--------------------------------------------------------------
T ss_pred             CCcccCCcccccccccCC--------------------------------------------------------------
Confidence            999888775543322110                                                              


Q ss_pred             eeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCC
Q psy7040         212 SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPN  291 (716)
Q Consensus       212 ~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  291 (716)
                               .+|.+|.. +.+.....+++.|+|.+|. +++.++.+|.|+++. ....|............+.|.+|.|+
T Consensus       108 ---------~~P~~P~~-~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~  175 (209)
T 2vkw_A          108 ---------REPSAPKL-EGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRA-LSSEWKPEIRLPSGSDHVMLKSLDWN  175 (209)
T ss_dssp             ---------CSCCCCEE-EEEECTTSSCEEEEEECCC-CTTSCCCEEEEEEEE-TTSCCCCCEEECTTCCEEEECSCCTT
T ss_pred             ---------CCCCCCcc-cccccccCCeEEEEEECcc-cCCCCCceEEEEEEC-CCCCCceeeecCCCccEEEecCCCCC
Confidence                     14666665 6666777899999999884 445589999999987 55566555444456689999999999


Q ss_pred             CeEEEEEEEEcCCCCCCCCccc
Q psy7040         292 HKYKFRVRAVNKQGKSEPLTTT  313 (716)
Q Consensus       292 ~~y~~~v~a~n~~g~~~~~~~~  313 (716)
                      +.|.|+|+|.|..|.+.++...
T Consensus       176 t~Y~~~V~A~n~~G~s~~S~~~  197 (209)
T 2vkw_A          176 AEYEVYVVAENQQGKSKAAHFV  197 (209)
T ss_dssp             CEEEEEEEEEETTEECCCEEEE
T ss_pred             CEEEEEEEEEeCCccCCcchhh
Confidence            9999999999999988776654

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.85  E-value=5e-20  Score=170.14  Aligned_cols=191  Identities=20%  Similarity=0.348  Sum_probs=145.9

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC-CcEEEecc-------------cCCCeEEecCCCCC
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWIPVGK-------------TREPEMDVTGLTPG  120 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~~-------------~~~~~~~i~~L~~~  120 (716)
                      +.||.++.+..++.+++.|+|++|...+ .++.+|.|+|+..+. ..|..+..             .....+.|.+|.++
T Consensus         2 ~~pP~~~~~~~~~~~sv~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   80 (214)
T 2ibg_A            2 TYPPTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQ   80 (214)
T ss_dssp             CCCCCCCEEEEEETTEEEEEEEEECCSS-CCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTT
T ss_pred             CCCCCCCEeeEecCCEEEEEEECCCCCC-CCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCC
Confidence            5688888999999999999999987554 579999999998654 67776553             23468899999999


Q ss_pred             cEEEEEEEEEecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEE
Q psy7040         121 HEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFY  200 (716)
Q Consensus       121 ~~y~~~v~a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y  200 (716)
                      +.|.|+|+|.|..|.+..+.....+.......                                                
T Consensus        81 t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~------------------------------------------------  112 (214)
T 2ibg_A           81 HTYRFRILAVYSNNDNKESNTSAKFYLQPGAA------------------------------------------------  112 (214)
T ss_dssp             CEEEEEEEEEETTSCEEECCCCCCEECCCSTT------------------------------------------------
T ss_pred             CEEEEEEEEEecCCCCCCCCCcccEEeccCcC------------------------------------------------
Confidence            99999999999999776665333222110000                                                


Q ss_pred             EEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCC-CCeEEccccCcc
Q psy7040         201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT-GRWTPAGETEGP  279 (716)
Q Consensus       201 ~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~  279 (716)
                                         ..+|.+|.+ +.+.....+++.|+|++|....+..+.+|.|+++..+. ..|.........
T Consensus       113 -------------------~~~~~~P~~-~~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~  172 (214)
T 2ibg_A          113 -------------------LDPMPVPEL-LEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAH  172 (214)
T ss_dssp             -------------------SCCCCCCEE-CCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTT
T ss_pred             -------------------CCCCCCCcc-cEEEEccCCeEEEEEeCCCccCCCCcceEEEEEEECCCCcceEEeeccCCc
Confidence                               013445555 66777788899999998864455579999999987766 677766554445


Q ss_pred             cceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccc
Q psy7040         280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA  314 (716)
Q Consensus       280 ~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~  314 (716)
                      ...+.|.+|.|++.|.|+|+|.|..|.+.++....
T Consensus       173 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~  207 (214)
T 2ibg_A          173 ARSFKIAPLETATMYEFKLQSFSAASASEFSALKQ  207 (214)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEE
T ss_pred             ceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEe
Confidence            68999999999999999999999999888776653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.85  E-value=2.6e-19  Score=175.87  Aligned_cols=263  Identities=23%  Similarity=0.303  Sum_probs=187.3

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEE-eCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~-~~~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      +|.+.. .+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.+. ..+....|.|.++...|.|.|+|.|.
T Consensus         4 ~P~~~~-~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            4 APHFKE-ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCEEEE-CCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCeeee-cccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            455442 245688999999999999999999999999999888643 345544 34556799999999999999999999


Q ss_pred             cCCCceeeEEEEEEEEEEEEEeCCC----------CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec-----ccc
Q psy7040         503 NSWGTDKGTAKVTVLGCSLKWNPPE----------DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID-----NVD  567 (716)
Q Consensus       503 n~~g~~~~s~~~~v~~v~l~W~~p~----------~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~-----~~~  567 (716)
                      |..|....+..+.+..... ...+.          ..+......|.+...+    .+.+.|++.+.......     ...
T Consensus        83 n~~g~~~~~~~l~V~~~p~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p----~p~i~W~~~~~~~~~~~~~~~~~~~  157 (305)
T 2nzi_A           83 NQGGSVSGTASLEVEVPAK-IHLPKTLEGMGAVHALRGEVVSIKIPFSGKP----DPVITWQKGQDLIDNNGHYQVIVTR  157 (305)
T ss_dssp             ETTEEEEEEEEEEECEEEE-ECCCHHHHSSCCEEEETTCCEEEEEEEEEES----CCEEEEEESSSBCCSSSSCEEEECS
T ss_pred             cCCCCccceEEEEEecCCc-cCCCccccccccEEecCCCEEEEEEEECCCC----CCEEEEEECCEECCCCCcEEEEEcC
Confidence            9999877777776651111 11110          1122223445444433    34499999776543211     112


Q ss_pred             ceeEEEEcC-CCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCcc--ceeeccceeEEEEE---------EeeEEEEe
Q psy7040         568 YFTKITIRP-LQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG--PIQWLLTLTDVTWE---------ISNYLQEL  635 (716)
Q Consensus       568 ~~~~~~i~~-L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~--~~~~~~~~v~l~w~---------i~~y~v~~  635 (716)
                      ....+.|.+ +...+.|.|+|.|.|..|....+..+.|..+|..|..  +..+..+.+.|.|.         +.+|.+++
T Consensus       158 ~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~  237 (305)
T 2nzi_A          158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEK  237 (305)
T ss_dssp             SEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEE
T ss_pred             CceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEE
Confidence            346788998 9999999999999999998877777776555555542  44567889999997         67888877


Q ss_pred             eeeccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE-EecCCCCC
Q psy7040         636 HSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV-VTDKPSAP  705 (716)
Q Consensus       636 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~-v~~~p~~p  705 (716)
                      +...     ...|.+.+...       ...|.|.+|.+++.|.|+|.|.|..|.+..+.... +.+++.+|
T Consensus       238 ~~~~-----~~~w~~~~~~~-------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~~t~~~~p  296 (305)
T 2nzi_A          238 CATT-----AERWLRVGQAR-------ETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKT  296 (305)
T ss_dssp             EETT-----SCCEEEEEEES-------SSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCEECCC---
T ss_pred             ecCC-----CCccEECcccc-------CceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCEEcCCccc
Confidence            6532     56788765543       36799999999999999999999999997765443 44444444

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.84  E-value=4.6e-19  Score=188.32  Aligned_cols=395  Identities=13%  Similarity=0.081  Sum_probs=229.0

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEE
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDK  262 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~  262 (716)
                      ....|.|.+++..|+|.|+|.|.|  |. +..+.|.|..+|.+...+-......++.+.|.|.....    +...+.+..
T Consensus        78 ~~~~L~I~~~~~~D~G~Y~C~a~n--g~-~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~----~~~~v~W~~  150 (524)
T 2ec8_A           78 KQNEWITEKAEATNTGKYTCTNKH--GL-SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDP----EVTNYSLKG  150 (524)
T ss_dssp             CSSEEEESSCCSTTCEEEEEEETT--SC-EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCC----CCSCEEEEC
T ss_pred             ccceEEEcccchhhCEEEEEeecC--Cc-ceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCC----ccceEEEEc
Confidence            468999999999999999999999  54 77788888766644332223445578899999996432    222333322


Q ss_pred             EeCCC---CCeEEccccCcccceEEEcCCCCCCeE-EEEEEEEcCCCCCCCCcccceEEec-CCCCCC---CCCCCcEEE
Q psy7040         263 MDEAT---GRWTPAGETEGPVTGLEVEGLIPNHKY-KFRVRAVNKQGKSEPLTTTASIEAK-NPFNQP---GKPGTPEIK  334 (716)
Q Consensus       263 ~~~~~---~~~~~~~~~~~~~~~~~i~~L~p~~~y-~~~v~a~n~~g~~~~~~~~~~~~~~-~~~~~p---~~p~~~~~~  334 (716)
                      .+...   ......    .....+.|.++...+.+ .|+|.|.|..|........  +.+. .+..+|   ..|..  ..
T Consensus       151 ~~g~~l~~~~~~~~----~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~--l~V~~~~~~~p~i~~~~~~--~~  222 (524)
T 2ec8_A          151 CQGKPLPKDLRFIP----DPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFI--LKVRPAFKAVPVVSVSKAS--YL  222 (524)
T ss_dssp             SSSCCCCSSCEEEE----ETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEE--CCEECCCCSCCEEECSCSE--EE
T ss_pred             cCCcCcCCCCceeE----CCCccEEEeccchhhCCceEEEEEEECCceEEEEEEE--EEEEeCCCCCCcEEecCCc--ce
Confidence            11110   111111    12457999999999999 9999999876543211111  1111 011112   12222  23


Q ss_pred             eeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC---ceEEEeee-----cCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040         335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP---IWEKCAQT-----EGDTPKGKVLDLIEGNQYEFRVLAVNKGG  406 (716)
Q Consensus       335 ~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~---~~~~~~~~-----~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g  406 (716)
                      ...+..+.|.|.....+    .. ..+.|...+..   ........     ......+.|.++...+.+.|+|.|.|..|
T Consensus       223 v~~G~~v~L~C~~~g~p----~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g  297 (524)
T 2ec8_A          223 LREGEEFTVTCTIKDVS----SS-VYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG  297 (524)
T ss_dssp             EETTSCEEEEEEEEESS----TT-CEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSC
T ss_pred             EEcCCcEEEEEEEecCC----Cc-EEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCC
Confidence            34566777777652211    11 11233322212   11111111     12345788999999999999999999887


Q ss_pred             CCCCCCCCCceEeecCCCCCccccc--ccccEEEecCCeEEEEEEEeccCCCe-EEEEeCCeEeccCC-cEEEEeCC---
Q psy7040         407 PGEPSDPTAPHIARAKKVSPYINRD--QLSDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKD-RFKIVNDD---  479 (716)
Q Consensus       407 ~~~~s~~~~~~~~~~~~~~P~~~~~--~~~~~~~~~g~~~~~~~~v~~~p~~~-~~W~~~~~~~~~~~-~~~~~~~~---  479 (716)
                      ....   .....+.   .+|.+...  ......+..|..+.|.|.+.+.|.+. +.|++++..+.... ++.....+   
T Consensus       298 ~~~~---~~~l~V~---~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~  371 (524)
T 2ec8_A          298 SANV---TTTLEVV---DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNI  371 (524)
T ss_dssp             EEEE---EEEEEEE---SSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCC
T ss_pred             ceEE---EEEEEEe---ccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCc
Confidence            6432   1111121   24444322  23468899999999999999999999 99999998876554 33322222   


Q ss_pred             -CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE-EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEcc
Q psy7040         480 -KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTN  557 (716)
Q Consensus       480 -~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~  557 (716)
                       ....|.|.++...|.|.|+|.|.|..|....++.+.+. ...+.-..... .|  ...|.+...+..    .+.|++.+
T Consensus       372 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~~~-~g--~l~C~~~g~P~p----~i~W~~~~  444 (524)
T 2ec8_A          372 RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLV-NG--MLQCVAAGFPEP----TIDWYFCP  444 (524)
T ss_dssp             EEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEEECCS-SS--CEEEEEEEESCC----EEECCCC-
T ss_pred             eeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeecccCc-Cc--EEEEEEEeecCC----EEEEEECC
Confidence             35689999999999999999999999998888877777 22222222222 22  455666554444    49999875


Q ss_pred             ceeee----------e---ccccceeEEE----EcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCC
Q psy7040         558 DKRVT----------I---DNVDYFTKIT----IRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA  610 (716)
Q Consensus       558 ~~~~~----------~---~~~~~~~~~~----i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~  610 (716)
                      .....          .   ........+.    +......+.+.|+|.|.|..|.......+.|.++|..
T Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~~  514 (524)
T 2ec8_A          445 GTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE  514 (524)
T ss_dssp             ---------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC------
T ss_pred             CcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCHH
Confidence            43210          0   0001112222    3434468899999999999998877777777666543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.84  E-value=1.5e-19  Score=177.62  Aligned_cols=218  Identities=23%  Similarity=0.368  Sum_probs=171.2

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEE
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW  460 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W  460 (716)
                      ...+.|.++...+.+.|+|.|.|..|....+... .+...+....|.. ......+.+..|..+.|.|.+.+.|.+.+.|
T Consensus        61 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l-~V~~~p~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W  138 (305)
T 2nzi_A           61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASL-EVEVPAKIHLPKT-LEGMGAVHALRGEVVSIKIPFSGKPDPVITW  138 (305)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE-EECEEEEECCCHH-HHSSCCEEEETTCCEEEEEEEEEESCCEEEE
T ss_pred             EEEEEEccCChhhCeEEEEEEEcCCCCccceEEE-EEecCCccCCCcc-ccccccEEecCCCEEEEEEEECCCCCCEEEE
Confidence            3479999999999999999999987753211111 1111111111111 1122457788999999999999999999999


Q ss_pred             EeCCeEeccCCcEEEEeCCCeEEEEECC-CCCCCceeEEEEEEcCCCceeeEEEEEEE-----------------EEEEE
Q psy7040         461 LCNDITIISKDRFKIVNDDKSTKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTVL-----------------GCSLK  522 (716)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~-l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-----------------~v~l~  522 (716)
                      ++++..+....++.+........|.|.+ +.+.|.|.|+|.|.|..|....+..+.+.                 ++.|+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~  218 (305)
T 2nzi_A          139 QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLT  218 (305)
T ss_dssp             EESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEE
T ss_pred             EECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEE
Confidence            9999988877888887777788999999 99999999999999999998888877776                 78999


Q ss_pred             EeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceee
Q psy7040         523 WNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV  602 (716)
Q Consensus       523 W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~  602 (716)
                      |.+|..+++..+..|.+++.+...    ..|........        ..+.|.+|.+++.|.|+|.|.|..|.|.++...
T Consensus       219 w~~p~~~g~~~i~~y~v~~~~~~~----~~w~~~~~~~~--------~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~  286 (305)
T 2nzi_A          219 WTEPASDGGSKITNYIVEKCATTA----ERWLRVGQARE--------TRYTVINLFGKTSYQFRVIAENKFGLSKPSEPS  286 (305)
T ss_dssp             EECCSCCSBSCEEEEEEEEEETTS----CCEEEEEEESS--------SEEEECSCCSSCEEEEEEEEEETTEECCCCCCC
T ss_pred             EcCCccCCCCceeEEEEEEecCCC----CccEECccccC--------ceEEecCCCCCCeEEEEEEEEeCCcccCCcCCC
Confidence            999888788889999999998887    89988765442        889999999999999999999999999988877


Q ss_pred             e-ccCCCCCCc
Q psy7040         603 V-VTDKPSAPE  612 (716)
Q Consensus       603 ~-v~~~p~~~~  612 (716)
                      . +..++..|.
T Consensus       287 ~~~~t~~~~p~  297 (305)
T 2nzi_A          287 EPTITKEDKTR  297 (305)
T ss_dssp             CCEECCC----
T ss_pred             CCEEcCCcccc
Confidence            6 444444444

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.84  E-value=3.1e-19  Score=185.86  Aligned_cols=415  Identities=12%  Similarity=-0.005  Sum_probs=227.3

Q ss_pred             EeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccc--cCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCC
Q psy7040         232 VSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE--TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP  309 (716)
Q Consensus       232 ~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~  309 (716)
                      .....++.++|.|.... +.. .+.  .++      ..|.....  .......|.|.++.. +.+ |+|.|.+..+....
T Consensus         9 ~~v~~G~~v~L~C~~~g-p~p-~~~--~~~------~~w~k~~~~~~~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~   76 (450)
T 1z7z_I            9 VILPRGGSVLVTCSTSC-DQP-MLL--GIE------TPLPKKELLLPGNNRKVYELSNVQE-DSQ-PMCYSNCPDGQSTA   76 (450)
T ss_dssp             EEEETTEEEEEEEECCS-SCC-CEE--EEC------SSSCEEECCSSTTTEEEEEEEEECS-CBC-CEEEEEETTEEEEE
T ss_pred             eEEecCCcEEEEEEccC-CCc-ccc--ccc------ceeeecceEecCCCceEEEEEeccc-CCe-eEEEEeCCCCccee
Confidence            34457889999999633 111 110  000      02222211  012345788888887 777 99999764432211


Q ss_pred             CcccceEEecCC-CCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecC
Q psy7040         310 LTTTASIEAKNP-FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLD  388 (716)
Q Consensus       310 ~~~~~~~~~~~~-~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~  388 (716)
                         ...+.+..+ ......|.+..+  ..+..+.|.|......   +...+.|.|...+..-.............+.|..
T Consensus        77 ---~~~l~V~~~P~~~~~~~~~~~v--~~G~~v~L~C~~~g~~---~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~  148 (450)
T 1z7z_I           77 ---KTFLTVYWTPERVELAPLPSWQ--PVGKNLTLRCQVEGGA---PRANLTVVLLRGEKELKREPAVGEPAEVTTTVLV  148 (450)
T ss_dssp             ---ECEEEEEBCCSEEEECCCCSEE--CTTSEEEEEEEEECCB---CGGGEEEEEEETTEEEEEEECCTTTEEEEEEEEC
T ss_pred             ---EEEEEEEeCCCcceecCCCceE--eeCCeEEEEEEecCCC---CCcCcEEEEeeCCEEeecccccccccceEEEEEe
Confidence               111222211 000012222222  3466788888763221   2222344554433110000001112234788999


Q ss_pred             CCCCCeEEEEEEEEeCCCCCCC------CCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEecc-C--CCeEE
Q psy7040         389 LIEGNQYEFRVLAVNKGGPGEP------SDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-P--IPTKE  459 (716)
Q Consensus       389 l~~~~~Y~~~v~a~n~~g~~~~------s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~-p--~~~~~  459 (716)
                      +...+.+.|+|.|.|..|....      +..........+..+|.+.    ....+..|+.+.|.|.+.+. |  .+.+.
T Consensus       149 ~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~----~~~~v~~G~~v~l~C~~~g~~P~~~~~~~  224 (450)
T 1z7z_I          149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV----SPRVLEVDTQGTVVCSLDGLFPVSEAQVH  224 (450)
T ss_dssp             CSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEE----CCSEEETTSEEEEEEEEESCTTGGGCEEE
T ss_pred             eccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEec----CceeEEeCCcEEEEEEeeCCCCCCceEEE
Confidence            9999999999999999774321      0111111111112334432    12678999999999999998 7  78999


Q ss_pred             EEeCCeEeccCCcEEEEeCCCeEEEE-ECCCCCCCce--eEEEEEEcCCCceeeEEEEEEE---EEEEEEeCC-CCCCCC
Q psy7040         460 WLCNDITIISKDRFKIVNDDKSTKLK-VFDSKRGDSG--IYTLAVKNSWGTDKGTAKVTVL---GCSLKWNPP-EDDGGA  532 (716)
Q Consensus       460 W~~~~~~~~~~~~~~~~~~~~~~~l~-i~~l~~~~~~--~y~~~a~n~~g~~~~s~~~~v~---~v~l~W~~p-~~~~~~  532 (716)
                      |++++..+..  .+.  .......+. ..++...|.|  .|+|.|.|..|.......+.+.   ...+.-... ...+..
T Consensus       225 W~~~~~~~~~--~~~--~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~  300 (450)
T 1z7z_I          225 LALGDQRLNP--TVT--YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTE  300 (450)
T ss_dssp             EEETTEECCC--EEE--EETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCE
T ss_pred             EeCCCEeCCc--eEE--ecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCc
Confidence            9999988754  222  222222222 2277899988  9999999999988777777766   222222111 111222


Q ss_pred             ceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCC-CCc---cceeeeccCCC
Q psy7040         533 PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG-KDQ---VFIEVVVTDKP  608 (716)
Q Consensus       533 ~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G-~~~---~s~~~~v~~~p  608 (716)
                      ....|.+.      +.+.+.|  .+....   .......+.|..+...+.+.|+|.|.|..| ...   .+..+.|..+|
T Consensus       301 v~l~C~~~------p~p~i~W--~g~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P  369 (450)
T 1z7z_I          301 VTVKCEAH------PRAKVTL--NGVPAQ---PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP  369 (450)
T ss_dssp             EEEEEEC---------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEE
T ss_pred             EEEEEecC------CCCEeEE--CCEEcC---CCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCC
Confidence            22333332      3444889  333221   111235789999999999999999997554 322   33333354444


Q ss_pred             CCCccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEE
Q psy7040         609 SAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT  684 (716)
Q Consensus       609 ~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~  684 (716)
                      .... ..  ....+.+   ..|-.+   .|.|.+.|    .+.|+++|..+....    ..+   .+...|+|.|+|.|.
T Consensus       370 ~~~~-~~--~p~~~~~---~~g~~~---~l~C~~~g~P~p~i~W~~~g~~~~~~g----~~~---~v~~~d~G~Y~C~a~  433 (450)
T 1z7z_I          370 RLDE-RD--CPGNWTW---PENSQQ---TPMCQAWGNPLPELKCLKDGTFPLPIG----ESV---TVTRDLEGTYLCRAR  433 (450)
T ss_dssp             ECCS-TT--SCSEEEE---ETTCEE---CCCCCCEEESCCEEEEEETTTEECCTT----SCE---ECCGGGCEEEEEEEE
T ss_pred             ceee-cc--CCCceeE---cCCCeE---EEEEecccCCCCcEEEEECCcccCCCC----CeE---eEehhhCeEEEEEEE
Confidence            3222 10  0011110   012222   38898888    899999998554431    112   688899999999999


Q ss_pred             cCCCCceeeEEEEEecC
Q psy7040         685 NSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       685 n~~G~~~~s~~l~v~~~  701 (716)
                      |..|....++.|.|..+
T Consensus       434 N~~G~~~~~~~l~V~~~  450 (450)
T 1z7z_I          434 STQGEVTREVTVNVLSP  450 (450)
T ss_dssp             ETTEEEEEEEEEEEECC
T ss_pred             eCCCceeEEEEEEEEcC
Confidence            99999999999999764

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.84  E-value=1.3e-19  Score=166.81  Aligned_cols=189  Identities=20%  Similarity=0.286  Sum_probs=143.5

Q ss_pred             CCCCCCCCeEEeEEeCCeEEEEEECCCCC---CCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEE
Q psy7040         222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDD---GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRV  298 (716)
Q Consensus       222 ~p~~p~~~~~~~~~~~~~~~l~W~~p~~~---~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v  298 (716)
                      ++.+|.+ +.+.....+++.|+|++|..+   ....+.+|.|+++..+...+.... .......+.|.+|.|++.|.|+|
T Consensus         4 P~~~P~~-l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V   81 (211)
T 3p4l_A            4 PMMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN-ANATTLSYLVTGLKPNTLYEFSV   81 (211)
T ss_dssp             CCCCCEE-EEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEE-EEESSSEEEECSCCTTCEEEEEE
T ss_pred             CCCCCCC-EEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEE-eCCCceEEEecCcCCCCEEEEEE
Confidence            5667777 888888899999999987533   134688999999876544322111 23456899999999999999999


Q ss_pred             EEEcCCCCCCCCcccceEEecCCCCCCC-CCCCcEEEee--eCCeEEEEecCCCCCCCccceEEEEEEeecCCCc---eE
Q psy7040         299 RAVNKQGKSEPLTTTASIEAKNPFNQPG-KPGTPEIKDF--DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI---WE  372 (716)
Q Consensus       299 ~a~n~~g~~~~~~~~~~~~~~~~~~~p~-~p~~~~~~~~--~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~---~~  372 (716)
                      +|.|..|.+.++...   .+.+....|. +|.++.+...  +.+++.|+|.+|...++ .+.+|.|+++..+...   |.
T Consensus        82 ~A~n~~g~~~~S~~~---~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~  157 (211)
T 3p4l_A           82 MVTKGRRSSTWSMTA---HGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWV  157 (211)
T ss_dssp             EEEETTEECCCCCCE---EEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCCS-CCCEEEEEEESCTTSCGGGSE
T ss_pred             EEEcCCCCCccceeE---eeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCCC-CEEEEEEEEEECCCCCCCceE
Confidence            999999987766553   3344445666 8888988877  47899999999875444 8999999998765432   33


Q ss_pred             EEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCce
Q psy7040         373 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH  417 (716)
Q Consensus       373 ~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~  417 (716)
                      . ........++.|.+|.+++.|.|+|+|.|..|.|++|.+....
T Consensus       158 ~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~  201 (211)
T 3p4l_A          158 I-EPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFR  201 (211)
T ss_dssp             E-EEEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEE
T ss_pred             E-EEecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEcc
Confidence            2 2345678899999999999999999999999999988764433

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.83  E-value=2e-19  Score=168.31  Aligned_cols=219  Identities=20%  Similarity=0.274  Sum_probs=144.6

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcE-EEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-IPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +.||.+|.+..++.+++.|+|++|.    +.+.+|.|+|+..+...+ ........+++.|.+|.|++.|.|+|+|.|..
T Consensus         6 ~~~P~~l~~~~~~~~si~l~W~~p~----g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   81 (234)
T 3f7q_A            6 LGAPQNPNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQ   81 (234)
T ss_dssp             CCCCEEEEEEECSSSCEEEEEECCS----SCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCCcceEEEEcCCCEEEEEEECCC----CccceEEEEEEECCCCccceEEEcCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence            4556668888999999999999972    359999999986654322 22223445899999999999999999999999


Q ss_pred             ccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCcee
Q psy7040         134 GESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSV  213 (716)
Q Consensus       134 g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  213 (716)
                      |.+.++......+.                                                                  
T Consensus        82 G~g~~s~~~~~~T~------------------------------------------------------------------   95 (234)
T 3f7q_A           82 GEGPYSSLVSCRTH------------------------------------------------------------------   95 (234)
T ss_dssp             EECCCCCCEEEECC------------------------------------------------------------------
T ss_pred             CcCCCCCeEEEEcC------------------------------------------------------------------
Confidence            98877654433221                                                                  


Q ss_pred             EEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCC-----eEEccccCcccceEEEcCC
Q psy7040         214 EVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGR-----WTPAGETEGPVTGLEVEGL  288 (716)
Q Consensus       214 ~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~-----~~~~~~~~~~~~~~~i~~L  288 (716)
                            ...|.+|.+ +.+.....+++.|+|++|...+| .+.+|.|++.......     |............+.|.+|
T Consensus        96 ------~~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  167 (234)
T 3f7q_A           96 ------QEVPSEPGR-LAFNVVSSTVTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENL  167 (234)
T ss_dssp             ------CCCCCCCCC-CEEEECSSSCEEEECCCCSCCSS-CCCEEEEEEEEBCTTSCBSSCCEECCCSCTTCCEEEEECC
T ss_pred             ------CCCCCCCCc-cEEEEecCCEEEEEEcCCCCCCC-ceeEEEEEEEECCCCCCccCcceEEEecCCcceEEEeCCC
Confidence                  135666777 78888889999999998876555 7999999998754432     3333333345678999999


Q ss_pred             CCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCC-CCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEee
Q psy7040         289 IPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGK-PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKE  365 (716)
Q Consensus       289 ~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~-p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~  365 (716)
                      .|++.|.|+|+|.|..|.+..+...  +.+.+....|.. |....+..+..            ..|..+.+|.+++++
T Consensus       168 ~p~t~Y~~~V~A~n~~G~g~~S~~~--~~~~T~~~~P~~~P~~~~~~i~~~------------~~g~~~~~~~~~~~~  231 (234)
T 3f7q_A          168 RESQPYRYTVKARNGAGWGPEREAI--INLATQPKRPMSIPIIPDIPIVDA------------QSGEDYDSFLMYSDD  231 (234)
T ss_dssp             CTTCCEEEEEEEEETTEECCCEEEE--ECGGGSCCCCCCCCCCTTCCEEET------------TC-------------
T ss_pred             CCCCeEEEEEEEECCCccCCCcCce--eEeecCCCCCCCCccccceeeEEc------------ccCcchheeeeehhh
Confidence            9999999999999999988776532  333333334432 32222111111            234467888877654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.83  E-value=1.9e-19  Score=184.75  Aligned_cols=295  Identities=18%  Similarity=0.210  Sum_probs=194.6

Q ss_pred             CeEEecCC-----CCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCC
Q psy7040         382 PKGKVLDL-----IEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP  456 (716)
Q Consensus       382 ~~~~i~~l-----~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~  456 (716)
                      ..+.+.++     ...+...|+|.|.+..+....+... .....   .+|.+. .......+..|+.+.|.|.+.+.|.+
T Consensus        77 ~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~-~l~v~---~p~~~~-~~~~~~~~~~G~~v~l~C~~~~~p~~  151 (403)
T 3laf_A           77 GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTA-KVMVA---GPLRFL-SQTESITAFMGDTVLLKCEVIGDPMP  151 (403)
T ss_dssp             SCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCE-EEEEC---CCCEEC-SCCCCEEEETTSCEEECCCEECSSCC
T ss_pred             CcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEE-EEEec---CCCccc-cCCCcEEEEcCCeEEEEEEEcccCCC
Confidence            45666666     6668899999999754332222221 12221   134332 33556889999999999999999999


Q ss_pred             eEEEEeCCeEecc---CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee-eEEEEEEE-----EEEEEE-eCC
Q psy7040         457 TKEWLCNDITIIS---KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVL-----GCSLKW-NPP  526 (716)
Q Consensus       457 ~~~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~-~s~~~~v~-----~v~l~W-~~p  526 (716)
                      .+.|++++..+..   ..+....   ....|.|.++...|.|.|+|.|.|..|... ....+.+.     ...+.+ ..+
T Consensus       152 ~v~W~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~  228 (403)
T 3laf_A          152 TIHWQKNQQDLNPIPGDSRVVVL---PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRP  228 (403)
T ss_dssp             EEEEEESSSBCCCCTTCCSEEEC---TTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECC
T ss_pred             eEEEEECCEeccccCCceEEEEc---CCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCC
Confidence            9999999987742   2222222   233799999999999999999999887633 34444444     111111 111


Q ss_pred             C----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecc---ccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccc
Q psy7040         527 E----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF  599 (716)
Q Consensus       527 ~----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s  599 (716)
                      .    ..+......|.+...+.    +.+.|++.+........   ......+.|.++...+.+.|+|.|.|..|....+
T Consensus       229 ~~~~~~~g~~~~l~C~~~~~p~----~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  304 (403)
T 3laf_A          229 SNVIAIEGKDAVLECCVSGYPP----PSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISAS  304 (403)
T ss_dssp             CCEEEETTSCEEECCEEEEESC----CEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CceEecCCCcEEEEEEcCCCCC----CeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEE
Confidence            1    11223334455544333    34999997764432111   1123579999999999999999999998876666


Q ss_pred             eeeeccCCCCC---CccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeecc---cceeeEEEEc
Q psy7040         600 IEVVVTDKPSA---PEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTIDN---VDYFTKITIR  669 (716)
Q Consensus       600 ~~~~v~~~p~~---~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~~---~~~~~~~~i~  669 (716)
                      ..+.|..+|..   |..+....+..+.              |.|.+.|    .+.|+++|..+....   ......|.|.
T Consensus       305 ~~l~V~~~p~~~~~~~~~~~~~g~~v~--------------l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~  370 (403)
T 3laf_A          305 AELTVLVPPWFLNHPSNLYAYESMDIE--------------FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRIL  370 (403)
T ss_dssp             EEEEEEEEEEEEECCCCEECCTTCCEE--------------ECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEES
T ss_pred             EEEEEECCCcEeecCcceEEecCCeEE--------------EEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEe
Confidence            66666544421   1111112233343              6666666    899999999876541   1122679999


Q ss_pred             cCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         670 PLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       670 ~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                      ++...|.|.|+|.|.|..|....++.|.|..||
T Consensus       371 ~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          371 GVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             ccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence            999999999999999999999999999998865

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.83  E-value=2.3e-20  Score=191.19  Aligned_cols=220  Identities=19%  Similarity=0.209  Sum_probs=159.5

Q ss_pred             ccccCcceEEEEEEEeCCCCcee-EEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCC--C
Q psy7040         191 MAQRADAGFYTVTAENINGKDSV-EVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA--T  267 (716)
Q Consensus       191 ~l~~~~~g~y~c~a~n~~g~~~~-~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~--~  267 (716)
                      +....+.|.|.|.+.|..+.... .....+..+|.+|.+ +. .....+++.|+|++|...+|.++..|.|+++...  .
T Consensus       301 ~S~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~n-l~-~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~  378 (536)
T 3fl7_A          301 HTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHY-LT-AVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPES  378 (536)
T ss_dssp             SEECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSC-EE-EECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-C
T ss_pred             CCCCCCCCccEEEEeccccccCCCccccccccCCCcccc-eE-EEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCC
Confidence            34467789999999999987433 233445668899987 64 4678899999999998878878999999988632  2


Q ss_pred             CCeEEcc--------ccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCC
Q psy7040         268 GRWTPAG--------ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTD  339 (716)
Q Consensus       268 ~~~~~~~--------~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~  339 (716)
                      ..|..+.        ........+.|.+|.|++.|.|+|.|.|..|.+.++..+..+...+   .+.+|..+.+...+.+
T Consensus       379 ~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T---~~~~Ps~~~~~~~s~t  455 (536)
T 3fl7_A          379 GECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSI---NQTEPPKVRLEGRSTT  455 (536)
T ss_dssp             CCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEEC---CSCCCCEEEEEECCC-
T ss_pred             CcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEee---cccCCCCCceeeccCC
Confidence            2232221        1224578999999999999999999999988754433333445543   3455666667778889


Q ss_pred             eEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceE
Q psy7040         340 FVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       340 ~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~  418 (716)
                      ++.|+|.+|... ++.|.+|.|+|+..+..  ...........+++|.+|.|++.|.|+|+|.|..|.|++|....+.+
T Consensus       456 SV~LsW~pP~~~-ng~I~~Y~V~y~~~~~~--~~~~~v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~T  531 (536)
T 3fl7_A          456 SLSVSWSIPPPQ-QSRVWKYEVTYRKKGDS--NSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT  531 (536)
T ss_dssp             CCEEEEECCTTT-TTTCSEEEEEEEEC--C--CCCEEEEESSSEEECCSCCSSCEEEEEEEEECC---CEECCCEEEEC
T ss_pred             eEEEEEECCcCC-CCcccEEEEEEEECCCC--ceEEEEcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEEe
Confidence            999999998644 45899999999987643  12223356788999999999999999999999999998887654443

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.83  E-value=2.3e-19  Score=167.90  Aligned_cols=183  Identities=17%  Similarity=0.275  Sum_probs=143.6

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA  300 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a  300 (716)
                      .++.+|.+ +.+.....+++.|+|++|   ++ .+.+|.|+++......+... .......++.|.+|.|++.|.|+|+|
T Consensus         4 ~p~~~P~~-l~~~~~~~~si~l~W~~p---~g-~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A   77 (234)
T 3f7q_A            4 MDLGAPQN-PNAKAAGSRKIHFNWLPP---SG-KPMGYRVKYWIQGDSESEAH-LLDSKVPSVELTNLYPYCDYEMKVCA   77 (234)
T ss_dssp             -CCCCCEE-EEEEECSSSCEEEEEECC---SS-CCCEEEEEEEETTSCGGGCE-EEEESSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCcc-eEEEEcCCCEEEEEEECC---CC-ccceEEEEEEECCCCccceE-EEcCCccEEEECCCCCCCEEEEEEEE
Confidence            46788887 888888999999999987   23 68999999986644322111 11245789999999999999999999


Q ss_pred             EcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc-----eEEEe
Q psy7040         301 VNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI-----WEKCA  375 (716)
Q Consensus       301 ~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-----~~~~~  375 (716)
                      .|..|.+..+..   +.+.+....|.+|.++.+...+.+++.|+|.+|...+ +.+.+|.|+|+..+...     |....
T Consensus        78 ~n~~G~g~~s~~---~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~  153 (234)
T 3f7q_A           78 YGAQGEGPYSSL---VSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETN-GEITAYEVCYGLVNDDNRPIGPMKKVL  153 (234)
T ss_dssp             EETTEECCCCCC---EEEECCCCCCCCCCCCEEEECSSSCEEEECCCCSCCS-SCCCEEEEEEEEBCTTSCBSSCCEECC
T ss_pred             EeCCCcCCCCCe---EEEEcCCCCCCCCCccEEEEecCCEEEEEEcCCCCCC-CceeEEEEEEEECCCCCCccCcceEEE
Confidence            999998776554   3444555778889999999999999999999986644 48999999998765332     33333


Q ss_pred             eecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCC
Q psy7040         376 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP  413 (716)
Q Consensus       376 ~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~  413 (716)
                      .......++.|.+|.+++.|.|+|+|.|..|.|.++..
T Consensus       154 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  191 (234)
T 3f7q_A          154 VDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA  191 (234)
T ss_dssp             CSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEE
T ss_pred             ecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCc
Confidence            33455679999999999999999999999999988763

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.83  E-value=2.2e-18  Score=169.91  Aligned_cols=227  Identities=15%  Similarity=0.152  Sum_probs=170.5

Q ss_pred             ccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeE-EeCCeEEEEEECCCCCCCCccceEEEEE
Q psy7040         184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSN-VHAEGVTLDWKVPDDDGGQPIEKYVVDK  262 (716)
Q Consensus       184 ~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~-~~~~~~~l~W~~p~~~~~~~~~~y~v~~  262 (716)
                      ...|.|.++...|+|.|+|.   ..|.....+.|.|..+|..|.  +.... ....++.+.|.++.+ ++ ....|.+.+
T Consensus        59 ~~~L~i~~v~~~d~G~Y~C~---~~g~~~~~~~L~V~~pP~~P~--l~c~~~~~~~~~~c~W~~~~~-~~-~~~~y~l~~  131 (325)
T 1n26_A           59 GRRLLLRSVQLHDSGNYSCY---RAGRPAGTVHLLVDVPPEEPQ--LSCFRKSPLSNVVCEWGPRST-PS-LTTKAVLLV  131 (325)
T ss_dssp             SSEEEECSCCGGGCEEEEEE---SSSSCSCEEEEEECCCCCCCC--CEEEBSSTTSCEEEEECCSSC-CC-TTCEEEEEE
T ss_pred             cceEEecccchhhCeEeEEE---eCCEEeeeEEEEeccCCCCCc--eeEEeecCCCcEEEEECCCCC-CC-CCceEEEEE
Confidence            57899999999999999999   378888889999999999887  55542 336689999996553 34 357898887


Q ss_pred             EeC-C--CCCe-EEccc-cCcccceEEEcCCC-CCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEee
Q psy7040         263 MDE-A--TGRW-TPAGE-TEGPVTGLEVEGLI-PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF  336 (716)
Q Consensus       263 ~~~-~--~~~~-~~~~~-~~~~~~~~~i~~L~-p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~  336 (716)
                      +.. +  ...| ..+.. ......++.+..+. +++.|.|+|.|.|..|.+... ..  .........|.+|.++.+...
T Consensus       132 ~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~-~~--~~~~~~~v~P~pP~~l~v~~~  208 (325)
T 1n26_A          132 RKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSK-TQ--TFQGCGILQPDPPANITVTAV  208 (325)
T ss_dssp             EEESSSSCEEEEEEEEEETTTTEEEEEECCCTTCCCEEEEEEEEEETTEEEECC-CE--EEETTTCBCCCCCEEEEEEEC
T ss_pred             EEccCCCCCcccccCCCCCCCCCEEEEECCCcccCcEEEEEEEEEcCCCCcccC-cE--EEeeccccCCCCCcceEEEEe
Confidence            653 1  1222 33332 12345788888876 789999999999999976321 11  111122355888999988876


Q ss_pred             eC--CeEEEEecCCCCC-CCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCC
Q psy7040         337 DT--DFVELAWTPPEQN-GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP  413 (716)
Q Consensus       337 ~~--~~i~l~W~~p~~~-~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~  413 (716)
                      ..  +++.|+|.+|... .+..+.+|+|+|+..+...|..... .....++.|.+|.+++.|.|+|+|.|..|.|.+|+.
T Consensus       209 ~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~~~W~~~~~-~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~w  287 (325)
T 1n26_A          209 ARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMV-KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEW  287 (325)
T ss_dssp             TTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEEC-GGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCC
T ss_pred             cCCCCEEEEEECCCCccCCCcEeEEEEEEEEeCCCCCCEEEcc-cCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCC
Confidence            53  5899999997653 3556899999999987778876543 345678999999999999999999999999999988


Q ss_pred             CCceEeec
Q psy7040         414 TAPHIARA  421 (716)
Q Consensus       414 ~~~~~~~~  421 (716)
                      +..+...+
T Consensus       288 S~~~~~~~  295 (325)
T 1n26_A          288 SPEAMGTP  295 (325)
T ss_dssp             CCCEEECC
T ss_pred             CCccceec
Confidence            87766543

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.83  E-value=1.8e-19  Score=174.95  Aligned_cols=183  Identities=15%  Similarity=0.163  Sum_probs=114.6

Q ss_pred             CCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc-CcccceEEE--cCCCCCCeEEEEEE
Q psy7040         223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-EGPVTGLEV--EGLIPNHKYKFRVR  299 (716)
Q Consensus       223 p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~~i--~~L~p~~~y~~~v~  299 (716)
                      ..+|.+ +.+... ..++.|+|++|...+ .++. |.|+++..+...|...... ......+.+  ..|.++..|.|+|+
T Consensus         4 l~~P~n-v~~~~~-n~~~iL~W~pp~~~~-~~v~-Y~V~y~~~~~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV~   79 (306)
T 3s98_A            4 LKSPQK-VEVDII-DDNFILRWNRSDESV-GNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIR   79 (306)
T ss_dssp             ----CC-CEEEEE-TTEEEEECC---------CE-EEEEEEESSCSSCEECTTCSSBSSSEEECCC---CTTSCEEEEEE
T ss_pred             CCCCcE-eEEEEE-CCeEEEEEcCCCCCC-CCeE-EEEEEEECCCCCcEECCCccCCCCCEEEccccccCCCCcEEEEEE
Confidence            456777 787765 667889999876533 3465 9999998877889865322 223445555  45789999999999


Q ss_pred             EEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCC-----CccceEEEEEEeecCCCc-eEE
Q psy7040         300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNG-----GSPIVGYIIEKKEKYSPI-WEK  373 (716)
Q Consensus       300 a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~-----~~~i~~y~v~~~~~~~~~-~~~  373 (716)
                      |.| .|.|.++..........  ..+++|. +.+... .++|.|+|.+|...+     .+.+.+|+|.|+..++.. |..
T Consensus        80 A~n-~~~S~~s~~~~f~~~~~--~~~~pP~-v~~~~~-~~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~~~~~~~~~~  154 (306)
T 3s98_A           80 AEK-ENTSSWYEVDSFTPFRK--AQIGPPE-VHLEAE-DKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERI  154 (306)
T ss_dssp             EEC-SSCEEEEECCCBCHHHH--CBCCCCE-EEEEEC-SSCEEEEEECC---CCCC-----CCEEEEEEEETTTCCCEEE
T ss_pred             EEe-CCcCCCEeeeeEechhh--CccCCCe-EEEEEc-CCEEEEEEECCCCCCcceeccCCcEEEEEEEEECCCCCeEEE
Confidence            999 77665543322211111  2344554 776644 468999999654321     246889999998776443 332


Q ss_pred             EeeecCCCCeEEecCCCCCCeEEEEEEEEe--CCCCCCCCCCCCceE
Q psy7040         374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVN--KGGPGEPSDPTAPHI  418 (716)
Q Consensus       374 ~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n--~~g~~~~s~~~~~~~  418 (716)
                          ......+.|.+|.+++.|.|+|+|.+  ..|.|..|......+
T Consensus       155 ----~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T  197 (306)
T 3s98_A          155 ----ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKT  197 (306)
T ss_dssp             ----EEECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEEC
T ss_pred             ----ecccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEe
Confidence                23467899999999999999999999  678888877654444

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.83  E-value=7.9e-19  Score=160.67  Aligned_cols=181  Identities=18%  Similarity=0.297  Sum_probs=137.3

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCC-CCcEEEecc---cCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE-TGVWIPVGK---TREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~---~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      +.||..+.+.. +.+++.|+|++|. +++.++.+|.|+|+... .+.|.....   ...+.+.+ +|.|++.|.|+|+|.
T Consensus         6 P~~P~~~~~~~-~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~~V~A~   82 (205)
T 1cfb_A            6 PNAPKLTGITC-QADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTFRVIAF   82 (205)
T ss_dssp             CCCCEEEEEEE-CSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEEEEEEE
T ss_pred             CCCCCCcEEEe-cCCEEEEEEECcc-cCCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEEEEEEE
Confidence            44566678888 9999999999985 45677999999998664 356643321   23467777 999999999999999


Q ss_pred             ecCccCCCcc-ccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCC
Q psy7040         131 NKEGESEPLE-TFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENING  209 (716)
Q Consensus       131 ~~~g~~~~s~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  209 (716)
                      |..|.+.++. .....+...                                                            
T Consensus        83 n~~G~~~~s~~~~~~~T~~~------------------------------------------------------------  102 (205)
T 1cfb_A           83 NKIGASPPSAHSDSCTTQPD------------------------------------------------------------  102 (205)
T ss_dssp             ETTEECCCCCCCCCEEECCC------------------------------------------------------------
T ss_pred             ECCccCCCCCCceeEEcCCc------------------------------------------------------------
Confidence            9999988873 333322210                                                            


Q ss_pred             CceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCC--CCCCCccceEEEEEEeCCCCC-eEEccccCcccceEEEc
Q psy7040         210 KDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPD--DDGGQPIEKYVVDKMDEATGR-WTPAGETEGPVTGLEVE  286 (716)
Q Consensus       210 ~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~--~~~~~~~~~y~v~~~~~~~~~-~~~~~~~~~~~~~~~i~  286 (716)
                                 .++.+|.+ +.+.....+++.|+|++|.  ..+| ++.+|.|+++..+... |............+.|.
T Consensus       103 -----------~P~~~P~~-~~~~~~~~~sv~l~W~~p~~~~~ng-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (205)
T 1cfb_A          103 -----------VPFKNPDN-VVGQGTEPNNLVISWTPMPEIEHNA-PNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIA  169 (205)
T ss_dssp             -----------CCSCCCSC-CEEECSSTTCEEEECCCCCGGGTCS-SSCEEEEEEEESSTTCCCEEEEECCTTCCEEEEC
T ss_pred             -----------CCCCCCee-eEeecCCCCeEEEEEECCCccccCC-CceEEEEEEEECCCCCCcEEEEecCCCccEEEEc
Confidence                       13346666 7888888899999999887  4444 6899999998776543 76655444457899999


Q ss_pred             CCCCCCeEEEEEEEEcCCCCCCCCc
Q psy7040         287 GLIPNHKYKFRVRAVNKQGKSEPLT  311 (716)
Q Consensus       287 ~L~p~~~y~~~v~a~n~~g~~~~~~  311 (716)
                      +|.+++.|.|+|+|.|..|.+..+.
T Consensus       170 ~L~p~t~Y~~~V~A~n~~G~g~~ss  194 (205)
T 1cfb_A          170 DQPTFVKYLIKVVAINDRGESNVAA  194 (205)
T ss_dssp             SCCSSCEEEEEEEEEETTEECSSCC
T ss_pred             CCCCCcEEEEEEEEEcCCCcCCCCC
Confidence            9999999999999999999887543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.82  E-value=6.4e-17  Score=171.76  Aligned_cols=386  Identities=13%  Similarity=0.131  Sum_probs=212.4

Q ss_pred             ccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecC-CCCCCC---CCCCcEEEeeeCCeEEEEecCCCCCCCc
Q psy7040         279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKN-PFNQPG---KPGTPEIKDFDTDFVELAWTPPEQNGGS  354 (716)
Q Consensus       279 ~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~-~~~~p~---~p~~~~~~~~~~~~i~l~W~~p~~~~~~  354 (716)
                      ....+.|.++...+.+.|+|.|.|..|..........+.+.. +..+|.   .|...  ....+..+.|.|.....    
T Consensus        68 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~--~~~~g~~v~l~C~~~g~----  141 (523)
T 2rcj_C           68 TSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSS--EELQANKATLVCLISDF----  141 (523)
T ss_pred             CEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcc--cccCCCceEEEEEeccc----
Confidence            345899999999999999999999766321111111222211 111121   11111  11223456677765221    


Q ss_pred             cceEEEEEEeecCCCc---eEEEee-ecCCC-----CeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCC
Q psy7040         355 PIVGYIIEKKEKYSPI---WEKCAQ-TEGDT-----PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVS  425 (716)
Q Consensus       355 ~i~~y~v~~~~~~~~~---~~~~~~-~~~~~-----~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~  425 (716)
                      +.....|.|...+..-   ...... ...+.     ..+.|..+...+...|+|.|.|..|.......  .........+
T Consensus       142 ~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~--~~~~~~~~~~  219 (523)
T 2rcj_C          142 YPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA--PTECSASTKG  219 (523)
T ss_pred             cCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccccccee--eeecCCCCcC
Confidence            1111223333222100   000000 00111     24788888888899999999998775332211  1111122335


Q ss_pred             CcccccccccEEEecCCeEEEEEEEecc-CCC-eEEEEeCCeEeccCCcEEEEeCCC----eEEEEECCCCCCCceeEEE
Q psy7040         426 PYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-TKEWLCNDITIISKDRFKIVNDDK----STKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       426 P~~~~~~~~~~~~~~g~~~~~~~~v~~~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~~~y~~  499 (716)
                      |.+... .....+.+|..+.|.|.+.+. |.+ .+.|++++..+.......+...+.    ...|.|.++..+| |.|+|
T Consensus       220 P~v~~~-~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C  297 (523)
T 2rcj_C          220 PSVFPL-APSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC  297 (523)
T ss_pred             CEEEec-CCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEE
Confidence            554421 122345789999999999887 767 899999987643211111111111    3479999999999 99999


Q ss_pred             EEEcCCCceeeEEEEEEE-EEEEEEeCCC-----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecc------cc
Q psy7040         500 AVKNSWGTDKGTAKVTVL-GCSLKWNPPE-----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN------VD  567 (716)
Q Consensus       500 ~a~n~~g~~~~s~~~~v~-~v~l~W~~p~-----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~------~~  567 (716)
                      .|.|..|.......+.+. ...+.-.+|.     ..+......|.+...+...+.+.+.|++.+........      .+
T Consensus       298 ~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~  377 (523)
T 2rcj_C          298 NVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYN  377 (523)
T ss_pred             EEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCC
Confidence            999999987666555443 1112112221     11223334455543222212345999998765432210      00


Q ss_pred             ----ceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeec-cCCCCCCcccee-------eccceeEEEEEEeeEEEEe
Q psy7040         568 ----YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV-TDKPSAPEGPIQ-------WLLTLTDVTWEISNYLQEL  635 (716)
Q Consensus       568 ----~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v-~~~p~~~~~~~~-------~~~~~v~l~w~i~~y~v~~  635 (716)
                          ....+.|......+.+.|+|.|.|..|.......+.+ ......|. +..       +....+.            
T Consensus       378 g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~-v~~~~~~~~~~~~~~~~------------  444 (523)
T 2rcj_C          378 STYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ-VYTLPPSREEMTKNQVS------------  444 (523)
T ss_pred             CcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCE-EEEeCCChHHccCCceE------------
Confidence                1134777778888999999999998776654444432 11122222 221       1222344            


Q ss_pred             eeeccCcee------eEEEEeCCeEeeecc--------cce---eeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         636 HSSLMPISL------ESQYLMNDKRVTIDN--------VDY---FTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       636 ~~~~~~~~~------~~~W~~~~~~~~~~~--------~~~---~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                        |.|.+.|      .+.|+++|.++....        .+.   ...+.|......|.|.|+|.|.|....
T Consensus       445 --l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~~l~  513 (523)
T 2rcj_C          445 --LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  513 (523)
T ss_pred             --EEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcCCcC
Confidence              4455444      689999999886430        111   133555555557899999999997654

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.82  E-value=2.3e-19  Score=165.82  Aligned_cols=200  Identities=17%  Similarity=0.170  Sum_probs=150.9

Q ss_pred             ecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCC-CCCCeEEEEE
Q psy7040         220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGL-IPNHKYKFRV  298 (716)
Q Consensus       220 ~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~p~~~y~~~v  298 (716)
                      ..+|.+|.+ +.+.....+++.|+|++|...++  ..+|.|+++..... +..+.........+.|.+| .+++.|.|+|
T Consensus         5 g~pP~~P~~-l~~~~~~~~sv~l~W~~p~~~~~--~~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~t~Y~~~V   80 (215)
T 1bqu_A            5 GLPPEKPKN-LSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATHK-FADCKAKRDTPTSCTVDYSTVYFVNIEVWV   80 (215)
T ss_dssp             CCCCCCCEE-EEEEEETTSCCEEEEECCSCCSS--CCEEEEEEEETTEE-CCCEECCSSCTTEEECSSCCCTTSCEEEEE
T ss_pred             CCCCCCCEe-eEeEECCCCcEEEEcCCCCCCCC--CceEEEEEEEcCCC-ccccccccCCcceEEEcCCccccccEEEEE
Confidence            457888887 78888788899999998876543  47999998765432 2222223345689999999 9999999999


Q ss_pred             EEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEee--eCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEee
Q psy7040         299 RAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF--DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ  376 (716)
Q Consensus       299 ~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~--~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~  376 (716)
                      .|.|..|.+.....   .........|.+|.++.+...  +.+++.|+|.+|...+ +.+.+|.|+|+..+...|.....
T Consensus        81 ~A~n~~G~~~s~~~---~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~-~~i~~Y~v~y~~~~~~~~~~~~~  156 (215)
T 1bqu_A           81 EAENALGKVTSDHI---NFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKS-VIILKYNIQYRTKDASTWSQIPP  156 (215)
T ss_dssp             EEEETTEEEECCCE---EECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGG-TSCEEEEEEEEETTCSSCEECCG
T ss_pred             EEEecccCccCCcE---EecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCC-cceEEEEEEEccCCCCCceEecc
Confidence            99999997652211   111112245778888888765  6789999999987654 47899999999887677876543


Q ss_pred             e--cCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCc
Q psy7040         377 T--EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY  427 (716)
Q Consensus       377 ~--~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~  427 (716)
                      .  .....++.|.+|.+++.|.|+|+|.|..|.|.+|+.+..+...+...+|.
T Consensus       157 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~~~P~  209 (215)
T 1bqu_A          157 EDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPS  209 (215)
T ss_dssp             GGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECCCHHH
T ss_pred             ccccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccccCCc
Confidence            2  45678999999999999999999999999998888877666555444443

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.81  E-value=5.1e-19  Score=179.54  Aligned_cols=293  Identities=16%  Similarity=0.118  Sum_probs=188.0

Q ss_pred             eEEecCC-CCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEe-ccCCCeEEE
Q psy7040         383 KGKVLDL-IEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEW  460 (716)
Q Consensus       383 ~~~i~~l-~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~-~~p~~~~~W  460 (716)
                      .+.|.+. ...+.+.|+|.|.|..|..........+..     .|.+.......+.+..|+.+.|.|... +.|.+.+.|
T Consensus        63 ~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~-----~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W  137 (384)
T 3kld_A           63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAY-----LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAW  137 (384)
T ss_dssp             EEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEE-----ECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEE
T ss_pred             EEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEec-----ccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEE
Confidence            3455544 556789999999999885322211111111     112222223457889999999999763 456678999


Q ss_pred             EeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE---EEEEEE--------EEEEEEeCCC--
Q psy7040         461 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT---AKVTVL--------GCSLKWNPPE--  527 (716)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s---~~~~v~--------~v~l~W~~p~--  527 (716)
                      ++++..+....+..+..  ....|.|.++...|.|.|+|.|.|..|.....   ..+.+.        ...+.-..|.  
T Consensus       138 ~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~  215 (384)
T 3kld_A          138 IFNEYPSYQDNRRFVSQ--ETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV  215 (384)
T ss_dssp             EETTEECCCSSSEEECT--TTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEE
T ss_pred             EECCCCCEeeccEEEEc--CCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCce
Confidence            99998775544443322  23469999999999999999999988764321   111111        1112222221  


Q ss_pred             --CCCCCceeeEEEEEEecCCCceeeeEEEccce-eee-eccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee
Q psy7040         528 --DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDK-RVT-IDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  603 (716)
Q Consensus       528 --~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~-~~~-~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~  603 (716)
                        ..+......|.+...+    .|.+.|++.+.. ... .........+.|.++...+.+.|+|.|.|..|.......+.
T Consensus       216 ~~~~G~~v~l~C~~~g~P----~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~  291 (384)
T 3kld_A          216 PAEKGTTVKLECFALGNP----VPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT  291 (384)
T ss_dssp             EEETTSCEEEEEEEEEES----CCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EecCCCcEEEEEEEeecC----CCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence              1223334455554443    344999985432 211 01112236799999999999999999999999776666666


Q ss_pred             ccCCCCC---CccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeecc--cceeeEEEEccCCCC
Q psy7040         604 VTDKPSA---PEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTIDN--VDYFTKITIRPLQRS  674 (716)
Q Consensus       604 v~~~p~~---~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~~--~~~~~~~~i~~l~~~  674 (716)
                      |..+|..   +.......+..+.              |.|.+.|    .+.|+++|..+....  ......|.|.++...
T Consensus       292 v~~~P~~~~~~~~~~v~~g~~v~--------------l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~  357 (384)
T 3kld_A          292 FYAQPNWVQIINDIHVAMEESVF--------------WECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLS  357 (384)
T ss_dssp             EEEEEEEEECCCCEEECTTCCEE--------------EECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGG
T ss_pred             EecCCccccCCCceEecCCCCEE--------------EEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChh
Confidence            6544431   1101111233333              6677776    899999999886541  112358999999999


Q ss_pred             CcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         675 DTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       675 ~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |+|.|+|.|.|.+|....++.|.|..
T Consensus       358 D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          358 DAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             hCEEEEEEEEeCCceEEeceEEEEec
Confidence            99999999999999999999999864

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.81  E-value=1.1e-18  Score=160.58  Aligned_cols=184  Identities=18%  Similarity=0.258  Sum_probs=134.9

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCC---CCCccceEEEEEEcCCCCcEE-EecccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDD---GGEPLEGYLVEKYDPETGVWI-PVGKTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~---~~~~i~~y~v~~~~~~~~~~~-~~~~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      ..||.++.+...+.+++.|+|++|...   .+.++.+|+|+|+..+...+. .......+++.|.+|.|++.|.|+|+|.
T Consensus         5 ~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   84 (211)
T 3p4l_A            5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVT   84 (211)
T ss_dssp             CCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEEEEESSSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEEeCCCceEEEecCcCCCCEEEEEEEEE
Confidence            345556778888999999999987532   135699999999876654332 1223345799999999999999999999


Q ss_pred             ecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCC
Q psy7040         131 NKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGK  210 (716)
Q Consensus       131 ~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  210 (716)
                      |..|.+.++......+..                                                              
T Consensus        85 n~~g~~~~S~~~~~~t~~--------------------------------------------------------------  102 (211)
T 3p4l_A           85 KGRRSSTWSMTAHGTTFE--------------------------------------------------------------  102 (211)
T ss_dssp             ETTEECCCCCCEEEECCC--------------------------------------------------------------
T ss_pred             cCCCCCccceeEeeeccc--------------------------------------------------------------
Confidence            999988776554333221                                                              


Q ss_pred             ceeEEEEEEecCCC-CCCCCeEEeEE--eCCeEEEEEECCCCCCCCccceEEEEEEeCCCC---CeEEccccCcccceEE
Q psy7040         211 DSVEVEVIVLDKPS-PPGGPLKVSNV--HAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG---RWTPAGETEGPVTGLE  284 (716)
Q Consensus       211 ~~~~~~~~v~~~p~-~p~~~~~~~~~--~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~---~~~~~~~~~~~~~~~~  284 (716)
                                ..|. +|.+ +.+...  ..+++.|+|++|...+| ++.+|.|++......   .|... ........+.
T Consensus       103 ----------~~P~~~P~~-~~~~~~~~s~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~  169 (211)
T 3p4l_A          103 ----------LVPTSPPKD-VTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIE-PVVGNRLTHQ  169 (211)
T ss_dssp             ----------CCCCSCCEE-EEEEEETTEEEEEEEEEECCTTCCS-CCCEEEEEEESCTTSCGGGSEEE-EEESSCSEEE
T ss_pred             ----------CCCCCCCcc-eEEEecCCCCCEEEEEECCCCCCCC-CEEEEEEEEEECCCCCCCceEEE-EecCCeeEEE
Confidence                      1333 5655 666666  46799999998876555 799999999876543   22222 1224578999


Q ss_pred             EcCCCCCCeEEEEEEEEcCCCCCCCCccc
Q psy7040         285 VEGLIPNHKYKFRVRAVNKQGKSEPLTTT  313 (716)
Q Consensus       285 i~~L~p~~~y~~~v~a~n~~g~~~~~~~~  313 (716)
                      |.+|.|++.|.|+|+|.|..|.+.++...
T Consensus       170 i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v  198 (211)
T 3p4l_A          170 IQELTLDTPYYFKIQARNSKGMGPMSEAV  198 (211)
T ss_dssp             ECCCCTTCEEEEEEEEEETTEECCCCCCE
T ss_pred             EcCCCCCCEEEEEEEEEcCCccCCCCCCE
Confidence            99999999999999999999998877765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.80  E-value=1.7e-20  Score=210.03  Aligned_cols=477  Identities=13%  Similarity=0.052  Sum_probs=71.9

Q ss_pred             CCeEEecCCCCCcEEEEEEEEEecCccCCCccccceEEe---------cCCC--CcccccccccceecccCCC-------
Q psy7040         109 EPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIA---------RDPY--SKYTSVSSLDSHKRSNQPC-------  170 (716)
Q Consensus       109 ~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~---------~~p~--~~~~~~~~~~~~~~~~~p~-------  170 (716)
                      ...+.|.++++.+.+.|+|++.+..+ ...+........         .++.  .+.......+.|.+...+.       
T Consensus       182 ~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W  260 (772)
T 3v2a_R          182 KKGFTIPSYMISYAGMVFCEAKINDE-SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW  260 (772)
T ss_dssp             TTEEEEEGGGTTTCSEEEEEEEETTE-EEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEE
T ss_pred             CCCeEecCCChhhCeEEEEEEEECCc-eEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEE
Confidence            36799999999999999999997644 222221111111         1111  1112223345577765321       


Q ss_pred             ---CCC----ceEEE--------EecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCC---eEE
Q psy7040         171 ---GSG----MVRKV--------QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP---LKV  232 (716)
Q Consensus       171 ---G~~----~~~~~--------~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~---~~~  232 (716)
                         |..    .....        ........|.|.++...|+|.|+|.|.|..|..+..+.|.|..+|.....+   ...
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~  340 (772)
T 3v2a_R          261 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLV  340 (772)
T ss_dssp             ECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-----------
T ss_pred             ecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcE
Confidence               211    01100        112245689999999999999999999999988888999998877543221   123


Q ss_pred             eEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcc
Q psy7040         233 SNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTT  312 (716)
Q Consensus       233 ~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~  312 (716)
                      ....++.+.|.|.....    +...+.+..  .+.. ...... ......+.|.++...+.+.|+|.|.|..|....+..
T Consensus       341 ~v~~G~~v~l~C~~~~~----p~~~v~W~~--~g~~-l~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~  412 (772)
T 3v2a_R          341 EATVGERVRIPAKYLGY----PPPEIKWYK--NGIP-LESNHT-IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHV  412 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEcCCCcEEEEEEEeee----CCCeEEEEE--CCEe-CCCCce-EccceeEEEecCChhcCceEEEEEEECCcCeEEEEE
Confidence            34567788999986321    222222221  1110 000000 012478899999999999999999998876533322


Q ss_pred             cceEEecCCCCCCCCCCC-cE---EEeeeCCeEEEEecCCCCCCCccceEEEEEE--------------eecCCCceEEE
Q psy7040         313 TASIEAKNPFNQPGKPGT-PE---IKDFDTDFVELAWTPPEQNGGSPIVGYIIEK--------------KEKYSPIWEKC  374 (716)
Q Consensus       313 ~~~~~~~~~~~~p~~p~~-~~---~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~--------------~~~~~~~~~~~  374 (716)
                      .. +.+.   .+|..... +.   .....+..+.|.|.....+....+..|+-.-              .......|...
T Consensus       413 ~~-l~v~---~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (772)
T 3v2a_R          413 VS-LVVY---VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSV  488 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EE-EEEe---cCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCcccccccc
Confidence            21 1111   11111000 00   0012234455555542111000012111000              00000001000


Q ss_pred             -------------------eeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCccccccccc
Q psy7040         375 -------------------AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSD  435 (716)
Q Consensus       375 -------------------~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~  435 (716)
                                         .........+.+.++  .+.+.|+|.|.|..|....+....+.      .+|.+...  ..
T Consensus       489 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~------~~p~i~~~--p~  558 (772)
T 3v2a_R          489 EDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVT------RGPEITLQ--PD  558 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEE------CCceeecc--CC
Confidence                               000011134455554  45788999999998865443222111      13333211  12


Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEE--------------------EeCCCeEEEEECCCCCCCce
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI--------------------VNDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~--------------------~~~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..+........                    ........|.|.++...|.|
T Consensus       559 ~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  638 (772)
T 3v2a_R          559 MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG  638 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCc
Confidence            4477899999999999999999999998866543222111                    11112345999999999999


Q ss_pred             eEEEEEEcCCCceee--EEEEEEE---EEEEEEeCC---CCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec---
Q psy7040         496 IYTLAVKNSWGTDKG--TAKVTVL---GCSLKWNPP---EDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID---  564 (716)
Q Consensus       496 ~y~~~a~n~~g~~~~--s~~~~v~---~v~l~W~~p---~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~---  564 (716)
                      .|+|.|.|..|....  ...+.+.   ...+.-.+.   ...+......|.+...+    .+.+.|++.+.......   
T Consensus       639 ~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P----~p~v~W~k~g~~l~~~~~~~  714 (772)
T 3v2a_R          639 DYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNP----PPQIMWFKDNETLVEDSGIV  714 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccC----CCeEEEEECCeECcCCCCeE
Confidence            999999996654432  2333332   111110000   01122223344443333    34499999876554321   


Q ss_pred             cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCc
Q psy7040         565 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE  612 (716)
Q Consensus       565 ~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~  612 (716)
                      .......+.|.++...+.+.|+|.|.|..|....+..+.|..+|....
T Consensus       715 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~  762 (772)
T 3v2a_R          715 LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN  762 (772)
T ss_dssp             ------------------------------------------------
T ss_pred             EcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCccc
Confidence            112247899999999999999999999999988888888888887554

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.80  E-value=5.9e-18  Score=165.35  Aligned_cols=244  Identities=14%  Similarity=0.064  Sum_probs=166.6

Q ss_pred             ccEEEecCCeEEEEEEEecc-------CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         434 SDIKVRAGSNFEFDINVIGE-------PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~-------p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      .+..+..|..+.|.|.+.+.       |.+.+.|.+++..+... ++.+.. +....|.|.++... .|.|+|.|.|..+
T Consensus        12 ~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~~-~~~~~L~i~~~~~~-~g~Y~C~a~~~g~   88 (303)
T 1i1r_A           12 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTIIN-RTASSVTFTDIASL-NIQLTCNILTFGQ   88 (303)
T ss_dssp             SSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEEE-TTEEEEEECSCCCS-EEEEEEEEEETTT
T ss_pred             CCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeeeC-CcEEEEEEcCcCCC-ceEEEEecccCCC
Confidence            34678999999999999864       78899999999988544 444433 34568999999987 5999999988422


Q ss_pred             cee--eEEEEEEE-----------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecccc
Q psy7040         507 TDK--GTAKVTVL-----------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVD  567 (716)
Q Consensus       507 ~~~--~s~~~~v~-----------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~  567 (716)
                      ...  ....+.+.                 ++.|+|.++.+.+ . +.+|.|+++....    ..|....       ...
T Consensus        89 ~~~~~~~~~l~v~~~P~~P~~l~~~~~~~~~v~l~W~~~~~~~-~-~~~Y~v~~~~~~~----~~~~~~~-------~~~  155 (303)
T 1i1r_A           89 LEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETH-L-ETNFTLKSEWATH----KFADCKA-------KRD  155 (303)
T ss_dssp             EEEEEEEEEEEEECCCCCCEEEEEEEETTSCCEEEEECCSCCS-S-CCEEEEEEEETTE----ECCCEEC-------CSS
T ss_pred             cceEEEEEEEeccCCCCCCeeeEEEECCCCcEEEEccCCCCCC-C-CcCEEEEEEecCC----CCccCCC-------cCC
Confidence            221  12222222                 7899999987653 3 5799999876542    2121110       011


Q ss_pred             ceeEEEEcCC-CCCCeEEEEEEEEcCCCCCccceee-e-----ccCCCCCCccceee--ccceeEEEEE--------Eee
Q psy7040         568 YFTKITIRPL-QRSDTAQYTVTATNSQGKDQVFIEV-V-----VTDKPSAPEGPIQW--LLTLTDVTWE--------ISN  630 (716)
Q Consensus       568 ~~~~~~i~~L-~~~~~y~~~v~a~n~~G~~~~s~~~-~-----v~~~p~~~~~~~~~--~~~~v~l~w~--------i~~  630 (716)
                      ....+.|.+| .+++.|.|+|.|.|..|.+..+... .     .+.+|..+. +..+  +.+++.|+|.        +.+
T Consensus       156 ~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~-v~~~~~~~~sv~l~W~~p~~~~~~i~~  234 (303)
T 1i1r_A          156 TPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLS-VINSEELSSILKLTWTNPSIKSVIILK  234 (303)
T ss_dssp             CTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEE-EECCSSSSSCEEEEEECCGGGGTSCEE
T ss_pred             CceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceE-EEEecCCCCEEEEEECCCCCCCcccEE
Confidence            1378999999 9999999999999999987543222 1     134444333 3323  5689999999        789


Q ss_pred             EEEEeeeeccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCcee---eEEEEEecCC
Q psy7040         631 YLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV---FIEVVVTDKP  702 (716)
Q Consensus       631 y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~---s~~l~v~~~p  702 (716)
                      |.|+|+...     .-.|..-...   ........+.|.+|.+++.|.++|+|.|..|.+.+   |..+.+.++.
T Consensus       235 Y~v~y~~~~-----~~~w~~~~~~---~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~e  301 (303)
T 1i1r_A          235 YNIQYRTKD-----ASTWSQIPPE---DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE  301 (303)
T ss_dssp             EEEEEEETT-----CSSCEECCGG---GGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECCC
T ss_pred             EEEEEEeCC-----CCCceEEccc---cCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCCc
Confidence            999887642     1234321110   00123368999999999999999999999998754   4556666644

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.79  E-value=1.5e-18  Score=173.67  Aligned_cols=304  Identities=13%  Similarity=0.090  Sum_probs=156.8

Q ss_pred             CcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEe-CCeEEEEEECCCC-C-CCCccceEEEEEEeCCCCCeE
Q psy7040         195 ADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVH-AEGVTLDWKVPDD-D-GGQPIEKYVVDKMDEATGRWT  271 (716)
Q Consensus       195 ~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~-~~~~~l~W~~p~~-~-~~~~~~~y~v~~~~~~~~~~~  271 (716)
                      -..|.+++.+.|..|....... .  ..|.||.+ +.+.... .+++.|+|++|.. + .+..+..|.++++..+...|.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~-~--v~~~pP~n-l~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~~w~   82 (380)
T 3lb6_C            7 AVGCLYTFLISTTFGCTSSSDT-E--IKVNPPQD-FEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWK   82 (380)
T ss_dssp             ---------------------------CCCCCEE-EEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCSSCE
T ss_pred             ehhhhhhheeecccccccCCcc-c--ccCCcCCc-eEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCCcce
Confidence            3457778888888876422211 1  14788887 7887666 5889999998765 2 223578999999988777898


Q ss_pred             EccccCcccceEEEcCCCCCCeEEEEEEEEcC----CCCCCCCcccceEEecCCC-CCCCCCCCcEEEeeeCCeEEEEec
Q psy7040         272 PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNK----QGKSEPLTTTASIEAKNPF-NQPGKPGTPEIKDFDTDFVELAWT  346 (716)
Q Consensus       272 ~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~----~g~~~~~~~~~~~~~~~~~-~~p~~p~~~~~~~~~~~~i~l~W~  346 (716)
                      ......    .....++..+..|.|+|+|.|.    .|.+.++..+..+....+. .+|.+|.++.+.......+.++|+
T Consensus        83 ~~~~~~----~~~~~~~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~l~csW~  158 (380)
T 3lb6_C           83 TIITKN----LHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWK  158 (380)
T ss_dssp             EEEESS----SEEEEECCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTEEEEEEE
T ss_pred             EEEecc----EEEEEeecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECCCcEEEEEEc
Confidence            776541    2233456669999999999975    6777767666555544443 446689999999999999999999


Q ss_pred             CCCCCCCccceEEEEEEeecCCCceEEEee---ecCCCCeEEec--CCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeec
Q psy7040         347 PPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ---TEGDTPKGKVL--DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       347 ~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~~~~~i~--~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~  421 (716)
                      ++...  +...+|.++|+..+...+..+..   ..+....+.+.  ++...+.|.|+|.|.|..|.+..+..  .+....
T Consensus       159 p~~~~--~~~~~Y~l~y~~~~~~~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~s~~~--~~~~~~  234 (380)
T 3lb6_C          159 PGIGV--LLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYF--TFQLQN  234 (380)
T ss_dssp             CC--------CCEEEEEECTTCSSCEECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CCCEEE--EECGGG
T ss_pred             CCCCC--CCCccEEEEEEECCCCccccCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeeccccE--EEcHHH
Confidence            85432  24678999998765444444321   11222245555  56778899999999998776543211  011100


Q ss_pred             --CCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         422 --KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       422 --~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                        .+.||.                 .                                      +.+......       
T Consensus       235 ~v~p~pP~-----------------~--------------------------------------l~v~~~~~~-------  252 (380)
T 3lb6_C          235 IVKPLPPV-----------------Y--------------------------------------LTFTRESSC-------  252 (380)
T ss_dssp             SCCCCCCE-----------------E--------------------------------------EEEC------------
T ss_pred             cccCCCCc-----------------e--------------------------------------EEEEEcCCC-------
Confidence              112221                 0                                      111110000       


Q ss_pred             EEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcC-CC
Q psy7040         500 AVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRP-LQ  578 (716)
Q Consensus       500 ~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~-L~  578 (716)
                                        ++.|+|++|...++..+.+|+|+|+...     ..|.....  .        ..+.+.+ |+
T Consensus       253 ------------------~l~l~W~~P~~~~~~~~l~Yev~y~~~~-----~~w~~~~~--~--------~~~~l~~~L~  299 (380)
T 3lb6_C          253 ------------------EIKLKWSIPLGPIPARCFDYEIEIREDD-----TTLVTATV--E--------NETYTLKTTN  299 (380)
T ss_dssp             --------------------CEEEECCSSSCCSTTEEEEECC-------------CCEE--S--------SSCC------
T ss_pred             ------------------eEEEEECCCCCCCCcceEEEEEEEEeCC-----CCceEecc--c--------ceEEEeCccC
Confidence                              7889999987655556899999998853     34543211  1        3467888 99


Q ss_pred             CCCeEEEEEEEEcC-----CC-CCccceeeecc
Q psy7040         579 RSDTAQYTVTATNS-----QG-KDQVFIEVVVT  605 (716)
Q Consensus       579 ~~~~y~~~v~a~n~-----~G-~~~~s~~~~v~  605 (716)
                      +++.|.|+|+|...     .| .|++|..+.+.
T Consensus       300 p~t~Y~~qVRa~~~~~~~~~g~WSeWS~~~~~~  332 (380)
T 3lb6_C          300 ETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWE  332 (380)
T ss_dssp             ------CCEEEEECTTTCSSCCCCCCCCC----
T ss_pred             CCcEEEEEEEEEEcccCCCCCCCCCCCCCEEEe
Confidence            99999999999943     22 25556655543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.79  E-value=3.5e-18  Score=167.53  Aligned_cols=258  Identities=18%  Similarity=0.202  Sum_probs=162.8

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEE-e-CCCeEEEEECCCCC-CCceeEEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-N-DDKSTKLKVFDSKR-GDSGIYTLAV  501 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~-~-~~~~~~l~i~~l~~-~~~~~y~~~a  501 (716)
                      +|.+.. .+.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+... ++.+. . .+....|.|.++.. .|.|.|+|.|
T Consensus         6 ~P~~~~-~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a   83 (304)
T 2yd9_A            6 PPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECVA   83 (304)
T ss_dssp             CCEEEE-CCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred             CCeeee-cCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence            555542 355788999999999999999999999999999887544 33333 2 33457899999997 9999999999


Q ss_pred             EcCCCceeeEEEEEEEE--------EEEEEeCCC---CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecc-----
Q psy7040         502 KNSWGTDKGTAKVTVLG--------CSLKWNPPE---DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN-----  565 (716)
Q Consensus       502 ~n~~g~~~~s~~~~v~~--------v~l~W~~p~---~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~-----  565 (716)
                      .|..|.......+.+..        ..+.-.+..   ..+......|.+.    +.+.+.+.|++.+........     
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~----g~p~~~v~W~k~~~~~~~~~~~~~~~  159 (304)
T 2yd9_A           84 QNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS----GNPDPEITWFKDFLPVDPSASNGRIK  159 (304)
T ss_dssp             ECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEE----CSSCCEEEEEETTEECCGGGGTTSEE
T ss_pred             ECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECc----cCCCCeEEEEECCEECcCCCCcceEE
Confidence            99999877777777761        222211110   1122222333332    334456999998765432110     


Q ss_pred             ccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccc-eeeecc---CCCCC---CccceeeccceeEEEEEEeeEEEEeeee
Q psy7040         566 VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF-IEVVVT---DKPSA---PEGPIQWLLTLTDVTWEISNYLQELHSS  638 (716)
Q Consensus       566 ~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s-~~~~v~---~~p~~---~~~~~~~~~~~v~l~w~i~~y~v~~~~~  638 (716)
                      ......+.|.++...+.+.|+|.|.|..|..... ..+.|.   .+|..   |.......+..+.              |
T Consensus       160 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~--------------l  225 (304)
T 2yd9_A          160 QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVN--------------I  225 (304)
T ss_dssp             ECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEE--------------E
T ss_pred             eCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEE--------------E
Confidence            1123579999999999999999999998865433 233332   22211   1101112234444              5


Q ss_pred             ccCcee----eEEEEeCCeEeeecc--cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCC
Q psy7040         639 LMPISL----ESQYLMNDKRVTIDN--VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA  704 (716)
Q Consensus       639 ~~~~~~----~~~W~~~~~~~~~~~--~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~  704 (716)
                      .|.+.|    .+.|+++|..+....  ......|.|.++  .|+|.|+|.|.|..|....++.|.|..++..
T Consensus       226 ~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  295 (304)
T 2yd9_A          226 TCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPKA  295 (304)
T ss_dssp             EEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-------
T ss_pred             EEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCccc
Confidence            555555    899999999887652  223356777776  5899999999999999999999999886653

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.79  E-value=4.9e-18  Score=154.67  Aligned_cols=176  Identities=18%  Similarity=0.305  Sum_probs=134.9

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA  300 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a  300 (716)
                      ..| +|.+ +.+.....+++.|+|++|..   ..+.+|.|++...+...+............+.|.+|.|++.|.|+|.|
T Consensus        22 ~~P-~P~~-l~~~~~~~~sv~lsW~~p~~---~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   96 (203)
T 2gee_A           22 EVP-QPTD-LSFVDITDSSIGLRWTPLNS---STIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYT   96 (203)
T ss_dssp             CCC-CCEE-EEEECCTTTCEEEEEECCSS---SSCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEE
T ss_pred             cCc-CCCc-cEEEecCCCEEEEEecCCCC---CCccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEEEEEE
Confidence            345 5665 78888889999999998752   368999999987765543333333355789999999999999999999


Q ss_pred             EcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCC
Q psy7040         301 VNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGD  380 (716)
Q Consensus       301 ~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~  380 (716)
                      .|..|.+.+...   ...   ..+| +|.++.+...+.+++.|+|.+|..   +.+.+|.|+|+................
T Consensus        97 ~~~~g~s~~~~~---~t~---~~~p-~P~~l~~~~~~~~sv~l~W~~p~~---~~i~~Y~v~~~~~~~~~~~~~~~~~~~  166 (203)
T 2gee_A           97 VKNGGESTPTTL---TQQ---TAVP-PPTDLRFTNIGPDTMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPS  166 (203)
T ss_dssp             ESSSCBCCCEEE---EEE---CCCC-CCEEEEEEEEETTEEEEEEECCSS---CCCSEEEEEEEETTCGGGCEEEEECTT
T ss_pred             EeCCCccccEee---eec---CCCc-CCCceEEEEcCCCEEEEEEcCCCC---CCccEEEEEEEECCCCCccEEEEcCCC
Confidence            998887654432   221   1334 788999999999999999999742   378999999998553332233344677


Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCC
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  411 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s  411 (716)
                      ..++.|.+|.|++.|.|+|+|.|..|.|.+.
T Consensus       167 ~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  197 (203)
T 2gee_A          167 DNAVVLTNLLPGTEYVVSVSSVYEQHESTPL  197 (203)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             cCEEEECCCCCCCEEEEEEEEecCCCcCCCe
Confidence            8999999999999999999999999887653

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.79  E-value=1.7e-18  Score=176.69  Aligned_cols=290  Identities=10%  Similarity=-0.008  Sum_probs=161.3

Q ss_pred             eEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEe
Q psy7040         383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  462 (716)
Q Consensus       383 ~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~  462 (716)
                      ++.|.++...+.+.|.|.|.|..|....   .....+.   .+|.+..  .....+..+....|.|.+.|.|.|.+.|++
T Consensus       104 sL~I~~v~~~D~G~Y~C~a~N~~g~~~~---~~~l~V~---~~p~~~~--~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k  175 (423)
T 3qs7_E          104 SMVILKMTETQAGEYLLFIQSEATNYTI---LFTVSIR---NTLLYTL--RRPYFRKMENQDALVCISESVPEPIVEWVL  175 (423)
T ss_dssp             EEEESSCCSSSCSEEEEEEEC--CEEEE---EEEEEEC--------CE--EEEEEEECSSSSCEEEEEEESSCCEEEEEE
T ss_pred             EEEEeecCcccCEEEEEEEEcCCCcEEE---EEEEEEe---cCccccc--cCCcEeccCCceEEEEEEeeecCCeEEEEE
Confidence            5789999999999999999998774321   1111111   1333211  112234557777899999999999999999


Q ss_pred             CCeEeccCCc---EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE-EEEEEEEEEEEEeCC---CCCCCCcee
Q psy7040         463 NDITIISKDR---FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTVLGCSLKWNPP---EDDGGAPIE  535 (716)
Q Consensus       463 ~~~~~~~~~~---~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s-~~~~v~~v~l~W~~p---~~~~~~~i~  535 (716)
                      ++........   ..+...  .     .-+...+.|.|+|.|.|..|..... ..+.+.. ...+.++   ...+.....
T Consensus       176 ~~~~~~~~~~~~~~~~~~~--~-----~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~-~p~~~~~~~~v~~G~~v~L  247 (423)
T 3qs7_E          176 CDSQGESCKEESPAVVKKE--E-----KVLHELFGTDIRCCARNELGRECTRLFTIDLNQ-TPQTTLPQLFLKVGEPLWI  247 (423)
T ss_dssp             C-------------CEEEC--C-----SEECCCCSSCEEEEEECSSCEEEEECEEEESSS-CCCSSTTEEEEETTSCEEE
T ss_pred             CCCCCcccccccccccccc--c-----eEEecccCeEEEEEEEcCCCCcceeeEEEEEec-CCccCCCceEEeCCCeEEE
Confidence            8765421100   001110  0     1125778999999999999976442 2333220 0000000   011222233


Q ss_pred             eEEEEEEecCCCceeeeEEEccceeeeec------c-----ccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeec
Q psy7040         536 YYMVEKMETDTGKVLIKWIRTNDKRVTID------N-----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  604 (716)
Q Consensus       536 ~y~v~~~~~~~~~~~~~w~~~~~~~~~~~------~-----~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v  604 (716)
                      .|.+...   .+.+.+.|++.+.......      .     ......+.|.++...+.+.|+|.|.|.   ...+..+.|
T Consensus       248 ~C~~~g~---~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V  321 (423)
T 3qs7_E          248 RCKAVHV---NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTI  321 (423)
T ss_dssp             EEEEEES---SSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEE
T ss_pred             EEEEEcC---CCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEE
Confidence            4444321   2334499999876542110      0     111246999999999999999999997   333344445


Q ss_pred             cCCCCC---C--ccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeecccc--eeeEEEEccCCC
Q psy7040         605 TDKPSA---P--EGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTIDNVD--YFTKITIRPLQR  673 (716)
Q Consensus       605 ~~~p~~---~--~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~~~~--~~~~~~i~~l~~  673 (716)
                      ..+|..   +  ..+....+..+.              |.|.+.|    .+.|+++|..+......  ....+.+..+..
T Consensus       322 ~~~p~i~~~~~~~~~~v~~G~~v~--------------l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~  387 (423)
T 3qs7_E          322 VEKGFINATNSSEDYEIDQYEEFC--------------FSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHK  387 (423)
T ss_dssp             ESSCEEEEC---CEECCCTTCCCC--------------EEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCT
T ss_pred             EeCCcceEcCCCccEEecCCCeEE--------------EEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEeccc
Confidence            544421   1  001111233444              5566655    89999999998765211  112232367788


Q ss_pred             CCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCC
Q psy7040         674 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP  708 (716)
Q Consensus       674 ~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~p  708 (716)
                      .|+|.|+|.|.|..|....++.|.|...|++|.++
T Consensus       388 ~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~~~  422 (423)
T 3qs7_E          388 HQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHHH  422 (423)
T ss_dssp             TCCSCEEEEEEETTEEEEEEEEEC-----------
T ss_pred             ccCEEEEEEEEcCCceEEEEEEEEEecCCcccccC
Confidence            99999999999999999999999999999999765

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.79  E-value=2.9e-18  Score=179.82  Aligned_cols=377  Identities=11%  Similarity=0.024  Sum_probs=203.0

Q ss_pred             cEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCC-CCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEE
Q psy7040         185 TKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS-PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKM  263 (716)
Q Consensus       185 ~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~-~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~  263 (716)
                      .+|.|.+++..|+|.|+|.|.|..|.......+.+...+. .+..|  .....+..+.|.|.+.    |.|.-.+.+...
T Consensus       103 ~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v~~~~~~~~~~p--~~~~~~~~~~L~C~a~----G~P~P~i~W~~~  176 (527)
T 3qs9_E          103 VSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP--YFRKMENQDALVCISE----SVPEPIVEWVLC  176 (527)
T ss_dssp             EEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEEEE--EEEECSSSSCEEEEEE----ESSCCEEEEEEC
T ss_pred             EEEEECcCChhhCeeEEEEEEeccccEEEEEEEEECCceeeccCCC--cEEecCCceEEEEEEc----eecCCeEEEEEC
Confidence            4699999999999999999999988877777766652111 11111  1122345567788752    223333333221


Q ss_pred             eCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEE
Q psy7040         264 DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVEL  343 (716)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l  343 (716)
                      ........   .............+.+.+.+.|+|.|.|..|.....  ...+.+..  .+..+|.  .+....+..+.|
T Consensus       177 ~~~~~~~~---~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~--~~~l~V~~--~p~~~p~--~~~v~~G~~v~L  247 (527)
T 3qs9_E          177 DSQGESCK---EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR--LFTIDLNQ--TPQTTLP--QLFLKVGEPLWI  247 (527)
T ss_dssp             ----------------CEEECCSEECCCCSSCEEEEEECSSCEEEEE--CEEEESSS--CCCCSCC--EEEECTTSCEEE
T ss_pred             CCCCcccc---ccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccce--EEEEEEec--cCccCCC--ceEEeCCCeEEE
Confidence            11110000   000011112223356788899999999988865331  11222221  1111333  233334556666


Q ss_pred             EecCC-CCCCCccceEEEEEEeecCCC----ceEEEeee-----cCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCC
Q psy7040         344 AWTPP-EQNGGSPIVGYIIEKKEKYSP----IWEKCAQT-----EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP  413 (716)
Q Consensus       344 ~W~~p-~~~~~~~i~~y~v~~~~~~~~----~~~~~~~~-----~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~  413 (716)
                      .|... ..    +.  ..|.|...+..    ........     ......+.|.++...+.+.|+|.|.|.  .   + .
T Consensus       248 ~C~~~~g~----p~--p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~--~---~-~  315 (527)
T 3qs9_E          248 RCKAVHVN----HG--FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH--P---S-Q  315 (527)
T ss_dssp             EEEEEESS----SC--CCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE--E---E-E
T ss_pred             EEEEccCC----CC--eEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC--C---C-c
Confidence            66652 11    11  11222222210    01000000     011235889999999999999999886  1   1 1


Q ss_pred             CCceEeecCCCCCccccc-ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCC
Q psy7040         414 TAPHIARAKKVSPYINRD-QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG  492 (716)
Q Consensus       414 ~~~~~~~~~~~~P~~~~~-~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~  492 (716)
                      .....+   ..+|.+... ....+.+..|..+.|.|.+.+.|.+.+.|++++..+.....+.    .....|.|.++...
T Consensus       316 ~~~L~V---~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~  388 (527)
T 3qs9_E          316 SALVTI---VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKH  388 (527)
T ss_dssp             EEEEEE---C--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCTT
T ss_pred             eEEEEE---EccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc----cCCcEEEEecCCcc
Confidence            111111   123333211 1234667889999999999999999999999999886554422    13457999999999


Q ss_pred             CceeEEEEEEcCCCceeeEEEEEEE---EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeee-------
Q psy7040         493 DSGIYTLAVKNSWGTDKGTAKVTVL---GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVT-------  562 (716)
Q Consensus       493 ~~~~y~~~a~n~~g~~~~s~~~~v~---~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~-------  562 (716)
                      |.|.|+|.|.|..|....++.+.|.   .+...   +   .+. ...|.+.    +.+.|.+.|++.+.....       
T Consensus       389 D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~---~---~~~-~l~C~a~----g~P~p~i~W~~~~~~~~~~~~~~~~  457 (527)
T 3qs9_E          389 QPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAE---A---SAS-QASCFSD----GYPLPSWTWKKCSDKSPNCTEEITE  457 (527)
T ss_dssp             CCSCEEEEEEETTEEEEEEEEEC--CCCEEEEC---C---CCE----EEEE----CSSCCEEEEECCC-----CCCCCCC
T ss_pred             cCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEe---C---CCC-EEEEEEE----EEcCCeEEEEECCCCcCCCcccccc
Confidence            9999999999999988887777776   22211   1   122 2244443    344556999865432210       


Q ss_pred             ---------eccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccC
Q psy7040         563 ---------IDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  606 (716)
Q Consensus       563 ---------~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~  606 (716)
                               ...........+.-....+.+.|+|.|.|..|.......+.|+.
T Consensus       458 ~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~  510 (527)
T 3qs9_E          458 GVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG  510 (527)
T ss_dssp             CEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC----
T ss_pred             ccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCC
Confidence                     00000112223333334589999999999999887776665544

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.79  E-value=1.9e-17  Score=162.39  Aligned_cols=285  Identities=13%  Similarity=0.097  Sum_probs=167.1

Q ss_pred             CCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEc
Q psy7040         223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVN  302 (716)
Q Consensus       223 p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n  302 (716)
                      ..+|.+ +.+......++.|+|++|..........|.+.+...    |....    ....+.+.+|.++..|.|+|+|..
T Consensus         4 ~~pP~n-l~~~~~~~~~v~l~W~pP~~~~~~~~~~Y~v~~~~~----~~~~~----~~~~~~~~~~~~~~~y~~~V~a~~   74 (314)
T 3bpo_C            4 QPPVTN-LSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDK----QDKKI----APETRRSIEVPLNERICLQVGSQC   74 (314)
T ss_dssp             CCCCEE-EEEEEETTTEEEEEEECCSSCCCSSCCCEEECCC------CCCEE----ESSSEEEEECCCSSCEEEEEEECC
T ss_pred             CCCCcc-eEEEeCCceEEEEEEcCCCCCCCCceEEEEEEeccc----CceEe----ccccEEEEEEcCCCcEEEEEEEEe
Confidence            356776 888887888999999997765233467888876432    21111    124456778999999999999965


Q ss_pred             -CCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEee--ecC
Q psy7040         303 -KQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ--TEG  379 (716)
Q Consensus       303 -~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~  379 (716)
                       ..|.+.++.............+|.+|.++.+.......+.++|.++... + .+.+|.|+|+..+...+..+..  ...
T Consensus        75 ~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~~~~-~-~~~~Y~l~y~~~~~~~~~~C~~~~~~~  152 (314)
T 3bpo_C           75 STNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNT-S-PDTNYTLYYWHRSLEKIHQCENIFREG  152 (314)
T ss_dssp             ---------CCEEEEECCCCC-CCSSCEEEEEEEETTTEEEEEEECCC-----CCCCEEEEEEESSCSSCEECCCEEEET
T ss_pred             cCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEECCCCeEEEEECCCCCC-C-CCccEEEEEEeCCCCccccCcCeecCC
Confidence             4444444444321221222345668999999988889999999997643 2 4789999987655444544432  223


Q ss_pred             CCCeEEecCCC----CCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCC
Q psy7040         380 DTPKGKVLDLI----EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI  455 (716)
Q Consensus       380 ~~~~~~i~~l~----~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~  455 (716)
                      ....+.+..+.    ..+.|.|+|.|.|..|.+..+...........+.+|.                 .+.+       
T Consensus       153 ~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~~~~~~~~~~v~P~pP~-----------------~l~~-------  208 (314)
T 3bpo_C          153 QYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPH-----------------IKNL-------  208 (314)
T ss_dssp             TEEEEEEECCC--------CCEEEEEEETTSCSCCEEEEECSSSSEECCCCE-----------------EEEE-------
T ss_pred             CeEEEEECCCCccccceeEEEEEEEEEcCCCceecccEEEehhheEeeCCCC-----------------EEEE-------
Confidence            34567777665    3678999999999988764331100000000111111                 1111       


Q ss_pred             CeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCcee
Q psy7040         456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIE  535 (716)
Q Consensus       456 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~  535 (716)
                                                   .+   ...                         ++.|+|++|...++. +.
T Consensus       209 -----------------------------~~---~~~-------------------------~l~lsW~~P~~~~~~-~l  230 (314)
T 3bpo_C          209 -----------------------------SF---HND-------------------------DLYVQWENPQNFISR-CL  230 (314)
T ss_dssp             -----------------------------EE---ETT-------------------------EEEEEEECCTTCCGG-GE
T ss_pred             -----------------------------EE---cCC-------------------------cEEEEEeCCCccCCc-eE
Confidence                                         00   001                         899999998753333 68


Q ss_pred             eEEEEEEecCCCceeeeEEEccce------eeeeccccceeEEEEcCCCCCCeEEEEEEEEcC------CC-CCccceee
Q psy7040         536 YYMVEKMETDTGKVLIKWIRTNDK------RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS------QG-KDQVFIEV  602 (716)
Q Consensus       536 ~y~v~~~~~~~~~~~~~w~~~~~~------~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~------~G-~~~~s~~~  602 (716)
                      .|+|+|+....    ..|......      ............+.|.+|++++.|.|+|+|.+.      .| .|.+|..+
T Consensus       231 ~Yev~y~~~~~----~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qVra~~~~~~~~~~g~WS~WS~~~  306 (314)
T 3bpo_C          231 FYEVEVNNSQT----ETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEM  306 (314)
T ss_dssp             EEEEEEEC--C----CCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEEEEEECTTTSCCCCCCCCCCCCE
T ss_pred             EEEEEEEECCC----CcceEEecccccccccccccccCCceEEEEccCCCCCEEEEEEEeeecccccCCCCeeCCCCCCe
Confidence            99999998776    556431100      000000112488999999999999999999985      34 36666655


Q ss_pred             ec
Q psy7040         603 VV  604 (716)
Q Consensus       603 ~v  604 (716)
                      .+
T Consensus       307 ~~  308 (314)
T 3bpo_C          307 SI  308 (314)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.79  E-value=5e-18  Score=172.60  Aligned_cols=293  Identities=14%  Similarity=0.141  Sum_probs=191.5

Q ss_pred             CeEEecCCCC-CCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEE-eccCCCeEE
Q psy7040         382 PKGKVLDLIE-GNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTKE  459 (716)
Q Consensus       382 ~~~~i~~l~~-~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v-~~~p~~~~~  459 (716)
                      ..+.|.++.. .+.+.|+|.|.|..|..........+..     +|.+.......+.+.+|+.+.|.|.+ .+.|.+.+.
T Consensus        61 ~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~-----~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~  135 (382)
T 1cs6_A           61 GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGF-----LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYR  135 (382)
T ss_dssp             TEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEE-----ECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEE
T ss_pred             CeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeec-----cccccccCCCceEEecCCcEEEEeCCCCCCCCcEEE
Confidence            4678888775 7889999999998775322111111111     22222233456789999999999986 567889999


Q ss_pred             EEeCCeEec--cCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE-----EEEEEE-------EEEEEEeC
Q psy7040         460 WLCNDITII--SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT-----AKVTVL-------GCSLKWNP  525 (716)
Q Consensus       460 W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s-----~~~~v~-------~v~l~W~~  525 (716)
                      |++++..+.  ...+..+  ......|.|.++...|.|.|+|.|.|..|.....     ..+.+.       ...+....
T Consensus       136 W~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~  213 (382)
T 1cs6_A          136 WLLNEFPNFIPADGRRFV--SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKF  213 (382)
T ss_dssp             EEESSTTCBCCCCSSEEE--CTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECC
T ss_pred             EEECCCccccccCceEEE--ecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccC
Confidence            999986643  2233322  2234579999999999999999999988643322     222221       12222221


Q ss_pred             CC----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCcccee
Q psy7040         526 PE----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE  601 (716)
Q Consensus       526 p~----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~  601 (716)
                      +.    ..+......|.+...+    .+.+.|++.+..... ........+.|.++...+.+.|+|.|.|..|.......
T Consensus       214 ~~~~~~~~G~~v~l~C~~~g~p----~~~i~W~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  288 (382)
T 1cs6_A          214 PADTYALTGQMVTLECFAFGNP----VPQIKWRKLDGSQTS-KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR  288 (382)
T ss_dssp             CSEEEEETTCCEEEECEEEEES----CCEEEEEECCSCCSC-CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCceEEeCCCeEEEEEEEccCC----CCEEEEEECCccccc-EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            21    1122323445444333    344999987654322 12233578999999999999999999999987665555


Q ss_pred             eeccCCCCCC---ccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeecc--cceeeEEEEccCC
Q psy7040         602 VVVTDKPSAP---EGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTIDN--VDYFTKITIRPLQ  672 (716)
Q Consensus       602 ~~v~~~p~~~---~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~~--~~~~~~~~i~~l~  672 (716)
                      +.|..+|...   .......+..+.              |.|.+.|    .+.|+++|..+....  ......|.|.++.
T Consensus       289 l~V~~~p~~~~~~~~~~~~~g~~~~--------------l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~  354 (382)
T 1cs6_A          289 IIIHAQPDWLDVITDTEADIGSDLR--------------WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLV  354 (382)
T ss_dssp             EEEEEEEEEEECCCCEEEETTCCEE--------------EECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCC
T ss_pred             EEEecCCCcccCCCccEEcCCCeEE--------------EEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCC
Confidence            5565544311   101111233343              5666665    899999999886541  1122589999999


Q ss_pred             CCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         673 RSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       673 ~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      ..|+|.|+|.|.|..|....++.|.|..
T Consensus       355 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~a  382 (382)
T 1cs6_A          355 LEDSGMYQCVAENKHGTVYASAELTVQA  382 (382)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cccCEEEEEEEEeCCCeEEEEEEEEEeC
Confidence            9999999999999999999999998863

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.78  E-value=4.4e-18  Score=172.61  Aligned_cols=308  Identities=17%  Similarity=0.176  Sum_probs=188.1

Q ss_pred             ccEEEEecc-ccCcceEEEEEEEeCCCCc-eeEEEEEEecCCCCCCCC-eEEeEEeCCeEEEEEECCCCCCCCccceEEE
Q psy7040         184 NTKLGVRMA-QRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV  260 (716)
Q Consensus       184 ~~~l~i~~l-~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p~~p~~~-~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v  260 (716)
                      +..|.|.+. +..|+|.|+|.|.|..|.. +..+.+.+...+.....+ ..+....+..+.|.|.++...   +...|.+
T Consensus        61 ~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~---~~~~~~W  137 (384)
T 3kld_A           61 DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHS---GELSYAW  137 (384)
T ss_dssp             TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEE---SCEEEEE
T ss_pred             CCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCC---CCeEEEE
Confidence            456777776 8899999999999999973 344555554433222111 234455788899999753211   1222332


Q ss_pred             EEEeC---CCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecC----CCCCC----CCCC
Q psy7040         261 DKMDE---ATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKN----PFNQP----GKPG  329 (716)
Q Consensus       261 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~----~~~~p----~~p~  329 (716)
                      .....   .......    ......+.|.++...+.+.|+|.|.|..|..........+....    ....|    ..|.
T Consensus       138 ~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~  213 (384)
T 3kld_A          138 IFNEYPSYQDNRRFV----SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE  213 (384)
T ss_dssp             EETTEECCCSSSEEE----CTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCS
T ss_pred             EECCCCCEeeccEEE----EcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCC
Confidence            22110   0111111    12245799999999999999999999876432111111111100    00000    0111


Q ss_pred             CcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCC
Q psy7040         330 TPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  409 (716)
Q Consensus       330 ~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~  409 (716)
                        .+....+..+.|.|.....    +...  +.|...+................+.|.++...+.+.|+|.|.|..|...
T Consensus       214 --~~~~~~G~~v~l~C~~~g~----P~p~--i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  285 (384)
T 3kld_A          214 --TVPAEKGTTVKLECFALGN----PVPT--ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNV  285 (384)
T ss_dssp             --EEEEETTSCEEEEEEEEEE----SCCE--EEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             --ceEecCCCcEEEEEEEeec----CCCc--EEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence              1222345667777765211    2221  2332221110000001123345799999999999999999999988643


Q ss_pred             CCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCC
Q psy7040         410 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS  489 (716)
Q Consensus       410 ~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l  489 (716)
                      .+..   ..+.   .+|.+. ..+.+..+..|..+.|.|.+.|.|.+.+.|++++..+....++.+..    ..|.|.++
T Consensus       286 ~~~~---l~v~---~~P~~~-~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~----~~L~i~~v  354 (384)
T 3kld_A          286 AKGQ---LTFY---AQPNWV-QIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ----GTLNITIV  354 (384)
T ss_dssp             EEEE---EEEE---EEEEEE-ECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEET----TEEEESSC
T ss_pred             EEEE---EEEe---cCCccc-cCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeC----CEEEEeec
Confidence            2211   1111   134332 22456788999999999999999999999999999987777776532    28999999


Q ss_pred             CCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         490 KRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       490 ~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      ...|.|.|+|.|.|..|....++.+.|.
T Consensus       355 ~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          355 NLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence            9999999999999999999888887763

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.78  E-value=1.2e-17  Score=149.98  Aligned_cols=173  Identities=21%  Similarity=0.369  Sum_probs=131.1

Q ss_pred             EecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEE
Q psy7040         219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRV  298 (716)
Q Consensus       219 v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v  298 (716)
                      +..+|.+|.+ +.+.....+++.|+|++|..    .+.+|.|+++..+ ..+.... .......+.+.+|.|++.|.|+|
T Consensus         3 ~~t~p~~P~~-l~~~~~~~~sv~l~W~~p~~----~i~~Y~v~~~~~~-~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V   75 (186)
T 1qr4_A            3 AGTDLDNPKD-LEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPS-GKKNEME-IPVDSTSFILRGLDAGTEYTISL   75 (186)
T ss_dssp             -----CCCEE-EEEESCCSSEEEEEEECCSS----CCSEEEEEEECTT-CCEEEEE-ECTTCSEEEEESCCSSCEEEEEE
T ss_pred             ccCCCcCCCc-eEEEecCCCEEEEEEeCCCC----CccEEEEEEEeCC-CCeeEEE-CCCCCCEEEECCCCCCCEEEEEE
Confidence            4567889988 88998899999999998642    5889999998543 3333222 23457899999999999999999


Q ss_pred             EEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeec
Q psy7040         299 RAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTE  378 (716)
Q Consensus       299 ~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~  378 (716)
                      +|.|..|.+.+..    ....   ..|.+|.++.+...+.+++.|+|.+|.    +.+.+|.|+|+..+...+. .....
T Consensus        76 ~a~~~~~~s~~~~----~~~~---t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~-~~~~~  143 (186)
T 1qr4_A           76 VAEKGRHKSKPTT----IKGS---TVVGSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPN-VVTVD  143 (186)
T ss_dssp             EEESSSCBCCCEE----EEEE---CCCCCCSCEEEESCCSSCEEEEECCCS----SCCSEEEEEEEETTCCCCE-EEEEE
T ss_pred             EEEcCCccCCCEE----EEEE---CCCCCCCccEEEEeCCCEEEEEEECCC----CcccEEEEEEEeCCCCCce-EEEcC
Confidence            9999766554322    2232   347788899999999999999999864    2589999999887643333 33345


Q ss_pred             CCCCeEEecCCCCCCeEEEEEEEEeCCCCCCC
Q psy7040         379 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  410 (716)
Q Consensus       379 ~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~  410 (716)
                      ....++.|.+|.|++.|.|+|+|.|..|.+.+
T Consensus       144 ~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p  175 (186)
T 1qr4_A          144 GSKTRTKLVKLVPGVDYNVNIISVKGFEESEP  175 (186)
T ss_dssp             TTCCEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred             CCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcC
Confidence            67799999999999999999999999887754

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.77  E-value=1.7e-18  Score=159.93  Aligned_cols=194  Identities=16%  Similarity=0.165  Sum_probs=138.8

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEE-ecccCCCeEEecCC-CCCcEEEEEEEEEecCc
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIP-VGKTREPEMDVTGL-TPGHEYKFRVKALNKEG  134 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~-~~~~~~~~~~i~~L-~~~~~y~~~v~a~~~~g  134 (716)
                      +|.+|.+...+.+++.|+|++|...+ . ..+|.|+++..+...+.. ......+++.|.+| .+++.|.|+|+|.|..|
T Consensus        10 ~P~~l~~~~~~~~sv~l~W~~p~~~~-~-~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~t~Y~~~V~A~n~~G   87 (215)
T 1bqu_A           10 KPKNLSCIVNEGKKMRCEWDGGRETH-L-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALG   87 (215)
T ss_dssp             CCEEEEEEEETTSCCEEEEECCSCCS-S-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTE
T ss_pred             CCEeeEeEECCCCcEEEEcCCCCCCC-C-CceEEEEEEEcCCCccccccccCCcceEEEcCCccccccEEEEEEEEeccc
Confidence            33446666777789999999987543 3 579999998654322211 11223479999999 99999999999999999


Q ss_pred             cCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeE
Q psy7040         135 ESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVE  214 (716)
Q Consensus       135 ~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  214 (716)
                      .+.+... . +...                                                                  
T Consensus        88 ~~~s~~~-~-~~~~------------------------------------------------------------------   99 (215)
T 1bqu_A           88 KVTSDHI-N-FDPV------------------------------------------------------------------   99 (215)
T ss_dssp             EEECCCE-E-ECGG------------------------------------------------------------------
T ss_pred             CccCCcE-E-eccc------------------------------------------------------------------
Confidence            7652211 1 1000                                                                  


Q ss_pred             EEEEEecCCCCCCCCeEEeEE--eCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc--CcccceEEEcCCCC
Q psy7040         215 VEVIVLDKPSPPGGPLKVSNV--HAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET--EGPVTGLEVEGLIP  290 (716)
Q Consensus       215 ~~~~v~~~p~~p~~~~~~~~~--~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p  290 (716)
                          ...+|.+|.+ +.+...  ..+++.|+|++|...++ .+.+|.|+++..+...|..+...  ......+.|.+|.|
T Consensus       100 ----~~~~p~pP~~-~~~~~~~~~~~sv~l~W~~p~~~~~-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  173 (215)
T 1bqu_A          100 ----YKVKPNPPHN-LSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKP  173 (215)
T ss_dssp             ----GSEECCCCEE-EEEECC--CCSCEEEEEECCGGGGT-SCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCS
T ss_pred             ----ccCcCCCCCc-eEEEEecCCCceEEEEEeCCCCCCc-ceEEEEEEEccCCCCCceEeccccccCccceEEeCCCCC
Confidence                0024667766 666543  66899999998876554 68999999998877788876532  35678999999999


Q ss_pred             CCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCC
Q psy7040         291 NHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG  326 (716)
Q Consensus       291 ~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~  326 (716)
                      ++.|.|+|+|.|..|.+.++..+..+...+...+|.
T Consensus       174 ~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~~~P~  209 (215)
T 1bqu_A          174 FTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPS  209 (215)
T ss_dssp             SEEEEEEEEEEETTSCSCCCCCCCCEEEEECCCHHH
T ss_pred             CCEEEEEEEEccCCCCCccCCCCCcccccccccCCc
Confidence            999999999999999877776666565555444443

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.77  E-value=3.8e-18  Score=155.48  Aligned_cols=176  Identities=15%  Similarity=0.310  Sum_probs=129.9

Q ss_pred             CCCCCeEEeEEe--CCeEEEEEECCCCCCCCccceEEEEEEeCCC-CCeEEccccCcccceEEEcCCCCCCeEEEEEEEE
Q psy7040         225 PPGGPLKVSNVH--AEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT-GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV  301 (716)
Q Consensus       225 ~p~~~~~~~~~~--~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~  301 (716)
                      +|.+ +.+....  .+++.|+|.+|.   +.++.+|.|+++.... ..|..... ......+.|.+|.|++.|.|+|.|.
T Consensus         2 ~P~~-l~v~~v~~~~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~   76 (201)
T 2ha1_A            2 GPVE-VFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATI-PGHLNSYTIKGLKPGVVYEGQLISI   76 (201)
T ss_dssp             CCCE-EECCSCSCCSSCEEEEEECCS---STTCCEEEEEEEETTCSSCCEEEEE-CTTCCEEEECSCCTTEEEEEEEEEE
T ss_pred             Ccee-EEEEecCCCCCEEEEEEeCCC---CCCceEEEEEEEECCCCCceEEEec-CCCccEEEecCCCCCCEEEEEEEEE
Confidence            4555 6777766  899999999872   3479999999987543 45554432 3457899999999999999999999


Q ss_pred             cCCCCCCCCcccceEEe--------cCCCCCCCC-----CCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC
Q psy7040         302 NKQGKSEPLTTTASIEA--------KNPFNQPGK-----PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS  368 (716)
Q Consensus       302 n~~g~~~~~~~~~~~~~--------~~~~~~p~~-----p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~  368 (716)
                      |..|.+.++... ..+.        ......|.+     |.++.+...+.+++.|+|.+|.    +.+.+|.|+|+..+.
T Consensus        77 n~~G~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~  151 (201)
T 2ha1_A           77 QQYGHQEVTRFD-FTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEE  151 (201)
T ss_dssp             CTTSCEEEEEEE-EEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCSC----TTEEEEEEEEEETTT
T ss_pred             ecccccCceeEE-EecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCCC----CCccEEEEEEEECCC
Confidence            999987643111 0100        000011221     2567888888999999999873    269999999997654


Q ss_pred             CceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCC
Q psy7040         369 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  410 (716)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~  410 (716)
                      ..+...........++.|.+|.|++.|.|+|+|.|..|.|.+
T Consensus       152 ~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~  193 (201)
T 2ha1_A          152 GDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSL  193 (201)
T ss_dssp             CCCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEEE
T ss_pred             CCceeEEEcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCccc
Confidence            555555556778899999999999999999999999998754

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.77  E-value=1.8e-17  Score=148.86  Aligned_cols=171  Identities=22%  Similarity=0.379  Sum_probs=127.8

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEec-ccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG-KTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      .+.||.+|++..++.+++.|+|++|.    .++.+|+|+|+..++ .+.... .....++.|.+|.|++.|.|+|+|.|.
T Consensus         6 ~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   80 (186)
T 1qr4_A            6 DLDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSG-KKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKG   80 (186)
T ss_dssp             --CCCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECTTC-CEEEEEECTTCSEEEEESCCSSCEEEEEEEEESS
T ss_pred             CCcCCCceEEEecCCCEEEEEEeCCC----CCccEEEEEEEeCCC-CeeEEECCCCCCEEEECCCCCCCEEEEEEEEEcC
Confidence            34566668888889999999999974    258999999985543 333322 334589999999999999999999997


Q ss_pred             CccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCce
Q psy7040         133 EGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDS  212 (716)
Q Consensus       133 ~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  212 (716)
                      .|.+.+..                                                                        
T Consensus        81 ~~~s~~~~------------------------------------------------------------------------   88 (186)
T 1qr4_A           81 RHKSKPTT------------------------------------------------------------------------   88 (186)
T ss_dssp             SCBCCCEE------------------------------------------------------------------------
T ss_pred             CccCCCEE------------------------------------------------------------------------
Confidence            66553211                                                                        


Q ss_pred             eEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCC
Q psy7040         213 VEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNH  292 (716)
Q Consensus       213 ~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  292 (716)
                          +.+...|.+|.+ +.+.....+++.|+|.+|.   + ++.+|.|.++..+...+..... ......+.|.+|.|++
T Consensus        89 ----~~~~t~p~~P~~-l~~~~~~~~sv~l~W~~p~---~-~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t  158 (186)
T 1qr4_A           89 ----IKGSTVVGSPKG-ISFSDITENSATVSWTPPR---S-RVDSYRVSYVPITGGTPNVVTV-DGSKTRTKLVKLVPGV  158 (186)
T ss_dssp             ----EEEECCCCCCSC-EEEESCCSSCEEEEECCCS---S-CCSEEEEEEEETTCCCCEEEEE-ETTCCEEEECSCCSSC
T ss_pred             ----EEEECCCCCCCc-cEEEEeCCCEEEEEEECCC---C-cccEEEEEEEeCCCCCceEEEc-CCCcCEEEEcCCCCCC
Confidence                112345777877 8888888999999999764   2 5899999998765443333222 2457899999999999


Q ss_pred             eEEEEEEEEcCCCCCCCCc
Q psy7040         293 KYKFRVRAVNKQGKSEPLT  311 (716)
Q Consensus       293 ~y~~~v~a~n~~g~~~~~~  311 (716)
                      .|.|+|+|.+..|.+.+..
T Consensus       159 ~Y~~~V~A~~~~g~s~p~~  177 (186)
T 1qr4_A          159 DYNVNIISVKGFEESEPIS  177 (186)
T ss_dssp             EEEEEEEEEETTEECCCEE
T ss_pred             EEEEEEEEEcCCCcCcCEE
Confidence            9999999999888776543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.77  E-value=6.5e-17  Score=159.75  Aligned_cols=251  Identities=15%  Similarity=0.159  Sum_probs=169.6

Q ss_pred             CCCcccccccccEEEecCCeEEEEEEEecc-CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040         424 VSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       424 ~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      .+|.+..  +.++.+.+|+.+.|.|.+.+. |.+.+.|++++..+....++.+.  .....|.|.++...|.|.|+|.|.
T Consensus         6 ~~P~~~~--~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~   81 (317)
T 2y25_A            6 TGPHFVE--YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILK   81 (317)
T ss_dssp             SCCEEEE--EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEEEEE
T ss_pred             CCCcEee--eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE--CCeEEEEEccCCcccCeEEEEEEE
Confidence            3565542  235889999999999999887 77899999999998876666554  345799999999999999999999


Q ss_pred             cCCCceeeEEEEEEE------------------EEEEEEeCCCCCCCCceeeEEEEEEecC-CCceeeeEEEccceeeee
Q psy7040         503 NSWGTDKGTAKVTVL------------------GCSLKWNPPEDDGGAPIEYYMVEKMETD-TGKVLIKWIRTNDKRVTI  563 (716)
Q Consensus       503 n~~g~~~~s~~~~v~------------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~w~~~~~~~~~~  563 (716)
                      |..|.......+.+.                  .+.|....         .+..+...-.. .+.+.+.|++.+......
T Consensus        82 n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~---------~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~  152 (317)
T 2y25_A           82 DDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA---------EGIQLYSFVTYYVEDLKVNWSHNGSAIRYS  152 (317)
T ss_dssp             SSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECS---------SEEEEEEEBSSCCSSCEEEEEESSSBCCCC
T ss_pred             CCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeec---------cccEEEEEeccCCCCcEEEEEECCEECCCC
Confidence            999977655444332                  22333211         11111111111 234558999887654321


Q ss_pred             c-----cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeecc-----------------CCCCCCcc-------c
Q psy7040         564 D-----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT-----------------DKPSAPEG-------P  614 (716)
Q Consensus       564 ~-----~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~-----------------~~p~~~~~-------~  614 (716)
                      .     .......+.|.++...+.+.|+|.|.|..|....+..+.+.                 .....|..       +
T Consensus       153 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  232 (317)
T 2y25_A          153 DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV  232 (317)
T ss_dssp             SSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEE
T ss_pred             CCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccE
Confidence            1     11223459999999999999999999988866555444321                 01111110       1


Q ss_pred             eeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeeccc-------ceeeEEEEccCCCCCcEEEEEEE
Q psy7040         615 IQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTIDNV-------DYFTKITIRPLQRSDTAQYTVTA  683 (716)
Q Consensus       615 ~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~~~-------~~~~~~~i~~l~~~~~y~y~~~a  683 (716)
                      ....+..+.              |.|.+.|    .+.|+++|..+..+..       +....|.|.++...|+|.|+|.|
T Consensus       233 ~v~~g~~~~--------------l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  298 (317)
T 2y25_A          233 TIQEGKALN--------------LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV  298 (317)
T ss_dssp             EEETTSBBC--------------EEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEE
T ss_pred             EEEcCCEEE--------------EEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEE
Confidence            111222333              6666666    8999999988865411       33358999999999999999999


Q ss_pred             EcCCCCceeeEEEEEecC
Q psy7040         684 TNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       684 ~n~~G~~~~s~~l~v~~~  701 (716)
                      .|..|....+..|.|..|
T Consensus       299 ~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          299 KNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EeCCCeEEEEEEEEEEcC
Confidence            999999999999999854

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.77  E-value=2e-17  Score=162.27  Aligned_cols=252  Identities=9%  Similarity=-0.011  Sum_probs=164.4

Q ss_pred             cEEEecCCeEEEEEEEecc-----CCCeEEEEeCCeEeccCCcEEEEeCCC-eEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         435 DIKVRAGSNFEFDINVIGE-----PIPTKEWLCNDITIISKDRFKIVNDDK-STKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      +..+..|+.+.|.|.+.+.     |.+.+.|.+++..+.. .++.....+. ...|.|.++...|.|.|.|.|.+..+..
T Consensus         9 ~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~~   87 (313)
T 2d9q_B            9 APIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG-GRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQI   87 (313)
T ss_dssp             CSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTT-CEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEEE
T ss_pred             CcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCc-cceEEEecCeEEEEEEEeccCCCccceEEeeecCCCcee
Confidence            4568899999999999987     5788999999987743 2222222222 2689999999999999999987644432


Q ss_pred             eeEEEEEEE------------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCc--eeeeEEEccceeeeeccccc
Q psy7040         509 KGTAKVTVL------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGK--VLIKWIRTNDKRVTIDNVDY  568 (716)
Q Consensus       509 ~~s~~~~v~------------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~--~~~~w~~~~~~~~~~~~~~~  568 (716)
                      ...+.+.+.                  ++.++|+++.+. +. ...|.|+++......  ....|......       ..
T Consensus        88 ~~~~~l~v~~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~-~~-~~~Y~l~~~~~~~~~~~~~~~~~~~~~~-------~~  158 (313)
T 2d9q_B           88 LDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPET-HL-PTSFTLKSFKSRGNCQTQGDSILDCVPK-------DG  158 (313)
T ss_dssp             EEEEEEEECCCCCCCEEEEEEEETTTTEEEEEEECCSCC-SS-CCEEEEEEEECCTTSCSCCCCEEEECCC-------TT
T ss_pred             EEEEEEccCCCCCCCccceeeECCCCccEEEEecCCCCC-CC-ceeEEEEEEecCCCcccCCcccccCCCC-------CC
Confidence            223333322                  799999998653 34 456999988654210  01233322110       01


Q ss_pred             eeEEEE--cCCCCCCeEEEEEEEEcCCCCCcccee-eec-----cCCCCCCccceee------ccceeEEEEE-------
Q psy7040         569 FTKITI--RPLQRSDTAQYTVTATNSQGKDQVFIE-VVV-----TDKPSAPEGPIQW------LLTLTDVTWE-------  627 (716)
Q Consensus       569 ~~~~~i--~~L~~~~~y~~~v~a~n~~G~~~~s~~-~~v-----~~~p~~~~~~~~~------~~~~v~l~w~-------  627 (716)
                      ...+.+  .+|.+.+.|.|+|.|.|..|.+..... +..     +.+|..+. +...      ..+++.|+|+       
T Consensus       159 ~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~-~~~~~~~~~~~~~~l~l~W~~p~~~~~  237 (313)
T 2d9q_B          159 QSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRT-MDPSPEAAPPQAGCLQLSWEPWQPGLH  237 (313)
T ss_dssp             CSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEE-CCC-------CCSCEEEEEECCGGGTT
T ss_pred             CcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeE-EEEecccccCCCCeEEEEECCCCCCCc
Confidence            134445  569999999999999999998643222 221     44454443 3333      3578999999       


Q ss_pred             -EeeEEEEee-eeccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCce---eeEEEEEecCC
Q psy7040         628 -ISNYLQELH-SSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ---VFIEVVVTDKP  702 (716)
Q Consensus       628 -i~~y~v~~~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~---~s~~l~v~~~p  702 (716)
                       +.+|.|+|+ ...     .-.|.....     .......+.|.+|.+++.|.++++|.|..|.+.   +|..+.+.++.
T Consensus       238 ~~l~Y~v~y~~~~~-----~~~w~~~~~-----~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~  307 (313)
T 2d9q_B          238 INQKCELRHKPQRG-----EASWALVGP-----LPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTE  307 (313)
T ss_dssp             SCEEEEEEEEESSS-----CCCCEEEEE-----ECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC
T ss_pred             eeEEEEEEEccCCC-----CCCcEEccc-----ccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCc
Confidence             368999887 421     223432111     112346799999999999999999999987774   66778899988


Q ss_pred             CCCCC
Q psy7040         703 SAPEG  707 (716)
Q Consensus       703 ~~p~~  707 (716)
                      .+|.+
T Consensus       308 ~~P~~  312 (313)
T 2d9q_B          308 RAAAP  312 (313)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            88854

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.77  E-value=2.8e-17  Score=151.78  Aligned_cols=176  Identities=19%  Similarity=0.264  Sum_probs=143.5

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC--CcEEEEeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      +|.+.  .+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+...  .++.+...+....|.|.++...|.|.|+|.|.
T Consensus        19 ~P~~~--~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           19 APKLQ--GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEE--CCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             CCccc--CCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            45542  344578999999999999999999999999999988765  56677766778899999999999999999999


Q ss_pred             cCCCceeeEEEEEEE----------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccc
Q psy7040         503 NSWGTDKGTAKVTVL----------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNV  566 (716)
Q Consensus       503 n~~g~~~~s~~~~v~----------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~  566 (716)
                      |..|.......+.+.                ++.|+|..|..+++.++.+|.|++.....    ..|........   ..
T Consensus        97 n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~----~~w~~~~~~~~---~~  169 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE----EVWHSKWYDAK---EA  169 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTC----CCCEEEEEEHH---HH
T ss_pred             ECCCceEEEEEEEECCCCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCC----Ccccccccccc---cc
Confidence            999988877777664                88999999887788889999999998877    56664321110   00


Q ss_pred             cceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCC
Q psy7040         567 DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS  609 (716)
Q Consensus       567 ~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~  609 (716)
                      .....+.|.+|.+++.|.|+|.|.|..|.|.++..+.+..+|.
T Consensus       170 ~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p~  212 (215)
T 3mtr_A          170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV  212 (215)
T ss_dssp             HHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC-
T ss_pred             cccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEeccc
Confidence            1127899999999999999999999999999998887766553

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.77  E-value=1.2e-17  Score=152.04  Aligned_cols=174  Identities=21%  Similarity=0.368  Sum_probs=129.3

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEE-Ee-cccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI-PV-GKTREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~-~~-~~~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      ++++|..|.+..++.+++.|+|++|.   +..+.+|+|+|+..+...+. .. .....+++.|.+|.|++.|.|+|+|.|
T Consensus        22 ~~P~P~~l~~~~~~~~sv~lsW~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   98 (203)
T 2gee_A           22 EVPQPTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVK   98 (203)
T ss_dssp             CCCCCEEEEEECCTTTCEEEEEECCS---SSSCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEES
T ss_pred             cCcCCCccEEEecCCCEEEEEecCCC---CCCccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEEEEEEEe
Confidence            44555667788888999999999986   24599999999877654332 22 223458999999999999999999999


Q ss_pred             cCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCc
Q psy7040         132 KEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD  211 (716)
Q Consensus       132 ~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  211 (716)
                      ..|.+.++..   .+                                                                 
T Consensus        99 ~~g~s~~~~~---~t-----------------------------------------------------------------  110 (203)
T 2gee_A           99 NGGESTPTTL---TQ-----------------------------------------------------------------  110 (203)
T ss_dssp             SSCBCCCEEE---EE-----------------------------------------------------------------
T ss_pred             CCCccccEee---ee-----------------------------------------------------------------
Confidence            8876654321   11                                                                 


Q ss_pred             eeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCC-CeEEccccCcccceEEEcCCCC
Q psy7040         212 SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG-RWTPAGETEGPVTGLEVEGLIP  290 (716)
Q Consensus       212 ~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p  290 (716)
                             ...+| +|.+ +.+.....+++.|+|++|..  + .+.+|.|.+...... .+... ........+.|.+|.|
T Consensus       111 -------~~~~p-~P~~-l~~~~~~~~sv~l~W~~p~~--~-~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p  177 (203)
T 2gee_A          111 -------QTAVP-PPTD-LRFTNIGPDTMRVTWAPPPS--I-DLTNFLVRYSPVKNEEDVAEL-SISPSDNAVVLTNLLP  177 (203)
T ss_dssp             -------ECCCC-CCEE-EEEEEEETTEEEEEEECCSS--C-CCSEEEEEEEETTCGGGCEEE-EECTTCCEEEECSCCT
T ss_pred             -------cCCCc-CCCc-eEEEEcCCCEEEEEEcCCCC--C-CccEEEEEEEECCCCCccEEE-EcCCCcCEEEECCCCC
Confidence                   01233 5666 78888899999999998742  2 689999999875432 23322 2235678999999999


Q ss_pred             CCeEEEEEEEEcCCCCCCCCc
Q psy7040         291 NHKYKFRVRAVNKQGKSEPLT  311 (716)
Q Consensus       291 ~~~y~~~v~a~n~~g~~~~~~  311 (716)
                      ++.|.|+|+|.|..|.+.+..
T Consensus       178 ~t~Y~~~V~A~~~~g~s~p~~  198 (203)
T 2gee_A          178 GTEYVVSVSSVYEQHESTPLR  198 (203)
T ss_dssp             TCEEEEEEEEEETTEECCCEE
T ss_pred             CCEEEEEEEEecCCCcCCCee
Confidence            999999999999988876544

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.76  E-value=3.6e-17  Score=167.81  Aligned_cols=287  Identities=18%  Similarity=0.184  Sum_probs=185.5

Q ss_pred             CCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEE-eccCCCeEEEEeCCeE
Q psy7040         388 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDIT  466 (716)
Q Consensus       388 ~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~  466 (716)
                      ++...+...|+|.|.|..|......  ....+.   .+|.+.........+.+|+.+.|.|.+ .+.|.+.+.|++++..
T Consensus        83 ~~~~~D~G~Y~C~a~n~~g~~~s~~--~~l~V~---~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~  157 (404)
T 3p3y_A           83 GRPEEYEGEYQCFARNKFGTALSNR--IRLQVS---KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSME  157 (404)
T ss_dssp             CCTTSSCEEEEEEEECSSCEEEEEE--EEEEEC---CCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSC
T ss_pred             CCCccCCEEEEEEEEcCCCeEeeee--EEEEEe---ccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCcc
Confidence            6677889999999999877532111  111222   233333334456789999999999999 8899999999998754


Q ss_pred             ec-cCCcEEEEeCCCeEEEEECCCCCCC-ceeEEEEEEcCCCceeeE---EEEEEEEE-EEEEeCCC-------------
Q psy7040         467 II-SKDRFKIVNDDKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGT---AKVTVLGC-SLKWNPPE-------------  527 (716)
Q Consensus       467 ~~-~~~~~~~~~~~~~~~l~i~~l~~~~-~~~y~~~a~n~~g~~~~s---~~~~v~~v-~l~W~~p~-------------  527 (716)
                      .. ...++....   ...|.|.++...| .|.|+|.|.|..|.....   ..+.+... .+.-.+|.             
T Consensus       158 ~~~~~~~~~~~~---~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~  234 (404)
T 3p3y_A          158 PITQDKRVSQGH---NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMV  234 (404)
T ss_dssp             BCCCCSSEEECT---TSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEE
T ss_pred             ccCCCCcEEEcC---CCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceE
Confidence            33 333333322   2369999999999 499999999988764322   22222200 00000010             


Q ss_pred             CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec--cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeecc
Q psy7040         528 DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  605 (716)
Q Consensus       528 ~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~  605 (716)
                      ..+..    ..+.....+.+.+.+.|++.+.......  .......+.|.++...+.+.|+|.|.|..|.......+.|.
T Consensus       235 ~~G~~----v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  310 (404)
T 3p3y_A          235 LRGMD----LLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK  310 (404)
T ss_dssp             ETTSC----EEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ecCCC----EEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEe
Confidence            00111    2233333333455699999876543111  11223679999999999999999999999876666555565


Q ss_pred             CCCCC---CccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeecc-----cceeeEEEEccCCC
Q psy7040         606 DKPSA---PEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTIDN-----VDYFTKITIRPLQR  673 (716)
Q Consensus       606 ~~p~~---~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~~-----~~~~~~~~i~~l~~  673 (716)
                      .+|..   |.......+..+.              |.|.+.|    .+.|+++|..+....     ......|.|.++..
T Consensus       311 ~~p~~~~~~~~~~v~~g~~~~--------------l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~  376 (404)
T 3p3y_A          311 AAPYWLDEPKNLILAPGEDGR--------------LVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI  376 (404)
T ss_dssp             EEEEEEECCCCEEECTTCCEE--------------EECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCS
T ss_pred             CCCeeeccCCcceeecCCcEE--------------EEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCH
Confidence            54421   1101111233444              5566655    899999999886541     11225799999999


Q ss_pred             CCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         674 SDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       674 ~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      .|+|.|+|.|.|..|....++.|.|.+
T Consensus       377 ~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          377 SSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             SCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             HHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999999999998864

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.76  E-value=3.6e-17  Score=159.37  Aligned_cols=251  Identities=20%  Similarity=0.277  Sum_probs=165.7

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEe-CCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee-e
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLC-NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-G  510 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~-~  510 (716)
                      +.++.+..|+.+.|.|.+.+.|. .+.|++ ++..+....++.+...+....|.|.++...|.|.|+|.|.|..|... .
T Consensus        11 ~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~   89 (291)
T 2wim_A           11 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA   89 (291)
T ss_dssp             CSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEE
T ss_pred             ccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEE
Confidence            44678999999999999999875 899999 67777777788887777788999999999999999999999988753 3


Q ss_pred             EEEEEEEEEEEEEeC-CC----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec----cccceeEEEEcCCCCCC
Q psy7040         511 TAKVTVLGCSLKWNP-PE----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID----NVDYFTKITIRPLQRSD  581 (716)
Q Consensus       511 s~~~~v~~v~l~W~~-p~----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~i~~L~~~~  581 (716)
                      ...+.+.. ...+.. +.    ..+..    ..+.....+.+.+.+.|++.+.......    .......+.|.++...+
T Consensus        90 ~~~l~v~~-~~~~~~~~~~~~v~~G~~----v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  164 (291)
T 2wim_A           90 TVVLEIYQ-KLTFREVVSPQEFKQGED----AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSD  164 (291)
T ss_dssp             EEEEEEEC-CCBCCSCCCSEEEETTSC----EEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGG
T ss_pred             EEEEEecC-CcceEeCCCChhhcCCCC----EEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhh
Confidence            34444330 000000 00    00111    1222222233445589988765433211    11123579999999999


Q ss_pred             eEEEEEEEEcCCCCCccceeee--ccCCCCCCcc-----ceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEe
Q psy7040         582 TAQYTVTATNSQGKDQVFIEVV--VTDKPSAPEG-----PIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLM  650 (716)
Q Consensus       582 ~y~~~v~a~n~~G~~~~s~~~~--v~~~p~~~~~-----~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~  650 (716)
                      .+.|+|.|.|..+....+..+.  +..+|.....     .....+..+.              |.|.+.|    .+.|++
T Consensus       165 ~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~--------------l~C~~~g~p~p~v~W~~  230 (291)
T 2wim_A          165 EGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT--------------FSCRASGSPEPAISWFR  230 (291)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEE--------------EECBCCCBSCCEEEEEE
T ss_pred             CEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEE--------------EEEEeecCCCCeEEEEE
Confidence            9999999999875433333222  4444432110     1111123333              6777776    899999


Q ss_pred             CCeEeeecc----cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy7040         651 NDKRVTIDN----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS  703 (716)
Q Consensus       651 ~~~~~~~~~----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~  703 (716)
                      +|..+....    ......|.|.++...|+|.|+|.|.|..|....++.|.|..++.
T Consensus       231 ~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          231 NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             TTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred             CCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence            999887541    22236899999999999999999999999999999999988653

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.75  E-value=1.1e-17  Score=152.37  Aligned_cols=185  Identities=15%  Similarity=0.301  Sum_probs=128.9

Q ss_pred             CCCCceEEEEe--CCeEEEEecCCCCCCCCccceEEEEEEcCCC-CcEEEecc-cCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          57 PEGPLEVSNIH--KDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWIPVGK-TREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        57 p~~~l~~~~~~--~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +|.+|.+.+++  .+++.|+|++|   .+.++.+|.|+|+..+. +.|..... ...+++.|.+|.|++.|.|+|+|.|.
T Consensus         2 ~P~~l~v~~v~~~~~si~l~W~~p---~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~   78 (201)
T 2ha1_A            2 GPVEVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQ   78 (201)
T ss_dssp             CCCEEECCSCSCCSSCEEEEEECC---SSTTCCEEEEEEEETTCSSCCEEEEECTTCCEEEECSCCTTEEEEEEEEEECT
T ss_pred             CceeEEEEecCCCCCEEEEEEeCC---CCCCceEEEEEEEECCCCCceEEEecCCCccEEEecCCCCCCEEEEEEEEEec
Confidence            45567777777  89999999998   34569999999987553 55655433 33589999999999999999999999


Q ss_pred             CccCCCccccceEEecC-CCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCc
Q psy7040         133 EGESEPLETFSSIIARD-PYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD  211 (716)
Q Consensus       133 ~g~~~~s~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  211 (716)
                      .|.+.++. ....+..+ +.....                                                        
T Consensus        79 ~G~~~~~~-~~~~t~~~~~~~~~~--------------------------------------------------------  101 (201)
T 2ha1_A           79 YGHQEVTR-FDFTTTSTSTPVTSN--------------------------------------------------------  101 (201)
T ss_dssp             TSCEEEEE-EEEEECCCCCTTCSC--------------------------------------------------------
T ss_pred             ccccCcee-EEEecCCCCCCcccc--------------------------------------------------------
Confidence            99876542 11111110 100000                                                        


Q ss_pred             eeEEEEEEecCCCC-C----CCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEc
Q psy7040         212 SVEVEVIVLDKPSP-P----GGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVE  286 (716)
Q Consensus       212 ~~~~~~~v~~~p~~-p----~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~  286 (716)
                            .+...|.+ |    .+ +.+.....+++.|+|.+|.   + ++.+|.|.+.......|.......+....+.|.
T Consensus       102 ------~~~~~~~~~p~~~~~~-l~~~~~~~~sv~l~W~~p~---~-~i~~Y~v~~~~~~~~~~~~~~~v~~~~~~~~i~  170 (201)
T 2ha1_A          102 ------TVTGETTPFSPLVATS-ESVTEITASSFVVSWVSAS---D-TVSGFRVEYELSEEGDEPQYLDLPSTATSVNIP  170 (201)
T ss_dssp             ------CCCCSCCCCCCSCSCC-SSCCCCCSCCEEEECCCSC---T-TEEEEEEEEEETTTCCCCEEEEEETTCCEEEEC
T ss_pred             ------cccCCCCCCCCccCCc-eEEEecCCCeEEEEEeCCC---C-CccEEEEEEEECCCCCceeEEEcCCceeEEEeC
Confidence                  00011211 1    33 6777788899999999873   2 689999999865444443333334567899999


Q ss_pred             CCCCCCeEEEEEEEEcCCCCCCCCcc
Q psy7040         287 GLIPNHKYKFRVRAVNKQGKSEPLTT  312 (716)
Q Consensus       287 ~L~p~~~y~~~v~a~n~~g~~~~~~~  312 (716)
                      +|.|++.|.|+|.|.|..|.+.+...
T Consensus       171 ~L~p~t~Y~~~V~A~~~~G~~~~~s~  196 (201)
T 2ha1_A          171 DLLPGRKYIVNVYQISEDGEQSLILS  196 (201)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEEE
T ss_pred             CCCCCCEEEEEEEEEcCCCCcccEee
Confidence            99999999999999999998765443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.75  E-value=6.5e-17  Score=165.88  Aligned_cols=315  Identities=18%  Similarity=0.148  Sum_probs=195.5

Q ss_pred             CccEEEEe----ccccCcceEEEEEEEeCCCCc-eeEEEEEEecCCCCCCCCe-EEeEEeCCeEEEEEECCCCCCCCccc
Q psy7040         183 YNTKLGVR----MAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPL-KVSNVHAEGVTLDWKVPDDDGGQPIE  256 (716)
Q Consensus       183 ~~~~l~i~----~l~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p~~p~~~~-~~~~~~~~~~~l~W~~p~~~~~~~~~  256 (716)
                      .+..|.|.    +++..|+|.|+|.|.|..|.. +..+.+.|..+|..+.... ......++.+.|.|..+.   +.+..
T Consensus        71 ~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~---~~p~~  147 (404)
T 3p3y_A           71 RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP---GLPSP  147 (404)
T ss_dssp             SSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCC---CSSCC
T ss_pred             CCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCC---CCCCC
Confidence            34556664    788999999999999999986 4678888888776654322 244557889999999632   22333


Q ss_pred             eEEEEEEeCCCCCeEEc-cccCcccceEEEcCCCCCC-eEEEEEEEEcCCCCCCCCcccceEEecC-CCCCCCCCC----
Q psy7040         257 KYVVDKMDEATGRWTPA-GETEGPVTGLEVEGLIPNH-KYKFRVRAVNKQGKSEPLTTTASIEAKN-PFNQPGKPG----  329 (716)
Q Consensus       257 ~y~v~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~~-~y~~~v~a~n~~g~~~~~~~~~~~~~~~-~~~~p~~p~----  329 (716)
                      .+.  |...+....... .........+.|.++...+ .+.|+|.|.|..|..........+.+.. +.....+|.    
T Consensus       148 ~v~--W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~  225 (404)
T 3p3y_A          148 VIF--WMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYP  225 (404)
T ss_dssp             EEE--EECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSS
T ss_pred             eEE--EeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccc
Confidence            333  322211100000 0001234579999999999 4999999999877532222211122211 111111111    


Q ss_pred             --C-cEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040         330 --T-PEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  406 (716)
Q Consensus       330 --~-~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g  406 (716)
                        . -......+..+.|.|.....    +..  .+.|...+................+.|.++...+.+.|+|.|.|..|
T Consensus       226 ~~~~~~~~~~~G~~v~l~C~~~g~----p~~--~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  299 (404)
T 3p3y_A          226 QGTASSQMVLRGMDLLLECIASGV----PTP--DIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG  299 (404)
T ss_dssp             CSSEEEEEEETTSCEEEECCBCCS----SCC--EEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             cCCCCCceEecCCCEEEEEEECCC----CCC--cEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCC
Confidence              1 12333456778999976322    222  23343332110000001122346799999999999999999999887


Q ss_pred             CCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCc-EEEEeCCCeEEEE
Q psy7040         407 PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVNDDKSTKLK  485 (716)
Q Consensus       407 ~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~l~  485 (716)
                      ....+   ....+.   .+|.+. ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+..... ......  ...|.
T Consensus       300 ~~~~~---~~l~V~---~~p~~~-~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~--~~~L~  370 (404)
T 3p3y_A          300 SIRHT---ISVRVK---AAPYWL-DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVA--GDTII  370 (404)
T ss_dssp             EEEEE---EEEEEE---EEEEEE-ECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEE--TTEEE
T ss_pred             cEEEE---EEEEEe---CCCeee-ccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEec--CCEEE
Confidence            53221   111111   134333 234557888999999999999999999999999998865431 111112  23899


Q ss_pred             ECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         486 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       486 i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      |.++...|.|.|+|.|.|..|....++.+.+.
T Consensus       371 i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          371 FRDTQISSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             ESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            99999999999999999999999888877764

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.74  E-value=1.2e-16  Score=163.46  Aligned_cols=277  Identities=13%  Similarity=0.125  Sum_probs=168.2

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCC-----CccceEEEEEEcCCCCcEEEecc--cCCCeEEec--CCCCCcEEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGG-----EPLEGYLVEKYDPETGVWIPVGK--TREPEMDVT--GLTPGHEYK  124 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~-----~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~--~L~~~~~y~  124 (716)
                      .+.||.+|.+.... ..+.|+|++|.....     .....|+|+|+..+ ..|.....  .....+.+.  +|.|++.|.
T Consensus       108 ~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~-~~w~~~~~~~~~~~~~~~~~~~L~p~~~Y~  185 (419)
T 2gys_A          108 QPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ-DSWEDAAILLSNTSQATLGPEHLMPSSTYV  185 (419)
T ss_dssp             CCCCCEEEEEEEET-TEEEEEEECCC-----CCSCGGGEEEEEEEEETT-SCSTTCEEEEESSSEEEECTTTCCTTCEEE
T ss_pred             cCCCCCceEEEecC-CeEEEEECCCccccccchhccCceEEEEEEccCC-CChhheeeecccceEEEechhhcCCCCeEE
Confidence            34555567776655 699999999864321     24678999999876 55643332  123556666  999999999


Q ss_pred             EEEEEEecCc---cCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEE
Q psy7040         125 FRVKALNKEG---ESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYT  201 (716)
Q Consensus       125 ~~v~a~~~~g---~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  201 (716)
                      ++|+|.+..|   .+.+|..+..+....+.                                                  
T Consensus       186 ~rVra~~~~g~~~~G~wS~WS~~~~~~t~~--------------------------------------------------  215 (419)
T 2gys_A          186 ARVRTRLAPGSRLSGRPSKWSPEVCWDSQP--------------------------------------------------  215 (419)
T ss_dssp             EEEEEEECTTSSCCBCCCCCCCCEEEECCC--------------------------------------------------
T ss_pred             EEEEEecCCCCCCCcccCCCCCceeeeccc--------------------------------------------------
Confidence            9999999643   35555443332221110                                                  


Q ss_pred             EEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCC------CCeEEccc
Q psy7040         202 VTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT------GRWTPAGE  275 (716)
Q Consensus       202 c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~------~~~~~~~~  275 (716)
                                         ..|.+|.+ +.+.......+.+.|+++....+  ...|.|.|+....      ..+..+..
T Consensus       216 -------------------~~~~~p~~-l~c~~~~~~~l~c~W~~~~~~~~--~~~y~l~y~~~~~~g~~~~~~~~~C~~  273 (419)
T 2gys_A          216 -------------------GDEAQPQN-LECFFDGAAVLSCSWEVRKEVAS--SVSFGLFYKPSPDAGSAVLLREEECSP  273 (419)
T ss_dssp             -------------------CCTTSCEE-EEEEECSSSEEEEEEEEEHHHHT--TCCEEEEEECC-----CCCCCCEECCC
T ss_pred             -------------------cccCCCce-EEEEECCceEEEeEEECCCCCCC--ceeEEEEEEecCccccccCcccccCCC
Confidence                               12445555 66666677889999996421111  2459888875532      11333322


Q ss_pred             cCc---------ccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEec
Q psy7040         276 TEG---------PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWT  346 (716)
Q Consensus       276 ~~~---------~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~  346 (716)
                      ...         ....+.+.+|.+.+.|.++|.|.+..+.-.+   ...       ..|.+| .+.+.. ..+.+.|+|.
T Consensus       274 ~~~~~~~~~~~~~~c~~~~~~l~~~~~y~i~V~a~~~~~~~~~---~~~-------v~p~PP-~l~v~~-~~~~l~l~W~  341 (419)
T 2gys_A          274 VLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKS---SVN-------IQMAPP-SLQVTK-DGDSYSLRWE  341 (419)
T ss_dssp             EEEECCTTTEEEEEEEEECSCTTTCCEEEEEEEECCCCEEEEG---GGS-------BCCCCC-EEEEC----CCCEEEEE
T ss_pred             cccccCCCcceeEEeEEECccCCccCEEEEEEEEccCCccccc---eEE-------EEECCC-CeEEEE-eCCeEEEEEC
Confidence            111         1336778889999999999998754431110   100       124455 455554 4788999999


Q ss_pred             CCCCCCCccceEEEEEEeecCCCceEEE--eeecCCCCeEEecCCCCCCeEEEEEEEEeCCC--CCCCCCCCCceE
Q psy7040         347 PPEQNGGSPIVGYIIEKKEKYSPIWEKC--AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG--PGEPSDPTAPHI  418 (716)
Q Consensus       347 ~p~~~~~~~i~~y~v~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g--~~~~s~~~~~~~  418 (716)
                      +|....+..+.+|.|.|+..+ ..|...  .... ...++.|.+|.|++.|.|+|+|.+..|  .|.+|+.+..+.
T Consensus       342 ~P~~~~~~~~l~Yev~y~~~~-~~w~~~~~~~~~-~~~~~~l~~L~p~t~Y~~qVRa~~~~g~~~G~wS~WS~~~~  415 (419)
T 2gys_A          342 TMKMRYEHIDHTFEIQYRKDT-ATWKDSKTETLQ-NAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARS  415 (419)
T ss_dssp             C--------CEEEEEEEECSS-SCSTTSCEEEEE-SCSEEECCCCCSSCCCEEEEEEEECCTTCCBCCCCCCCCEE
T ss_pred             CCcccccccceEEEEEEEcCC-CCcceeeccccc-cccEEEeccCCCCCeEEEEEEEEEcCCCCCCccCCCCCCeE
Confidence            985422224779999999876 334311  1112 568899999999999999999999874  466666655443

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.74  E-value=2.8e-15  Score=159.10  Aligned_cols=402  Identities=11%  Similarity=0.036  Sum_probs=210.2

Q ss_pred             ceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCC---ceeEEEEEEecCCC-CCC---CCeEEeEEeCCeEEEEEEC
Q psy7040         174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGK---DSVEVEVIVLDKPS-PPG---GPLKVSNVHAEGVTLDWKV  246 (716)
Q Consensus       174 ~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~---~~~~~~~~v~~~p~-~p~---~~~~~~~~~~~~~~l~W~~  246 (716)
                      +|+.....+....|.|.+++..|+|.|+|.|.|..|.   ....+.|.|...+. +|.   .+.......+..+.|.|..
T Consensus        59 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~  138 (523)
T 2rcj_C           59 TRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLI  138 (523)
T ss_pred             CcEEEecCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEe
Confidence            3455444455678999999999999999999998874   23456777754332 221   1111223346789999986


Q ss_pred             CCCCCCCccceEEEEEEeCCCCC---eEEc-cc--cCcc---cceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEE
Q psy7040         247 PDDDGGQPIEKYVVDKMDEATGR---WTPA-GE--TEGP---VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE  317 (716)
Q Consensus       247 p~~~~~~~~~~y~v~~~~~~~~~---~~~~-~~--~~~~---~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~  317 (716)
                      ...    +.....+.|...+...   .... ..  ..+.   ...+.|.++...+.+.|+|.|.|..|........  ..
T Consensus       139 ~g~----~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~--~~  212 (523)
T 2rcj_C          139 SDF----YPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP--TE  212 (523)
T ss_pred             ccc----cCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceee--ee
Confidence            322    1111123332222110   0000 00  0010   1368899999999999999999987743221110  00


Q ss_pred             ecCCCCCCC-CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceE-EEe-eecCC-----CCeEEecCC
Q psy7040         318 AKNPFNQPG-KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE-KCA-QTEGD-----TPKGKVLDL  389 (716)
Q Consensus       318 ~~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~-~~~-~~~~~-----~~~~~i~~l  389 (716)
                      .......|. .+.........+..+.|.|...... ..+   ..|.|...+...-. ... .....     ...+.|..+
T Consensus       213 ~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~-P~p---~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~  288 (523)
T 2rcj_C          213 CSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF-PQP---VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSS  288 (523)
T ss_pred             cCCCCcCCEEEecCCCcccccCCceEEEEEEecee-CCC---eEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechh
Confidence            000001110 0000000112345566666542110 001   12233222211000 000 00001     236788888


Q ss_pred             CCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccE-EEecCCeEEEEEEEeccCC----CeEEEEeCC
Q psy7040         390 IEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDI-KVRAGSNFEFDINVIGEPI----PTKEWLCND  464 (716)
Q Consensus       390 ~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~-~~~~g~~~~~~~~v~~~p~----~~~~W~~~~  464 (716)
                      ...+ ..|+|.|.|..|.........      ....|.+....+... .+..|..+.|.|.+.+.++    +.+.|++++
T Consensus       289 ~~~d-G~Y~C~a~n~~g~~~~~~~l~------v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g  361 (523)
T 2rcj_C          289 SLGT-QTYICNVNHKPSNTKVDKRVE------PLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDG  361 (523)
T ss_pred             hcCC-ceEEEEEEeCCCCcceEEecC------CCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECC
Confidence            8888 999999999988643221111      111233322222222 2678999999999998654    489999999


Q ss_pred             eEeccCCcEEEEeC-CC----eEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE----E---EEEEEEeCCC-CCCC
Q psy7040         465 ITIISKDRFKIVND-DK----STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV----L---GCSLKWNPPE-DDGG  531 (716)
Q Consensus       465 ~~~~~~~~~~~~~~-~~----~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v----~---~v~l~W~~p~-~~~~  531 (716)
                      ..+........... ..    ...|.|.++..+|.|.|+|.|.|..+.......+.+    .   .+.+.-.... ..++
T Consensus       362 ~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~~~  441 (523)
T 2rcj_C          362 VQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKN  441 (523)
T ss_pred             eEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCEEEEeCCChHHccCC
Confidence            88765443221111 11    235889999999999999999998887665544442    1   2222211110 1123


Q ss_pred             CceeeEEEEEEecCCCceeeeEEEccceeeeecc----cccee------EEEEcCCCCCCeEEEEEEEEcCCC
Q psy7040         532 APIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN----VDYFT------KITIRPLQRSDTAQYTVTATNSQG  594 (716)
Q Consensus       532 ~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~----~~~~~------~~~i~~L~~~~~y~~~v~a~n~~G  594 (716)
                      .....|.+...+..  ...+.|++.+........    .....      .+.+......+.+.|.|.|.|...
T Consensus       442 ~~~l~C~~~g~~p~--~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~~l  512 (523)
T 2rcj_C          442 QVSLTCLVKGFYPS--DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  512 (523)
T ss_pred             ceEEEEEEEeeECC--CCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcCCc
Confidence            33455665543332  124899998765431110    01111      122333333557899999999664

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.74  E-value=1e-16  Score=163.87  Aligned_cols=308  Identities=17%  Similarity=0.124  Sum_probs=189.8

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCCCce-eEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEE
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENINGKDS-VEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVD  261 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~-~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~  261 (716)
                      .+.+|.|.+++..|+|.|+|.|.|..|... ..+.+.+...+.++..+.......++.+.|.|..+.   +.+...+.+.
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~---~~p~~~v~W~  136 (395)
T 1bih_A           60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPN---AYPKPLITWK  136 (395)
T ss_dssp             TSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCE---EESCCEEEEE
T ss_pred             CCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCC---CCCCCeEEEE
Confidence            456899999999999999999999988743 345555544443333323344456788999998421   2223334333


Q ss_pred             EEeCC----------CCCeEEccccCcccceEEEcCCCCCCeE---EEEEEEEcCCCCCCCCcccceEEecCCCCCC---
Q psy7040         262 KMDEA----------TGRWTPAGETEGPVTGLEVEGLIPNHKY---KFRVRAVNKQGKSEPLTTTASIEAKNPFNQP---  325 (716)
Q Consensus       262 ~~~~~----------~~~~~~~~~~~~~~~~~~i~~L~p~~~y---~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p---  325 (716)
                      .....          ..... .    .....+.|.++...+.+   .|+|.|.|..|..........+........+   
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~-~----~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (395)
T 1bih_A          137 KRLSGADPNADVTDFDRRIT-A----GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG  211 (395)
T ss_dssp             EEETTSCGGGCCCCCCTTEE-E----CTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCC
T ss_pred             ecCCCcCcccccccccccEE-E----cCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccC
Confidence            33200          11111 1    12347889999988888   9999999988764322111111100000000   


Q ss_pred             -CC----CCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC-----CceEEEeeecCCCCeEEecCCCCCCeE
Q psy7040         326 -GK----PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS-----PIWEKCAQTEGDTPKGKVLDLIEGNQY  395 (716)
Q Consensus       326 -~~----p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~~~~Y  395 (716)
                       ..    +..  .....+..+.|.|.....+.. .+.     |...+.     ...............+.|.++...+.+
T Consensus       212 ~~~p~~~~~~--~~~~~G~~v~l~C~~~g~p~~-~i~-----W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  283 (395)
T 1bih_A          212 EPVPQYVSKD--MMAKAGDVTMIYCMYGSNPMG-YPN-----YFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEG  283 (395)
T ss_dssp             CCEEEEECCS--EEEETTSCEEEEEEEECSSCC-CCE-----EEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCE
T ss_pred             CcCceecCCc--eEEECCCcEEEEEEeccCCCC-eEE-----EEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCE
Confidence             00    112  223345667888865221111 122     222210     000000111123347999999999999


Q ss_pred             EEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEE
Q psy7040         396 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI  475 (716)
Q Consensus       396 ~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~  475 (716)
                      .|+|.|.|..|.......  ...+   ..+|.+.........+..|+.+.|.|.+.+.|.+.+.|++++..+... ++.+
T Consensus       284 ~Y~C~a~n~~g~~~~~~~--~l~V---~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~  357 (395)
T 1bih_A          284 VYTCEVDNGVGKPQKHSL--KLTV---VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV  357 (395)
T ss_dssp             EEEEEECCSSSSCEEEEE--EEEE---EEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE
T ss_pred             EEEEEEEeCCCCceEEEE--EEEE---EcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEE
Confidence            999999998875422111  1111   125555433333378899999999999999999999999999988654 4444


Q ss_pred             EeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         476 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       476 ~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      ..  .  .|.|.++...|.|.|+|.|.|..|....++.+.|
T Consensus       358 ~~--~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          358 TD--S--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             ET--T--EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EC--C--EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            32  2  8999999999999999999999999988887765

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.74  E-value=1.5e-16  Score=161.62  Aligned_cols=305  Identities=17%  Similarity=0.167  Sum_probs=193.3

Q ss_pred             ccEEEEecccc-CcceEEEEEEEeCCCCc-eeEEEEEEecCCCCCCC-CeEEeEEeCCeEEEEEECCCCCCCCccceEEE
Q psy7040         184 NTKLGVRMAQR-ADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGG-PLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV  260 (716)
Q Consensus       184 ~~~l~i~~l~~-~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p~~p~~-~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v  260 (716)
                      +..|.|.++.. .|+|.|+|.|.|..|.. +..+.+.+...|..+.. +-.+....+..+.|.|..+..   .+...+.+
T Consensus        60 ~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~---~p~~~i~W  136 (382)
T 1cs6_A           60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPH---YPALSYRW  136 (382)
T ss_dssp             TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSE---ESCCEEEE
T ss_pred             CCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCC---CCCcEEEE
Confidence            45899999997 99999999999998874 33566666554433221 123455578899999985321   12233333


Q ss_pred             EEEeCC-----CCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCccc--ceEEecCCCC---CCC----
Q psy7040         261 DKMDEA-----TGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT--ASIEAKNPFN---QPG----  326 (716)
Q Consensus       261 ~~~~~~-----~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~--~~~~~~~~~~---~p~----  326 (716)
                      ......     ......    ......+.|.++...+.+.|+|.|.|..|.......+  ..+.+.....   .|.    
T Consensus       137 ~~~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~  212 (382)
T 1cs6_A          137 LLNEFPNFIPADGRRFV----SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK  212 (382)
T ss_dssp             EESSTTCBCCCCSSEEE----CTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEEC
T ss_pred             EECCCccccccCceEEE----ecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceecc
Confidence            322111     011110    1234689999999999999999999977543221111  1111111000   110    


Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  406 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g  406 (716)
                      .|.  ......+..+.|.|.....    +..  .+.|...+....   .........+.|.++...+.+.|+|.|.|..|
T Consensus       213 ~~~--~~~~~~G~~v~l~C~~~g~----p~~--~i~W~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  281 (382)
T 1cs6_A          213 FPA--DTYALTGQMVTLECFAFGN----PVP--QIKWRKLDGSQT---SKWLSSEPLLHIQNVDFEDEGTYECEAENIKG  281 (382)
T ss_dssp             CCS--EEEEETTCCEEEECEEEEE----SCC--EEEEEECCSCCS---CCCSBSSSEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CCC--ceEEeCCCeEEEEEEEccC----CCC--EEEEEECCcccc---cEEecCCcEEEEccCChhhCEEEEEEEEcCCC
Confidence            111  2233456677888765211    111  233332221100   01223566799999999999999999999887


Q ss_pred             CCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEE
Q psy7040         407 PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKV  486 (716)
Q Consensus       407 ~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i  486 (716)
                      ....+.   ...+.   .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+..    ..|.|
T Consensus       282 ~~~~~~---~l~V~---~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~----~~L~i  350 (382)
T 1cs6_A          282 RDTYQG---RIIIH---AQPDWLD-VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG----GELRF  350 (382)
T ss_dssp             EEEEEE---EEEEE---EEEEEEE-CCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEET----TEEEE
T ss_pred             eEEEEE---EEEEe---cCCCccc-CCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEEC----CEEEE
Confidence            632111   11111   2344332 2345778999999999999999999999999999988777766542    37999


Q ss_pred             CCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         487 FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       487 ~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .++...|.|.|+|.|.|..|....++.+.|.
T Consensus       351 ~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          351 SKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            9999999999999999999999888887764

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.74  E-value=2.8e-16  Score=154.65  Aligned_cols=252  Identities=13%  Similarity=0.124  Sum_probs=161.4

Q ss_pred             ccEEEecCCeEEEEEEEeccCCC-----eEEEEeCCeEe-------------ccCCcEEEEeC-----CCeEEEEECCCC
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIP-----TKEWLCNDITI-------------ISKDRFKIVND-----DKSTKLKVFDSK  490 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~-----~~~W~~~~~~~-------------~~~~~~~~~~~-----~~~~~l~i~~l~  490 (716)
                      ..+.+..|+.+.|.|.+.+.+.+     .+.|++++...             ....++.+...     ....+|.|.++.
T Consensus         8 ~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~   87 (313)
T 4fqp_A            8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLR   87 (313)
T ss_dssp             SEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCC
T ss_pred             CEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCC
Confidence            34667789999999999887766     48999987532             12223333211     134579999999


Q ss_pred             CCCceeEEEEEEc-CCCceeeEEEEEEE---EEEEEEeCCCCCCCC-ceeeEEEEEEecCCCceeeeEEEccceeeeecc
Q psy7040         491 RGDSGIYTLAVKN-SWGTDKGTAKVTVL---GCSLKWNPPEDDGGA-PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN  565 (716)
Q Consensus       491 ~~~~~~y~~~a~n-~~g~~~~s~~~~v~---~v~l~W~~p~~~~~~-~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~  565 (716)
                      ..|.|.|+|.+.+ ..|..+..+.+.+.   .+...-.......+. ....|...   ...+.+.+.|++.+........
T Consensus        88 ~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~---~~~P~~~i~W~~~~~~~~~~~~  164 (313)
T 4fqp_A           88 VEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVST---GGRPPAQITWHSDLGGMPNTSQ  164 (313)
T ss_dssp             GGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEE---EEBSCCEEEEEETTCCEEEEEE
T ss_pred             hhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEcc---CccCCcEEEeecCCccccccce
Confidence            9999999999865 44555555555444   333333322222222 12223222   1223445999988765432211


Q ss_pred             ----ccc----eeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee--ccCCCCC----CccceeeccceeEEEEEEeeE
Q psy7040         566 ----VDY----FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV--VTDKPSA----PEGPIQWLLTLTDVTWEISNY  631 (716)
Q Consensus       566 ----~~~----~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~--v~~~p~~----~~~~~~~~~~~v~l~w~i~~y  631 (716)
                          ...    ...+.+......+.+.|+|.|.|..|.......+.  |..+|..    +.......+..+.        
T Consensus       165 ~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~--------  236 (313)
T 4fqp_A          165 VPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEAT--------  236 (313)
T ss_dssp             EECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEE--------
T ss_pred             eeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEE--------
Confidence                111    13477777778888999999999888776655444  4444431    0001111233344        


Q ss_pred             EEEeeeeccCcee-----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         632 LQELHSSLMPISL-----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       632 ~v~~~~~~~~~~~-----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                            |.|.+.|     .+.|+++|..+..........|.|.++...|+|.|+|.|.|..|....+..|.|..+|
T Consensus       237 ------l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  306 (313)
T 4fqp_A          237 ------LTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP  306 (313)
T ss_dssp             ------EEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             ------EEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence                  5555555     5899999988765533344689999999999999999999999999999999998753

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.73  E-value=5.4e-17  Score=166.33  Aligned_cols=219  Identities=16%  Similarity=0.124  Sum_probs=143.9

Q ss_pred             CCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC-
Q psy7040         290 PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS-  368 (716)
Q Consensus       290 p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~-  368 (716)
                      ....+.+.|.|.|..+...........+     .+|.+|.++.. .++.+++.|+|.+|...++.++.+|.|+++..+. 
T Consensus       304 s~~~Gs~~C~C~ng~~ra~~d~~~~~ct-----~pPsaP~nl~~-~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~  377 (536)
T 3fl7_A          304 PSPEGATSCECEEGFFRAPQDPASMPCT-----RPPSAPHYLTA-VGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPE  377 (536)
T ss_dssp             CCCTTCSSCEECTTCBCCTTCCTTSCCB-----CCCCCBSCEEE-ECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-
T ss_pred             CCCCCccEEEEeccccccCCCccccccc-----cCCCcccceEE-EecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCC
Confidence            4455677899999888765444432222     46889999854 6889999999999887777689999999986421 


Q ss_pred             -CceEEE--------eeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEe
Q psy7040         369 -PIWEKC--------AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVR  439 (716)
Q Consensus       369 -~~~~~~--------~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~  439 (716)
                       ..|...        ........+++|.+|.|++.|.|+|+|.|..|.+.++.....+.....+.+|..           
T Consensus       378 ~~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~Ps~-----------  446 (536)
T 3fl7_A          378 SGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPK-----------  446 (536)
T ss_dssp             CCCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCCCE-----------
T ss_pred             CCcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeecccCCCC-----------
Confidence             122111        112346789999999999999999999999887543222222222222222220           


Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEE
Q psy7040         440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGC  519 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v  519 (716)
                                                                  +.+......                         ++
T Consensus       447 --------------------------------------------~~~~~~s~t-------------------------SV  457 (536)
T 3fl7_A          447 --------------------------------------------VRLEGRSTT-------------------------SL  457 (536)
T ss_dssp             --------------------------------------------EEEEECCC--------------------------CC
T ss_pred             --------------------------------------------CceeeccCC-------------------------eE
Confidence                                                        000000011                         89


Q ss_pred             EEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccc
Q psy7040         520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF  599 (716)
Q Consensus       520 ~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s  599 (716)
                      .|+|++|...+ +.+.+|.|+|......   ..+....         .....+.|.+|+|++.|.|+|+|.|..|.|+.+
T Consensus       458 ~LsW~pP~~~n-g~I~~Y~V~y~~~~~~---~~~~~v~---------~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S  524 (536)
T 3fl7_A          458 SVSWSIPPPQQ-SRVWKYEVTYRKKGDS---NSYNVRR---------TEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGS  524 (536)
T ss_dssp             EEEEECCTTTT-TTCSEEEEEEEEC--C---CCCEEEE---------ESSSEEECCSCCSSCEEEEEEEEECC---CEEC
T ss_pred             EEEEECCcCCC-CcccEEEEEEEECCCC---ceEEEEc---------CCCCEEEECCCCCCCEEEEEEEEEcCCcccCCC
Confidence            99999986544 5599999999987641   1111111         113889999999999999999999999999998


Q ss_pred             eeeeccCC
Q psy7040         600 IEVVVTDK  607 (716)
Q Consensus       600 ~~~~v~~~  607 (716)
                      ..+.+...
T Consensus       525 ~~v~~~T~  532 (536)
T 3fl7_A          525 KVHEFQTL  532 (536)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEEeC
Confidence            87775443

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.73  E-value=1.9e-15  Score=152.54  Aligned_cols=363  Identities=15%  Similarity=0.098  Sum_probs=219.6

Q ss_pred             CCCcceeeEEEEEccC-CCC--CCCceEEEEeC-CeEEEEecCCCCCC-CCccceEEEEEEcCCCCcE--EEecccC---
Q psy7040          39 DGGEPLEGYLVEKDRG-LDP--EGPLEVSNIHK-DGCTLKWNKPKDDG-GEPLEGYLVEKYDPETGVW--IPVGKTR---  108 (716)
Q Consensus        39 ~~~~~~~~y~~~~~~~-~~p--~~~l~~~~~~~-~s~~l~W~~p~~~~-~~~i~~y~v~~~~~~~~~~--~~~~~~~---  108 (716)
                      +.|.....|++....- +.|  |.-|.+..... ..+.|+|......- ...-..|+|+........-  .......   
T Consensus        66 ~~~~~~~~~~~~~~~~~~~p~~p~~l~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~i~i~r~~~~~~v~~~~~~~~~~~  145 (483)
T 3e0g_A           66 DFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNG  145 (483)
T ss_dssp             CC----CCCEECCSCCEECCCCCCBCCCEEETTTTEEEEEEEECGGGCCSCCEEEEEEEEESSSSCEEEEEEEEEECGGG
T ss_pred             CCCCCceeEEEEcccceeccCCCceEEEEecCCCcEEEEEEeCCCCCCCcccceEEEEEEEEcCCccEEEEEEEEEEecC
Confidence            3444567776666653 334  34477776655 79999998642110 0124568888876654432  2211111   


Q ss_pred             -CCeE---EecCC-CCCcEEEEEEEEE-ec---Cc---cCCCccccceEEecC-------CCCcccccccc--cceeccc
Q psy7040         109 -EPEM---DVTGL-TPGHEYKFRVKAL-NK---EG---ESEPLETFSSIIARD-------PYSKYTSVSSL--DSHKRSN  167 (716)
Q Consensus       109 -~~~~---~i~~L-~~~~~y~~~v~a~-~~---~g---~~~~s~~~~~~~~~~-------p~~~~~~~~~~--~~~~~~~  167 (716)
                       +..+   --.+| .+++.+.+|||+. ++   .|   +|.+|..... ....       |.......+..  ..|.+.-
T Consensus       146 ~~~~~~w~w~s~~plec~~h~v~iR~~~~~~~~~~~~~ws~Ws~~~~~-~~~~~~~~~ifP~~~vv~~GS~vt~~Ci~~~  224 (483)
T 3e0g_A          146 KDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQI-SWIPDSQTKVFPQDKVILVGSDITFCCVSQE  224 (483)
T ss_dssp             CCEEEEEEEECSSCTTSSCEEEEEEEEEECTTCCSEECCCCCCCCEEE-CCCCCSSCCEESCSEEEETTCCEEEEECCSS
T ss_pred             CCceEEEEecCCCCCCCCccEEEEEEEecccccCCCCCCcCCCChhhc-cccCCCCcEEeccCCEEeCCCCEEEEEEeCc
Confidence             1111   12234 5789999999998 33   34   3444432222 0011       11111112211  2243331


Q ss_pred             CCC----CCCceEEEEecCCccEEEEeccccC--cceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEE
Q psy7040         168 QPC----GSGMVRKVQHLDYNTKLGVRMAQRA--DAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVT  241 (716)
Q Consensus       168 ~p~----G~~~~~~~~~~~~~~~l~i~~l~~~--~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~  241 (716)
                      .-.    +...............++|.++...  ..-.|.|...    .....+.+.+..+|.+|.+ +.........++
T Consensus       225 ~~~~~~l~~~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~----~~~~g~~l~vg~PP~~P~n-lsC~s~~~~slt  299 (483)
T 3e0g_A          225 KVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTE----DNIFGTVIFAGYPPDTPQQ-LNCETHDLKEII  299 (483)
T ss_dssp             CEEEEESSSCCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEES----SCEEEEEEEEECCCCCCEE-EEEEBSSTTEEE
T ss_pred             cccceecCcccceeEEecCCEEEEEEeCCCCccCccceEEEecC----CcccceEEECcCCCCCCCc-cEEEecCCCEEE
Confidence            100    1122222234555778888888762  3456888752    2455667888899999988 788777778999


Q ss_pred             EEEECCCCCC--CCccceEEEEEEeCCCCCeEEcccc---CcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceE
Q psy7040         242 LDWKVPDDDG--GQPIEKYVVDKMDEATGRWTPAGET---EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI  316 (716)
Q Consensus       242 l~W~~p~~~~--~~~~~~y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~  316 (716)
                      ++|+++.+.+  |.+.+.|.|.++..+  ....+...   .+....+.+.+|.+.+.|.|+|.|.|..|.+... .  .+
T Consensus       300 CsW~pg~dt~l~G~~~t~YtL~y~~~g--~~~~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~S~-~--~~  374 (483)
T 3e0g_A          300 CSWNPGRVTALVGPRATSYTLVESFSG--KYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQST-I--LV  374 (483)
T ss_dssp             EEEECCSCCSCCGGGCCEEEEEETTTC--CEEEECCCSSCSCSCEEEEEECCTTCCCEEEEEEEECSSCEEEEE-E--EE
T ss_pred             EEECCCCcCCcCCCCCeeEEEEEEECC--CCccccCCcccCCCEEEEEEccCCCCcEEEEEEEEEeCCCCcccc-e--EE
Confidence            9999866542  445789999986542  22333321   1245678999999999999999999999876522 1  12


Q ss_pred             EecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc-eEEEeeec--CCCCeEEecCCCCCC
Q psy7040         317 EAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI-WEKCAQTE--GDTPKGKVLDLIEGN  393 (716)
Q Consensus       317 ~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~~~~~~--~~~~~~~i~~l~~~~  393 (716)
                      .. .....|.+|.++.+.....+.+.|+|.+|... +..+..|+|+|+..+... |.......  .....+.+.+|.|++
T Consensus       375 ~~-~~~VkP~PP~nl~v~~~~stsl~LsW~~P~~~-~~~~L~YeVrYr~~~~~~~~~~vsv~~~~~~~~s~~l~~L~PgT  452 (483)
T 3e0g_A          375 NI-TEKVYPHTPTSFKVKDINSTAVKLSWHLPGNF-AKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYT  452 (483)
T ss_dssp             CG-GGGBCCCCCEEEEECCSSSSSCCEEEECCSCC-TTSBCCCEEEEECSSSCCCEEECCCBCCSSSBCCCCCCSCCSSS
T ss_pred             Ee-ccccCCCCCeeeEEEEecCCeEEEEECCCCCC-CCceEEEEEEEEECCCCCceEEEEEeccCCceeEEEEeccCCCc
Confidence            21 23356889999998877889999999998643 335789999999876443 54322211  223467899999999


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCC
Q psy7040         394 QYEFRVLAVNKGGPGEPSDPTA  415 (716)
Q Consensus       394 ~Y~~~v~a~n~~g~~~~s~~~~  415 (716)
                      .|.|+|+|. ..|.|.+++.+.
T Consensus       453 ~Y~vrVRA~-~~g~g~WSeWS~  473 (483)
T 3e0g_A          453 LYTFRIRCS-TETFWKWSKWSN  473 (483)
T ss_dssp             SCEEEEECC-CSSCCCCCCCCC
T ss_pred             EEEEEEEEe-eCCCCCcCCCCC
Confidence            999999999 667655555443

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.73  E-value=1.9e-16  Score=145.95  Aligned_cols=194  Identities=11%  Similarity=0.102  Sum_probs=139.1

Q ss_pred             cCCCCCCCCeEEeEE-eCCeEEEEEECCCCCCCCccceEEEEEEeCCC------CCeEEcccc-CcccceEEEcCCCCCC
Q psy7040         221 DKPSPPGGPLKVSNV-HAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT------GRWTPAGET-EGPVTGLEVEGLIPNH  292 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~-~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~------~~~~~~~~~-~~~~~~~~i~~L~p~~  292 (716)
                      .+|.+|.+ +.+... ..+++.++|+++.+ ++. ...|.|.++....      ..+..+... ....+.+.+.+|.+++
T Consensus         3 ~pP~~P~~-l~c~~~~~~~~~~~~W~p~~~-~~~-~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~   79 (215)
T 1cd9_B            3 YPPASPSN-LSCLMHLTTNSLVCQWEPGPE-THL-PTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQ   79 (215)
T ss_dssp             CCCCCCEE-EEEEEETTTTEEEEEEECCSC-CSS-CCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTS
T ss_pred             CCCCCCee-eeeecCCCcccEEEEecCCCC-CCC-ceeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccce
Confidence            36778877 777766 57899999997654 443 4679999876432      224444321 2244677888999999


Q ss_pred             eEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEee------eCCeEEEEecCCCCCCCccceEEEEEEe-e
Q psy7040         293 KYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF------DTDFVELAWTPPEQNGGSPIVGYIIEKK-E  365 (716)
Q Consensus       293 ~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~------~~~~i~l~W~~p~~~~~~~i~~y~v~~~-~  365 (716)
                      .|.|+|.|.|..|.+.. ...  .........|.+|.++.+...      ..+++.|+|.+|.. ++..+.+|.|+|+ .
T Consensus        80 ~Y~~~V~A~N~~G~~~s-~~~--~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~-~~~~~l~Y~v~y~~~  155 (215)
T 1cd9_B           80 YMAIWVQAENMLGSSES-PKL--CLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKP-SEYMEQECELRYQPQ  155 (215)
T ss_dssp             CEEEEEEEEETTEEEEC-CCE--EECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGG-GTTSCEEEEEEEEES
T ss_pred             EEEEEEEEECCCCCccC-ccE--EEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCC-CCeEEEEEEEEEccC
Confidence            99999999999886532 111  111112245788888887765      57889999999765 3434579999999 6


Q ss_pred             cCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeec
Q psy7040         366 KYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~  421 (716)
                      .+...|............+.|.+|.|++.|.|+|+|.+..|.|.+|+.+..+...+
T Consensus       156 ~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T  211 (215)
T 1cd9_B          156 LKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRP  211 (215)
T ss_dssp             STTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECC
T ss_pred             CCCCCcEEEecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceec
Confidence            66677876544445567899999999999999999999988888887776665543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.73  E-value=4.4e-16  Score=158.85  Aligned_cols=247  Identities=10%  Similarity=0.105  Sum_probs=152.6

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      .+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.....+.. .......|.|.++...|.|.|+|.|.|..|.....+.+
T Consensus        57 ~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l  135 (423)
T 3qs7_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV  135 (423)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEE
T ss_pred             cEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceecc-ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEE
Confidence            78899999999999999999999999999887654322110 11123479999999999999999999999987777666


Q ss_pred             EEEEE-EEEEeCCC--CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEE-cCCCCCCeEEEEEEEE
Q psy7040         515 TVLGC-SLKWNPPE--DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITI-RPLQRSDTAQYTVTAT  590 (716)
Q Consensus       515 ~v~~v-~l~W~~p~--~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i-~~L~~~~~y~~~v~a~  590 (716)
                      .+... .+.-..|.  ..++.....|.+...    +.|.+.|++.+................. .-|...+.+.|+|.|.
T Consensus       136 ~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~----P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~  211 (423)
T 3qs7_E          136 SIRNTLLYTLRRPYFRKMENQDALVCISESV----PEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCAR  211 (423)
T ss_dssp             EEC-----CEEEEEEEECSSSSCEEEEEEES----SCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEE
T ss_pred             EEecCccccccCCcEeccCCceEEEEEEeee----cCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEE
Confidence            66510 00000000  112222345555443    4455999987653311000000000000 1125678889999999


Q ss_pred             cCCCCCccc-eeeeccCCCCCCcc-ceeeccceeEEEEEEeeEEEEeeeeccCcee-----eEEEEeCCeEeeecc----
Q psy7040         591 NSQGKDQVF-IEVVVTDKPSAPEG-PIQWLLTLTDVTWEISNYLQELHSSLMPISL-----ESQYLMNDKRVTIDN----  659 (716)
Q Consensus       591 n~~G~~~~s-~~~~v~~~p~~~~~-~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~-----~~~W~~~~~~~~~~~----  659 (716)
                      |..|..... ..+.|..+|..+.. .....+..+.              |.|.+.|     .+.|+++|..+....    
T Consensus       212 N~~G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~--------------L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~  277 (423)
T 3qs7_E          212 NELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLW--------------IRCKAVHVNHGFGLTWELENKALEEGNYFEM  277 (423)
T ss_dssp             CSSCEEEEECEEEESSSCCCSSTTEEEEETTSCEE--------------EEEEEEESSSCCCEEEEESSSBCCGGGEEEE
T ss_pred             cCCCCcceeeEEEEEecCCccCCCceEEeCCCeEE--------------EEEEEEcCCCCcEEEEEECCEEccccceeec
Confidence            999865432 33446555543331 2222344454              5555554     689999998764421    


Q ss_pred             --------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy7040         660 --------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS  703 (716)
Q Consensus       660 --------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~  703 (716)
                              ......|.|.++...|+|.|+|.|.|.   ...++.|.|..+|.
T Consensus       278 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~  326 (423)
T 3qs7_E          278 STYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGF  326 (423)
T ss_dssp             EEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCE
T ss_pred             ccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCc
Confidence                    112247999999999999999999998   77788899887654

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.72  E-value=5.6e-16  Score=158.42  Aligned_cols=209  Identities=15%  Similarity=0.158  Sum_probs=138.2

Q ss_pred             eccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCC-----CccceEEEEEEe
Q psy7040         190 RMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGG-----QPIEKYVVDKMD  264 (716)
Q Consensus       190 ~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~-----~~~~~y~v~~~~  264 (716)
                      ..+...+.|.|++.|.|..|. ...+.+.-..+|.||.+ +.+.... +.+.|+|++|.....     .....|.|+++.
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~v~p~pP~~-l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~  153 (419)
T 2gys_A           77 QSFVVTDVDYFSFQPDRPLGT-RLTVTLTQHVQPPEPRD-LQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKR  153 (419)
T ss_dssp             SCCCTTCEEEEEEEESSCCCE-EEEEEGGGSBCCCCCEE-EEEEEET-TEEEEEEECCC-----CCSCGGGEEEEEEEEE
T ss_pred             cceeeecccEEEEeCCccccc-cceEcHHHcccCCCCCc-eEEEecC-CeEEEEECCCccccccchhccCceEEEEEEcc
Confidence            455567788889988776663 22222222247888887 7877655 699999998765321     235689999988


Q ss_pred             CCCCCeEEccccCcccceEEEc--CCCCCCeEEEEEEEEcCC---CCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCC
Q psy7040         265 EATGRWTPAGETEGPVTGLEVE--GLIPNHKYKFRVRAVNKQ---GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTD  339 (716)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~i~--~L~p~~~y~~~v~a~n~~---g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~  339 (716)
                      .. ..|............+.+.  +|.|++.|.++|+|.+..   +.+.+|..+..+...++...|.+|.++.+......
T Consensus       154 ~~-~~w~~~~~~~~~~~~~~~~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~~~~p~~l~c~~~~~~  232 (419)
T 2gys_A          154 LQ-DSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAA  232 (419)
T ss_dssp             TT-SCSTTCEEEEESSSEEEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCCTTSCEEEEEEECSSS
T ss_pred             CC-CChhheeeecccceEEEechhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeeccccccCCCceEEEEECCce
Confidence            75 5665443322234555666  999999999999999964   34667766666777776677888999999988888


Q ss_pred             eEEEEecCCCCCCCccceEEEEEEeecCC-C----c-eEEEeeec---C------CCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         340 FVELAWTPPEQNGGSPIVGYIIEKKEKYS-P----I-WEKCAQTE---G------DTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       340 ~i~l~W~~p~~~~~~~i~~y~v~~~~~~~-~----~-~~~~~~~~---~------~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      .+.+.|.++....+  -..|.|+|+.... +    . +..+....   .      ....+.+.+|.+.+.|.++|.|.+.
T Consensus       233 ~l~c~W~~~~~~~~--~~~y~l~y~~~~~~g~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~~~l~~~~~y~i~V~a~~~  310 (419)
T 2gys_A          233 VLSCSWEVRKEVAS--SVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRA  310 (419)
T ss_dssp             EEEEEEEEEHHHHT--TCCEEEEEECC-----CCCCCCEECCCEEEECCTTTEEEEEEEEECSCTTTCCEEEEEEEECCC
T ss_pred             EEEeEEECCCCCCC--ceeEEEEEEecCccccccCcccccCCCcccccCCCcceeEEeEEECccCCccCEEEEEEEEccC
Confidence            99999998421111  2459999876532 1    1 22221111   1      1225667788888999999998643

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.72  E-value=3.2e-16  Score=154.35  Aligned_cols=247  Identities=14%  Similarity=0.167  Sum_probs=163.9

Q ss_pred             cEEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040         435 DIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  513 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~  513 (716)
                      .+.+.+|..+.+.|... +.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|... +..
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~   88 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYL   88 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEE
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEE
Confidence            47788999988888874 6789999999999999888889888888888999999999999999999999988554 333


Q ss_pred             EEEE-----------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecc-------ccce
Q psy7040         514 VTVL-----------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN-------VDYF  569 (716)
Q Consensus       514 ~~v~-----------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~-------~~~~  569 (716)
                      +.+.                 .+..........++.....|.+.   ...+.+.+.|++.+........       ....
T Consensus        89 l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~---~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~  165 (312)
T 2y23_A           89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAE---KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI  165 (312)
T ss_dssp             ECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEES---CCCSSCEEEEEETTEEECSSSSCEEEEETTTTE
T ss_pred             EEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEE---eCCCCCEEEEEECCEECeeCCcEEEEEccCCCE
Confidence            3321                 00000011111222222333332   0234455999988765432211       1223


Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee------c---c-------CCCCCCcc-----ceeeccceeEEEEEE
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV------V---T-------DKPSAPEG-----PIQWLLTLTDVTWEI  628 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~------v---~-------~~p~~~~~-----~~~~~~~~v~l~w~i  628 (716)
                      ..+.|.++...+.+.|+|.|.|..+.......+.      +   +       .....|.+     .....+..+.     
T Consensus       166 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~-----  240 (312)
T 2y23_A          166 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL-----  240 (312)
T ss_dssp             EEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEE-----
T ss_pred             EEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEE-----
Confidence            4499999999999999999987544332222221      0   0       00011220     1111223333     


Q ss_pred             eeEEEEeeeeccCcee-----eEEEEeCCeEeeec----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         629 SNYLQELHSSLMPISL-----ESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       629 ~~y~v~~~~~~~~~~~-----~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                               |.|.+.|     .+.|+++|..+..+    .......|.|.++...|+|.|+|.|.|..|....++.|.+.
T Consensus       241 ---------l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          241 ---------LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             ---------EEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             ---------EEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence                     5566555     78999999998744    22334799999999999999999999999999988888764

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.72  E-value=1.7e-16  Score=154.58  Aligned_cols=249  Identities=20%  Similarity=0.300  Sum_probs=163.8

Q ss_pred             cccEEEecCCeEEEEEEEeccC-CCeEEEEe-CCeEecc-CCcEEEE-eCCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEP-IPTKEWLC-NDITIIS-KDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p-~~~~~W~~-~~~~~~~-~~~~~~~-~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      +....+..|+.+.|.|.+.+.+ .+.+.|++ ++..+.. ..++.+. .......|.|.++...|.|.|+|.|.|..|..
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~   88 (291)
T 1qz1_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   88 (291)
T ss_dssp             SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCE
T ss_pred             CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCe
Confidence            3456799999999999999987 68999999 6766653 3344433 34567799999999999999999999998643


Q ss_pred             -eeEEEEEEE-EEEEEEeCCC----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec----cccceeEEEEcCCC
Q psy7040         509 -KGTAKVTVL-GCSLKWNPPE----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID----NVDYFTKITIRPLQ  578 (716)
Q Consensus       509 -~~s~~~~v~-~v~l~W~~p~----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~i~~L~  578 (716)
                       +....+.+. ...+.- .+.    ..+......|.+.    +.+.+.+.|++.+.......    .......+.|.++.
T Consensus        89 ~~~~~~l~v~~~~~~~~-~~~~~~~~~g~~v~l~C~~~----~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  163 (291)
T 1qz1_A           89 SEATVNVKIFQKLMFKN-APTPQEFKEGEDAVIVCDVV----SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIK  163 (291)
T ss_dssp             EEEEEEEEEECCSEEEE-CCSSEEEETTSCEEECCEEE----CSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCC
T ss_pred             eEEEEEEEeeccccccC-CCCcccccCCCeEEEEEEec----cCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCc
Confidence             344555544 111111 111    1122222333333    33445599999876542111    11123579999999


Q ss_pred             CCCeEEEEEEEEcCCCCCcccee--eeccCCCCCCc-----cceeeccceeEEEEEEeeEEEEeeeeccCcee----eEE
Q psy7040         579 RSDTAQYTVTATNSQGKDQVFIE--VVVTDKPSAPE-----GPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQ  647 (716)
Q Consensus       579 ~~~~y~~~v~a~n~~G~~~~s~~--~~v~~~p~~~~-----~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~  647 (716)
                      ..+.+.|+|.|.|..+....+..  +.+..+|....     ......+..+.              |.|.+.|    .+.
T Consensus       164 ~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~--------------l~C~~~g~p~p~i~  229 (291)
T 1qz1_A          164 KTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVT--------------LVCDADGFPEPTMS  229 (291)
T ss_dssp             GGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEE--------------EEEEEEEESCCEEE
T ss_pred             cccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEE--------------EEEEEEEeCCCcEE
Confidence            99999999999997643322222  22333332111     01111233444              5555555    899


Q ss_pred             EEeCCeEeeecc--------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         648 YLMNDKRVTIDN--------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       648 W~~~~~~~~~~~--------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |+++|..+....        ......|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       230 W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          230 WTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             EEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            999999876542        11235799999999999999999999999999999998875

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.71  E-value=5.2e-16  Score=142.25  Aligned_cols=185  Identities=21%  Similarity=0.234  Sum_probs=136.1

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccC-cccceEE--EcCCCCCCeEEEE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE-GPVTGLE--VEGLIPNHKYKFR  297 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~-~~~~~~~--i~~L~p~~~y~~~  297 (716)
                      .+|.+|.+ +.+.....+++.++|+++.+ ++. ...|.|+++......|..+.... .....+.  +.+|.+++.|.|+
T Consensus         2 ~pP~~P~n-l~c~~~~~~~~~c~W~p~~~-~~~-~~~Y~l~y~~~~~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~   78 (210)
T 3n06_B            2 LPPGKPEI-FKCRSPNKETFTCWWRPGTD-GGL-PTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMM   78 (210)
T ss_dssp             CCCCCCEE-EEEEBSSSSCEEEEEECCSS-SCC-CSEEEEEEEETTCCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEE
T ss_pred             CCCCCCeE-eEEEeCCCCeEEEEECCCCC-CCC-CceEEEEEEECCCCccccCCCCCCCCCeEEEeCCCCcccceeEEEE
Confidence            47888887 88887788999999997654 333 47999999887767788775321 1233444  4579999999999


Q ss_pred             EEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeee----CCeEEEEecCCCCCC---CccceEEEEEEeecCCCc
Q psy7040         298 VRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFD----TDFVELAWTPPEQNG---GSPIVGYIIEKKEKYSPI  370 (716)
Q Consensus       298 v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~----~~~i~l~W~~p~~~~---~~~i~~y~v~~~~~~~~~  370 (716)
                      |.|.|..|.+......  +. ......|.+|.++.+....    .+++.|+|.+|....   |..+.+|+|+|+..++..
T Consensus        79 V~A~N~~G~~~s~~~~--~~-~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~~~  155 (210)
T 3n06_B           79 VNATNQMGSSFSDELY--VD-VTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAE  155 (210)
T ss_dssp             EEEEETTEEEECCCEE--EC-GGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTCSS
T ss_pred             EEEEcCCCCeeCCcEE--Ec-hhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCCCC
Confidence            9999999876322211  11 1122457889888887654    578999999976543   224689999999877677


Q ss_pred             eEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCC-CCCCCC
Q psy7040         371 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP-GEPSDP  413 (716)
Q Consensus       371 ~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~-~~~s~~  413 (716)
                      |....  ......+.|.+|.+++.|.|+|+|.+..|. |.+|..
T Consensus       156 ~~~~~--~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~  197 (210)
T 3n06_B          156 WEIHF--AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPA  197 (210)
T ss_dssp             CEEEE--EETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCC
T ss_pred             CEEEe--ccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCc
Confidence            86543  345678999999999999999999998664 555544

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.71  E-value=2.3e-16  Score=154.97  Aligned_cols=252  Identities=15%  Similarity=0.128  Sum_probs=159.3

Q ss_pred             cEEEecCCeEEEEEEEec-cCCCeEEEEeCCeEecc-----------------CCcEEEEe-CCCeEEEEECCCCCCCce
Q psy7040         435 DIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIIS-----------------KDRFKIVN-DDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~~~~~~-----------------~~~~~~~~-~~~~~~l~i~~l~~~~~~  495 (716)
                      .+.+..|+.+.|.|.+.+ .+.+.+.|++++.....                 ..+..+.. .....+|.|.++..+|.|
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   87 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG   87 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence            367889999999999864 44557999986532110                 11111111 123457999999999999


Q ss_pred             eEEEEEEcC-CCceeeEEEEEEE---EEEEEEeCCC-CC-CCC-ceeeEEEEEEecCCCceeeeEEEccceeeeeccc--
Q psy7040         496 IYTLAVKNS-WGTDKGTAKVTVL---GCSLKWNPPE-DD-GGA-PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNV--  566 (716)
Q Consensus       496 ~y~~~a~n~-~g~~~~s~~~~v~---~v~l~W~~p~-~~-~~~-~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~--  566 (716)
                      .|+|.|.|. .|.......+.+.   .+.+.-.+.. .. .+. ....|..   ..+.+.+.+.|++.+.........  
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~---~~g~P~~~i~W~~~~~~~~~~~~~~~  164 (308)
T 4fom_A           88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIA---ATGKPVAHIDWEGDLGEMESTTTSFP  164 (308)
T ss_dssp             EEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEE---EEEBSCCEEEECCCSSBCCEEEEECT
T ss_pred             EEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEe---cCCcCCceEEEEECCcccccccceee
Confidence            999999986 4455555555554   2222211211 11 111 1122221   122234559999876654322110  


Q ss_pred             ----cceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee--ccCCCCCCc---c-ceeeccceeEEEEEEeeEEEEee
Q psy7040         567 ----DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV--VTDKPSAPE---G-PIQWLLTLTDVTWEISNYLQELH  636 (716)
Q Consensus       567 ----~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~--v~~~p~~~~---~-~~~~~~~~v~l~w~i~~y~v~~~  636 (716)
                          .....+.|......+.+.|+|.|.|..|.......+.  |..+|....   . .....+..+.             
T Consensus       165 ~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~-------------  231 (308)
T 4fom_A          165 NETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVN-------------  231 (308)
T ss_dssp             TSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCE-------------
T ss_pred             eecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEE-------------
Confidence                1124688889999999999999999988776555444  444442111   0 1111233344             


Q ss_pred             eeccCcee-----eEEEEeCCeEeeec-ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy7040         637 SSLMPISL-----ESQYLMNDKRVTID-NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS  703 (716)
Q Consensus       637 ~~~~~~~~-----~~~W~~~~~~~~~~-~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~  703 (716)
                       |.|.+.|     .+.|++++..+... .......+.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus       232 -l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          232 -LKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             -EECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred             -EEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence             5666665     58999998877655 223336677899999999999999999999999999999999885

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.71  E-value=7.2e-17  Score=167.92  Aligned_cols=379  Identities=12%  Similarity=0.046  Sum_probs=198.2

Q ss_pred             ccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCC-CCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEE
Q psy7040         184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPG-GPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDK  262 (716)
Q Consensus       184 ~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~-~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~  262 (716)
                      ...|.|.+++. |.| |+|.|.|..+..+..+.|.|..+|.... .+.......++.+.|.|.....   .+...+.+.|
T Consensus        49 ~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~---~~~~~~~v~W  123 (450)
T 1z7z_I           49 RKVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGG---APRANLTVVL  123 (450)
T ss_dssp             EEEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECC---BCGGGEEEEE
T ss_pred             ceEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCC---CCCcCcEEEE
Confidence            34799999988 999 9999988777778888888887664321 1111234468899999996432   1232333444


Q ss_pred             EeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCc-----ccceEEecCCCCCCCCCCC-cEEEee
Q psy7040         263 MDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLT-----TTASIEAKNPFNQPGKPGT-PEIKDF  336 (716)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~-----~~~~~~~~~~~~~p~~p~~-~~~~~~  336 (716)
                      ...+................+.|.++...+.+.|+|.|.|..|......     ....+.+..  .++.+|.. ......
T Consensus       124 ~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~--~~~~~p~~~~~~~v~  201 (450)
T 1z7z_I          124 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFV--LPATPPQLVSPRVLE  201 (450)
T ss_dssp             EETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECC--CCSSCCEEECCSEEE
T ss_pred             eeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeec--cCCCCCEecCceeEE
Confidence            3332111000001122345899999999999999999999877432100     000111111  11122221 001223


Q ss_pred             eCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEE-ecCCCCCC--eEEEEEEEEeCCCCCCCCCC
Q psy7040         337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGK-VLDLIEGN--QYEFRVLAVNKGGPGEPSDP  413 (716)
Q Consensus       337 ~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~~--~Y~~~v~a~n~~g~~~~s~~  413 (716)
                      .+..+.|.|......   +.....+.|...+........ ......... ..++...+  .|.|+|.|.|..|....+  
T Consensus       202 ~G~~v~l~C~~~g~~---P~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~--  275 (450)
T 1z7z_I          202 VDTQGTVVCSLDGLF---PVSEAQVHLALGDQRLNPTVT-YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL--  275 (450)
T ss_dssp             TTSEEEEEEEEESCT---TGGGCEEEEEETTEECCCEEE-EETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEE--
T ss_pred             eCCcEEEEEEeeCCC---CCCceEEEEeCCCEeCCceEE-ecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEE--
Confidence            466778888762210   211223334333211000111 111111111 11345555  459999999987754221  


Q ss_pred             CCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCC
Q psy7040         414 TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD  493 (716)
Q Consensus       414 ~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~  493 (716)
                       ....+... .+|.+.   .....+.+|+.+.|.|.+.  |.+.+.|  ++..+.        ..+....|.|.++..+|
T Consensus       276 -~~l~V~~~-~~p~i~---~~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~--------~~~~~~~L~i~~~~~~d  338 (450)
T 1z7z_I          276 -QTVTIYSF-PAPNVI---LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQ--------PLGPRAQLLLKATPEDN  338 (450)
T ss_dssp             -EEEEEECC-CCCEEE---ESCSEEETTCEEEEEEEC----------------------------CCCCCEEEECCGGGT
T ss_pred             -EEEEEecC-CCCeEe---cCCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcC--------CCCceEEEEEecCcccC
Confidence             11122111 135544   2245789999999999987  8899999  555541        11233479999999999


Q ss_pred             ceeEEEEEEcCCC-ce---eeEEEEEEE-EEEEEEeC-CC----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeee
Q psy7040         494 SGIYTLAVKNSWG-TD---KGTAKVTVL-GCSLKWNP-PE----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTI  563 (716)
Q Consensus       494 ~~~y~~~a~n~~g-~~---~~s~~~~v~-~v~l~W~~-p~----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~  563 (716)
                      .|.|+|.|.|..+ ..   ..+..+.+. ...+.-.. |.    ..+......|.+...    +.|.+.|++.+......
T Consensus       339 ~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~----P~p~i~W~~~g~~~~~~  414 (450)
T 1z7z_I          339 GRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN----PLPELKCLKDGTFPLPI  414 (450)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEE----SCCEEEEEETTTEECCT
T ss_pred             CceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccC----CCCcEEEEECCcccCCC
Confidence            9999999997655 32   244444444 11111000 00    011111233433333    34459999988632211


Q ss_pred             ccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeec
Q psy7040         564 DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  604 (716)
Q Consensus       564 ~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v  604 (716)
                           ...+   .+...+.+.|+|.|.|..|....+..+.|
T Consensus       415 -----g~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  447 (450)
T 1z7z_I          415 -----GESV---TVTRDLEGTYLCRARSTQGEVTREVTVNV  447 (450)
T ss_dssp             -----TSCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             -----CCeE---eEehhhCeEEEEEEEeCCCceeEEEEEEE
Confidence                 1222   57788999999999999997766655544

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.71  E-value=4.7e-16  Score=158.87  Aligned_cols=362  Identities=15%  Similarity=0.107  Sum_probs=206.9

Q ss_pred             ecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCC---CC-CeEEccccCcccceEEEcCCCCCCeEE
Q psy7040         220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA---TG-RWTPAGETEGPVTGLEVEGLIPNHKYK  295 (716)
Q Consensus       220 ~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~---~~-~~~~~~~~~~~~~~~~i~~L~p~~~y~  295 (716)
                      ..+|.....|-.+....++.++|.|....   +.+...+.+......   .. ....    .....++.|.++...+.+.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~---~~p~~~v~W~k~g~~~~~~~~~~~~----~~~~~~L~i~~~~~~D~G~   76 (395)
T 1bih_A            4 DKYPVLKDQPAEVLFRENNPTVLECIIEG---NDQGVKYSWKKDGKSYNWQEHNAAL----RKDEGSLVFLRPQASDEGH   76 (395)
T ss_dssp             -CCCEECCCCSEEEEETTSCEEECCCEES---CCSSCEEEEEESSSBCCTTTTTEEE----CTTSCCEEESSCCGGGCEE
T ss_pred             CCCCEeecCCCceEEeCCCEEEEEEEEec---CCCCceEEEEECCcCcccccceEEE----ecCCceEEEecCCCCCCcE
Confidence            34443333333455567889999998633   123334443331110   00 0111    1234689999999999999


Q ss_pred             EEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC-CCceE--
Q psy7040         296 FRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-SPIWE--  372 (716)
Q Consensus       296 ~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~--  372 (716)
                      |+|.|.|..|........  +.+.....++..|.  ......+..+.|.|..+..   .+...+..+..... .....  
T Consensus        77 Y~C~a~n~~g~~~s~~~~--l~v~~~~~p~~~~~--~~~~~~G~~v~l~C~~~~~---~p~~~v~W~~~~~~~~~~~~~~  149 (395)
T 1bih_A           77 YQCFAETPAGVASSRVIS--FRKTYLIASPAKTH--EKTPIEGRPFQLDCVLPNA---YPKPLITWKKRLSGADPNADVT  149 (395)
T ss_dssp             EEEEEEETTEEEECCCEE--EEEEEEECCCCEEE--EECCBTTEEEEECCCCCEE---ESCCEEEEEEEETTSCGGGCCC
T ss_pred             EEEEEEeCCCeEEeEEEE--EEEEEeecCCcCCc--ceeeeeCCcEEEEecCCCC---CCCCeEEEEecCCCcCcccccc
Confidence            999999987754221111  11110001111111  1222345678888874211   11122222221100 00000  


Q ss_pred             --EEeeecCCCCeEEecCCCCCCeE---EEEEEEEeCCCCCCCCCCCCceEeecC-------CCCCcccccccccEEEec
Q psy7040         373 --KCAQTEGDTPKGKVLDLIEGNQY---EFRVLAVNKGGPGEPSDPTAPHIARAK-------KVSPYINRDQLSDIKVRA  440 (716)
Q Consensus       373 --~~~~~~~~~~~~~i~~l~~~~~Y---~~~v~a~n~~g~~~~s~~~~~~~~~~~-------~~~P~~~~~~~~~~~~~~  440 (716)
                        ...........+.|.++...+.+   .|+|.|.|..|................       ..+|.+   .+....+..
T Consensus       150 ~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~  226 (395)
T 1bih_A          150 DFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY---VSKDMMAKA  226 (395)
T ss_dssp             CCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE---ECCSEEEET
T ss_pred             cccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee---cCCceEEEC
Confidence              00001122346888888877777   999999998876432111000000000       112322   245678999


Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEE--eCCCeEEEEECCCCCCCceeEEEEEEcCCCceee-EEEEEEE
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV--NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVL  517 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~-s~~~~v~  517 (716)
                      |+.+.|.|.+.+.|.+.+.|++++..+......++.  .......|.|.++...|.|.|+|.|.|..|.... +..+.+.
T Consensus       227 G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  306 (395)
T 1bih_A          227 GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV  306 (395)
T ss_dssp             TSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             CCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEE
Confidence            999999999999999999999999887654332222  2233458999999999999999999999998655 6777766


Q ss_pred             -EEEEEEeCCC----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcC
Q psy7040         518 -GCSLKWNPPE----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS  592 (716)
Q Consensus       518 -~v~l~W~~p~----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~  592 (716)
                       ...+.-.+..    ..+......|.+...+...    +.|++.+..............+.|.++...+.+.|+|.|.|.
T Consensus       307 ~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~----v~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~  382 (395)
T 1bih_A          307 SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN----VVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNE  382 (395)
T ss_dssp             EEEEEEECCCSEEEECTTSCEEEECEEEEESCCC----CEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEET
T ss_pred             cCCccccCCCcceEecCCCeEEEEEEECcccCCe----eEEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEcc
Confidence             2222211111    2223334455555444444    999998765432111111248999999999999999999999


Q ss_pred             CCCCccceee
Q psy7040         593 QGKDQVFIEV  602 (716)
Q Consensus       593 ~G~~~~s~~~  602 (716)
                      .|....+..+
T Consensus       383 ~G~~~~~~~l  392 (395)
T 1bih_A          383 HGDKYFETLV  392 (395)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCCceEEEEE
Confidence            9976555444

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.71  E-value=2.9e-15  Score=153.38  Aligned_cols=351  Identities=17%  Similarity=0.140  Sum_probs=207.1

Q ss_pred             EeEEeCCeEEEEEECCCCCCCCccceEEEEEEeC--C---CCCeEEccccCcccceEEEcCC-----CCCCeEEEEEEEE
Q psy7040         232 VSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDE--A---TGRWTPAGETEGPVTGLEVEGL-----IPNHKYKFRVRAV  301 (716)
Q Consensus       232 ~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~--~---~~~~~~~~~~~~~~~~~~i~~L-----~p~~~y~~~v~a~  301 (716)
                      +....++.+.|.|.....   .+...+.+.....  .   ......     .....+.|.++     ...+.+.|+|.|.
T Consensus        31 ~~v~~G~~v~L~C~~~~~---~p~~~v~W~k~g~~~~~~~~~~~~~-----~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~  102 (403)
T 3laf_A           31 AVTMRGGNVLLNCSAESD---RGVPVIKWKKDGLILALGMDDRKQQ-----LPNGSLLIQNILHSRHHKPDEGLYQCEAS  102 (403)
T ss_dssp             EEECTTCCEEECCEEECT---TCCCEEEEEETTEECCTTSCTTEEE-----CTTSCEEECSCCCBTTBCSSCEEEEEEEE
T ss_pred             eEEecCCcEEEEEEcCCC---CCCceEEEEECCEECccCCcccEEE-----ecCCcEEEeeeeccCCCCCcceEEEEEEE
Confidence            344568899999986322   1233333332110  0   011111     12346777777     6779999999999


Q ss_pred             cCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc---eEEEeeec
Q psy7040         302 NKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI---WEKCAQTE  378 (716)
Q Consensus       302 n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~---~~~~~~~~  378 (716)
                      +..+....+... .+.+..+......+..+  ....+..+.|.|.....    +..  .+.|...+...   ........
T Consensus       103 ~~~~~~~~s~~~-~l~v~~p~~~~~~~~~~--~~~~G~~v~l~C~~~~~----p~~--~v~W~~~~~~~~~~~~~~~~~~  173 (403)
T 3laf_A          103 LGDSGSIISRTA-KVMVAGPLRFLSQTESI--TAFMGDTVLLKCEVIGD----PMP--TIHWQKNQQDLNPIPGDSRVVV  173 (403)
T ss_dssp             CGGGCEEECCCE-EEEECCCCEECSCCCCE--EEETTSCEEECCCEECS----SCC--EEEEEESSSBCCCCTTCCSEEE
T ss_pred             eCCCccEEEEEE-EEEecCCCccccCCCcE--EEEcCCeEEEEEEEccc----CCC--eEEEEECCEeccccCCceEEEE
Confidence            754332222221 22332221112233333  33456678888875221    122  23333222110   00000111


Q ss_pred             CCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCC--CcccccccccEEEecCCeEEEEEEEeccCCC
Q psy7040         379 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVS--PYINRDQLSDIKVRAGSNFEFDINVIGEPIP  456 (716)
Q Consensus       379 ~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~--P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~  456 (716)
                      .....+.|.++...+.+.|+|.|.|..|.......  .......+..  +......+....+..|..+.|.|.+.+.|.+
T Consensus       174 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~--~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  251 (403)
T 3laf_A          174 LPSGALQISRLQPGDSGVYRCSARNPASTRTGNEA--EVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPP  251 (403)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCE--EEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCC
T ss_pred             cCCceEEEcccccccCEEEEEEEEcCCCceeccce--eEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCC
Confidence            23457999999999999999999998764322211  1222111111  1111223456778899999999999999999


Q ss_pred             eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEE-EEEEEeCCC----CCCC
Q psy7040         457 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG-CSLKWNPPE----DDGG  531 (716)
Q Consensus       457 ~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~-v~l~W~~p~----~~~~  531 (716)
                      .+.|++++..+...........  ...|.|.++...|.|.|+|.|.|..|..+.+..+.+.. ..+. ..+.    ..+.
T Consensus       252 ~~~W~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~-~~~~~~~~~~g~  328 (403)
T 3laf_A          252 SFTWLRGEEVIQLRSKKYSLLG--GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFL-NHPSNLYAYESM  328 (403)
T ss_dssp             EEEEEETTEECCCSSSSEEEET--TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEE-ECCCCEECCTTC
T ss_pred             eEEEEECCeeccCCCceEEECC--ccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEe-ecCcceEEecCC
Confidence            9999999988764433222222  23799999999999999999999999888888887762 2221 1221    1223


Q ss_pred             CceeeEEEEEEecCCCceeeeEEEccceeeeecc--ccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCC
Q psy7040         532 APIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN--VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  608 (716)
Q Consensus       532 ~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p  608 (716)
                      .....|.+...+.    +.+.|++.+........  ......+.|.++...+.+.|+|.|.|..|....+..+.|..||
T Consensus       329 ~v~l~C~~~g~p~----p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          329 DIEFECAVSGKPV----PTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             CEEECCEEEEESC----CEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             eEEEEEEEeeccC----CEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence            3344555544443    34999998765432211  1123679999999999999999999999988777777776654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.71  E-value=1.8e-15  Score=154.03  Aligned_cols=307  Identities=15%  Similarity=0.170  Sum_probs=190.6

Q ss_pred             CccEEEEeccccCc------ceEEEEEEEeCCCCc-eeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCcc
Q psy7040         183 YNTKLGVRMAQRAD------AGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI  255 (716)
Q Consensus       183 ~~~~l~i~~l~~~~------~g~y~c~a~n~~g~~-~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~  255 (716)
                      .++.|.|.+++..|      +|.|+|.|.|..|.. +..+.+.+..+|.....+.......++.+.|.|..+..... +.
T Consensus        57 ~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-~~  135 (388)
T 2v5m_A           57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD-FV  135 (388)
T ss_dssp             STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTT-TE
T ss_pred             CCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCC-Cc
Confidence            45689999999997      999999999999873 45677777776655443334455678899999997543211 22


Q ss_pred             ceEEEEEEeCCCCCeEEc-----cccCcccceEEEcCCCCCCe-EEEEEEEEcCCCCCC-CCcccceEEecCCC--CCCC
Q psy7040         256 EKYVVDKMDEATGRWTPA-----GETEGPVTGLEVEGLIPNHK-YKFRVRAVNKQGKSE-PLTTTASIEAKNPF--NQPG  326 (716)
Q Consensus       256 ~~y~v~~~~~~~~~~~~~-----~~~~~~~~~~~i~~L~p~~~-y~~~v~a~n~~g~~~-~~~~~~~~~~~~~~--~~p~  326 (716)
                      ..  +.|...+.......     .........+.|.++...+. +.|+|.|.|..+... .+.....+.+..+.  ..|.
T Consensus       136 ~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~  213 (388)
T 2v5m_A          136 EV--VSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPR  213 (388)
T ss_dssp             EE--EEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEE
T ss_pred             ce--EEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCc
Confidence            23  33332221110000     00001235799999999999 999999999754322 12111122222110  0111


Q ss_pred             CC---CCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC-CCceEEEe----eecCCCCeEEecCCCCCCeEEEE
Q psy7040         327 KP---GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-SPIWEKCA----QTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       327 ~p---~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~----~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      .|   ... .....+..+.|.|.....    +...  +.|...+ ........    ........+.|.++...+.+.|+
T Consensus       214 ~~~~~~~~-~~v~~G~~v~l~C~~~g~----p~p~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  286 (388)
T 2v5m_A          214 TPALVQKP-LELMVAHTISLLCPAQGF----PAPS--FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL  286 (388)
T ss_dssp             CCSSCCCC-EEEETTSCEEECCCCEEE----SCCE--EEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEE
T ss_pred             CccccCCc-eEEeeCCcEEEEEECCCC----CCCE--EEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEE
Confidence            11   111 122345678888875211    1122  2222211 11000000    00113457999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC
Q psy7040         399 VLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND  478 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~  478 (716)
                      |.|.|..|......   ...+.   .+|.+. ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+...        
T Consensus       287 C~a~n~~g~~~~~~---~l~V~---~~p~~~-~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~--------  351 (388)
T 2v5m_A          287 CVVNNSVGGESVET---VLTVT---APLSAK-IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------  351 (388)
T ss_dssp             EEEECSSCEEEEEE---EEEEE---EEEEEE-EESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC--------
T ss_pred             EEEecCCCceeEEE---EEEEe---CCCccc-cCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC--------
Confidence            99999988532111   11111   133322 1234577889999999999999999999999999887532        


Q ss_pred             CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       479 ~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                        ...|.|.++...|.|.|+|.|.|..|....++.+.+
T Consensus       352 --~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          352 --ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             --SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             --CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence              348999999999999999999999999988887765

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.69  E-value=1.5e-17  Score=165.49  Aligned_cols=261  Identities=16%  Similarity=0.160  Sum_probs=105.2

Q ss_pred             cccEEEecCCeEEEEEEEecc-CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      +..+.+..|+.+.|.|.+.+. |.+.+.|++++..+....++.+    ....|.|.++...|.|.|+|.|.|. |.....
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~   89 (334)
T 1ry7_B           15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCH   89 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe----ccceEEEeecccccCEEEEEEEEeC-CeEEEE
Confidence            567789999999999999887 5789999999988866555544    2458999999999999999999998 666555


Q ss_pred             EEEEEEEEEE----------------EEeCCCCCC-----CCc-----eeeEEEEEEecCCCceeeeEEEccceeeeec-
Q psy7040         512 AKVTVLGCSL----------------KWNPPEDDG-----GAP-----IEYYMVEKMETDTGKVLIKWIRTNDKRVTID-  564 (716)
Q Consensus       512 ~~~~v~~v~l----------------~W~~p~~~~-----~~~-----i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~-  564 (716)
                      ..+.+.....                ...+|....     ...     -....+.....+.+.+.+.|++.+....... 
T Consensus        90 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~  169 (334)
T 1ry7_B           90 FSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR  169 (334)
T ss_dssp             -----------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSS
T ss_pred             EEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccc
Confidence            5555541110                011111000     000     0012233332333456699998776543221 


Q ss_pred             -----cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCC-CCCCccceeeccceeEEEEEEeeEEEEeeee
Q psy7040         565 -----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK-PSAPEGPIQWLLTLTDVTWEISNYLQELHSS  638 (716)
Q Consensus       565 -----~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~-p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~  638 (716)
                           .......+.|.++...+.+.|+|.|.|..|.......+.|... |..|. +.........+.   .|-.+   .|
T Consensus       170 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~-~~~~~~~~~~~~---~G~~v---~l  242 (334)
T 1ry7_B          170 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI-LQAGLPANQTAV---LGSDV---EF  242 (334)
T ss_dssp             TTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCB-CCTTCSCCEEEE---SSCCE---EE
T ss_pred             ccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCc-eEecCCCceEEe---CCCCE---EE
Confidence                 1123458999999999999999999999887655555555432 22232 211111111110   12222   27


Q ss_pred             ccCcee----eEEEEe----CCeEeeeccc---------------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEE
Q psy7040         639 LMPISL----ESQYLM----NDKRVTIDNV---------------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE  695 (716)
Q Consensus       639 ~~~~~~----~~~W~~----~~~~~~~~~~---------------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~  695 (716)
                      .|.+.|    .+.|++    +|..+..+..               .....|.|.++...|+|.|+|.|.|..|....++.
T Consensus       243 ~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  322 (334)
T 1ry7_B          243 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW  322 (334)
T ss_dssp             CCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEE
T ss_pred             EEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEE
Confidence            888877    899999    6766543311               01137999999999999999999999999999999


Q ss_pred             EEEecCCCCC
Q psy7040         696 VVVTDKPSAP  705 (716)
Q Consensus       696 l~v~~~p~~p  705 (716)
                      |.|...|.+.
T Consensus       323 l~V~~~~~~~  332 (334)
T 1ry7_B          323 LVVLPAEEEL  332 (334)
T ss_dssp             EEEECSCCC-
T ss_pred             EEEEECCCCc
Confidence            9999876543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.68  E-value=1.9e-14  Score=146.44  Aligned_cols=303  Identities=14%  Similarity=0.092  Sum_probs=186.7

Q ss_pred             cceEEEcCCCCCC------eEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCC
Q psy7040         280 VTGLEVEGLIPNH------KYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGG  353 (716)
Q Consensus       280 ~~~~~i~~L~p~~------~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~  353 (716)
                      ...+.|.++...+      .+.|+|.|.|..|.....  ...+.+..+......+...  ....+..+.|.|..+.....
T Consensus        58 ~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~--~~~v~v~~~p~~~~~~~~~--~v~~G~~v~l~C~~~~~~~~  133 (388)
T 2v5m_A           58 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR--DVHVRAVVAQYYEADVNKE--HVIRGNSAVIKCLIPSFVAD  133 (388)
T ss_dssp             TTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECC--CEEEEEECCCCCCCBCCCE--EEETTSCEEECCBCCTTTTT
T ss_pred             CceEEecccChhhccccccCceEEEEEEccCCeEEec--ceEEEEccccccccCccce--eeecCCcEEEEEECcCCCCC
Confidence            4579999999887      999999999988753211  1112222111222223333  33456789999987433211


Q ss_pred             ccceEEEEEEeecCCCceEE-----EeeecCCCCeEEecCCCCCCe-EEEEEEEEeCCCCC-CCCCCCCceEeecC--CC
Q psy7040         354 SPIVGYIIEKKEKYSPIWEK-----CAQTEGDTPKGKVLDLIEGNQ-YEFRVLAVNKGGPG-EPSDPTAPHIARAK--KV  424 (716)
Q Consensus       354 ~~i~~y~v~~~~~~~~~~~~-----~~~~~~~~~~~~i~~l~~~~~-Y~~~v~a~n~~g~~-~~s~~~~~~~~~~~--~~  424 (716)
                       +  ...+.|...+......     ..........+.|.++...+. +.|+|.|.|..+.. ..+..........+  ..
T Consensus       134 -~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~  210 (388)
T 2v5m_A          134 -F--VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSS  210 (388)
T ss_dssp             -T--EEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCE
T ss_pred             -C--cceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCC
Confidence             1  1334444332110000     000012345789999999988 99999999986432 22222112222111  11


Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEe------ccCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      +|.+.........+..|+.+.|.|.+.+.|.+.+.|++++...      ....++...    ...|.|.++...|.|.|+
T Consensus       211 ~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~  286 (388)
T 2v5m_A          211 APRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV----SGTLIIKDAVVEDSGKYL  286 (388)
T ss_dssp             EEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEE----TTEEEESSCCGGGCEEEE
T ss_pred             CCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecc----cCEEEECcCCHHHCeEEE
Confidence            2332222234567889999999999999999999999974322      122233221    238999999999999999


Q ss_pred             EEEEcCCCceeeEEEEEEEE-EEEEEeCCC---CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEE
Q psy7040         499 LAVKNSWGTDKGTAKVTVLG-CSLKWNPPE---DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITI  574 (716)
Q Consensus       499 ~~a~n~~g~~~~s~~~~v~~-v~l~W~~p~---~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i  574 (716)
                      |.|.|..|.......+.+.. ..+.-.++.   ..+......|.+...+.    +.+.|++.+.....     ....+.|
T Consensus       287 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~----p~i~W~~~g~~i~~-----~~~~L~i  357 (388)
T 2v5m_A          287 CVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI----KTVSWMKDGKAIGH-----SESVLRI  357 (388)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECC----CEEEEEETTEECSC-----CSSEEEE
T ss_pred             EEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccC----CeEEEEECCEECcc-----CCCEEEE
Confidence            99999999988887777762 222222211   22333344555544433    34999998765432     2478999


Q ss_pred             cCCCCCCeEEEEEEEEcCCCCCccceee
Q psy7040         575 RPLQRSDTAQYTVTATNSQGKDQVFIEV  602 (716)
Q Consensus       575 ~~L~~~~~y~~~v~a~n~~G~~~~s~~~  602 (716)
                      .++...+.+.|+|.|.|..|....+..+
T Consensus       358 ~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  385 (388)
T 2v5m_A          358 ESVKKEDKGMYQCFVRNDRESAEASAEL  385 (388)
T ss_dssp             SSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             ecCChhhCEEEEEEEEcCCCcEEEEEEE
Confidence            9999999999999999999976665544

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.67  E-value=1.2e-16  Score=160.82  Aligned_cols=259  Identities=10%  Similarity=0.038  Sum_probs=171.2

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEE
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE  459 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~  459 (716)
                      ....+.|.++...+...|+|.|.|..+.       ....+......|.        ..+.+|+.+.|.|.+.+.|.+.+.
T Consensus        65 ~~~~L~I~~v~~~D~G~Y~C~~~n~~~~-------~~l~V~~~~~~~~--------~~v~~G~~v~l~C~~~~~p~~~v~  129 (363)
T 1wio_A           65 GNFPLIIKNLKIEDSDTYICEVEDQKEE-------VQLLVFGLTANSD--------THLLQGQSLTLTLESPPGSSPSVQ  129 (363)
T ss_dssp             TCCCEEECSCCGGGCEEEEEEETTEEEE-------EEEEEEEEEESSC--------SSEESBSCEEEEEECCTTCCCCEE
T ss_pred             CeEEEEECCCCHHHCEEEEEEEEECCCc-------EEEEEEeCCCCCc--------eEEecCCCEEEEEEcCCCCCCeEE
Confidence            4567999999999999999999887431       1111111111222        246899999999999999999999


Q ss_pred             EEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCC-------CCCC
Q psy7040         460 WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPED-------DGGA  532 (716)
Q Consensus       460 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~-------~~~~  532 (716)
                      |++++....       .   ....|.|.++...|.|.|+|.|.|..+.......+.+.      ..|..       .+..
T Consensus       130 W~~~~~~~~-------~---~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~G~~  193 (363)
T 1wio_A          130 CRSPRGKNI-------Q---GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL------AFQKASSIVYKKEGEQ  193 (363)
T ss_dssp             EECSSSCEE-------E---ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEE------CCSCSEEEEEEETBCC
T ss_pred             EEcCCCccc-------c---cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEe------cCCCCCCceEEecCCE
Confidence            999875431       1   24489999999999999999999986655554444443      11110       0111


Q ss_pred             ceeeEEEEEEecC-CCceeeeEEEccceeeee--------cc---------------ccceeEEEEcCCCCCCeEEEEEE
Q psy7040         533 PIEYYMVEKMETD-TGKVLIKWIRTNDKRVTI--------DN---------------VDYFTKITIRPLQRSDTAQYTVT  588 (716)
Q Consensus       533 ~i~~y~v~~~~~~-~~~~~~~w~~~~~~~~~~--------~~---------------~~~~~~~~i~~L~~~~~y~~~v~  588 (716)
                      ....|.+...... .+.+.+.|++.+......        ..               ......+.|.++...+.+.|+|.
T Consensus       194 v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  273 (363)
T 1wio_A          194 VEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT  273 (363)
T ss_dssp             EEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEE
T ss_pred             EEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEE
Confidence            1112211111111 234557888766543220        00               11124899999999999999999


Q ss_pred             EEcC--CCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCcee----e--EEEEeCCeEeeeccc
Q psy7040         589 ATNS--QGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----E--SQYLMNDKRVTIDNV  660 (716)
Q Consensus       589 a~n~--~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~--~~W~~~~~~~~~~~~  660 (716)
                      |.|.  .|.......+.|..          +.+..+.              |.|.+.|    .  +.|+++|..+..+  
T Consensus       274 a~n~~~~g~~~~~~~l~V~~----------v~g~~~~--------------l~C~~~g~p~p~~~i~W~~~~~~~~~~--  327 (363)
T 1wio_A          274 LALEAKTGKLHQEVNLVVMR----------ATQLQKN--------------LTCEVWGPTSPKLMLSLKLENKEAKVS--  327 (363)
T ss_dssp             ECBTTTTCCEEEEEEEEEEE----------ECCCSSS--------------EEEEEESSCCTTCCEEEECSSSSCSEE--
T ss_pred             EEEhhhcCeEEEEEeEEEEE----------ecCCCee--------------EEEEEccccCCCccEEEEeCCCceeee--
Confidence            9999  77554444444431          1122333              5566555    4  9999999887654  


Q ss_pred             ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         661 DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       661 ~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                         ..|.|.++...|+|.|+|.|.| .|....+..|.|.
T Consensus       328 ---~~l~i~~v~~~d~G~Y~C~a~~-~~~~~~~~~~~V~  362 (363)
T 1wio_A          328 ---KREKAVWVLNPEAGMWQCLLSD-SGQVLLESNIKVL  362 (363)
T ss_dssp             ---ESSSEEEESSCCSEEEEEEECS-SSSCCEEEEEEEC
T ss_pred             ---eeeeeeeeccccceeEEEEEec-CCeEEEecceEec
Confidence               6788999999999999999997 5667777777764

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.67  E-value=5.4e-16  Score=156.11  Aligned_cols=248  Identities=15%  Similarity=0.106  Sum_probs=159.8

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEec--------------cCCcEEEEe---CCCeEEEEECCCCCCCceeE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII--------------SKDRFKIVN---DDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~--------------~~~~~~~~~---~~~~~~l~i~~l~~~~~~~y  497 (716)
                      .+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.              ...++.+..   ......|.|.++...|.|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            3678899999999999999999999999985321              012222221   23456799999999999999


Q ss_pred             EEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCC
Q psy7040         498 TLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPL  577 (716)
Q Consensus       498 ~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L  577 (716)
                      +|.|.|..+    ...+.+..+.+.-......+..    ..+.......+.+.+.|++.+.....     ....+.|.++
T Consensus        83 ~C~~~n~~~----~~~l~V~~~~~~~~~~v~~G~~----v~l~C~~~~~p~~~v~W~~~~~~~~~-----~~~~L~i~~v  149 (363)
T 1wio_A           83 ICEVEDQKE----EVQLLVFGLTANSDTHLLQGQS----LTLTLESPPGSSPSVQCRSPRGKNIQ-----GGKTLSVSQL  149 (363)
T ss_dssp             EEEETTEEE----EEEEEEEEEEESSCSSEESBSC----EEEEEECCTTCCCCEEEECSSSCEEE-----ESSEEEECSB
T ss_pred             EEEEEECCC----cEEEEEEeCCCCCceEEecCCC----EEEEEEcCCCCCCeEEEEcCCCcccc-----cceEEEEeeC
Confidence            999998743    4455555433211101111222    23333333344556999988654321     2478999999


Q ss_pred             CCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeee
Q psy7040         578 QRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTI  657 (716)
Q Consensus       578 ~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~  657 (716)
                      ...+.+.|+|.|.|..+.......+.|..+|..+..+....+..+.|.+.+.+..-     ...-...+.|+++|..+..
T Consensus       150 ~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~-----~~~P~p~i~W~~~g~~~~~  224 (363)
T 1wio_A          150 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVE-----KLTGSGELWWQAERASSSK  224 (363)
T ss_dssp             CGGGCEECEEEEEETTEEEEECCEECEECCSCSEEEEEEETBCCEEEECCCCCCCC-----SSCEEEEEEEEESSCCCCC
T ss_pred             ChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCCCceEEecCCEEEEEEEEecccc-----cCCCceeEEEecCCCCccc
Confidence            99999999999999766544444454555555443122223445554432211000     0000127899999977654


Q ss_pred             c-------c-----------------cceeeEEEEccCCCCCcEEEEEEEEcC--CCCceeeEEEEEec
Q psy7040         658 D-------N-----------------VDYFTKITIRPLQRSDTAQYTVTATNS--QGKDQVFIEVVVTD  700 (716)
Q Consensus       658 ~-------~-----------------~~~~~~~~i~~l~~~~~y~y~~~a~n~--~G~~~~s~~l~v~~  700 (716)
                      .       .                 ......|.|.++...|+|.|+|.|.|.  .|.......|.|..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~  293 (363)
T 1wio_A          225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR  293 (363)
T ss_dssp             CEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE
T ss_pred             eEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE
Confidence            1       0                 111348999999999999999999999  99888888888764

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.66  E-value=2.6e-15  Score=143.53  Aligned_cols=230  Identities=15%  Similarity=0.122  Sum_probs=154.4

Q ss_pred             cEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  513 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~  513 (716)
                      .+.+.+|+.+.|.|.+.+.|.+ .+.|++++..+...          ...|.|.++...|.|.|+|.|.|..+.......
T Consensus        10 ~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~----------~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~   79 (262)
T 3rjd_A           10 WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS----------TPSYRITSASVNDSGEYRCQRGLSGRSDPIQLE   79 (262)
T ss_dssp             CSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEESSSCCCCCEEEE
T ss_pred             cEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc----------CCeEEEecCCcccCeEEEEEEecCCccccEEEE
Confidence            4578899999999999999888 99999999887432          447899999999999999999987765543333


Q ss_pred             EEEEEEEEEEeCCC-CCCCCceeeEEEEEEe-cCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEc
Q psy7040         514 VTVLGCSLKWNPPE-DDGGAPIEYYMVEKME-TDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN  591 (716)
Q Consensus       514 ~~v~~v~l~W~~p~-~~~~~~i~~y~v~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n  591 (716)
                      +....+.+.-.... ..+..    ..+.... ...+.+.+.|++.+......   .....+.|.++...+.+.|+|.|.|
T Consensus        80 v~~~~~~~~~~~~~~~~g~~----v~l~C~~~~~~p~~~v~W~~~g~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~n  152 (262)
T 3rjd_A           80 IHRGWLLLQVSSRVFTEGEP----LALRCHAWKDKLVYNVLYYRNGKAFKFF---HWNSNLTILKTNISHNGTYHCSGMG  152 (262)
T ss_dssp             EECSSEEEEESCSEEETTSC----EEEEEEEGGGCCCEEEEEEETTEEEEEE---EECCCEEESSCCGGGCEEEEEEEES
T ss_pred             EeccceEecCCCeEEecCCe----EEEEEEccCCCCCceEEEEECCcccccc---CCCCeEEEEECChhhCEEEEEEEeC
Confidence            32212222211111 11222    2233333 23345569999887655422   1236799999999999999999999


Q ss_pred             CCCCCccceeeeccCCCCCCccce------eeccceeEEEEEEeeEEEEeeeeccCcee---------eEEEEeCCeEee
Q psy7040         592 SQGKDQVFIEVVVTDKPSAPEGPI------QWLLTLTDVTWEISNYLQELHSSLMPISL---------ESQYLMNDKRVT  656 (716)
Q Consensus       592 ~~G~~~~s~~~~v~~~p~~~~~~~------~~~~~~v~l~w~i~~y~v~~~~~~~~~~~---------~~~W~~~~~~~~  656 (716)
                      ..|.......+.|..++..|. +.      ...+..+.              |.|.+.+         .+.|++++..+.
T Consensus       153 ~~~~~~~~~~l~V~~~~~~p~-~~~~~~~~~~~g~~~~--------------l~C~~~~~p~~p~~~~~~~w~~~~~~~~  217 (262)
T 3rjd_A          153 KHRYTSAGISVTVKELFPAPV-LNASVTSPLLEGNLVT--------------LSCETKLLLQRPGLQLYFSFYMGSKTLR  217 (262)
T ss_dssp             SSEEEEECEEEEEECSSCCCE-EEESSCSSEETTCCEE--------------EEEECCCCCC-----EEEEEEETTEEEE
T ss_pred             CCCccccceEEEeccCCCCCe-EeecCceeecCCCeEE--------------EEeEcccCCCCCCccEEEEEEeCCcEec
Confidence            886555545555554333332 21      12234444              4444433         478999999887


Q ss_pred             ecccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEE
Q psy7040         657 IDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVV  698 (716)
Q Consensus       657 ~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v  698 (716)
                      ..  .....|.|.++..+|.|.|+|.|.|..|.. ..+..+.|
T Consensus       218 ~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l  258 (262)
T 3rjd_A          218 GR--NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELEL  258 (262)
T ss_dssp             EE--ESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEE
T ss_pred             cc--CCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEE
Confidence            54  234689999999999999999999999976 33333433

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.65  E-value=3.8e-15  Score=156.64  Aligned_cols=95  Identities=32%  Similarity=0.594  Sum_probs=85.9

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      ++.||+.+.+.+++.++++|+|.+|..++|++|.+|.|+++..++..|..+.....+.+++.||.+|..|.|||+|.|..
T Consensus         9 ~P~pP~~P~v~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~~W~~v~~~~~t~~~V~~L~~g~~Y~FRV~A~N~~   88 (573)
T 3uto_A            9 EPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTIEGLRAGKQYEFRIIAENKH   88 (573)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCTTCEEEEEEEEEETT
T ss_pred             CCccCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeccccCCEEEeCCCCCCCcEeEEEEEEcCc
Confidence            34455557899999999999999999899999999999999999999999988888999999999999999999999999


Q ss_pred             ccCCCccccceEEec
Q psy7040         134 GESEPLETFSSIIAR  148 (716)
Q Consensus       134 g~~~~s~~~~~~~~~  148 (716)
                      |.|.+|.....+...
T Consensus        89 G~s~PS~~s~~v~~~  103 (573)
T 3uto_A           89 GQSKPCEPTAPVLIP  103 (573)
T ss_dssp             EECCCCCCCCCEECC
T ss_pred             eEcCCcCCCCCEEcC
Confidence            999999887776653

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.65  E-value=1.5e-15  Score=152.12  Aligned_cols=253  Identities=14%  Similarity=0.093  Sum_probs=140.4

Q ss_pred             cccEEEecCCeEEEEEEEeccCC-----------CeEEEEeCCeE------ec-cCCcEEEEeCCCeEEEEECCCCCCCc
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPI-----------PTKEWLCNDIT------II-SKDRFKIVNDDKSTKLKVFDSKRGDS  494 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~-----------~~~~W~~~~~~------~~-~~~~~~~~~~~~~~~l~i~~l~~~~~  494 (716)
                      ...+.+.+|+.+.|.|.+.+.|.           +.+.|++++..      +. .....++...  ...|.|.++...|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~D~   91 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE--KDVLWFRPTLLNDT   91 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE--TTEEEESSCCGGGC
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec--CCEEEEccCChhhC
Confidence            45678999999999999987654           89999998732      11 0011112222  23799999999999


Q ss_pred             eeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCC----------ceeeEEEEEEe-----cCCCceeeeEEEccce
Q psy7040         495 GIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGA----------PIEYYMVEKME-----TDTGKVLIKWIRTNDK  559 (716)
Q Consensus       495 ~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~----------~i~~y~v~~~~-----~~~~~~~~~w~~~~~~  559 (716)
                      |.|+|.|.|..|....+..+.+..      ++......          .-..-.+....     .+.+.+.+.|++.+..
T Consensus        92 G~Y~C~a~n~~~~~~~~~~l~V~~------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~  165 (349)
T 4dep_C           92 GNYTCMLRNTTYCSKVAFPLEVVQ------KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYK  165 (349)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEC------CCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEE
T ss_pred             EEEEEEEecCCceEEEEEEEEEec------CCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEE
Confidence            999999999988877777666651      11100000          00112333321     2245667999998765


Q ss_pred             eeeec-cccceeEEEEcCCCCCCeEEEEEEEEcCC-CCC---ccceeeeccCCCC---CCccceeecccee-EEEEEEee
Q psy7040         560 RVTID-NVDYFTKITIRPLQRSDTAQYTVTATNSQ-GKD---QVFIEVVVTDKPS---APEGPIQWLLTLT-DVTWEISN  630 (716)
Q Consensus       560 ~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~n~~-G~~---~~s~~~~v~~~p~---~~~~~~~~~~~~v-~l~w~i~~  630 (716)
                      ..... .......+.|.++...+.+.|+|.|.|.. |..   .....+.|..++.   .|. +.......+ .+.   .|
T Consensus       166 l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~-i~~~~~~~~~~v~---~G  241 (349)
T 4dep_C          166 IQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPV-IHSPNDHVVYEKE---PG  241 (349)
T ss_dssp             CCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCE-EC----------------
T ss_pred             CCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCe-EecCCCceeEEEe---cC
Confidence            53211 11123579999999999999999999987 433   2333333443322   233 222221110 111   12


Q ss_pred             EEEEeeeeccCce----e----eEEEEeCCeEeeec----------------ccceeeEEEEccCCCCCc-EEEEEEEEc
Q psy7040         631 YLQELHSSLMPIS----L----ESQYLMNDKRVTID----------------NVDYFTKITIRPLQRSDT-AQYTVTATN  685 (716)
Q Consensus       631 y~v~~~~~~~~~~----~----~~~W~~~~~~~~~~----------------~~~~~~~~~i~~l~~~~~-y~y~~~a~n  685 (716)
                      -.+   .|.|.+.    |    .+.|+++|..+...                .......|.|.++...|. |.|+|.|.|
T Consensus       242 ~~v---~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N  318 (349)
T 4dep_C          242 EEL---LIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARS  318 (349)
T ss_dssp             ------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEEC
T ss_pred             CcE---EEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEc
Confidence            222   3777777    3    89999999887661                011124599999999999 999999999


Q ss_pred             CCCCceeeEEEEEec
Q psy7040         686 SQGKDQVFIEVVVTD  700 (716)
Q Consensus       686 ~~G~~~~s~~l~v~~  700 (716)
                      ..|....++.|.|..
T Consensus       319 ~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          319 AKGEVAKAAKVKQKV  333 (349)
T ss_dssp             SSCEEEEECC-----
T ss_pred             CCCcEEEEEEEeeec
Confidence            999999888888854

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.64  E-value=3.2e-14  Score=137.79  Aligned_cols=231  Identities=19%  Similarity=0.238  Sum_probs=160.3

Q ss_pred             CceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCC-eEEeEEeCCeEEEEEECCCCCC
Q psy7040         173 GMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP-LKVSNVHAEGVTLDWKVPDDDG  251 (716)
Q Consensus       173 ~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~-~~~~~~~~~~~~l~W~~p~~~~  251 (716)
                      ..++.+........|.|.+++..|+|.|+|.|.|..|..+..+.|.|..+|.....+ -......+..+.|.|.....  
T Consensus        49 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~--  126 (284)
T 2rik_A           49 GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGS--  126 (284)
T ss_dssp             SSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESS--
T ss_pred             CCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeee--
Confidence            344555555667899999999999999999999999998889999998877432211 12334567889999986322  


Q ss_pred             CCccceEEEEEEe--CCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCC
Q psy7040         252 GQPIEKYVVDKMD--EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPG  329 (716)
Q Consensus       252 ~~~~~~y~v~~~~--~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~  329 (716)
                        +...+.+....  ........... ......+.|.++...+.+.|+|.|.|..|....                    
T Consensus       127 --p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--------------------  183 (284)
T 2rik_A          127 --PEIKVLWYKDETEIQESSKFRMSF-VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS--------------------  183 (284)
T ss_dssp             --SCCEEEEEETTEECCCSSSEEEEE-ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE--------------------
T ss_pred             --CCCEEEEEECCEECcCCCcEEEEE-cCCEEEEEECCCCcccCEEEEEEEEcCCCceeE--------------------
Confidence              22233332211  01111111110 123467889999999999999999886542100                    


Q ss_pred             CcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCC
Q psy7040         330 TPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  409 (716)
Q Consensus       330 ~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~  409 (716)
                                .+.|.-..                                                              
T Consensus       184 ----------~~~l~V~~--------------------------------------------------------------  191 (284)
T 2rik_A          184 ----------STSLKVKE--------------------------------------------------------------  191 (284)
T ss_dssp             ----------EEEEEEEC--------------------------------------------------------------
T ss_pred             ----------EEEEEEec--------------------------------------------------------------
Confidence                      00000000                                                              


Q ss_pred             CCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCC
Q psy7040         410 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS  489 (716)
Q Consensus       410 ~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l  489 (716)
                                     +|.+. ..+....+..|..+.|.|.+.+.|.+.+.|++++..+....++.+...+....|.|.++
T Consensus       192 ---------------~p~~~-~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  255 (284)
T 2rik_A          192 ---------------PPVFR-KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV  255 (284)
T ss_dssp             ---------------CCBCC-SCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSC
T ss_pred             ---------------CCcce-eCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCC
Confidence                           00000 00123456778889999999999999999999999998888888888887889999999


Q ss_pred             CCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         490 KRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       490 ~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      ...|.|.|+|.|.|..|....+..+.+
T Consensus       256 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V  282 (284)
T 2rik_A          256 DSADIGEYQCKASNDVGSYTCVGSITL  282 (284)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CcccCEEEEEEEEeCCCceeEEEEEEE
Confidence            999999999999999999888887765

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.64  E-value=7e-15  Score=135.40  Aligned_cols=190  Identities=13%  Similarity=0.122  Sum_probs=129.9

Q ss_pred             CCCCCCceEE--EE-eCCeEEEEecCCCCCCCCccceEEEEEEcCCC------CcEEEeccc---CCCeEEecCCCCCcE
Q psy7040          55 LDPEGPLEVS--NI-HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET------GVWIPVGKT---REPEMDVTGLTPGHE  122 (716)
Q Consensus        55 ~~p~~~l~~~--~~-~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~------~~~~~~~~~---~~~~~~i~~L~~~~~  122 (716)
                      .+|..|..+.  .. ..+++.++|+++.. ++. ...|.|+|+....      ..+..+...   ....+.+.+|.+++.
T Consensus         3 ~pP~~P~~l~c~~~~~~~~~~~~W~p~~~-~~~-~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~   80 (215)
T 1cd9_B            3 YPPASPSNLSCLMHLTTNSLVCQWEPGPE-THL-PTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQY   80 (215)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSC-CSS-CCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSC
T ss_pred             CCCCCCeeeeeecCCCcccEEEEecCCCC-CCC-ceeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccceE
Confidence            3455554444  44 46799999998864 444 4679999986542      234444321   125677889999999


Q ss_pred             EEEEEEEEecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEE
Q psy7040         123 YKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTV  202 (716)
Q Consensus       123 y~~~v~a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c  202 (716)
                      |.|+|.|.|..|.+.+... . +...+                                                     
T Consensus        81 Y~~~V~A~N~~G~~~s~~~-~-~~~~~-----------------------------------------------------  105 (215)
T 1cd9_B           81 MAIWVQAENMLGSSESPKL-C-LDPMD-----------------------------------------------------  105 (215)
T ss_dssp             EEEEEEEEETTEEEECCCE-E-ECGGG-----------------------------------------------------
T ss_pred             EEEEEEEECCCCCccCccE-E-EchHH-----------------------------------------------------
Confidence            9999999999886532111 0 00000                                                     


Q ss_pred             EEEeCCCCceeEEEEEEecCCCCCCCCeEEeEE------eCCeEEEEEECCCCCCCCccceEEEEEE-eCCCCCeEEccc
Q psy7040         203 TAENINGKDSVEVEVIVLDKPSPPGGPLKVSNV------HAEGVTLDWKVPDDDGGQPIEKYVVDKM-DEATGRWTPAGE  275 (716)
Q Consensus       203 ~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~------~~~~~~l~W~~p~~~~~~~~~~y~v~~~-~~~~~~~~~~~~  275 (716)
                                       ..+|.+|.+ +.+...      ..+++.|+|++|.. ++..+..|.|+++ ..+...|.....
T Consensus       106 -----------------~v~p~pP~~-~~~~~~~~~~~~~~~~~~l~W~~p~~-~~~~~l~Y~v~y~~~~~~~~w~~~~~  166 (215)
T 1cd9_B          106 -----------------VVKLEPPML-QALDIGPDVVSHQPGCLWLSWKPWKP-SEYMEQECELRYQPQLKGANWTLVFH  166 (215)
T ss_dssp             -----------------GBCCCCCEE-EECCC-------CCSCEEEEEECCGG-GTTSCEEEEEEEEESSTTCCCEEEEE
T ss_pred             -----------------ceEeCCCcE-EEEEEeccccCCCCCeEEEEEeCCCC-CCeEEEEEEEEEccCCCCCCcEEEec
Confidence                             025777776 666654      57789999998865 3434479999998 667777876533


Q ss_pred             cCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecC
Q psy7040         276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKN  320 (716)
Q Consensus       276 ~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~  320 (716)
                      .......+.|.+|.|++.|.|+|+|.+..|.+.++..+..+.+.+
T Consensus       167 ~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T  211 (215)
T 1cd9_B          167 LPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRP  211 (215)
T ss_dssp             EESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECC
T ss_pred             ccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceec
Confidence            334567899999999999999999999888776666665565554

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.64  E-value=1.4e-15  Score=147.72  Aligned_cols=243  Identities=16%  Similarity=0.095  Sum_probs=150.6

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +|.+. .....+.+.+|+.+.|.|.+.+    .+.|++++..+     ......  ...|.|.++...|.|.|+|.|.| 
T Consensus        12 ~P~i~-~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~-----~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~n-   78 (290)
T 2o26_X           12 PPSIH-PAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN-----EMVENK--KNEWIQEKAEATRTGTYTCSNSN-   78 (290)
T ss_dssp             CCEES-SCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS-----CEEEEC--SSEEEETTCCGGGCEEEEEEESS-
T ss_pred             CCEEe-CCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce-----eeecCC--CceEEEeccCHHhCeEEEEEeeC-
Confidence            56555 3456788999999999999887    89999998765     111122  26899999999999999999999 


Q ss_pred             CCceeeEEEEEEEEEEEEEeCCC----CCCCCceeeEEEEEEecCCCc-eeeeEEE-ccceeeeec--cccceeEEEEcC
Q psy7040         505 WGTDKGTAKVTVLGCSLKWNPPE----DDGGAPIEYYMVEKMETDTGK-VLIKWIR-TNDKRVTID--NVDYFTKITIRP  576 (716)
Q Consensus       505 ~g~~~~s~~~~v~~v~l~W~~p~----~~~~~~i~~y~v~~~~~~~~~-~~~~w~~-~~~~~~~~~--~~~~~~~~~i~~  576 (716)
                       |. ..++.+.+.........+.    ..+..    ..+..... .+. +.+.|+. .+.......  .......+.|.+
T Consensus        79 -g~-~~~~~l~V~~~~~~~~~~~~~~~~~g~~----v~l~C~~~-~p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~  151 (290)
T 2o26_X           79 -GL-TSSIYVFVRDPAKLFLVGLPLFGKEDSD----ALVRCPLT-DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKN  151 (290)
T ss_dssp             -SC-EEEEEEEEECSSCCBCCCCCEEEETTSC----EEECCCBS-CCSCEEEEEEETTSCCCCTTCEEEEETTTEEEEES
T ss_pred             -Cc-cEEEEEEEeCCCcccccccceEEecCCe----EEEeCcCC-CCCCceEEEEeCCCcCCCCCCceeeCCCCCEEEec
Confidence             54 4445554440000000000    00111    12222222 244 6689954 443321110  111225789999


Q ss_pred             CCCCCeE-EEEEEEEcCCCCCcc-ceeeeccCCC-CCCccce-------eeccceeEEEEEEeeEEEEeeeeccCcee--
Q psy7040         577 LQRSDTA-QYTVTATNSQGKDQV-FIEVVVTDKP-SAPEGPI-------QWLLTLTDVTWEISNYLQELHSSLMPISL--  644 (716)
Q Consensus       577 L~~~~~y-~~~v~a~n~~G~~~~-s~~~~v~~~p-~~~~~~~-------~~~~~~v~l~w~i~~y~v~~~~~~~~~~~--  644 (716)
                      +...+.+ .|+|.|.|..|.... ...+.|...+ ..|. +.       ...+..+.              |.|.+.|  
T Consensus       152 v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~-i~~~~~~~~v~~G~~v~--------------l~C~~~g~p  216 (290)
T 2o26_X          152 VKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPV-VSVPETSHLLKKGDTFT--------------VVCTIKDVS  216 (290)
T ss_dssp             CCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCE-EECSCSBCCCCTTCCEE--------------EEEEEEESS
T ss_pred             ccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCc-cccCCCcceEecCCcEE--------------EEEEEecCC
Confidence            9999999 999999998554221 2333343211 2222 21       11133333              6666666  


Q ss_pred             ---eEEEEeCCeEe----eec---------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         645 ---ESQYLMNDKRV----TID---------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       645 ---~~~W~~~~~~~----~~~---------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                         .+.|++++..+    ...         .......|.|.++...|+|.|+|.|.|..|....+..|.|..+|
T Consensus       217 ~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          217 TSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             TTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             cceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence               39999998773    111         12234789999999999999999999999999999999988765

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.64  E-value=5.7e-15  Score=146.16  Aligned_cols=242  Identities=11%  Similarity=0.003  Sum_probs=156.5

Q ss_pred             ccEEEecCCeEEEEEEEecc---------CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCce-eEEEEEEc
Q psy7040         434 SDIKVRAGSNFEFDINVIGE---------PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG-IYTLAVKN  503 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~---------p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~-~y~~~a~n  503 (716)
                      ..+.+.+|+.+.|.|.+.+.         |.+.+.|++++..+....+. ..    ...|.|.++...|.| .|+|.|.|
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~~----~~~L~i~~v~~~D~Gs~Y~C~a~n  111 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-VK----NGDLWIANYTSNDSHRRYLCTVTT  111 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-EE----TTEEEESSCCGGGGGCCEEEEEEC
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-ee----cceEEEcCCChHhCCCcEEEEEEe
Confidence            45678999999999999884         55789999998766543322 11    348999999999999 99999999


Q ss_pred             CCCceeeEEEEEEE-----EEEEEEeCCCCCCCCceeeEEEEEEecCCC-ceeeeEEEccceeeeec--cccceeEEEEc
Q psy7040         504 SWGTDKGTAKVTVL-----GCSLKWNPPEDDGGAPIEYYMVEKMETDTG-KVLIKWIRTNDKRVTID--NVDYFTKITIR  575 (716)
Q Consensus       504 ~~g~~~~s~~~~v~-----~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~-~~~~~w~~~~~~~~~~~--~~~~~~~~~i~  575 (716)
                      ..|.........+.     .+.-.-......+..    ..+.....+.+ .+.+.|++.+.......  .......+.|.
T Consensus       112 ~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~----v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~  187 (329)
T 3oq3_B          112 KNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYG----IDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIH  187 (329)
T ss_dssp             TTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTC----EEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEEC
T ss_pred             CCCceeeEEEEEEEcCCCcEeccccceEEeCCCc----EEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEe
Confidence            99875444322222     000000011111122    23333333334 56699999876542110  11113789999


Q ss_pred             CCCCCCeEEEEEEEEcC--CCCCccc----eeeeccCCCCC------CccceeeccceeEEEEEEeeEEEEeeeeccCce
Q psy7040         576 PLQRSDTAQYTVTATNS--QGKDQVF----IEVVVTDKPSA------PEGPIQWLLTLTDVTWEISNYLQELHSSLMPIS  643 (716)
Q Consensus       576 ~L~~~~~y~~~v~a~n~--~G~~~~s----~~~~v~~~p~~------~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~  643 (716)
                      ++...+.+.|+|.|.|.  .|.....    ..+.|..+|..      |.......+..+.|              .|.+.
T Consensus       188 ~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l--------------~C~~~  253 (329)
T 3oq3_B          188 NPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANI--------------TCTAV  253 (329)
T ss_dssp             SCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEE--------------EEEEE
T ss_pred             ecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEE--------------EEEEE
Confidence            99999999999999997  6544433    22335444422      11011222444544              44444


Q ss_pred             e--------eEEEEeCCeEeeeccc-----------ceeeEEEEccCCCCCcE-EEEEEEEcCCCCceeeEEEEE
Q psy7040         644 L--------ESQYLMNDKRVTIDNV-----------DYFTKITIRPLQRSDTA-QYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       644 ~--------~~~W~~~~~~~~~~~~-----------~~~~~~~i~~l~~~~~y-~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |        .+.|+++|..+.....           .....|.|.++...|.| .|+|.|.|..|....+..|.|
T Consensus       254 g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          254 STSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             ETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             ECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            3        5699999887533211           13478999999999999 999999999999988888776

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.63  E-value=5.1e-15  Score=147.02  Aligned_cols=261  Identities=10%  Similarity=0.119  Sum_probs=161.4

Q ss_pred             cccccEEEecCCeEEEEEEEecc----CCCeEEEEeCC--eE-------------e--ccCCcEEEE-eCCCeEEEEECC
Q psy7040         431 DQLSDIKVRAGSNFEFDINVIGE----PIPTKEWLCND--IT-------------I--ISKDRFKIV-NDDKSTKLKVFD  488 (716)
Q Consensus       431 ~~~~~~~~~~g~~~~~~~~v~~~----p~~~~~W~~~~--~~-------------~--~~~~~~~~~-~~~~~~~l~i~~  488 (716)
                      ..+..+.+..|+.+.|.|.+.+.    +.+.+.|++++  ..             .  ....++.+. .......|.|.+
T Consensus        19 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   98 (331)
T 3u83_A           19 QVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSR   98 (331)
T ss_dssp             --CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECS
T ss_pred             EcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcc
Confidence            44556889999999999999876    55579999954  11             1  112333332 122456799999


Q ss_pred             CCCCCceeEEEE-EEcCCCceeeEEEEEEE---EEEEEEeCCC--CCCCCceeeEEEEEE-ecCCCceeeeEEEccceee
Q psy7040         489 SKRGDSGIYTLA-VKNSWGTDKGTAKVTVL---GCSLKWNPPE--DDGGAPIEYYMVEKM-ETDTGKVLIKWIRTNDKRV  561 (716)
Q Consensus       489 l~~~~~~~y~~~-a~n~~g~~~~s~~~~v~---~v~l~W~~p~--~~~~~~i~~y~v~~~-~~~~~~~~~~w~~~~~~~~  561 (716)
                      +...|.|.|+|. +.|..|.......+.+.   .+.+.-..+.  ...|.......+... ....+.+.+.|++......
T Consensus        99 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~  178 (331)
T 3u83_A           99 LELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA  178 (331)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEE
T ss_pred             cCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcc
Confidence            999999999998 56667777777777766   2222222211  001100011233332 2223445599998533221


Q ss_pred             ee--cc-cc----ceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCC----ccceeeccceeEEEEEEee
Q psy7040         562 TI--DN-VD----YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP----EGPIQWLLTLTDVTWEISN  630 (716)
Q Consensus       562 ~~--~~-~~----~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~----~~~~~~~~~~v~l~w~i~~  630 (716)
                      ..  .. ..    ....+.|..+...+.+.|+|.|.|..|....+..+.|..+|...    .......+..+.       
T Consensus       179 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~-------  251 (331)
T 3u83_A          179 EYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK-------  251 (331)
T ss_dssp             EEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEE-------
T ss_pred             ccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEE-------
Confidence            11  10 01    12457777888999999999999998865555545454444211    000111233444       


Q ss_pred             EEEEeeeeccCcee----e-EEEEeCCeEeeecccceeeEEEEc-cCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCC
Q psy7040         631 YLQELHSSLMPISL----E-SQYLMNDKRVTIDNVDYFTKITIR-PLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA  704 (716)
Q Consensus       631 y~v~~~~~~~~~~~----~-~~W~~~~~~~~~~~~~~~~~~~i~-~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~  704 (716)
                             |.|.+.|    . +.|++++..+..........|.|. ++...|.|.|+|.|.|..|....++.|.|...+..
T Consensus       252 -------l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  324 (331)
T 3u83_A          252 -------LTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAAL  324 (331)
T ss_dssp             -------EEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC----
T ss_pred             -------EEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccchh
Confidence                   5555555    4 999999987765433344689999 89999999999999999999999999999887665


Q ss_pred             C
Q psy7040         705 P  705 (716)
Q Consensus       705 p  705 (716)
                      .
T Consensus       325 ~  325 (331)
T 3u83_A          325 E  325 (331)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.63  E-value=1.2e-14  Score=133.06  Aligned_cols=178  Identities=20%  Similarity=0.209  Sum_probs=126.3

Q ss_pred             CCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEeccc---CCCeEEe--cCCCCCcEEEEEEEEEec
Q psy7040          58 EGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT---REPEMDV--TGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        58 ~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~---~~~~~~i--~~L~~~~~y~~~v~a~~~  132 (716)
                      |.+|+......+++.++|+++.. ++. ...|.|+|+..+...|..|...   ....+.+  .+|.+.+.|.|+|+|.|.
T Consensus         7 P~nl~c~~~~~~~~~c~W~p~~~-~~~-~~~Y~l~y~~~~~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~V~A~N~   84 (210)
T 3n06_B            7 PEIFKCRSPNKETFTCWWRPGTD-GGL-PTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVNATNQ   84 (210)
T ss_dssp             CEEEEEEBSSSSCEEEEEECCSS-SCC-CSEEEEEEEETTCCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEEEEEEET
T ss_pred             CeEeEEEeCCCCeEEEEECCCCC-CCC-CceEEEEEEECCCCccccCCCCCCCCCeEEEeCCCCcccceeEEEEEEEEcC
Confidence            33455556677899999998773 334 4789999998777778887531   1234544  579999999999999999


Q ss_pred             CccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCce
Q psy7040         133 EGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDS  212 (716)
Q Consensus       133 ~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  212 (716)
                      .|.+.+....  +....                                                               
T Consensus        85 ~G~~~s~~~~--~~~~~---------------------------------------------------------------   99 (210)
T 3n06_B           85 MGSSFSDELY--VDVTY---------------------------------------------------------------   99 (210)
T ss_dssp             TEEEECCCEE--ECGGG---------------------------------------------------------------
T ss_pred             CCCeeCCcEE--Echhh---------------------------------------------------------------
Confidence            9876422111  10000                                                               


Q ss_pred             eEEEEEEecCCCCCCCCeEEeEEe----CCeEEEEEECCCCCC---CCccceEEEEEEeCCCCCeEEccccCcccceEEE
Q psy7040         213 VEVEVIVLDKPSPPGGPLKVSNVH----AEGVTLDWKVPDDDG---GQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEV  285 (716)
Q Consensus       213 ~~~~~~v~~~p~~p~~~~~~~~~~----~~~~~l~W~~p~~~~---~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i  285 (716)
                             ..+|.+|.+ +.+....    .+++.|+|.+|....   |..+..|.|+++..+...|.....  .....+.|
T Consensus       100 -------~v~p~pP~~-l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~~~~~~~~~--~~~~~~~l  169 (210)
T 3n06_B          100 -------IVQPDPPLE-LAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA--GQQTEFKI  169 (210)
T ss_dssp             -------CBCCCCCEE-EEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTCSSCEEEEE--ETCSEEEE
T ss_pred             -------eEecCCCce-EEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCCCCCEEEec--cCceEEEE
Confidence                   025777776 6766553    478999999876543   334689999999877777865432  34679999


Q ss_pred             cCCCCCCeEEEEEEEEcCCCC-CCCCcc
Q psy7040         286 EGLIPNHKYKFRVRAVNKQGK-SEPLTT  312 (716)
Q Consensus       286 ~~L~p~~~y~~~v~a~n~~g~-~~~~~~  312 (716)
                      .+|.|++.|.|+|+|.+..|. |+++..
T Consensus       170 ~~L~p~t~Y~v~Vra~~~~g~wS~wS~~  197 (210)
T 3n06_B          170 LSLHPGQKYLVQVRCKPDHGYWSAWSPA  197 (210)
T ss_dssp             CCCCTTCEEEEEEEEEESSSCCCCCCCC
T ss_pred             eccCCCCEEEEEEEEecCCCcccCCCCc
Confidence            999999999999999998775 444444

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.62  E-value=1.2e-14  Score=133.99  Aligned_cols=138  Identities=25%  Similarity=0.322  Sum_probs=117.9

Q ss_pred             ceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCC
Q psy7040         174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQ  253 (716)
Q Consensus       174 ~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~  253 (716)
                      .++.+........|.|.++...|.|.|+|.|.|..|.....+.+.+..+|.+|.. +.+ .....++.|.|.+|..+++.
T Consensus        65 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~-~~~-~~~~~~~~l~w~~p~~~~~~  142 (215)
T 3mtr_A           65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSI-DQV-EPYSSTAQVQFDEPEATGGV  142 (215)
T ss_dssp             CSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEE-EEE-EEETTEEEEEEECCSCCCSS
T ss_pred             ccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcc-eEE-EEecceEEEEEecCCccCCC
Confidence            4666666667889999999999999999999999999999999999999999876 455 46788999999988877888


Q ss_pred             ccceEEEEEEeCCCCCeEEcccc---CcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCccc
Q psy7040         254 PIEKYVVDKMDEATGRWTPAGET---EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT  313 (716)
Q Consensus       254 ~~~~y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~  313 (716)
                      ++..|.|+++..+...|......   ......+.|.+|.+++.|.|+|.|.|..|.+.++...
T Consensus       143 pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~  205 (215)
T 3mtr_A          143 PILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS  205 (215)
T ss_dssp             CEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCE
T ss_pred             ceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccce
Confidence            99999999998888788765321   1223889999999999999999999999998887665

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.62  E-value=1e-13  Score=136.43  Aligned_cols=240  Identities=12%  Similarity=0.073  Sum_probs=155.0

Q ss_pred             EEEecCCeEEEEEEEeccC-CCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEP-IPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      +.+..|..+.|.|.+.+.+ .+.+.|.+++..+... .......  ...|.|.++...|.|.|+|.+   .|.....+.+
T Consensus        16 v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~---~g~~~~~~~L   89 (325)
T 1n26_A           16 LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH-PSRWAGM--GRRLLLRSVQLHDSGNYSCYR---AGRPAGTVHL   89 (325)
T ss_dssp             EEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC-CEEEEEE--SSEEEECSCCGGGCEEEEEES---SSSCSCEEEE
T ss_pred             EECCCCCcEEEEeCCCCCCCCceEEEEECCccCCcc-ccccccc--cceEEecccchhhCeEeEEEe---CCEEeeeEEE
Confidence            4457999999999988755 6899999987654211 1222222  347999999999999999993   5655555655


Q ss_pred             EEE-----------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeE-EEccceeeeeccccceeEEEEcC
Q psy7040         515 TVL-----------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKW-IRTNDKRVTIDNVDYFTKITIRP  576 (716)
Q Consensus       515 ~v~-----------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w-~~~~~~~~~~~~~~~~~~~~i~~  576 (716)
                      .+.                 .+.++|.++.+. + ....|.|.++...... ...| ......     .......+.|..
T Consensus        90 ~V~~pP~~P~l~c~~~~~~~~~~c~W~~~~~~-~-~~~~y~l~~~~~~~~~-~~~~~~~c~~~-----~~~~~~~c~i~~  161 (325)
T 1n26_A           90 LVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTP-S-LTTKAVLLVRKFQNSP-AEDFQEPCQYS-----QESQKFSCQLAV  161 (325)
T ss_dssp             EECCCCCCCCCEEEBSSTTSCEEEEECCSSCC-C-TTCEEEEEEEEESSSS-CEEEEEEEEEE-----TTTTEEEEEECC
T ss_pred             EeccCCCCCceeEEeecCCCcEEEEECCCCCC-C-CCceEEEEEEEccCCC-CCcccccCCCC-----CCCCCEEEEECC
Confidence            554                 789999987543 3 3578999887542100 0232 221100     011236788888


Q ss_pred             CC-CCCeEEEEEEEEcCCCCCccc-eeeec--cCCCCCCcc--ceeec--cceeEEEEE----------EeeEEEEeeee
Q psy7040         577 LQ-RSDTAQYTVTATNSQGKDQVF-IEVVV--TDKPSAPEG--PIQWL--LTLTDVTWE----------ISNYLQELHSS  638 (716)
Q Consensus       577 L~-~~~~y~~~v~a~n~~G~~~~s-~~~~v--~~~p~~~~~--~~~~~--~~~v~l~w~----------i~~y~v~~~~~  638 (716)
                      +. +++.|.|+|.|.|..|.+... ..+.+  ..+|.+|..  +..+.  .+++.|+|.          +.+|.|+|+..
T Consensus       162 ~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~  241 (325)
T 1n26_A          162 PEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAE  241 (325)
T ss_dssp             CTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEET
T ss_pred             CcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEEeC
Confidence            76 789999999999999976421 12221  223444432  34443  258999998          47888888763


Q ss_pred             ccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCce---eeEEEEEec
Q psy7040         639 LMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ---VFIEVVVTD  700 (716)
Q Consensus       639 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~---~s~~l~v~~  700 (716)
                      .     .-.|..    +..  ......+.|.+|.++..|.++|+|.|..|.+.   ++..+...+
T Consensus       242 ~-----~~~W~~----~~~--~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~  295 (325)
T 1n26_A          242 R-----SKTFTT----WMV--KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTP  295 (325)
T ss_dssp             T-----CSCCEE----EEC--GGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEECC
T ss_pred             C-----CCCCEE----Ecc--cCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccceec
Confidence            2     123432    111  12236889999999999999999999988764   344444433

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.61  E-value=1.5e-14  Score=138.22  Aligned_cols=233  Identities=14%  Similarity=0.061  Sum_probs=146.4

Q ss_pred             EEEecCCeEEEEEEEec-cCCC--eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCC---CCCCce--eEEEEEEcCCCc
Q psy7040         436 IKVRAGSNFEFDINVIG-EPIP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS---KRGDSG--IYTLAVKNSWGT  507 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~-~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l---~~~~~~--~y~~~a~n~~g~  507 (716)
                      ..+.+|+.+.|.|.+.+ .|.+  .+.|++++..+..    .+...+.  .+.+...   ...|.|  .|+|.|.|..|.
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~   86 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQS   86 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTEE
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCCcceEEEEEecCCCC
Confidence            36889999999999998 7776  9999999988754    2333332  4444443   566666  599999999998


Q ss_pred             eeeEEEEEEE---EEEEEEeCCC-CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeE
Q psy7040         508 DKGTAKVTVL---GCSLKWNPPE-DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTA  583 (716)
Q Consensus       508 ~~~s~~~~v~---~v~l~W~~p~-~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y  583 (716)
                      ...+..+.+.   ...+.-.... ..+......|.+.      +.+.+.|  .+....   .......+.+......+.+
T Consensus        87 ~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~------p~~~i~W--~g~~~~---~~~~~~~l~i~~~~~~~~g  155 (265)
T 2oz4_A           87 QETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH------PRAKVTL--NGVPAQ---PLGPRAQLLLKATPEDNGR  155 (265)
T ss_dssp             EEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC------TTSEEEE--SSCSSS---CCSSEECCEEECCGGGTTE
T ss_pred             cEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc------CCCEEEE--CCEEcc---CCCCcEEEEEccccccCCc
Confidence            8777777775   1122211111 1112212222222      4555899  443321   1122366778888899999


Q ss_pred             EEEEEEEcCC-CCCc---cceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEe
Q psy7040         584 QYTVTATNSQ-GKDQ---VFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRV  655 (716)
Q Consensus       584 ~~~v~a~n~~-G~~~---~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~  655 (716)
                      .|+|.|.|.. |...   ....+.|..+|.... ...  ...+.+.   .|-.+   .|.|.+.|    .+.|+++|..+
T Consensus       156 ~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~-~~~--p~~~~v~---~g~~~---~l~C~~~g~P~p~i~W~~~~~~~  226 (265)
T 2oz4_A          156 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDE-RDC--PGNWTWP---ENSQQ---TPMCQAWGNPLPELKCLKDGTFP  226 (265)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEEEEEEECCG-GGS--CSEEEEE---TTCEE---CCCCCCEEESCCEEEEEETTTEE
T ss_pred             eEEEEEEcCCCCCcccccccEEEEEEeCCcccc-ccC--CCccEEc---CCCeE---EEEeECccCCCCeEEEEECCccc
Confidence            9999998644 6544   333344555444321 110  0111111   12222   38888888    89999999843


Q ss_pred             eecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         656 TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       656 ~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      ...     ..+  ..+..+|+|.|+|.|.|..|....++.|.|..+
T Consensus       227 ~~~-----g~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~p  265 (265)
T 2oz4_A          227 LPI-----GES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  265 (265)
T ss_dssp             CCT-----TSC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCC-----CcE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEecC
Confidence            332     112  248889999999999999999999999998763

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.61  E-value=1.2e-14  Score=141.11  Aligned_cols=243  Identities=14%  Similarity=0.173  Sum_probs=150.4

Q ss_pred             ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      ....+.+.+|+.+.|.|.+.+    .+.|++++...     ...........|.|.++...|.|.|+|.|.|..|..+..
T Consensus        10 ~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~   80 (289)
T 3ejj_X           10 SGPELVVEPGETVTLRCVSNG----SVEWDGPISPY-----WTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT   80 (289)
T ss_dssp             CSSEEEECTTCCEEEEEECSS----CCEEECSCSSS-----SEECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEE
T ss_pred             CCceEEECCCCCEEEEEEeCC----cEEEccCCCce-----EEEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeE
Confidence            345678999999999999877    49999776432     223334456789999999999999999999998887777


Q ss_pred             EEEEEEEEEEEEeC-CC----CCCCCceeeEEEEEEecCCCce-eeeEEEccceeeeec---cccceeEEEEcCCCCCCe
Q psy7040         512 AKVTVLGCSLKWNP-PE----DDGGAPIEYYMVEKMETDTGKV-LIKWIRTNDKRVTID---NVDYFTKITIRPLQRSDT  582 (716)
Q Consensus       512 ~~~~v~~v~l~W~~-p~----~~~~~~i~~y~v~~~~~~~~~~-~~~w~~~~~~~~~~~---~~~~~~~~~i~~L~~~~~  582 (716)
                      ..+.+......+.. +.    ..+......|.+.    ..+.+ .+.|++.+.......   .......+.|.++...+.
T Consensus        81 ~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  156 (289)
T 3ejj_X           81 IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLIT----DPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDS  156 (289)
T ss_dssp             EEEEECCSSCSEEESCSEEEEETTSCEEECEEES----CGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGC
T ss_pred             EEEEEeCCCcceecccceEEEecCCceEeEEEcc----CCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccC
Confidence            76666510000000 00    1111212233322    22222 288987443221100   111235799999999999


Q ss_pred             EEEEEEEE-cCCCCCccceeeeccCC-CCCCccceee-------ccceeEEEEEEeeEEEEeeeeccCcee-----eEEE
Q psy7040         583 AQYTVTAT-NSQGKDQVFIEVVVTDK-PSAPEGPIQW-------LLTLTDVTWEISNYLQELHSSLMPISL-----ESQY  648 (716)
Q Consensus       583 y~~~v~a~-n~~G~~~~s~~~~v~~~-p~~~~~~~~~-------~~~~v~l~w~i~~y~v~~~~~~~~~~~-----~~~W  648 (716)
                      +.|+|.|. +..|.......+.|... +..|. +...       .+..+.              |.|.+.+     .+.|
T Consensus       157 G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~-i~~~~~~~~~~~g~~~~--------------l~C~~~~~~p~~~i~W  221 (289)
T 3ejj_X          157 NTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQ-IKLEPSKLVRIRGEAAQ--------------IVCSATNAEVGFNVIL  221 (289)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEESSCCCCCE-EEEESSSEECCSSSCEE--------------EEEEEEESSSCCEEEE
T ss_pred             EEEEEEEEeCCCccccccEEEEEEECCCCCCe-EEecCCceEEEeCCcEE--------------EEEEeCCCCCceEEEE
Confidence            99999999 44444334444445422 22333 2221       133333              5555554     8999


Q ss_pred             EeCCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         649 LMNDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       649 ~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                      ++++..+...        .......|.|.++...|.|.|+|.|.|..|....++.|.+...+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          222 KRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH  283 (289)
T ss_dssp             EETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred             EECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence            9999887553        11224789999999999999999999999999999988876654

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.60  E-value=2.7e-15  Score=139.04  Aligned_cols=156  Identities=19%  Similarity=0.173  Sum_probs=96.7

Q ss_pred             CCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCCccccceEEecCCCCccccccccc
Q psy7040          82 GGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLD  161 (716)
Q Consensus        82 ~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~  161 (716)
                      ++..|.+|.|++.......+........+++++.+|.|++.|.|||+|.|..|.+.++......+..+            
T Consensus        18 ~~~~Vt~Y~~~~~~~~~~~~~~~~~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~------------   85 (232)
T 4go6_B           18 TNVMVTHYFLPPDDAVPSDDDLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLP------------   85 (232)
T ss_dssp             SEEEECEEECCCC------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCT------------
T ss_pred             CCEEEEEEEEEeeCCCCCcEEEEECCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCC------------
Confidence            34558899988765444433333344457899999999999999999999999888776544333211            


Q ss_pred             ceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEE
Q psy7040         162 SHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVT  241 (716)
Q Consensus       162 ~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~  241 (716)
                                                                                 .+|.+|.  +.......+++.
T Consensus        86 -----------------------------------------------------------~~~~~~~--~~~~~~~~~sv~  104 (232)
T 4go6_B           86 -----------------------------------------------------------GFPGAPC--AIKISKSPDGAH  104 (232)
T ss_dssp             -----------------------------------------------------------TSCCCCE--EEEEEEETTEEE
T ss_pred             -----------------------------------------------------------CCCCCCe--eeEEecCCCEEE
Confidence                                                                       1233333  344566789999


Q ss_pred             EEEECCCCCCCCccceEEEEEEeCCCCCe-------------EEccccCcccc-------eEEEcCCCCCCeEEEEEEEE
Q psy7040         242 LDWKVPDDDGGQPIEKYVVDKMDEATGRW-------------TPAGETEGPVT-------GLEVEGLIPNHKYKFRVRAV  301 (716)
Q Consensus       242 l~W~~p~~~~~~~~~~y~v~~~~~~~~~~-------------~~~~~~~~~~~-------~~~i~~L~p~~~y~~~v~a~  301 (716)
                      |+|.+|..++| +|.+|.|+++......+             ..+........       ...+.+|.+++.|.|+|+|.
T Consensus       105 l~W~~P~~~~G-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~t~Y~frV~A~  183 (232)
T 4go6_B          105 LTWEPPSVTSG-KIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAAR  183 (232)
T ss_dssp             EEEECCSCCSS-CCCEEEEEEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEESSSEEEEEEEEEE
T ss_pred             EEEeCCCCCCC-ceeeEEEEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecCccCCceEEEEEEE
Confidence            99999988777 79999999876544322             22211111112       22345789999999999999


Q ss_pred             cCCCCCCCCc
Q psy7040         302 NKQGKSEPLT  311 (716)
Q Consensus       302 n~~g~~~~~~  311 (716)
                      |..|.+..+.
T Consensus       184 N~~G~Gp~S~  193 (232)
T 4go6_B          184 NEKGYGPATQ  193 (232)
T ss_dssp             CSSCBCCCEE
T ss_pred             CCCcCCCCcc
Confidence            9999987665

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.60  E-value=1.5e-14  Score=149.87  Aligned_cols=302  Identities=11%  Similarity=0.064  Sum_probs=173.6

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEec-cCCC-e
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIP-T  457 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~-~p~~-~  457 (716)
                      ....+.|.++...+.+.|+|.|.|..|... +. .....+.....+|.+........ ...|..+.|.|.+.+ .|.+ .
T Consensus        73 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~-~~-~~~l~V~~~~~~P~v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~  149 (438)
T 1qgc_4           73 TDFTLTIDPVEADDVATYYCQQSNEVPLTF-GA-GTKLDLKRADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDIN  149 (438)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEECSSTTCCB-CC-CEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCEE
T ss_pred             CcEEEEeCCCcCcCCeeEEEEEecCCCccc-cC-ceeEEecCCCCCCEEEecCCChh-hccCCceEEEEEEccccCCCcE
Confidence            345799999999999999999999876321 11 11222222233555432111111 124778999999977 6766 8


Q ss_pred             EEEEeCCeEeccCCcEE--EEeCCC-----eEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE--EEEEEEeCC--
Q psy7040         458 KEWLCNDITIISKDRFK--IVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL--GCSLKWNPP--  526 (716)
Q Consensus       458 ~~W~~~~~~~~~~~~~~--~~~~~~-----~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~--~v~l~W~~p--  526 (716)
                      +.|++++..+.......  +.....     ...|.|.++..+|.|.|+|.|.|..|.......+...  .+.+.-...  
T Consensus       150 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (438)
T 1qgc_4          150 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGL  229 (438)
T ss_dssp             EEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEE
T ss_pred             EEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCCceE
Confidence            99999998876541111  111111     3478999999999999999999998875433333211  111110010  


Q ss_pred             CCCCCCceeeEEEEEEecCCCceeeeEEEc--cceeeee------------------------ccccceeEEEEcCCCCC
Q psy7040         527 EDDGGAPIEYYMVEKMETDTGKVLIKWIRT--NDKRVTI------------------------DNVDYFTKITIRPLQRS  580 (716)
Q Consensus       527 ~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~--~~~~~~~------------------------~~~~~~~~~~i~~L~~~  580 (716)
                      ...+......|.+...+.  +.+.+.|++.  +......                        ........+.|.+++..
T Consensus       230 v~~G~~v~L~C~~~g~p~--~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  307 (438)
T 1qgc_4          230 VKPGGSLKLSCTASGFIF--NRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSA  307 (438)
T ss_dssp             ECTTCCEEEEEEEESSCG--GGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EecCCcEEEEEEEccccc--CCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChh
Confidence            122233334444433221  1234889875  2211100                        00112348999999999


Q ss_pred             CeEEEEEEEEcCCCC-----CccceeeeccC-CCCCCcccee-------eccceeEEEEEEeeEEEEeeeeccCceeeEE
Q psy7040         581 DTAQYTVTATNSQGK-----DQVFIEVVVTD-KPSAPEGPIQ-------WLLTLTDVTWEISNYLQELHSSLMPISLESQ  647 (716)
Q Consensus       581 ~~y~~~v~a~n~~G~-----~~~s~~~~v~~-~p~~~~~~~~-------~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~  647 (716)
                      +.+.|.|.|.|..|.     -.....+.|.. ++..|. +..       ..+..+.|.|.+.|+.        +..-.+.
T Consensus       308 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~-v~~~~~~~~~~~g~~v~L~C~~~g~~--------P~~~~v~  378 (438)
T 1qgc_4          308 DTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPS-VYPLAPGSAAAAASMVTLGCLVKGYF--------PEPVTVT  378 (438)
T ss_dssp             GCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCE-EEEECCCGGGCCSSEEEEEEEEESCB--------SSCCEEE
T ss_pred             hCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCe-EEEcCcccccccCCcEEEEEEecccc--------CCCcEEE
Confidence            999999999995441     11122333432 223333 221       2345566555433320        0000689


Q ss_pred             EEeCCeEeeec------ccc---eeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040         648 YLMNDKRVTID------NVD---YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV  696 (716)
Q Consensus       648 W~~~~~~~~~~------~~~---~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l  696 (716)
                      |+++|..+...      ..+   ....|.|.++..+| |.|+|.|.|..|.......+
T Consensus       379 W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i  435 (438)
T 1qgc_4          379 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  435 (438)
T ss_dssp             EGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence            99999876432      011   11368999988888 99999999999987655544

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.60  E-value=8.6e-16  Score=151.40  Aligned_cols=247  Identities=15%  Similarity=0.105  Sum_probs=158.9

Q ss_pred             cEEEecCCeEEEEEEEeccC-CCeEEEEeCCeEec----cCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040         435 DIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITII----SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p-~~~~~W~~~~~~~~----~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~  509 (716)
                      .+.+.+|+.+.|.|.+.+.+ .+.+.|++++....    ...++..  .  ...|.|.++...|.|.|+|.|.|..|...
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~--~--~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   89 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ--H--KEKLWFVPAKVEDSGHYYCVVRNSSYCLR   89 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEE--C--SSBEECTTCCGGGCSCCEECCCSSSCCCC
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEec--c--CCeEEECCCChhhCEEEEEEEeCCceEEE
Confidence            46789999999999999888 78999999986432    1222222  2  23799999999999999999999988766


Q ss_pred             eEEEEEEEEEEEEEeCCCCC------------CCCceeeEEEEEEe------cCCCceeeeEEEccceeeeec--cccce
Q psy7040         510 GTAKVTVLGCSLKWNPPEDD------------GGAPIEYYMVEKME------TDTGKVLIKWIRTNDKRVTID--NVDYF  569 (716)
Q Consensus       510 ~s~~~~v~~v~l~W~~p~~~------------~~~~i~~y~v~~~~------~~~~~~~~~w~~~~~~~~~~~--~~~~~  569 (716)
                      ....+.+.     -.+|...            .|.   .-.+...-      .+.+.+.+.|++.+.......  .....
T Consensus        90 ~~~~v~v~-----~~~p~~~~~~~~~~~~~~~~g~---~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~  161 (315)
T 1itb_B           90 IKISAKFV-----ENEPNLCYNAQAIFKQKLPVAG---DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK  161 (315)
T ss_dssp             EECCCEEE-----CCCTTSSSCGGGEEEEEEETTS---CEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEET
T ss_pred             EEEEEEEe-----CCCCCcccccccccceEEecCC---CeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecC
Confidence            55444433     0111100            011   11233322      333455699999876552111  11223


Q ss_pred             eEEEEcCCCCCCeEEEEEEEE-cCCCCCcc-ceeee--c--cCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCce
Q psy7040         570 TKITIRPLQRSDTAQYTVTAT-NSQGKDQV-FIEVV--V--TDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPIS  643 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~-n~~G~~~~-s~~~~--v--~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~  643 (716)
                      ..+.|.++...+.+.|+|.|. |..|.... +..+.  +  +..+..|. +.......+.+.   .|-.+   .|.|.+.
T Consensus       162 ~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~-~~~~~~~~~~~~---~g~~v---~l~C~~~  234 (315)
T 1itb_B          162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPV-IVSPANETMEVD---LGSQI---QLICNVT  234 (315)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCE-ECSCCSEEEECC---SSSCE---EEEEEEE
T ss_pred             ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCE-EecCCCCcEEEe---CCCcE---EEEEEEe
Confidence            689999999999999999999 78876522 12221  1  22233333 221111111100   11111   2667666


Q ss_pred             e----eEEEEeCCeEeeeccc------------------ceeeEEEEccCCCCC-cEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         644 L----ESQYLMNDKRVTIDNV------------------DYFTKITIRPLQRSD-TAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       644 ~----~~~W~~~~~~~~~~~~------------------~~~~~~~i~~l~~~~-~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |    .+.|+++|..+.....                  .....|.|.++...| +|.|+|.|.|..|....++.|.|..
T Consensus       235 g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          235 GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             ECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             cCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence            6    7999999998875411                  123489999999999 9999999999999999988888743

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.57  E-value=2.3e-12  Score=130.20  Aligned_cols=421  Identities=14%  Similarity=0.104  Sum_probs=240.4

Q ss_pred             CeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEE
Q psy7040         238 EGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE  317 (716)
Q Consensus       238 ~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~  317 (716)
                      ..+..+|+++...+  .-+.|.+.+.. ..   ..+...  ..+.+.|..|.+++ +.+.|......|..   .....+.
T Consensus        10 ~~~~c~w~~~~~~~--~~~~~~~~~~~-~~---~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~   77 (483)
T 3e0g_A           10 QVWQCSWKAPSGTG--RGTDYEVCIEQ-RS---RSCYQL--EKTSIKIPALSHGD-YEITINSLHDFGSS---TSKFTLN   77 (483)
T ss_dssp             TEEEEBCCCCSSSC--SSCCEEEEECS-SS---CEEEEE--SSSBCCEECCSSSC-CCEEEECSSCC-------CCCEEC
T ss_pred             eEEEEeccCCCCCC--CCceEEEEEeC-Cc---ccchhh--hccceEeecCCccc-eEEEEcccCCCCCC---ceeEEEE
Confidence            35677899765422  24578777543 22   223322  35788999999998 55555554433322   2222233


Q ss_pred             ecCCCCCCCCCCCcEEEeeeC-CeEEEEecCCCCCC-CccceEEEEEEeecCCCc--eEEEeee--cCCCCeE----Eec
Q psy7040         318 AKNPFNQPGKPGTPEIKDFDT-DFVELAWTPPEQNG-GSPIVGYIIEKKEKYSPI--WEKCAQT--EGDTPKG----KVL  387 (716)
Q Consensus       318 ~~~~~~~p~~p~~~~~~~~~~-~~i~l~W~~p~~~~-~~~i~~y~v~~~~~~~~~--~~~~~~~--~~~~~~~----~i~  387 (716)
                      .+.-...|.+|..+.+..... ..+.|+|......- ...-..|.|+........  |......  ......+    +-.
T Consensus        78 ~~~~~~~p~~p~~l~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~i~i~r~~~~~~v~~~~~~~~~~~~~~~~~w~w~s~  157 (483)
T 3e0g_A           78 EQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASD  157 (483)
T ss_dssp             CSCCEECCCCCCBCCCEEETTTTEEEEEEEECGGGCCSCCEEEEEEEEESSSSCEEEEEEEEEECGGGCCEEEEEEEECS
T ss_pred             cccceeccCCCceEEEEecCCCcEEEEEEeCCCCCCCcccceEEEEEEEEcCCccEEEEEEEEEEecCCCceEEEEecCC
Confidence            333336688899888887766 88999998732211 112346788776654222  2222221  1111111    111


Q ss_pred             CCCCCCeEEEEEEEE-eC---CCCCCCCCCCCceEeecC-CCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEe
Q psy7040         388 DLIEGNQYEFRVLAV-NK---GGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  462 (716)
Q Consensus       388 ~l~~~~~Y~~~v~a~-n~---~g~~~~s~~~~~~~~~~~-~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~  462 (716)
                      --.+++.+.++||+. ++   .|.+.+|+.+........ ...+.+   .+.+..+..|.++++.|.+.-+   ......
T Consensus       158 ~plec~~h~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~~~~~~~i---fP~~~vv~~GS~vt~~Ci~~~~---~~~~~l  231 (483)
T 3e0g_A          158 MPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKV---FPQDKVILVGSDITFCCVSQEK---VLSALI  231 (483)
T ss_dssp             SCTTSSCEEEEEEEEEECTTCCSEECCCCCCCCEEECCCCCSSCCE---ESCSEEEETTCCEEEEECCSSC---EEEEES
T ss_pred             CCCCCCccEEEEEEEecccccCCCCCCcCCCChhhccccCCCCcEE---eccCCEEeCCCCEEEEEEeCcc---ccceec
Confidence            224578999999999 33   566567777755554221 112233   2556779999999999987621   122222


Q ss_pred             CCeEeccCCcEEEEeCCCeEEEEECCCCCC--CceeEEEEEEcCCCceeeEEEEEEE-----------------EEEEEE
Q psy7040         463 NDITIISKDRFKIVNDDKSTKLKVFDSKRG--DSGIYTLAVKNSWGTDKGTAKVTVL-----------------GCSLKW  523 (716)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~--~~~~y~~~a~n~~g~~~~s~~~~v~-----------------~v~l~W  523 (716)
                      +.     ..............++|.++...  ..-.|.|....  .  .....+.+.                 .+.++|
T Consensus       232 ~~-----~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~~--~--~~g~~l~vg~PP~~P~nlsC~s~~~~sltCsW  302 (483)
T 3e0g_A          232 GH-----TNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTED--N--IFGTVIFAGYPPDTPQQLNCETHDLKEIICSW  302 (483)
T ss_dssp             SS-----CCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEESS--C--EEEEEEEEECCCCCCEEEEEEBSSTTEEEEEE
T ss_pred             Cc-----ccceeEEecCCEEEEEEeCCCCccCccceEEEecCC--c--ccceEEECcCCCCCCCccEEEecCCCEEEEEE
Confidence            21     11122334556778888888663  23457776522  1  122223222                 899999


Q ss_pred             eCCCCCC--CCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCcccee
Q psy7040         524 NPPEDDG--GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE  601 (716)
Q Consensus       524 ~~p~~~~--~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~  601 (716)
                      +++.+.+  |...+.|.|.++..+.  . ..+......      ......+.|.+|.+.+.|.|+|.|.|..|.+.....
T Consensus       303 ~pg~dt~l~G~~~t~YtL~y~~~g~--~-~~C~~~~~~------~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~S~~~  373 (483)
T 3e0g_A          303 NPGRVTALVGPRATSYTLVESFSGK--Y-VRLKRAEAP------TNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTIL  373 (483)
T ss_dssp             ECCSCCSCCGGGCCEEEEEETTTCC--E-EEECCCSSC------SCSCEEEEEECCTTCCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCCcCCcCCCCCeeEEEEEEECCC--C-ccccCCccc------CCCEEEEEEccCCCCcEEEEEEEEEeCCCCcccceE
Confidence            9987553  3347899999875432  0 111110000      012367889999999999999999999997764322


Q ss_pred             eec--cCCCCCCcc--ceeeccceeEEEEE--------EeeEEEEeeeeccCceeeEEEEeCCeEeeec-ccceeeEEEE
Q psy7040         602 VVV--TDKPSAPEG--PIQWLLTLTDVTWE--------ISNYLQELHSSLMPISLESQYLMNDKRVTID-NVDYFTKITI  668 (716)
Q Consensus       602 ~~v--~~~p~~~~~--~~~~~~~~v~l~w~--------i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~i  668 (716)
                      +.+  ..+|.+|..  +.....+.+.|+|.        +..|.|+|+...-    .-.|..    +... .......+.|
T Consensus       374 ~~~~~~VkP~PP~nl~v~~~~stsl~LsW~~P~~~~~~~L~YeVrYr~~~~----~~~~~~----vsv~~~~~~~~s~~l  445 (483)
T 3e0g_A          374 VNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNS----VQEQRN----VTIQGVENSSYLVAL  445 (483)
T ss_dssp             ECGGGGBCCCCCEEEEECCSSSSSCCEEEECCSCCTTSBCCCEEEEECSSS----CCCEEE----CCCBCCSSSBCCCCC
T ss_pred             EEeccccCCCCCeeeEEEEecCCeEEEEECCCCCCCCceEEEEEEEEECCC----CCceEE----EEEeccCCceeEEEE
Confidence            222  233444432  44456789999998        4678887765210    001211    1000 0112236789


Q ss_pred             ccCCCCCcEEEEEEEEcCCCC---ceeeEEEEEecCCC
Q psy7040         669 RPLQRSDTAQYTVTATNSQGK---DQVFIEVVVTDKPS  703 (716)
Q Consensus       669 ~~l~~~~~y~y~~~a~n~~G~---~~~s~~l~v~~~p~  703 (716)
                      .+|.+++.|.++|+|. ..|.   +.+|..+.+.++.+
T Consensus       446 ~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~T~E~  482 (483)
T 3e0g_A          446 DKLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHLTTEA  482 (483)
T ss_dssp             CSCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCCCCCC
T ss_pred             eccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeECCCC
Confidence            9999999999999999 6676   56666666666543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.57  E-value=2e-14  Score=141.44  Aligned_cols=240  Identities=11%  Similarity=-0.007  Sum_probs=140.6

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC-----ceee
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-----TDKG  510 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g-----~~~~  510 (716)
                      ..+..|+.+.|.|.+.+. .+.+.|++++..+....    ........|.|.++...|.|.|+|.|.|..+     ..+.
T Consensus        33 ~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~  107 (316)
T 3vh8_G           33 AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF----HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSN  107 (316)
T ss_dssp             SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH----HHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCC
T ss_pred             CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee----cCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCC
Confidence            357899999999999887 68899999987653210    1112345799999999999999999987432     2233


Q ss_pred             EEEEEEE----EEEEEEeCC--CCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec------cccceeEEEEcCCC
Q psy7040         511 TAKVTVL----GCSLKWNPP--EDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID------NVDYFTKITIRPLQ  578 (716)
Q Consensus       511 s~~~~v~----~v~l~W~~p--~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~------~~~~~~~~~i~~L~  578 (716)
                      ...+.+.    ...+.-.+.  ...+......|..    . .+.+...|++.+.......      .......+.|.++.
T Consensus       108 ~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~----~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~  182 (316)
T 3vh8_G          108 PVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWS----D-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMM  182 (316)
T ss_dssp             CEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEE----S-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCC
T ss_pred             cEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcC----C-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCC
Confidence            4455553    111221111  1122222233332    1 2234588888766442111      11234789999999


Q ss_pred             CCCeEEEEEEEEcCCCCC---cccee--eeccCCCCCCcccee------eccceeEEEEEEeeEEEEeeeeccCcee---
Q psy7040         579 RSDTAQYTVTATNSQGKD---QVFIE--VVVTDKPSAPEGPIQ------WLLTLTDVTWEISNYLQELHSSLMPISL---  644 (716)
Q Consensus       579 ~~~~y~~~v~a~n~~G~~---~~s~~--~~v~~~p~~~~~~~~------~~~~~v~l~w~i~~y~v~~~~~~~~~~~---  644 (716)
                      ..+.+.|+|.|.|..|..   ..+..  +.|...+..|. +..      ..+..+.              |.|.+..   
T Consensus       183 ~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~-i~~~~~~~v~~G~~v~--------------L~C~~~~~~~  247 (316)
T 3vh8_G          183 LALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPS-LSAQPGPKVQAGESVT--------------LSCSSRSSYD  247 (316)
T ss_dssp             GGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCE-EEEESCSCCCTTSCCE--------------EEEEESSCCS
T ss_pred             hhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCe-EEeCCCCeecCCCcEE--------------EEEECCCCCc
Confidence            999999999999998742   22332  33444333333 221      1234455              4444433   


Q ss_pred             eEEEEeCCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCC-----ceeeEEEEEecCC
Q psy7040         645 ESQYLMNDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGK-----DQVFIEVVVTDKP  702 (716)
Q Consensus       645 ~~~W~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~-----~~~s~~l~v~~~p  702 (716)
                      .+.|+++|..+...       .......|.|.++.  |+|.|+|.|.|..+.     .+....|.|..+|
T Consensus       248 ~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          248 MYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             EEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             EEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence            89999999766532       12233789999999  999999999998774     2444556665544

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.56  E-value=2.2e-13  Score=134.75  Aligned_cols=241  Identities=10%  Similarity=0.113  Sum_probs=139.5

Q ss_pred             cccEEEecCCeEEEEEEEecc-CCCeEEEEeCCeEec---------cCCcEEEEeC-----CCeEEEEECCCCCCCceeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDITII---------SKDRFKIVND-----DKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~~~~---------~~~~~~~~~~-----~~~~~l~i~~l~~~~~~~y  497 (716)
                      +..+.+..|+.+.|.|.+.+. |.+.+.|++++....         ...++....+     .....|.|.++...|.|.|
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   89 (327)
T 2wng_A           10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTY   89 (327)
T ss_dssp             CSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEE
T ss_pred             CCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEE
Confidence            346789999999999999987 889999999874321         0113332211     3456799999999999999


Q ss_pred             EEEEEcCCCcee-----eEEEEEEE----EEEEEEeCCC---CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecc
Q psy7040         498 TLAVKNSWGTDK-----GTAKVTVL----GCSLKWNPPE---DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN  565 (716)
Q Consensus       498 ~~~a~n~~g~~~-----~s~~~~v~----~v~l~W~~p~---~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~  565 (716)
                      +|.|.|..+...     ....+.+.    ...+.  .|.   ..+......|.+...+..  ...+.|++.+........
T Consensus        90 ~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~--~~~~~~~~g~~~~l~C~~~g~p~~--~~~v~W~k~g~~l~~~~~  165 (327)
T 2wng_A           90 YCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS--GPAARATPQHTVSFTCESHGFSPR--DITLKWFKNGNELSDFQT  165 (327)
T ss_dssp             EEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE--CCSSCBCTTCEEEEEEEEEEEBSS--CCEEEEEETTEECCCEEE
T ss_pred             EEEeecCCCcceeEeecCcEEEEEEecCCCceee--ccccccCCCCEEEEEEEEeCccCC--CcEEEEEECCEEcccccc
Confidence            999999876421     22344444    11121  221   222333344555433322  114999998765432210


Q ss_pred             ------cc----ceeEEEEcCCCCCCeEEEEEEEEcCCCCCc-cceeee----ccCCCCCCccceee-ccceeEEEEEEe
Q psy7040         566 ------VD----YFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVV----VTDKPSAPEGPIQW-LLTLTDVTWEIS  629 (716)
Q Consensus       566 ------~~----~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~-~s~~~~----v~~~p~~~~~~~~~-~~~~v~l~w~i~  629 (716)
                            ..    ....+.|......+.+.|+|.|.|..|.+. ......    +..+|........+ .+..+.|     
T Consensus       166 ~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l-----  240 (327)
T 2wng_A          166 NVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNV-----  240 (327)
T ss_dssp             EEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEE-----
T ss_pred             ccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCCcCCCCcEEE-----
Confidence                  00    012355555556667999999999988642 222222    23443211100001 2444554     


Q ss_pred             eEEEEeeeeccCcee------eEEEEeCCeEeeec-------c-cc---eeeEEEEccCCCCCcEEEEEEEEcCCCCce
Q psy7040         630 NYLQELHSSLMPISL------ESQYLMNDKRVTID-------N-VD---YFTKITIRPLQRSDTAQYTVTATNSQGKDQ  691 (716)
Q Consensus       630 ~y~v~~~~~~~~~~~------~~~W~~~~~~~~~~-------~-~~---~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~  691 (716)
                               .|.+.|      .+.|+++|+.+...       . .+   ....|.|..+..+|.|.|+|.|.|.+|...
T Consensus       241 ---------~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~  310 (327)
T 2wng_A          241 ---------TCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAV  310 (327)
T ss_dssp             ---------EEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCE
T ss_pred             ---------EEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCc
Confidence                     444444      58999999988653       1 11   114588999999999999999999998763

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.56  E-value=4.7e-15  Score=137.41  Aligned_cols=155  Identities=21%  Similarity=0.266  Sum_probs=96.7

Q ss_pred             CCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCc
Q psy7040         252 GQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP  331 (716)
Q Consensus       252 ~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~  331 (716)
                      +..+++|.+++...... +..... ....+++.+.+|.|++.|.|+|+|.|..|.+..+......+  ....+|.+| .+
T Consensus        19 ~~~Vt~Y~~~~~~~~~~-~~~~~~-~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t--~~~~~~~~~-~~   93 (232)
T 4go6_B           19 NVMVTHYFLPPDDAVPS-DDDLGT-VPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKT--CLPGFPGAP-CA   93 (232)
T ss_dssp             EEEECEEECCCC--------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEEC--CCTTSCCCC-EE
T ss_pred             CEEEEEEEEEeeCCCCC-cEEEEE-CCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeee--cCCCCCCCC-ee
Confidence            34577888876543322 222222 24467899999999999999999999999987776653222  222334444 44


Q ss_pred             EEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc-------------eEEEeeecCCCCe-------EEecCCCC
Q psy7040         332 EIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI-------------WEKCAQTEGDTPK-------GKVLDLIE  391 (716)
Q Consensus       332 ~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-------------~~~~~~~~~~~~~-------~~i~~l~~  391 (716)
                      .....+.+++.|+|.+|..++| +|.+|.|+++..+...             |............       ..+.+|.+
T Consensus        94 ~~~~~~~~sv~l~W~~P~~~~G-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  172 (232)
T 4go6_B           94 IKISKSPDGAHLTWEPPSVTSG-KIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTT  172 (232)
T ss_dssp             EEEEEETTEEEEEEECCSCCSS-CCCEEEEEEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEESS
T ss_pred             eEEecCCCEEEEEEeCCCCCCC-ceeeEEEEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecCcc
Confidence            5556788999999999887665 8999999998765332             2222211111122       23457899


Q ss_pred             CCeEEEEEEEEeCCCCCCCCC
Q psy7040         392 GNQYEFRVLAVNKGGPGEPSD  412 (716)
Q Consensus       392 ~~~Y~~~v~a~n~~g~~~~s~  412 (716)
                      ++.|.|+|+|.|..|.|++|+
T Consensus       173 ~t~Y~frV~A~N~~G~Gp~S~  193 (232)
T 4go6_B          173 KPAIIFRIAARNEKGYGPATQ  193 (232)
T ss_dssp             SEEEEEEEEEECSSCBCCCEE
T ss_pred             CCceEEEEEEECCCcCCCCcc
Confidence            999999999999999998775

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.54  E-value=2.7e-14  Score=138.62  Aligned_cols=251  Identities=12%  Similarity=0.019  Sum_probs=139.3

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCC-CeEEEEECCCCCCCceeEEEEEEcCCCc---ee
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLAVKNSWGT---DK  509 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~l~~~~~~~y~~~a~n~~g~---~~  509 (716)
                      ..+.+.+|+.+.|.|.+.+.    +.|++++..+.  ........+ ....|.|.++...|.|.|+|.|.|..|.   ..
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   81 (289)
T 3mjg_X            8 PELVLNVSSTFVLTCSGSAP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDER   81 (289)
T ss_dssp             SEEECCTTCCEEEEEEESSC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCC
T ss_pred             CeEEEeCCCcEEEEEeccce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcE
Confidence            35778999999999998875    99999998762  122222222 1468999999999999999999998876   22


Q ss_pred             eEEEEEEEEEEEEEeCC--------CCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCC
Q psy7040         510 GTAKVTVLGCSLKWNPP--------EDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSD  581 (716)
Q Consensus       510 ~s~~~~v~~v~l~W~~p--------~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~  581 (716)
                      .+..+.+......+.+.        ...+......|.+.     .+.+...|..................+.    ...+
T Consensus        82 ~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-----~p~~~v~w~~~~~~~~~~~~~~~~~~~~----~~~d  152 (289)
T 3mjg_X           82 KRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-----DPQLVVTLHEKKGDVALPVPYDHQRGFS----GIFE  152 (289)
T ss_dssp             EEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-----CTTSCEEEEESSCCSCCCCCEETTTEEE----ECCC
T ss_pred             EeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-----CCCceEEEEeCCCCCccceeecCCcCee----eecc
Confidence            33333322000000000        00111112222222     2334588887652221110000011122    3567


Q ss_pred             eEEEEEEEEcCCCCCccc-eeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEee
Q psy7040         582 TAQYTVTATNSQGKDQVF-IEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVT  656 (716)
Q Consensus       582 ~y~~~v~a~n~~G~~~~s-~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~  656 (716)
                      .+.|+|.|.|..|..... ..+.+..+ ..|. +...... ..+   ..|-.+   .|.|.+.|    .+.|+++++...
T Consensus       153 ~G~Y~C~a~n~~~~~~s~~~~l~v~~~-~~p~-i~~~~~~-~~v---~~G~~v---~L~C~~~g~p~p~v~W~~~~~~~~  223 (289)
T 3mjg_X          153 DRSYICKTTIGDREVDSDAYYVYRLQV-SSIN-VSVNAVQ-TVV---RQGENI---TLMCIVIGNEVVNFEWTYPRKESG  223 (289)
T ss_dssp             SSEEEEEEEETTEEEECCCEEEEECCC-CCCC-CEEEESC-SEE---ETTSCE---EEEEEEESCSSBEEEEECTTSSSS
T ss_pred             CcEEEEEEEeCCceeeeeeEEEEecCC-CCCC-cEEeCCc-cee---EcCCCE---EEEEEECCCCCcceEEEcCCccCC
Confidence            899999999876543222 22333331 1222 2111111 110   011112   25666655    899997665322


Q ss_pred             ec-----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCC
Q psy7040         657 ID-----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP  708 (716)
Q Consensus       657 ~~-----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~p  708 (716)
                      ..           .......|.|.++...|+|.|+|.|.|..|....+..|.|...|.....+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~~~~  286 (289)
T 3mjg_X          224 RLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHH  286 (289)
T ss_dssp             CCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC------
T ss_pred             CcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCcccc
Confidence            21           12344789999999999999999999999999999999999988776543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=144.48  Aligned_cols=248  Identities=15%  Similarity=0.128  Sum_probs=158.2

Q ss_pred             cccEEEecCCeEEEEEEEe-------ccCCCeEEEEeCCeEe--ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         433 LSDIKVRAGSNFEFDINVI-------GEPIPTKEWLCNDITI--ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~-------~~p~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +..+.+.+|+.+.|.|.+.       +.|.+.+.|++++..+  ......++...  ...|.|.++...|.|.|+|.|.|
T Consensus        25 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~~~n  102 (339)
T 3o4o_C           25 YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQ--DGALWLLPALQEDSGTYVCTTRN  102 (339)
T ss_dssp             SCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEE--TTEEEESSBCTTCCEEEECCEEE
T ss_pred             ceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEee--CCeEEECCCCcccCEEEEEEEEC
Confidence            4568899999999999998       8899999999998873  33212233222  23799999999999999999999


Q ss_pred             CCCceeeEEEEEEEE----------EEEEEeCCCCCCCCceeeEEEEEE-----ecCCCceeeeEEEccceeeeec----
Q psy7040         504 SWGTDKGTAKVTVLG----------CSLKWNPPEDDGGAPIEYYMVEKM-----ETDTGKVLIKWIRTNDKRVTID----  564 (716)
Q Consensus       504 ~~g~~~~s~~~~v~~----------v~l~W~~p~~~~~~~i~~y~v~~~-----~~~~~~~~~~w~~~~~~~~~~~----  564 (716)
                      ..|....+..+.+..          .....    ..+..    ..+...     ..+.+.+.+.|++.+.......    
T Consensus       103 ~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~----~~g~~----v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~  174 (339)
T 3o4o_C          103 ASYCDKMSIELRVFENTDAFLPFISYPQIL----TLSTS----GVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFL  174 (339)
T ss_dssp             TTEEEEEEEEEEEECSCGGGHHHHCEEEEE----ETTSC----EEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEE
T ss_pred             CcceEEEEEEEEEEcCCCccccccccceEE----ECCCC----EEEEecCCcccccCCCCceEEEecCCeeCCCCCceeE
Confidence            998777777777660          01100    01111    222332     2223445589998765443110    


Q ss_pred             cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCc----cceeeeccCCC--CCCccceeeccceeEEEEEEeeEEEEeeee
Q psy7040         565 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ----VFIEVVVTDKP--SAPEGPIQWLLTLTDVTWEISNYLQELHSS  638 (716)
Q Consensus       565 ~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~----~s~~~~v~~~p--~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~  638 (716)
                      .......+.|.++...+.+.|+|.|.|..|...    ....+.|..++  ..|. +.... ..+.+.   .|-   -..|
T Consensus       175 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~-i~~~~-~~~~v~---~G~---~v~L  246 (339)
T 3o4o_C          175 SVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPV-IISPL-KTISAS---LGS---RLTI  246 (339)
T ss_dssp             ECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCE-ECCCS-CCCCCC---CCS---CCCC
T ss_pred             EcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCE-EecCC-ceeEec---cCC---CEEE
Confidence            111225799999999999999999999887432    22233343322  1222 21111 111000   111   1127


Q ss_pred             ccCc---ee-----eEEEEeCCeEeeec---------------ccce---eeEEEEccCCCCCc-EEEEEEEEcCCCCce
Q psy7040         639 LMPI---SL-----ESQYLMNDKRVTID---------------NVDY---FTKITIRPLQRSDT-AQYTVTATNSQGKDQ  691 (716)
Q Consensus       639 ~~~~---~~-----~~~W~~~~~~~~~~---------------~~~~---~~~~~i~~l~~~~~-y~y~~~a~n~~G~~~  691 (716)
                      .|.+   .|     .+.|+++|..+...               ..+.   ...|.|.++...|. |.|+|.|.|..|...
T Consensus       247 ~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~  326 (339)
T 3o4o_C          247 PCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQT  326 (339)
T ss_dssp             CCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEEC
T ss_pred             EEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceE
Confidence            7877   44     79999998765321               0000   12799999999997 999999999999988


Q ss_pred             eeEEEEE
Q psy7040         692 VFIEVVV  698 (716)
Q Consensus       692 ~s~~l~v  698 (716)
                      ....+.+
T Consensus       327 ~~~~~~~  333 (339)
T 3o4o_C          327 LRTTVKE  333 (339)
T ss_dssp             CBCCCCC
T ss_pred             EEEEhhH
Confidence            7766543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.53  E-value=5.6e-13  Score=129.48  Aligned_cols=229  Identities=17%  Similarity=0.212  Sum_probs=152.9

Q ss_pred             CceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCc-eeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCC
Q psy7040         173 GMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDG  251 (716)
Q Consensus       173 ~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~  251 (716)
                      ..++.+...+....|.|.++...|+|.|+|.|.|..|.. +..+.+.+..+|.....+-......+..+.|.|.....  
T Consensus        48 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~--  125 (291)
T 2wim_A           48 TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSS--  125 (291)
T ss_dssp             BTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCS--
T ss_pred             CCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccC--
Confidence            455666666667899999999999999999999999985 46777888777755443334445678899999986322  


Q ss_pred             CCccceEEEEEEeC-----CCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCC
Q psy7040         252 GQPIEKYVVDKMDE-----ATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG  326 (716)
Q Consensus       252 ~~~~~~y~v~~~~~-----~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~  326 (716)
                        +...+.+.....     .......     .....+.|.++...+.+.|+|.|.|..+......               
T Consensus       126 --p~~~v~W~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~---------------  183 (291)
T 2wim_A          126 --PAPAVSWLYHNEEVTTISDNRFAM-----LANNNLQILNINKSDEGIYRCEGRVEARGEIDFR---------------  183 (291)
T ss_dssp             --SCCEEEEECC----CBCCCSSEEE-----CTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEE---------------
T ss_pred             --CCCEEEEEECCccccccCCceEEE-----ccCCCEEEEecchhhCEEEEEEEEECCCCeeEEe---------------
Confidence              222232222111     0111111     1245799999999999999999987543210000               


Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  406 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g  406 (716)
                                   .+.|.-..                                                           
T Consensus       184 -------------~~~~~v~~-----------------------------------------------------------  191 (291)
T 2wim_A          184 -------------DIIVIVNV-----------------------------------------------------------  191 (291)
T ss_dssp             -------------EEEEEEEB-----------------------------------------------------------
T ss_pred             -------------eEEEEecc-----------------------------------------------------------
Confidence                         00000000                                                           


Q ss_pred             CCCCCCCCCceEeecCCCCCcccc-cccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEE
Q psy7040         407 PGEPSDPTAPHIARAKKVSPYINR-DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK  485 (716)
Q Consensus       407 ~~~~s~~~~~~~~~~~~~~P~~~~-~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~  485 (716)
                                        +|.+.. .......+..|..+.|.|.+.+.|.+.+.|++++..+....++.+.  .....|.
T Consensus       192 ------------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~--~~~~~L~  251 (291)
T 2wim_A          192 ------------------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELT  251 (291)
T ss_dssp             ------------------CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEEC--STTCEEE
T ss_pred             ------------------CCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEc--CCccEEE
Confidence                              000000 0000123456888899999999999999999999998877766553  3346899


Q ss_pred             ECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         486 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       486 i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      |.++...|.|.|+|.|.|..|....++.+.+.
T Consensus       252 i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  283 (291)
T 2wim_A          252 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  283 (291)
T ss_dssp             EESCCSTTCEEEEEEEEETTEEEEEEEEEEC-
T ss_pred             EeeCCcccCEEEEEEEEECCCceeeeEEEEEE
Confidence            99999999999999999999999888877765

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.52  E-value=2.5e-14  Score=139.23  Aligned_cols=253  Identities=14%  Similarity=0.175  Sum_probs=153.1

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +|.|.. ....+.+.+|+.+.|.|.+.+.    +.|+++..     ....+...+....|.|.++...|.|.|+|.|.|.
T Consensus         4 ~P~i~~-~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   73 (292)
T 4dkd_C            4 IPVIEP-SVPELVVKPGATVTLRCVGNGS----VEWDGPPS-----PHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGD   73 (292)
T ss_dssp             CCEEES-CCSSCEECTTCCEEEEEECSSC----CCBCCCCC-----SSCEECCBTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred             CceecC-CCCeEEEcCCCcEEEEEcCCCc----eEEccCCC-----CceEEeccCceEEEEEcccccccCEEEEEEEccC
Confidence            444432 2345689999999999998774    89996543     2334445556779999999999999999999998


Q ss_pred             CCceeeEEEEEEEEEEEEEe-CCC----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec---cccceeEEEEcC
Q psy7040         505 WGTDKGTAKVTVLGCSLKWN-PPE----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID---NVDYFTKITIRP  576 (716)
Q Consensus       505 ~g~~~~s~~~~v~~v~l~W~-~p~----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~i~~  576 (716)
                      .|..+..+.+.+......+. .+.    ..+......|.+.. +.  ..+.+.|++.+.......   .......+.|.+
T Consensus        74 ~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~  150 (292)
T 4dkd_C           74 PLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PV--LEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHR  150 (292)
T ss_dssp             ---CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GG--GGSSEEEEEGGGCCCCSSCCEECCSSSCCEETT
T ss_pred             CCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CC--cceeEEEEecCCCccccCCcccccCCceEEECC
Confidence            88777777666651000000 000    11122233444332 11  113489998743221110   111224489999


Q ss_pred             CCCCCeEEEEEEEEcCCCCCcc-ceeeeccCC-CCCCccceee-------ccceeEEEEEEeeEEEEeeeeccCcee---
Q psy7040         577 LQRSDTAQYTVTATNSQGKDQV-FIEVVVTDK-PSAPEGPIQW-------LLTLTDVTWEISNYLQELHSSLMPISL---  644 (716)
Q Consensus       577 L~~~~~y~~~v~a~n~~G~~~~-s~~~~v~~~-p~~~~~~~~~-------~~~~v~l~w~i~~y~v~~~~~~~~~~~---  644 (716)
                      +...+.+.|+|.|.|..|.... ...+.|... +..|. +...       .+..+.              |.|.+.+   
T Consensus       151 ~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~-i~~~~~~~~~~~g~~v~--------------l~C~~~~~~~  215 (292)
T 4dkd_C          151 AKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPA-LTLVPAELVRIRGEAAQ--------------IVCSASSVDV  215 (292)
T ss_dssp             CCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCE-EEEESSCBCCCSSSCEE--------------EEEEEEESSS
T ss_pred             CCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCe-EEccCCceeEecCCCEE--------------EEEEecCCCC
Confidence            9999999999999998764322 333445432 22332 2211       233344              5555555   


Q ss_pred             --eEEEEeCCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCC
Q psy7040         645 --ESQYLMNDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP  705 (716)
Q Consensus       645 --~~~W~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p  705 (716)
                        .+.|++++..+...        .......|.|.++...|+|.|+|.|.|..|....+..|.|.....++
T Consensus       216 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~  286 (292)
T 4dkd_C          216 NFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS  286 (292)
T ss_dssp             CCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-------
T ss_pred             ceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence              67888888755432        11122589999999999999999999999999999999998877665

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}

Probab=99.51  E-value=4.2e-13  Score=120.91  Aligned_cols=179  Identities=15%  Similarity=0.167  Sum_probs=124.5

Q ss_pred             CCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCC
Q psy7040         225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQ  304 (716)
Q Consensus       225 ~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~  304 (716)
                      +|.+ +.+... +....|.|++|...++ .+ .|.|+++..  ..|...- .......+.|.+|.++..|.++|+|.+..
T Consensus         4 ~P~n-v~~~s~-n~~~iL~W~pp~~~~~-~v-~Y~V~y~~~--~~w~~~c-~~~~~~~c~lt~l~~~~~Y~~rV~A~~~~   76 (201)
T 3lqm_A            4 PPEN-VRMNSV-NFKNILQWESPAFAKG-QL-TFTAQYLSY--RIFQDKC-MQTTLTECDFSSLSKYGDHTLRVRAEFAD   76 (201)
T ss_dssp             CCEE-EEEEEE-TTEEEEEEECCCCSSS-CC-EEEEEEEET--TEEEEEE-EEESSSEEECTTSCSSSCEEEEEEEEETT
T ss_pred             CCcc-cEEEEE-CCceEEEECCCCCCCC-Ce-EEEEEEEEC--CCcccCc-CccCCCEEECCCCccCCCEEEEEEEecCC
Confidence            4555 666544 4567899998876555 34 599999875  3576322 12356889999999999999999999988


Q ss_pred             CCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCc---------cceEEEEEEeecCCCceEEEe
Q psy7040         305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGS---------PIVGYIIEKKEKYSPIWEKCA  375 (716)
Q Consensus       305 g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~---------~i~~y~v~~~~~~~~~~~~~~  375 (716)
                      |.|.++..  .+.. .....+++| .+.+ ...+++|.|.|.+|...+++         .+..|.|.|...++.....  
T Consensus        77 ~~S~~s~~--~f~~-~~~t~~~PP-~v~~-~~~~~si~v~w~~P~~~~~~~~~~~~~~~~~l~Y~v~y~~~~~~~~~~--  149 (201)
T 3lqm_A           77 EHSDWVQI--TFSP-VDDTIIGPP-GMQV-EVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQ--  149 (201)
T ss_dssp             EECCCEEE--EECH-HHHSBCCCC-EEEE-EEETTEEEEEEECCEEECSSCEEEHHHHCTTCEEEEEEEETTCCCCEE--
T ss_pred             CcCcceee--eeee-cccCeeCCC-EEEE-EEeCCEEEEEEcCCCccCCCcccCHHHhCCceEEEEEEEECCCCcEEE--
Confidence            77766542  1111 111334555 5777 45678999999998644322         3789999887765433222  


Q ss_pred             eecCCCCeEEecCCCCCCeEEEEEEEEeC--CCCCCCCCCCCceE
Q psy7040         376 QTEGDTPKGKVLDLIEGNQYEFRVLAVNK--GGPGEPSDPTAPHI  418 (716)
Q Consensus       376 ~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~--~g~~~~s~~~~~~~  418 (716)
                       .......+.|.+|.|++.|.|+|+|.+.  .|.|.+|......+
T Consensus       150 -~~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T  193 (201)
T 3lqm_A          150 -ITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQT  193 (201)
T ss_dssp             -ECCSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCCEEEEC
T ss_pred             -EEecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCCEeEEe
Confidence             2345678999999999999999999996  56777776654444

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.50  E-value=2.7e-12  Score=116.37  Aligned_cols=185  Identities=23%  Similarity=0.349  Sum_probs=124.2

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEe-CCCeEEEEECCCCCCCceeEEEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~-~~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      +|.+. ..+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.. .+....|.|.++...|.|.|+|.|.
T Consensus         4 ~P~~~-~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            4 APHFK-EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCEEE-ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCEEE-EcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            45543 2345688999999999999999999999999999887643 4555443 4556799999999999999999999


Q ss_pred             cCCCceeeEEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCe
Q psy7040         503 NSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDT  582 (716)
Q Consensus       503 n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~  582 (716)
                      |..|.......+.+..... ...+..     +.                       ..         ...   .+..|..
T Consensus        83 n~~g~~~~~~~l~V~~~p~-~~~~~~-----~~-----------------------~~---------~~~---~~~~g~~  121 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAK-IHLPKT-----LE-----------------------GM---------GAV---HALRGEV  121 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEE-ECCSSC-----BT-----------------------TB---------EEE---EEETTCC
T ss_pred             ECCCceeEEEEEEEcCCCc-CCCCcc-----cc-----------------------cc---------CeE---EEeCCCE
Confidence            9887665554444431000 000000     00                       00         000   0122333


Q ss_pred             EEEEEEEEcCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeec----
Q psy7040         583 AQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTID----  658 (716)
Q Consensus       583 y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~----  658 (716)
                      ..+.|.+..   .            |  +.                                .+.|++++..+...    
T Consensus       122 ~~l~C~~~g---~------------p--~p--------------------------------~i~W~~~~~~~~~~~~~~  152 (197)
T 2j8h_A          122 VSIKIPFSG---K------------P--DP--------------------------------VITWQKGQDLIDNNGHYQ  152 (197)
T ss_dssp             CEEEEEEEE---E------------S--CC--------------------------------EEEEEESSCEECSSSSCE
T ss_pred             EEEEEEEEe---c------------C--CC--------------------------------cEEEEECCEEeecCCCEE
Confidence            444454421   0            0  00                                57889988877644    


Q ss_pred             --ccceeeEEEEcc-CCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         659 --NVDYFTKITIRP-LQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       659 --~~~~~~~~~i~~-l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                        .......|.|.+ +...|.|.|+|.|.|..|....+..|.|.+
T Consensus       153 ~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          153 VIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             EEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence              112346899999 999999999999999999998888888864

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} PDB: 3va2_C

Probab=99.50  E-value=8.4e-11  Score=112.90  Aligned_cols=277  Identities=14%  Similarity=0.093  Sum_probs=170.2

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCC-CccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGG-EPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~-~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +.||.+|.+...+...+.|+|++|....+ ..-..|.|.++..+...|.....   .......|..+  |.++|++....
T Consensus        12 ~~pP~nl~i~~~~~~~~~l~W~~~p~~~~~~~~l~Y~v~~~~~~~~~w~~~~t---~~~~~~~L~~~--~~~rVrt~~~~   86 (317)
T 3qt2_A           12 LLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRIT---ESKAVTILHMG--FSASVRTILQN   86 (317)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECCTTSSCSSSCCEEEEEEEESSCEEEEESSS---EEEEECCCTTC--EEEEEEEEEEC
T ss_pred             cCCCcceEEEECCCceEEEEECCCCccccCcCcEEEEEEECCCCCcccEeecc---ccccccccCCC--eEEEEEEEECC
Confidence            56888888888888999999999432222 22467999999888888886543   33446667554  99999998765


Q ss_pred             ccCC-CccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCce
Q psy7040         134 GESE-PLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDS  212 (716)
Q Consensus       134 g~~~-~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  212 (716)
                      |.+. +|..+..+...++ .                                                            
T Consensus        87 ~~s~~~S~w~~~~~~~~~-G------------------------------------------------------------  105 (317)
T 3qt2_A           87 DHSLLASSWASAELHAPP-G------------------------------------------------------------  105 (317)
T ss_dssp             SSCEEECCCEEEEECCCS-C------------------------------------------------------------
T ss_pred             CCCccccccccccccCCC-C------------------------------------------------------------
Confidence            5322 3333322222111 1                                                            


Q ss_pred             eEEEEEEecCCCCCCCCeEEeEEe-----------CCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc--Cc-
Q psy7040         213 VEVEVIVLDKPSPPGGPLKVSNVH-----------AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET--EG-  278 (716)
Q Consensus       213 ~~~~~~v~~~p~~p~~~~~~~~~~-----------~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~--~~-  278 (716)
                              .+|..|.+ +.+....           ...++.+|.+ ..+.. .-+.|.+.+...+  .+..|...  .. 
T Consensus       106 --------~p~~~p~n-lsC~~~~~~~~~~~~~~~~~~l~CtW~p-G~~~~-~~t~Y~L~y~~~~--~~~eC~~y~~~~~  172 (317)
T 3qt2_A          106 --------SPGTSIVN-LTCTTNTTEDNYSRLRSYQVSLHCTWMV-GTDAP-EDTQYFLYYRYGS--WTEECQEYSMDTL  172 (317)
T ss_dssp             --------BGGGSCEE-EEEEEEEEECSCSSSCCEEEEEEEEEEC-CTTCC-TTCEEEEEEEETT--EEEECCCEEECTT
T ss_pred             --------CCCCccee-eEEEEccccccccccccccceEEEEeeC-CCCCC-CCeeEEEEEEeCC--CCeeCCccccCCC
Confidence                    13445555 5554444           3679999995 32222 3467988887654  35666422  11 


Q ss_pred             -ccceEEEcCCC----CCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCC
Q psy7040         279 -PVTGLEVEGLI----PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGG  353 (716)
Q Consensus       279 -~~~~~~i~~L~----p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~  353 (716)
                       ....+.+....    ....|.|.|.+.+..+......   ..........|.+|.++.+. ...+.+.|+|.+|...-.
T Consensus       173 ~~~~~C~f~~~~~~~~~~~~~~i~V~gss~~~~i~s~~---~~~~l~~iVkp~PP~nL~v~-~~~~~l~v~W~~P~~~~~  248 (317)
T 3qt2_A          173 GRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIRPFD---QLFALHAIDQINPPLNVTAE-IEGTRMSIQWEKPVSAFP  248 (317)
T ss_dssp             SCEEEEEESSCSCCTTCCSEEEEEEEEECTTSCBCCEE---EEEEHHHHBCCCCCEEEEEE-EETTEEEEEEECCSSSSC
T ss_pred             cceeEEEeCCccccccCcEEEEEEEEcCCCCccccccc---eEEEHHHcCcCCCCceeEEE-EeCCcEEEEECCCCcccc
Confidence             23467776653    3467888888766444322111   11111122457888889888 446899999998743211


Q ss_pred             ccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC---CCCCCCCCCCceE
Q psy7040         354 SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG---GPGEPSDPTAPHI  418 (716)
Q Consensus       354 ~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~---g~~~~s~~~~~~~  418 (716)
                      ..-..|+|.|+......+.... .  ...++.+ .|.+++.|.++|+|....   +.|.+|+.+..+.
T Consensus       249 ~~~L~Yevryr~~~~~~~~~~~-~--~~~~~~l-~l~p~~~Y~vqVR~k~~~~~~~~g~WSeWS~~~~  312 (317)
T 3qt2_A          249 IHCFDYEVKIHNTRNGYLQIEK-L--MTNAFIS-IIDDLSKYDVQVRAAVSSMCREAGLWSEWSQPIY  312 (317)
T ss_dssp             GGGEEEEEEEEETTTCCEEEEE-E--SSSEEEE-ECCTTCCEEEEEEEEECTTTSSCCCCCCCCCCEE
T ss_pred             cCceEEEEEEEeCCCCcceEEE-E--eeeEEEe-ecCCCCEEEEEEEEeecCCCCCCCCcCCCCCCEE
Confidence            2346899999976533332222 2  3456655 499999999999999543   4567777765443

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.49  E-value=2.4e-11  Score=126.76  Aligned_cols=296  Identities=13%  Similarity=0.098  Sum_probs=163.7

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCC----CCCCCCCceEee-cCCCCCcccccccccEEEecCCeEEEEEEEecc-
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPG----EPSDPTAPHIAR-AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-  453 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~----~~s~~~~~~~~~-~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~-  453 (716)
                      ...++.|.++++.+...|.|.+.|..|..    ...... ...+. ..+.+|.+.....  ..+..|..+.|.|.+.+. 
T Consensus        78 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~-~l~V~~~~~~~P~i~~~~~--~~~~~g~~v~L~C~~~g~~  154 (475)
T 1iga_A           78 TTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGT-LVTVSSASPTSPKVFPLSL--CSTQPDGNVVIACLVQGFF  154 (475)
T ss_pred             CeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCce-EEEeccCCCcCCeEEecCc--cccCCCCeEEEEEEEeeec
Confidence            34579999999999999999999976521    111111 12222 2233455442221  123689999999999887 


Q ss_pred             CC-C-eEEEEeCCeEeccCCcEEEE--eCCC---eEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE--E--------
Q psy7040         454 PI-P-TKEWLCNDITIISKDRFKIV--NDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT--V--------  516 (716)
Q Consensus       454 p~-~-~~~W~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~--v--------  516 (716)
                      |. + .+.|++++..........+.  .++.   ...|.|......|.|.|+|.|.|..+.. ....+.  +        
T Consensus       155 P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~v~l~V~~~~~~~~  233 (475)
T 1iga_A          155 PQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS-QDVTVPCPVPSTPPTPS  233 (475)
T ss_pred             CCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc-eeeeEecccccCccccc
Confidence            55 4 99999887532110000000  1111   2357888888889999999999998742 222222  1        


Q ss_pred             -----------EEEEEEEeCCC----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec-----c-c---cceeEE
Q psy7040         517 -----------LGCSLKWNPPE----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID-----N-V---DYFTKI  572 (716)
Q Consensus       517 -----------~~v~l~W~~p~----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~-----~-~---~~~~~~  572 (716)
                                 ....+.-.+|.    ..+......|.+.... ....+.+.| ..........     . .   .....+
T Consensus       234 ~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~-p~~~~~i~W-~~~~~~~~~~~~~~~~~~g~~~~~~~L  311 (475)
T 1iga_A          234 PSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLR-DASGVTFTW-TPSSGKSAVQGPPERDLCGCYSVSSVL  311 (475)
T ss_pred             ccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEccc-CCCceEEEE-CCCCcCCccccCceECCCCCEEEEEEE
Confidence                       01112122221    2222333444443211 100135889 3322111000     0 0   012468


Q ss_pred             EEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCcccee-------e-ccceeEEEEEEeeEEEEeeeeccCcee
Q psy7040         573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ-------W-LLTLTDVTWEISNYLQELHSSLMPISL  644 (716)
Q Consensus       573 ~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~-------~-~~~~v~l~w~i~~y~v~~~~~~~~~~~  644 (716)
                      .|.+++..+.+.|+|.|.|..|.......+.+......|. +..       + .+..+.|.+.+.|+.-.        .-
T Consensus       312 ~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~-v~~~~~~~~~v~~g~~~~L~C~~~g~~P~--------~~  382 (475)
T 1iga_A          312 PGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE-VHLLPPPSEELALNELVTLTCLARGFSPK--------DV  382 (475)
T ss_pred             EEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCe-EEEECCChHHhccCCceEEEEEEeeeECC--------CC
Confidence            8999999999999999999988754433332211122222 211       1 13335555544443100        00


Q ss_pred             eEEEEeCCeEeeecc--------c----c----eeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         645 ESQYLMNDKRVTIDN--------V----D----YFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~--------~----~----~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      .+.|+++|..+....        .    +    ....|.|......+.|.|+|.|.|.....
T Consensus       383 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~~  444 (475)
T 1iga_A          383 LVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL  444 (475)
T ss_pred             EEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCCC
Confidence            789999998875431        1    1    11456777777788999999999987653

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.49  E-value=4.6e-12  Score=114.81  Aligned_cols=176  Identities=19%  Similarity=0.384  Sum_probs=125.4

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|......
T Consensus        14 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~   93 (197)
T 3lcy_A           14 MKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSS   93 (197)
T ss_dssp             CCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEE
Confidence            45788999999999999999999999999999999888888888888888999999999999999999999887655544


Q ss_pred             EEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcC
Q psy7040         513 KVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS  592 (716)
Q Consensus       513 ~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~  592 (716)
                      .+.+...... . +..                              ...        ....   +..|..-.+.|.+.. 
T Consensus        94 ~l~v~~~p~~-~-~~~------------------------------~~~--------~~~~---~~~g~~~~l~C~~~~-  129 (197)
T 3lcy_A           94 KLLLQATPQF-H-PGY------------------------------PLK--------EKYY---GAVGSTLRLHVMYIG-  129 (197)
T ss_dssp             EEEEEEEEEE-C-TTS------------------------------CCC--------SEEE---EETTSCEEEEEEEEE-
T ss_pred             EEEEEcCCCC-C-CCc------------------------------cCC--------ccee---ecCCCeEEEEEEEee-
Confidence            4433310000 0 000                              000        0000   112333444444421 


Q ss_pred             CCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeecc------cceeeEE
Q psy7040         593 QGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDN------VDYFTKI  666 (716)
Q Consensus       593 ~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~------~~~~~~~  666 (716)
                        .            |  +.                                .+.|++++..+....      ......|
T Consensus       130 --~------------p--~p--------------------------------~v~W~~~~~~~~~~~~~~~~~~~~~~~L  161 (197)
T 3lcy_A          130 --R------------P--VP--------------------------------AMTWFHGQKLLQNSENITIENTEHYTHL  161 (197)
T ss_dssp             --E------------S--CC--------------------------------EEEEEETTEECCCCSSEEEEECSSEEEE
T ss_pred             --e------------e--CC--------------------------------eeEEeECCEECCCCCceEEEEcCCEEEE
Confidence              0            0  00                                567888888776541      1222689


Q ss_pred             EEccCCC-CCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         667 TIRPLQR-SDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       667 ~i~~l~~-~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      .|.++.. +|.|.|+|.|.|..|....+..|.|.+
T Consensus       162 ~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          162 VMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             EESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            9999995 899999999999999999999998875

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.49  E-value=9.4e-14  Score=110.96  Aligned_cols=95  Identities=40%  Similarity=0.622  Sum_probs=81.5

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc--cCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      ++.|+..+++.+++.+++.|+|++|..++|.+|.+|.|+++..+.+.|..+..  ...+.+++.+|.+++.|.|||+|.|
T Consensus        10 ~p~~P~~P~v~~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N   89 (112)
T 1bpv_A           10 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKN   89 (112)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEEC
T ss_pred             CCCCCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeecccCccCEEEECCCCCCCEEEEEEEEEE
Confidence            45667778899999999999999988788888999999999888888988753  3358999999999999999999999


Q ss_pred             cCcc-CCCccccceEEec
Q psy7040         132 KEGE-SEPLETFSSIIAR  148 (716)
Q Consensus       132 ~~g~-~~~s~~~~~~~~~  148 (716)
                      ..|. |.+|.....++..
T Consensus        90 ~~G~~s~~S~~~~~~t~~  107 (112)
T 1bpv_A           90 AAGAISPPSEPSDAITCR  107 (112)
T ss_dssp             TTSCEEEEEEEEEEECSC
T ss_pred             CCCCCCCCCCCCCCEEeC
Confidence            9996 9988777666554

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.49  E-value=9.5e-14  Score=143.83  Aligned_cols=326  Identities=12%  Similarity=0.033  Sum_probs=176.2

Q ss_pred             ceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCc-eeEEEEEEecCCCCCCCCeEEeE-----EeCCeEEEEEECC
Q psy7040         174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSN-----VHAEGVTLDWKVP  247 (716)
Q Consensus       174 ~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~~~v~~~p~~p~~~~~~~~-----~~~~~~~l~W~~p  247 (716)
                      .|+.+...+....|.|.+++..|+|.|+|.|.|..|.. ...+.+.|.....+|.  +.+..     ..+..+.|.|...
T Consensus        64 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~--v~~~~~~~~~~~g~~~~l~C~~~  141 (438)
T 1qgc_4           64 DRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPT--VSIFPPSSEQLTSGGASVVCFLN  141 (438)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCE--EEEECCCHHHHHTTEEEEEEEEE
T ss_pred             CcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCE--EEecCCChhhccCCceEEEEEEc
Confidence            45555555667899999999999999999999998753 4556777755443443  33321     2356889999852


Q ss_pred             CCCCCCccceEEEEEEeCC----CC-Ce-EEcc-ccCc---ccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEE
Q psy7040         248 DDDGGQPIEKYVVDKMDEA----TG-RW-TPAG-ETEG---PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE  317 (716)
Q Consensus       248 ~~~~~~~~~~y~v~~~~~~----~~-~~-~~~~-~~~~---~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~  317 (716)
                      ..   .|.. ..+.|...+    .. .. .... ...+   ....+.|.++...+.+.|.|.|.|..|...   ..  ..
T Consensus       142 g~---~p~~-~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~---~~--~~  212 (438)
T 1qgc_4          142 NF---YPKD-INVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP---IV--KS  212 (438)
T ss_dssp             EE---BSSC-EEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC---EE--EE
T ss_pred             cc---cCCC-cEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCc---ee--cc
Confidence            21   1111 122222211    01 00 0000 0011   124688889988899999999999776531   11  11


Q ss_pred             ecCCCCCC--CCCCCcEEEeeeCCeEEEEecCCCCCC-CccceEEEE----------EEee---------cCCCceEEEe
Q psy7040         318 AKNPFNQP--GKPGTPEIKDFDTDFVELAWTPPEQNG-GSPIVGYII----------EKKE---------KYSPIWEKCA  375 (716)
Q Consensus       318 ~~~~~~~p--~~p~~~~~~~~~~~~i~l~W~~p~~~~-~~~i~~y~v----------~~~~---------~~~~~~~~~~  375 (716)
                      +......+  ..|...  ....+..+.|.|.....+. ...+..|+-          ....         ..........
T Consensus       213 ~~~~~~~~~~~~~~~~--~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  290 (438)
T 1qgc_4          213 FNRNECEVMLVESGGG--LVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISR  290 (438)
T ss_dssp             EETTC-CCEEEEECCE--EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEE
T ss_pred             cccccceeEEecCCce--EEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEe
Confidence            11000000  011111  2234556777776522110 111222221          0000         0001111111


Q ss_pred             eecCCCCeEEecCCCCCCeEEEEEEEEeCCCCC---CCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEec
Q psy7040         376 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG---EPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG  452 (716)
Q Consensus       376 ~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~---~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~  452 (716)
                      ........+.|.++...+...|.|.|.|..|..   ................+|.+....+ ...+..|+.+.|.|.+.+
T Consensus       291 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~g  369 (438)
T 1qgc_4          291 DNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAP-GSAAAAASMVTLGCLVKG  369 (438)
T ss_dssp             ETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECC-CGGGCCSSEEEEEEEEES
T ss_pred             ecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCc-ccccccCCcEEEEEEecc
Confidence            111223478999999999999999999855421   1111111111112223454432211 122457999999999998


Q ss_pred             c-CCC-eEEEEeCCeEeccCCcEEEEeCCC---eEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         453 E-PIP-TKEWLCNDITIISKDRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       453 ~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      . |.+ .+.|++++..+.......+...+.   ...|.|.+....+ |.|+|.|.|..|.......+
T Consensus       370 ~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i  435 (438)
T 1qgc_4          370 YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  435 (438)
T ss_dssp             CBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred             ccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence            7 877 999999987754211111111111   2258888888778 99999999999987655443

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.47  E-value=2.6e-13  Score=108.92  Aligned_cols=97  Identities=23%  Similarity=0.323  Sum_probs=81.9

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCC---CCc-cceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDG---GEP-LEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~---~~~-i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      +..+|.++.+.+++.+++.|+|++|.+++   +.+ |.+|.|+..+.....|..+.....+.++|.+|.|++.|.|||+|
T Consensus        15 pp~~P~~p~v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~~~~~v~~~~~t~~~v~gL~p~t~Y~frV~A   94 (120)
T 1wfu_A           15 PLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKV   94 (120)
T ss_dssp             CCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEEEEEE
T ss_pred             CCCCCCCceeceEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCCceEEEecCCccEEEECCCCCCCEEEEEEEE
Confidence            44556667788999999999999998766   666 99999996655678898887776789999999999999999999


Q ss_pred             EecCccCCCccccceEEecCC
Q psy7040         130 LNKEGESEPLETFSSIIARDP  150 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~~~~~p  150 (716)
                      .|..|.+.++......+..+|
T Consensus        95 ~n~~G~s~~S~~~~~~T~~~p  115 (120)
T 1wfu_A           95 TSPSGEYEYSPVVSVATTRES  115 (120)
T ss_dssp             ECSSSCEEECCCEEEECCCCC
T ss_pred             ECCCCCCCCCccEeeEcCCCC
Confidence            999999999988777766554

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.47  E-value=1.1e-12  Score=128.85  Aligned_cols=248  Identities=14%  Similarity=0.129  Sum_probs=149.3

Q ss_pred             CceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEec------------CCCCCCCCe-EEeEEeCCe
Q psy7040         173 GMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD------------KPSPPGGPL-KVSNVHAEG  239 (716)
Q Consensus       173 ~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~------------~p~~p~~~~-~~~~~~~~~  239 (716)
                      ..++.+...+....|.|.++...|+|.|+|.|.|..|... +..+.+..            +|..+..+. ......+..
T Consensus        46 ~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~  124 (312)
T 2y23_A           46 SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQ  124 (312)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSC
T ss_pred             CCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCC
Confidence            4566677667778999999999999999999999998654 55565543            443332211 344556788


Q ss_pred             EEEEEECCCCCCCCccceEEEEEE---eCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceE
Q psy7040         240 VTLDWKVPDDDGGQPIEKYVVDKM---DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI  316 (716)
Q Consensus       240 ~~l~W~~p~~~~~~~~~~y~v~~~---~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~  316 (716)
                      +.|.|....   +.+...+.+...   ......+............+.|.++...+.+.|+|.|.+..+..    .   .
T Consensus       125 v~l~C~~~~---~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~---~  194 (312)
T 2y23_A          125 VRFWMQAEK---LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN----H---S  194 (312)
T ss_dssp             EEEEEEESC---CCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEE----E---E
T ss_pred             EEEEEEEEe---CCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceE----E---E
Confidence            999999641   112222222221   01111222111111234559999999999999999996532110    0   0


Q ss_pred             EecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEE
Q psy7040         317 EAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE  396 (716)
Q Consensus       317 ~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~  396 (716)
                                               .+....       ..  |.            ......    .+...   +     
T Consensus       195 -------------------------~~~~~~-------~~--~~------------~~~~~~----~~~~~---~-----  216 (312)
T 2y23_A          195 -------------------------TVVLVG-------DV--FK------------KLQKEA----EFQRQ---E-----  216 (312)
T ss_dssp             -------------------------EEEECT-------HH--HH------------HHHHHH----HHHHH---H-----
T ss_pred             -------------------------EEEEcc-------hh--hh------------hhcccc----ccccc---c-----
Confidence                                     000000       00  00            000000    00000   0     


Q ss_pred             EEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEeccCCcEEE
Q psy7040         397 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKI  475 (716)
Q Consensus       397 ~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~~~~~~~  475 (716)
                                          .   ....+|.+..  .....+..|..+.|.|.+.+.|.+ .+.|++++..+....++.+
T Consensus       217 --------------------~---~~~~~p~~~~--~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~  271 (312)
T 2y23_A          217 --------------------W---IRKQGPHFVE--YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF  271 (312)
T ss_dssp             --------------------H---HHHHSSEEEE--EEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC--
T ss_pred             --------------------h---hhccCCceee--cceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEE
Confidence                                0   0000222211  112567899999999999999988 9999999999876665554


Q ss_pred             EeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         476 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       476 ~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .  +....|.|.++...|.|.|+|.|.|..|....++.+.+
T Consensus       272 ~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          272 K--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             ----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             E--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            4  44679999999999999999999999999888777653

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.47  E-value=3.1e-12  Score=115.64  Aligned_cols=175  Identities=21%  Similarity=0.329  Sum_probs=119.9

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCC--cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      +..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....  .+.+...+....|.|.++...|.|.|+|.|.|..|....
T Consensus        12 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~   91 (194)
T 2a38_A           12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATS   91 (194)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeE
Confidence            456789999999999999999999999999998876543  566666677889999999999999999999998876554


Q ss_pred             EEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEE
Q psy7040         511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT  590 (716)
Q Consensus       511 s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  590 (716)
                      +..+.+.       ...         +....            ....            ...   .+..|....+.|.+.
T Consensus        92 ~~~l~v~-------~~~---------~~p~~------------~~~~------------~~~---~~~~g~~~~l~C~~~  128 (194)
T 2a38_A           92 TAELLVK-------AET---------APPNF------------VQRL------------QSM---TVRQGSQVRLQVRVT  128 (194)
T ss_dssp             EEEEEEE-------CCC---------EEEEE------------EECC------------CCE---EECTTEEEEEEEEEE
T ss_pred             EEEEEEc-------cCC---------CCCEE------------EeCC------------ccE---EEcCCCEEEEEEEEE
Confidence            4433332       000         00000            0000            000   022333344444432


Q ss_pred             cCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeecc------cceee
Q psy7040         591 NSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDN------VDYFT  664 (716)
Q Consensus       591 n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~------~~~~~  664 (716)
                      .   .            |  +.                                .+.|+++|..+....      .+...
T Consensus       129 g---~------------p--~~--------------------------------~v~W~~~~~~~~~~~~~~~~~~~~~~  159 (194)
T 2a38_A          129 G---I------------P--TP--------------------------------VVKFYRDGAEIQSSLDFQISQEGDLY  159 (194)
T ss_dssp             E---E------------S--CC--------------------------------EEEEEETTEECCCSSSEEEEEETTEE
T ss_pred             E---e------------c--CC--------------------------------eEEEEECCEECCCCCcEEEEEcCCEE
Confidence            1   0            0  00                                567888888776541      11224


Q ss_pred             EEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         665 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       665 ~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      .|.|.++...|.|.|+|.|.|..|....+..|.|+
T Consensus       160 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          160 SLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            79999999999999999999999998888888774

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}

Probab=99.46  E-value=2.8e-12  Score=115.42  Aligned_cols=176  Identities=17%  Similarity=0.191  Sum_probs=121.1

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEE-ecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIP-VGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~-~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +++|.++.+..... ...|+|++|...++ .+ .|.|+|+..  +.|.. |.....+.+.|.+|.++..|.+||+|.++.
T Consensus         2 lp~P~nv~~~s~n~-~~iL~W~pp~~~~~-~v-~Y~V~y~~~--~~w~~~c~~~~~~~c~lt~l~~~~~Y~~rV~A~~~~   76 (201)
T 3lqm_A            2 VPPPENVRMNSVNF-KNILQWESPAFAKG-QL-TFTAQYLSY--RIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEFAD   76 (201)
T ss_dssp             CCCCEEEEEEEETT-EEEEEEECCCCSSS-CC-EEEEEEEET--TEEEEEEEEESSSEEECTTSCSSSCEEEEEEEEETT
T ss_pred             CCCCcccEEEEECC-ceEEEECCCCCCCC-Ce-EEEEEEEEC--CCcccCcCccCCCEEECCCCccCCCEEEEEEEecCC
Confidence            45666676666554 46799999875444 35 499999876  46764 334456899999999999999999999988


Q ss_pred             ccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCcee
Q psy7040         134 GESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSV  213 (716)
Q Consensus       134 g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  213 (716)
                      |.|.++..  .....                                                                 
T Consensus        77 ~~S~~s~~--~f~~~-----------------------------------------------------------------   89 (201)
T 3lqm_A           77 EHSDWVQI--TFSPV-----------------------------------------------------------------   89 (201)
T ss_dssp             EECCCEEE--EECHH-----------------------------------------------------------------
T ss_pred             CcCcceee--eeeec-----------------------------------------------------------------
Confidence            87776531  11000                                                                 


Q ss_pred             EEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCC-CC--------ccceEEEEEEeCCCCCeEEccccCcccceEE
Q psy7040         214 EVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDG-GQ--------PIEKYVVDKMDEATGRWTPAGETEGPVTGLE  284 (716)
Q Consensus       214 ~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~-~~--------~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~  284 (716)
                           ..+.+.+| . +.+ ....+++.|.|.+|...+ +.        .+..|.|.+...+........   .....+.
T Consensus        90 -----~~t~~~PP-~-v~~-~~~~~si~v~w~~P~~~~~~~~~~~~~~~~~l~Y~v~y~~~~~~~~~~~~---~~~~~~~  158 (201)
T 3lqm_A           90 -----DDTIIGPP-G-MQV-EVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQIT---PQYDFEV  158 (201)
T ss_dssp             -----HHSBCCCC-E-EEE-EEETTEEEEEEECCEEECSSCEEEHHHHCTTCEEEEEEEETTCCCCEEEC---CSSSEEE
T ss_pred             -----ccCeeCCC-E-EEE-EEeCCEEEEEEcCCCccCCCcccCHHHhCCceEEEEEEEECCCCcEEEEE---ecCceEE
Confidence                 01234555 3 666 456789999999886433 32        367999987665443322222   3457899


Q ss_pred             EcCCCCCCeEEEEEEEEcC--CCCCCCCccc
Q psy7040         285 VEGLIPNHKYKFRVRAVNK--QGKSEPLTTT  313 (716)
Q Consensus       285 i~~L~p~~~y~~~v~a~n~--~g~~~~~~~~  313 (716)
                      |.+|.|++.|.|+|+|.+.  .|.+..+...
T Consensus       159 l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~  189 (201)
T 3lqm_A          159 LRNLEPWTTYCVQVRGFLPDRNKAGEWSEPV  189 (201)
T ss_dssp             ECSCCTTCEEEEEEEEEETTTTEECCCCCCE
T ss_pred             EecCCCCCcEEEEEEEEeccCCCCCCcCCCE
Confidence            9999999999999999985  4555555543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.44  E-value=1.4e-11  Score=113.04  Aligned_cols=193  Identities=19%  Similarity=0.289  Sum_probs=124.4

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEec-cCCcEEEEe-CCCeEEEEECCCCC-CCceeEEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVN-DDKSTKLKVFDSKR-GDSGIYTLAV  501 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~l~~-~~~~~y~~~a  501 (716)
                      +|.+.. .+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+.. .+....|.|.++.. .|.|.|+|.|
T Consensus         6 pP~~~~-~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            6 PPEIIR-KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCEEEE-CCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCEEEc-CCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            555443 3456789999999999999999999999999999886 455565544 34457999999999 9999999999


Q ss_pred             EcCCCc-eeeEEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCC
Q psy7040         502 KNSWGT-DKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRS  580 (716)
Q Consensus       502 ~n~~g~-~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~  580 (716)
                      .|..|. .+....+.+.      ..+......+.  +.                ...            ...   .+..|
T Consensus        85 ~n~~g~~~~~~~~l~V~------~~~~~~~~~p~--~~----------------~~~------------~~~---~~~~g  125 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIY------EGDKTPAGFPV--IT----------------QGP------------GTR---VIEVG  125 (212)
T ss_dssp             ECSSSCEEEEEEEEEEE------CTTCSCTTCCE--EE----------------ECC------------CCE---EEETT
T ss_pred             EeCCCCeEEeeEEEEEe------cccCCCCCCCe--eE----------------eCC------------Cce---EeecC
Confidence            998886 4444443333      11100000000  00                000            000   01123


Q ss_pred             CeEEEEEEEEcCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeeccc
Q psy7040         581 DTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNV  660 (716)
Q Consensus       581 ~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~  660 (716)
                      ....+.|.+..   .            |  +.                                .+.|++++..+.....
T Consensus       126 ~~v~l~C~~~g---~------------p--~p--------------------------------~i~W~~~~~~~~~~~~  156 (212)
T 2yd1_A          126 HTVLMTCKAIG---N------------P--TP--------------------------------NIYWIKNQTKVDMSNP  156 (212)
T ss_dssp             CCEEECCEEEC---S------------S--CC--------------------------------EEEEEETTEECCTTST
T ss_pred             CeEEEEEEecc---C------------C--CC--------------------------------eEEEEECCeEcccCCC
Confidence            33344444321   0            0  00                                5789999988765311


Q ss_pred             ---ceeeEEEEccCCCCCcEEEEEEEEcCCCCceee-EEEEEecCCCCCC
Q psy7040         661 ---DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF-IEVVVTDKPSAPE  706 (716)
Q Consensus       661 ---~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s-~~l~v~~~p~~p~  706 (716)
                         .....|.|.++...|.|.|+|.|.|..|..... +.|.|...+..|.
T Consensus       157 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~~~  206 (212)
T 2yd1_A          157 RYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTK  206 (212)
T ss_dssp             TEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C--
T ss_pred             eEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecccccc
Confidence               122589999999999999999999999998765 8999998877664

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.44  E-value=1.1e-12  Score=105.58  Aligned_cols=99  Identities=26%  Similarity=0.400  Sum_probs=85.5

Q ss_pred             CCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       321 ~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      +..+|.+|.++++...+.+++.|+|.+|..+++.+|.+|.|+++..+...|...........++++.+|.+++.|.|+|+
T Consensus         5 p~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~   84 (111)
T 1x5y_A            5 SSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVV   84 (111)
T ss_dssp             CCSCCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEE
T ss_pred             CCCCCcCCCCCEEEeccCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEccccCCcccEEEECCCCCCCEEEEEEE
Confidence            44778999999999999999999999988777777999999999887778887665556788999999999999999999


Q ss_pred             EEeCCCCCCCCCCCCceEe
Q psy7040         401 AVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~~~  419 (716)
                      |.|..|.|.++.....++.
T Consensus        85 A~n~~G~s~~S~~~~~v~~  103 (111)
T 1x5y_A           85 GVNIAGRSEPATLLQPVTI  103 (111)
T ss_dssp             EEETTEECCCCCCSSCBCC
T ss_pred             EEcCCcCCCCccCCCCEEe
Confidence            9999999999887655544

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.43  E-value=7.4e-13  Score=130.45  Aligned_cols=138  Identities=18%  Similarity=0.291  Sum_probs=105.5

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceE--------------eecCCCCCcccccccccEEEecCCeEE
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI--------------ARAKKVSPYINRDQLSDIKVRAGSNFE  445 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~--------------~~~~~~~P~~~~~~~~~~~~~~g~~~~  445 (716)
                      ....+.|.++...+.+.|+|.|.|..|....+.......              .......|.+....+....+..|..+.
T Consensus       162 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~  241 (317)
T 2y25_A          162 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN  241 (317)
T ss_dssp             SEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBC
T ss_pred             CEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEE
Confidence            334588999999999999999999777543221110000              001112344444445567899999999


Q ss_pred             EEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         446 FDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       446 ~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      |.|.+.+.|.+.+.|++++..+....++.+... +....|.|.++...|.|.|+|.|.|..|....+..+.|.
T Consensus       242 l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  314 (317)
T 2y25_A          242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  314 (317)
T ss_dssp             EEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            999999999999999999999988888877666 667799999999999999999999999998887777664

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=99.43  E-value=1.5e-12  Score=120.49  Aligned_cols=182  Identities=16%  Similarity=0.218  Sum_probs=119.3

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCc-cceEEEEEEeCCC----CCeEEcccc---CcccceEEEcCCCCCC
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQP-IEKYVVDKMDEAT----GRWTPAGET---EGPVTGLEVEGLIPNH  292 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~-~~~y~v~~~~~~~----~~~~~~~~~---~~~~~~~~i~~L~p~~  292 (716)
                      .+|..|.+ +.+.......++++|++ ..+++.+ ...|.+.|.....    ..+..|...   ....+.+...+|.+++
T Consensus        28 ~pP~~P~~-l~C~~~~~~~~~c~W~p-~~~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~~~  105 (236)
T 1axi_B           28 NSSGEPKF-TKCRSPERETFSCHWTD-EVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAI  105 (236)
T ss_dssp             ----CCCE-EEEEBSSSSCEEEEECC-C--------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCSSS
T ss_pred             CCCCCCcC-CeEEeCCCCEEEEEecC-CCCCCCCCCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCcccc
Confidence            47888887 76776778899999995 4434433 2578888765433    246666532   1234567777899999


Q ss_pred             eEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEE--eeeC----CeEEEEecCCCCC---CCccceEEEEEE
Q psy7040         293 KYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK--DFDT----DFVELAWTPPEQN---GGSPIVGYIIEK  363 (716)
Q Consensus       293 ~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~--~~~~----~~i~l~W~~p~~~---~~~~i~~y~v~~  363 (716)
                      .|.|+|.| | .+.+.   .. .+.. .....|.+|.++.+.  ..+.    ..+.|+|.+|...   +|..+..|+|+|
T Consensus       106 ~Y~~~V~a-N-~~~s~---~~-~~~~-~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry  178 (236)
T 1axi_B          106 PYCIKLTS-N-GGTVD---EK-CFSV-DEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQY  178 (236)
T ss_dssp             EEEEEEEE-T-TEEEE---EE-EEEG-GGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEE
T ss_pred             eEEEEEEE-C-CccCC---Ce-Eeec-ccccccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEE
Confidence            99999999 8 33222   11 1212 223568889888543  3322    3499999997642   232578999999


Q ss_pred             eecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC--CCCCCCC
Q psy7040         364 KEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG--PGEPSDP  413 (716)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g--~~~~s~~  413 (716)
                      +..+...|.....  ....++.|.+|.+++.|.|+|+|.+..|  .|++|..
T Consensus       179 ~~~~~~~w~~~~~--~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~  228 (236)
T 1axi_B          179 KEVNETKWKMMDP--ILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEV  228 (236)
T ss_dssp             EETTCSSCEECCC--BSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCC
T ss_pred             EECCCCceEEEec--cCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCC
Confidence            9887777876432  3468899999999999999999999887  5555544

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.43  E-value=2.6e-12  Score=105.16  Aligned_cols=111  Identities=26%  Similarity=0.467  Sum_probs=88.0

Q ss_pred             CCCCCCcccceEEecCCCCCCCCCCCcEEE-eeeCCeEEEEecCCCCCCCccceEEEEEEeecCC-CceEEEeeecCCCC
Q psy7040         305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIK-DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS-PIWEKCAQTEGDTP  382 (716)
Q Consensus       305 g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~-~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~  382 (716)
                      |.+.++....   +.+....|.+|.++.+. ..+.+++.|+|.+|..+++.+|.+|.|+++.... ..|.....  ....
T Consensus         1 G~s~~S~~~~---~~t~~~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~   75 (120)
T 2crm_A            1 GSSGSSGVVE---FTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS--GATR   75 (120)
T ss_dssp             CCCTTCSCCS---CCSCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEEC--SSCS
T ss_pred             CCCCCcCCEE---EEeCCCCCCCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCEEEEe--cccc
Confidence            3444555442   33455778899998887 7889999999999887767789999999998765 47876643  4578


Q ss_pred             eEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEee
Q psy7040         383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR  420 (716)
Q Consensus       383 ~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~  420 (716)
                      ++.+.+|.+++.|.|+|+|.|..|.|.++......+..
T Consensus        76 ~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~  113 (120)
T 2crm_A           76 EHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPA  113 (120)
T ss_dssp             EEEECSCCTTSCEEEEEEEEETTEECCCCCCCCCCCCC
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCccCCCcccEEEEcCC
Confidence            89999999999999999999999999998876655543

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.43  E-value=7.7e-13  Score=106.34  Aligned_cols=95  Identities=31%  Similarity=0.391  Sum_probs=80.5

Q ss_pred             CCCCCceE-EEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          56 DPEGPLEV-SNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        56 ~p~~~l~~-~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      .||.++.+ ..++.+++.|+|++|..+++.+|.+|.|+++..+...|..+.....+.++|.+|.+++.|.|+|+|.|..|
T Consensus        10 ~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G   89 (110)
T 2crz_A           10 GPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMG   89 (110)
T ss_dssp             CCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEEESCSEEEEESCCTTCEEEECCEEECSSC
T ss_pred             CCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceEEEEeCCcEEEEECCcCCCCEEEEEEEEEcCCc
Confidence            45555666 46778899999998877778889999999998877888887776779999999999999999999999999


Q ss_pred             cCCCccccceEEecCC
Q psy7040         135 ESEPLETFSSIIARDP  150 (716)
Q Consensus       135 ~~~~s~~~~~~~~~~p  150 (716)
                      .+.+|......+...+
T Consensus        90 ~g~~S~~~~~~T~~~~  105 (110)
T 2crz_A           90 FGPFSEKCDITTAPGS  105 (110)
T ss_dssp             BCCCCCCEEEECCCSC
T ss_pred             cCCCCCccccccCCCC
Confidence            9999987777665444

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.6e-12  Score=104.47  Aligned_cols=92  Identities=30%  Similarity=0.515  Sum_probs=78.5

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEeccc--CCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~--~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      ||..+.+..++.+++.|+|++|..+++.++.+|.|+|+..+...|..+...  ..+.++|.+|.+++.|.|+|+|.|..|
T Consensus        10 ~P~~l~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G   89 (110)
T 2yuw_A           10 PPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAG   89 (110)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCccEEEeccCCeEEEEECCCCCCCCCCccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEEEEcCCc
Confidence            344477788999999999999987777889999999998888889887543  468999999999999999999999999


Q ss_pred             cCCCccccceEEec
Q psy7040         135 ESEPLETFSSIIAR  148 (716)
Q Consensus       135 ~~~~s~~~~~~~~~  148 (716)
                      .+.++.....++..
T Consensus        90 ~s~~S~~~~~v~~~  103 (110)
T 2yuw_A           90 ASEPKYYSQPILVK  103 (110)
T ss_dssp             ECCCEECSSCEECC
T ss_pred             CCCCcCCCCCEEec
Confidence            99998877666553

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.42  E-value=1.5e-12  Score=126.52  Aligned_cols=225  Identities=12%  Similarity=0.126  Sum_probs=138.7

Q ss_pred             ccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceE
Q psy7040         279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVG  358 (716)
Q Consensus       279 ~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~  358 (716)
                      ....+.|.++...+.+.|+|.|.|..|....  ....+.+..+......|....+  ..+..+.|.|.....    +...
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~--~~~~l~v~~~~~~~~~~~~~~~--~~g~~v~l~C~~~~~----p~~~  131 (291)
T 1qz1_A           60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSE--ATVNVKIFQKLMFKNAPTPQEF--KEGEDAVIVCDVVSS----LPPT  131 (291)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECTTSCEEE--EEEEEEEECCSEEEECCSSEEE--ETTSCEEECCEEECS----SCCE
T ss_pred             CeEEEEEecCCCCCCEEEEEEEEcCCCCeeE--EEEEEEeeccccccCCCCcccc--cCCCeEEEEEEeccC----CCCE
Confidence            3578999999999999999999998764211  1111222211111122333322  345567777765221    1112


Q ss_pred             EEEEEeecCCCc-e-EEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCccccc-cccc
Q psy7040         359 YIIEKKEKYSPI-W-EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD-QLSD  435 (716)
Q Consensus       359 y~v~~~~~~~~~-~-~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~-~~~~  435 (716)
                        +.|...+... . ............+.|.++...+.+.|+|.|.|..+....+.. .....   ..+|.+... ....
T Consensus       132 --v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~-~~l~v---~~~p~~~~~~~~~~  205 (291)
T 1qz1_A          132 --IIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD-IQVIV---NVPPTVQARQSIVN  205 (291)
T ss_dssp             --EEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEE-EEEEE---EEEEEEEESCSEEE
T ss_pred             --EEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEE-EEEEE---ecCCcccccccccc
Confidence              3333222110 0 000001123457899999999999999999987542211111 11111   123443321 2335


Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCc--EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  513 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~  513 (716)
                      ..+..|..+.|.|.+.+.|.+.+.|++++..+.....  .++........|.|.++...|.|.|+|.|.|..|....++.
T Consensus       206 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  285 (291)
T 1qz1_A          206 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH  285 (291)
T ss_dssp             EETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEE
Confidence            5677899999999999999999999999998865531  22333344568999999999999999999999999888877


Q ss_pred             EEEE
Q psy7040         514 VTVL  517 (716)
Q Consensus       514 ~~v~  517 (716)
                      +.|.
T Consensus       286 l~V~  289 (291)
T 1qz1_A          286 LKVF  289 (291)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7664

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.42  E-value=5.5e-12  Score=121.45  Aligned_cols=218  Identities=14%  Similarity=0.132  Sum_probs=129.9

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEec-------------CCCCCCCC-eEEeEEeC-CeEEEEEECC
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD-------------KPSPPGGP-LKVSNVHA-EGVTLDWKVP  247 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~-------------~p~~p~~~-~~~~~~~~-~~~~l~W~~p  247 (716)
                      .+.+|.|.++...|+|.|+|.|   .|.....+.+.|..             ++.||..+ +....... ..++++|.+.
T Consensus        49 ~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~v~~~~~~~~~t~i~~~~~~pp~~~~lsC~~~~~~~~~~C~W~pg  125 (306)
T 3d85_D           49 SGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTT  125 (306)
T ss_dssp             ESSEEEEEECSGGGCEEEEEEE---TTEEEEEEEEEEEEEETTEECCCSSCCCC---CCCCCEEEBSSSSSEEEEEEEES
T ss_pred             CCCEEEEEecCcCCCceEEEee---CCcccceEEEEEEeccCCcceeeeecccCCCCCCCcceEEcCCcccCcEEEecCC
Confidence            3679999999999999999999   36655555555532             23333321 44443333 3899999963


Q ss_pred             CCCCCCccceEEEEEEeCCCCCeEEccccCcccce-----------E--EEcCCCCC----CeEEEEEEEEcCCCCCCCC
Q psy7040         248 DDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG-----------L--EVEGLIPN----HKYKFRVRAVNKQGKSEPL  310 (716)
Q Consensus       248 ~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~-----------~--~i~~L~p~----~~y~~~v~a~n~~g~~~~~  310 (716)
                      .. .+ ....|...+. .....|..+.........           +  .+..+.|.    ..|.|+|.|.|..|.....
T Consensus       126 ~~-~~-l~~~~~~~r~-~~~~~~~~C~~~~~~~~~c~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~  202 (306)
T 3d85_D          126 IS-TD-LTFSVKSSRG-SSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYT  202 (306)
T ss_dssp             CC-SS-EEEEEEEEEC-SSSCEEEEECCCEEEEEEEC--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEE
T ss_pred             CC-Cc-eeEEEEEEec-CCCCcceECCCCCCCccceeecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccc
Confidence            32 22 2234544322 222345544331111111           1  23455555    4899999999988854332


Q ss_pred             cccceEEecCCCCCCCCCCCcEEEeeeC-CeEEEEecCCCCCCC---ccceEEEEEEeecCCCceEEEeeecCCCCeEEe
Q psy7040         311 TTTASIEAKNPFNQPGKPGTPEIKDFDT-DFVELAWTPPEQNGG---SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKV  386 (716)
Q Consensus       311 ~~~~~~~~~~~~~~p~~p~~~~~~~~~~-~~i~l~W~~p~~~~~---~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i  386 (716)
                      .   .+.. .....|.+|.++.+..... ..+.|+|.+|...+.   .....|+|+|+..+...|....  ....+++.|
T Consensus       203 ~---~f~~-~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~~~~~~~--~~~~ts~~l  276 (306)
T 3d85_D          203 S---SFFI-RDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRV--FTDKTSATV  276 (306)
T ss_dssp             E---EECH-HHHBCCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEE--EESSSEEEE
T ss_pred             e---EEEe-hhcEecCCCceEEEEEecCCCcEEEEEcCCCCCcCCCceeeEEEEEEEEECCCCccEEEe--eccccEEEE
Confidence            1   1111 1225688899999887544 789999999754322   1236899999987755554332  234566766


Q ss_pred             cCCCCCCeEEEEEEEEeCCCCCCCCCCCC
Q psy7040         387 LDLIEGNQYEFRVLAVNKGGPGEPSDPTA  415 (716)
Q Consensus       387 ~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~  415 (716)
                      .   +++.|.|+|+|.+..|.|.+|+.+.
T Consensus       277 ~---~~~~Y~vqVRa~~~~~~G~WSeWS~  302 (306)
T 3d85_D          277 I---CRKNASISVRAQDRYYSSSWSEWAS  302 (306)
T ss_dssp             C---CCSSCEEEEEEEESSSCCCCCCCEE
T ss_pred             e---CCCeEEEEEEeccCCCCCCCCCCCC
Confidence            4   5899999999999989888888753

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.42  E-value=1.9e-12  Score=134.07  Aligned_cols=286  Identities=15%  Similarity=0.098  Sum_probs=169.1

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCC-CCCCCCCceEee-cCCCCCcccccccccEEEecCCeEEEEEEEecc-CCC-
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPG-EPSDPTAPHIAR-AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-  456 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~-~~s~~~~~~~~~-~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~-p~~-  456 (716)
                      ..++.|.++...+...|+|.|.|..+.. ..+... ...+. ....+|.+....+. ..+..|..+.|.|.+.+. |.+ 
T Consensus        78 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~-~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~  155 (444)
T 1igt_B           78 TLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGT-TVTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPV  155 (444)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCE-EEEECSCCCBCCEEEEECCC-SSCCCSSCEEEEEEEEEEBSSCC
T ss_pred             eEEEEECCCCHHHCEEEEEEEecCCcccccccCcE-EEEecCCCCCCCceeEeccc-ccCCCCCcEEEEEEEcceeCCCc
Confidence            4578899999999999999999875421 011111 12222 22234544321111 123689999999999875 766 


Q ss_pred             eEEEEeCCeEecc--C------CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE------------
Q psy7040         457 TKEWLCNDITIIS--K------DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV------------  516 (716)
Q Consensus       457 ~~~W~~~~~~~~~--~------~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v------------  516 (716)
                      .+.|++++..+..  .      ..+..     ...|.|.+....| |.|+|.|.|..|.......+.+            
T Consensus       156 ~v~W~~~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~  229 (444)
T 1igt_B          156 TLTWNSGSLSSGVHTFPAVLQSDLYTL-----SSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCK  229 (444)
T ss_dssp             EEEEGGGTBCTTEEECCCEEETTEEEE-----EEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCS
T ss_pred             EEEEecCCCCCCeEecCccccCCcEEE-----EEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccc
Confidence            9999998865310  0      11111     2468899999888 9999999999998655444422            


Q ss_pred             ----E---EEEEEEeCCC-----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecc------c----cceeEEEE
Q psy7040         517 ----L---GCSLKWNPPE-----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN------V----DYFTKITI  574 (716)
Q Consensus       517 ----~---~v~l~W~~p~-----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~------~----~~~~~~~i  574 (716)
                          .   ...+...+|.     ..+......|.+...+...+.+.+.|++.+........      .    .....+.|
T Consensus       230 ~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I  309 (444)
T 1igt_B          230 CPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPI  309 (444)
T ss_dssp             CCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEEC
T ss_pred             cCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEE
Confidence                0   2233233432     22334455666654320011234999998754321100      0    11246888


Q ss_pred             cCCCCCCeEEEEEEEEcCCCCCccceeeec-cCCCCCCcccee-------eccceeEEEEEEeeEEEEeeeeccCcee--
Q psy7040         575 RPLQRSDTAQYTVTATNSQGKDQVFIEVVV-TDKPSAPEGPIQ-------WLLTLTDVTWEISNYLQELHSSLMPISL--  644 (716)
Q Consensus       575 ~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v-~~~p~~~~~~~~-------~~~~~v~l~w~i~~y~v~~~~~~~~~~~--  644 (716)
                      .+++..+.+.|+|.|.|..|.......+.. ......|. +..       +....+.              |.|.+.|  
T Consensus       310 ~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~-v~~~~~~~~~~~~~~~~--------------L~C~~~g~~  374 (444)
T 1igt_B          310 QHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQ-VYVLPPPEEEMTKKQVT--------------LTCMVTDFM  374 (444)
T ss_dssp             CHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCE-EEEECCCGGGTTSSEEE--------------EEEEEEEEB
T ss_pred             cHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCE-EEEeCCChHHccCCeEE--------------EEEEEEeee
Confidence            888889999999999999886643333321 12222232 221       1222354              4444444  


Q ss_pred             ----eEEEEeCCeEeeecc--------cc---eeeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         645 ----ESQYLMNDKRVTIDN--------VD---YFTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       645 ----~~~W~~~~~~~~~~~--------~~---~~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                          .+.|+++|..+....        .+   ....|.|.....+|.|.|+|.|.|..-.
T Consensus       375 P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l~  434 (444)
T 1igt_B          375 PEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLH  434 (444)
T ss_dssp             SSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTSG
T ss_pred             CCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCcC
Confidence                689999998874320        11   1134566666667799999999997643

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=8.7e-13  Score=108.96  Aligned_cols=115  Identities=20%  Similarity=0.284  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCCCCCcccceEEecCCCCCCC-CCCCcEEEeeeCCeEEEEecCCCCC-CCccceEEEEEEeecCCCceEEE
Q psy7040         297 RVRAVNKQGKSEPLTTTASIEAKNPFNQPG-KPGTPEIKDFDTDFVELAWTPPEQN-GGSPIVGYIIEKKEKYSPIWEKC  374 (716)
Q Consensus       297 ~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~p~~~-~~~~i~~y~v~~~~~~~~~~~~~  374 (716)
                      +|.|.|..|.+..+...   .+.+....|. +|.++.+.....+++.|+|.+|..+ .++.+.+|.|+|+..+...|...
T Consensus         3 ~V~A~n~~G~g~~s~~~---~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~   79 (124)
T 2ed9_A            3 SGSSGNRYGPGVSTDDI---TVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMET   79 (124)
T ss_dssp             SCCCCCCCCCCCCCCCC---CCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCCEEE
T ss_pred             eEEEEeCCccCCCCCCE---EEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcceEE
Confidence            57889999988766554   3333445666 7889999999999999999998653 45579999999998776655443


Q ss_pred             eeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCc
Q psy7040         375 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP  416 (716)
Q Consensus       375 ~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~  416 (716)
                        ......++.|.+|.+++.|.|+|+|.|..|.|.+|.....
T Consensus        80 --~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~  119 (124)
T 2ed9_A           80 --LEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTA  119 (124)
T ss_dssp             --ECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEE
T ss_pred             --ecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEE
Confidence              4567889999999999999999999999999988876443

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.42  E-value=1.2e-12  Score=105.29  Aligned_cols=102  Identities=28%  Similarity=0.380  Sum_probs=84.2

Q ss_pred             CCCCCCCCCcEE-EeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         322 FNQPGKPGTPEI-KDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       322 ~~~p~~p~~~~~-~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      ...|.+|.++.+ .....+++.|+|.+|..+++.+|.+|.|+++......|....  ......+++.+|.+++.|.|+|+
T Consensus         6 ~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~v~~L~p~t~Y~frV~   83 (110)
T 2crz_A            6 SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVY--QGSEVECTVSSLLPGKTYSFRLR   83 (110)
T ss_dssp             CCCCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEE--EESCSEEEEESCCTTCEEEECCE
T ss_pred             CCCCCCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceEEEE--eCCcEEEEECCcCCCCEEEEEEE
Confidence            367889999998 467788999999988777778899999999987767787665  34678999999999999999999


Q ss_pred             EEeCCCCCCCCCCCCceEeecCCCC
Q psy7040         401 AVNKGGPGEPSDPTAPHIARAKKVS  425 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~~~~~~~~~  425 (716)
                      |.|..|.|.+|......+...++.+
T Consensus        84 A~n~~G~g~~S~~~~~~T~~~~P~~  108 (110)
T 2crz_A           84 AANKMGFGPFSEKCDITTAPGSGPS  108 (110)
T ss_dssp             EECSSCBCCCCCCEEEECCCSCCCC
T ss_pred             EEcCCccCCCCCccccccCCCCCCC
Confidence            9999999999887666555444333

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.9e-12  Score=104.13  Aligned_cols=98  Identities=22%  Similarity=0.356  Sum_probs=85.3

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .+|.+|.++.+...+.+++.|+|.+|..+++.++.+|.|+++..+...|............+++.+|.+++.|.|+|+|.
T Consensus         6 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   85 (110)
T 2yuw_A            6 SGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAV   85 (110)
T ss_dssp             CCSCCCEEEEEEEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCCccEEEeccCCeEEEEECCCCCCCCCCccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEEEE
Confidence            57889999999999999999999998877777899999999988777888765555678899999999999999999999


Q ss_pred             eCCCCCCCCCCCCceEee
Q psy7040         403 NKGGPGEPSDPTAPHIAR  420 (716)
Q Consensus       403 n~~g~~~~s~~~~~~~~~  420 (716)
                      |..|.|.++.....++..
T Consensus        86 n~~G~s~~S~~~~~v~~~  103 (110)
T 2yuw_A           86 NAAGASEPKYYSQPILVK  103 (110)
T ss_dssp             ETTEECCCEECSSCEECC
T ss_pred             cCCcCCCCcCCCCCEEec
Confidence            999999998877666543

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.41  E-value=9.9e-12  Score=120.49  Aligned_cols=227  Identities=15%  Similarity=0.081  Sum_probs=140.0

Q ss_pred             cCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCC-CCCeEEeEEeCCeEEEEEECCCCCCCCccceEE
Q psy7040         181 LDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP-GGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV  259 (716)
Q Consensus       181 ~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p-~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~  259 (716)
                      ......|.|.+++..|+|.|+|.|.|..|..+..+.|.|..+|.+. ..+.......+..+.|.|.....   .+...+.
T Consensus        47 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~---~~~~~v~  123 (289)
T 3ejj_X           47 ESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDP---ALKDSVS  123 (289)
T ss_dssp             CSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCG---GGGGSEE
T ss_pred             cCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCC---CcceEEE
Confidence            3456899999999999999999999999998999999998877541 11134455678899999996421   1112244


Q ss_pred             EEEEeC---CCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEee
Q psy7040         260 VDKMDE---ATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF  336 (716)
Q Consensus       260 v~~~~~---~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~  336 (716)
                      +.....   ........    .....+.|.++...+.+.|+|.|.+..+.. .+..   +             .+.+.. 
T Consensus       124 W~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~-~~~~---~-------------~l~V~~-  181 (289)
T 3ejj_X          124 LMREGGRQVLRKTVYFF----SPWRGFIIRKAKVLDSNTYVCKTMVNGRES-TSTG---I-------------WLKVNR-  181 (289)
T ss_dssp             EEEGGGEECCTTCCEEE----ETTTEEEESSCCGGGCEEEEEEEEETTEEE-ECCC---E-------------EEEEES-
T ss_pred             EEecCCeecCCCccEEE----CCCCCEEEeecccccCEEEEEEEEeCCCcc-cccc---E-------------EEEEEE-
Confidence            332111   11111111    123568999999999999999998421110 0000   0             000000 


Q ss_pred             eCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCc
Q psy7040         337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP  416 (716)
Q Consensus       337 ~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~  416 (716)
                               ..                                                                     
T Consensus       182 ---------~~---------------------------------------------------------------------  183 (289)
T 3ejj_X          182 ---------VH---------------------------------------------------------------------  183 (289)
T ss_dssp             ---------SC---------------------------------------------------------------------
T ss_pred             ---------CC---------------------------------------------------------------------
Confidence                     00                                                                     


Q ss_pred             eEeecCCCCCcccccccccEEEecCCeEEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeC--CCeEEEEECCCCCCC
Q psy7040         417 HIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVND--DKSTKLKVFDSKRGD  493 (716)
Q Consensus       417 ~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~l~~~~  493 (716)
                            ..+|.+.. .+....+..|..+.|.|.+.+ .|.+.+.|++++..+...........  .....|.|.++...|
T Consensus       184 ------~~~p~i~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  256 (289)
T 3ejj_X          184 ------PEPPQIKL-EPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQD  256 (289)
T ss_dssp             ------CCCCEEEE-ESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSS
T ss_pred             ------CCCCeEEe-cCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccC
Confidence                  00111100 011233457888899999988 78999999999988754332221111  125589999999999


Q ss_pred             ceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         494 SGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       494 ~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .|.|+|.|.|..|....++.+.+.
T Consensus       257 ~G~Y~C~a~N~~G~~~~s~~L~~~  280 (289)
T 3ejj_X          257 AGIYSCVASNDVGTRTATMNFQVV  280 (289)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEECC
T ss_pred             CEEEEEEEEcCCCCccccEEEEEE
Confidence            999999999999999888776553

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.41  E-value=3.6e-12  Score=119.77  Aligned_cols=189  Identities=21%  Similarity=0.264  Sum_probs=116.5

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcE-EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF-KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      ...+.+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ..........|.|.++...|.|.|+|.|.|..|.....
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~  101 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT  101 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEE
Confidence            34678999999999999999999999999999887644322 11222334589999999999999999999988766555


Q ss_pred             EEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEc
Q psy7040         512 AKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN  591 (716)
Q Consensus       512 ~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n  591 (716)
                      ..+.+.     -..+.    .++                  ......           ...   .+..|..-.+.|.+..
T Consensus       102 ~~l~V~-----~~~~~----~~~------------------~~~~~~-----------~~~---~~~~g~~v~L~C~~~~  140 (241)
T 3grw_A          102 YTLDVL-----ERSPH----RPI------------------LQAGLP-----------ANQ---TAVLGSDVEFHCKVYS  140 (241)
T ss_dssp             EEEEEE-----CCCCC----CCE------------------EEECTT-----------CSE---ECCTTCCEEEEEEEEC
T ss_pred             EEEEEe-----ccCCC----Cce------------------eecCCC-----------ccc---eecCCCEEEEEEEEec
Confidence            444433     00110    000                  000000           000   1334556666776632


Q ss_pred             CCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEe----CCeEeeec---------
Q psy7040         592 SQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLM----NDKRVTID---------  658 (716)
Q Consensus       592 ~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~----~~~~~~~~---------  658 (716)
                      .     +..                                            .+.|++    +|..+...         
T Consensus       141 ~-----p~p--------------------------------------------~v~W~~~~~~~g~~~~~~~~~~~~~~~  171 (241)
T 3grw_A          141 D-----AQP--------------------------------------------HIQWLKHVEVNGSKVGPDGTPYVTVLK  171 (241)
T ss_dssp             S-----SCC--------------------------------------------EEEEEEECCSSSCSSCTTTCCCEEEEE
T ss_pred             C-----CCC--------------------------------------------EEEEEEcccCCCcccCCCCceeeeeee
Confidence            0     000                                            345555    44443322         


Q ss_pred             -----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCeEE
Q psy7040         659 -----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQI  711 (716)
Q Consensus       659 -----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~p~~~  711 (716)
                           .......|.|.++...|.|.|+|.|.|..|....+..|.|..+|.+|..++..
T Consensus       172 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~ve~  229 (241)
T 3grw_A          172 SWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEA  229 (241)
T ss_dssp             EEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-------------
T ss_pred             EeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCccceec
Confidence                 11234679999999999999999999999999999999999999999777654

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.40  E-value=2.9e-12  Score=104.55  Aligned_cols=110  Identities=21%  Similarity=0.279  Sum_probs=86.1

Q ss_pred             CCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC-CceEEEeeecCCCCeE
Q psy7040         306 KSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS-PIWEKCAQTEGDTPKG  384 (716)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~~  384 (716)
                      .+..+..   +.+.+....|.+|.++.+...+.+++.|+|.+|. +++++|.+|.|+++.... ..|.....  .....+
T Consensus         2 ~s~~S~~---~~~~t~~~~P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~   75 (118)
T 1x3d_A            2 SSGSSGA---EIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYM--GSQKQF   75 (118)
T ss_dssp             CCCCCCC---CCCCCCCSCCCCCCCCEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEE--ESCSEE
T ss_pred             CCCCCcC---EEEEcCCCCCcCCCCcEEeccCCCEEEEEECCCC-CCCCcceEEEEEEecCCCCCCeEEeec--cCCcEE
Confidence            3444444   3344455788999999999999999999999987 456689999999987764 56765543  345889


Q ss_pred             EecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeec
Q psy7040         385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       385 ~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~  421 (716)
                      .+.+|.+++.|.|+|+|.|..|.|.++......+...
T Consensus        76 ~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~  112 (118)
T 1x3d_A           76 KITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC  112 (118)
T ss_dssp             EEESCCTTCEEEEECCEEESSCBCCCCCCEEEECSCC
T ss_pred             EeCCCCCCCEEEEEEEEEECCCCCCCccCEEEEcCCC
Confidence            9999999999999999999999999888765554433

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.40  E-value=3.2e-13  Score=107.85  Aligned_cols=96  Identities=32%  Similarity=0.511  Sum_probs=81.5

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .+|.+|..+.+..++.+++.|+|.+|..++|.+|.+|.|+++..+...|............+++.+|.+++.|.|+|+|.
T Consensus         9 ~~p~~P~~P~v~~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   88 (112)
T 1bpv_A            9 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAK   88 (112)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEE
T ss_pred             CCCCCCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeecccCccCEEEECCCCCCCEEEEEEEEE
Confidence            45778888889999999999999998888888899999999988777888765545667899999999999999999999


Q ss_pred             eCCCC-CCCCCCCCceE
Q psy7040         403 NKGGP-GEPSDPTAPHI  418 (716)
Q Consensus       403 n~~g~-~~~s~~~~~~~  418 (716)
                      |..|. |.+|.....++
T Consensus        89 N~~G~~s~~S~~~~~~t  105 (112)
T 1bpv_A           89 NAAGAISPPSEPSDAIT  105 (112)
T ss_dssp             CTTSCEEEEEEEEEEEC
T ss_pred             ECCCCCCCCCCCCCCEE
Confidence            99996 88776544443

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.40  E-value=2.9e-11  Score=117.21  Aligned_cols=254  Identities=12%  Similarity=0.037  Sum_probs=153.8

Q ss_pred             EEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCC
Q psy7040         231 KVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPL  310 (716)
Q Consensus       231 ~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~  310 (716)
                      .+....++.++|.|...    +      .+.|...+...+...    .....+.|.++...+.+.|+|.|.|  |.    
T Consensus        21 ~~~v~~G~~v~l~C~~~----~------~i~W~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~n--g~----   80 (290)
T 2o26_X           21 ELIVEAGDTLSLTCIDP----D------FVRWTFKTYFNEMVE----NKKNEWIQEKAEATRTGTYTCSNSN--GL----   80 (290)
T ss_dssp             EEEEETTSCEEEEEECT----T------EEEEEEECSSSCEEE----ECSSEEEETTCCGGGCEEEEEEESS--SC----
T ss_pred             eEEEcCCCcEEEEECCC----C------cEEEecCCcceeeec----CCCceEEEeccCHHhCeEEEEEeeC--Cc----
Confidence            45566789999999952    2      233322222221111    1238999999999999999999998  43    


Q ss_pred             cccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEE-eecCCCc--eEEEeeecCCCCeEEec
Q psy7040         311 TTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEK-KEKYSPI--WEKCAQTEGDTPKGKVL  387 (716)
Q Consensus       311 ~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~-~~~~~~~--~~~~~~~~~~~~~~~i~  387 (716)
                      .....+.+..+...-..+.++.+  ..+..+.|.|....     +- .-.+.| +..+..-  .....  ......+.|.
T Consensus        81 ~~~~~l~V~~~~~~~~~~~~~~~--~~g~~v~l~C~~~~-----p~-~~~v~W~~~~g~~l~~~~~~~--~~~~~~L~i~  150 (290)
T 2o26_X           81 TSSIYVFVRDPAKLFLVGLPLFG--KEDSDALVRCPLTD-----PQ-VSQYSLIECDGKSLPTDLTFV--PNPKAGITIK  150 (290)
T ss_dssp             EEEEEEEEECSSCCBCCCCCEEE--ETTSCEEECCCBSC-----CS-CEEEEEEETTSCCCCTTCEEE--EETTTEEEEE
T ss_pred             cEEEEEEEeCCCcccccccceEE--ecCCeEEEeCcCCC-----CC-CceEEEEeCCCcCCCCCCcee--eCCCCCEEEe
Confidence            11112333221111122333333  35666888887631     11 122333 2222100  00111  1123578999


Q ss_pred             CCCCCCeE-EEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCe-EEEEeCCe
Q psy7040         388 DLIEGNQY-EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDI  465 (716)
Q Consensus       388 ~l~~~~~Y-~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~-~~W~~~~~  465 (716)
                      ++...+.+ .|+|.|.|..|.. .+.............+|.+... +....+..|+.+.|.|.+.+.|.+. +.|++++.
T Consensus       151 ~v~~~d~G~~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~~P~i~~~-~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~  228 (290)
T 2o26_X          151 NVKRAYHRLCVRCAAQRDGTWL-HSDKFTLKVREAIKAIPVVSVP-ETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNP  228 (290)
T ss_dssp             SCCGGGTTCEEEEEEEETTEEE-ECCCEEEEEECCCCSCCEEECS-CSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESS
T ss_pred             cccHHHCCCEEEEEEEECCceE-EeEEEEEEEEeCCCCCCccccC-CCcceEecCCcEEEEEEEecCCcceeEEEecCCC
Confidence            99999999 9999999974432 1211112221123346665432 3344788999999999999999996 99999987


Q ss_pred             Ee----ccCCcEEEE---eCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         466 TI----ISKDRFKIV---NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       466 ~~----~~~~~~~~~---~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .+    .......+.   .......|.|.++...|.|.|+|.|.|..|....++.+.|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V  286 (290)
T 2o26_X          229 QPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV  286 (290)
T ss_dssp             SEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC
T ss_pred             CCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEE
Confidence            63    222222222   1123568999999999999999999999999877776654

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=99.40  E-value=3.7e-11  Score=108.76  Aligned_cols=185  Identities=10%  Similarity=0.060  Sum_probs=115.5

Q ss_pred             CCCCCeEEeEE-eCCeEEEEEECCCCCCCCccc-eEEEEEEeCCC-----------CCeEEccccCcccceEEEcCCCCC
Q psy7040         225 PPGGPLKVSNV-HAEGVTLDWKVPDDDGGQPIE-KYVVDKMDEAT-----------GRWTPAGETEGPVTGLEVEGLIPN  291 (716)
Q Consensus       225 ~p~~~~~~~~~-~~~~~~l~W~~p~~~~~~~~~-~y~v~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~L~p~  291 (716)
                      .|.+ +..... .-..++.+|++.. +.+. .. .|.+.+.....           .....+.........+.+..+...
T Consensus         3 ~~~n-lsC~~~~~~~~~~C~W~~g~-~~~l-~t~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~~~   79 (206)
T 3v6o_A            3 VNIN-ISCETDGYLTKMTCRWSTST-IQSL-AESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLL   79 (206)
T ss_dssp             -CCC-CEEEECTTSSCEEEEECCCC----------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCCTT
T ss_pred             CCEE-EEEEECCCCcEEEEEecCCC-cCCc-ccccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHHhc
Confidence            3455 666665 3578999999633 2222 23 67777754321           011222221223457888889999


Q ss_pred             CeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEee-eCCeEEEEecCCCCCCCccceEEEEEEeecC-CC
Q psy7040         292 HKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF-DTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-SP  369 (716)
Q Consensus       292 ~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~-~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-~~  369 (716)
                      +.|.|+|.|.|..|..... ..  .........|.+|.++.+... ..+.+.|+|.+|....  ....|.|+|+..+ ..
T Consensus        80 ~~Y~~~V~a~N~~G~~~s~-~~--~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~~~~--~~l~yev~y~~~~~~~  154 (206)
T 3v6o_A           80 SGYTMWIRINHSLGSLDSP-PT--CVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPE--NNLQFQIRYGLSGKEV  154 (206)
T ss_dssp             SCEEEEEEEC---CCEECC-CE--EECGGGGBCCCCCCSCEEEEETTTTEEEEEC----------CEEEEEEEEESSSSC
T ss_pred             ccEEEEEEEEcCCccccCC-cc--cEeecceEcCCCCCceEeEEecCCCeEEEEECCCCCCC--CcEEEEEEEEECCCCC
Confidence            9999999999998865422 11  111122356889999998765 5789999999875432  3579999999876 35


Q ss_pred             ceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCce
Q psy7040         370 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH  417 (716)
Q Consensus       370 ~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~  417 (716)
                      .|............+.+.+|.+++.|.|+|+|.+..|.|.+|+.+...
T Consensus       155 ~w~~~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeWS~~~  202 (206)
T 3v6o_A          155 QWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPA  202 (206)
T ss_dssp             CCEEEEECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCCCCCCE
T ss_pred             ceEEEecccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCCCcce
Confidence            787665443444578999999999999999999988888888877544

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.39  E-value=3.4e-12  Score=102.43  Aligned_cols=94  Identities=21%  Similarity=0.289  Sum_probs=78.3

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC-CcEEEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +.||.++.+..++.+++.|+|++|..+++.+|.+|.|+++..+. ..|..+.....++++|.+|.+++.|.|||+|.|..
T Consensus         8 P~~P~~p~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~   87 (109)
T 1x5x_A            8 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSE   87 (109)
T ss_dssp             CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEECSS
T ss_pred             CcCCCCCEEEEccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeEeCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence            45566678999999999999999987777689999999987665 35666655557899999999999999999999999


Q ss_pred             ccCCCccccceEEec
Q psy7040         134 GESEPLETFSSIIAR  148 (716)
Q Consensus       134 g~~~~s~~~~~~~~~  148 (716)
                      |.+.++......+..
T Consensus        88 G~s~~S~~~~~~T~~  102 (109)
T 1x5x_A           88 GKSNPSEVVEFTTCP  102 (109)
T ss_dssp             CEEEECCCEEEECCC
T ss_pred             CCcCCccCEEeEeCC
Confidence            999888776665543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.39  E-value=1.4e-11  Score=120.27  Aligned_cols=217  Identities=18%  Similarity=0.166  Sum_probs=137.0

Q ss_pred             CeEEecCCCC-CCeEEEEEEEEeCCCCCCCCCCCCceEeecCC----CCCcccccccccEEEecCCeEEEEEEEeccCCC
Q psy7040         382 PKGKVLDLIE-GNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK----VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP  456 (716)
Q Consensus       382 ~~~~i~~l~~-~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~----~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~  456 (716)
                      ..+.|.++.. .+.+.|+|.|.|..|....   .....+...+    ..|.+. ..+....+..|..+.|.|.+.+.|.+
T Consensus        63 ~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~---~~~l~V~~~~~~p~~~p~i~-~~~~~~~v~~g~~v~l~C~~~g~p~~  138 (304)
T 2yd9_A           63 AVLRIQPLRTPRDENVYECVAQNSVGEITV---HAKLTVLREDQLPSGFPNID-MGPQLKVVERTRTATMLCAASGNPDP  138 (304)
T ss_dssp             EEEEECSCCTTTTCSEEEEEEECSSCEECC---EEEEEEECGGGCCTTCCEEE-ECCCCEEEETTSCEEECCEEECSSCC
T ss_pred             eEEEEecccccCCCeEEEEEEECCCCeEEE---EEEEEEeccccCCCCCCeee-cCCccEEEeCCCeEEEEEECccCCCC
Confidence            5788999986 8899999999998876221   1112222211    123333 22355778899999999999999999


Q ss_pred             eEEEEeCCeEeccCCc-EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE-EEEEEE----EEEEEEeCC---C
Q psy7040         457 TKEWLCNDITIISKDR-FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTVL----GCSLKWNPP---E  527 (716)
Q Consensus       457 ~~~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s-~~~~v~----~v~l~W~~p---~  527 (716)
                      .+.|++++..+..... ..+.... ...|.|.++...|.|.|+|.|.|..|..... ..+.+.    ...+.-.+.   .
T Consensus       139 ~v~W~k~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v  217 (304)
T 2yd9_A          139 EITWFKDFLPVDPSASNGRIKQLR-SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEI  217 (304)
T ss_dssp             EEEEEETTEECCGGGGTTSEEECT-TSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCC
T ss_pred             eEEEEECCEECcCCCCcceEEeCC-CeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEE
Confidence            9999999988764321 1121222 2389999999999999999999999876532 334432    222222221   1


Q ss_pred             CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecc-ccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccC
Q psy7040         528 DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN-VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  606 (716)
Q Consensus       528 ~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~  606 (716)
                      ..+......|.+...+    .+.+.|++.+........ ......+.+.++  .+.+.|+|.|.|..|....+..+.|..
T Consensus       218 ~~G~~v~l~C~~~g~p----~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~  291 (304)
T 2yd9_A          218 MPGGNVNITCVAVGSP----MPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKS  291 (304)
T ss_dssp             CTTCCEEEEEEEEEES----CCEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC---
T ss_pred             cCCCeEEEEEEEeeeC----CCEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            2233334455554443    344999998765532221 122345667666  478999999999999877777666766


Q ss_pred             CCC
Q psy7040         607 KPS  609 (716)
Q Consensus       607 ~p~  609 (716)
                      ++.
T Consensus       292 ~~~  294 (304)
T 2yd9_A          292 LPK  294 (304)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            554

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.39  E-value=9.8e-12  Score=101.84  Aligned_cols=101  Identities=29%  Similarity=0.487  Sum_probs=85.1

Q ss_pred             cCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC-CCceEEEeee-cCCCCeEEecCCCCCCeEE
Q psy7040         319 KNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-SPIWEKCAQT-EGDTPKGKVLDLIEGNQYE  396 (716)
Q Consensus       319 ~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~-~~~~~~~~i~~l~~~~~Y~  396 (716)
                      .....+|.+|.++.+...+.+++.|+|.+ ..+++.+|.+|.|+++... ...|...... ......+.|.+|.+++.|.
T Consensus        12 ~~~~~~P~~P~~~~~~~~~~~sv~l~W~p-~~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~p~t~Y~   90 (121)
T 1x4z_A           12 HGRLSPPEAPDRPTISTASETSVYVTWIP-RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYK   90 (121)
T ss_dssp             SSSCCCCCCCCCCEEEECCSSEEEEECCC-CCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEE
T ss_pred             cCcCCCCccCCCCEEEEccCCEEEEEEEC-CCCCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECCCCCCCEEE
Confidence            34557899999999999999999999996 4556778999999999876 5778766543 5678899999999999999


Q ss_pred             EEEEEEeCCCCCCCCCCCCceEee
Q psy7040         397 FRVLAVNKGGPGEPSDPTAPHIAR  420 (716)
Q Consensus       397 ~~v~a~n~~g~~~~s~~~~~~~~~  420 (716)
                      |+|+|.|..|.|.++.....++..
T Consensus        91 frV~A~n~~G~s~~S~~~~~v~~~  114 (121)
T 1x4z_A           91 FRVRALNMLGESEPSAPSRPYVVS  114 (121)
T ss_dssp             EEEEEEETTEECCCCCCCCCEECC
T ss_pred             EEEEEEcCCCcCCCcCCCCCEEcC
Confidence            999999999999999887666553

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.39  E-value=7.5e-13  Score=110.36  Aligned_cols=116  Identities=21%  Similarity=0.300  Sum_probs=90.0

Q ss_pred             EEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCce-EEEee
Q psy7040         298 VRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW-EKCAQ  376 (716)
Q Consensus       298 v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~-~~~~~  376 (716)
                      |.|.|..|.+..+...  +.+.+....|.+|.++.+...+.+++.|+|.+|...++ .|.+|.|+|+..+...+ .....
T Consensus         3 V~A~n~~G~g~~S~~~--~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~   79 (130)
T 1wfo_A            3 SGSSGRIGDGSPSHPP--ILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEV   79 (130)
T ss_dssp             CCCCCCCCCCCCCCCC--SCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCS-CCCEEEEEEEESSCCCSCCCEEE
T ss_pred             eEEEecccCCCCCCCc--EEEEcCCCCCCCCCceEEEecCCCEEEEEEcCCCCCCC-ceEEEEEEEEECCCCCceEEEEE
Confidence            6788999988777642  23334457789999999999999999999999875444 69999999988763321 11123


Q ss_pred             ecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCc
Q psy7040         377 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP  416 (716)
Q Consensus       377 ~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~  416 (716)
                      .......+.|.+|.+++.|.|+|+|.|..|.|.++....+
T Consensus        80 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~  119 (130)
T 1wfo_A           80 LAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVV  119 (130)
T ss_dssp             ECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEE
Confidence            4567889999999999999999999999999887765433

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.39  E-value=4.1e-12  Score=104.03  Aligned_cols=92  Identities=25%  Similarity=0.430  Sum_probs=77.3

Q ss_pred             CCCCCceEE-EEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC-CcEEEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          56 DPEGPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        56 ~p~~~l~~~-~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      .||..+.+. .++.+++.|+|++|..++|.+|.+|.|+++.... ..|..+.....++++|.+|.+++.|.|||+|.|..
T Consensus        19 ~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~   98 (120)
T 2crm_A           19 GIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDG   98 (120)
T ss_dssp             CCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEEEEETT
T ss_pred             CCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCEEEEeccccEEEECCCCCCCEEEEEEEEEcCC
Confidence            344455666 8889999999999987767789999999988766 58888776667899999999999999999999999


Q ss_pred             ccCCCccccceEEe
Q psy7040         134 GESEPLETFSSIIA  147 (716)
Q Consensus       134 g~~~~s~~~~~~~~  147 (716)
                      |.+.++......+.
T Consensus        99 G~s~~S~~~~~~T~  112 (120)
T 2crm_A           99 GQSAVSESLLVQTP  112 (120)
T ss_dssp             EECCCCCCCCCCCC
T ss_pred             ccCCCcccEEEEcC
Confidence            99998876655554

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.37  E-value=8.4e-13  Score=103.55  Aligned_cols=90  Identities=27%  Similarity=0.405  Sum_probs=72.8

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc---cCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      +.||.+|.+.. ..+++.|+|++|.. ++++|.+|.|+|+. +++.|..+..   ...+++++.+|.+++.|.|||.|+|
T Consensus         8 ~~pP~~l~v~~-~~~sv~L~W~pP~~-~~~~I~gY~vey~~-~~~~W~~~~~~~~~~~t~~~v~~L~pg~~Y~FRV~A~n   84 (108)
T 1v5j_A            8 LSPPRGLVAVR-TPRGVLLHWDPPEL-VPKRLDGYVLEGRQ-GSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFA   84 (108)
T ss_dssp             CCCCEEEEEEE-CSSSEEEEEECCSC-CSSCCCBEEEEEEE-TTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEEE
T ss_pred             CCCCcceEEEE-eCCEEEEEECCCCC-CCCCCcEEEEEEEe-CCCCcEEeeeecCCCcCEEEeCCCCCCCEEEEEEEEEc
Confidence            34555576755 56799999999984 67789999999998 5667876543   3458999999999999999999999


Q ss_pred             cCccCCCccccceEEe
Q psy7040         132 KEGESEPLETFSSIIA  147 (716)
Q Consensus       132 ~~g~~~~s~~~~~~~~  147 (716)
                      ..|.|.+|......+.
T Consensus        85 ~~G~s~pS~~~~v~T~  100 (108)
T 1v5j_A           85 GSFVSDPSNTANVSTS  100 (108)
T ss_dssp             TTEEEEECSCCCCCCS
T ss_pred             CCCCcCCCCCEEEEeC
Confidence            9999999987665554

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.37  E-value=2.3e-11  Score=126.29  Aligned_cols=299  Identities=13%  Similarity=0.125  Sum_probs=160.4

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCC----------CCCCCCCceEee-cCCCCCcccccccccEEEecCCeEEEEE
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPG----------EPSDPTAPHIAR-AKKVSPYINRDQLSDIKVRAGSNFEFDI  448 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~----------~~s~~~~~~~~~-~~~~~P~~~~~~~~~~~~~~g~~~~~~~  448 (716)
                      ....+.|.++...+...|+|.|.|..|..          ...... ...+. ....+|.+..... ...+..|..+.|.|
T Consensus        77 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~-~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C  154 (457)
T 1hzh_H           77 NTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGT-TVIVSSASTKGPSVFPLAP-SSKSTSGGTAALGC  154 (457)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCE-EEEECSCCCBCCEEEEECC-CSCCCTTCCEEEEE
T ss_pred             CEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcE-EEEecCCCCCCCeEEecCc-cccccCCCcEEEEE
Confidence            34579999999999999999999987610          111111 12221 2223454432111 12356899999999


Q ss_pred             EEecc-CC-CeEEEEeCCeEeccCCcEEEEeCCC----eEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE-----
Q psy7040         449 NVIGE-PI-PTKEWLCNDITIISKDRFKIVNDDK----STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-----  517 (716)
Q Consensus       449 ~v~~~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-----  517 (716)
                      .+.+. |. +.+.|++++..+...........+.    ...|.|.++..+| |.|+|.|.|..+.......+.+.     
T Consensus       155 ~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~  233 (457)
T 1hzh_H          155 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKT  233 (457)
T ss_dssp             EEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSS
T ss_pred             EEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcc
Confidence            99877 64 7899999986432111111111111    2378999999988 99999999987765444333211     


Q ss_pred             -------------EEEEEEeCCC-----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec----cccceeEEEEc
Q psy7040         518 -------------GCSLKWNPPE-----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID----NVDYFTKITIR  575 (716)
Q Consensus       518 -------------~v~l~W~~p~-----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~i~  575 (716)
                                   ...+.-.+|.     ..+......|.+...+.......+.|++.+.......    .......+.+.
T Consensus       234 ~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~  313 (457)
T 1hzh_H          234 HTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVV  313 (457)
T ss_dssp             CSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEE
T ss_pred             cccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEE
Confidence                         1122122332     1133334555554221110012599999875442110    00111223332


Q ss_pred             ---CCCCCC---eEEEEEEEEcCCCCCccceeeec-cCCCCCCcccee-------eccceeEEEEEEeeEEEEeeeeccC
Q psy7040         576 ---PLQRSD---TAQYTVTATNSQGKDQVFIEVVV-TDKPSAPEGPIQ-------WLLTLTDVTWEISNYLQELHSSLMP  641 (716)
Q Consensus       576 ---~L~~~~---~y~~~v~a~n~~G~~~~s~~~~v-~~~p~~~~~~~~-------~~~~~v~l~w~i~~y~v~~~~~~~~  641 (716)
                         .+...+   .+.|+|.|.|..+.......+.+ ......|. +..       +....+.|.+.+.|+.-.       
T Consensus       314 ~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~-v~~~~~~~~~~~~~~~~l~C~~~g~~p~-------  385 (457)
T 1hzh_H          314 SVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ-VYTLPPSRDELTKNQVSLTCLVKGFYPS-------  385 (457)
T ss_dssp             EEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCE-EEEECCCGGGGGSSEEEEEEEEEEEBSS-------
T ss_pred             EEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCe-EEEECCCccccCCCcEEEEEEEEeEECC-------
Confidence               233444   78999999987665433333322 11222222 211       122335544433332000       


Q ss_pred             ceeeEEEEeCCeEeeecc--------cc---eeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         642 ISLESQYLMNDKRVTIDN--------VD---YFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       642 ~~~~~~W~~~~~~~~~~~--------~~---~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                       .-.+.|+++|..+....        .+   ....+.|......+.|.|+|.|.|.....
T Consensus       386 -~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  444 (457)
T 1hzh_H          386 -DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  444 (457)
T ss_dssp             -CCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             -CCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCCC
Confidence             00689999999875431        11   11345555555578999999999976544

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.37  E-value=6.6e-12  Score=117.12  Aligned_cols=185  Identities=19%  Similarity=0.283  Sum_probs=116.0

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEE-EEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....+. .........|.|.++...|.|.|+|.|.|..|......
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~  106 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY  106 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccE
Confidence            56789999999999999999999999999998876443321 11222345899999999999999999999887655444


Q ss_pred             EEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcC
Q psy7040         513 KVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS  592 (716)
Q Consensus       513 ~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~  592 (716)
                      .+.+.      ..+..   .+.   .                .....          ....   +..|....+.|.+.. 
T Consensus       107 ~l~V~------~~~~~---~p~---~----------------~~~~~----------~~~~---~~~g~~~~l~C~~~~-  144 (231)
T 3ojm_B          107 HLDVV------ERSRH---RPI---L----------------QAGLP----------ANAS---TVVGGDVEFVCKVYS-  144 (231)
T ss_dssp             EEEEE------CCCCC---CCE---E----------------CTTCS----------CCEE---EETTCCEEEECCEEC-
T ss_pred             EEEEE------cCCCC---CCc---e----------------eeccC----------CceE---EEeCCcEEEEEEEec-
Confidence            33332      00100   000   0                00000          0000   112333444443321 


Q ss_pred             CCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEe----CCeEeeec----------
Q psy7040         593 QGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLM----NDKRVTID----------  658 (716)
Q Consensus       593 ~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~----~~~~~~~~----------  658 (716)
                        .            |. |                                 .+.|++    +|..+..+          
T Consensus       145 --~------------p~-p---------------------------------~v~W~~~~~~~g~~~~~~~~~~~~~~~~  176 (231)
T 3ojm_B          145 --D------------AQ-P---------------------------------HIQWIKHVEKNGSKYGPDGLPYLKVLKH  176 (231)
T ss_dssp             --S------------SC-C---------------------------------EEEEEEECCBTTBSBCTTSCBCEEEEEE
T ss_pred             --C------------CC-C---------------------------------EEEEEECCCCCCccccCCCcceEeEecc
Confidence              0            00 0                                 456776    55544322          


Q ss_pred             ---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCC
Q psy7040         659 ---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP  708 (716)
Q Consensus       659 ---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~p  708 (716)
                         .......|.|.++...|.|.|+|.|.|..|....+..|.|..+|.+|...
T Consensus       177 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~~~  229 (231)
T 3ojm_B          177 SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE  229 (231)
T ss_dssp             CSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC------
T ss_pred             cccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCccc
Confidence               11122569999999999999999999999999999999999999988653

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.36  E-value=7.5e-12  Score=100.71  Aligned_cols=96  Identities=32%  Similarity=0.519  Sum_probs=81.9

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA  300 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a  300 (716)
                      .+|.+|.+ +.+.....+++.|+|.+|..+++.++.+|.|+++......|..+.........+.+.+|.+++.|.|+|+|
T Consensus         7 ~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   85 (111)
T 1x5y_A            7 GPTSAPQH-LTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVG   85 (111)
T ss_dssp             SCCCCCEE-EEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEE
T ss_pred             CCCcCCCC-CEEEeccCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEccccCCcccEEEECCCCCCCEEEEEEEE
Confidence            46777776 78888899999999999887777789999999998888889887655456789999999999999999999


Q ss_pred             EcCCCCCCCCcccceEE
Q psy7040         301 VNKQGKSEPLTTTASIE  317 (716)
Q Consensus       301 ~n~~g~~~~~~~~~~~~  317 (716)
                      .|..|.+.++..+..++
T Consensus        86 ~n~~G~s~~S~~~~~v~  102 (111)
T 1x5y_A           86 VNIAGRSEPATLLQPVT  102 (111)
T ss_dssp             EETTEECCCCCCSSCBC
T ss_pred             EcCCcCCCCccCCCCEE
Confidence            99999988887764444

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.36  E-value=6.3e-12  Score=99.95  Aligned_cols=92  Identities=21%  Similarity=0.265  Sum_probs=74.3

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .+|..+++..++.+++.|+|++|.. +|.+|.+|+|+|+.... .|..+.....+++.|.+|.+++.|.|+|+|.|..|.
T Consensus         9 ~~P~~~~~~~~s~~sv~l~W~~p~~-~g~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~   86 (106)
T 1x4x_A            9 DQCKPPQVTCRSATCAQVNWEVPLS-NGTDVTEYRLEWGGVEG-SMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGA   86 (106)
T ss_dssp             CCCCCCCCEEEETTEEEEECCCCSC-SSSCCCEEEEEEESSTT-SCCEEEEESCSEEEEESCCSSCEEEEEEEEECSSCC
T ss_pred             CCCCCCEEEEcCCCEEEEEEcCCCC-CCCcceEEEEEEEcCCC-ceEEEEeCCcceEEEcCCCCCCEEEEEEEEEcCCcC
Confidence            4556688889999999999999875 66679999999987653 344444455689999999999999999999999999


Q ss_pred             CCCccccceEEecC
Q psy7040         136 SEPLETFSSIIARD  149 (716)
Q Consensus       136 ~~~s~~~~~~~~~~  149 (716)
                      +.++......+...
T Consensus        87 g~~S~~v~~~T~~~  100 (106)
T 1x4x_A           87 GPFSEVVACVTPPS  100 (106)
T ss_dssp             CCBCCCEEEECCCC
T ss_pred             CCCcCCEEEECCCC
Confidence            98887766655543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.36  E-value=3.6e-11  Score=110.33  Aligned_cols=187  Identities=16%  Similarity=0.186  Sum_probs=117.6

Q ss_pred             cCCeEEEEEEEecc-CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEE
Q psy7040         440 AGSNFEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG  518 (716)
Q Consensus       440 ~g~~~~~~~~v~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~  518 (716)
                      .++.+.|.|.+.+. |.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|.......+.+..
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~   95 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA   95 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHH
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEee
Confidence            56778999999885 58899999999999888888888888888899999999999999999999777554333222110


Q ss_pred             EEEEEeCCCCCCCCceeeEEE-EEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCc
Q psy7040         519 CSLKWNPPEDDGGAPIEYYMV-EKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ  597 (716)
Q Consensus       519 v~l~W~~p~~~~~~~i~~y~v-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~  597 (716)
                          +....    ........ .......    ........           ...   .+..|....+.|.+..   .  
T Consensus        96 ----~~~~~----~~~~~~~~~~~~~~~~----p~~~~~~~-----------~~~---~v~~g~~~~l~C~~~g---~--  144 (212)
T 2r15_A           96 ----YDEAY----AEFQRLKQAAIAEKNR----ARVLGGLP-----------DVV---TIQEGKALNLTCNVWG---D--  144 (212)
T ss_dssp             ----HHHHH----HHHHHHHHHHHHHHHS----CEEEEBCC-----------SEE---EEETTCCEEEEEEEEC---S--
T ss_pred             ----ccchh----hhccccCcccccccCC----CcccccCC-----------CcE---EEccCCeEEEEEEEcC---C--
Confidence                00000    00000000 0000000    00000000           000   0122333444444331   0  


Q ss_pred             cceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeeccc-------ceeeEEEEcc
Q psy7040         598 VFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNV-------DYFTKITIRP  670 (716)
Q Consensus       598 ~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~-------~~~~~~~i~~  670 (716)
                                |  +.                                .+.|++++..+.....       +....|.|.+
T Consensus       145 ----------p--~p--------------------------------~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  180 (212)
T 2r15_A          145 ----------P--PP--------------------------------EVSWLKNEKALAQTDHCNLKFEAGRTAYFTING  180 (212)
T ss_dssp             ----------S--CC--------------------------------EEEEEETTEEECCCSSEEEEEETTTEEEEEESS
T ss_pred             ----------C--Cc--------------------------------eEEEEECCeECccCCCEEEEEcCCCEEEEEEcC
Confidence                      0  00                                5789999988776411       2235899999


Q ss_pred             CCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         671 LQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       671 l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      +...|.|.|+|.|.|..|....+..|.|..|
T Consensus       181 ~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          181 VSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             cchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            9999999999999999999999999998753

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.36  E-value=2.1e-12  Score=103.72  Aligned_cols=91  Identities=23%  Similarity=0.459  Sum_probs=68.7

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcC-CCCcEEEeccc-------------CCCeEEecCCCCCc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP-ETGVWIPVGKT-------------REPEMDVTGLTPGH  121 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~-~~~~~~~~~~~-------------~~~~~~i~~L~~~~  121 (716)
                      .||.+..+..++.+++.|+|.+|.++ |.+|.+|.|+++.. ....|..+...             ..++++|.+|.|++
T Consensus         4 ~pP~~P~v~~~~~~sv~L~W~~P~~~-G~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t   82 (115)
T 2ic2_A            4 YPPTPPNVTRLSDESVMLRWMVPRND-GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQH   82 (115)
T ss_dssp             CCCCCCEEEECC---EEEEEEEECCS-SCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSE
T ss_pred             CCCCcCEeEEEeCCEEEEEEcCCCCC-CCCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCCCCCCC
Confidence            34555568899999999999999855 48899999999987 45778766532             12578999999999


Q ss_pred             EEEEEEEEEecCccCCCccccceEEe
Q psy7040         122 EYKFRVKALNKEGESEPLETFSSIIA  147 (716)
Q Consensus       122 ~y~~~v~a~~~~g~~~~s~~~~~~~~  147 (716)
                      .|.|||+|.|..|.+.+|.....+..
T Consensus        83 ~Y~FRV~A~N~~G~~~pS~~S~~~~~  108 (115)
T 2ic2_A           83 TYRFRILAVYSNNDNKESNTSAKFYL  108 (115)
T ss_dssp             EEEEEEEEEETTSCEEECCCCCCEEE
T ss_pred             EEEEEEEEEeCCCCCCCCCCCCCEEe
Confidence            99999999999998888776665544

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.35  E-value=2.1e-12  Score=102.61  Aligned_cols=95  Identities=21%  Similarity=0.408  Sum_probs=77.4

Q ss_pred             CCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEe---eecCCCCeEEecCCCCCCeEEEE
Q psy7040         322 FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCA---QTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       322 ~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      ..+|.+|.++.+...+.+ +.|+|.+|..++|.+|.+|.|+|+..+...|....   ........+.|.+|.|++.|.|+
T Consensus         4 ~~~P~~P~~~~~~~~~~~-v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   82 (105)
T 2haz_A            4 MDTPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   82 (105)
T ss_dssp             CCCCCCCEEEEEEECSSC-EEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEE
T ss_pred             CCCCcCCCCCEEEEcCCc-EEEEEcCCcccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCEEEEE
Confidence            367888888888888877 99999999877776799999999988766674322   12235688999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCce
Q psy7040         399 VLAVNKGGPGEPSDPTAPH  417 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~  417 (716)
                      |+|.|..|.|.+|....+.
T Consensus        83 V~A~n~~G~g~~S~~~~~~  101 (105)
T 2haz_A           83 LAALNGKGLGEISAASEFK  101 (105)
T ss_dssp             EEEEETTEECCCCCCEEEE
T ss_pred             EEEEcCCccCCCcCCEeeE
Confidence            9999999999988765443

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.35  E-value=8.7e-11  Score=105.54  Aligned_cols=164  Identities=20%  Similarity=0.271  Sum_probs=111.6

Q ss_pred             cEEEec-CCeEEEEEEEeccCC--CeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         435 DIKVRA-GSNFEFDINVIGEPI--PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       435 ~~~~~~-g~~~~~~~~v~~~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      ...+.. |+.+.|.|.+.+.|.  +.+.|++++..+.......     ....|.|.++...|.|.|+|.|.|. |....+
T Consensus        11 ~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~   84 (190)
T 2wv3_A           11 EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVYHFV-SAPKAN   84 (190)
T ss_dssp             CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEEEET-TEEEEE
T ss_pred             eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEEEeC-Cccccc
Confidence            455666 999999999999887  7899999999886544322     4578999999999999999999998 766555


Q ss_pred             EEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEc
Q psy7040         512 AKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN  591 (716)
Q Consensus       512 ~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n  591 (716)
                      ..+.+.      .+|.      +.     ..  .                        ....   +..|..-.+.|.+..
T Consensus        85 ~~l~V~------~~p~------~~-----~~--~------------------------~~~~---~~~g~~v~l~C~~~g  118 (190)
T 2wv3_A           85 ATIEVK------AAPD------IT-----GH--K------------------------RSEN---KNEGQDAMMYCKSVG  118 (190)
T ss_dssp             EEEEEE------CCCE------EE-----EE--C------------------------SEEE---EETTSCEEEEEEEEC
T ss_pred             EEEEEe------cCCc------cc-----cc--C------------------------Ccce---eeCCCcEEEEEEeCc
Confidence            544443      0110      00     00  0                        0000   224455666676621


Q ss_pred             CCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEe--CCeEeeec---------cc
Q psy7040         592 SQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLM--NDKRVTID---------NV  660 (716)
Q Consensus       592 ~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~--~~~~~~~~---------~~  660 (716)
                         .            |. |                                 .+.|++  +|..+...         ..
T Consensus       119 ---~------------p~-p---------------------------------~i~W~~~~~g~~~~~~~~~~~~~~~~~  149 (190)
T 2wv3_A          119 ---Y------------PH-P---------------------------------EWMWRKKENGVFEEISNSSGRFFIINK  149 (190)
T ss_dssp             ---S------------SC-C---------------------------------EEEEEEEETTEEEECCCTTSCEEEEEC
T ss_pred             ---c------------CC-C---------------------------------ceEEEEcCCCceeeeecCCCeEEEecC
Confidence               1            00 0                                 356676  55554321         11


Q ss_pred             ceeeEEEEccCC-CCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         661 DYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       661 ~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      .....|.|.++. .+|.|.|+|.|.|..|....+..|.|.
T Consensus       150 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            122479999999 799999999999999999988888875

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.34  E-value=9.1e-12  Score=101.62  Aligned_cols=94  Identities=24%  Similarity=0.374  Sum_probs=79.3

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC-CcEEEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +.+|..+.+..++.+++.|+|++|. +++.+|.+|.|+|+.... ..|..+.....+.++|.+|.+++.|.|+|+|.|..
T Consensus        18 P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~   96 (118)
T 1x3d_A           18 PDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDY   96 (118)
T ss_dssp             CCCCCCCEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEECCEEESS
T ss_pred             CcCCCCcEEeccCCCEEEEEECCCC-CCCCcceEEEEEEecCCCCCCeEEeeccCCcEEEeCCCCCCCEEEEEEEEEECC
Confidence            3456668899999999999999987 456779999999987765 67877766667899999999999999999999999


Q ss_pred             ccCCCccccceEEecC
Q psy7040         134 GESEPLETFSSIIARD  149 (716)
Q Consensus       134 g~~~~s~~~~~~~~~~  149 (716)
                      |.+.++......+...
T Consensus        97 G~s~~S~~~~~~T~~~  112 (118)
T 1x3d_A           97 GTSGFSEEVLYYTSGC  112 (118)
T ss_dssp             CBCCCCCCEEEECSCC
T ss_pred             CCCCCccCEEEEcCCC
Confidence            9999988777665443

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.34  E-value=7.5e-12  Score=102.87  Aligned_cols=99  Identities=27%  Similarity=0.369  Sum_probs=82.1

Q ss_pred             CCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEee---cCCCceEEEeee--cCCCCeEEecCCCCCCe
Q psy7040         320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKE---KYSPIWEKCAQT--EGDTPKGKVLDLIEGNQ  394 (716)
Q Consensus       320 ~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~---~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~  394 (716)
                      .+..+|.+|.++.+...+.+++.|+|.+|. +++.+|.+|.|+++.   .....|......  ......+.+.+|.+++.
T Consensus        13 ~~~~~P~~P~~l~~~~~~~~sv~l~W~p~~-~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~L~p~t~   91 (124)
T 1wis_A           13 VPPELPGPPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTC   91 (124)
T ss_dssp             CCCCCCCCCEEEEEESCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSE
T ss_pred             CCCCCCccCCCCEEEEecCCEEEEEEECCC-CCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeCCCCCCCE
Confidence            345788999999999999999999998765 566789999999987   345678765543  56778999999999999


Q ss_pred             EEEEEEEEeCCCCCCCCCCCCceEe
Q psy7040         395 YEFRVLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       395 Y~~~v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      |.|+|+|.|..|.|.++.....++.
T Consensus        92 Y~frV~A~N~~G~s~~S~~~~~~~T  116 (124)
T 1wis_A           92 YSFRMRQVNIVGTSPPSQPSRKIQT  116 (124)
T ss_dssp             ECCCCEEECSSCBCCCCCCCCCEEC
T ss_pred             EEEEEEEEECCccCCCcCCccceEc
Confidence            9999999999999999887654443

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.34  E-value=6.7e-12  Score=102.88  Aligned_cols=98  Identities=22%  Similarity=0.302  Sum_probs=81.7

Q ss_pred             CCCCCCCCCCCcEEEeeeCCeEEEEecCCC-CCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPE-QNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       320 ~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~-~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      +...+|.+|.++.+.....+++.|+|.+|. ..++ .|.+|.|+|+..+...|............+.|.+|.+++.|.|+
T Consensus        13 t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   91 (120)
T 1x5f_A           13 TTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHG-DNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFR   91 (120)
T ss_dssp             CCCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSC-CSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEE
T ss_pred             CCCCCCCCCCCcEEEecCCCEEEEEECCCCCCCCC-cEEEEEEEEEECCCCCceEEEeccCCccEEEeCCCCCCCEEEEE
Confidence            344778999999999999999999999987 4444 89999999998876666665555667899999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceE
Q psy7040         399 VLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~~  418 (716)
                      |+|.|..|.|.++....+.+
T Consensus        92 V~A~n~~G~g~~S~~~~~~T  111 (120)
T 1x5f_A           92 VMAQNKHGSGESSAPLRVET  111 (120)
T ss_dssp             EEEECSSCEEEECCCEEEEC
T ss_pred             EEEECCCccCCCCCCEEEEe
Confidence            99999999988877654443

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.34  E-value=7.8e-11  Score=106.11  Aligned_cols=176  Identities=20%  Similarity=0.290  Sum_probs=115.5

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +|.+. ..+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+...  ...|.|.++...|.|.|+|.+.|
T Consensus         7 ~P~i~-~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~   83 (192)
T 2iep_A            7 APVIT-TPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN--GQLLTILSVEDSDDGIYCCTANN   83 (192)
T ss_dssp             EEEES-SCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGG--GTEEEESSCCGGGCEEEEEEEEC
T ss_pred             Cceee-cCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCC--ccEEEEcCCCcccCeEEEEEEEc
Confidence            44443 334567899999999999999999999999999988764 345555433  34799999999999999999998


Q ss_pred             CCCcee-eEEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCe
Q psy7040         504 SWGTDK-GTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDT  582 (716)
Q Consensus       504 ~~g~~~-~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~  582 (716)
                      ..|... ....+.+..      +|.           +  ....                        ....   +..|..
T Consensus        84 ~~~~~~~~~~~l~v~~------~p~-----------~--~~~~------------------------~~~~---~~~g~~  117 (192)
T 2iep_A           84 GVGGAVESCGALQVKM------KPK-----------I--TRPP------------------------INVK---IIEGLK  117 (192)
T ss_dssp             SSSCCEEEEEEEEEEE------EEE-----------E--EECC------------------------CCEE---EETTSC
T ss_pred             CCCceeEeEEEEEEEe------CCc-----------c--ccCC------------------------cceE---EeCCCc
Confidence            876532 222222110      000           0  0000                        0000   011222


Q ss_pred             EEEEEEEEcCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeec
Q psy7040         583 AQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTID  658 (716)
Q Consensus       583 y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~  658 (716)
                      ..+.|.                                                     +.|    .+.|++++..+...
T Consensus       118 ~~l~C~-----------------------------------------------------~~g~p~~~v~W~~~~~~~~~~  144 (192)
T 2iep_A          118 AVLPCT-----------------------------------------------------TMGNPKPSVSWIKGDSALREN  144 (192)
T ss_dssp             EEECCE-----------------------------------------------------EEEESCCEEEEEETTEECCCC
T ss_pred             EEEEEE-----------------------------------------------------EeccCCceEEEEeCCEEccCC
Confidence            223332                                                     222    57899998877654


Q ss_pred             c---cceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEEecCC
Q psy7040         659 N---VDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDKP  702 (716)
Q Consensus       659 ~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v~~~p  702 (716)
                      .   ......|.|.++...|.|.|+|.|.|..|.. +....|.|..+|
T Consensus       145 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          145 SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             SSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            1   1122479999999999999999999999988 557889998865

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.34  E-value=1.2e-11  Score=98.36  Aligned_cols=95  Identities=19%  Similarity=0.231  Sum_probs=76.5

Q ss_pred             CCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       321 ~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      ...+|.+|.++.+...+.+++.|+|.+|.. +|..|.+|.|+++... ..|...  ......++.|.+|.+++.|.|+|+
T Consensus         4 ~~~~P~~P~~~~~~~~s~~sv~l~W~~p~~-~g~~i~~Y~v~~~~~~-~~~~~~--~~~~~~~~~v~~L~p~t~Y~frV~   79 (106)
T 1x4x_A            4 GSSGPDQCKPPQVTCRSATCAQVNWEVPLS-NGTDVTEYRLEWGGVE-GSMQIC--YCGPGLSYEIKGLSPATTYYCRVQ   79 (106)
T ss_dssp             SCCSCCCCCCCCCEEEETTEEEEECCCCSC-SSSCCCEEEEEEESST-TSCCEE--EEESCSEEEEESCCSSCEEEEEEE
T ss_pred             CCCCcCCCCCCEEEEcCCCEEEEEEcCCCC-CCCcceEEEEEEEcCC-CceEEE--EeCCcceEEEcCCCCCCEEEEEEE
Confidence            346788999999999999999999999876 5668999999998765 234322  234567899999999999999999


Q ss_pred             EEeCCCCCCCCCCCCceEe
Q psy7040         401 AVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~~~  419 (716)
                      |.|..|.|.++......+.
T Consensus        80 A~n~~G~g~~S~~v~~~T~   98 (106)
T 1x4x_A           80 ALSVVGAGPFSEVVACVTP   98 (106)
T ss_dssp             EECSSCCCCBCCCEEEECC
T ss_pred             EEcCCcCCCCcCCEEEECC
Confidence            9999999988776544443

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2.7e-12  Score=104.92  Aligned_cols=105  Identities=31%  Similarity=0.555  Sum_probs=90.6

Q ss_pred             CCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcC
Q psy7040         208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEG  287 (716)
Q Consensus       208 ~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~  287 (716)
                      .|..+..+.+.+.++|.+|.+ +.+.....+++.|+|.+|..+++.++.+|.|+++......|..+... .....+.+.+
T Consensus         3 ~G~~~~~~~v~~~~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~w~~~~~~-~~~~~~~v~~   80 (120)
T 2yux_A            3 SGSSGASIDIQIIDRPGPPQI-VKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEH-YHRTSATITE   80 (120)
T ss_dssp             CCCCCCCCCCCCCCCCCCCSC-EEEEEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTTCCCEEEESS-CCSSCCEECC
T ss_pred             CCcccEEEEEEeecCCCcCCC-CEEEEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCCCceEEeeec-CCcCEEEECC
Confidence            466777778888899999998 89989999999999999887777889999999998877888876532 4578899999


Q ss_pred             CCCCCeEEEEEEEEcCCCCCCCCcccc
Q psy7040         288 LIPNHKYKFRVRAVNKQGKSEPLTTTA  314 (716)
Q Consensus       288 L~p~~~y~~~v~a~n~~g~~~~~~~~~  314 (716)
                      |.|++.|.|+|+|.|..|.+.++..+.
T Consensus        81 L~p~t~Y~frV~A~n~~G~s~~S~~s~  107 (120)
T 2yux_A           81 LVIGNEYYFRVFSENMCGLSEDATMTK  107 (120)
T ss_dssp             CCSSEEEEEEECCCSSSCSCSSCEECS
T ss_pred             CCCCCEEEEEEEEeeCCcCCCCccCcC
Confidence            999999999999999999998877553

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=99.33  E-value=5e-12  Score=103.46  Aligned_cols=93  Identities=22%  Similarity=0.401  Sum_probs=76.3

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEe---eecCCCCeEEecCCCCCCeEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCA---QTEGDTPKGKVLDLIEGNQYEFRV  399 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~~~Y~~~v  399 (716)
                      ..|.+|.++.+...+.+ +.|+|.+|..++|.+|.+|.|+|+..+...|....   ........++|.+|.+++.|.|+|
T Consensus         6 ~~P~~P~~~~~~~~~~t-v~l~W~~P~~~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV   84 (122)
T 2e3v_A            6 SGPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL   84 (122)
T ss_dssp             CCCCCCEEEEEEECSSC-EEEEEECCCCC--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTCEEEEEE
T ss_pred             cCCcCCCccEEEecCCc-EEEEECCCCcCCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCCEEEEEE
Confidence            56888888988888777 99999999877776699999999988767774322   223567899999999999999999


Q ss_pred             EEEeCCCCCCCCCCCCc
Q psy7040         400 LAVNKGGPGEPSDPTAP  416 (716)
Q Consensus       400 ~a~n~~g~~~~s~~~~~  416 (716)
                      +|.|..|.|.+|.....
T Consensus        85 ~A~n~~G~g~~S~~~~~  101 (122)
T 2e3v_A           85 AALNGKGLGEISAASEF  101 (122)
T ss_dssp             EEEETTEECCCCCCEEE
T ss_pred             EEEeCCccCCCcccccc
Confidence            99999999999887655

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.33  E-value=4.6e-12  Score=124.10  Aligned_cols=220  Identities=11%  Similarity=0.029  Sum_probs=136.7

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCccc-ccccccEEEecCCeEEEEEEE-eccCCCe
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYIN-RDQLSDIKVRAGSNFEFDINV-IGEPIPT  457 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~-~~~~~~~~~~~g~~~~~~~~v-~~~p~~~  457 (716)
                      ...++.|.++...+.+.|+|+|.|..+......  .......   .|.+. ......+....+..+.+.|.+ .+.|.+.
T Consensus        72 ~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~--~~~~v~~---~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~  146 (308)
T 4fom_A           72 NDATITLHNIGFSDSGKYICKAVTFPLGNAQSS--TTVTVLV---EPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAH  146 (308)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEETTTEEEEEE--EEEEEEB---CCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCE
T ss_pred             CceEEEEccCCHHHCEEEEEEEeeCCCcceeee--eEEEeee---ccccccccccceeEEcCCceEEEEEEecCCcCCce
Confidence            345799999999999999999998643221111  1111111   11111 112223344567889999976 7899999


Q ss_pred             EEEEeCCeEeccCCcEEEEeCC---CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE--E-EEEEEEeCCC----
Q psy7040         458 KEWLCNDITIISKDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV--L-GCSLKWNPPE----  527 (716)
Q Consensus       458 ~~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v--~-~v~l~W~~p~----  527 (716)
                      +.|++++..+......  ....   ....|.|......|.|.|+|.|.|..|.......+.+  . ...+.-.+..    
T Consensus       147 i~W~~~~~~~~~~~~~--~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~  224 (308)
T 4fom_A          147 IDWEGDLGEMESTTTS--FPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWF  224 (308)
T ss_dssp             EEECCCSSBCCEEEEE--CTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEE
T ss_pred             EEEEECCcccccccce--eeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeee
Confidence            9999998776422111  0001   1346899999999999999999999887655544432  2 1222211111    


Q ss_pred             CCCCCceeeEEEEEEecCCCce-eeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccC
Q psy7040         528 DDGGAPIEYYMVEKMETDTGKV-LIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  606 (716)
Q Consensus       528 ~~~~~~i~~y~v~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~  606 (716)
                      ..+......|.+...    +.| .+.|++.+..............+.|.++...+.+.|+|.|.|..|....+..+.|.+
T Consensus       225 ~~g~~v~l~C~~~g~----P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~  300 (308)
T 4fom_A          225 VGRKGVNLKCNADAN----PPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISD  300 (308)
T ss_dssp             TTCCSCEEECCEEEE----SCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEEC
T ss_pred             eccccEEEEEEEecC----CCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEc
Confidence            111122234444333    333 388998776554333334446677889999999999999999999887777777888


Q ss_pred             CCCC
Q psy7040         607 KPSA  610 (716)
Q Consensus       607 ~p~~  610 (716)
                      +|-.
T Consensus       301 ~P~~  304 (308)
T 4fom_A          301 PPHH  304 (308)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            7753

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.33  E-value=3.5e-12  Score=100.00  Aligned_cols=94  Identities=26%  Similarity=0.349  Sum_probs=78.0

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEee-ecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      .+|++|.++.+.. ..+++.|+|.+|.. ++++|.+|.|+|+. .+..|..... .....+++.+.+|.+++.|.|+|.|
T Consensus         6 ep~~pP~~l~v~~-~~~sv~L~W~pP~~-~~~~I~gY~vey~~-~~~~W~~~~~~~~~~~t~~~v~~L~pg~~Y~FRV~A   82 (108)
T 1v5j_A            6 SGLSPPRGLVAVR-TPRGVLLHWDPPEL-VPKRLDGYVLEGRQ-GSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVA   82 (108)
T ss_dssp             CCCCCCEEEEEEE-CSSSEEEEEECCSC-CSSCCCBEEEEEEE-TTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEE
T ss_pred             CCCCCCcceEEEE-eCCEEEEEECCCCC-CCCCCcEEEEEEEe-CCCCcEEeeeecCCCcCEEEeCCCCCCCEEEEEEEE
Confidence            4568898998875 56789999999885 66789999999998 4467876553 3567899999999999999999999


Q ss_pred             EeCCCCCCCCCCCCceEe
Q psy7040         402 VNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~~~  419 (716)
                      .|..|.|.+|+.....+.
T Consensus        83 ~n~~G~s~pS~~~~v~T~  100 (108)
T 1v5j_A           83 FAGSFVSDPSNTANVSTS  100 (108)
T ss_dssp             EETTEEEEECSCCCCCCS
T ss_pred             EcCCCCcCCCCCEEEEeC
Confidence            999999999887665543

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=3.6e-12  Score=104.15  Aligned_cols=92  Identities=28%  Similarity=0.487  Sum_probs=78.6

Q ss_pred             cCCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc-cCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          53 RGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK-TREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        53 ~~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      ..+.||..+.+..++.+++.|+|++|..+++.++.+|.|+++..+...|..+.. ...++++|.+|.+++.|.|+|+|.|
T Consensus        16 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n   95 (120)
T 2yux_A           16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATITELVIGNEYYFRVFSEN   95 (120)
T ss_dssp             CCCCCCSCEEEEEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTTCCCEEEESSCCSSCCEECCCCSSEEEEEEECCCS
T ss_pred             cCCCcCCCCEEEEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCCCceEEeeecCCcCEEEECCCCCCCEEEEEEEEee
Confidence            445667778888999999999999998777788999999999888888887653 3458899999999999999999999


Q ss_pred             cCccCCCccccce
Q psy7040         132 KEGESEPLETFSS  144 (716)
Q Consensus       132 ~~g~~~~s~~~~~  144 (716)
                      ..|.+.++.....
T Consensus        96 ~~G~s~~S~~s~~  108 (120)
T 2yux_A           96 MCGLSEDATMTKE  108 (120)
T ss_dssp             SSCSCSSCEECSS
T ss_pred             CCcCCCCccCcCC
Confidence            9999998875543

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2e-11  Score=99.84  Aligned_cols=97  Identities=25%  Similarity=0.315  Sum_probs=81.9

Q ss_pred             CCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       321 ~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      ...+|.+|.++.+...+.+++.|+|.+|... ++.+.+|.|+|+..+...|............+.|.+|.+++.|.|+|+
T Consensus        14 ~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~-~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   92 (119)
T 2ed7_A           14 SSVLPSAPRDVVPVLVSSRFVRLSWRPPAEA-KGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVV   92 (119)
T ss_dssp             SSSSCCCCSCCEEEEECSSCEEEECCCCSCC-SSCEEEEEEEEEESSCCCCEEEECCCTTCCEEEECSCCSSSEEEECCE
T ss_pred             CCCCCcCCcceEEEecCCCEEEEEEeCCCCC-CCcEEEEEEEEEeCCCCcceeeEeecCCceEEEeCCCCCCCEEEEEEE
Confidence            4577899999999999999999999998754 457999999999887666665555556788999999999999999999


Q ss_pred             EEeCCCCCCCCCCCCceE
Q psy7040         401 AVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~~  418 (716)
                      |.|..|.|.++......+
T Consensus        93 A~n~~G~g~~S~~~~~~T  110 (119)
T 2ed7_A           93 AYNEWGPGESSQPIKVAT  110 (119)
T ss_dssp             EEESSCBCSCCCCEEEEC
T ss_pred             EEcCCccCCCcCCEEEEe
Confidence            999999998887655444

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.32  E-value=6.7e-12  Score=102.59  Aligned_cols=97  Identities=21%  Similarity=0.275  Sum_probs=78.7

Q ss_pred             EecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEE
Q psy7040         317 EAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE  396 (716)
Q Consensus       317 ~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~  396 (716)
                      .+.+....|.+|.++.+...+.+++.|+|.+|...++ .|.+|.|+|+..+...+............+.|.+|.+++.|.
T Consensus        10 ~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   88 (119)
T 1wfn_A           10 LVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYT   88 (119)
T ss_dssp             SCCSSCCSCCCCSCCEEESCCSSEEEEECCCCTTCCS-CCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEE
T ss_pred             EEECCCCCCCCCCceEEEECCCCEEEEEEcCCCCCCC-cEEEEEEEEEECCCCCceEEEEeCCCceEEEEcCCCCCCEEE
Confidence            3444557889999999999999999999999876544 699999999987644333333445678899999999999999


Q ss_pred             EEEEEEeCCCCCCCCCCC
Q psy7040         397 FRVLAVNKGGPGEPSDPT  414 (716)
Q Consensus       397 ~~v~a~n~~g~~~~s~~~  414 (716)
                      |+|+|.|..|.|.++...
T Consensus        89 ~~V~A~n~~G~g~~S~~~  106 (119)
T 1wfn_A           89 IEVAAMTSKGQGQVSAST  106 (119)
T ss_dssp             EEEEEECSSCEEEEEEEE
T ss_pred             EEEEEEcCCccCCCCCCE
Confidence            999999999998877654

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.32  E-value=2.3e-11  Score=99.65  Aligned_cols=93  Identities=29%  Similarity=0.493  Sum_probs=76.9

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCC-CCcEEEecc---cCCCeEEecCCCCCcEEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE-TGVWIPVGK---TREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~---~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      .+.||..+.+..++.+++.|+|+++. +++.+|.+|.|+|+..+ ...|..+..   ...+.++|.+|.+++.|.|||+|
T Consensus        17 ~P~~P~~~~~~~~~~~sv~l~W~p~~-~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   95 (121)
T 1x4z_A           17 PPEAPDRPTISTASETSVYVTWIPRG-NGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRA   95 (121)
T ss_dssp             CCCCCCCCEEEECCSSEEEEECCCCC-CTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEEE
T ss_pred             CCccCCCCEEEEccCCEEEEEEECCC-CCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECCCCCCCEEEEEEEE
Confidence            34556668899999999999999654 57778999999999876 577876643   24589999999999999999999


Q ss_pred             EecCccCCCccccceEEe
Q psy7040         130 LNKEGESEPLETFSSIIA  147 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~~~  147 (716)
                      .|..|.+.++.....++.
T Consensus        96 ~n~~G~s~~S~~~~~v~~  113 (121)
T 1x4z_A           96 LNMLGESEPSAPSRPYVV  113 (121)
T ss_dssp             EETTEECCCCCCCCCEEC
T ss_pred             EcCCCcCCCcCCCCCEEc
Confidence            999999999888765554

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=3e-12  Score=102.40  Aligned_cols=83  Identities=31%  Similarity=0.436  Sum_probs=70.2

Q ss_pred             EEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCCccccce
Q psy7040          65 NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSS  144 (716)
Q Consensus        65 ~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~  144 (716)
                      .++.+++.|+|++|..+ +.+|.+|.|+|+......|..+.....++++|.+|.+++.|.|||+|.|..|.+.+|.....
T Consensus        21 ~~~~~sv~l~W~~p~~~-~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~   99 (110)
T 2db8_A           21 CTHNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL   99 (110)
T ss_dssp             SCSSSEEEECCBCCTTC-CSCCSEEEEEECCSSSSCCEEEEEESCSCEEEECCCSSSCCEEEEEEECSSCBCCCCSCEEC
T ss_pred             ccCCCEEEEEECCCCCC-CCCccEEEEEEEeCCCCceEEEEeCCcCEEEECCCCCCCEEEEEEEEEeCCcCCCCCCCEEE
Confidence            45789999999999754 46799999999887777888776666789999999999999999999999999998877655


Q ss_pred             EEec
Q psy7040         145 IIAR  148 (716)
Q Consensus       145 ~~~~  148 (716)
                      .+..
T Consensus       100 ~T~~  103 (110)
T 2db8_A          100 QTSE  103 (110)
T ss_dssp             CCCC
T ss_pred             EcCC
Confidence            5543

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.31  E-value=3.5e-12  Score=104.78  Aligned_cols=104  Identities=28%  Similarity=0.548  Sum_probs=86.6

Q ss_pred             CCCceeEEEEEEecCCCCCCCCe--EEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEc-cccCcccceEE
Q psy7040         208 NGKDSVEVEVIVLDKPSPPGGPL--KVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPA-GETEGPVTGLE  284 (716)
Q Consensus       208 ~g~~~~~~~~~v~~~p~~p~~~~--~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~~~  284 (716)
                      .|..+.++.+.+.++|.+|.+ +  .+.....+++.|+|.+| .+++.++.+|.|+++..+ ..|..+ .........+.
T Consensus         3 ~G~~~~s~~l~v~~~P~~P~~-~~~~~~~~~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~   79 (121)
T 1wf5_A            3 SGSSGRSAHLRVRQLPHAPEH-PVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENN-APWTVLLASVDPKATSVT   79 (121)
T ss_dssp             CCCCCCCCCSSCCCCCCCCSS-CEEEECSSSTTEEEEECCCC-CCCSSCEEEEEEEEECTT-CCCEEEESSCCTTCCEEE
T ss_pred             CCcccceEEEEEeeCCccCCC-cceeeEeccCCEEEEEEcCC-CCCCCcceEEEEEEEcCC-CCceEeEcccCCCccEEE
Confidence            566777778888899999998 7  67777889999999987 456668999999998765 778766 34445678999


Q ss_pred             EcCCCCCCeEEEEEEEEcCCCCCCCCcccc
Q psy7040         285 VEGLIPNHKYKFRVRAVNKQGKSEPLTTTA  314 (716)
Q Consensus       285 i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~  314 (716)
                      |.+|.|++.|.|+|+|.|..|.+.++....
T Consensus        80 v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~  109 (121)
T 1wf5_A           80 VKGLVPARSYQFRLCAVNDVGKGQFSKDTE  109 (121)
T ss_dssp             EESCCTTCEEEEEEEEEESSCEEEECCCCS
T ss_pred             ECCcCCCCEEEEEEEEEcCCccCCCcCCcc
Confidence            999999999999999999999988877653

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.31  E-value=5.3e-10  Score=116.59  Aligned_cols=315  Identities=10%  Similarity=0.004  Sum_probs=163.3

Q ss_pred             eEEEEec--CCccEEEEeccccCcceEEEEEEEeCCCC------ceeEEEEEEec-CCCCCCCCeEEe----EEeCCeEE
Q psy7040         175 VRKVQHL--DYNTKLGVRMAQRADAGFYTVTAENINGK------DSVEVEVIVLD-KPSPPGGPLKVS----NVHAEGVT  241 (716)
Q Consensus       175 ~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n~~g~------~~~~~~~~v~~-~p~~p~~~~~~~----~~~~~~~~  241 (716)
                      |+.+...  .....|.|.+++..|+|.|.|.+.|..|.      ....+.|.|.. .+.+|.  +...    ...+..+.
T Consensus        68 R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~--i~~~~~~~~~~g~~v~  145 (475)
T 1iga_A           68 RVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPK--VFPLSLCSTQPDGNVV  145 (475)
T ss_pred             ceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCe--EEecCccccCCCCeEE
Confidence            4444432  34578999999999999999999998762      22445677764 223332  2211    13577899


Q ss_pred             EEEECCCCCCCCccceEEEEEEeCCCC-CeEEcc----ccCc---ccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCccc
Q psy7040         242 LDWKVPDDDGGQPIEKYVVDKMDEATG-RWTPAG----ETEG---PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT  313 (716)
Q Consensus       242 l~W~~p~~~~~~~~~~y~v~~~~~~~~-~~~~~~----~~~~---~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~  313 (716)
                      |.|.....   .|.....|.|...+.. .-....    ...+   ....+.|......+.+.|+|.|.|..+... ..  
T Consensus       146 L~C~~~g~---~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~-~~--  219 (475)
T 1iga_A          146 IACLVQGF---FPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ-DV--  219 (475)
T ss_pred             EEEEEeee---cCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCce-ee--
Confidence            99986321   1110112333222110 000000    0000   012467777777788999999999876321 11  


Q ss_pred             ceEEecC----------------CC-CCC----CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc--
Q psy7040         314 ASIEAKN----------------PF-NQP----GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI--  370 (716)
Q Consensus       314 ~~~~~~~----------------~~-~~p----~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~--  370 (716)
                       .+...-                .. ..|    .+|....  ...+..+.|.|......   +.....|.| ......  
T Consensus       220 -~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~--~~~G~~v~L~C~~~g~~---p~~~~~i~W-~~~~~~~~  292 (475)
T 1iga_A          220 -TVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALED--LLLGSEANLTCTLTGLR---DASGVTFTW-TPSSGKSA  292 (475)
T ss_pred             -eEecccccCcccccccccccCCCCCCCcEEEEcCCChHH--hccCCceEEEEEEEccc---CCCceEEEE-CCCCcCCc
Confidence             111000                00 000    0010000  02234455555541110   100012333 111000  


Q ss_pred             e--EEEeeec---CCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEE
Q psy7040         371 W--EKCAQTE---GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFE  445 (716)
Q Consensus       371 ~--~~~~~~~---~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~  445 (716)
                      .  .......   .....+.|.++...+...|.|.|.|..|......   .+.......+|.+.........+..|..+.
T Consensus       293 ~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~---~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~  369 (475)
T 1iga_A          293 VQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTA---TLSKSGNTFRPEVHLLPPPSEELALNELVT  369 (475)
T ss_pred             cccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEE---EeecCCCCCCCeEEEECCChHHhccCCceE
Confidence            0  0000000   0123577888888888999999999887642111   111112234666543323333366788899


Q ss_pred             EEEEEeccCC--CeEEEEeCCeEeccCCcEE----EE---eCC---CeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         446 FDINVIGEPI--PTKEWLCNDITIISKDRFK----IV---NDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       446 ~~~~v~~~p~--~~~~W~~~~~~~~~~~~~~----~~---~~~---~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      |.|.+.+.++  +.+.|++++..+.......    ..   .++   ....|.|......+.|.|+|.|.|....
T Consensus       370 L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          370 LTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             EEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            9999988633  4899999998876543111    11   111   1235677777777899999999998754

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.2e-11  Score=101.02  Aligned_cols=94  Identities=19%  Similarity=0.306  Sum_probs=80.4

Q ss_pred             ecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEE
Q psy7040         318 AKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF  397 (716)
Q Consensus       318 ~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~  397 (716)
                      +.+...+|.+|.++.+...+.+++.|+|.+|..+ + .|.+|.|+|+..+...|............+.|.+|.+++.|.|
T Consensus        11 ~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~-g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   88 (118)
T 2yrz_A           11 SRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCE-R-PLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVF   88 (118)
T ss_dssp             TSSSCSCCCCCCCCEECCCBTTEEEEECCCCCCS-S-CEEEEEEEEEBSSSCCEEEEEESCTTCCEEEEESCCTTCEEEE
T ss_pred             eecCCCCCCCCCceEEEeCCCCEEEEEeCCCCCC-C-CccEEEEEEEECCCCceEEEEcCCCCcCEEEeCCCCCCCEEEE
Confidence            4455678999999999999999999999998765 3 7999999999877667766665556789999999999999999


Q ss_pred             EEEEEeCCCCCCCCCC
Q psy7040         398 RVLAVNKGGPGEPSDP  413 (716)
Q Consensus       398 ~v~a~n~~g~~~~s~~  413 (716)
                      +|+|.|..|.|.++..
T Consensus        89 ~V~A~n~~G~g~~S~~  104 (118)
T 2yrz_A           89 RVRAQSQEGWGREREG  104 (118)
T ss_dssp             EEEEEESSCEEEEEEE
T ss_pred             EEEEEcCCcCCCCcCC
Confidence            9999999999887753

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.30  E-value=2e-11  Score=97.87  Aligned_cols=97  Identities=23%  Similarity=0.420  Sum_probs=77.8

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC-CceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS-PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      .+|.+|..+.+...+.+++.|+|.+|..+++.+|.+|.|+++..+. ..|....  .....++++.+|.+++.|.|+|+|
T Consensus         6 ~~P~~P~~p~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~v~~L~p~t~Y~frV~A   83 (109)
T 1x5x_A            6 SGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKY--DGEDLAYTVKNLRRSTKYKFKVIA   83 (109)
T ss_dssp             CCCCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEE--EESCSEEEEESCCSSCEEEEEEEE
T ss_pred             CCCcCCCCCEEEEccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeE--eCCccEEEECCCCCCCEEEEEEEE
Confidence            4677788888999999999999999887766689999999987664 3455433  234788999999999999999999


Q ss_pred             EeCCCCCCCCCCCCceEeec
Q psy7040         402 VNKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~~~~~  421 (716)
                      .|..|.|.++......+...
T Consensus        84 ~n~~G~s~~S~~~~~~T~~~  103 (109)
T 1x5x_A           84 YNSEGKSNPSEVVEFTTCPD  103 (109)
T ss_dssp             ECSSCEEEECCCEEEECCCC
T ss_pred             EeCCCCcCCccCEEeEeCCC
Confidence            99999988877655444433

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.30  E-value=2.2e-12  Score=133.09  Aligned_cols=293  Identities=14%  Similarity=0.133  Sum_probs=167.2

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEecc-CCC-eE
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-TK  458 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~-p~~-~~  458 (716)
                      ...+.|.++...+.+.|+|.|.|..+.  .+.............+|.+....+ ...+..|..+.|.|.+.+. |.+ .+
T Consensus        77 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~G~~v~L~C~~~g~~P~p~~v  153 (434)
T 1igy_B           77 TANIHLSSLTSDDSAVYYCVREGEVPY--WGQGTTVTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTV  153 (434)
T ss_dssp             BBCEEECSBCGGGCSEECCCCSSSSCC--CCCCEECEECCSCCBCCCEEEECC-CCCCCCTTEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEEECCCChHHCEEEEEEEEccccc--cCCceEEEEccCCCCCCeEEEcCC-ccccCCCCcEEEEEEEeeecCCCeEE
Confidence            457899999999999999999885322  111111222112233454432111 1224689999999999886 666 99


Q ss_pred             EEEeCCeEec--------cCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE-------------
Q psy7040         459 EWLCNDITII--------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-------------  517 (716)
Q Consensus       459 ~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-------------  517 (716)
                      .|++++....        ....+..     ...|.|.+....| |.|+|.|.|..|.......+.+.             
T Consensus       154 ~W~k~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~  227 (434)
T 1igy_B          154 TWNSGSLSSGVHTFPAVLQSDLYTL-----SSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPE  227 (434)
T ss_dssp             EETTTTBCSSEEECCCEECSSCEEE-----EEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSS
T ss_pred             EEeeCCcCCCeEecCceecCCcEEE-----EEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCc
Confidence            9999886521        0111211     2368899998888 99999999999875544433221             


Q ss_pred             EEEEEEeCCC-----CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec------ccc----ceeEEEEcCCCCCCe
Q psy7040         518 GCSLKWNPPE-----DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID------NVD----YFTKITIRPLQRSDT  582 (716)
Q Consensus       518 ~v~l~W~~p~-----~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~------~~~----~~~~~~i~~L~~~~~  582 (716)
                      ...+.-.+|.     ..+......|.+.......+.+.+.|++.+.......      ..+    ....+.|.++...+.
T Consensus       228 ~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  307 (434)
T 1igy_B          228 VSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNG  307 (434)
T ss_dssp             SCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHT
T ss_pred             CcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCC
Confidence            0122222332     2233334455554221000123489998775432110      000    123577788877888


Q ss_pred             EEEEEEEEcCCCCCccceeee----ccCCCCCCcc---ceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEe
Q psy7040         583 AQYTVTATNSQGKDQVFIEVV----VTDKPSAPEG---PIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRV  655 (716)
Q Consensus       583 y~~~v~a~n~~G~~~~s~~~~----v~~~p~~~~~---~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~  655 (716)
                      +.|+|.|.|..|.......+.    +..+|..-..   ...+.+..+.|.|.+.|+.-.        .-.+.|+++|..+
T Consensus       308 G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~--------~~~v~W~k~g~~l  379 (434)
T 1igy_B          308 KEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPE--------DITVEWQSDGQAP  379 (434)
T ss_dssp             CCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCS--------CEEEEEEETTSCC
T ss_pred             CcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECC--------CeEEEEEECCEec
Confidence            999999999988654333332    2233321000   011223446655554443100        0068999999877


Q ss_pred             eecc------c--c---eeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         656 TIDN------V--D---YFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       656 ~~~~------~--~---~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      ....      .  +   ....|.|.....++.|.|+|.|.|.....
T Consensus       380 ~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  425 (434)
T 1igy_B          380 ENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHN  425 (434)
T ss_dssp             SCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSGG
T ss_pred             CCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCCC
Confidence            4320      1  1   11356677776778999999999976543

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.30  E-value=4.3e-11  Score=97.29  Aligned_cols=96  Identities=21%  Similarity=0.284  Sum_probs=79.8

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .+|.+|.++.+...+.+++.|+|.+|...+ +.+.+|.|+++..+...|..   ......++.|.+|.+++.|.|+|+|.
T Consensus        16 ~~P~~P~~l~~~~~~~~si~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A~   91 (116)
T 1x5g_A           16 QLPGPAPNLRAYAASPTSITVTWETPVSGN-GEIQNYKLYYMEKGTDKEQD---VDVSSHSYTINGLKKYTEYSFRVVAY   91 (116)
T ss_dssp             SCCCCCSSCEEEEEETTEEEEECCCCSCCS-SCCSEEEEEEEETTCCCCCC---EEECSSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCcCCCccEEEecCCCEEEEEEeCCCCCC-CcccEEEEEEEECCCCccEE---EecCCceEEEcCCCCCCEEEEEEEEE
Confidence            578899999999999999999999987544 47999999999877555532   23467899999999999999999999


Q ss_pred             eCCCCCCCCCCCCceEeecC
Q psy7040         403 NKGGPGEPSDPTAPHIARAK  422 (716)
Q Consensus       403 n~~g~~~~s~~~~~~~~~~~  422 (716)
                      |..|.|.++......+....
T Consensus        92 n~~G~g~~S~~~~~~T~~~~  111 (116)
T 1x5g_A           92 NKHGPGVSTPDVAVRTLSDS  111 (116)
T ss_dssp             CSSCCCCBCCCCCEECCCSS
T ss_pred             cCCCcCCCCCCEEEECCCCC
Confidence            99999998887766665443

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.30  E-value=6.9e-12  Score=125.31  Aligned_cols=234  Identities=13%  Similarity=0.033  Sum_probs=118.5

Q ss_pred             ccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCC----CeEEeEEeCCeEEEEEECCCCC-CCCccceE
Q psy7040         184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGG----PLKVSNVHAEGVTLDWKVPDDD-GGQPIEKY  258 (716)
Q Consensus       184 ~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~----~~~~~~~~~~~~~l~W~~p~~~-~~~~~~~y  258 (716)
                      ...|.|.+++..|+|.|+|.|.|..|.....+.|.|..+|.....    +.......++.+.|.|...... .+.+...+
T Consensus        78 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v  157 (349)
T 4dep_C           78 KDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTI  157 (349)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEE
T ss_pred             CCEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceE
Confidence            468999999999999999999999998888899999876643322    1234455678899999753221 22233333


Q ss_pred             EEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeC
Q psy7040         259 VVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDT  338 (716)
Q Consensus       259 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~  338 (716)
                      .+..  .+... ............+.|.++...+.+.|.|.|.|..+..... ..                         
T Consensus       158 ~W~k--~~~~l-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~-~~-------------------------  208 (349)
T 4dep_C          158 TWYM--GCYKI-QNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFH-LT-------------------------  208 (349)
T ss_dssp             EEEE--TTEEC-CSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEE-EE-------------------------
T ss_pred             EEee--CCEEC-CCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEE-EE-------------------------
Confidence            3322  11100 0000001223679999999999999999999854211000 00                         


Q ss_pred             CeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceE
Q psy7040         339 DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       339 ~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~  418 (716)
                      ..+.|.-..+..                             .                                      
T Consensus       209 ~~~~l~v~~~~~-----------------------------~--------------------------------------  221 (349)
T 4dep_C          209 RTLTVKVVGSPK-----------------------------N--------------------------------------  221 (349)
T ss_dssp             EEEEEEEECCGG-----------------------------G--------------------------------------
T ss_pred             EEEEEEEEccCC-----------------------------C--------------------------------------
Confidence            000110000000                             0                                      


Q ss_pred             eecCCCCCccccccccc-EEEecCCeEEEEEEEe----ccCCCeEEEEeCCeEecc-CCcEEEEe-------CC--CeEE
Q psy7040         419 ARAKKVSPYINRDQLSD-IKVRAGSNFEFDINVI----GEPIPTKEWLCNDITIIS-KDRFKIVN-------DD--KSTK  483 (716)
Q Consensus       419 ~~~~~~~P~~~~~~~~~-~~~~~g~~~~~~~~v~----~~p~~~~~W~~~~~~~~~-~~~~~~~~-------~~--~~~~  483 (716)
                          ..+|.+....... +.+..|..+.|.|.+.    +.|.+.+.|++++..+.. ..++.+..       .+  ....
T Consensus       222 ----~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (349)
T 4dep_C          222 ----AVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQI  297 (349)
T ss_dssp             ----CCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEEC
T ss_pred             ----CCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEE
Confidence                0011111000001 2466788889999998    578899999999987754 22221100       11  1334


Q ss_pred             EEECCCCCCCc-eeEEEEEEcCCCceeeEEEEEEE
Q psy7040         484 LKVFDSKRGDS-GIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       484 l~i~~l~~~~~-~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      |.|.++...|. |.|+|.|.|..|....++.+.+.
T Consensus       298 L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  332 (349)
T 4dep_C          298 LSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK  332 (349)
T ss_dssp             C-------------CEEEEECSSCEEEEECC----
T ss_pred             EEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeee
Confidence            99999999999 99999999999988877666554

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.9e-11  Score=97.87  Aligned_cols=95  Identities=16%  Similarity=0.224  Sum_probs=76.1

Q ss_pred             CCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC---CceEEEeeecCCCCeEEecCCCCCCeEEE
Q psy7040         321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS---PIWEKCAQTEGDTPKGKVLDLIEGNQYEF  397 (716)
Q Consensus       321 ~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~  397 (716)
                      ...+|.+|.++.+...+.+++.|+|.+|... ++.|.+|.|+|+..+.   ..+...   ......+.|.+|.|++.|.|
T Consensus         4 ~~~~P~~p~~l~~~~~~~~sv~l~W~~p~~~-~g~i~~Y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~   79 (109)
T 2e7h_A            4 GSSGPPAVSDIRVTRSSPSSLSLAWAVPRAP-SGAVLDYEVKYHEKGAEGPSSVRFL---KTSENRAELRGLKRGASYLV   79 (109)
T ss_dssp             SCCSSCCCCCCEEEEEETTEEEEECCCCCCS-SSCCCEEEEEEEETTCCSTTTSEEE---EESSSEEEEESCCTTSCEEE
T ss_pred             CCCCCCCCCccEEEecCCCEEEEEeCCCCCC-CCcEeEEEEEEEECCCCCCceeEEE---ccCCCEEEECCCCCCCeEEE
Confidence            3467888999999999999999999998754 4479999999987651   223222   34567999999999999999


Q ss_pred             EEEEEeCCCCCCCCCCCCceEe
Q psy7040         398 RVLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       398 ~v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      +|+|.|..|.|.+|....+.+.
T Consensus        80 ~V~A~n~~G~g~~S~~~~~~T~  101 (109)
T 2e7h_A           80 QVRARSEAGYGPFGQEHHSQTQ  101 (109)
T ss_dssp             EEEEECSSCBCCCCSCEECCCC
T ss_pred             EEEEEeCCccCCCCCCEEEEcC
Confidence            9999999999998876554443

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.30  E-value=1.9e-10  Score=112.68  Aligned_cols=125  Identities=8%  Similarity=-0.001  Sum_probs=89.9

Q ss_pred             eEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCC-eEEEE
Q psy7040         383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWL  461 (716)
Q Consensus       383 ~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~-~~~W~  461 (716)
                      .+.+......+...|+|.|.|..+....+..    .......+|.+.........+..|..+.|.|.+.|.|.+ .+.|+
T Consensus       178 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~----~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~  253 (313)
T 4fqp_A          178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLT----VNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWS  253 (313)
T ss_dssp             EEEECCCGGGTTCEEEEEEECTTSSSCEEEE----EECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEE
T ss_pred             eeeecccccccCeeEEEEEEccCcCccceee----eecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEE
Confidence            3566666666777899999998765432211    111222355554444455567788999999999999998 69999


Q ss_pred             eCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         462 CNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      +++..+....  .. .   ...|.|.++...|.|.|+|.|.|..|..+.++.+.|.
T Consensus       254 ~~~~~l~~~~--~~-~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          254 TTMGPLPPFA--VA-Q---GAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             ETTBSCCTTE--EE-E---TTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ECCEECCCce--EE-e---CCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            9998875432  11 1   2379999999999999999999999988877766654

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.30  E-value=5.4e-12  Score=101.27  Aligned_cols=99  Identities=23%  Similarity=0.324  Sum_probs=79.5

Q ss_pred             EEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCC---CCc-cceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCC
Q psy7040         216 EVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDG---GQP-IEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPN  291 (716)
Q Consensus       216 ~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~---~~~-~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  291 (716)
                      .+.+..+|.+|..| .+..+..++++|+|++|.+++   +.+ |..|.|+........|..+..  +..+.++|.+|.|+
T Consensus         9 ~~~~~~pp~~P~~p-~v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~~~~~v~~--~~~t~~~v~gL~p~   85 (120)
T 1wfu_A            9 EPHKVVPLSKPHPP-VVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT--GYATRHVVEGLEPR   85 (120)
T ss_dssp             CCTTCCCCCCCCCC-BCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEE--ESCSEEEEESCCTT
T ss_pred             EEEeeCCCCCCCCc-eeceEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCCceEEEec--CCccEEEECCCCCC
Confidence            34556778888874 677889999999999988776   666 899999965556678887755  33578999999999


Q ss_pred             CeEEEEEEEEcCCCCCCCCcccceEE
Q psy7040         292 HKYKFRVRAVNKQGKSEPLTTTASIE  317 (716)
Q Consensus       292 ~~y~~~v~a~n~~g~~~~~~~~~~~~  317 (716)
                      +.|.|+|+|.|..|.+.++......+
T Consensus        86 t~Y~frV~A~n~~G~s~~S~~~~~~T  111 (120)
T 1wfu_A           86 TLYKFRLKVTSPSGEYEYSPVVSVAT  111 (120)
T ss_dssp             CEEEEEEEEECSSSCEEECCCEEEEC
T ss_pred             CEEEEEEEEECCCCCCCCCccEeeEc
Confidence            99999999999999998777654333

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.30  E-value=1.2e-10  Score=120.35  Aligned_cols=252  Identities=13%  Similarity=0.117  Sum_probs=149.6

Q ss_pred             cEEEecCCeEEEEEEEeccC--CCeEEEEeCC--eEec-----------------cCCcEEEEeC--CCeEEEEECCCCC
Q psy7040         435 DIKVRAGSNFEFDINVIGEP--IPTKEWLCND--ITII-----------------SKDRFKIVND--DKSTKLKVFDSKR  491 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p--~~~~~W~~~~--~~~~-----------------~~~~~~~~~~--~~~~~l~i~~l~~  491 (716)
                      .+.+..|+.+.|.|.+.+.+  .+.+.|++..  ....                 ...++.+..+  .....|.|.++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (444)
T 1igt_B            9 GGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKS   88 (444)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCH
Confidence            46789999999999998764  5789998753  2110                 1235555543  3467899999999


Q ss_pred             CCceeEEEEEEcCCCce---eeEEEEEEE-----EEEEEEeCCC---CCCCCceeeEEEEEEecCCCce-eeeEEEccce
Q psy7040         492 GDSGIYTLAVKNSWGTD---KGTAKVTVL-----GCSLKWNPPE---DDGGAPIEYYMVEKMETDTGKV-LIKWIRTNDK  559 (716)
Q Consensus       492 ~~~~~y~~~a~n~~g~~---~~s~~~~v~-----~v~l~W~~p~---~~~~~~i~~y~v~~~~~~~~~~-~~~w~~~~~~  559 (716)
                      .|.|.|.|.|.|..+..   .....+.+.     ...+.-..+.   ..++.....|.+....   +.+ .+.|++.+..
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~---P~p~~v~W~~~~~~  165 (444)
T 1igt_B           89 EDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYF---PEPVTLTWNSGSLS  165 (444)
T ss_dssp             GGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEB---SSCCEEEEGGGTBC
T ss_pred             HHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEccee---CCCcEEEEecCCCC
Confidence            99999999999986541   122344443     1111111211   2233334455554331   122 4899877654


Q ss_pred             eeeec----c-cc---ceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeecc---------------CCCCCCcc---
Q psy7040         560 RVTID----N-VD---YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT---------------DKPSAPEG---  613 (716)
Q Consensus       560 ~~~~~----~-~~---~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~---------------~~p~~~~~---  613 (716)
                      .....    . ..   ....+.|......+ +.|+|.|.|..|.......+.+.               .....|..   
T Consensus       166 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~  244 (444)
T 1igt_B          166 SGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIF  244 (444)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEE
T ss_pred             CCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEec
Confidence            21000    0 00   12457788888778 99999999998864332222110               11111210   


Q ss_pred             ---cee--eccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeeccc-----------ceeeEEEEccCCCCCcE
Q psy7040         614 ---PIQ--WLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNV-----------DYFTKITIRPLQRSDTA  677 (716)
Q Consensus       614 ---~~~--~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~-----------~~~~~~~i~~l~~~~~y  677 (716)
                         ...  ..+..+.|.+.+.|+.-.      +-.-.+.|+++|..+.....           .....|.|.++..+|.|
T Consensus       245 ~p~~~~~~~~G~~~~L~C~~~g~~~~------p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G  318 (444)
T 1igt_B          245 PPKIKDVLMISLSPIVTCVVVDVSED------DPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGK  318 (444)
T ss_dssp             CCCHHHHHCTTSCCEEEEEEEEECTT------CCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTC
T ss_pred             CCchhheeecCCCcEEEEEEeecccC------CCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCC
Confidence               111  235567777665544100      00016899999987653310           12358999999999999


Q ss_pred             EEEEEEEcCCCCceeeEEE
Q psy7040         678 QYTVTATNSQGKDQVFIEV  696 (716)
Q Consensus       678 ~y~~~a~n~~G~~~~s~~l  696 (716)
                      .|+|.|.|..|.......+
T Consensus       319 ~Y~C~a~n~~~~~~~~~~v  337 (444)
T 1igt_B          319 EFKCKVNNKDLPAPIERTI  337 (444)
T ss_dssp             EEEEEEECTTCSSCEEEEE
T ss_pred             cEEEEEEcCCCCCceEEEE
Confidence            9999999999987444444

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.29  E-value=2.1e-11  Score=96.62  Aligned_cols=92  Identities=25%  Similarity=0.393  Sum_probs=82.1

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      ||.|. ..+.++.+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+..++....|.|.++...|.|.|+|.|.|.
T Consensus        13 pP~f~-~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           13 PPCFL-RFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEE-eCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            55554 34567899999999999999999999999999999999889999888888899999999999999999999999


Q ss_pred             CCceeeEEEEEEE
Q psy7040         505 WGTDKGTAKVTVL  517 (716)
Q Consensus       505 ~g~~~~s~~~~v~  517 (716)
                      .|....++.+.|.
T Consensus        92 ~G~~~~~~~l~V~  104 (107)
T 3knb_B           92 AGEAYAAAAVTVL  104 (107)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9998888777664

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.29  E-value=3.7e-09  Score=110.89  Aligned_cols=306  Identities=11%  Similarity=0.059  Sum_probs=164.0

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCC-----------CCCCCCCCCceEeecCCCCCcccccccccE-EEecCCeEEEEE
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGG-----------PGEPSDPTAPHIARAKKVSPYINRDQLSDI-KVRAGSNFEFDI  448 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g-----------~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~-~~~~g~~~~~~~  448 (716)
                      ..++.|.++++.+...|.|.+.+..+           ..................+|.+........ .+ .+..+.|.|
T Consensus        79 ~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~-~~~~v~L~C  157 (512)
T 1zvo_C           79 QFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPK-DNSPVVLAC  157 (512)
T ss_pred             EEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCccccc-CCCeEEEEE
Confidence            46899999999999999999988653           001111111111112234555442111111 22 357899999


Q ss_pred             EEecc-CCC-eEEEEeCCeEecc-CCcEEEEeCCC---eEEEEECCCCCCCceeEEEEEEcCCCceeeEE----------
Q psy7040         449 NVIGE-PIP-TKEWLCNDITIIS-KDRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA----------  512 (716)
Q Consensus       449 ~v~~~-p~~-~~~W~~~~~~~~~-~~~~~~~~~~~---~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~----------  512 (716)
                      .+.+. |.+ .+.|++++..... .........+.   ...|.|.....+ .+.|+|.|.|..|......          
T Consensus       158 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~  236 (512)
T 1zvo_C          158 LITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQ  236 (512)
T ss_pred             EEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcC
Confidence            99876 655 8999996543210 00000111111   235788777776 8999999999988655433          


Q ss_pred             -EEEEE-----------------------------------------------------EEEEEEeCCCC----CCCCce
Q psy7040         513 -KVTVL-----------------------------------------------------GCSLKWNPPED----DGGAPI  534 (716)
Q Consensus       513 -~~~v~-----------------------------------------------------~v~l~W~~p~~----~~~~~i  534 (716)
                       .+.+.                                                     ...+.-.+|..    .+....
T Consensus       237 ~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~  316 (512)
T 1zvo_C          237 ASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKAT  316 (512)
T ss_pred             CEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceE
Confidence             11111                                                     01111222211    122333


Q ss_pred             eeEEEEEEecCCCceeeeEEEccceee-eec----c--ccc----eeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee
Q psy7040         535 EYYMVEKMETDTGKVLIKWIRTNDKRV-TID----N--VDY----FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  603 (716)
Q Consensus       535 ~~y~v~~~~~~~~~~~~~w~~~~~~~~-~~~----~--~~~----~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~  603 (716)
                      ..|.+......  ...+.|++.+.... ...    .  .+.    ...+.|......+...|+|.|.|..+... ...+.
T Consensus       317 L~C~v~g~~P~--~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~  393 (512)
T 1zvo_C          317 FTCFVVGSDLK--DAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMAL  393 (512)
T ss_pred             EEEEEeceECC--CeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEE
Confidence            44544332111  12489999876432 100    0  011    13467777777788999999999887654 33332


Q ss_pred             -ccCC--CCCCccceee----ccceeE-EEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeecc----------cc--ee
Q psy7040         604 -VTDK--PSAPEGPIQW----LLTLTD-VTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDN----------VD--YF  663 (716)
Q Consensus       604 -v~~~--p~~~~~~~~~----~~~~v~-l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~----------~~--~~  663 (716)
                       ....  +..|. +...    .+..+. |.+.+.||.-.        .-.+.|+++|.++....          .+  +.
T Consensus       394 ~~~~~~~~~~p~-v~~~~~~~~~~~~~~L~C~~~g~~P~--------~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~  464 (512)
T 1zvo_C          394 REPAAQAPVKLS-LNLLASSDPPEAASWLLCEVSGFSPP--------NILLMWLEDQREVNTSGFAPARPPPQPGSTTFW  464 (512)
T ss_pred             eecCCCCCCCCE-EEEEccCcCCCCceEEEEEEeeeCCC--------CcEEEEEECCeECcCccccccceeECCCCCEEE
Confidence             2221  22333 2222    123344 55444443110        00579999998875431          11  11


Q ss_pred             --eEEEEccCCCCCcEEEEEEEEcCCCCce--eeEEEEEec
Q psy7040         664 --TKITIRPLQRSDTAQYTVTATNSQGKDQ--VFIEVVVTD  700 (716)
Q Consensus       664 --~~~~i~~l~~~~~y~y~~~a~n~~G~~~--~s~~l~v~~  700 (716)
                        ..|.|.....++.|.|+|.|.|......  ...+|.|..
T Consensus       465 ~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~~  505 (512)
T 1zvo_C          465 AWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVSY  505 (512)
T ss_pred             EEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEecc
Confidence              3456666666679999999999877653  444555544

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.29  E-value=1.1e-10  Score=112.95  Aligned_cols=220  Identities=12%  Similarity=0.017  Sum_probs=127.7

Q ss_pred             cceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCc---EEEeeeCCeEEEEecCCCCCCCccc
Q psy7040         280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP---EIKDFDTDFVELAWTPPEQNGGSPI  356 (716)
Q Consensus       280 ~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~---~~~~~~~~~i~l~W~~p~~~~~~~i  356 (716)
                      ...+.|.++...+.+.|+|.|.|..|..........+.+..+ ..|..+...   .+....+..+.|.|... .+    .
T Consensus        50 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p-~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p----~  123 (289)
T 3mjg_X           50 SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDP-TVGFLPNDAEELFIFLTEITEITIPCRVT-DP----Q  123 (289)
T ss_dssp             EEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCT-TCCBCCCCHHHHEEEESSCCCEEECCCBS-CT----T
T ss_pred             eEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECC-CcCcccCCCCcceEEeecCCeEEEEeEcC-CC----C
Confidence            468999999999999999999998775322222222222211 112111111   14445667899999874 11    1


Q ss_pred             eEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccE
Q psy7040         357 VGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDI  436 (716)
Q Consensus       357 ~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~  436 (716)
                      ....+.+...+ ....  ... .....+.    .+.+...|+|.|.|..+...... . ....... .+|.+... +...
T Consensus       124 ~~v~w~~~~~~-~~~~--~~~-~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~-~-~l~v~~~-~~p~i~~~-~~~~  191 (289)
T 3mjg_X          124 LVVTLHEKKGD-VALP--VPY-DHQRGFS----GIFEDRSYICKTTIGDREVDSDA-Y-YVYRLQV-SSINVSVN-AVQT  191 (289)
T ss_dssp             SCEEEEESSCC-SCCC--CCE-ETTTEEE----ECCCSSEEEEEEEETTEEEECCC-E-EEEECCC-CCCCCEEE-ESCS
T ss_pred             ceEEEEeCCCC-Cccc--eee-cCCcCee----eeccCcEEEEEEEeCCceeeeee-E-EEEecCC-CCCCcEEe-CCcc
Confidence            12333332211 1000  000 1111222    23456788999987665432221 1 1122111 34444322 2346


Q ss_pred             EEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCc-EEEEe----CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVN----DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~-~~~~~----~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      .+..|+.+.|.|.+.+.|.+.+.|++++........ .....    ......|.|.++...|.|.|+|.|.|..|....+
T Consensus       192 ~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  271 (289)
T 3mjg_X          192 VVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDE  271 (289)
T ss_dssp             EEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEE
T ss_pred             eeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeE
Confidence            688999999999999999999999987655432221 11111    1235689999999999999999999999999998


Q ss_pred             EEEEEE
Q psy7040         512 AKVTVL  517 (716)
Q Consensus       512 ~~~~v~  517 (716)
                      ..+.+.
T Consensus       272 ~~l~v~  277 (289)
T 3mjg_X          272 KAINIT  277 (289)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888776

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.29  E-value=4.5e-11  Score=93.53  Aligned_cols=92  Identities=34%  Similarity=0.630  Sum_probs=80.0

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCC--cEEEEeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      ||.|. ..+.++.+.+|+.+.|.|.+.|.|.+.+.|++++..+....  ++.+...+....|.|.++...|.|.|+|.|.
T Consensus         5 PP~i~-~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A            5 PPKIE-ALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             EEEEC-CCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEE-eCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            55554 34667899999999999999999999999999999986543  5777788888899999999999999999999


Q ss_pred             cCCCceeeEEEEEEE
Q psy7040         503 NSWGTDKGTAKVTVL  517 (716)
Q Consensus       503 n~~g~~~~s~~~~v~  517 (716)
                      |..|..+.++.+.|.
T Consensus        84 N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           84 NEFGSDSATVNIHIR   98 (100)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEEE
Confidence            999998888887765

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.29  E-value=2.2e-11  Score=99.87  Aligned_cols=94  Identities=30%  Similarity=0.544  Sum_probs=79.4

Q ss_pred             CCCCCCCCc--EEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEE-eeecCCCCeEEecCCCCCCeEEEEE
Q psy7040         323 NQPGKPGTP--EIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKC-AQTEGDTPKGKVLDLIEGNQYEFRV  399 (716)
Q Consensus       323 ~~p~~p~~~--~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~Y~~~v  399 (716)
                      ..|.+|.++  .+...+.+++.|+|.+| .+++.+|.+|.|+++..+ ..|... ........++.+.+|.+++.|.|+|
T Consensus        16 ~~P~~P~~~~~~~~~~~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV   93 (121)
T 1wf5_A           16 QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENN-APWTVLLASVDPKATSVTVKGLVPARSYQFRL   93 (121)
T ss_dssp             CCCCCCSSCEEEECSSSTTEEEEECCCC-CCCSSCEEEEEEEEECTT-CCCEEEESSCCTTCCEEEEESCCTTCEEEEEE
T ss_pred             eCCccCCCcceeeEeccCCEEEEEEcCC-CCCCCcceEEEEEEEcCC-CCceEeEcccCCCccEEEECCcCCCCEEEEEE
Confidence            568899999  78888899999999997 456668999999999876 778766 4456678899999999999999999


Q ss_pred             EEEeCCCCCCCCCCCCceE
Q psy7040         400 LAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       400 ~a~n~~g~~~~s~~~~~~~  418 (716)
                      +|.|..|.|.++.....++
T Consensus        94 ~A~n~~G~s~~S~~~~~~~  112 (121)
T 1wf5_A           94 CAVNDVGKGQFSKDTERVS  112 (121)
T ss_dssp             EEEESSCEEEECCCCSCEE
T ss_pred             EEEcCCccCCCcCCcceeE
Confidence            9999999998888764443

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.28  E-value=1.1e-11  Score=98.29  Aligned_cols=87  Identities=23%  Similarity=0.347  Sum_probs=70.2

Q ss_pred             CCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEE----Eecc-cCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          59 GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI----PVGK-TREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        59 ~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~----~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      ..+.+...+.+ +.|+|++|..++|.+|.+|.|+|+..+...|.    .+.. ...++++|.+|.|++.|.|+|+|.|..
T Consensus        11 ~~~~~~~~~~~-v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~   89 (105)
T 2haz_A           11 SIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGK   89 (105)
T ss_dssp             EEEEEEECSSC-EEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCEEEEcCCc-EEEEEcCCcccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCEEEEEEEEEcCC
Confidence            44566666766 99999999877888899999999988776674    2221 134899999999999999999999999


Q ss_pred             ccCCCccccceEE
Q psy7040         134 GESEPLETFSSII  146 (716)
Q Consensus       134 g~~~~s~~~~~~~  146 (716)
                      |.+.+|......+
T Consensus        90 G~g~~S~~~~~~T  102 (105)
T 2haz_A           90 GLGEISAASEFKT  102 (105)
T ss_dssp             EECCCCCCEEEEC
T ss_pred             ccCCCcCCEeeEE
Confidence            9999987766544

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A

Probab=99.28  E-value=6.7e-11  Score=109.10  Aligned_cols=172  Identities=15%  Similarity=0.118  Sum_probs=117.4

Q ss_pred             CCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc------CcccceEEE--cCCCCCCeEE
Q psy7040         224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET------EGPVTGLEV--EGLIPNHKYK  295 (716)
Q Consensus       224 ~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~------~~~~~~~~i--~~L~p~~~y~  295 (716)
                      ..|.+ +.+.......+.++|+++.. .+.....|.+.+...+ ..|..|...      ......+.+  .++..+..|.
T Consensus        22 ~~P~n-l~C~~~~~~~l~C~W~~~~~-~~~~~~~y~l~y~~~~-~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~~~y~   98 (227)
T 1eer_B           22 RGPEE-LLCFTERLEDLVCFWEEAAS-AGVGPGQYSFSYQLED-EPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLE   98 (227)
T ss_dssp             HSTTS-CEEEBSSSSCCEEEEEESCC-SSCCTTSEEEEEEETT-SCCEEECEEEEEETTTEEEEEEECCGGGCCBSSCEE
T ss_pred             cCCcC-CeEECCCCCEEEEEecCCCC-CCCCCccEEEEEEcCC-CCceeccceeccCCCCCceEEEEeCCCcceeeEEEE
Confidence            35677 78887788899999997664 3324678999887653 335444211      112233343  5678889999


Q ss_pred             EEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeee-CCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEE
Q psy7040         296 FRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFD-TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKC  374 (716)
Q Consensus       296 ~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~-~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~  374 (716)
                      |+|.|.+..+.     ....+. ......|.+|.++.+.... .+.+.|+|.+|.......+..|.|.|+..+...|...
T Consensus        99 ~~V~a~~~~~~-----~~~~~~-~~~~v~p~pP~~l~~~~~~~~~~l~v~W~~P~~~~~~~~l~Yev~y~~~~~~~w~~~  172 (227)
T 1eer_B           99 LRVTAASGAPR-----YHRVIH-INEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQR  172 (227)
T ss_dssp             EEEEETTSCEE-----EEEEEC-GGGSEECCCCEEEEEEECSSTTCEEEEEECCSSCSCGGGEEEEEEEECCSSSCCCCE
T ss_pred             EEEEecCCCcc-----EEEEEE-eeeeEccCcCcceEEEEcCCCCeEEEEEcCCCCcccccceEEEEEEEcCCCCCcEEE
Confidence            99999653321     111111 1122358899999988764 7899999999765322237899999998765667543


Q ss_pred             eeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         375 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       375 ~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      .........+.|.+|.+++.|.|+|+|...
T Consensus       173 ~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~  202 (227)
T 1eer_B          173 VEILEGRTECVLSNLRGRTRYTFAVRARMA  202 (227)
T ss_dssp             EEECTTCCEEEECCCCSSCEEEEEEEEEEC
T ss_pred             EEEecCceEEEEcccCCCCeEEEEEEEeEC
Confidence            333456788999999999999999999975

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.28  E-value=8.6e-12  Score=98.76  Aligned_cols=90  Identities=22%  Similarity=0.294  Sum_probs=73.4

Q ss_pred             CCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       321 ~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      +..+|.+|..+.+. .+.+++.|+|.+ ..++|.+|.+|.|+|+..++..|......+....++.|.+|.+++.|+|+|.
T Consensus         5 p~~~P~pP~~~~~~-~~~~sv~L~W~p-~~dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~frV~   82 (114)
T 2kbg_A            5 SMREPSPPSIHGQP-SSGKSFKLSITK-QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQIT   82 (114)
T ss_dssp             --CCCCSCCEECCB-CSTTCEEEEECC-CCCSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECCCCTTCCEEEEEE
T ss_pred             CCCCccCCcccccc-cCCCEEEEEEEC-CCCCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcCCCCCCEEEEEEE
Confidence            33567777655433 688999999996 4578889999999999987666766666667788999999999999999999


Q ss_pred             EEeCCCCCCCCC
Q psy7040         401 AVNKGGPGEPSD  412 (716)
Q Consensus       401 a~n~~g~~~~s~  412 (716)
                      |.|..|.|.++.
T Consensus        83 A~N~~G~s~pS~   94 (114)
T 2kbg_A           83 AANRLGYSEPTV   94 (114)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EEeCCcCcCCcC
Confidence            999999998765

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=3.7e-11  Score=100.71  Aligned_cols=107  Identities=18%  Similarity=0.263  Sum_probs=81.5

Q ss_pred             EecCCCCCCC-CCCCcEEEeeeCCeEEEEecCCC-CCCCccceEEEEEEeecCCCc--eEEEeeecCCCCeEEecCCCCC
Q psy7040         317 EAKNPFNQPG-KPGTPEIKDFDTDFVELAWTPPE-QNGGSPIVGYIIEKKEKYSPI--WEKCAQTEGDTPKGKVLDLIEG  392 (716)
Q Consensus       317 ~~~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~p~-~~~~~~i~~y~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~~  392 (716)
                      .+.+....|. +|.++.+...+.+++.|+|.+|. ...++.|.+|.|+|+..+...  +...........++.|.+|.++
T Consensus        10 ~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   89 (134)
T 2edx_A           10 EARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKW   89 (134)
T ss_dssp             CCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEESCCTT
T ss_pred             EEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccEEEeCCCCCC
Confidence            3444556676 78899999999999999999973 234457999999998766433  2333333567899999999999


Q ss_pred             CeEEEEEEEEeCCCCCCCCCCCCceEeecCC
Q psy7040         393 NQYEFRVLAVNKGGPGEPSDPTAPHIARAKK  423 (716)
Q Consensus       393 ~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~  423 (716)
                      +.|.|+|+|.|..|.|.++......+....+
T Consensus        90 t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P  120 (134)
T 2edx_A           90 TEYRVWVRAHTDVGPGPESSPVLVRTDEDVP  120 (134)
T ss_dssp             CEEEEEEEEEETTBCCCCCCCEEEECCCCSS
T ss_pred             CEEEEEEEEEcCCCcCCCCCCEEeecCCCCC
Confidence            9999999999999999888765555544443

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.27  E-value=1.8e-11  Score=97.89  Aligned_cols=95  Identities=22%  Similarity=0.342  Sum_probs=77.1

Q ss_pred             CCCCCCCCcEEEe--eeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         323 NQPGKPGTPEIKD--FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       323 ~~p~~p~~~~~~~--~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      ..|.+|.++.+..  .+.+++.|+|.+|.. .++.|.+|.|+|+..+...|....   .....+.|.+|.+++.|.|+|+
T Consensus         6 ~~P~~P~~l~~~~~~~~~~sv~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~l~~L~p~t~Y~~~V~   81 (108)
T 2dm4_A            6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIH-THGLIREYIVEYSRSGSKMWASQR---AASNFTEIKNLLVNTLYTVRVA   81 (108)
T ss_dssp             CCTTSCEEEEEECCTTCSSCEEEEEECCSC-CSSCEEEEEEEEEETTCSCCEEEE---ESSSEEEECSCCSSCEEEEEEE
T ss_pred             CCCcCCcCeEEEEeccCCCEEEEEEcCCCC-CCCcEEEEEEEEEECCCCCeEEec---CCccEEEeCCCCCCCEEEEEEE
Confidence            5688899998776  578899999999874 455799999999988766776543   3467999999999999999999


Q ss_pred             EEeCCCCCCCCCCCCceEeec
Q psy7040         401 AVNKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~~~~~  421 (716)
                      |.|..|.|.+|......+...
T Consensus        82 A~n~~G~g~~S~~~~~~T~~~  102 (108)
T 2dm4_A           82 AVTSRGIGNWSDSKSITTIKG  102 (108)
T ss_dssp             EEESSCEEEECCCEEEECCSC
T ss_pred             EECCCceeCCCCCEEEECCCC
Confidence            999999998887655544333

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.27  E-value=8e-12  Score=104.42  Aligned_cols=104  Identities=19%  Similarity=0.316  Sum_probs=82.2

Q ss_pred             EecCCCCCCC-CCCCcEEEeeeCCeEEEEecCCCCC-CCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCe
Q psy7040         317 EAKNPFNQPG-KPGTPEIKDFDTDFVELAWTPPEQN-GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQ  394 (716)
Q Consensus       317 ~~~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~p~~~-~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  394 (716)
                      .+.+....|. +|.++.+...+.+++.|+|.+|..+ .++.|.+|+|+|+..+...+...........++.|.+|.+++.
T Consensus        10 ~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   89 (132)
T 1x5h_A           10 AVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTE   89 (132)
T ss_dssp             CCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCE
T ss_pred             EEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCccEEEEeCCCccEEEeCCCCCCCE
Confidence            3444456676 6789999999999999999997653 3457999999999876444444333567789999999999999


Q ss_pred             EEEEEEEEeCCCCCCCCCCCCceEee
Q psy7040         395 YEFRVLAVNKGGPGEPSDPTAPHIAR  420 (716)
Q Consensus       395 Y~~~v~a~n~~g~~~~s~~~~~~~~~  420 (716)
                      |.|+|+|.|..|.|.+|......+..
T Consensus        90 Y~~~V~A~n~~G~g~~S~~~~~~T~~  115 (132)
T 1x5h_A           90 YNFRVAALTINGTGPATDWLSAETFE  115 (132)
T ss_dssp             EEEECEEEETTEEEEECCCEEEECCS
T ss_pred             EEEEEEEEcCCccCCCCcCEEeEcCc
Confidence            99999999999999888776555544

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=8.9e-11  Score=95.78  Aligned_cols=99  Identities=18%  Similarity=0.238  Sum_probs=76.3

Q ss_pred             ecCCCCCCC-CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc-eEEEeeecCCCCeEEecCCCCCCeE
Q psy7040         318 AKNPFNQPG-KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI-WEKCAQTEGDTPKGKVLDLIEGNQY  395 (716)
Q Consensus       318 ~~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~Y  395 (716)
                      ..+....|. +|.++.+...+.+++.|+|.+|..   +.|.+|.|+|+..+... +...........++.|.+|.+++.|
T Consensus        11 ~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~---g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y   87 (119)
T 2ee2_A           11 INSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE---KIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQY   87 (119)
T ss_dssp             CCCCSCCCCCCCCSCEEEEEETTEEEEECCCCSC---TTCCEEEEEEEESSSCGGGCEEEEEETTCSEEEECSCCTTCEE
T ss_pred             EECCCcCCCCCCCcEEEEEccCCEEEEEecCCCC---CccceEEEEEEECCCcccCcEEEEcCCCEeEEEECCCCCCCEE
Confidence            334445565 677999999999999999999765   47999999998765322 2222334456789999999999999


Q ss_pred             EEEEEEEeCCCCCCCCCCCCceEe
Q psy7040         396 EFRVLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       396 ~~~v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      .|+|+|.|..|.|.+|....+.+.
T Consensus        88 ~~~V~A~n~~G~g~~S~~~~~~T~  111 (119)
T 2ee2_A           88 FIEVGACNSAGCGPPSDMIEAFTK  111 (119)
T ss_dssp             EEEEEEECSSSCCCCCCCEEEECC
T ss_pred             EEEEEEEcCCccCCCCCCEEEECC
Confidence            999999999999998876554443

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=99.27  E-value=5.6e-11  Score=109.85  Aligned_cols=177  Identities=15%  Similarity=0.228  Sum_probs=111.8

Q ss_pred             CCCCCceE--EEEeCCeEEEEecCCCCCCCCc-cceEEEEEEcCCC----CcEEEecccC-----CCeEEecCCCCCcEE
Q psy7040          56 DPEGPLEV--SNIHKDGCTLKWNKPKDDGGEP-LEGYLVEKYDPET----GVWIPVGKTR-----EPEMDVTGLTPGHEY  123 (716)
Q Consensus        56 ~p~~~l~~--~~~~~~s~~l~W~~p~~~~~~~-i~~y~v~~~~~~~----~~~~~~~~~~-----~~~~~i~~L~~~~~y  123 (716)
                      +|.+|..+  .....+++.++|+++. +++.+ ...|.|.|+..+.    ..+..|....     ...+...+|.+.+.|
T Consensus        29 pP~~P~~l~C~~~~~~~~~c~W~p~~-~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~~~~Y  107 (236)
T 1axi_B           29 SSGEPKFTKCRSPERETFSCHWTDEV-HHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPY  107 (236)
T ss_dssp             ---CCCEEEEEBSSSSCEEEEECCC---------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCSSSEE
T ss_pred             CCCCCcCCeEEeCCCCEEEEEecCCC-CCCCCCCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCcccceE
Confidence            45455434  4556679999999743 33433 2588898876543    2466765321     145667789999999


Q ss_pred             EEEEEEEecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEE
Q psy7040         124 KFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVT  203 (716)
Q Consensus       124 ~~~v~a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~  203 (716)
                      .|+|.| | .+.+.   .. .+..                                                        
T Consensus       108 ~~~V~a-N-~~~s~---~~-~~~~--------------------------------------------------------  125 (236)
T 1axi_B          108 CIKLTS-N-GGTVD---EK-CFSV--------------------------------------------------------  125 (236)
T ss_dssp             EEEEEE-T-TEEEE---EE-EEEG--------------------------------------------------------
T ss_pred             EEEEEE-C-CccCC---Ce-Eeec--------------------------------------------------------
Confidence            999999 7 32221   10 0000                                                        


Q ss_pred             EEeCCCCceeEEEEEEecCCCCCCCCeE--EeEEeC----CeEEEEEECCCCC---CCCccceEEEEEEeCCCCCeEEcc
Q psy7040         204 AENINGKDSVEVEVIVLDKPSPPGGPLK--VSNVHA----EGVTLDWKVPDDD---GGQPIEKYVVDKMDEATGRWTPAG  274 (716)
Q Consensus       204 a~n~~g~~~~~~~~~v~~~p~~p~~~~~--~~~~~~----~~~~l~W~~p~~~---~~~~~~~y~v~~~~~~~~~~~~~~  274 (716)
                                    .-..+|.+|.+ +.  +.....    ..+.|+|++|...   +|..+..|.|+|+..+...|....
T Consensus       126 --------------~~~v~p~pP~~-l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry~~~~~~~w~~~~  190 (236)
T 1axi_B          126 --------------DEIVQPDPPIA-LNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMD  190 (236)
T ss_dssp             --------------GGGBCCCCCEE-EEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECC
T ss_pred             --------------ccccccCCCcc-cEEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEEEECCCCceEEEe
Confidence                          00136778876 64  333322    3599999988642   333478999999988877888764


Q ss_pred             ccCcccceEEEcCCCCCCeEEEEEEEEcCCC--CCCCCcc
Q psy7040         275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG--KSEPLTT  312 (716)
Q Consensus       275 ~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g--~~~~~~~  312 (716)
                      .  .....+.|.+|.|++.|.|+|+|.+..|  .|+++..
T Consensus       191 ~--~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~  228 (236)
T 1axi_B          191 P--ILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEV  228 (236)
T ss_dssp             C--BSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCC
T ss_pred             c--cCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCC
Confidence            3  3468899999999999999999999877  4544444

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.26  E-value=4.2e-10  Score=101.73  Aligned_cols=173  Identities=14%  Similarity=0.154  Sum_probs=113.2

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  515 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~  515 (716)
                      +.+.+|..+.|.|.+.|.|.+.+.|++...... ..  .....+....|.|.++...|.|.|+|.|.|..|..+..+.+.
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~-~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~   87 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-NG--KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE   87 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCC-SS--EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc-cc--eEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEE
Confidence            456699999999999999999999998432110 11  122334456799999999999999999999887654444443


Q ss_pred             EEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCC
Q psy7040         516 VLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK  595 (716)
Q Consensus       516 v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~  595 (716)
                      |.      .+|..     +   .+.                             ..   ..+..|....+.|.+....  
T Consensus        88 V~------~~p~~-----~---~~~-----------------------------~~---~~~~~G~~~~L~C~~~~~~--  119 (202)
T 1vca_A           88 IY------SFPKD-----P---EIH-----------------------------LS---GPLEAGKPITVKCSVADVY--  119 (202)
T ss_dssp             EE------BCCSC-----C---EEE-----------------------------ES---SCEETTSCEEEEEEEEEEB--
T ss_pred             EE------eCCCC-----C---EeC-----------------------------Cc---eEEcCCCCEEEEEEECCcC--
Confidence            33      11210     0   000                             00   2245667778888876410  


Q ss_pred             CccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeecc----------cceeeE
Q psy7040         596 DQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDN----------VDYFTK  665 (716)
Q Consensus       596 ~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~----------~~~~~~  665 (716)
                                  |....                                .+.|++++..+....          ......
T Consensus       120 ------------p~~~~--------------------------------~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~  155 (202)
T 1vca_A          120 ------------PFDRL--------------------------------EIDLLKGDHLMKSQEFLEDADRKSLETKSLE  155 (202)
T ss_dssp             ------------SGGGE--------------------------------EEEEEETTEEEEEEECCSCCSSCCCEEEEEE
T ss_pred             ------------CCCCe--------------------------------EEEEEeCCeECcccccccccCcCcceEEEEE
Confidence                        10000                                457888887765431          112345


Q ss_pred             EEEccCCCCCcEEEEEEEEcCCCCc-------eeeEEEEEecCCC
Q psy7040         666 ITIRPLQRSDTAQYTVTATNSQGKD-------QVFIEVVVTDKPS  703 (716)
Q Consensus       666 ~~i~~l~~~~~y~y~~~a~n~~G~~-------~~s~~l~v~~~p~  703 (716)
                      |.|.....++.|.|+|.|.|..|..       ..+..|.|..+|.
T Consensus       156 l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          156 VTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             EEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             EEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            6788888899999999999998873       4567788888764

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.26  E-value=1.7e-11  Score=120.77  Aligned_cols=238  Identities=14%  Similarity=0.167  Sum_probs=136.3

Q ss_pred             CeEEEEEEEecc-C-CCeEEEEeCCeEeccCCcE--EEEeCCC---eEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         442 SNFEFDINVIGE-P-IPTKEWLCNDITIISKDRF--KIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       442 ~~~~~~~~v~~~-p-~~~~~W~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      ..+.|.|.+.+. | .+.+.|++++..+......  ....++.   ...|.|.....+|.|.|+|.|.|..+.....+.+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            689999999886 3 4689999999887644321  1112211   1256677766778999999999987754433221


Q ss_pred             EEE----EEEEEEeCCC----CCCCCceeeEEEEEEe-cCCCceeeeEEEcc-ceeeeec-----ccc----ceeEEEEc
Q psy7040         515 TVL----GCSLKWNPPE----DDGGAPIEYYMVEKME-TDTGKVLIKWIRTN-DKRVTID-----NVD----YFTKITIR  575 (716)
Q Consensus       515 ~v~----~v~l~W~~p~----~~~~~~i~~y~v~~~~-~~~~~~~~~w~~~~-~~~~~~~-----~~~----~~~~~~i~  575 (716)
                      .+.    ...+.-.+|.    ..++.....|.+.... .+ ....+.|++.+ .......     ..+    ....+.|.
T Consensus       105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p-~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~  183 (323)
T 2wqr_A          105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSK-GTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVG  183 (323)
T ss_dssp             CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCS-SCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECC
T ss_pred             CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCC-CceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEEC
Confidence            000    1222222332    1233334556554432 11 00149999864 2221100     000    12368888


Q ss_pred             CCCCCCeEEEEEEEEcCCCCCccceeeecc-CCCCCCcccee-------eccceeEEEEEEeeEEEEeeeeccCceeeEE
Q psy7040         576 PLQRSDTAQYTVTATNSQGKDQVFIEVVVT-DKPSAPEGPIQ-------WLLTLTDVTWEISNYLQELHSSLMPISLESQ  647 (716)
Q Consensus       576 ~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~-~~p~~~~~~~~-------~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~  647 (716)
                      +++..+.+.|+|.|.|..+.......+... .....|. +..       +.+..+.|.+.+.|+.-.        .-.+.
T Consensus       184 ~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~-v~~~~~~~~~~~g~~~~l~C~~~g~~p~--------~~~v~  254 (323)
T 2wqr_A          184 TRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPE-VYAFATPEWPGSRDKRTLACLIQNFMPE--------DISVQ  254 (323)
T ss_dssp             HHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCE-EEEEECCCCTTCTTEEEEEEEEEEEBSS--------CCEEE
T ss_pred             HHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCE-EEEeCCChHHhcCCcEEEEEEeeeeeCC--------CcEEE
Confidence            888999999999999987433222222211 1222222 211       114455555443332100        00689


Q ss_pred             EEeCCeEeeecc----------c---ceeeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         648 YLMNDKRVTIDN----------V---DYFTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       648 W~~~~~~~~~~~----------~---~~~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                      |+++|..+....          .   .....|.|..+..+|.|.|+|.|.|..+.
T Consensus       255 W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          255 WLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             EEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            999999875431          0   11256899999999999999999999887

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.26  E-value=2.4e-11  Score=117.94  Aligned_cols=229  Identities=12%  Similarity=0.044  Sum_probs=137.4

Q ss_pred             EecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCC-CCeEEeEEeCCeEEEEEECCCCCCCCccce
Q psy7040         179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPG-GPLKVSNVHAEGVTLDWKVPDDDGGQPIEK  257 (716)
Q Consensus       179 ~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~-~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~  257 (716)
                      ...+....|.|.+++..|+|.|+|.|.|..|..+..+.|.|..+|.+.. .+.......+..+.|.|....   ..+...
T Consensus        45 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~---~~~~~~  121 (292)
T 4dkd_C           45 YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD---PVLEAG  121 (292)
T ss_dssp             CCBTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS---GGGGSS
T ss_pred             eccCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC---CCccee
Confidence            3344567999999999999999999999999989999999988775411 112445567889999999642   111122


Q ss_pred             EEEEEEeCC---CCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEE
Q psy7040         258 YVVDKMDEA---TGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK  334 (716)
Q Consensus       258 y~v~~~~~~---~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~  334 (716)
                      +.+......   .......    .....+.|.++...+.+.|+|.|.|..|.... .                       
T Consensus       122 v~W~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s-~-----------------------  173 (292)
T 4dkd_C          122 VSLVRVRGRPLMRHTNYSF----SPWHGFTIHRAKFIQSQDYQCSALMGGRKVMS-I-----------------------  173 (292)
T ss_dssp             EEEEEGGGCCCCSSCCEEC----CSSSCCEETTCCGGGCSEEEEEECSTTSCEEC-C-----------------------
T ss_pred             EEEEecCCCccccCCcccc----cCCceEEECCCCHHHCeEEEEEEEeCCCceeE-E-----------------------
Confidence            333322111   1111111    11344899999999999999999875442100 0                       


Q ss_pred             eeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCC
Q psy7040         335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT  414 (716)
Q Consensus       335 ~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~  414 (716)
                           .+.|.-....  .                                                              
T Consensus       174 -----~~~l~V~~~~--~--------------------------------------------------------------  184 (292)
T 4dkd_C          174 -----SIRLKVQKVI--P--------------------------------------------------------------  184 (292)
T ss_dssp             -----CEEEEEECCC--C--------------------------------------------------------------
T ss_pred             -----EEEEEEeCCC--C--------------------------------------------------------------
Confidence                 0001000000  0                                                              


Q ss_pred             CceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCC-CeEEEEeCCeEeccCCcEEEEeCC--CeEEEEECCCCC
Q psy7040         415 APHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI-PTKEWLCNDITIISKDRFKIVNDD--KSTKLKVFDSKR  491 (716)
Q Consensus       415 ~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~l~~  491 (716)
                               .+|.+.. .+....+..|..+.|.|.+.+.|. ..+.|++++..+............  ....|.|.++..
T Consensus       185 ---------~~p~i~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~  254 (292)
T 4dkd_C          185 ---------GPPALTL-VPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDF  254 (292)
T ss_dssp             ---------SSCEEEE-ESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCT
T ss_pred             ---------CCCeEEc-cCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccCh
Confidence                     0000000 000112346777888999887665 467888888765433332222111  234899999999


Q ss_pred             CCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         492 GDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       492 ~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .|.|.|+|.|.|..|..+.+..+.|.
T Consensus       255 ~d~G~Y~C~a~N~~g~~~~~~~l~V~  280 (292)
T 4dkd_C          255 QHAGNYSCVASNVQGKHSTSMFFRVV  280 (292)
T ss_dssp             TSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred             hcCeEEEEEEecCCCCceeEEEEEEe
Confidence            99999999999999998888777665

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.25  E-value=2.7e-10  Score=102.25  Aligned_cols=174  Identities=21%  Similarity=0.374  Sum_probs=109.8

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc--CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS--KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      +....+..|+.+.|.|.+.+.|.+.+.|++++..+..  ..++.+..   ...|.|.++...|.|.|+|.+.|..+....
T Consensus         9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   85 (189)
T 2v5t_A            9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA---NNNLQILNINKSDEGIYRCEGRVEARGEID   85 (189)
T ss_dssp             CSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT---TSCEEETTCCGGGCEEEEEEEEETTTTEEE
T ss_pred             CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec---CCCEEEeeCCHhHCcEEEEEEEEcCCCceE
Confidence            3457899999999999999999999999999887653  33333322   236999999999999999999987754332


Q ss_pred             EEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEE
Q psy7040         511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT  590 (716)
Q Consensus       511 s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  590 (716)
                      ...+.+.   +.- +|.                       .   ....           ... ...+..|....+.|.+.
T Consensus        86 ~~~~~l~---v~~-~p~-----------------------~---~~~~-----------~~~-~~~~~~g~~v~l~C~~~  123 (189)
T 2v5t_A           86 FRDIIVI---VNV-PPA-----------------------I---SMPQ-----------KSF-NATAERGEEMTFSCRAS  123 (189)
T ss_dssp             EEEEEEE---EEE-EEE-----------------------E---ECSC-----------CEE-EEETTSCCCEEEECEEE
T ss_pred             EEEEEEE---ecC-CCC-----------------------c---cccc-----------ccc-cccccCCCcEEEEEEEc
Confidence            2111111   000 000                       0   0000           000 01133444555555542


Q ss_pred             cCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeecc----cceeeEE
Q psy7040         591 NSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDN----VDYFTKI  666 (716)
Q Consensus       591 n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~  666 (716)
                      .   .            |  +.                                .+.|+++|..+....    ......|
T Consensus       124 g---~------------p--~~--------------------------------~v~W~~~g~~~~~~~~~~~~~~~~~L  154 (189)
T 2v5t_A          124 G---S------------P--EP--------------------------------AISWFRNGKLIEENEKYILKGSNTEL  154 (189)
T ss_dssp             E---E------------S--CC--------------------------------EEEEEETTEECCCSSSEEEETTTTEE
T ss_pred             c---C------------C--CC--------------------------------eEEEEECCEECcCCCcEEEecCCCEE
Confidence            1   0            0  00                                568899888776541    1223679


Q ss_pred             EEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       667 ~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      .|.++...|+|.|+|.|.|..|....+..|.|..
T Consensus       155 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          155 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            9999999999999999999999999888888763

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.25  E-value=2.5e-10  Score=102.65  Aligned_cols=179  Identities=16%  Similarity=0.139  Sum_probs=123.1

Q ss_pred             CCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEe-----CCCCCeEEcccc-CcccceEEEcC-CCCCCeEEE
Q psy7040         224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMD-----EATGRWTPAGET-EGPVTGLEVEG-LIPNHKYKF  296 (716)
Q Consensus       224 ~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~-----~~~~~~~~~~~~-~~~~~~~~i~~-L~p~~~y~~  296 (716)
                      .+|.+ +.+..... ...|+|+++... + ....|.++++.     .+...|...... ......+.|.+ +..+..|.+
T Consensus         8 p~P~n-v~~~s~n~-~~iL~W~p~~~~-~-~~~~Y~V~y~~~~~~~~~~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~Y~~   83 (206)
T 4doh_B            8 PAPQQ-LSVLSTNM-KHLLMWSPVIAP-G-ETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNL   83 (206)
T ss_dssp             CCCCC-CEEEEETT-EEEEECCCCCCS-S-SCCEEEEEEEEHHHHHHSTTCCEEEEEEEEESSSEEECTTTCCSSSCEEE
T ss_pred             CCCCe-eEEEEeCC-EEEEEECCCCCC-C-CCEEEEEEEEEeccccCCCccceecccccCCCCCEEcCCccccCCCCEEE
Confidence            34676 77776544 589999976432 2 34789999984     356778764322 24567888885 777889999


Q ss_pred             EEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEee
Q psy7040         297 RVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ  376 (716)
Q Consensus       297 ~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~  376 (716)
                      ||+|.+..+.|.++.........  ...+++|. +.+. ....+|.|.|.+|     +.+..|.|.|...++........
T Consensus        84 RVrA~~~~~~S~w~~~~~f~~~~--~t~i~PP~-v~v~-~~~~~i~V~~~~p-----~~~l~Y~v~y~~~~~~~~~~~~~  154 (206)
T 4doh_B           84 RVRATLGSQTSAWSILKHPFNRQ--STILTRPG-MEIT-KDGFHLVIELEDL-----GPQFEFLVAYWRREPGAEEHVKM  154 (206)
T ss_dssp             EEEEEETTEECCCEECSSCBCGG--GCBCCCCC-EEEE-EETTEEEEEECCC-----CTTCEEEEEEEESSSSCCCEEEE
T ss_pred             EEEEEcCCCccCccccccccchh--hcccCCCe-EEEE-eCCCEEEEEecCC-----CCcEEEEEEEEEcCCCceeEEeE
Confidence            99999988877665544332221  12344444 7776 5788999999986     25779999998766443222222


Q ss_pred             ecCCCCeEEecCCCCCCeEEEEEEEEeCC--CCCCCCCCCC
Q psy7040         377 TEGDTPKGKVLDLIEGNQYEFRVLAVNKG--GPGEPSDPTA  415 (716)
Q Consensus       377 ~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~--g~~~~s~~~~  415 (716)
                      .......+.|.+|.|++.|.|+|+|....  +.|..|....
T Consensus       155 ~~~~~~~~~i~~L~p~t~Ycv~Vra~~~~~~~~g~~S~~~C  195 (206)
T 4doh_B          155 VRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTEC  195 (206)
T ss_dssp             ECCSSSEEEEEECCSSSCEEEEEEEEEGGGTEECCCCCCEE
T ss_pred             EccCCeEEEEeCCCCCCcEEEEEEEEecCCCCCCCCCCCEe
Confidence            33446789999999999999999999853  6666665433

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=99.25  E-value=1.1e-10  Score=91.75  Aligned_cols=86  Identities=16%  Similarity=0.143  Sum_probs=71.9

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      ..+.+|.++.+...+.+++.|+|.+|... ++.+.+|.|.|...+...+...........+++|.+|.|++.|.|+|+|.
T Consensus         6 t~~~~P~~l~v~~~t~~Sv~lsW~~p~~~-~g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~~L~p~t~Y~~~V~A~   84 (103)
T 3t04_D            6 SVSSVPTKLEVVDATPTSLKISWDAYYSS-WQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYAY   84 (103)
T ss_dssp             CCCCCCCSCEEEEEETTEEEEECTTTTTT-SCCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEE
T ss_pred             ccCCCCceeEEEecCCCEEEEEccCCCCC-CCccceEEEEEEECCCCCccEEEEcCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            46788999999999999999999998754 44799999999987533333344456678999999999999999999999


Q ss_pred             eC--CCCCC
Q psy7040         403 NK--GGPGE  409 (716)
Q Consensus       403 n~--~g~~~  409 (716)
                      |.  .|.++
T Consensus        85 ~~~~~G~~~   93 (103)
T 3t04_D           85 DTFFPGYEP   93 (103)
T ss_dssp             SCCCTTCCC
T ss_pred             eCCCCCCCC
Confidence            99  88776

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.24  E-value=3.5e-11  Score=96.27  Aligned_cols=96  Identities=22%  Similarity=0.238  Sum_probs=77.4

Q ss_pred             CCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       321 ~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      ...+|.+|.++.+...+.+++.|+|.+|...++ .|.+|.|+|+..+...|... .......++.|.+|.|++.|.|+|+
T Consensus         4 ~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~l~~L~p~t~Y~~~V~   81 (108)
T 2djs_A            4 GSSGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSS-MARSQTNTARIDGLRPGMVYVVQVR   81 (108)
T ss_dssp             CCCCCCCCSCCEEEEECSSEEEEECCCCSCCSS-CEEEEEEEEEETTSCSTTCE-EEEESSSEEEEESCCTTCEEEEEEE
T ss_pred             CCCCCCCCcceEEEecCCCEEEEEECCCCCCCC-eEEEEEEEEEECCCCCccee-EEecCccEEEEcCCCCCCEEEEEEE
Confidence            446788999999999999999999999865444 69999999988764443221 2345778999999999999999999


Q ss_pred             EEeCCCCCCCCCCCCceE
Q psy7040         401 AVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~~  418 (716)
                      |.|..|.|.+|....+.+
T Consensus        82 A~n~~G~g~~S~~~~~~T   99 (108)
T 2djs_A           82 ARTVAGYGKFSGKMCFQT   99 (108)
T ss_dssp             EEESSCEEEECCCEEEEC
T ss_pred             EEeCCEECCCCCCEEEEe
Confidence            999999998887654443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.24  E-value=4.9e-11  Score=109.45  Aligned_cols=125  Identities=17%  Similarity=0.125  Sum_probs=79.6

Q ss_pred             EEEEcCCCCCCeEEEEEEEEcCCCCC-ccceeeeccCCCC----CCccceeeccceeEEEEEEeeEEEEeeeeccCc-ee
Q psy7040         571 KITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDKPS----APEGPIQWLLTLTDVTWEISNYLQELHSSLMPI-SL  644 (716)
Q Consensus       571 ~~~i~~L~~~~~y~~~v~a~n~~G~~-~~s~~~~v~~~p~----~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~-~~  644 (716)
                      .+.+.++...+.+.|+|.|.|..|.. .....+.|...|.    .+.......+..+.              |.|.+ .|
T Consensus        73 ~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~--------------l~C~~~~~  138 (212)
T 2v9r_A           73 RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAV--------------MECQPPRG  138 (212)
T ss_dssp             SCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEE--------------EECBCCCE
T ss_pred             EEEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEE--------------EEEecCCC
Confidence            34456778899999999999988754 2333344432221    11101112233333              66766 44


Q ss_pred             ----eEEEEeCCeEeeeccc---ceeeEEEEccCCCCCcEEEEEEEEcCCCCcee-eEEEEEecCCCCCCCCe
Q psy7040         645 ----ESQYLMNDKRVTIDNV---DYFTKITIRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPSAPEGPI  709 (716)
Q Consensus       645 ----~~~W~~~~~~~~~~~~---~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~-s~~l~v~~~p~~p~~p~  709 (716)
                          .+.|++++..+.....   .....|.|.++...|.|.|+|.|.|..|.... .+.|.|..+|.....|.
T Consensus       139 ~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P~  211 (212)
T 2v9r_A          139 HPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAAA  211 (212)
T ss_dssp             ESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---------
T ss_pred             CCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhhcc
Confidence                8999999998875421   12358999999999999999999999998755 48999999988776653

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.24  E-value=2.4e-11  Score=97.57  Aligned_cols=93  Identities=25%  Similarity=0.450  Sum_probs=69.5

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeec-CCCceEEEeeec-----------CCCCeEEecCCC
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK-YSPIWEKCAQTE-----------GDTPKGKVLDLI  390 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~-~~~~~~~~~~~~-----------~~~~~~~i~~l~  390 (716)
                      .+|++|.   +..++.+++.|+|.+|..++ .+|.+|.|+++.. ....|..+....           ....++++.+|.
T Consensus         4 ~pP~~P~---v~~~~~~sv~L~W~~P~~~G-~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~   79 (115)
T 2ic2_A            4 YPPTPPN---VTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLK   79 (115)
T ss_dssp             CCCCCCE---EEECC---EEEEEEEECCSS-CCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCC
T ss_pred             CCCCcCE---eEEEeCCEEEEEEcCCCCCC-CCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCCCC
Confidence            4566665   67788999999999987654 7899999999987 456787665322           234578999999


Q ss_pred             CCCeEEEEEEEEeCCCCCCCCCCCCceEe
Q psy7040         391 EGNQYEFRVLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       391 ~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      +++.|.|+|+|.|..|.+.+|..+..+..
T Consensus        80 p~t~Y~FRV~A~N~~G~~~pS~~S~~~~~  108 (115)
T 2ic2_A           80 PQHTYRFRILAVYSNNDNKESNTSAKFYL  108 (115)
T ss_dssp             SSEEEEEEEEEEETTSCEEECCCCCCEEE
T ss_pred             CCCEEEEEEEEEeCCCCCCCCCCCCCEEe
Confidence            99999999999999999888877665554

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=99.24  E-value=4.8e-11  Score=97.54  Aligned_cols=105  Identities=23%  Similarity=0.388  Sum_probs=76.9

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcc---ccCcccceEEEcCCCCCCeEEEE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAG---ETEGPVTGLEVEGLIPNHKYKFR  297 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~---~~~~~~~~~~i~~L~p~~~y~~~  297 (716)
                      +.|.+|.+ +.+.....+ +.|+|++|..++|.++.+|.|+++......|....   ......+.+.|.+|.|++.|.|+
T Consensus         6 ~~P~~P~~-~~~~~~~~t-v~l~W~~P~~~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   83 (122)
T 2e3v_A            6 SGPSSPSI-DQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   83 (122)
T ss_dssp             CCCCCCEE-EEEEECSSC-EEEEEECCCCC--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTCEEEEE
T ss_pred             cCCcCCCc-cEEEecCCc-EEEEECCCCcCCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCCEEEEE
Confidence            56777776 677766666 99999999888887899999999988877783221   11245689999999999999999


Q ss_pred             EEEEcCCCCCCCCcccceEEecCCCCCCCCCC
Q psy7040         298 VRAVNKQGKSEPLTTTASIEAKNPFNQPGKPG  329 (716)
Q Consensus       298 v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~  329 (716)
                      |+|.|..|.+.++.....  ...+..+|.+|.
T Consensus        84 V~A~n~~G~g~~S~~~~~--~t~~~~~P~~P~  113 (122)
T 2e3v_A           84 LAALNGKGLGEISAASEF--KTQPVREPSAPK  113 (122)
T ss_dssp             EEEEETTEECCCCCCEEE--ECCCCCCCC---
T ss_pred             EEEEeCCccCCCcccccc--cccCCCCCCCCe
Confidence            999999999988776543  223334566554

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.24  E-value=1.7e-10  Score=104.63  Aligned_cols=162  Identities=15%  Similarity=0.260  Sum_probs=112.6

Q ss_pred             ccEEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEeccCCcEEEEeCC--CeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         434 SDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDD--KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      .++.+.+|..+.|.|.+. +.|.+.+.|++++..+..+.++.+..+.  ....|.|.++.+.|.|.|+|.|.|  |....
T Consensus        10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~   87 (207)
T 3rbs_A           10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATN   87 (207)
T ss_dssp             EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEE
T ss_pred             CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEE
Confidence            357889999999999996 4799999999999999888888777654  566899999999999999999999  44433


Q ss_pred             EEEEEEE--------------------------EEEEEEeCCCCCCCCceeeEEEEEEecCC-CceeeeEEEccceeeee
Q psy7040         511 TAKVTVL--------------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDT-GKVLIKWIRTNDKRVTI  563 (716)
Q Consensus       511 s~~~~v~--------------------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~w~~~~~~~~~~  563 (716)
                      ...+.+.                          ...+....  ..+......|.+    .+. +.|.+.|++.+......
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v--~~g~~v~l~C~v----~g~~P~p~i~W~k~g~~l~~~  161 (207)
T 3rbs_A           88 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV--TGECNVLLKCKV----ANIKKETHIVWYKDEREISVD  161 (207)
T ss_dssp             EEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEE--ETTTEEEEEEEE----ESCCTTCEEEEEETTEEECCC
T ss_pred             EEEEEEEccchhhhcccccccccccccCCCCceEecCCcEE--cCCCcEEEEEEE----eCCCCCCEEEEEECCEECCCC
Confidence            3322110                          00111111  112222233333    333 45669999987765432


Q ss_pred             c---cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee
Q psy7040         564 D---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  603 (716)
Q Consensus       564 ~---~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~  603 (716)
                      .   .......+.|.++.+.+.+.|+|.|.|..|....+..+.
T Consensus       162 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~  204 (207)
T 3rbs_A          162 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV  204 (207)
T ss_dssp             CCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             CceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEe
Confidence            1   122335799999999999999999999999766655443

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.24  E-value=1.6e-11  Score=101.56  Aligned_cols=118  Identities=31%  Similarity=0.488  Sum_probs=87.6

Q ss_pred             ceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCC--CCCeEEccccCcccceEEEcCC
Q psy7040         211 DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA--TGRWTPAGETEGPVTGLEVEGL  288 (716)
Q Consensus       211 ~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~i~~L  288 (716)
                      .+..+.+.+.++|.+|.+ +.+.....+++.|+|.+| .+++.++.+|.|+++...  ...|..+....+.... .+.+|
T Consensus         5 ~s~~~~~~v~~~P~~P~~-~~~~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~~~-~i~~L   81 (127)
T 1uey_A            5 SSGPTPAPVYDVPNPPFD-LELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT-AQLNL   81 (127)
T ss_dssp             CCCCCCCCCCCSCCCCEE-EEEECCSSSCEEEEEECC-CCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCE-EEECC
T ss_pred             CcEEEEEEeecCCcCCCC-cEEEEccCCEEEEEEECC-CCCCCCceEEEEEEEECCCCCCccEEEeeeCCCceE-EEecC
Confidence            345566777889999988 788888899999999976 446668999999998753  4678766544333444 57799


Q ss_pred             CCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCC-CCCCcEE
Q psy7040         289 IPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG-KPGTPEI  333 (716)
Q Consensus       289 ~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~-~p~~~~~  333 (716)
                      .|++.|.|+|+|.|..|.+.++.....+.  +....|. +|.++.+
T Consensus        82 ~p~t~Y~frV~A~n~~G~s~~S~~~~~~~--T~~~~P~~~P~~v~~  125 (127)
T 1uey_A           82 SPYVNYSFRVMAVNSIGKSLPSEASEQYL--TKASEPDKNPTSGPS  125 (127)
T ss_dssp             CTTCEECCEEEEEESSCBCCCCSCCCCEE--CCCSSCSSCSSCCCC
T ss_pred             CCCCEEEEEEEEEeCCccCCccccccceE--cCCCCCCCCCceeEe
Confidence            99999999999999999998887742232  2334554 5766654

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.24  E-value=1.1e-11  Score=98.23  Aligned_cols=76  Identities=22%  Similarity=0.248  Sum_probs=63.1

Q ss_pred             EeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEec--ccCCCeEEecCCCCCcEEEEEEEEEecCccCCCcccc
Q psy7040          66 IHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG--KTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETF  142 (716)
Q Consensus        66 ~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~--~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~  142 (716)
                      .+.+++.|+|.++ .++|.+|.+|.|+|+..++..|....  ....++++|.+|.|++.|+|||.|.|..|.|.++...
T Consensus        19 ~~~~sv~L~W~p~-~dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~frV~A~N~~G~s~pS~~~   96 (114)
T 2kbg_A           19 SSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYE   96 (114)
T ss_dssp             CSTTCEEEEECCC-CCSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECCCCTTCCEEEEEEEECTTSCEEEEEEE
T ss_pred             cCCCEEEEEEECC-CCCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcCCCCCCEEEEEEEEEeCCcCcCCcCCE
Confidence            5889999999965 47889999999999987666554322  2345789999999999999999999999999988643

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=4.7e-11  Score=95.14  Aligned_cols=93  Identities=24%  Similarity=0.335  Sum_probs=76.9

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      ..|.+|.++.+...+.+++.|+|.+|...++ .+.+|+|+|+..+...|....   ....++.|.+|.+++.|.|+|+|.
T Consensus         6 ~~P~~P~~l~~~~~~~~si~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A~   81 (106)
T 2ed8_A            6 SGPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIE---VDGLSYKLEGLKKFTEYSLRFLAY   81 (106)
T ss_dssp             CCCCCCEEEEEECSSTTEEEEEEECCSSCSS-CCCEEEEEEEETTTCCEEEEE---ECSSCEEEESCCTTCEEEEEEEEE
T ss_pred             CCCcCCceeEEEecCCCEEEEEECCCCCCCC-CeeEEEEEEEECCCCceEEEe---CCccEEEECCCCCCCEEEEEEEEE
Confidence            6788999999999999999999999875444 799999999987766665443   346899999999999999999999


Q ss_pred             eCCCCCCCCCCCCceEe
Q psy7040         403 NKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       403 n~~g~~~~s~~~~~~~~  419 (716)
                      |..|.|.++......+.
T Consensus        82 n~~G~g~~S~~~~~~T~   98 (106)
T 2ed8_A           82 NRYGPGVSTDDITVVTL   98 (106)
T ss_dssp             CSSCEEEECCCEEEECC
T ss_pred             eCCccCCCcCCEEEEcC
Confidence            99999887766544443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.23  E-value=2.1e-10  Score=114.03  Aligned_cols=245  Identities=12%  Similarity=0.154  Sum_probs=139.6

Q ss_pred             cEEEecCCeEEEEEEEeccC--CCeEEEEeC--CeEe-----------------ccCCcEEEEeC--CCeEEEEECCCCC
Q psy7040         435 DIKVRAGSNFEFDINVIGEP--IPTKEWLCN--DITI-----------------ISKDRFKIVND--DKSTKLKVFDSKR  491 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p--~~~~~W~~~--~~~~-----------------~~~~~~~~~~~--~~~~~l~i~~l~~  491 (716)
                      .+.+..|+.+.|.|.+.+.+  .+.+.|+++  +..+                 ....++.+..+  .....|.|.++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (344)
T 1za6_B            9 AEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRS   88 (344)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCc
Confidence            46789999999999998873  678999986  3221                 01345655543  3567899999999


Q ss_pred             CCceeEEEEEEcCCCceeeEEEEEEE-----EEEEEEeCCC---CCCCCceeeEEEEEEecCCCceeeeEEEccceeeee
Q psy7040         492 GDSGIYTLAVKNSWGTDKGTAKVTVL-----GCSLKWNPPE---DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTI  563 (716)
Q Consensus       492 ~~~~~y~~~a~n~~g~~~~s~~~~v~-----~v~l~W~~p~---~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~  563 (716)
                      .|.|.|.|.|.|..+.......+.+.     ...+.-.++.   ..+......|.+......  .+.+.|++.+......
T Consensus        89 ~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~--~~~v~W~k~g~~~~~~  166 (344)
T 1za6_B           89 EDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE--PVTVSWNSGALTSGVH  166 (344)
T ss_dssp             GGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSS--CCCEEETTTTBCTTEE
T ss_pred             ccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECC--CeEEEEecCCccCcee
Confidence            99999999999965544444455554     1112211221   222333445555543111  1239998876532100


Q ss_pred             c-----ccc----ceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee--c-------------------cCCCCCCcc
Q psy7040         564 D-----NVD----YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV--V-------------------TDKPSAPEG  613 (716)
Q Consensus       564 ~-----~~~----~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~--v-------------------~~~p~~~~~  613 (716)
                      .     ..+    ....+.|......+ +.|+|.|.|..|.......+.  +                   ......|. 
T Consensus       167 ~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~-  244 (344)
T 1za6_B          167 TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQ-  244 (344)
T ss_dssp             ECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCE-
T ss_pred             ECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCE-
Confidence            0     000    11357777777666 999999999887543222221  0                   01111122 


Q ss_pred             ce-------eeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeecc--------cce---eeEEEEccCCCCC
Q psy7040         614 PI-------QWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDN--------VDY---FTKITIRPLQRSD  675 (716)
Q Consensus       614 ~~-------~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~--------~~~---~~~~~i~~l~~~~  675 (716)
                      +.       .+....+.|.+.+.|+.-.        .-.+.|+++|..+....        .+.   ...+.|.....++
T Consensus       245 v~~~~~~~~~~~~~~~~L~C~~~g~~P~--------~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~  316 (344)
T 1za6_B          245 VYTLPPSRDELTKNQVSLTCLVKGFYPS--------DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQ  316 (344)
T ss_dssp             EEEECCCGGGGGSSSEEEEEEEEEEBSS--------CCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHT
T ss_pred             EEEeCCChHhccCCcEEEEEEEeeEECC--------CeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccC
Confidence            11       1123345555444332100        00689999998775330        111   1345565555567


Q ss_pred             cEEEEEEEEcCCCCce
Q psy7040         676 TAQYTVTATNSQGKDQ  691 (716)
Q Consensus       676 ~y~y~~~a~n~~G~~~  691 (716)
                      .|.|+|.|.|......
T Consensus       317 ~g~YtC~a~~~~l~~~  332 (344)
T 1za6_B          317 GNVFSCSVMHEALHNH  332 (344)
T ss_dssp             TCEEEEEEECTTSTTS
T ss_pred             CCeEEEEEEcCCCCCC
Confidence            9999999999766543

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.23  E-value=5.5e-11  Score=97.75  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=80.5

Q ss_pred             CCCCCCCCcccceEEecCCCC------CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEee
Q psy7040         303 KQGKSEPLTTTASIEAKNPFN------QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ  376 (716)
Q Consensus       303 ~~g~~~~~~~~~~~~~~~~~~------~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~  376 (716)
                      ..|.+.++...   .+.++..      +|.+|.++.+.... +++.|+|.+|...+ +.|.+|.|+|+... ..+. ...
T Consensus         3 ~~G~g~~S~~~---~~~T~~~~~~~~~~P~~P~~l~~~~~~-~sv~l~W~~P~~~~-g~i~~Y~v~y~~~~-~~~~-~~~   75 (126)
T 1x5i_A            3 SGSSGPATDWL---SAETFESDLDETRVPEVPSSLHVRPLV-TSIVVSWTPPENQN-IVVRGYAIGYGIGS-PHAQ-TIK   75 (126)
T ss_dssp             SCCCCCCCCCC---CSCCCCTTSBCSSCCCSCSEEEEEEET-TEEEEEEECCSCTT-BCCCEEEEEECSSC-GGGE-EEE
T ss_pred             CCccCCCCCCE---EeECccccCccCCCCCCCCeeEEEecC-CEEEEEEcCCCCCC-CCEeEEEEEEEcCC-CCce-EEE
Confidence            45666666554   3334444      88999999999886 99999999987554 57999999998432 2322 233


Q ss_pred             ecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCC
Q psy7040         377 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT  414 (716)
Q Consensus       377 ~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~  414 (716)
                      ......+++|.+|.+++.|.|+|+|.|..|.|.++...
T Consensus        76 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~  113 (126)
T 1x5i_A           76 VDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYES  113 (126)
T ss_dssp             CCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCCC
T ss_pred             eCCCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceeeE
Confidence            45778899999999999999999999999999887643

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.23  E-value=2.7e-11  Score=120.17  Aligned_cols=226  Identities=15%  Similarity=0.142  Sum_probs=115.0

Q ss_pred             cceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCC-------------------CCCC--CCCC---cEEEe
Q psy7040         280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPF-------------------NQPG--KPGT---PEIKD  335 (716)
Q Consensus       280 ~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~-------------------~~p~--~p~~---~~~~~  335 (716)
                      ...+.|.++...+.+.|+|.|.|. |.......   +.+....                   .+|.  .|..   -....
T Consensus        60 ~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~---l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v  135 (334)
T 1ry7_B           60 PQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFS---VRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAV  135 (334)
T ss_dssp             ---------------------------------------------------------------CCCCSCCTTCCCCEEEE
T ss_pred             cceEEEeecccccCEEEEEEEEeC-CeEEEEEE---EEEeccCccccccccccccccccccCCCCEEeccccccceeEEe
Confidence            468999999999999999999997 43211111   1111100                   0111  1111   12333


Q ss_pred             eeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc----eEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCC
Q psy7040         336 FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI----WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  411 (716)
Q Consensus       336 ~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s  411 (716)
                      ..+..+.|.|.....    +..  .+.|...+..-    .............+.|.++...+.+.|+|.|.|..|....+
T Consensus       136 ~~g~~v~l~C~~~g~----p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  209 (334)
T 1ry7_B          136 PAANTVRFRCPAAGN----PTP--SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT  209 (334)
T ss_dssp             ETTCCEEEECCCCCS----SCC--EEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEE
T ss_pred             cCCCcEEEEEEccCC----CCC--eEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEE
Confidence            456778888876322    122  23343322100    00001112345679999999999999999999988753211


Q ss_pred             CCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEe----CCeEeccCCcE--EEEe-------C
Q psy7040         412 DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC----NDITIISKDRF--KIVN-------D  478 (716)
Q Consensus       412 ~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~----~~~~~~~~~~~--~~~~-------~  478 (716)
                        .........+.+|.+....+....+..|..+.|.|.+.+.|.+.+.|++    ++..+......  .+..       +
T Consensus       210 --~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  287 (334)
T 1ry7_B          210 --YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTD  287 (334)
T ss_dssp             --EEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSC
T ss_pred             --EEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCcccccc
Confidence              1111122223345554444567889999999999999999999999999    56555433221  1111       1


Q ss_pred             CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       479 ~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .....|.|.++...|.|.|+|.|.|..|....++.+.+.
T Consensus       288 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  326 (334)
T 1ry7_B          288 KELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL  326 (334)
T ss_dssp             TTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEE
T ss_pred             ccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEE
Confidence            122479999999999999999999999998888777665

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.23  E-value=6.5e-11  Score=96.38  Aligned_cols=97  Identities=31%  Similarity=0.480  Sum_probs=79.9

Q ss_pred             CCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC-CCceEEEeeecCCCCeEEecCCCCCCeEEEEE
Q psy7040         321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV  399 (716)
Q Consensus       321 ~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v  399 (716)
                      ....|.+|.++.+...+.+++.|+|.+|. +++.++.+|.|+++..+ ...|..... ......+.+.+|.+++.|.|+|
T Consensus        12 ~~~~P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~frV   89 (117)
T 1uem_A           12 LSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVAN-HVKTTLYTVRGLRPNTIYLFMV   89 (117)
T ss_dssp             SCCSCBCCCCCEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEEE-EECSSEEEECSCCTTCEEEEEE
T ss_pred             CCCCccCCCCCEEEEecCCEEEEEEeCCC-CCCcCceEEEEEEEECCCCCceeEccc-ccCcCEEEECCCCCCCEEEEEE
Confidence            34678899999999999999999999977 55668999999998764 455665432 3467889999999999999999


Q ss_pred             EEEeCCCCCCCCCCCCceEe
Q psy7040         400 LAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       400 ~a~n~~g~~~~s~~~~~~~~  419 (716)
                      +|.|..|.+.++.....+..
T Consensus        90 ~A~n~~G~s~~S~~~~~v~t  109 (117)
T 1uem_A           90 RAINPQGLSDPSPMSDPVRT  109 (117)
T ss_dssp             EEEETTEEEEECCCCCCEEC
T ss_pred             EEECCCccCCCcCCCccEEc
Confidence            99999999988887764443

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.23  E-value=9.6e-11  Score=96.88  Aligned_cols=92  Identities=32%  Similarity=0.547  Sum_probs=75.9

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC--CCceEEEeeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY--SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      .+|.+|.++.+...+.+++.|+|.+| .+++.+|.+|.|+++...  ...|............ .+.+|.+++.|.|+|+
T Consensus        15 ~~P~~P~~~~~~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~~~-~i~~L~p~t~Y~frV~   92 (127)
T 1uey_A           15 DVPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT-AQLNLSPYVNYSFRVM   92 (127)
T ss_dssp             CSCCCCEEEEEECCSSSCEEEEEECC-CCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCE-EEECCCTTCEECCEEE
T ss_pred             cCCcCCCCcEEEEccCCEEEEEEECC-CCCCCCceEEEEEEEECCCCCCccEEEeeeCCCceE-EEecCCCCCEEEEEEE
Confidence            67889999999999999999999986 456678999999998754  3568766655555555 5779999999999999


Q ss_pred             EEeCCCCCCCCCCCCc
Q psy7040         401 AVNKGGPGEPSDPTAP  416 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~  416 (716)
                      |.|..|.|.++.....
T Consensus        93 A~n~~G~s~~S~~~~~  108 (127)
T 1uey_A           93 AVNSIGKSLPSEASEQ  108 (127)
T ss_dssp             EEESSCBCCCCSCCCC
T ss_pred             EEeCCccCCccccccc
Confidence            9999999999887533

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=4.4e-11  Score=96.65  Aligned_cols=87  Identities=20%  Similarity=0.369  Sum_probs=72.2

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .+|.+|.++++...+ +++.|+|.+|...+ +.|.+|.|+|+...  .+...........+++|.+|.+++.|.|+|+|.
T Consensus        16 ~~P~~P~~l~~~~~~-~sv~l~W~~P~~~n-g~i~gY~i~y~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~   91 (116)
T 2edb_A           16 QVPDQPSSLHVRPQT-NCIIMSWTPPLNPN-IVVRGYIIGYGVGS--PYAETVRVDSKQRYYSIERLESSSHYVISLKAF   91 (116)
T ss_dssp             SCCCCCSCEEEEECS-SCEEEEECCCSCTT-BCCCEEEEEEEESS--TTSEEEEEETTCCEEEECSCCSSSBEEEEEEEE
T ss_pred             CCCCCCCCeEEEECC-CEEEEEEcCCCCCC-CceeEEEEEEEeCC--CCeEEEEeCCCeeEEEeCCCCCCCEEEEEEEEE
Confidence            678899999999888 99999999987664 47999999998643  233334445778899999999999999999999


Q ss_pred             eCCCCCCCCCC
Q psy7040         403 NKGGPGEPSDP  413 (716)
Q Consensus       403 n~~g~~~~s~~  413 (716)
                      |..|.|.++..
T Consensus        92 n~~G~g~~~~~  102 (116)
T 2edb_A           92 NNAGEGVPLYE  102 (116)
T ss_dssp             ETTEECSCEEE
T ss_pred             eCCccCCCCcc
Confidence            99999986543

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=2.1e-10  Score=93.41  Aligned_cols=111  Identities=22%  Similarity=0.310  Sum_probs=90.4

Q ss_pred             CCCCCCCCCCceEeecCCCCCcccc--cccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEE
Q psy7040         406 GPGEPSDPTAPHIARAKKVSPYINR--DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK  483 (716)
Q Consensus       406 g~~~~s~~~~~~~~~~~~~~P~~~~--~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  483 (716)
                      |.|.++.....+.......+|.+..  .....+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ..++.+........
T Consensus         2 G~s~p~~~~~~v~~~~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~   80 (118)
T 2e7c_A            2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTV   80 (118)
T ss_dssp             CCCCCCCCCCCCCCCCCSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEE
T ss_pred             CcCCccccCCCEEEEeeccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEE
Confidence            5666776666665556566777742  24567899999999999999999999999999999886 45566666777788


Q ss_pred             EEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       484 l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      |.|.++...|.|.|+|.|.|..|.....+.+.+.
T Consensus        81 L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  114 (118)
T 2e7c_A           81 FFVRQAARSDSGEYELSVQIENMKDTATIRIRVV  114 (118)
T ss_dssp             EEESSCCTTTCEEEEEEEECSSCEECCEEEEEEE
T ss_pred             EEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            9999999999999999999999988877776654

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.23  E-value=7.8e-11  Score=94.22  Aligned_cols=92  Identities=17%  Similarity=0.308  Sum_probs=72.6

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcE-EEecccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-IPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      .+|..|.+..++.+++.|+|++|...+| .|.+|+|+|+..+...| ........+++.|.+|.|++.|.|+|+|.|..|
T Consensus         9 ~~P~~l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G   87 (108)
T 2djs_A            9 STVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAG   87 (108)
T ss_dssp             CCCSCCEEEEECSSEEEEECCCCSCCSS-CEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEEEEEEEESSC
T ss_pred             CCCcceEEEecCCCEEEEEECCCCCCCC-eEEEEEEEEEECCCCCcceeEEecCccEEEEcCCCCCCEEEEEEEEEeCCE
Confidence            3556688889999999999999975444 59999999987765433 122234458999999999999999999999999


Q ss_pred             cCCCccccceEEec
Q psy7040         135 ESEPLETFSSIIAR  148 (716)
Q Consensus       135 ~~~~s~~~~~~~~~  148 (716)
                      .+.+|......+..
T Consensus        88 ~g~~S~~~~~~T~~  101 (108)
T 2djs_A           88 YGKFSGKMCFQTLT  101 (108)
T ss_dssp             EEEECCCEEEECCC
T ss_pred             ECCCCCCEEEEeCC
Confidence            99988776665543

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.23  E-value=2.2e-11  Score=98.85  Aligned_cols=100  Identities=19%  Similarity=0.266  Sum_probs=79.0

Q ss_pred             EecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEE
Q psy7040         317 EAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE  396 (716)
Q Consensus       317 ~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~  396 (716)
                      .+.+...+|.+|.++.+...+.+++.|+|.+|..  + .+.+|.|+|+..+...|...  .......+.|.+|.+++.|.
T Consensus        10 ~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~--~-~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~   84 (115)
T 1x5z_A           10 QVITQTGVPGQPLNFKAEPESETSILLSWTPPRS--D-TIANYELVYKDGEHGEEQRI--TIEPGTSYRLQGLKPNSLYY   84 (115)
T ss_dssp             CCCCCSCCCCCCEEEEEECSSSSEEEEEEECCSC--C-CCCEEEECBEESSSCCCBCC--EECSSSEEEEECCCTTCEEE
T ss_pred             EEECCCCCCCCCccCEeeeCCCCEEEEEEcCCCC--C-CccEEEEEEEeCCCCCceEE--ecCCCcEEEECCCCCCCeEE
Confidence            3344556788999999999999999999999754  2 68999999998765555322  23456899999999999999


Q ss_pred             EEEEEEeCCCCCCCCCCCCceEeec
Q psy7040         397 FRVLAVNKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       397 ~~v~a~n~~g~~~~s~~~~~~~~~~  421 (716)
                      |+|+|.|..|.|.++......+...
T Consensus        85 ~~V~A~n~~G~g~~S~~~~~~T~~~  109 (115)
T 1x5z_A           85 FRLAARSPQGLGASTAEISARTMQS  109 (115)
T ss_dssp             ECEEEECSSCEEEECCCEEEECCCC
T ss_pred             EEEEEECCCcccCCCcCEEEecCCC
Confidence            9999999999998887665554443

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=6.5e-11  Score=95.67  Aligned_cols=86  Identities=19%  Similarity=0.273  Sum_probs=67.9

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .||..|++...+ +++.|+|++|...+ +.|.+|+|+|+......+........++++|.+|.+++.|.|+|+|.|..|.
T Consensus        19 ~~P~~l~~~~~~-~sv~l~W~~P~~~n-g~i~gY~i~y~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~   96 (116)
T 2edb_A           19 DQPSSLHVRPQT-NCIIMSWTPPLNPN-IVVRGYIIGYGVGSPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGE   96 (116)
T ss_dssp             CCCSCEEEEECS-SCEEEEECCCSCTT-BCCCEEEEEEEESSTTSEEEEEETTCCEEEECSCCSSSBEEEEEEEEETTEE
T ss_pred             CCCCCeEEEECC-CEEEEEEcCCCCCC-CceeEEEEEEEeCCCCeEEEEeCCCeeEEEeCCCCCCCEEEEEEEEEeCCcc
Confidence            456668888888 99999999997654 4599999999864433343333445689999999999999999999999999


Q ss_pred             CCCccccc
Q psy7040         136 SEPLETFS  143 (716)
Q Consensus       136 ~~~s~~~~  143 (716)
                      +.++....
T Consensus        97 g~~~~~~~  104 (116)
T 2edb_A           97 GVPLYESA  104 (116)
T ss_dssp             CSCEEECC
T ss_pred             CCCCccee
Confidence            98765443

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.23  E-value=4e-11  Score=97.65  Aligned_cols=93  Identities=26%  Similarity=0.511  Sum_probs=76.2

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCC-CCcEEEecc-cCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE-TGVWIPVGK-TREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      .+.||..+.+...+.+++.|+|++|. +++.++.+|+|+|+..+ ...|..+.. ...+.+.|.+|.+++.|.|+|+|.|
T Consensus        15 ~P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n   93 (117)
T 1uem_A           15 LPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAIN   93 (117)
T ss_dssp             SCBCCCCCEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEEEEEEEE
T ss_pred             CccCCCCCEEEEecCCEEEEEEeCCC-CCCcCceEEEEEEEECCCCCceeEcccccCcCEEEECCCCCCCEEEEEEEEEC
Confidence            34566678888999999999999987 56677999999998764 567776543 3468999999999999999999999


Q ss_pred             cCccCCCccccceEEe
Q psy7040         132 KEGESEPLETFSSIIA  147 (716)
Q Consensus       132 ~~g~~~~s~~~~~~~~  147 (716)
                      ..|.+.++.....+..
T Consensus        94 ~~G~s~~S~~~~~v~t  109 (117)
T 1uem_A           94 PQGLSDPSPMSDPVRT  109 (117)
T ss_dssp             TTEEEEECCCCCCEEC
T ss_pred             CCccCCCcCCCccEEc
Confidence            9999988877764433

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.23  E-value=3.3e-11  Score=99.07  Aligned_cols=103  Identities=19%  Similarity=0.307  Sum_probs=78.4

Q ss_pred             cCCCCCCC-CCCCcEEEeeeCCeEEEEecCCCCC-CCccceEEEEEEeecCCCceEEEe----eecCCCCeEEecCCCCC
Q psy7040         319 KNPFNQPG-KPGTPEIKDFDTDFVELAWTPPEQN-GGSPIVGYIIEKKEKYSPIWEKCA----QTEGDTPKGKVLDLIEG  392 (716)
Q Consensus       319 ~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~p~~~-~~~~i~~y~v~~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~~  392 (716)
                      .+....|. +|.++.+...+.+++.|+|.+|..+ .++.|.+|.|+|+..+...|....    ........+.|.+|.++
T Consensus         9 ~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   88 (122)
T 1va9_A            9 STEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKF   88 (122)
T ss_dssp             CSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSS
T ss_pred             ECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEEeCCCCCC
Confidence            34446675 7889999999999999999998652 345799999999987644332211    12344588999999999


Q ss_pred             CeEEEEEEEEeCCCCCCCCCCCCceEeec
Q psy7040         393 NQYEFRVLAVNKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       393 ~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~  421 (716)
                      +.|.|+|+|.|..|.|.+|......+...
T Consensus        89 t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~  117 (122)
T 1va9_A           89 AQYGVVVQAFNRAGTGPSSSEINATTLES  117 (122)
T ss_dssp             CCEEEEEEEEETTEECCCCCCEECCCCSS
T ss_pred             CEEEEEEEEEcCCCCCCCccCEEEEeCCC
Confidence            99999999999999998887765554443

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.23  E-value=2e-10  Score=104.30  Aligned_cols=80  Identities=15%  Similarity=0.228  Sum_probs=60.1

Q ss_pred             cccccccEEEecCCeEEEEEE-EeccCC-CeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         429 NRDQLSDIKVRAGSNFEFDIN-VIGEPI-PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       429 ~~~~~~~~~~~~g~~~~~~~~-v~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      .......+.+..|+.+.|.|. +.+.|. +.+.|++++..+................|.|.++...|.|.|+|.+.|..+
T Consensus        11 ~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   90 (201)
T 3s97_C           11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSI   90 (201)
T ss_dssp             CSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGG
T ss_pred             CcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCC
Confidence            334456788999999999999 889998 999999998776422211222223345799999999999999999998665


Q ss_pred             ce
Q psy7040         507 TD  508 (716)
Q Consensus       507 ~~  508 (716)
                      ..
T Consensus        91 ~~   92 (201)
T 3s97_C           91 TK   92 (201)
T ss_dssp             TE
T ss_pred             Cc
Confidence            43

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=7.6e-11  Score=96.87  Aligned_cols=101  Identities=22%  Similarity=0.348  Sum_probs=75.6

Q ss_pred             EEecCCCCCCC-CCCCcEEE-eeeCCeEEEEecCCC-CCCCccceEEEEEEeecCC---CceEEEeeecCCCCeEEecCC
Q psy7040         316 IEAKNPFNQPG-KPGTPEIK-DFDTDFVELAWTPPE-QNGGSPIVGYIIEKKEKYS---PIWEKCAQTEGDTPKGKVLDL  389 (716)
Q Consensus       316 ~~~~~~~~~p~-~p~~~~~~-~~~~~~i~l~W~~p~-~~~~~~i~~y~v~~~~~~~---~~~~~~~~~~~~~~~~~i~~l  389 (716)
                      +.+.+...+|. +|.++.+. ..+.+++.|+|.+|. ...++.|.+|+|+|+....   ..|..  ........+.|.+|
T Consensus         9 v~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~~~l~~L   86 (124)
T 2dbj_A            9 ILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLE--EVGQNGSRARISVQ   86 (124)
T ss_dssp             CCCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEEEEEE--EEESTTSCEEEECC
T ss_pred             EEEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCccceEE--EeCCCcceEEecCC
Confidence            33444556666 78888888 578899999999973 2344589999999974332   22322  23457789999999


Q ss_pred             CCCCeEEEEEEEEeCCCCCCCCCCCCceE
Q psy7040         390 IEGNQYEFRVLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       390 ~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~  418 (716)
                      .+++.|.|+|+|.|..|.|++|......+
T Consensus        87 ~p~t~Y~~~V~A~n~~G~Gp~S~~~~~~T  115 (124)
T 2dbj_A           87 VHNATCTVRIAAVTRGGVGPFSDPVKIFI  115 (124)
T ss_dssp             CSSSEEEECEEEEESSCBCCCCCCEEEEC
T ss_pred             CCCCEEEEEEEEECCCccCCCCCCEEEEc
Confidence            99999999999999999999887655444

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.5e-11  Score=100.94  Aligned_cols=114  Identities=18%  Similarity=0.282  Sum_probs=81.8

Q ss_pred             CCCCCCcccceEEecCCCCCC-CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC---ceEEEeeecCC
Q psy7040         305 GKSEPLTTTASIEAKNPFNQP-GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP---IWEKCAQTEGD  380 (716)
Q Consensus       305 g~~~~~~~~~~~~~~~~~~~p-~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~---~~~~~~~~~~~  380 (716)
                      |.+.++...   .+.+....| .+|.++.+...+.+++.|+|.+|... ++.|.+|.|+|+.....   .|...  ....
T Consensus         1 G~g~~S~~~---~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~-~g~i~~Y~v~~~~~~~~~~~~~~~~--~~~~   74 (121)
T 2dlh_A            1 GSSGSSGPV---LTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEP-NGQIQGYRVYYTMDPTQHVNNWMKH--NVAD   74 (121)
T ss_dssp             CCCCCCSSS---CSCCCCCCCCSCCEEEEECCCSSSBCCEEEECCSCC-CSCEEEEEEECCSCTTSCTTTSCCC--CCSS
T ss_pred             CCCCCCCCE---EEECCCcCCCCCCcccEEEecCCCEEEEEECCCCCC-CCcEeEEEEEEEeCCCCCccccEEE--ecCC
Confidence            344444443   223333455 48889999888999999999998654 44799999999876432   22221  2346


Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCC
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKV  424 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~  424 (716)
                      ...+.|.+|.+++.|.|+|+|.|..|.|.++....+.+....+.
T Consensus        75 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~  118 (121)
T 2dlh_A           75 SQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGP  118 (121)
T ss_dssp             CSEECCBSCCSSCEEEEEEEEEESSCBCCCCCCEEEECCCCCSC
T ss_pred             ceEEEecCCCCCCEEEEEEEEEeCCccCCCCCCEEEECCCCCCC
Confidence            77899999999999999999999999999887655555444333

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.1e-10  Score=96.27  Aligned_cols=90  Identities=17%  Similarity=0.308  Sum_probs=74.8

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCC-CCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDD-GGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~-~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      ||..+++...+.+++.|+|++|..+ .++++.+|+|+|+..+...|........+++.|.+|.+++.|.|+|+|.|..|.
T Consensus        31 ~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  110 (124)
T 2ed9_A           31 PPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGT  110 (124)
T ss_dssp             CCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCCEEEECSSCSEEEEECCCSSCEEEECEEEECSSCB
T ss_pred             CCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcceEEecCCcCEEEEcCCCCCCEEEEEEEEEcCCcc
Confidence            4556888899999999999998753 345699999999988776666554555689999999999999999999999999


Q ss_pred             CCCccccceEE
Q psy7040         136 SEPLETFSSII  146 (716)
Q Consensus       136 ~~~s~~~~~~~  146 (716)
                      +.+|......+
T Consensus       111 g~~S~~~~~~T  121 (124)
T 2ed9_A          111 GPPSNWYTAET  121 (124)
T ss_dssp             CCCCCCEEEEC
T ss_pred             CCCCCCEEEEC
Confidence            99887766554

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.21  E-value=7.7e-10  Score=99.46  Aligned_cols=176  Identities=20%  Similarity=0.211  Sum_probs=120.7

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEc-----CCCCcEEE---ecccCCCeEEecC-CCCCcEEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYD-----PETGVWIP---VGKTREPEMDVTG-LTPGHEYK  124 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~-----~~~~~~~~---~~~~~~~~~~i~~-L~~~~~y~  124 (716)
                      .+++|.++++....-. ..|+|+++.. .+. -..|.|+|+.     .+...|..   |.....+.+.|.+ +..+..|.
T Consensus         6 ~lp~P~nv~~~s~n~~-~iL~W~p~~~-~~~-~~~Y~V~y~~~~~~~~~~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~Y~   82 (206)
T 4doh_B            6 ILPAPQQLSVLSTNMK-HLLMWSPVIA-PGE-TVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYN   82 (206)
T ss_dssp             CCCCCCCCEEEEETTE-EEEECCCCCC-SSS-CCEEEEEEEEHHHHHHSTTCCEEEEEEEEESSSEEECTTTCCSSSCEE
T ss_pred             cCCCCCeeEEEEeCCE-EEEEECCCCC-CCC-CEEEEEEEEEeccccCCCccceecccccCCCCCEEcCCccccCCCCEE
Confidence            3577888888887766 7999999852 223 4679999984     45677875   4445568999995 77788999


Q ss_pred             EEEEEEecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEE
Q psy7040         125 FRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTA  204 (716)
Q Consensus       125 ~~v~a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a  204 (716)
                      +||+|.+..+.|.++.........                                                        
T Consensus        83 ~RVrA~~~~~~S~w~~~~~f~~~~--------------------------------------------------------  106 (206)
T 4doh_B           83 LRVRATLGSQTSAWSILKHPFNRQ--------------------------------------------------------  106 (206)
T ss_dssp             EEEEEEETTEECCCEECSSCBCGG--------------------------------------------------------
T ss_pred             EEEEEEcCCCccCccccccccchh--------------------------------------------------------
Confidence            999999988888776543221110                                                        


Q ss_pred             EeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEE
Q psy7040         205 ENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE  284 (716)
Q Consensus       205 ~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~  284 (716)
                                     .+.+.||.  +.+. ....++.|.|.+|.     .+..|.|.+...+...-............+.
T Consensus       107 ---------------~t~i~PP~--v~v~-~~~~~i~V~~~~p~-----~~l~Y~v~y~~~~~~~~~~~~~~~~~~~~~~  163 (206)
T 4doh_B          107 ---------------STILTRPG--MEIT-KDGFHLVIELEDLG-----PQFEFLVAYWRREPGAEEHVKMVRSGGIPVH  163 (206)
T ss_dssp             ---------------GCBCCCCC--EEEE-EETTEEEEEECCCC-----TTCEEEEEEEESSSSCCCEEEEECCSSSEEE
T ss_pred             ---------------hcccCCCe--EEEE-eCCCEEEEEecCCC-----CcEEEEEEEEEcCCCceeEEeEEccCCeEEE
Confidence                           02344554  5665 57889999999752     4778999887654432211111112346899


Q ss_pred             EcCCCCCCeEEEEEEEEcCC--CCCCCCc
Q psy7040         285 VEGLIPNHKYKFRVRAVNKQ--GKSEPLT  311 (716)
Q Consensus       285 i~~L~p~~~y~~~v~a~n~~--g~~~~~~  311 (716)
                      |.+|.|++.|.|+|+|....  +.+..|.
T Consensus       164 i~~L~p~t~Ycv~Vra~~~~~~~~g~~S~  192 (206)
T 4doh_B          164 LETMEPGAAYCVKAQTFVKAIGRYSAFSQ  192 (206)
T ss_dssp             EEECCSSSCEEEEEEEEEGGGTEECCCCC
T ss_pred             EeCCCCCCcEEEEEEEEecCCCCCCCCCC
Confidence            99999999999999998742  4444443

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=9e-11  Score=93.90  Aligned_cols=90  Identities=19%  Similarity=0.251  Sum_probs=70.8

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCC---CCcEEEecccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE---TGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~---~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      .++..|++..++.+++.|+|++|...+ +.|.+|+|+|+..+   ...+... ....+.+.|.+|.|++.|.|+|+|.|.
T Consensus         9 ~~p~~l~~~~~~~~sv~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~   86 (109)
T 2e7h_A            9 PAVSDIRVTRSSPSSLSLAWAVPRAPS-GAVLDYEVKYHEKGAEGPSSVRFL-KTSENRAELRGLKRGASYLVQVRARSE   86 (109)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCCCSS-SCCCEEEEEEEETTCCSTTTSEEE-EESSSEEEEESCCTTSCEEEEEEEECS
T ss_pred             CCCCccEEEecCCCEEEEEeCCCCCCC-CcEeEEEEEEEECCCCCCceeEEE-ccCCCEEEECCCCCCCeEEEEEEEEeC
Confidence            345668899999999999999997444 45999999998765   2223322 334579999999999999999999999


Q ss_pred             CccCCCccccceEEe
Q psy7040         133 EGESEPLETFSSIIA  147 (716)
Q Consensus       133 ~g~~~~s~~~~~~~~  147 (716)
                      .|.+.+|......+.
T Consensus        87 ~G~g~~S~~~~~~T~  101 (109)
T 2e7h_A           87 AGYGPFGQEHHSQTQ  101 (109)
T ss_dssp             SCBCCCCSCEECCCC
T ss_pred             CccCCCCCCEEEEcC
Confidence            999998876665554

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.21  E-value=2.5e-10  Score=104.72  Aligned_cols=70  Identities=23%  Similarity=0.315  Sum_probs=56.5

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....++.+..    ..|.|.++...|.|.|+|.
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~G~Y~C~   83 (212)
T 1f97_A            8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDNGEYTCM   83 (212)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGCEEEEEE
T ss_pred             CCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccCeEEEEE
Confidence            34578999999999999999999999999987552            1233343332    5899999999999999999


Q ss_pred             EEcCCC
Q psy7040         501 VKNSWG  506 (716)
Q Consensus       501 a~n~~g  506 (716)
                      |.|..|
T Consensus        84 ~~~~~g   89 (212)
T 1f97_A           84 VSEEGG   89 (212)
T ss_dssp             EEETTS
T ss_pred             EEccCC
Confidence            999877

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=6.5e-11  Score=94.31  Aligned_cols=90  Identities=20%  Similarity=0.328  Sum_probs=72.9

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccC
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGES  136 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~  136 (716)
                      ||..+++..++.+++.|+|++|...++ .+.+|+|+|+..+...|..... ..+++.|.+|.|++.|.|+|+|.|..|.+
T Consensus        10 ~P~~l~~~~~~~~si~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g   87 (106)
T 2ed8_A           10 PVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIEV-DGLSYKLEGLKKFTEYSLRFLAYNRYGPG   87 (106)
T ss_dssp             CCEEEEEECSSTTEEEEEEECCSSCSS-CCCEEEEEEEETTTCCEEEEEE-CSSCEEEESCCTTCEEEEEEEEECSSCEE
T ss_pred             CCceeEEEecCCCEEEEEECCCCCCCC-CeeEEEEEEEECCCCceEEEeC-CccEEEECCCCCCCEEEEEEEEEeCCccC
Confidence            444567777888999999999975444 6999999999887777765543 35899999999999999999999999998


Q ss_pred             CCccccceEEec
Q psy7040         137 EPLETFSSIIAR  148 (716)
Q Consensus       137 ~~s~~~~~~~~~  148 (716)
                      .++......+..
T Consensus        88 ~~S~~~~~~T~~   99 (106)
T 2ed8_A           88 VSTDDITVVTLS   99 (106)
T ss_dssp             EECCCEEEECCC
T ss_pred             CCcCCEEEEcCC
Confidence            888776665543

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.21  E-value=4.5e-11  Score=98.16  Aligned_cols=95  Identities=31%  Similarity=0.506  Sum_probs=76.7

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEe---CCCCCeEEcccc--CcccceEEEcCCCCCCeEE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMD---EATGRWTPAGET--EGPVTGLEVEGLIPNHKYK  295 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~---~~~~~~~~~~~~--~~~~~~~~i~~L~p~~~y~  295 (716)
                      ++|.+|.+ +.+.....+++.|+|.++. +++.++.+|.|+++.   .....|..+...  ......+.+.+|.|++.|.
T Consensus        16 ~~P~~P~~-l~~~~~~~~sv~l~W~p~~-~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~L~p~t~Y~   93 (124)
T 1wis_A           16 ELPGPPTN-LGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYS   93 (124)
T ss_dssp             CCCCCCEE-EEEESCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEEC
T ss_pred             CCCccCCC-CEEEEecCCEEEEEEECCC-CCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeCCCCCCCEEE
Confidence            56777777 7788888999999998665 566789999999987   356778765432  3557899999999999999


Q ss_pred             EEEEEEcCCCCCCCCcccceEE
Q psy7040         296 FRVRAVNKQGKSEPLTTTASIE  317 (716)
Q Consensus       296 ~~v~a~n~~g~~~~~~~~~~~~  317 (716)
                      |+|+|.|..|.+.++..+..+.
T Consensus        94 frV~A~N~~G~s~~S~~~~~~~  115 (124)
T 1wis_A           94 FRMRQVNIVGTSPPSQPSRKIQ  115 (124)
T ss_dssp             CCCEEECSSCBCCCCCCCCCEE
T ss_pred             EEEEEEECCccCCCcCCccceE
Confidence            9999999999998888654333

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.21  E-value=7.3e-11  Score=95.34  Aligned_cols=96  Identities=21%  Similarity=0.276  Sum_probs=75.2

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCC-CCCCccceEEEEEEeecCCC---ceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPE-QNGGSPIVGYIIEKKEKYSP---IWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~-~~~~~~i~~y~v~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      .+|.+|.++.+...+.++|.|+|.+|. ...++.|.+|.|+|+..+..   .|.. .........+.|.+|.|++.|.|+
T Consensus         7 ~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~   85 (114)
T 1x4y_A            7 GPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKK-DMVEGDRYWHSISHLQPETSYDIK   85 (114)
T ss_dssp             SCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCC-EEEETTCCEEEECSCCTTCEEEEE
T ss_pred             CCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceee-EecCCcEeEEEcCCCCCCCEEEEE
Confidence            456788889999999999999999975 24556899999999876533   2321 223455678999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceEe
Q psy7040         399 VLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      |+|+|..|.|.+|......+.
T Consensus        86 V~A~n~~G~g~~S~~v~~~T~  106 (114)
T 1x4y_A           86 MQCFNEGGESEFSNVMICETK  106 (114)
T ss_dssp             EEEECTTCCCCCCCCEEEECC
T ss_pred             EEEEcCCccCCCcCCEEEEeC
Confidence            999999999998876544443

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.21  E-value=9.8e-10  Score=99.92  Aligned_cols=184  Identities=16%  Similarity=0.116  Sum_probs=122.6

Q ss_pred             CCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc-CcccceEEEcCCC--CCCeEEEEEEE
Q psy7040         224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-EGPVTGLEVEGLI--PNHKYKFRVRA  300 (716)
Q Consensus       224 ~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~--p~~~y~~~v~a  300 (716)
                      .+|.+ +.+.... ....|+|+++...+ .....|.++++..+...|...... ......+.|.++.  +...|.++|+|
T Consensus        10 p~P~n-v~~~s~n-~~~iL~W~p~~~~~-~~~~~Y~Vqy~~~~~~~W~~~~~C~~~~~~~Cdlt~~~~~~~~~Y~~RV~A   86 (221)
T 4doh_R           10 PKPAN-ITFLSIN-MKNVLQWTPPEGLQ-GVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYARVRA   86 (221)
T ss_dssp             -CCEE-EEEEEET-TEEEEEEECCCCSS-CCCCEEEEEEEETTSCCCEECGGGSSBSSSEEECTTTTCCSSCCEEEEEEE
T ss_pred             CCCce-eEEEEEC-CcEEEEEcCCCCCC-CCCeEEEEEEEECCCCCceecccccCCCCCEEeCCCccccCCCCEEEEEEE
Confidence            34666 6776644 45569999754422 247899999998777789775432 3456788998875  56689999999


Q ss_pred             EcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCC----CCc--------cceEEEEEEeecCC
Q psy7040         301 VNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQN----GGS--------PIVGYIIEKKEKYS  368 (716)
Q Consensus       301 ~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~----~~~--------~i~~y~v~~~~~~~  368 (716)
                      ....+.|.++.........  ....++|. +.+. ..+..|.|.|.+|...    ++.        ....|+|.|...++
T Consensus        87 ~~g~~~S~w~~~~~F~p~~--~t~igPP~-v~v~-~~~~~l~V~~~~P~~~~~~~~~~~~s~~~i~~~l~Y~V~y~~~~~  162 (221)
T 4doh_R           87 IWGTKCSKWAESGRFYPFL--ETQIGPPE-VALT-TDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKS  162 (221)
T ss_dssp             ESSSCBCCCEECCCBCHHH--HCBCCCCE-EEEE-CCSSCEEEEEECCBCCCSSTTSCCCBHHHHSTTCEEEEEEEETTT
T ss_pred             EcCCcccCCEecCceechh--hCccCCCE-EEEE-ECCCEEEEEEeCCCcccccCCCCceEHHHhcCceEEEEEEEECCC
Confidence            9977776655432222111  12345554 7777 5678999999987642    121        13589999988764


Q ss_pred             CceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC--CCCCCCCCCCCce
Q psy7040         369 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK--GGPGEPSDPTAPH  417 (716)
Q Consensus       369 ~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~--~g~~~~s~~~~~~  417 (716)
                      .... ..  ......+.|.+|.|++.|.|+|+|...  .|.|.+|....+.
T Consensus       163 ~~~~-~~--~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~  210 (221)
T 4doh_R          163 NRTW-SQ--CVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCAR  210 (221)
T ss_dssp             TEEE-EE--EECSSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEEEE
T ss_pred             CcEE-EE--eecCcEEEEecCCCCCcEEEEEEEEEcCCCCCCCCCCCEeEe
Confidence            3221 11  124568999999999999999999965  5667666544333

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.21  E-value=5.6e-11  Score=94.94  Aligned_cols=89  Identities=25%  Similarity=0.365  Sum_probs=73.8

Q ss_pred             CCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       321 ~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      ...+|.+|. +.+...+.+++.|+|.+|.. .++.|.+|.|+|+..+...|... .......++.|.+|.+++.|.|+|+
T Consensus         4 ~~~~P~~p~-~~v~~~~~~sv~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~   80 (107)
T 2dn7_A            4 GSSGPGRPT-MMISTTAMNTALLQWHPPKE-LPGELLGYRLQYCRADEARPNTI-DFGKDDQHFTVTGLHKGTTYIFRLA   80 (107)
T ss_dssp             CCCCCCCCE-EEEEECSTTEEEEEEECCSS-CSSCCCEEEEEEEETTCSSCEEE-EEETTCCEEEEECCCTTCEEEEEEE
T ss_pred             CCCCCCCCc-EeEEecCCCEEEEEECCCCC-CCCceeEEEEEEEECCCCCCEEE-EeCCCccEEEeCCCCCCCEEEEEEE
Confidence            346677777 77777789999999999874 44579999999998876677654 3456778999999999999999999


Q ss_pred             EEeCCCCCCCCC
Q psy7040         401 AVNKGGPGEPSD  412 (716)
Q Consensus       401 a~n~~g~~~~s~  412 (716)
                      |.|..|.|.++.
T Consensus        81 A~n~~G~g~~s~   92 (107)
T 2dn7_A           81 AKNRAGLGEEFE   92 (107)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEcCCcccCCee
Confidence            999999988776

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.21  E-value=7.1e-11  Score=91.51  Aligned_cols=84  Identities=29%  Similarity=0.505  Sum_probs=68.4

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEe--cccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV--GKTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +.||.+|++..++.+++.|+|++|.    .++.+|+|+|+..+.+.....  .....++++|.+|.|++.|.|+|+|.|.
T Consensus         2 l~~P~~l~~~~~~~~si~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~   77 (94)
T 1j8k_A            2 IDRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHD   77 (94)
T ss_dssp             CCCCCCCEEEEEETTEEEEECCCCS----SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSS
T ss_pred             CCCCCccEEEeecCCEEEEEEcCCC----CCcceEEEEEEeCCCCCceEEecCCCCccEEEeCCCCCCCEEEEEEEEEcC
Confidence            5788999999999999999999885    359999999987665433222  2234589999999999999999999999


Q ss_pred             CccCCCcccc
Q psy7040         133 EGESEPLETF  142 (716)
Q Consensus       133 ~g~~~~s~~~  142 (716)
                      .|.+.++...
T Consensus        78 ~g~s~p~~~~   87 (94)
T 1j8k_A           78 DMESQPLIGT   87 (94)
T ss_dssp             SCCCCCEEEE
T ss_pred             CCcCCCEEeE
Confidence            9988776543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.20  E-value=2.1e-11  Score=121.25  Aligned_cols=228  Identities=18%  Similarity=0.122  Sum_probs=139.2

Q ss_pred             ccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCC--CCCeEEeEEeCCeEEEEEECCCC-CCCCccceEEE
Q psy7040         184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP--GGPLKVSNVHAEGVTLDWKVPDD-DGGQPIEKYVV  260 (716)
Q Consensus       184 ~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p--~~~~~~~~~~~~~~~l~W~~p~~-~~~~~~~~y~v  260 (716)
                      +..|.|.+++..|+|.|+|.|.|..|.....+.|.|..+|...  ..........+..+.|.|..... ..+.+...+.+
T Consensus        80 ~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W  159 (339)
T 3o4o_C           80 DGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQW  159 (339)
T ss_dssp             TTEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCC
T ss_pred             CCeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEE
Confidence            5689999999999999999999999988888999998876542  11122344568899999994211 01222222222


Q ss_pred             EEEeC---CC-CCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEee
Q psy7040         261 DKMDE---AT-GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF  336 (716)
Q Consensus       261 ~~~~~---~~-~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~  336 (716)
                      .....   .. ......    .....+.|.++...+.+.|+|.|.|..|........                       
T Consensus       160 ~k~g~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~-----------------------  212 (339)
T 3o4o_C          160 YKDSLLLDKDNEKFLSV----RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITR-----------------------  212 (339)
T ss_dssp             EESSCBCCTTCSSEEEC----TTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEE-----------------------
T ss_pred             ecCCeeCCCCCceeEEc----CCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEE-----------------------
Confidence            21110   00 111111    123589999999999999999999966532110000                       


Q ss_pred             eCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCc
Q psy7040         337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP  416 (716)
Q Consensus       337 ~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~  416 (716)
                         .+.|.-..+...                                                                 
T Consensus       213 ---~~~l~V~~~~~~-----------------------------------------------------------------  224 (339)
T 3o4o_C          213 ---SIELRIKKKKEE-----------------------------------------------------------------  224 (339)
T ss_dssp             ---EEEEEEECCCCC-----------------------------------------------------------------
T ss_pred             ---EEEEEEEcCCCC-----------------------------------------------------------------
Confidence               000000000000                                                                 


Q ss_pred             eEeecCCCCCcccccccccEEEecCCeEEEEEEE---eccC-CCeEEEEeCCeEecc---------CCcEEEEeCCC---
Q psy7040         417 HIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV---IGEP-IPTKEWLCNDITIIS---------KDRFKIVNDDK---  480 (716)
Q Consensus       417 ~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v---~~~p-~~~~~W~~~~~~~~~---------~~~~~~~~~~~---  480 (716)
                             .+|.+... ...+.+..|..+.|.|.+   .+.| .+.+.|++++..+..         ..++.+...+.   
T Consensus       225 -------~~P~i~~~-~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  296 (339)
T 3o4o_C          225 -------TIPVIISP-LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYI  296 (339)
T ss_dssp             -------CCCEECCC-SCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEE
T ss_pred             -------CCCEEecC-CceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEE
Confidence                   01111100 112345667778889999   8888 889999998876432         22232222222   


Q ss_pred             eEEEEECCCCCCCc-eeEEEEEEcCCCceeeEEEE
Q psy7040         481 STKLKVFDSKRGDS-GIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       481 ~~~l~i~~l~~~~~-~~y~~~a~n~~g~~~~s~~~  514 (716)
                      ...|.|.++...|. |.|+|.|.|..|..+..+.+
T Consensus       297 ~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~  331 (339)
T 3o4o_C          297 EVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV  331 (339)
T ss_dssp             EECCEECSSCCCSCCCCCEEEEEETTEEECCBCCC
T ss_pred             EEEEEEEEechhhcCccEEEEEEeccCceEEEEEh
Confidence            12799999999997 99999999999987765443

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.2e-10  Score=92.99  Aligned_cols=90  Identities=27%  Similarity=0.405  Sum_probs=72.5

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC-cEEEecccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-VWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~-~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      .||..+.+..++.+++.|+|+++   ++.++.+|+|+|+..... .|..+.....+.+.|.+|.+++.|.|+|+|.|..|
T Consensus         9 ~~P~~~~~~~~~~~sv~l~W~~~---~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   85 (106)
T 2dju_A            9 KPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIG   85 (106)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECC---CSSCCSEEEEEEEETTCCSCCCCBCCCCSSEEEEESCCTTCEEEEEEEEECSSC
T ss_pred             cCCCCcEEEeccCCEEEEEEcCC---CCCCceEEEEEEEECCCCCCeEEccCCCccEEEEeCCCCCcEEEEEEEEEeCCc
Confidence            34555778888999999999987   345699999999876643 56655544568999999999999999999999999


Q ss_pred             cCCCccccceEEec
Q psy7040         135 ESEPLETFSSIIAR  148 (716)
Q Consensus       135 ~~~~s~~~~~~~~~  148 (716)
                      .+.++......+..
T Consensus        86 ~~~~S~~~~~~T~~   99 (106)
T 2dju_A           86 RGPPSEAVRARTGE   99 (106)
T ss_dssp             BCCCCCCEEEECCC
T ss_pred             cCCCcccEEeEcCC
Confidence            99988776655543

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.20  E-value=3.7e-11  Score=96.79  Aligned_cols=98  Identities=23%  Similarity=0.269  Sum_probs=77.3

Q ss_pred             cCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         319 KNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       319 ~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      .+...+|.+|.++.+.....+++.|+|.+|...+ +.|.+|.|+|+..+...+. ..........+.|.+|.+++.|.|+
T Consensus         5 ~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~   82 (111)
T 1x5l_A            5 SSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPN-GIILEYEIKYYEKDKEMQS-YSTLKAVTTRATVSGLKPGTRYVFQ   82 (111)
T ss_dssp             CCSCCCCCCCCCEECSCBCSSCEEEEECCCSCCC-SCCCEEEEEEEESSSCCSS-CEEEEESSSEEEECSCCTTCEEEEC
T ss_pred             EcCCCCCCCCceEEEEEcCCCEEEEEECCCCCCC-CEEEEEEEEEEECCCCcee-EEEecCCCCEEEEcCCCCCCEEEEE
Confidence            3455778899999998889999999999986554 4799999999876532221 1223456789999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceE
Q psy7040         399 VLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~~  418 (716)
                      |+|.|..|.|.+|......+
T Consensus        83 V~A~n~~G~g~~S~~~~~~T  102 (111)
T 1x5l_A           83 VRARTSAGCGRFSQAMEVET  102 (111)
T ss_dssp             EEEEETTEECCCCCCEEEEC
T ss_pred             EEEEeCCcCCCCcccEEEEc
Confidence            99999999998887655443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.19  E-value=1.7e-10  Score=114.23  Aligned_cols=123  Identities=12%  Similarity=0.104  Sum_probs=89.0

Q ss_pred             eEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCe-EEEE
Q psy7040         383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT-KEWL  461 (716)
Q Consensus       383 ~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~-~~W~  461 (716)
                      .+.|..+...+...|+|.|.|..|....+....      ...+|.+.........+..|..+.|.|.+.+.|.+. +.|+
T Consensus       195 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~------V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~  268 (331)
T 3u83_A          195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLN------VQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWT  268 (331)
T ss_dssp             EEEECCCGGGTTCEEEEEEEETTEEEEEEEECC------EEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEE
T ss_pred             EEEEEeccccCCCEEEEEEecCCCcceeeEEEE------EecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEE
Confidence            356666777888999999999876532211111      112344433333444577899999999999999998 9999


Q ss_pred             eCCeEeccCCcEEEEeCCCeEEEEEC-CCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         462 CNDITIISKDRFKIVNDDKSTKLKVF-DSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~l~i~-~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      +++..+...  ..+.    ...|.|. ++...|.|.|+|.|.|..|....++.+.|.
T Consensus       269 ~~~~~~~~~--~~~~----~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  319 (331)
T 3u83_A          269 TLNGSLPKG--VEAQ----NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT  319 (331)
T ss_dssp             ETTBSCCTT--EEEE----TTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred             ECCCccccc--ceec----CcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence            999877543  2221    2379999 899999999999999999988777766655

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.19  E-value=2.1e-10  Score=105.64  Aligned_cols=82  Identities=24%  Similarity=0.372  Sum_probs=60.4

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCC--cEEEEeCCCeEE--EEECCCCCCCceeEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTK--LKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~--l~i~~l~~~~~~~y~~~  500 (716)
                      +|.+.. .+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ...+...+....  +.|.++...|.|.|+|.
T Consensus         9 ~P~i~~-~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   87 (217)
T 2vr9_A            9 SPRIIE-HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV   87 (217)
T ss_dssp             CCEEEE-CCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred             CCEEec-CCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence            455443 2456889999999999999999999999999998876532  222333222222  26788999999999999


Q ss_pred             EEcCCCc
Q psy7040         501 VKNSWGT  507 (716)
Q Consensus       501 a~n~~g~  507 (716)
                      |.|..|.
T Consensus        88 ~~n~~g~   94 (217)
T 2vr9_A           88 AKNRVGQ   94 (217)
T ss_dssp             EEETTEE
T ss_pred             EecCCCc
Confidence            9987764

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.8e-10  Score=94.16  Aligned_cols=92  Identities=16%  Similarity=0.194  Sum_probs=75.1

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc--cCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +.||..+.+..++.+++.|+|++|.. .+.++.+|.|+|+..+...|.....  ...+.+.|.+|.+++.|.|+|+|.|.
T Consensus        18 P~~P~~l~~~~~~~~sv~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   96 (119)
T 2ed7_A           18 PSAPRDVVPVLVSSRFVRLSWRPPAE-AKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNE   96 (119)
T ss_dssp             CCCCSCCEEEEECSSCEEEECCCCSC-CSSCEEEEEEEEEESSCCCCEEEECCCTTCCEEEECSCCSSSEEEECCEEEES
T ss_pred             CcCCcceEEEecCCCEEEEEEeCCCC-CCCcEEEEEEEEEeCCCCcceeeEeecCCceEEEeCCCCCCCEEEEEEEEEcC
Confidence            34566788889999999999999875 3456999999998877666654433  33589999999999999999999999


Q ss_pred             CccCCCccccceEEe
Q psy7040         133 EGESEPLETFSSIIA  147 (716)
Q Consensus       133 ~g~~~~s~~~~~~~~  147 (716)
                      .|.+.++......+.
T Consensus        97 ~G~g~~S~~~~~~T~  111 (119)
T 2ed7_A           97 WGPGESSQPIKVATQ  111 (119)
T ss_dssp             SCBCSCCCCEEEECC
T ss_pred             CccCCCcCCEEEEeC
Confidence            999998877766554

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=99.19  E-value=3.1e-10  Score=89.18  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=66.9

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC-cEEEe-cccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-VWIPV-GKTREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~-~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      .+.||..|++.+++.+++.|+|++|... +..+.+|+|+|+..+.. .+... .....++++|.+|.|++.|.|+|+|.|
T Consensus         7 ~~~~P~~l~v~~~t~~Sv~lsW~~p~~~-~g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~~L~p~t~Y~~~V~A~~   85 (103)
T 3t04_D            7 VSSVPTKLEVVDATPTSLKISWDAYYSS-WQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYAYD   85 (103)
T ss_dssp             CCCCCCSCEEEEEETTEEEEECTTTTTT-SCCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEES
T ss_pred             cCCCCceeEEEecCCCEEEEEccCCCCC-CCccceEEEEEEECCCCCccEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEe
Confidence            4678889999999999999999998754 34599999999876532 22222 223458999999999999999999999


Q ss_pred             c--CccCC
Q psy7040         132 K--EGESE  137 (716)
Q Consensus       132 ~--~g~~~  137 (716)
                      .  .|.+.
T Consensus        86 ~~~~G~~~   93 (103)
T 3t04_D           86 TFFPGYEP   93 (103)
T ss_dssp             CCCTTCCC
T ss_pred             CCCCCCCC
Confidence            9  88776

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.19  E-value=1.9e-10  Score=112.87  Aligned_cols=230  Identities=16%  Similarity=0.055  Sum_probs=141.7

Q ss_pred             cceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCc-EEEeeeCCeEEEEecCC-----CCCCC
Q psy7040         280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP-EIKDFDTDFVELAWTPP-----EQNGG  353 (716)
Q Consensus       280 ~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~-~~~~~~~~~i~l~W~~p-----~~~~~  353 (716)
                      ...+.|.++...+.+.|+|.|.|..|........  .....+......+... ......+..+.|.|...     .....
T Consensus        61 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v--~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~  138 (315)
T 1itb_B           61 KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA--KFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL  138 (315)
T ss_dssp             SSBEECTTCCGGGCSCCEECCCSSSCCCCEECCC--EEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCC
T ss_pred             CCeEEECCCChhhCEEEEEEEeCCceEEEEEEEE--EEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCC
Confidence            3589999999999999999999887643322111  1111111111111111 12333467789999751     11111


Q ss_pred             ccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE-eCCCCCCCCCCCC-c-eEeecCCCCCcccc
Q psy7040         354 SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV-NKGGPGEPSDPTA-P-HIARAKKVSPYINR  430 (716)
Q Consensus       354 ~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~-n~~g~~~~s~~~~-~-~~~~~~~~~P~~~~  430 (716)
                      ..+..|     ..+..-.............+.|.++...+.+.|+|.|. |..|......... . +.......+|.+..
T Consensus       139 ~~i~W~-----k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~  213 (315)
T 1itb_B          139 PKLQWY-----KDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVS  213 (315)
T ss_dssp             CCCEEE-----ETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECS
T ss_pred             CEEEEE-----ECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEec
Confidence            123332     22100000000011234579999999999999999999 7777542111111 1 11112245676654


Q ss_pred             cccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEE----EEeCC--------CeEEEEECCCCCCC-ceeE
Q psy7040         431 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK----IVNDD--------KSTKLKVFDSKRGD-SGIY  497 (716)
Q Consensus       431 ~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~----~~~~~--------~~~~l~i~~l~~~~-~~~y  497 (716)
                      .....+.+..|..+.|.|.+.+.|.+.+.|++++..+.......    .....        ....|.|.++...| .|.|
T Consensus       214 ~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y  293 (315)
T 1itb_B          214 PANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPF  293 (315)
T ss_dssp             CCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCE
T ss_pred             CCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCce
Confidence            43344678999999999999999999999999999887654211    11111        23489999999999 9999


Q ss_pred             EEEEEcCCCceeeEEEEEE
Q psy7040         498 TLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       498 ~~~a~n~~g~~~~s~~~~v  516 (716)
                      +|.|.|..|....++.+.+
T Consensus       294 ~C~a~N~~G~~~~~~~l~v  312 (315)
T 1itb_B          294 TCFAKNTHGIDAAYIQLIY  312 (315)
T ss_dssp             EEEEECTTCCEEEEEEEEC
T ss_pred             EEEEecCCCceeEEEEEEe
Confidence            9999999999988877664

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.6e-10  Score=92.15  Aligned_cols=94  Identities=23%  Similarity=0.344  Sum_probs=75.5

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC-ceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP-IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      ..|.+|.++.+.....+++.|+|.++   .++.+.+|.|+++..... .|....  ......+.|.+|.+++.|.|+|+|
T Consensus         6 ~~P~~P~~~~~~~~~~~sv~l~W~~~---~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A   80 (106)
T 2dju_A            6 SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVD--GVATTRYSIGGLSPFSEYAFRVLA   80 (106)
T ss_dssp             CSCCCCEEEEEEEEETTEEEEEEECC---CSSCCSEEEEEEEETTCCSCCCCBC--CCCSSEEEEESCCTTCEEEEEEEE
T ss_pred             cCCcCCCCcEEEeccCCEEEEEEcCC---CCCCceEEEEEEEECCCCCCeEEcc--CCCccEEEEeCCCCCcEEEEEEEE
Confidence            56889999999999999999999986   245799999999876643 454332  346778999999999999999999


Q ss_pred             EeCCCCCCCCCCCCceEeec
Q psy7040         402 VNKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~~~~~  421 (716)
                      .|..|.+.++......+...
T Consensus        81 ~n~~G~~~~S~~~~~~T~~~  100 (106)
T 2dju_A           81 VNSIGRGPPSEAVRARTGEQ  100 (106)
T ss_dssp             ECSSCBCCCCCCEEEECCCS
T ss_pred             EeCCccCCCcccEEeEcCCC
Confidence            99999999887655444433

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.19  E-value=9.4e-11  Score=96.81  Aligned_cols=102  Identities=21%  Similarity=0.273  Sum_probs=77.9

Q ss_pred             ecCCCCCC-CCCCCcEEEeeeCCeEEEEecCCCC-CCCccceEEEEEEeecCCCce-------EEEeeecCCCCeEEecC
Q psy7040         318 AKNPFNQP-GKPGTPEIKDFDTDFVELAWTPPEQ-NGGSPIVGYIIEKKEKYSPIW-------EKCAQTEGDTPKGKVLD  388 (716)
Q Consensus       318 ~~~~~~~p-~~p~~~~~~~~~~~~i~l~W~~p~~-~~~~~i~~y~v~~~~~~~~~~-------~~~~~~~~~~~~~~i~~  388 (716)
                      +.+....| .+|.++.+...+.+++.|+|.+|.. ..++.|.+|+|+|+..+...+       ...........++.|.+
T Consensus         7 ~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   86 (125)
T 1uen_A            7 GHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPG   86 (125)
T ss_dssp             CCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEES
T ss_pred             EECCCCCCCCCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEecCCccEEEeCC
Confidence            34445566 6889999999999999999999742 234479999999987664332       12233456788999999


Q ss_pred             CCCCCeEEEEEEEEeCCCCCCCCCCCCceEe
Q psy7040         389 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       389 l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      |.+++.|.|+|+|+|..|.|.+|......+.
T Consensus        87 L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  117 (125)
T 1uen_A           87 LEPFSHYTLNVRVVNGKGEGPASPDRVFNTP  117 (125)
T ss_dssp             CCSSCEEEEEEEEEESSCEEEECCCEEEECC
T ss_pred             CCCCCEEEEEEEEecCCCCCCCCCCEEEECC
Confidence            9999999999999999999888765544443

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}

Probab=99.19  E-value=6e-11  Score=92.89  Aligned_cols=86  Identities=26%  Similarity=0.335  Sum_probs=67.6

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC-CcEE-EecccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWI-PVGKTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~-~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +.||..|++..++.+++.|+|++|..    ++.+|.|+|+..+. +.+. .......++++|.+|.|++.|.|+|+|.|.
T Consensus         2 p~~P~~l~~~~~~~~sv~lsW~pP~~----~i~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~A~n~   77 (100)
T 3b83_A            2 LQPPFNIKVTNITLTTAVVTWQPPIL----PIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNG   77 (100)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECCSS----CCSEEEEEEEESSCTTTCEEEEECTTEEEEEECSCCTTCEEEEEEEEEET
T ss_pred             CccCCccEEEEecCCEEEEEEcCCcc----cCCEEEEEEEECCCCCCceEEEECCcceEEEECCCCCCCEEEEEEEEEeC
Confidence            45667788888899999999999852    59999999986552 2232 223344589999999999999999999999


Q ss_pred             CccCCCccccce
Q psy7040         133 EGESEPLETFSS  144 (716)
Q Consensus       133 ~g~~~~s~~~~~  144 (716)
                      .|.|.++.....
T Consensus        78 ~g~s~p~~~~~~   89 (100)
T 3b83_A           78 QQYSPPVSTTFT   89 (100)
T ss_dssp             TEECCCEEEEEE
T ss_pred             CCCCCCEEEEEE
Confidence            999987765543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.19  E-value=1.2e-09  Score=99.91  Aligned_cols=171  Identities=19%  Similarity=0.230  Sum_probs=117.7

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC-CCeEEEEECCC-CCCCceeEEEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDS-KRGDSGIYTLAVK  502 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l-~~~~~~~y~~~a~  502 (716)
                      +|.+.. .+.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+........... +....|.|.++ ...|.|.|+|.|.
T Consensus         6 ~P~~~~-~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~   84 (212)
T 2yd6_A            6 PPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS   84 (212)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEE
T ss_pred             CCeEEe-CcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEE
Confidence            444442 34567899999999999999999999999999998876554444333 35678999999 4999999999999


Q ss_pred             cCCCceeeEEEEEEEE--------EEEEEeCCC---CCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec-------
Q psy7040         503 NSWGTDKGTAKVTVLG--------CSLKWNPPE---DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID-------  564 (716)
Q Consensus       503 n~~g~~~~s~~~~v~~--------v~l~W~~p~---~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~-------  564 (716)
                      |..|....+..+.+..        ..+.-.+..   ..+......|.+    .+.+.+.+.|++.+.......       
T Consensus        85 n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~----~g~p~p~v~W~~~g~~l~~~~~~~~~~~  160 (212)
T 2yd6_A           85 NNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAA----SGNPDPEITWFKDFLPVDTSNNNGRIKQ  160 (212)
T ss_dssp             ETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEE----ECSSCCEEEEEETTEEC------CCEEE
T ss_pred             cCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEe----cCCCCCeEEEEECCccccCcCCCceEEE
Confidence            9999877777777651        122211110   112222333433    333455699999876543221       


Q ss_pred             -cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccce
Q psy7040         565 -NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI  600 (716)
Q Consensus       565 -~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~  600 (716)
                       .......+.|.++...+.+.|+|.|.|..|....+.
T Consensus       161 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~  197 (212)
T 2yd6_A          161 LRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAP  197 (212)
T ss_dssp             EEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             EecCCeEEEEEcCCCcccCEEEEEEEECCCCcccccc
Confidence             011247899999999999999999999999654443

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.19  E-value=2.4e-10  Score=92.86  Aligned_cols=91  Identities=21%  Similarity=0.291  Sum_probs=73.8

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .+|..+.+..++.+++.|+|++|...+ ..+.+|+|+|+..+...|..+ ....+++.|.+|.+++.|.|+|+|.|..|.
T Consensus        19 ~~P~~l~~~~~~~~si~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~   96 (116)
T 1x5g_A           19 GPAPNLRAYAASPTSITVTWETPVSGN-GEIQNYKLYYMEKGTDKEQDV-DVSSHSYTINGLKKYTEYSFRVVAYNKHGP   96 (116)
T ss_dssp             CCCSSCEEEEEETTEEEEECCCCSCCS-SCCSEEEEEEEETTCCCCCCE-EECSSEEEECSCCTTCEEEEEEEEECSSCC
T ss_pred             cCCCccEEEecCCCEEEEEEeCCCCCC-CcccEEEEEEEECCCCccEEE-ecCCceEEEcCCCCCCEEEEEEEEEcCCCc
Confidence            456668888999999999999987544 459999999998776655322 233589999999999999999999999999


Q ss_pred             CCCccccceEEec
Q psy7040         136 SEPLETFSSIIAR  148 (716)
Q Consensus       136 ~~~s~~~~~~~~~  148 (716)
                      +.++......+..
T Consensus        97 g~~S~~~~~~T~~  109 (116)
T 1x5g_A           97 GVSTPDVAVRTLS  109 (116)
T ss_dssp             CCBCCCCCEECCC
T ss_pred             CCCCCCEEEECCC
Confidence            9888777666654

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.19  E-value=9.9e-11  Score=94.54  Aligned_cols=93  Identities=14%  Similarity=0.213  Sum_probs=70.9

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCC-CCCCccceEEEEEEcCCCC---cEE-EecccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKD-DGGEPLEGYLVEKYDPETG---VWI-PVGKTREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~-~~~~~i~~y~v~~~~~~~~---~~~-~~~~~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      ||..+.+..++.++|.|+|++|.. ..+..|.+|+|+|+..+..   .|. .......++++|.+|+|++.|.|+|+|.|
T Consensus        11 ~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   90 (114)
T 1x4y_A           11 GPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFN   90 (114)
T ss_dssp             CCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEEEC
T ss_pred             CCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCCcEeEEEcCCCCCCCEEEEEEEEEc
Confidence            444466778889999999999863 3445699999999866543   332 12223347899999999999999999999


Q ss_pred             cCccCCCccccceEEecC
Q psy7040         132 KEGESEPLETFSSIIARD  149 (716)
Q Consensus       132 ~~g~~~~s~~~~~~~~~~  149 (716)
                      ..|.+.++......+...
T Consensus        91 ~~G~g~~S~~v~~~T~~~  108 (114)
T 1x4y_A           91 EGGESEFSNVMICETKAR  108 (114)
T ss_dssp             TTCCCCCCCCEEEECCCC
T ss_pred             CCccCCCcCCEEEEeCCC
Confidence            999999988776666543

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=5.6e-11  Score=93.65  Aligned_cols=84  Identities=23%  Similarity=0.300  Sum_probs=68.8

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEec-ccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG-KTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      ++.||.+|.+.+++.+++.|+|++|.    ..|.+|+|.|+..++..+..+. ....+++.|.+|.|++.|.|+|.|.|.
T Consensus         7 p~~pP~~l~~~~vt~tsi~vsW~pp~----~~i~~Y~I~y~~~~~~~~~~~~v~~~~t~~~l~~L~p~T~Y~v~V~A~~~   82 (108)
T 2ee3_A            7 GLAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYP   82 (108)
T ss_dssp             CCCCSSCEEEESCCSSCEEEEESCCS----SCCSEEEEEEEETTTCCBCCEEEETTCCEEEECSCCSSCEEEEEEEEECT
T ss_pred             CCCCCceEEEEEccCCeEEEEeeCCC----CCccEEEEEEEeCCCCceeEEEcCCCcCEEEcCCCCCCCEEEEEEEEEeC
Confidence            56788999999999999999999874    3599999999876544332222 234589999999999999999999999


Q ss_pred             CccCCCccc
Q psy7040         133 EGESEPLET  141 (716)
Q Consensus       133 ~g~~~~s~~  141 (716)
                      .|.+.++..
T Consensus        83 ~g~s~p~~~   91 (108)
T 2ee3_A           83 GGGSSTLTG   91 (108)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcCCCccC
Confidence            999888765

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.18  E-value=1.5e-10  Score=90.84  Aligned_cols=91  Identities=14%  Similarity=0.233  Sum_probs=68.9

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCC-CCCCccceEEEEEEcCCCC---cEEEec-ccCCCeEEecCCCCCcEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKD-DGGEPLEGYLVEKYDPETG---VWIPVG-KTREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~-~~~~~i~~y~v~~~~~~~~---~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      ..+|..+.+...+.++|.|+|++|.. ..++.|.+|+|.|+..+..   .|.... ....+++.|.+|+|++.|.|+|+|
T Consensus         5 ~~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~v~V~A   84 (102)
T 3n1f_C            5 ITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKMQC   84 (102)
T ss_dssp             CSCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEEEETTCSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEEEEcCCceEEECCCCCCCCEEEEEEEE
Confidence            34555677788999999999998863 2334699999999876543   554332 233578999999999999999999


Q ss_pred             EecCccCCCccccceE
Q psy7040         130 LNKEGESEPLETFSSI  145 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~  145 (716)
                      .|..|.+..|......
T Consensus        85 ~n~~G~G~~S~~~~~~  100 (102)
T 3n1f_C           85 FNEGGESEFSNVMICE  100 (102)
T ss_dssp             EETTEECCCCCCEEEE
T ss_pred             ECCCcCCCCCCCEEee
Confidence            9999999988765443

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.18  E-value=6.4e-10  Score=100.14  Aligned_cols=160  Identities=13%  Similarity=0.042  Sum_probs=105.4

Q ss_pred             cEEEecCCeEEEEEE---EeccCCCeEEEEeCCeEec-----------------cCCcEEEEeCCCeEEEEECCCCCCCc
Q psy7040         435 DIKVRAGSNFEFDIN---VIGEPIPTKEWLCNDITII-----------------SKDRFKIVNDDKSTKLKVFDSKRGDS  494 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~---v~~~p~~~~~W~~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~l~~~~~  494 (716)
                      ++.+..|+.+.|.|.   +.+.|.+.+.|++++....                 ....+.+....+...|.|.++...|.
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            467889999999994   6788999999999763211                 12234445556778999999999999


Q ss_pred             eeEEEEEEcCCCceeeEEEEEEEE---EEEEEeC-CCCCCCCceeeEEEEEEecCCCceeeeEEEccceeee------ec
Q psy7040         495 GIYTLAVKNSWGTDKGTAKVTVLG---CSLKWNP-PEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVT------ID  564 (716)
Q Consensus       495 ~~y~~~a~n~~g~~~~s~~~~v~~---v~l~W~~-p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~------~~  564 (716)
                      |.|+|.|.|..|.......+.+..   +...-.. ....+......|.+...    +.|.+.|++.+.....      ..
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~----P~P~v~W~~~~~~~~~~~~~~~r~  157 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAF----PHPHVQWLMPEGVEPAPTAANGGV  157 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEE----SCCEEEECCC------------CC
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCC----CCCEEEEEECCeeecCcccccceE
Confidence            999999999999888888887772   1111111 11223333445555544    3445999765432210      00


Q ss_pred             c--cc-ceeEEEEcCCCCCCeEEEEEEEEcCCCCCcc
Q psy7040         565 N--VD-YFTKITIRPLQRSDTAQYTVTATNSQGKDQV  598 (716)
Q Consensus       565 ~--~~-~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~  598 (716)
                      .  .+ ....+.+.++.+.+.+.|+|.|.|..|....
T Consensus       158 ~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          158 MKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             EECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             EEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            1  11 1133455789999999999999999997543

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}

Probab=99.18  E-value=2.3e-10  Score=88.95  Aligned_cols=85  Identities=14%  Similarity=0.123  Sum_probs=67.3

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc-EEE-ecccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV-WIP-VGKTREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~-~~~~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      .+.||.+|++.+++.+++.|+|++|.    ..+.+|+|.|+..++.. +.. ......++++|.+|.|++.|.|+|+|.+
T Consensus         4 ~~~~P~~l~v~~~t~~Si~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~v~V~A~~   79 (97)
T 3qht_C            4 VSSVPTKLEVVAATPTSLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVYAYY   79 (97)
T ss_dssp             -CCSSSSCEEEEEETTEEEEECCCCC----SSCCEEEEEEEESSSCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCCCCceEEEecCCCEEEEEEeCCC----CCCCEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEEe
Confidence            35788889999999999999999874    35999999998766542 222 2233458999999999999999999999


Q ss_pred             cCccCCCcccc
Q psy7040         132 KEGESEPLETF  142 (716)
Q Consensus       132 ~~g~~~~s~~~  142 (716)
                      ..|.+..+..-
T Consensus        80 ~~G~gp~ss~p   90 (97)
T 3qht_C           80 SYYDLYYSYSP   90 (97)
T ss_dssp             EETTEEEECSC
T ss_pred             CCccCCCCCCC
Confidence            99988655433

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} PDB: 3va2_C

Probab=99.18  E-value=2.9e-08  Score=95.28  Aligned_cols=171  Identities=12%  Similarity=0.058  Sum_probs=108.4

Q ss_pred             CCCCCCCCeEEeEEeCCeEEEEEECCCCCCC-CccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEE
Q psy7040         222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGG-QPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA  300 (716)
Q Consensus       222 ~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a  300 (716)
                      ...+|.+ +.+...+...+.|+|++|....+ .--..|.+.++..+...|.....     .......|..+  |.++|++
T Consensus        11 ~~~pP~n-l~i~~~~~~~~~l~W~~~p~~~~~~~~l~Y~v~~~~~~~~~w~~~~t-----~~~~~~~L~~~--~~~rVrt   82 (317)
T 3qt2_A           11 SLLPPVN-FTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRIT-----ESKAVTILHMG--FSASVRT   82 (317)
T ss_dssp             CCCCCEE-EEEEEEETTEEEEEEECCTTSSCSSSCCEEEEEEEESSCEEEEESSS-----EEEEECCCTTC--EEEEEEE
T ss_pred             ccCCCcc-eEEEECCCceEEEEECCCCccccCcCcEEEEEEECCCCCcccEeecc-----ccccccccCCC--eEEEEEE
Confidence            3567887 88888888999999998443322 23468999998887888886543     33346667655  8899998


Q ss_pred             EcCCCCCC-CCcccceEEecCCCCCCCCCCCcEEEeee-----------CCeEEEEecCCCCCCCccceEEEEEEeecCC
Q psy7040         301 VNKQGKSE-PLTTTASIEAKNPFNQPGKPGTPEIKDFD-----------TDFVELAWTPPEQNGGSPIVGYIIEKKEKYS  368 (716)
Q Consensus       301 ~n~~g~~~-~~~~~~~~~~~~~~~~p~~p~~~~~~~~~-----------~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~  368 (716)
                      ....|.+. +|..+....-..+..+|..|.++.+....           ...++++|.+-.. . ..-+.|.+.|+..+ 
T Consensus        83 ~~~~~~s~~~S~w~~~~~~~~~G~p~~~p~nlsC~~~~~~~~~~~~~~~~~~l~CtW~pG~~-~-~~~t~Y~L~y~~~~-  159 (317)
T 3qt2_A           83 ILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGTD-A-PEDTQYFLYYRYGS-  159 (317)
T ss_dssp             EEECSSCEEECCCEEEEECCCSCBGGGSCEEEEEEEEEEECSCSSSCCEEEEEEEEEECCTT-C-CTTCEEEEEEEETT-
T ss_pred             EECCCCCccccccccccccCCCCCCCCcceeeEEEEccccccccccccccceEEEEeeCCCC-C-CCCeeEEEEEEeCC-
Confidence            87765433 45554334333333345678899988666           4689999998322 1 13467999988654 


Q ss_pred             CceEEEee--ecC--CCCeEEecCCC----CCCeEEEEEEEEeC
Q psy7040         369 PIWEKCAQ--TEG--DTPKGKVLDLI----EGNQYEFRVLAVNK  404 (716)
Q Consensus       369 ~~~~~~~~--~~~--~~~~~~i~~l~----~~~~Y~~~v~a~n~  404 (716)
                       .+..+..  ...  ....+.+....    ....|.|.|.+.+.
T Consensus       160 -~~~eC~~y~~~~~~~~~~C~f~~~~~~~~~~~~~~i~V~gss~  202 (317)
T 3qt2_A          160 -WTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSK  202 (317)
T ss_dssp             -EEEECCCEEECTTSCEEEEEESSCSCCTTCCSEEEEEEEEECT
T ss_pred             -CCeeCCccccCCCcceeEEEeCCccccccCcEEEEEEEEcCCC
Confidence             2444421  122  12356666542    24567788776554

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.17  E-value=8.5e-11  Score=122.05  Aligned_cols=318  Identities=13%  Similarity=0.038  Sum_probs=148.2

Q ss_pred             ceEEEEec--CCccEEEEeccccCcceEEEEEEEeCCC------------CceeEEEEEEecCC-CCCCCCeEEe-----
Q psy7040         174 MVRKVQHL--DYNTKLGVRMAQRADAGFYTVTAENING------------KDSVEVEVIVLDKP-SPPGGPLKVS-----  233 (716)
Q Consensus       174 ~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n~~g------------~~~~~~~~~v~~~p-~~p~~~~~~~-----  233 (716)
                      +|+.+...  +....|.|.+++..|+|.|+|.|.|..|            .....+.|.|...+ .+|.  +...     
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~--i~~~~~~~~  143 (457)
T 1hzh_H           66 DRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPS--VFPLAPSSK  143 (457)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCE--EEEECCCSC
T ss_pred             CceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCe--EEecCcccc
Confidence            35555432  3457899999999999999999999876            12345567776532 2222  1111     


Q ss_pred             EEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCC----CeEEccccCc---ccceEEEcCCCCCCeEEEEEEEEcCCCC
Q psy7040         234 NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG----RWTPAGETEG---PVTGLEVEGLIPNHKYKFRVRAVNKQGK  306 (716)
Q Consensus       234 ~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~----~~~~~~~~~~---~~~~~~i~~L~p~~~y~~~v~a~n~~g~  306 (716)
                      ...+..++|.|.....   .|. ...+.|...+..    .........+   ....+.|.++...+ +.|.|.|.|..+.
T Consensus       144 ~~~g~~v~L~C~~~g~---~P~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~  218 (457)
T 1hzh_H          144 STSGGTAALGCLVKDY---FPE-PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  218 (457)
T ss_dssp             CCTTCCEEEEEEEESB---BSC-CCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGT
T ss_pred             ccCCCcEEEEEEEeEE---eCC-CeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCC
Confidence            2356778888885321   111 122333222211    0000000101   12368888988888 9999999996654


Q ss_pred             CCCCcccceEEecCC---C---CC--CC--CCCCcEEE-------eeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC
Q psy7040         307 SEPLTTTASIEAKNP---F---NQ--PG--KPGTPEIK-------DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP  369 (716)
Q Consensus       307 ~~~~~~~~~~~~~~~---~---~~--p~--~p~~~~~~-------~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~  369 (716)
                      ......   +.....   .   ..  +.  .+..+.+.       ...+..+.|.|....... .+ ....|.|...+..
T Consensus       219 ~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p-~p-~~~~i~W~k~~~~  293 (457)
T 1hzh_H          219 TKVDKK---AEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSH-ED-PEVKFNWYVDGVE  293 (457)
T ss_dssp             EEEEEE---CCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCT-TC-CCCEEEEEETTEE
T ss_pred             cceeEE---ecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccC-CC-CceEEEEEeCCcc
Confidence            211000   000000   0   00  00  00011111       011334555554311100 00 0011222222100


Q ss_pred             ---ceEEEeeecCCCCeEEecC---CCCCC---eEEEEEEEEeCCCCCCCCCCCCceEe-ecCCCCCcccccccccEEEe
Q psy7040         370 ---IWEKCAQTEGDTPKGKVLD---LIEGN---QYEFRVLAVNKGGPGEPSDPTAPHIA-RAKKVSPYINRDQLSDIKVR  439 (716)
Q Consensus       370 ---~~~~~~~~~~~~~~~~i~~---l~~~~---~Y~~~v~a~n~~g~~~~s~~~~~~~~-~~~~~~P~~~~~~~~~~~~~  439 (716)
                         ...... .......+.+..   +...+   ...|+|.|.|..+......   .+.. .....+|.+.........+.
T Consensus       294 ~~~~~~~~~-~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~---~v~~~~~~~~~P~v~~~~~~~~~~~  369 (457)
T 1hzh_H          294 VHNAKTKPR-EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEK---TISKAKGQPREPQVYTLPPSRDELT  369 (457)
T ss_dssp             ECCCEEEEE-EECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEE---EECCCCCCCBCCEEEEECCCGGGGG
T ss_pred             ccccccccc-eecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceE---EEEcccCCCCCCeEEEECCCccccC
Confidence               000000 001112232221   22323   5678899987654321110   0100 12234555442222222233


Q ss_pred             cCCeEEEEEEEeccCCC--eEEEEeCCeEeccCCcEEEEeCCCe-----EEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         440 AGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKS-----TKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~-----~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      .|. +.|.|.+.+.+++  .+.|++++..+.......+....+.     ..|.+......+.|.|+|.|.|.....
T Consensus       370 ~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  444 (457)
T 1hzh_H          370 KNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  444 (457)
T ss_dssp             SSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             CCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCCC
Confidence            455 9999999987554  8999999988753221111111111     234454444467899999999987544

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.17  E-value=1.2e-10  Score=93.08  Aligned_cols=85  Identities=18%  Similarity=0.218  Sum_probs=68.8

Q ss_pred             ceEEE--EeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCC
Q psy7040          61 LEVSN--IHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP  138 (716)
Q Consensus        61 l~~~~--~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~  138 (716)
                      +++..  .+.+++.|+|++|. +.+..|.+|+|+|+..+...|..... ..+.+.|.+|.+++.|.|+|+|.|..|.+.+
T Consensus        14 l~~~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~   91 (108)
T 2dm4_A           14 LQLSLPREAEGVIVGHWAPPI-HTHGLIREYIVEYSRSGSKMWASQRA-ASNFTEIKNLLVNTLYTVRVAAVTSRGIGNW   91 (108)
T ss_dssp             EEEECCTTCSSCEEEEEECCS-CCSSCEEEEEEEEEETTCSCCEEEEE-SSSEEEECSCCSSCEEEEEEEEEESSCEEEE
T ss_pred             eEEEEeccCCCEEEEEEcCCC-CCCCcEEEEEEEEEECCCCCeEEecC-CccEEEeCCCCCCCEEEEEEEEECCCceeCC
Confidence            44344  47889999999997 34456999999999888777765533 3579999999999999999999999999988


Q ss_pred             ccccceEEe
Q psy7040         139 LETFSSIIA  147 (716)
Q Consensus       139 s~~~~~~~~  147 (716)
                      |......+.
T Consensus        92 S~~~~~~T~  100 (108)
T 2dm4_A           92 SDSKSITTI  100 (108)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            877666554

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}

Probab=99.17  E-value=1.9e-10  Score=89.49  Aligned_cols=86  Identities=16%  Similarity=0.094  Sum_probs=70.5

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      ..+.+|.++.+...+.+++.|+|.+|.    +.+.+|+|.|...+...+...........++.|.+|.|++.|.|+|+|.
T Consensus         3 t~~~~P~~l~v~~~t~~Si~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~v~V~A~   78 (97)
T 3qht_C            3 SVSSVPTKLEVVAATPTSLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVYAY   78 (97)
T ss_dssp             --CCSSSSCEEEEEETTEEEEECCCCC----SSCCEEEEEEEESSSCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCCceEEEecCCCEEEEEEeCCC----CCCCEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            357889999999999999999999863    3689999999887644333444456778999999999999999999999


Q ss_pred             eCCCCCCCCC
Q psy7040         403 NKGGPGEPSD  412 (716)
Q Consensus       403 n~~g~~~~s~  412 (716)
                      +..|.|+.+.
T Consensus        79 ~~~G~gp~ss   88 (97)
T 3qht_C           79 YSYYDLYYSY   88 (97)
T ss_dssp             EEETTEEEEC
T ss_pred             eCCccCCCCC
Confidence            9999886543

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens}

Probab=99.17  E-value=1.7e-10  Score=97.74  Aligned_cols=112  Identities=21%  Similarity=0.237  Sum_probs=88.2

Q ss_pred             cceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEe-cCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceE
Q psy7040         280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEA-KNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVG  358 (716)
Q Consensus       280 ~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~-~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~  358 (716)
                      .+++.+.+++ |+.|.+..+...          . .+.. ..+...|.+|.++++..++.+++.|+|++|...+|  |.+
T Consensus       117 vts~~vgdg~-g~~~~~~~~~k~----------v-~i~~~tq~ev~p~Pp~NL~At~VT~tSVtLsW~aP~~~~G--I~g  182 (238)
T 2w1n_A          117 VTNSSVGDGE-GLVHEIAGTEKT----------V-NIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEG  182 (238)
T ss_dssp             EEEEEEECTT-SCEEECBCEEEE----------E-EEECCCCCCCCCCCCEEEEEEEECSSCEEEEEECCSCCTT--EEE
T ss_pred             eeeEEEecCC-CcEEEeecccee----------e-eeccCCCCcCccCCCCceEEEEccCCeEEEEecCCCCCCC--cee
Confidence            4788888898 999988776322          1 1111 12345679999999999999999999999887666  999


Q ss_pred             EEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCC
Q psy7040         359 YIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  411 (716)
Q Consensus       359 y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s  411 (716)
                      |+|++..      ......+...++|++.+|++++.|.|+|.|.+..|.+...
T Consensus       183 Y~ly~~g------~~v~~v~~~~tsyt~~gLk~~TeYsF~V~A~d~~G~~Ss~  229 (238)
T 2w1n_A          183 YILYKDG------KKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSK  229 (238)
T ss_dssp             EEEEETT------EEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCBCCC
T ss_pred             EEEEeCC------ceeEEeeccceEEEecCCCCCCEEEEEEEEEeCCCCcccc
Confidence            9999854      2334466778999999999999999999999999987544

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.17  E-value=2e-10  Score=92.01  Aligned_cols=98  Identities=13%  Similarity=0.071  Sum_probs=75.2

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCc---cceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGS---PIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV  399 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~---~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v  399 (716)
                      .+|.+|.++++...+.++|.|+|.+|...++.   .+.+|.|.|+......+. .........++.|.+|+|++.|.|+|
T Consensus         7 ~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~~~~~~~~Y~v~y~~~~~~~~~-~~~~~~~~~~~~i~gL~P~T~Y~f~V   85 (113)
T 1x5j_A            7 GPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK-YKNANATTLSYLVTGLKPNTLYEFSV   85 (113)
T ss_dssp             CCCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCC-CEECCBCSSEEEEESCCTTCEECCEE
T ss_pred             CCCCCCcceEEEEecCCEEEEEecCCCCccccccCcCceEEEEEEECCCCCeE-EEEEecCcCEEEeCCCCCCcEEEEEE
Confidence            56788999999999999999999987654431   134999999874322221 22234567899999999999999999


Q ss_pred             EEEeCCCCCCCCCCCCceEeec
Q psy7040         400 LAVNKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       400 ~a~n~~g~~~~s~~~~~~~~~~  421 (716)
                      +|.|..|.|.+|......+...
T Consensus        86 ~A~~~~G~g~~S~~v~~~T~~~  107 (113)
T 1x5j_A           86 MVTKGRRSSTWSMTAHGTTFEL  107 (113)
T ss_dssp             EEECSSCBCCCCCCCCEECCCS
T ss_pred             EEecCCccCCCcccEEeeccCC
Confidence            9999999999988776655443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.17  E-value=1.7e-10  Score=106.85  Aligned_cols=118  Identities=12%  Similarity=0.028  Sum_probs=74.4

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCcc-ceeeccceeEEEEEEeeEEEEeeeeccCcee----
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG-PIQWLLTLTDVTWEISNYLQELHSSLMPISL----  644 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~-~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----  644 (716)
                      ..+.|.+++..+.+.|+|.|.|..|.......+.++.++..+.. .....+..+.              +.|.+.|    
T Consensus        83 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~--------------l~c~~~g~~P~  148 (226)
T 4f80_A           83 AALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIH--------------LECRSTGWYPQ  148 (226)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEE--------------EEEEEEEEBSC
T ss_pred             EEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCcee--------------eEEEeccCCCC
Confidence            78999999999999999999998776544433333333322221 1112233333              4555554    


Q ss_pred             -eEEEEeCCeEe-eec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         645 -ESQYLMNDKRV-TID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       645 -~~~W~~~~~~~-~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                       .+.|++++..+ ...       ..+....+.+..+...|.|+|+|.|.|..|..+.+..|.|.+|
T Consensus       149 p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          149 PQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             CEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             CEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence             89999965433 222       1111133445567889999999999999999999999998764

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2e-10  Score=93.64  Aligned_cols=96  Identities=13%  Similarity=0.127  Sum_probs=72.5

Q ss_pred             CCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCc---cceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         322 FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGS---PIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       322 ~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~---~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      ..+|.+|.++++...+.++|.|+|.+|...++.   .+.+|+|+|+..+...+. .........+++|.+|+|++.|.|+
T Consensus        16 ~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~i~~~~~~Y~v~y~~~~~~~~~-~~~~~~~~~~~~v~gL~P~T~Y~f~   94 (123)
T 2edd_A           16 STPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAK-YKSEDTTSLSYTATGLKPNTMYEFS   94 (123)
T ss_dssp             CCSSCCCEEEEEEEEETTEEEEEEECSSSCSSCCCSCCCCEEEEEEETTCTTCC-CCCEEESSSEEEEESCCTTCEEEEE
T ss_pred             CCCCCCCcceEEEEcCCCeEEEEecCCCCCcccccCcCceEEEEEEECCCCCcc-EEEEeCCceEEEecCCCCCCEEEEE
Confidence            356789999999999999999999987654431   234999999876422211 1122345789999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceE
Q psy7040         399 VLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~~  418 (716)
                      |+|.|..|.|.+|......+
T Consensus        95 V~A~n~~g~g~~S~~v~~~T  114 (123)
T 2edd_A           95 VMVTKNRRSSTWSMTAHATT  114 (123)
T ss_dssp             EEECCSSSCCCCCCCEEEEC
T ss_pred             EEEeCCCcccCCCCCEEEEc
Confidence            99999999998887654443

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.16  E-value=4e-10  Score=103.63  Aligned_cols=177  Identities=12%  Similarity=0.139  Sum_probs=110.8

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +..+.+..|+.+.|.|.+.+.|.+.+.|++++..+...         ....|.|.++...|.|.|+|.|.|..|...   
T Consensus        25 p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~---   92 (218)
T 3k0w_A           25 PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG---------NTSELIFNAVHVKDAGFYVCRVNNNFTFEF---   92 (218)
T ss_dssp             CCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC---------CSSEEEETTCCGGGCEEEEEEEECTTCCEE---
T ss_pred             CCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC---------CCCEEEEccCChhhCeEeEEEEEcCCCCce---
Confidence            34678999999999999999999999999999887543         245799999999999999999987654210   


Q ss_pred             EEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcC
Q psy7040         513 KVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS  592 (716)
Q Consensus       513 ~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~  592 (716)
                                           -..                                 ..+.+......  +       ..
T Consensus        93 ---------------------s~~---------------------------------~~l~V~~~~~~--~-------~~  109 (218)
T 3k0w_A           93 ---------------------SQW---------------------------------SQLDVCDIPES--F-------QR  109 (218)
T ss_dssp             ---------------------CCC---------------------------------EEEEEECCCGG--G-------CT
T ss_pred             ---------------------eeE---------------------------------EEEEEEccCcc--c-------cc
Confidence                                 000                                 11111111000  0       00


Q ss_pred             CCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeecccceeeEEEE
Q psy7040         593 QGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTIDNVDYFTKITI  668 (716)
Q Consensus       593 ~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~~~~~~~~~~i  668 (716)
                      .-.+.......+...|..   .....+..+.              |.|.+.|    .+.|++++..+...   ....|.|
T Consensus       110 ~~~~~~~~~p~~~~~~~~---~~v~~G~~v~--------------L~C~~~g~p~~~v~W~~~~~~~~~~---~~~~L~i  169 (218)
T 3k0w_A          110 SVDGVSESKLQICVEPTS---QKLMPGSTLV--------------LQCVAVGSPIPHYQWFKNELPLTHE---TKKLYMV  169 (218)
T ss_dssp             TCCSBCCSSCEEEECCCC---EEECTTCCEE--------------EECEEEBSSCCEEEEEETTEECTTC---CSSEEEE
T ss_pred             ccccccCCCceEEECCCc---eeecCCCcEE--------------EEEEecccCCCeEEEEECCEECCCC---CCCEEEE
Confidence            000000000000000100   1111233333              5666655    89999999987654   3468999


Q ss_pred             ccCCCCCcEEEEEEEEcCCCC-ceeeEEEEEecCCCC
Q psy7040         669 RPLQRSDTAQYTVTATNSQGK-DQVFIEVVVTDKPSA  704 (716)
Q Consensus       669 ~~l~~~~~y~y~~~a~n~~G~-~~~s~~l~v~~~p~~  704 (716)
                      .++...|.|.|+|.|.|..|. .+....|.|...+..
T Consensus       170 ~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~~  206 (218)
T 3k0w_A          170 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL  206 (218)
T ss_dssp             SSCCGGGCEEEEEEEECSSCEEECCCEEEEECC----
T ss_pred             eecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCccC
Confidence            999999999999999999888 466778888775443

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=3.3e-10  Score=91.68  Aligned_cols=91  Identities=16%  Similarity=0.259  Sum_probs=70.3

Q ss_pred             CCCCceEEEE--eCCeEEEEecCCCCCCCCccceEEEEEEcCCC---CcEEEec-ccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          57 PEGPLEVSNI--HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET---GVWIPVG-KTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        57 p~~~l~~~~~--~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~---~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      ||.++.+...  +.+++.|+|++|...+| .|.+|.|+|+....   ..|.... ....+++.|.+|.+++.|.|+|+|.
T Consensus        11 ~P~~l~~~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   89 (114)
T 2ede_A           11 APKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQAR   89 (114)
T ss_dssp             CCEEEEEEECSSCSSCEEEEEECCSSCSS-CCSEEEEEEESCSSSCTTTSEEEEEETTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             CCcceEEEEccCCCCEEEEEECCCCCCCC-ceeEEEEEEEeCCCCCccceEEEEECCCceEEEEcCCCCCCEEEEEEEEE
Confidence            4444677777  77899999999975444 69999999987543   2444333 3445899999999999999999999


Q ss_pred             ecCccCCCccccceEEec
Q psy7040         131 NKEGESEPLETFSSIIAR  148 (716)
Q Consensus       131 ~~~g~~~~s~~~~~~~~~  148 (716)
                      |..|.+.++......+..
T Consensus        90 n~~G~g~~S~~~~~~T~~  107 (114)
T 2ede_A           90 NSKGVGPLSDPILFRTLK  107 (114)
T ss_dssp             CSSCBCCCCCCEEEECCC
T ss_pred             eCCcCcCCcccEEEEecC
Confidence            999999988877665543

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.16  E-value=2.3e-11  Score=125.37  Aligned_cols=310  Identities=11%  Similarity=-0.018  Sum_probs=153.3

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecC-CCCCCCCeEEe-----EEeCCeEEEEEECCCCCCCCccc
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK-PSPPGGPLKVS-----NVHAEGVTLDWKVPDDDGGQPIE  256 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~-p~~p~~~~~~~-----~~~~~~~~l~W~~p~~~~~~~~~  256 (716)
                      ....|.|.+++..|+|.|+|.|.|..+.....+.|.|... +.+|.  +...     ...+..++|.|.....   .|. 
T Consensus        76 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~--i~~~~~~~~~~~G~~v~L~C~~~g~---~P~-  149 (434)
T 1igy_B           76 NTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPS--VYPLAPGSAAQTNSMVTLGCLVKGY---FPE-  149 (434)
T ss_dssp             CBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCC--EEEECCCCCCCCTTEEEEEEEEEEE---BSS-
T ss_pred             CEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCe--EEEcCCccccCCCCcEEEEEEEeee---cCC-
Confidence            4568999999999999999999997655555667777642 23332  2211     1357788999985211   011 


Q ss_pred             eEEEEEEeCCCCC-eEEccc--cCc---ccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecC------CCCC
Q psy7040         257 KYVVDKMDEATGR-WTPAGE--TEG---PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKN------PFNQ  324 (716)
Q Consensus       257 ~y~v~~~~~~~~~-~~~~~~--~~~---~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~------~~~~  324 (716)
                      ...+.|...+... -.....  ..+   ....+.|.+....+ +.|.|.|.|..|........   ....      ....
T Consensus       150 p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~---~~~~~~~~v~~~~~  225 (434)
T 1igy_B          150 PVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKI---VPRDCGCKPCICTV  225 (434)
T ss_dssp             CCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEEC---CCCCCCCCCCCCCC
T ss_pred             CeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeec---cCCCCCCccccCCC
Confidence            1123332222110 000000  000   12457888888777 99999999987753211110   0000      0000


Q ss_pred             CCCCCCcEEE-------eeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC-----ceEEEeee---cCCCCeEEecCC
Q psy7040         325 PGKPGTPEIK-------DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP-----IWEKCAQT---EGDTPKGKVLDL  389 (716)
Q Consensus       325 p~~p~~~~~~-------~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~-----~~~~~~~~---~~~~~~~~i~~l  389 (716)
                      +..| .+.+.       ...+..+.|.|........ + ....|.|...+..     ........   ......+.|..+
T Consensus       226 ~~~p-~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~-P-~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  302 (434)
T 1igy_B          226 PEVS-SVFIFPPKPKDTLLITVTPKVTCVVVDISKD-D-PEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQ  302 (434)
T ss_dssp             SSSC-CEEEECCCHHHHHSTTSCCEEEEEECCCCSS-C-CCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHH
T ss_pred             CcCc-EEEEeCCChHHhcccCCCcEEEEEEeccccC-C-CCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHH
Confidence            0000 01111       1123445555544211000 0 0001112111100     00000000   011235677777


Q ss_pred             CCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCC--CeEEEEeCCeEe
Q psy7040         390 IEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI--PTKEWLCNDITI  467 (716)
Q Consensus       390 ~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~--~~~~W~~~~~~~  467 (716)
                      ...+...|+|.|.|..|..........  ......+|.+........ ...+..+.|.|.+.+.++  +.+.|++++..+
T Consensus       303 ~~~d~G~Y~C~a~n~~~~~~~~~~v~~--~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l  379 (434)
T 1igy_B          303 DWLNGKEFKCRVNSAAFPAPIEKTISK--TKGKPRAPQVYTIPPPKE-QMAKDKVSLTCMITDFFPEDITVEWQSDGQAP  379 (434)
T ss_dssp             HHHHTCCCBCCBCCSSCSSCCCCCCCC--CCSCCBCCCCEEECCCSS-SSSSSEEEEEEEEEEEBCSCEEEEEEETTSCC
T ss_pred             HccCCCcEEEEEECCCCCCceeEEEec--cCCCCcCCEEEEECCCHH-HhcCCcEEEEEEEEeeECCCeEEEEEECCEec
Confidence            666677899999998886532221111  012233555432211111 224667999999988543  389999999877


Q ss_pred             ccCCcEEE--EeCCC---eEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         468 ISKDRFKI--VNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       468 ~~~~~~~~--~~~~~---~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      ........  ..++.   ...|.|.....++.|.|+|.|.|.....
T Consensus       380 ~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  425 (434)
T 1igy_B          380 ENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHN  425 (434)
T ss_dssp             SCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSGG
T ss_pred             CCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCCC
Confidence            43211111  11111   1245666555567899999999987543

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2e-10  Score=92.94  Aligned_cols=94  Identities=26%  Similarity=0.380  Sum_probs=74.8

Q ss_pred             CCCCCCCCcEEEee--eCCeEEEEecCCCCCCCccceEEEEEEeecCC---CceEEEeeecCCCCeEEecCCCCCCeEEE
Q psy7040         323 NQPGKPGTPEIKDF--DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS---PIWEKCAQTEGDTPKGKVLDLIEGNQYEF  397 (716)
Q Consensus       323 ~~p~~p~~~~~~~~--~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~  397 (716)
                      .+|.+|.++.+...  +.+++.|+|.+|...++ .|.+|.|+|+....   ..|... .......++.|.+|.+++.|.|
T Consensus         7 ~P~~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~   84 (114)
T 2ede_A            7 GPTSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIME-TISGDRLTHQIMDLNLDTMYYF   84 (114)
T ss_dssp             CCCSCCEEEEEEECSSCSSCEEEEEECCSSCSS-CCSEEEEEEESCSSSCTTTSEEE-EEETTCCEEEECSCCSSCEEEE
T ss_pred             CCCCCCcceEEEEccCCCCEEEEEECCCCCCCC-ceeEEEEEEEeCCCCCccceEEE-EECCCceEEEEcCCCCCCEEEE
Confidence            34578999999887  77999999999865544 79999999987442   234433 3456788999999999999999


Q ss_pred             EEEEEeCCCCCCCCCCCCceE
Q psy7040         398 RVLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       398 ~v~a~n~~g~~~~s~~~~~~~  418 (716)
                      +|+|.|..|.|.+|......+
T Consensus        85 ~V~A~n~~G~g~~S~~~~~~T  105 (114)
T 2ede_A           85 RIQARNSKGVGPLSDPILFRT  105 (114)
T ss_dssp             EEEEECSSCBCCCCCCEEEEC
T ss_pred             EEEEEeCCcCcCCcccEEEEe
Confidence            999999999998887655443

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.15  E-value=1.5e-09  Score=97.78  Aligned_cols=166  Identities=13%  Similarity=0.105  Sum_probs=113.2

Q ss_pred             cccEEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEeccCC--cEEEEeCCC-------eEEEEECCCCCCCceeEEEEEE
Q psy7040         433 LSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKD--RFKIVNDDK-------STKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~-------~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      +..+.+..|+.+.|.|.+. +.|.+.+.|++++..+....  ++.+.....       ...|.|.++...|.|.|+|.|.
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   88 (195)
T 2c5d_C            9 PGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF   88 (195)
T ss_dssp             CCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEE
T ss_pred             hhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEE
Confidence            4567899999999999999 99999999999999887653  344444433       5689999999999999999999


Q ss_pred             cCCCceeeE-EEEEEE-EEEEEEeCC---CCCCCCceeeEEEEEEecCCCce-eeeEEEccceeeeeccccceeEEEEcC
Q psy7040         503 NSWGTDKGT-AKVTVL-GCSLKWNPP---EDDGGAPIEYYMVEKMETDTGKV-LIKWIRTNDKRVTIDNVDYFTKITIRP  576 (716)
Q Consensus       503 n~~g~~~~s-~~~~v~-~v~l~W~~p---~~~~~~~i~~y~v~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~i~~  576 (716)
                      |..|..... ..+.+. ...+.-.+.   ...+......|.+    .+.+.+ .+.|++.+..............+.|.+
T Consensus        89 ~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~----~g~p~p~~v~W~~~~~~~~~~~~~~~~~~L~i~~  164 (195)
T 2c5d_C           89 LGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQA----QGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPG  164 (195)
T ss_dssp             ETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEE----ECSSCCCEEEEEESSCBSSSSTTSSCCEEEEECC
T ss_pred             eCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeEC----CCCCCCCEEEEEECCEeccCCCCcCCCCeEEEcc
Confidence            987764332 555554 111111111   0112222333433    333445 599999877654332223457899999


Q ss_pred             CCCCCeEEEEEEEEcCCCCCc-cceeeec
Q psy7040         577 LQRSDTAQYTVTATNSQGKDQ-VFIEVVV  604 (716)
Q Consensus       577 L~~~~~y~~~v~a~n~~G~~~-~s~~~~v  604 (716)
                      +.  +.+.|+|.|.|..|... ....+.|
T Consensus       165 ~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          165 LN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             CS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            88  57999999999998664 4555545

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}

Probab=99.15  E-value=1.5e-10  Score=90.04  Aligned_cols=83  Identities=28%  Similarity=0.522  Sum_probs=66.5

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC-CcEEEe-cccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWIPV-GKTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      ++||..|++.+++.+++.|+|++|.    .++.+|.|+|+..+. +.+... .....++++|.+|.|++.|.|+|+|.|.
T Consensus         2 lp~P~~l~v~~~t~~Sv~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~l~gL~P~t~Y~~~V~A~~~   77 (98)
T 3tes_A            2 LPAPKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVKG   77 (98)
T ss_dssp             BCCCEEEEEESCCSSCEEEEEECCT----TSCSEEEEEEEETTBCSCCEEEEEETTCSEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCceEEEecCCCeEEEEecCCc----CccceEEEEEEECCCCCceEEEEcCCCcCEEEECCCCCCCEEEEEEEEEeC
Confidence            4677789999999999999999885    259999999987653 333322 2334589999999999999999999999


Q ss_pred             CccCCCccc
Q psy7040         133 EGESEPLET  141 (716)
Q Consensus       133 ~g~~~~s~~  141 (716)
                      .|.|.+...
T Consensus        78 ~g~S~p~~~   86 (98)
T 3tes_A           78 GHRSNPLSA   86 (98)
T ss_dssp             TEEBCCEEE
T ss_pred             CcccCCEEE
Confidence            998876543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.14  E-value=7e-11  Score=105.52  Aligned_cols=113  Identities=14%  Similarity=0.120  Sum_probs=82.3

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCcee----e
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----E  645 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~  645 (716)
                      ..+.|.+++..+.+.|+|.|.|..|    ...+.|...+..+. .....+..+.              |.|.+.+    .
T Consensus        68 ~~L~i~~v~~~D~G~Y~C~~~~~~~----~~~l~V~~~~~~~~-~~v~~g~~~~--------------l~C~~~~~p~~~  128 (184)
T 2ny1_B           68 FPLIIKNLKIEDSDTYICEVEDQKE----EVQLLVFGLTANSD-THLLQGQSLT--------------LTLESPPGSSPS  128 (184)
T ss_dssp             CCEEECSCCGGGCEEEEEEETTEEE----EEEEEEEEEEESSC-SEEETTCCEE--------------EEEECCTTCCCE
T ss_pred             EEEEEecCCHHHCEEEEEEEEcCCC----cEEEEEEEecCCCC-ceeecCCCEE--------------EEEEcCCCCCCE
Confidence            6699999999999999999998765    22233322221122 2223344554              4455544    8


Q ss_pred             EEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCC
Q psy7040         646 SQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP  705 (716)
Q Consensus       646 ~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p  705 (716)
                      +.|++++..+..    ....|.|.++...|+|.|+|.|.|..|....+..|.|...|.+|
T Consensus       129 v~W~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~  184 (184)
T 2ny1_B          129 VQCRSPRGKNIQ----GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS  184 (184)
T ss_dssp             EEEECTTSCEEE----ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC--
T ss_pred             EEEEeCCCcccc----CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCCC
Confidence            999999876532    34789999999999999999999999999999999999988764

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.14  E-value=2.3e-10  Score=90.42  Aligned_cols=83  Identities=23%  Similarity=0.358  Sum_probs=66.9

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEec-ccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG-KTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      .+.||..|++..++.+++.|+|++|.    ..+.+|+|+|+..++ .|..+. ....+++.|.+|+|++.|.|+|+|.|.
T Consensus         7 ~p~~P~~l~v~~~~~~sv~lsW~~p~----~~i~~Y~i~y~~~~~-~~~~~~~~~~~ts~~l~~L~p~t~Y~~~V~A~~~   81 (105)
T 2cum_A            7 GLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGG-QTQEILLPGGITSHQLLGLFPSTSYNARLQAMWG   81 (105)
T ss_dssp             TCCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEECTTS-CEEEEEECSSCSEEEECSCCTTCEEEEEEEEEBT
T ss_pred             CCCCCCceEEEeccCCEEEEEEcCCC----CccceEEEEEEeCCC-ceEEEEECCCccEEEECCCCCCCEEEEEEEEEeC
Confidence            45566778888999999999999885    259999999987654 565443 234589999999999999999999999


Q ss_pred             CccCCCccc
Q psy7040         133 EGESEPLET  141 (716)
Q Consensus       133 ~g~~~~s~~  141 (716)
                      .|.+.+...
T Consensus        82 ~g~s~~~~~   90 (105)
T 2cum_A           82 QSLLPPVST   90 (105)
T ss_dssp             TBCCCCEEE
T ss_pred             CcccCCEEE
Confidence            998876543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.14  E-value=2.9e-09  Score=104.37  Aligned_cols=205  Identities=9%  Similarity=0.030  Sum_probs=124.9

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCC---CCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCC
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGP---GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP  456 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~---~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~  456 (716)
                      ....+.|.++...+.+.|+|.|.|..+.   +..+.... ..+.....+|.+... +. ..+..|+.+.|.|.+. .+.+
T Consensus        72 ~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~-l~V~~~~~~p~~~~~-~~-~~v~~G~~v~L~C~~~-~~~~  147 (316)
T 3vh8_G           72 FQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVV-IMVTGNHRKPSLLAH-PG-PLVKSGERVILQCWSD-IMFE  147 (316)
T ss_dssp             BSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEE-EEEECSSCCCEEEEE-SC-SEEETTCCEEEEEEES-SCCS
T ss_pred             ceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEE-EEEecCCCCCeEEec-CC-CccCCCCeEEEEEcCC-CCCc
Confidence            4567999999999999999999876543   22222221 222223334554422 12 2378999999999995 4567


Q ss_pred             eEEEEeCCeEeccCCcEE-EEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce-----eeEEEEEEE------EEEEEEe
Q psy7040         457 TKEWLCNDITIISKDRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-----KGTAKVTVL------GCSLKWN  524 (716)
Q Consensus       457 ~~~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-----~~s~~~~v~------~v~l~W~  524 (716)
                      .+.|++++..+....... .........|.|.++...|.|.|+|.|.|..|..     +....+.+.      .+.+...
T Consensus       148 ~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~  227 (316)
T 3vh8_G          148 HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG  227 (316)
T ss_dssp             EEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC
T ss_pred             EEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC
Confidence            899999987664221111 1112245689999999999999999999998742     334455554      3333322


Q ss_pred             CCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec------cccceeEEEEcCCCCCCeEEEEEEEEcCCCC
Q psy7040         525 PPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGK  595 (716)
Q Consensus       525 ~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~------~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~  595 (716)
                      .....+......|.+.     .+.+...|++.+.......      .......+.|.++.  +.+.|+|.|.|..+.
T Consensus       228 ~~v~~G~~v~L~C~~~-----~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          228 PKVQAGESVTLSCSSR-----SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             SCCCTTSCCEEEEEES-----SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             CeecCCCcEEEEEECC-----CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence            1222333334455443     2334599999876543211      11123678888888  899999999998764

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.14  E-value=2.1e-10  Score=91.85  Aligned_cols=95  Identities=17%  Similarity=0.091  Sum_probs=70.8

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCC---ccceEEEEEEcCCCCcEE-EecccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGE---PLEGYLVEKYDPETGVWI-PVGKTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~---~i~~y~v~~~~~~~~~~~-~~~~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      +.||..|++..++.++|.|+|.+|...++.   .+.+|.|.|+......+. .......++++|.||+|++.|.|+|+|.
T Consensus         9 p~~P~~l~~~~~s~tsi~lsW~~p~~~~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~gL~P~T~Y~f~V~A~   88 (113)
T 1x5j_A            9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVT   88 (113)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEECCEEEEE
T ss_pred             CCCCcceEEEEecCCEEEEEecCCCCccccccCcCceEEEEEEECCCCCeEEEEEecCcCEEEeCCCCCCcEEEEEEEEe
Confidence            345555888899999999999988654332   144999999863222221 1122345799999999999999999999


Q ss_pred             ecCccCCCccccceEEecC
Q psy7040         131 NKEGESEPLETFSSIIARD  149 (716)
Q Consensus       131 ~~~g~~~~s~~~~~~~~~~  149 (716)
                      +..|.+.+|......+...
T Consensus        89 ~~~G~g~~S~~v~~~T~~~  107 (113)
T 1x5j_A           89 KGRRSSTWSMTAHGTTFEL  107 (113)
T ss_dssp             CSSCBCCCCCCCCEECCCS
T ss_pred             cCCccCCCcccEEeeccCC
Confidence            9999999998887776654

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.14  E-value=3.3e-10  Score=91.41  Aligned_cols=96  Identities=18%  Similarity=0.247  Sum_probs=71.5

Q ss_pred             ecCCCCCCC-CCCCcEEEeeeCCeEEEEecCCC-CCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeE
Q psy7040         318 AKNPFNQPG-KPGTPEIKDFDTDFVELAWTPPE-QNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY  395 (716)
Q Consensus       318 ~~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~p~-~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y  395 (716)
                      +.+...+|. +|.++.+.. ..++|.|+|++|. ...++.|.+|+|+|+..+...+..   .......+.+. |.+++.|
T Consensus        11 ~~T~e~~P~~~P~~v~~~~-~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~---~~~~~~~~~~~-L~~~t~Y   85 (117)
T 1wj3_A           11 VTTKKTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQV---LNTNKTSAELV-LPIKEDY   85 (117)
T ss_dssp             CCCSCCCCCCCCCSCBCCE-ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEE---EEESSSEEEEE-CCCSSCE
T ss_pred             EEecCCCCCCCCccEEEEE-eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCCeE---EeCCCcEEEEE-CCCCCEE
Confidence            334446666 678888776 8889999999973 234558999999998776444422   22344677787 9999999


Q ss_pred             EEEEEEEeCCCCCCCCCCCCceE
Q psy7040         396 EFRVLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       396 ~~~v~a~n~~g~~~~s~~~~~~~  418 (716)
                      .|+|+|+|..|.|.++....+.+
T Consensus        86 ~~~V~A~n~~G~Gp~S~~v~~~T  108 (117)
T 1wj3_A           86 IIEVKATTDGGDGTSSEQIRIPR  108 (117)
T ss_dssp             EEEEEEEESSCCCCBCCCEEECC
T ss_pred             EEEEEEECCCccCCCCCCEEEEc
Confidence            99999999999999886544433

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.14  E-value=2.3e-10  Score=89.74  Aligned_cols=87  Identities=22%  Similarity=0.321  Sum_probs=69.6

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCC-CCCccceEEEEEEeecCCC---ceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQ-NGGSPIVGYIIEKKEKYSP---IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~-~~~~~i~~y~v~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      .+|.++.+...+.+++.|+|.+|.. ..++.|.+|.|.|+..+..   .|.... ......++.|.+|+|++.|.|+|+|
T Consensus         6 ~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~-v~~~~~~~~l~~L~p~t~Y~v~V~A   84 (102)
T 3n1f_C            6 TGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDV-VEGSKQWHMIGHLQPETSYDIKMQC   84 (102)
T ss_dssp             SCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEE-EETTCSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEEE-EcCCceEEECCCCCCCCEEEEEEEE
Confidence            4788899999999999999999753 3445899999999987643   454433 3446678999999999999999999


Q ss_pred             EeCCCCCCCCCC
Q psy7040         402 VNKGGPGEPSDP  413 (716)
Q Consensus       402 ~n~~g~~~~s~~  413 (716)
                      +|..|.|+.|..
T Consensus        85 ~n~~G~G~~S~~   96 (102)
T 3n1f_C           85 FNEGGESEFSNV   96 (102)
T ss_dssp             EETTEECCCCCC
T ss_pred             ECCCcCCCCCCC
Confidence            999999998865

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.14  E-value=8.9e-10  Score=108.72  Aligned_cols=222  Identities=10%  Similarity=-0.006  Sum_probs=135.5

Q ss_pred             ccceEEEcCCCCCCeE-EEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEE----eeeCCeEEEEecCCCCCCC
Q psy7040         279 PVTGLEVEGLIPNHKY-KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK----DFDTDFVELAWTPPEQNGG  353 (716)
Q Consensus       279 ~~~~~~i~~L~p~~~y-~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~----~~~~~~i~l~W~~p~~~~~  353 (716)
                      ....+.|.++...+.+ .|+|.|.|..|........  .....    |  |..+...    ...+..+.|.|.....+. 
T Consensus        87 ~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~--~v~~~----~--p~~~~~~~~~~~~~G~~v~L~C~~~g~p~-  157 (329)
T 3oq3_B           87 KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVR--SHIRK----P--PSCIPETYELGTHDKYGIDLYCGILYAKH-  157 (329)
T ss_dssp             ETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEE--EEECC----C--CSCEEEEEETTSSTTTCEEEECCCCSCCC-
T ss_pred             ecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEE--EEEcC----C--CcEeccccceEEeCCCcEEEEeccCCCCC-
Confidence            3578999999999999 8999999988753221111  11111    1  2211111    122557888887632210 


Q ss_pred             ccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC--CCCCCCCCC-CCceEeecCCCC--Ccc
Q psy7040         354 SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK--GGPGEPSDP-TAPHIARAKKVS--PYI  428 (716)
Q Consensus       354 ~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~--~g~~~~s~~-~~~~~~~~~~~~--P~~  428 (716)
                        ...  +.|...+................+.|.++...+.+.|+|.|.|.  .|....... .....+...+..  |.+
T Consensus       158 --~~~--i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~  233 (329)
T 3oq3_B          158 --YNN--ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI  233 (329)
T ss_dssp             --CCE--EEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE
T ss_pred             --Cce--EEEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee
Confidence              111  22322220000000000011467899999999999999999997  554322211 011122221111  222


Q ss_pred             cccccccEEEecCCeEEEEEEEeccC---CC-eEEEEeCCeEe-ccCCcEEEE--eCC--CeEEEEECCCCCCCce-eEE
Q psy7040         429 NRDQLSDIKVRAGSNFEFDINVIGEP---IP-TKEWLCNDITI-ISKDRFKIV--NDD--KSTKLKVFDSKRGDSG-IYT  498 (716)
Q Consensus       429 ~~~~~~~~~~~~g~~~~~~~~v~~~p---~~-~~~W~~~~~~~-~~~~~~~~~--~~~--~~~~l~i~~l~~~~~~-~y~  498 (716)
                         .+....+..|..+.|.|.+.+.|   .+ .+.|++++..+ .........  ..+  ....|.|.++...|.| .|+
T Consensus       234 ---~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~  310 (329)
T 3oq3_B          234 ---LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYT  310 (329)
T ss_dssp             ---CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEE
T ss_pred             ---cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEE
Confidence               34457899999999999999998   77 88999998874 333322221  111  3568999999999999 999


Q ss_pred             EEEEcCCCceeeEEEEEE
Q psy7040         499 LAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       499 ~~a~n~~g~~~~s~~~~v  516 (716)
                      |.|.|..|....++.+.+
T Consensus       311 C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          311 CRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEECSSCEEEEEEEEEE
T ss_pred             EEEEecCCceEEEEEEEe
Confidence            999999999888877665

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens}

Probab=99.14  E-value=7.7e-11  Score=106.23  Aligned_cols=170  Identities=14%  Similarity=0.050  Sum_probs=96.7

Q ss_pred             CCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc-CcccceEEEcC--CCCCCeEEEEEEEEc
Q psy7040         226 PGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-EGPVTGLEVEG--LIPNHKYKFRVRAVN  302 (716)
Q Consensus       226 p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~--L~p~~~y~~~v~a~n  302 (716)
                      |.+ +.+.... ....|+|+++....+ ....|.|+|+..+...|...... ......+.|.+  +.+...|.+||+|.+
T Consensus        11 P~n-v~~~s~n-~~~iL~W~p~~~~~~-~~~~Y~Vqy~~~~~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~~Y~~RV~A~~   87 (211)
T 3g9v_A           11 PQR-VQFQSRN-FHNILQWQPGRALTG-NSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVRAAS   87 (211)
T ss_dssp             CEE-EEEEEET-TEEEEEEECCCC----CCCEEEEEEEETTCSSCEEEEEEEEECCSEEECTGGGCSTTSCEEEEEEEEE
T ss_pred             Cce-eEEEEEc-CceEEEECCCCCCCC-CCeEEEEEEEECCCCceEECccCCCCCCCEECCCCcccccCccEEEEEEEEC
Confidence            665 6775544 445699997654333 26789999998877788744211 13346677754  578999999999999


Q ss_pred             CCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCC----CCCc-------cceEEEEEEeecCCCce
Q psy7040         303 KQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQ----NGGS-------PIVGYIIEKKEKYSPIW  371 (716)
Q Consensus       303 ~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~----~~~~-------~i~~y~v~~~~~~~~~~  371 (716)
                      ..+.|.++.........  ...+++| .+.+.... .+|.|.|.+|..    .+|.       ....|+|.|...++...
T Consensus        88 ~~~~S~ws~~~~f~~~~--~t~i~PP-~v~v~~~~-~si~V~~~~P~~~~~~~ng~~~~~~~~~~l~Y~v~y~~~~~~~~  163 (211)
T 3g9v_A           88 AGSYSEWSMTPRFTPWW--ETKIDPP-VMNITQVN-GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKE  163 (211)
T ss_dssp             TTEECCCEECCCBCHHH--HCBCCCC-EEECC------CCCEEECCCCGGGGCSSCSSCHHHHTTCEEEEEEC------C
T ss_pred             CCCcCCCEecCcccccc--cCccCCC-EEEEEEcC-CEEEEEEECCCCccccCCCceeeehhcceeEEEEEEEECCCccE
Confidence            88877665443222211  1234555 37776554 589999999875    3332       13679999987653321


Q ss_pred             EEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         372 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       372 ~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      .  .........+.|.+|.|++.|.|+|+|...
T Consensus       164 ~--~~~~~~~~~~~i~~L~p~t~Ycv~V~a~~~  194 (211)
T 3g9v_A          164 Q--KVYEGAHRAVEIEALTPHSSYCVVAEIYQP  194 (211)
T ss_dssp             E--EEEEESSCCCC----------CEEEEEEET
T ss_pred             E--EEEecCCcEEEEecCCCCCeEEEEEEEEeC
Confidence            1  122346678899999999999999999964

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.14  E-value=2.9e-10  Score=93.00  Aligned_cols=92  Identities=27%  Similarity=0.360  Sum_probs=75.6

Q ss_pred             ecCCCCCCCCeEEeEEeCCeEEEEEECCC-CCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEE
Q psy7040         220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPD-DDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRV  298 (716)
Q Consensus       220 ~~~p~~p~~~~~~~~~~~~~~~l~W~~p~-~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v  298 (716)
                      ..+|.+|.+ +.+.....+++.|+|++|. ..++ ++.+|.|+++......|............+.|.+|.|++.|.|+|
T Consensus        15 ~~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   92 (120)
T 1x5f_A           15 GPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHG-DNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRV   92 (120)
T ss_dssp             CCCCCCCEE-EEEEEECSSCEEEEEECCSSCSSC-CSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEE
T ss_pred             CCCCCCCCC-cEEEecCCCEEEEEECCCCCCCCC-cEEEEEEEEEECCCCCceEEEeccCCccEEEeCCCCCCCEEEEEE
Confidence            356777777 7888888999999999987 5555 799999999887666666555444568899999999999999999


Q ss_pred             EEEcCCCCCCCCccc
Q psy7040         299 RAVNKQGKSEPLTTT  313 (716)
Q Consensus       299 ~a~n~~g~~~~~~~~  313 (716)
                      +|.|..|.+.++...
T Consensus        93 ~A~n~~G~g~~S~~~  107 (120)
T 1x5f_A           93 MAQNKHGSGESSAPL  107 (120)
T ss_dssp             EEECSSCEEEECCCE
T ss_pred             EEECCCccCCCCCCE
Confidence            999999987776654

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens}

Probab=99.14  E-value=1.7e-10  Score=104.08  Aligned_cols=170  Identities=18%  Similarity=0.141  Sum_probs=98.6

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEE---EecccCCCeEEecC--CCCCcEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI---PVGKTREPEMDVTG--LTPGHEYKFRVKA  129 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~---~~~~~~~~~~~i~~--L~~~~~y~~~v~a  129 (716)
                      +++|.++++....-..+ |+|+++....+ .+..|.|+|+..+...|.   .|.....+.+.|++  +.+...|.+||+|
T Consensus         8 lp~P~nv~~~s~n~~~i-L~W~p~~~~~~-~~~~Y~Vqy~~~~~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~~Y~~RV~A   85 (211)
T 3g9v_A            8 SLKPQRVQFQSRNFHNI-LQWQPGRALTG-NSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVRA   85 (211)
T ss_dssp             -CCCEEEEEEEETTEEE-EEEECCCC----CCCEEEEEEEETTCSSCEEEEEEEEECCSEEECTGGGCSTTSCEEEEEEE
T ss_pred             CCCCceeEEEEEcCceE-EEECCCCCCCC-CCeEEEEEEEECCCCceEECccCCCCCCCEECCCCcccccCccEEEEEEE
Confidence            45566677766666555 99998764322 267899999988777887   45556667888875  4788999999999


Q ss_pred             EecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCC
Q psy7040         130 LNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENING  209 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  209 (716)
                      .++.+.|.++....+....                                                             
T Consensus        86 ~~~~~~S~ws~~~~f~~~~-------------------------------------------------------------  104 (211)
T 3g9v_A           86 ASAGSYSEWSMTPRFTPWW-------------------------------------------------------------  104 (211)
T ss_dssp             EETTEECCCEECCCBCHHH-------------------------------------------------------------
T ss_pred             ECCCCcCCCEecCcccccc-------------------------------------------------------------
Confidence            9988888766443221110                                                             


Q ss_pred             CceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCC----CCCCc-------cceEEEEEEeCCCCCeEEccccCc
Q psy7040         210 KDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDD----DGGQP-------IEKYVVDKMDEATGRWTPAGETEG  278 (716)
Q Consensus       210 ~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~----~~~~~-------~~~y~v~~~~~~~~~~~~~~~~~~  278 (716)
                                ...+.||.  +.+... ++++.|.|.+|..    .+|..       ...|.|.+...+...-....  ..
T Consensus       105 ----------~t~i~PP~--v~v~~~-~~si~V~~~~P~~~~~~~ng~~~~~~~~~~l~Y~v~y~~~~~~~~~~~~--~~  169 (211)
T 3g9v_A          105 ----------ETKIDPPV--MNITQV-NGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVY--EG  169 (211)
T ss_dssp             ----------HCBCCCCE--EECC------CCCEEECCCCGGGGCSSCSSCHHHHTTCEEEEEEC------CEEEE--EE
T ss_pred             ----------cCccCCCE--EEEEEc-CCEEEEEEECCCCccccCCCceeeehhcceeEEEEEEEECCCccEEEEE--ec
Confidence                      02344553  555544 3589999998875    23321       35698888655433211111  13


Q ss_pred             ccceEEEcCCCCCCeEEEEEEEEc
Q psy7040         279 PVTGLEVEGLIPNHKYKFRVRAVN  302 (716)
Q Consensus       279 ~~~~~~i~~L~p~~~y~~~v~a~n  302 (716)
                      ....+.|.+|.|++.|.++|+|..
T Consensus       170 ~~~~~~i~~L~p~t~Ycv~V~a~~  193 (211)
T 3g9v_A          170 AHRAVEIEALTPHSSYCVVAEIYQ  193 (211)
T ss_dssp             SSCCCC----------CEEEEEEE
T ss_pred             CCcEEEEecCCCCCeEEEEEEEEe
Confidence            457889999999999999999985

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}

Probab=99.13  E-value=1.7e-10  Score=90.34  Aligned_cols=84  Identities=20%  Similarity=0.307  Sum_probs=68.2

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      |.+|.++.+...+.+++.|+|.+|..    .+.+|.|+|+..+...............++.|.+|.|++.|.|+|+|.|.
T Consensus         2 p~~P~~l~~~~~~~~sv~lsW~pP~~----~i~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~A~n~   77 (100)
T 3b83_A            2 LQPPFNIKVTNITLTTAVVTWQPPIL----PIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNG   77 (100)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECCSS----CCSEEEEEEEESSCTTTCEEEEECTTEEEEEECSCCTTCEEEEEEEEEET
T ss_pred             CccCCccEEEEecCCEEEEEEcCCcc----cCCEEEEEEEECCCCCCceEEEECCcceEEEECCCCCCCEEEEEEEEEeC
Confidence            67899999999999999999999753    58999999987653222222334567889999999999999999999999


Q ss_pred             CCCCCCCC
Q psy7040         405 GGPGEPSD  412 (716)
Q Consensus       405 ~g~~~~s~  412 (716)
                      .|.|.++.
T Consensus        78 ~g~s~p~~   85 (100)
T 3b83_A           78 QQYSPPVS   85 (100)
T ss_dssp             TEECCCEE
T ss_pred             CCCCCCEE
Confidence            99876653

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens}

Probab=99.13  E-value=4.5e-10  Score=95.16  Aligned_cols=78  Identities=26%  Similarity=0.438  Sum_probs=62.1

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .||.+|++.+++.+++.|+|++|....|  |.+|+|++..    ..........++|++.+|.++|.|.|+|.|.+.+|.
T Consensus       152 ~Pp~NL~At~VT~tSVtLsW~aP~~~~G--I~gY~ly~~g----~~v~~v~~~~tsyt~~gLk~~TeYsF~V~A~d~~G~  225 (238)
T 2w1n_A          152 NPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYKDG----KKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGE  225 (238)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCSCCTT--EEEEEEEETT----EEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSC
T ss_pred             CCCCceEEEEccCCeEEEEecCCCCCCC--ceeEEEEeCC----ceeEEeeccceEEEecCCCCCCEEEEEEEEEeCCCC
Confidence            4566689999999999999999986555  9999998743    111122233489999999999999999999999997


Q ss_pred             CCCc
Q psy7040         136 SEPL  139 (716)
Q Consensus       136 ~~~s  139 (716)
                      ....
T Consensus       226 ~Ss~  229 (238)
T 2w1n_A          226 VSSK  229 (238)
T ss_dssp             BCCC
T ss_pred             cccc
Confidence            6555

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=8.7e-10  Score=89.84  Aligned_cols=92  Identities=15%  Similarity=0.289  Sum_probs=71.7

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC--cEEEec-ccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG--VWIPVG-KTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~--~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      .||..+++..++.+++.|+|++|..   ..|.+|+|+|+..+..  .+.... ....+++.|.+|.+++.|.|+|+|.|.
T Consensus        20 ~~P~~l~~~~~~~~sv~l~W~~p~~---g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   96 (119)
T 2ee2_A           20 EAPTEVGVKVLSSSEISVHWEHVLE---KIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNS   96 (119)
T ss_dssp             CCCCSCEEEEEETTEEEEECCCCSC---TTCCEEEEEEEESSSCGGGCEEEEEETTCSEEEECSCCTTCEEEEEEEEECS
T ss_pred             CCCCcEEEEEccCCEEEEEecCCCC---CccceEEEEEEECCCcccCcEEEEcCCCEeEEEECCCCCCCEEEEEEEEEcC
Confidence            3455788999999999999999874   4599999999776532  222222 233479999999999999999999999


Q ss_pred             CccCCCccccceEEecCC
Q psy7040         133 EGESEPLETFSSIIARDP  150 (716)
Q Consensus       133 ~g~~~~s~~~~~~~~~~p  150 (716)
                      .|.+.++......+...+
T Consensus        97 ~G~g~~S~~~~~~T~~~~  114 (119)
T 2ee2_A           97 AGCGPPSDMIEAFTKKAS  114 (119)
T ss_dssp             SSCCCCCCCEEEECCCCC
T ss_pred             CccCCCCCCEEEECCCCC
Confidence            999998877766665433

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A

Probab=99.13  E-value=1.6e-10  Score=91.18  Aligned_cols=84  Identities=19%  Similarity=0.389  Sum_probs=66.1

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCC-CCcEEEe-cccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE-TGVWIPV-GKTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +.||..|.+..++.+++.|+|++|.    ..+.+|+|.|+... .+.+... .....++++|.+|+|++.|.|+|+|.|.
T Consensus         3 p~~P~~l~v~~~t~~sv~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~~~   78 (104)
T 2rb8_A            3 LDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRG   78 (104)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCccEEEEecCCeEEEEEcCCC----CccceEEEEEEECcCCCceEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEeC
Confidence            4566678888899999999999875    35999999997654 3334332 2334589999999999999999999999


Q ss_pred             CccCCCcccc
Q psy7040         133 EGESEPLETF  142 (716)
Q Consensus       133 ~g~~~~s~~~  142 (716)
                      .|.+.++...
T Consensus        79 ~g~s~p~~~~   88 (104)
T 2rb8_A           79 DMSSNPAKET   88 (104)
T ss_dssp             TEECCCEEEE
T ss_pred             CccCCCEEEE
Confidence            9988776543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.13  E-value=5.4e-10  Score=101.30  Aligned_cols=126  Identities=16%  Similarity=0.208  Sum_probs=93.0

Q ss_pred             CeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeec-----------------CCCCCcccccccccEEEecCCeE
Q psy7040         382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA-----------------KKVSPYINRDQLSDIKVRAGSNF  444 (716)
Q Consensus       382 ~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~-----------------~~~~P~~~~~~~~~~~~~~g~~~  444 (716)
                      .++.|.++.+.+.+.|+|.|.|  |.....  ........                 ...+|.+....  ...+.+|..+
T Consensus        61 ~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~v~~g~~v  134 (207)
T 3rbs_A           61 IEMFMEKLQDEDEGTYTFQLQD--GKATNH--STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL--SWEVTGECNV  134 (207)
T ss_dssp             EEEEESCCCGGGCEEEEEEEEE--TTEEEE--EEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE--EEEEETTTEE
T ss_pred             EEEEECCCChhhCEEEEEEEEC--CCeEEE--EEEEEEccchhhhcccccccccccccCCCCceEecC--CcEEcCCCcE
Confidence            4688999999999999999999  322110  00000000                 01245544322  4778899999


Q ss_pred             EEEEEEecc-CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE
Q psy7040         445 EFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  515 (716)
Q Consensus       445 ~~~~~v~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~  515 (716)
                      .|.|.+.+. |.+.+.|++++..+..+.++  ........|.|.++.++|.|.|+|.|.|..|....++.+.
T Consensus       135 ~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~  204 (207)
T 3rbs_A          135 LLKCKVANIKKETHIVWYKDEREISVDEKH--DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV  204 (207)
T ss_dssp             EEEEEEESCCTTCEEEEEETTEEECCCCCC--CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEeCCCCCCEEEEEECCEECCCCCce--EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEe
Confidence            999999998 99999999999998765543  2233456799999999999999999999999988877664

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.13  E-value=8.3e-10  Score=99.78  Aligned_cols=135  Identities=20%  Similarity=0.306  Sum_probs=103.2

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEE
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW  460 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W  460 (716)
                      ...+.|.++...+.+.|+|.|.|..|....+.. ..+........|.+. ..+....+..|..+.|.|.+.+.|.+.+.|
T Consensus        61 ~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~-l~V~~~p~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W  138 (197)
T 2j8h_A           61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTAS-LEVEVPAKIHLPKTL-EGMGAVHALRGEVVSIKIPFSGKPDPVITW  138 (197)
T ss_dssp             EEEEEECSCCGGGCSEEEEEEEETTEEEEEEEE-EEEEEEEEECCSSCB-TTBEEEEEETTCCCEEEEEEEEESCCEEEE
T ss_pred             EEEEEECcCCHHhCEEEEEEEEECCCceeEEEE-EEEcCCCcCCCCccc-cccCeEEEeCCCEEEEEEEEEecCCCcEEE
Confidence            347899999999999999999998765321111 111111111112111 123457788999999999999999999999


Q ss_pred             EeCCeEeccCCcEEEEeCCCeEEEEECC-CCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         461 LCNDITIISKDRFKIVNDDKSTKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~-l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      ++++..+....++.+........|.|.+ +...|.|.|+|.|.|..|....++.+.|.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          139 QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            9999999888888887777788999999 99999999999999999998888777663

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.13  E-value=2.5e-10  Score=91.10  Aligned_cols=80  Identities=26%  Similarity=0.430  Sum_probs=67.3

Q ss_pred             ceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc-cCCCeEEecCCCCCcEEEEEEEEEecCccCCCc
Q psy7040          61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK-TREPEMDVTGLTPGHEYKFRVKALNKEGESEPL  139 (716)
Q Consensus        61 l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s  139 (716)
                      +.+...+.+++.|+|++|.. .+..+.+|.|+|+..+...|..... ...++++|.+|.+++.|.|+|+|.|..|.+.++
T Consensus        13 ~~v~~~~~~sv~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s   91 (107)
T 2dn7_A           13 MMISTTAMNTALLQWHPPKE-LPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEF   91 (107)
T ss_dssp             EEEEECSTTEEEEEEECCSS-CSSCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEETTEEEEEE
T ss_pred             EeEEecCCCEEEEEECCCCC-CCCceeEEEEEEEECCCCCCEEEEeCCCccEEEeCCCCCCCEEEEEEEEEcCCcccCCe
Confidence            57788889999999999874 4445999999999888777766543 335799999999999999999999999999888


Q ss_pred             cc
Q psy7040         140 ET  141 (716)
Q Consensus       140 ~~  141 (716)
                      ..
T Consensus        92 ~~   93 (107)
T 2dn7_A           92 EK   93 (107)
T ss_dssp             EE
T ss_pred             ee
Confidence            74

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.13  E-value=4.2e-09  Score=95.72  Aligned_cols=180  Identities=18%  Similarity=0.201  Sum_probs=119.7

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEec---ccCCCeEEecCCC--CCcEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG---KTREPEMDVTGLT--PGHEYKFRVK  128 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~---~~~~~~~~i~~L~--~~~~y~~~v~  128 (716)
                      .+++|.++++....-.. .|+|+++...+ .....|.|+|..-+...|....   ....+.+.|+++.  +...|.+||+
T Consensus         8 ~lp~P~nv~~~s~n~~~-iL~W~p~~~~~-~~~~~Y~Vqy~~~~~~~W~~~~~C~~~~~~~Cdlt~~~~~~~~~Y~~RV~   85 (221)
T 4doh_R            8 GLPKPANITFLSINMKN-VLQWTPPEGLQ-GVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYARVR   85 (221)
T ss_dssp             ---CCEEEEEEEETTEE-EEEEECCCCSS-CCCCEEEEEEEETTSCCCEECGGGSSBSSSEEECTTTTCCSSCCEEEEEE
T ss_pred             CCCCCceeEEEEECCcE-EEEEcCCCCCC-CCCeEEEEEEEECCCCCceecccccCCCCCEEeCCCccccCCCCEEEEEE
Confidence            35667778887766655 59999875322 3477899999987777897643   3446889999975  5668999999


Q ss_pred             EEecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCC
Q psy7040         129 ALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENIN  208 (716)
Q Consensus       129 a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  208 (716)
                      |.++.+.|.++....+....                                                            
T Consensus        86 A~~g~~~S~w~~~~~F~p~~------------------------------------------------------------  105 (221)
T 4doh_R           86 AIWGTKCSKWAESGRFYPFL------------------------------------------------------------  105 (221)
T ss_dssp             EESSSCBCCCEECCCBCHHH------------------------------------------------------------
T ss_pred             EEcCCcccCCEecCceechh------------------------------------------------------------
Confidence            99987777665432211100                                                            


Q ss_pred             CCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCC----CCC--------ccceEEEEEEeCCCCCeEEcccc
Q psy7040         209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDD----GGQ--------PIEKYVVDKMDEATGRWTPAGET  276 (716)
Q Consensus       209 g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~----~~~--------~~~~y~v~~~~~~~~~~~~~~~~  276 (716)
                                 .+...||.  +.+. ..++++.|.|.+|...    +|.        +...|.|.+...+....... . 
T Consensus       106 -----------~t~igPP~--v~v~-~~~~~l~V~~~~P~~~~~~~~~~~~s~~~i~~~l~Y~V~y~~~~~~~~~~~-~-  169 (221)
T 4doh_R          106 -----------ETQIGPPE--VALT-TDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQ-C-  169 (221)
T ss_dssp             -----------HCBCCCCE--EEEE-CCSSCEEEEEECCBCCCSSTTSCCCBHHHHSTTCEEEEEEEETTTTEEEEE-E-
T ss_pred             -----------hCccCCCE--EEEE-ECCCEEEEEEeCCCcccccCCCCceEHHHhcCceEEEEEEEECCCCcEEEE-e-
Confidence                       12345554  5665 4678999999987642    221        13489998877654432111 1 


Q ss_pred             CcccceEEEcCCCCCCeEEEEEEEEcC--CCCCCCCcc
Q psy7040         277 EGPVTGLEVEGLIPNHKYKFRVRAVNK--QGKSEPLTT  312 (716)
Q Consensus       277 ~~~~~~~~i~~L~p~~~y~~~v~a~n~--~g~~~~~~~  312 (716)
                       .....+.|.+|.|++.|.++|+|...  .|.+..+..
T Consensus       170 -~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~  206 (221)
T 4doh_R          170 -VTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEK  206 (221)
T ss_dssp             -ECSSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEE
T ss_pred             -ecCcEEEEecCCCCCcEEEEEEEEEcCCCCCCCCCCC
Confidence             23468999999999999999999864  455555444

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A

Probab=99.12  E-value=5.1e-10  Score=103.14  Aligned_cols=169  Identities=16%  Similarity=0.092  Sum_probs=110.0

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc--------cCCCeEE--ecCCCCCcEEEEE
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--------TREPEMD--VTGLTPGHEYKFR  126 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~--------~~~~~~~--i~~L~~~~~y~~~  126 (716)
                      .|.+|.........+.++|+++.. ++....+|.|.|+..+. .|..|..        .....+.  +.++...+.|.|+
T Consensus        23 ~P~nl~C~~~~~~~l~C~W~~~~~-~~~~~~~y~l~y~~~~~-~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~~~y~~~  100 (227)
T 1eer_B           23 GPEELLCFTERLEDLVCFWEEAAS-AGVGPGQYSFSYQLEDE-PWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELR  100 (227)
T ss_dssp             STTSCEEEBSSSSCCEEEEEESCC-SSCCTTSEEEEEEETTS-CCEEECEEEEEETTTEEEEEEECCGGGCCBSSCEEEE
T ss_pred             CCcCCeEECCCCCEEEEEecCCCC-CCCCCccEEEEEEcCCC-CceeccceeccCCCCCceEEEEeCCCcceeeEEEEEE
Confidence            355666666677899999998774 33346789999986533 3544421        1112333  3567778889999


Q ss_pred             EEEEecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         127 VKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       127 v~a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      |.|.+..+..     ...+...                                                          
T Consensus       101 V~a~~~~~~~-----~~~~~~~----------------------------------------------------------  117 (227)
T 1eer_B          101 VTAASGAPRY-----HRVIHIN----------------------------------------------------------  117 (227)
T ss_dssp             EEETTSCEEE-----EEEECGG----------------------------------------------------------
T ss_pred             EEecCCCccE-----EEEEEee----------------------------------------------------------
Confidence            9985422200     0000000                                                          


Q ss_pred             CCCCceeEEEEEEecCCCCCCCCeEEeEEe-CCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEE
Q psy7040         207 INGKDSVEVEVIVLDKPSPPGGPLKVSNVH-AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEV  285 (716)
Q Consensus       207 ~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~-~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i  285 (716)
                                  -..+|.+|.+ +.+.... ..++.|+|.+|.......+..|.|.++......|............+.|
T Consensus       118 ------------~~v~p~pP~~-l~~~~~~~~~~l~v~W~~P~~~~~~~~l~Yev~y~~~~~~~w~~~~~~~~~~~~~~l  184 (227)
T 1eer_B          118 ------------EVVLLDAPVG-LVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVL  184 (227)
T ss_dssp             ------------GSEECCCCEE-EEEEECSSTTCEEEEEECCSSCSCGGGEEEEEEEECCSSSCCCCEEEECTTCCEEEE
T ss_pred             ------------eeEccCcCcc-eEEEEcCCCCeEEEEEcCCCCcccccceEEEEEEEcCCCCCcEEEEEEecCceEEEE
Confidence                        0025788887 7777654 7899999998764322236799999987766656542122244678999


Q ss_pred             cCCCCCCeEEEEEEEEcC
Q psy7040         286 EGLIPNHKYKFRVRAVNK  303 (716)
Q Consensus       286 ~~L~p~~~y~~~v~a~n~  303 (716)
                      .+|.|++.|.++|+|...
T Consensus       185 ~~L~p~t~Y~vqVRa~~~  202 (227)
T 1eer_B          185 SNLRGRTRYTFAVRARMA  202 (227)
T ss_dssp             CCCCSSCEEEEEEEEEEC
T ss_pred             cccCCCCeEEEEEEEeEC
Confidence            999999999999999964

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A

Probab=99.12  E-value=4.1e-10  Score=88.18  Aligned_cols=79  Identities=16%  Similarity=0.267  Sum_probs=64.2

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC-cEEEec-ccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-VWIPVG-KTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~-~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +.||..|++.+++.+++.|+|++|..  +..+.+|+|+|...++. .+.... ....++++|.+|.|++.|.|+|+|.+.
T Consensus         5 ~~~P~~l~v~~~t~~Sv~l~W~~p~~--~~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~~~V~A~~~   82 (101)
T 3k2m_C            5 SSVPTKLEVVAATPTSLLISWDAPMS--SSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWGE   82 (101)
T ss_dssp             EBSSCEEEEEEEETTEEEEEECCCCT--TSCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEEE
T ss_pred             CCCCcceEEeecCCCEEEEEecCCCC--CCceeeEEEEEEECCCCCccEEEEcCCCccEEEECCCCCCCEEEEEEEEEeC
Confidence            46788899999999999999999862  34599999999876543 333222 234589999999999999999999999


Q ss_pred             Ccc
Q psy7040         133 EGE  135 (716)
Q Consensus       133 ~g~  135 (716)
                      .|.
T Consensus        83 ~~~   85 (101)
T 3k2m_C           83 DSA   85 (101)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            887

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=2.1e-10  Score=91.62  Aligned_cols=93  Identities=24%  Similarity=0.264  Sum_probs=71.9

Q ss_pred             CCCCCCC-CcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         323 NQPGKPG-TPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       323 ~~p~~p~-~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      .+|.+|. ++.....+.+++.|+|.+|..++ ++|.+|.|+++......|....  .....+++|.+|.+++.|.|+|+|
T Consensus         8 ~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~v~~L~p~t~Y~frV~A   84 (110)
T 2db8_A            8 PVPATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVY--VGKETMCTVDGLHFNSTYNARVKA   84 (110)
T ss_dssp             CCCCCCBCCCCCCSCSSSEEEECCBCCTTCC-SCCSEEEEEECCSSSSCCEEEE--EESCSCEEEECCCSSSCCEEEEEE
T ss_pred             CCCCCccccceeeccCCCEEEEEECCCCCCC-CCccEEEEEEEeCCCCceEEEE--eCCcCEEEECCCCCCCEEEEEEEE
Confidence            3454443 44444557899999999987654 6899999999887666776554  236788999999999999999999


Q ss_pred             EeCCCCCCCCCCCCceE
Q psy7040         402 VNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~~  418 (716)
                      .|..|.|.+|......+
T Consensus        85 ~n~~G~s~~S~~~~~~T  101 (110)
T 2db8_A           85 FNKTGVSPYSKTLVLQT  101 (110)
T ss_dssp             ECSSCBCCCCSCEECCC
T ss_pred             EeCCcCCCCCCCEEEEc
Confidence            99999999887654433

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.12  E-value=8.6e-10  Score=87.36  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=71.3

Q ss_pred             CCCCCCCCCCcEEEeeeCCeEEEEe--cCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         321 PFNQPGKPGTPEIKDFDTDFVELAW--TPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       321 ~~~~p~~p~~~~~~~~~~~~i~l~W--~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      ...+|.+|.++++...+.++|.|+|  .+|...+| . .+|.|+|+... .. .....   ....+.|.+|.|++.|.|+
T Consensus         6 ~~~~P~~p~~l~~~~~~~~sv~l~W~~~~P~~~ng-~-~~Y~v~y~~~~-~~-~~~~~---~~~~~~i~~L~p~t~Y~f~   78 (107)
T 1x5a_A            6 SGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGG-N-LSYELHVLNQD-EE-WHQMV---LEPRVLLTKLQPDTTYIVR   78 (107)
T ss_dssp             TTCCCCCSCCCCEEEEETTEEEEECCCCCSSCCSS-C-CEEEEEEECSS-CE-EEEEE---SSSEEEEESCCSSCEEEEE
T ss_pred             CCCCCCCCCceEEEecCCCEEEEEECCCCCCCCCC-c-eEEEEEEEeCC-CC-ceEEE---ecceEEECCCCCCCEEEEE
Confidence            4467889999999999999999999  88876655 4 89999998752 11 11111   1233999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceE
Q psy7040         399 VLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~~  418 (716)
                      |+|.|..|.|.+|....+.+
T Consensus        79 V~A~~~~G~g~~S~~~~~~T   98 (107)
T 1x5a_A           79 VRTLTPLGPGPFSPDHEFRT   98 (107)
T ss_dssp             EEEECSSSCCCCCCCEEEEC
T ss_pred             EEEECCCccCCCCCCEEEEE
Confidence            99999999999888655444

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.12  E-value=5.3e-09  Score=99.37  Aligned_cols=196  Identities=12%  Similarity=0.075  Sum_probs=127.7

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEE-eccCCCeE
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTK  458 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v-~~~p~~~~  458 (716)
                      ....+.|.++...+...|+|.|.|..+..    . ....+..   +|.+  .......+.+|+.+.|.|.+ .+.|.+.+
T Consensus        46 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~----~-~~l~v~~---~~~~--~~~~~~~~~~g~~v~l~C~~~~~~p~~~v  115 (262)
T 3rjd_A           46 STPSYRITSASVNDSGEYRCQRGLSGRSD----P-IQLEIHR---GWLL--LQVSSRVFTEGEPLALRCHAWKDKLVYNV  115 (262)
T ss_dssp             CSSEEEESSCCGGGCEEEEEEESSSCCCC----C-EEEEEEC---SSEE--EEESCSEEETTSCEEEEEEEGGGCCCEEE
T ss_pred             cCCeEEEecCCcccCeEEEEEEecCCccc----c-EEEEEec---cceE--ecCCCeEEecCCeEEEEEEccCCCCCceE
Confidence            46779999999999999999998754421    1 1122211   2221  11234567899999999999 78888899


Q ss_pred             EEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE----EEEEEEeCC--CCCCCC
Q psy7040         459 EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL----GCSLKWNPP--EDDGGA  532 (716)
Q Consensus       459 ~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~----~v~l~W~~p--~~~~~~  532 (716)
                      .|++++..+...        .....|.|.++...|.|.|+|.|.|..+..+....+.+.    ...+.-.+.  ...+..
T Consensus       116 ~W~~~g~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~  187 (262)
T 3rjd_A          116 LYYRNGKAFKFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNL  187 (262)
T ss_dssp             EEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCC
T ss_pred             EEEECCcccccc--------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCe
Confidence            999998876321        123479999999999999999999999777776666665    122222221  111222


Q ss_pred             ceeeEEEEEEec-CCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy7040         533 PIEYYMVEKMET-DTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD  596 (716)
Q Consensus       533 ~i~~y~v~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~  596 (716)
                      ....|.+...+. ........|++.+......   .....+.|.++...+.+.|+|.|.|..|..
T Consensus       188 ~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          188 VTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR---NTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             EEEEEECCCCCC-----EEEEEEETTEEEEEE---ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             EEEEeEcccCCCCCCccEEEEEEeCCcEeccc---CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence            222333222111 1111225777777655422   223679999999999999999999999853

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.12  E-value=2.6e-10  Score=91.72  Aligned_cols=91  Identities=18%  Similarity=0.351  Sum_probs=70.3

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC--cEEEecccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG--VWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~--~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      +|..+.+...+.+++.|+|++|... +..|.+|+|+|+..+..  .+... ....+.+.|.+|.+++.|.|+|+|.|..|
T Consensus        13 ~P~~l~~~~~~~~sv~l~W~~p~~~-~g~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   90 (111)
T 1x5l_A           13 QVVVIRQERAGQTSVSLLWQEPEQP-NGIILEYEIKYYEKDKEMQSYSTL-KAVTTRATVSGLKPGTRYVFQVRARTSAG   90 (111)
T ss_dssp             CCCCEECSCBCSSCEEEEECCCSCC-CSCCCEEEEEEEESSSCCSSCEEE-EESSSEEEECSCCTTCEEEECEEEEETTE
T ss_pred             CCceEEEEEcCCCEEEEEECCCCCC-CCEEEEEEEEEEECCCCceeEEEe-cCCCCEEEEcCCCCCCEEEEEEEEEeCCc
Confidence            3445666688899999999999754 44599999999876532  23222 33458999999999999999999999999


Q ss_pred             cCCCccccceEEecC
Q psy7040         135 ESEPLETFSSIIARD  149 (716)
Q Consensus       135 ~~~~s~~~~~~~~~~  149 (716)
                      .+.+|......+...
T Consensus        91 ~g~~S~~~~~~T~~~  105 (111)
T 1x5l_A           91 CGRFSQAMEVETGKP  105 (111)
T ss_dssp             ECCCCCCEEEECCCT
T ss_pred             CCCCcccEEEEcCCC
Confidence            999887776666543

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.12  E-value=2.9e-10  Score=101.33  Aligned_cols=58  Identities=12%  Similarity=-0.044  Sum_probs=47.0

Q ss_pred             EEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      .+.+|+.+.|.|.+.+ +.+.+.|++++...          ......|.|.++.+.|.|.|+|.|.|..
T Consensus        18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~----------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   75 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR----------YQDQAVLFIPAMKRSLAGRYRCSYQNGS   75 (184)
T ss_dssp             EEETTCCEEEEEECST-TCSEEEEEETTTCC----------EESSSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cccCCCcEEEEEeCCC-CCCEEEEEECCccc----------cCcccEEEECcCChhhCceEEEEEEcCC
Confidence            6889999999999987 77899999987641          1124478899999999999999887654

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=4.3e-10  Score=91.61  Aligned_cols=89  Identities=27%  Similarity=0.445  Sum_probs=75.5

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA  300 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a  300 (716)
                      +.|.+|.+ +.+.....+++.|+|++|..+ | ++.+|.|+++......|..+.........+.|.+|.|++.|.|+|+|
T Consensus        16 ~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~-g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   92 (118)
T 2yrz_A           16 GVPDTPTR-LVFSALGPTSLRVSWQEPRCE-R-PLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRA   92 (118)
T ss_dssp             SCCCCCCC-CEECCCBTTEEEEECCCCCCS-S-CEEEEEEEEEBSSSCCEEEEEESCTTCCEEEEESCCTTCEEEEEEEE
T ss_pred             CCCCCCCc-eEEEeCCCCEEEEEeCCCCCC-C-CccEEEEEEEECCCCceEEEEcCCCCcCEEEeCCCCCCCEEEEEEEE
Confidence            56788887 788888999999999988765 4 79999999998777777766554456789999999999999999999


Q ss_pred             EcCCCCCCCCcc
Q psy7040         301 VNKQGKSEPLTT  312 (716)
Q Consensus       301 ~n~~g~~~~~~~  312 (716)
                      .|..|.+.++..
T Consensus        93 ~n~~G~g~~S~~  104 (118)
T 2yrz_A           93 QSQEGWGREREG  104 (118)
T ss_dssp             EESSCEEEEEEE
T ss_pred             EcCCcCCCCcCC
Confidence            999998877654

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.12  E-value=3e-10  Score=93.31  Aligned_cols=88  Identities=18%  Similarity=0.279  Sum_probs=66.9

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .||..|++...+ +++.|+|++|...+ ..|.+|.|+|+...............++++|.+|.|++.|.|+|+|.|..|.
T Consensus        29 ~~P~~l~~~~~~-~sv~l~W~~P~~~~-g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  106 (126)
T 1x5i_A           29 EVPSSLHVRPLV-TSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGE  106 (126)
T ss_dssp             CSCSEEEEEEET-TEEEEEEECCSCTT-BCCCEEEEEECSSCGGGEEEECCTTCCEEEECSCCSSCEECCEEEEECSSCB
T ss_pred             CCCCeeEEEecC-CEEEEEEcCCCCCC-CCEeEEEEEEEcCCCCceEEEeCCCeeEEEEeCCCCCCEEEEEEEEEeCCcc
Confidence            345557777886 99999999997544 4599999999853322223333344589999999999999999999999999


Q ss_pred             CCCccccceE
Q psy7040         136 SEPLETFSSI  145 (716)
Q Consensus       136 ~~~s~~~~~~  145 (716)
                      +.++.....+
T Consensus       107 g~~s~~~~~T  116 (126)
T 1x5i_A          107 GIPLYESAVT  116 (126)
T ss_dssp             CCCCCCCEEC
T ss_pred             CcceeeEEec
Confidence            9888654433

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=2.2e-10  Score=94.25  Aligned_cols=89  Identities=22%  Similarity=0.353  Sum_probs=67.3

Q ss_pred             CCCCC-CceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcC-----------CCCcEEEecccCCCeEEecCCCCCcE
Q psy7040          55 LDPEG-PLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP-----------ETGVWIPVGKTREPEMDVTGLTPGHE  122 (716)
Q Consensus        55 ~~p~~-~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~-----------~~~~~~~~~~~~~~~~~i~~L~~~~~  122 (716)
                      +.||. .+.+..++.+++.|+|++|..+ +  +..|.++|+..           ....|..+.....++++|.+|.|++.
T Consensus        16 P~~P~~~~~~~~~~~~sv~L~W~~p~~~-g--~~~Y~~~Y~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~gL~p~t~   92 (127)
T 2dmk_A           16 PNPPSIREELCTASHDTITVHWISDDEF-S--ISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTR   92 (127)
T ss_dssp             CCCCEEEEEEEEEETTEEEEEEECSCCS-S--EEEEEEEEEEESCCSCHHHHHHTGGGSEEEEEECSSEEEEESCCSSCE
T ss_pred             CcCCCCCCEEEeeeCCEEEEEECCCCCC-C--ccceEEEEEEecccccccccccCCCCcEEeecccCCeEEECCCCCCCE
Confidence            34444 5678899999999999998743 2  78899988741           12467766555568999999999999


Q ss_pred             EEEEEEEEecCccCCCccccceEEe
Q psy7040         123 YKFRVKALNKEGESEPLETFSSIIA  147 (716)
Q Consensus       123 y~~~v~a~~~~g~~~~s~~~~~~~~  147 (716)
                      |.|||+|+|..|.+ ++......+.
T Consensus        93 Y~frV~A~N~~G~~-~S~~v~~~T~  116 (127)
T 2dmk_A           93 YIFIVKAINQAGSR-NSEPTRLKTN  116 (127)
T ss_dssp             EEEEEEEEESSCEE-ECCCEEEECC
T ss_pred             EEEEEEEEeCCCCC-CCcCeEeEeC
Confidence            99999999999984 4444444443

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=6.5e-10  Score=87.67  Aligned_cols=85  Identities=25%  Similarity=0.360  Sum_probs=66.3

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc---EEEecccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV---WIPVGKTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~---~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      ++.||..|++..++.+++.|+|++|.   +  +.+|+|+|+..+...   +...... ..+++|.+|+|++.|.|+|+|.
T Consensus         8 ~~~~P~~l~~~~~~~~sv~lsW~~p~---~--~~~Y~v~y~~~~~~~~~~~~~~~~~-~~~~~l~~L~p~t~Y~~~V~A~   81 (104)
T 2dkm_A            8 PLPPPRALTLAAVTPRTVHLTWQPSA---G--ATHYLVRCSPASPKGEEEEREVQVG-RPEVLLDGLEPGRDYEVSVQSL   81 (104)
T ss_dssp             SCCCCCCCEEEEECSSEEEEECCCCS---S--CSEEEEEEEESSSCCSSCCEEEEES-SSEEEEESCCTTCCEEEEEEEE
T ss_pred             CCCCCceeEEEecCCCEEEEEEeCCC---C--CCeEEEEEEECCCCCCcceEEEecC-CCEEEECCCCCCCEEEEEEEEE
Confidence            45678889999999999999999875   1  489999998765532   2222222 2499999999999999999999


Q ss_pred             ecCccCCCccccce
Q psy7040         131 NKEGESEPLETFSS  144 (716)
Q Consensus       131 ~~~g~~~~s~~~~~  144 (716)
                      |..|.+.+......
T Consensus        82 ~~~~~s~p~~~~~~   95 (104)
T 2dkm_A           82 RGPEGSEARGIRAR   95 (104)
T ss_dssp             CSSSBCCCEEEECC
T ss_pred             CCCCCCCCEEEEEE
Confidence            99888877654433

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.10  E-value=9.6e-09  Score=101.25  Aligned_cols=214  Identities=13%  Similarity=0.105  Sum_probs=125.5

Q ss_pred             CCCCeEEecCCCCCCeEEEEEEEEeCCCCCCC--CCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCC
Q psy7040         379 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP--SDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP  456 (716)
Q Consensus       379 ~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~--s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~  456 (716)
                      .....+.|.++...+...|+|.|.|..|....  ........+...+.+|.+..   ....+..|..+.|.|.+.+.|++
T Consensus        71 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~---~~~~~~~g~~~~l~C~~~g~p~~  147 (327)
T 2wng_A           71 NMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSG---PAARATPQHTVSFTCESHGFSPR  147 (327)
T ss_dssp             CCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEEC---CSSCBCTTCEEEEEEEEEEEBSS
T ss_pred             CceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeec---cccccCCCCEEEEEEEEeCccCC
Confidence            34567999999999999999999997653110  00112233333444555431   13457889999999999988876


Q ss_pred             --eEEEEeCCeEeccCCcEEEEeCC-C----eEEEEECCCCCCCceeEEEEEEcCCCce-ee--EEEEEE--E---EEEE
Q psy7040         457 --TKEWLCNDITIISKDRFKIVNDD-K----STKLKVFDSKRGDSGIYTLAVKNSWGTD-KG--TAKVTV--L---GCSL  521 (716)
Q Consensus       457 --~~~W~~~~~~~~~~~~~~~~~~~-~----~~~l~i~~l~~~~~~~y~~~a~n~~g~~-~~--s~~~~v--~---~v~l  521 (716)
                        .+.|++++..+............ .    ...|.|.....++.|.|+|.|.|..|.. ..  +..+.+  .   .+.+
T Consensus       148 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~  227 (327)
T 2wng_A          148 DITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEV  227 (327)
T ss_dssp             CCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEE
T ss_pred             CcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEE
Confidence              89999999887643322111111 0    2256777777777899999999988763 22  222211  1   3333


Q ss_pred             EEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec------cccc----eeEEEEcCCCCCCeEEEEEEEEc
Q psy7040         522 KWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID------NVDY----FTKITIRPLQRSDTAQYTVTATN  591 (716)
Q Consensus       522 ~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~------~~~~----~~~~~i~~L~~~~~y~~~v~a~n  591 (716)
                      .-.. ...+......|.+......  ...+.|++.+.......      ..+.    ...+.|......+.+.|+|.|.|
T Consensus       228 ~~~~-~~~G~~v~l~C~~~g~~p~--~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N  304 (327)
T 2wng_A          228 TQQP-VRAENQVNVTCQVRKFYPQ--RLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEH  304 (327)
T ss_dssp             EEEC-CSSTTCCEEEEEEEEEBSS--CEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEE
T ss_pred             ecCC-cCCCCcEEEEEEEccccCC--CcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEe
Confidence            3222 2333444555655542211  11499999877654321      0111    13466777888899999999999


Q ss_pred             CCCCCcc
Q psy7040         592 SQGKDQV  598 (716)
Q Consensus       592 ~~G~~~~  598 (716)
                      .+|....
T Consensus       305 ~~~~~~s  311 (327)
T 2wng_A          305 DGQPAVS  311 (327)
T ss_dssp             TTCCCEE
T ss_pred             CCCCCch
Confidence            9986433

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=99.10  E-value=5.6e-09  Score=94.34  Aligned_cols=170  Identities=11%  Similarity=0.051  Sum_probs=104.0

Q ss_pred             CCeEEEEecCCCCCCCCccc-eEEEEEEcCCC-----------CcEEEecc--cCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          68 KDGCTLKWNKPKDDGGEPLE-GYLVEKYDPET-----------GVWIPVGK--TREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        68 ~~s~~l~W~~p~~~~~~~i~-~y~v~~~~~~~-----------~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      -..+..+|++... .+. .. .|.+.|...+.           +....|..  .....+.+..+...+.|.|+|.|.|..
T Consensus        15 ~~~~~C~W~~g~~-~~l-~t~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~~~~~Y~~~V~a~N~~   92 (206)
T 3v6o_A           15 LTKMTCRWSTSTI-QSL-AESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTMWIRINHSL   92 (206)
T ss_dssp             SSCEEEEECCCC----------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCCTTSCEEEEEEEC---
T ss_pred             CcEEEEEecCCCc-CCc-ccccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHHhcccEEEEEEEEcCC
Confidence            4689999997552 222 23 68887764321           11233322  122478888888889999999999988


Q ss_pred             ccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCcee
Q psy7040         134 GESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSV  213 (716)
Q Consensus       134 g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  213 (716)
                      |...+...  .+...                                                                 
T Consensus        93 G~~~s~~~--~~~~~-----------------------------------------------------------------  105 (206)
T 3v6o_A           93 GSLDSPPT--CVLPD-----------------------------------------------------------------  105 (206)
T ss_dssp             CCEECCCE--EECGG-----------------------------------------------------------------
T ss_pred             ccccCCcc--cEeec-----------------------------------------------------------------
Confidence            75432211  11000                                                                 


Q ss_pred             EEEEEEecCCCCCCCCeEEeEE-eCCeEEEEEECCCCCCCCccceEEEEEEeCC-CCCeEEccccCcccceEEEcCCCCC
Q psy7040         214 EVEVIVLDKPSPPGGPLKVSNV-HAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA-TGRWTPAGETEGPVTGLEVEGLIPN  291 (716)
Q Consensus       214 ~~~~~v~~~p~~p~~~~~~~~~-~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~L~p~  291 (716)
                           -..+|.||.+ +.+... ...++.|+|.+|....  ....|.|+++..+ ...|............+.+.+|.|+
T Consensus       106 -----~~vkp~pP~~-l~v~~~~~~~~l~l~W~~P~~~~--~~l~yev~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~  177 (206)
T 3v6o_A          106 -----SVVKPLPPSS-VKAEITINIGLLKISWEKPVFPE--NNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLC  177 (206)
T ss_dssp             -----GGBCCCCCCS-CEEEEETTTTEEEEEC----------CEEEEEEEEESSSSCCCEEEEECC---CEEEECCSCTT
T ss_pred             -----ceEcCCCCCc-eEeEEecCCCeEEEEECCCCCCC--CcEEEEEEEEECCCCCceEEEecccCcceeEEeecCCCC
Confidence                 0136888888 777765 5789999999875432  3579999998876 4578766543233357899999999


Q ss_pred             CeEEEEEEEEcCCCCCCCCcccc
Q psy7040         292 HKYKFRVRAVNKQGKSEPLTTTA  314 (716)
Q Consensus       292 ~~y~~~v~a~n~~g~~~~~~~~~  314 (716)
                      +.|.|+|+|.+..|.+.++..+.
T Consensus       178 t~Y~vqVRa~~~~~~G~WSeWS~  200 (206)
T 3v6o_A          178 AVYAVQVRCKRLDGLGYWSNWSN  200 (206)
T ss_dssp             SCEEEEEEEEETTSCSCCCCCCC
T ss_pred             CEEEEEEEEecCCCCCcCCCCCc
Confidence            99999999999777776666653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.10  E-value=2.8e-10  Score=103.92  Aligned_cols=121  Identities=16%  Similarity=0.194  Sum_probs=80.6

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCC-CCccceeeeccCCCCCCccceeec-----cceeEEEEEEeeEEEEeeeeccCce
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQG-KDQVFIEVVVTDKPSAPEGPIQWL-----LTLTDVTWEISNYLQELHSSLMPIS  643 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G-~~~~s~~~~v~~~p~~~~~~~~~~-----~~~v~l~w~i~~y~v~~~~~~~~~~  643 (716)
                      ..+.|.++...+.+.|+|.+.|..+ .......+.|..++..|. +....     +..+.              |.|.+.
T Consensus        71 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~-i~~~~~~~~~g~~v~--------------l~C~~~  135 (208)
T 3r4d_A           71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPF-LQVTNTTVKELDSVT--------------LTCLSN  135 (208)
T ss_dssp             SCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCE-EEESCSSCCTTCCEE--------------EEEECS
T ss_pred             CeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCE-EecCCceEeeCCCEE--------------EEEECC
Confidence            5788999999999999999999754 323333334555555454 22211     22333              556666


Q ss_pred             e---eEEEEeCCeEeeecc----cceeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEEEecCCCCC
Q psy7040         644 L---ESQYLMNDKRVTIDN----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAP  705 (716)
Q Consensus       644 ~---~~~W~~~~~~~~~~~----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~v~~~p~~p  705 (716)
                      +   .+.|+++|..+....    ......|.|.++...|.|.|+|.|.|..|... ....|.|..+|..+
T Consensus       136 ~~pp~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~~  205 (208)
T 3r4d_A          136 DIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH  205 (208)
T ss_dssp             CTTCEEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC------
T ss_pred             CCCCceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCccc
Confidence            5   899999998876541    12226899999999999999999999999874 44666666655443

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A

Probab=99.10  E-value=6.3e-10  Score=87.11  Aligned_cols=82  Identities=16%  Similarity=0.162  Sum_probs=67.3

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEe
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  403 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n  403 (716)
                      .|.+|.++.+...+.+++.|+|.+|..  ++.+.+|+|.|...+...+...........+++|.+|.|++.|.|+|+|.+
T Consensus         4 ~~~~P~~l~v~~~t~~Sv~l~W~~p~~--~~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~~~V~A~~   81 (101)
T 3k2m_C            4 VSSVPTKLEVVAATPTSLLISWDAPMS--SSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWG   81 (101)
T ss_dssp             EEBSSCEEEEEEEETTEEEEEECCCCT--TSCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCCCcceEEeecCCCEEEEEecCCCC--CCceeeEEEEEEECCCCCccEEEEcCCCccEEEECCCCCCCEEEEEEEEEe
Confidence            367899999999999999999999762  347999999999866432222233456788999999999999999999999


Q ss_pred             CCCC
Q psy7040         404 KGGP  407 (716)
Q Consensus       404 ~~g~  407 (716)
                      ..|.
T Consensus        82 ~~~~   85 (101)
T 3k2m_C           82 EDSA   85 (101)
T ss_dssp             ECTT
T ss_pred             CCcc
Confidence            9887

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=8.2e-10  Score=92.42  Aligned_cols=110  Identities=21%  Similarity=0.299  Sum_probs=80.2

Q ss_pred             CCC-CCCCCeEEeEEeCCeEEEEEECC--CCCCCCccceEEEEEEeCCCCC--eEEccccCcccceEEEcCCCCCCeEEE
Q psy7040         222 KPS-PPGGPLKVSNVHAEGVTLDWKVP--DDDGGQPIEKYVVDKMDEATGR--WTPAGETEGPVTGLEVEGLIPNHKYKF  296 (716)
Q Consensus       222 ~p~-~p~~~~~~~~~~~~~~~l~W~~p--~~~~~~~~~~y~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~~~y~~  296 (716)
                      .|. +|.+ +.+.....+++.|+|++|  ...++ .+.+|.|+++..+...  +............+.|.+|.+++.|.|
T Consensus        17 ~P~~~P~~-l~~~~~~~~sv~l~W~~p~~~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   94 (134)
T 2edx_A           17 TPSAPPQK-VMCVSMGSTTVRVSWVPPPADSRNG-VITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRV   94 (134)
T ss_dssp             CCSSCSEE-EEEECSSSSEEEEEEECCCSTTCSS-CEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEESCCTTCEEEE
T ss_pred             CCCCCCcc-cEEEeCCCCEEEEEecCCCccCCCC-ceeEEEEEEEECCCCCcccEEEEeeCCCccEEEeCCCCCCCEEEE
Confidence            344 5555 777777888999999988  44444 6899999998765432  233332235678999999999999999


Q ss_pred             EEEEEcCCCCCCCCcccceEEecCCCCCC-CCCCCcEEEee
Q psy7040         297 RVRAVNKQGKSEPLTTTASIEAKNPFNQP-GKPGTPEIKDF  336 (716)
Q Consensus       297 ~v~a~n~~g~~~~~~~~~~~~~~~~~~~p-~~p~~~~~~~~  336 (716)
                      +|+|.|..|.+..+...   .+.+....| .+|.++++...
T Consensus        95 ~V~A~n~~G~g~~S~~~---~~~T~~~~P~~~P~~l~~~~~  132 (134)
T 2edx_A           95 WVRAHTDVGPGPESSPV---LVRTDEDVPSGPPRKVESGPS  132 (134)
T ss_dssp             EEEEEETTBCCCCCCCE---EEECCCCSSCCCCCCCCCCCC
T ss_pred             EEEEEcCCCcCCCCCCE---EeecCCCCCCCCCceeEEEEc
Confidence            99999999988776553   344455667 68888876543

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.09  E-value=9.1e-10  Score=87.24  Aligned_cols=86  Identities=21%  Similarity=0.310  Sum_probs=67.1

Q ss_pred             CCCCceEEEEeCCeEEEEe--cCCCCCCCCccceEEEEEEcC-CCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          57 PEGPLEVSNIHKDGCTLKW--NKPKDDGGEPLEGYLVEKYDP-ETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W--~~p~~~~~~~i~~y~v~~~~~-~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      ++..|++..++.++|.|+|  .+|...+|.  .+|+|+|+.. +...|..    ....++|.+|.|++.|.|+|+|.|..
T Consensus        12 ~p~~l~~~~~~~~sv~l~W~~~~P~~~ng~--~~Y~v~y~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~f~V~A~~~~   85 (107)
T 1x5a_A           12 SGLSLKLVKKEPRQLELTWAGSRPRNPGGN--LSYELHVLNQDEEWHQMV----LEPRVLLTKLQPDTTYIVRVRTLTPL   85 (107)
T ss_dssp             CSCCCCEEEEETTEEEEECCCCCSSCCSSC--CEEEEEEECSSCEEEEEE----SSSEEEEESCCSSCEEEEEEEEECSS
T ss_pred             CCCceEEEecCCCEEEEEECCCCCCCCCCc--eEEEEEEEeCCCCceEEE----ecceEEECCCCCCCEEEEEEEEECCC
Confidence            4456889999999999999  888765554  8999999875 2222222    12449999999999999999999999


Q ss_pred             ccCCCccccceEEec
Q psy7040         134 GESEPLETFSSIIAR  148 (716)
Q Consensus       134 g~~~~s~~~~~~~~~  148 (716)
                      |.+.+|......+..
T Consensus        86 G~g~~S~~~~~~T~~  100 (107)
T 1x5a_A           86 GPGPFSPDHEFRTSP  100 (107)
T ss_dssp             SCCCCCCCEEEECCC
T ss_pred             ccCCCCCCEEEEECC
Confidence            999988877665543

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=5.4e-10  Score=91.05  Aligned_cols=94  Identities=16%  Similarity=0.187  Sum_probs=69.9

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCC---ccceEEEEEEcCCC--CcEEEecccCCCeEEecCCCCCcEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGE---PLEGYLVEKYDPET--GVWIPVGKTREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~---~i~~y~v~~~~~~~--~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      +.||..|++...+.++|.|+|++|...++.   .+.+|+|+|+..+.  ..+..+ ....++++|.||+|++.|.|+|+|
T Consensus        19 p~~P~~l~~~~~s~tsi~lsW~~p~~~~~~i~~~~~~Y~v~y~~~~~~~~~~~~~-~~~~~~~~v~gL~P~T~Y~f~V~A   97 (123)
T 2edd_A           19 MLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSE-DTTSLSYTATGLKPNTMYEFSVMV   97 (123)
T ss_dssp             SCCCEEEEEEEEETTEEEEEEECSSSCSSCCCSCCCCEEEEEEETTCTTCCCCCE-EESSSEEEEESCCTTCEEEEEEEE
T ss_pred             CCCCcceEEEEcCCCeEEEEecCCCCCcccccCcCceEEEEEEECCCCCccEEEE-eCCceEEEecCCCCCCEEEEEEEE
Confidence            345555788899999999999987644332   23499999987532  223222 123589999999999999999999


Q ss_pred             EecCccCCCccccceEEecC
Q psy7040         130 LNKEGESEPLETFSSIIARD  149 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~~~~~  149 (716)
                      .|..|.+.+|......+...
T Consensus        98 ~n~~g~g~~S~~v~~~T~~~  117 (123)
T 2edd_A           98 TKNRRSSTWSMTAHATTYEA  117 (123)
T ss_dssp             CCSSSCCCCCCCEEEECCCS
T ss_pred             eCCCcccCCCCCEEEEccCC
Confidence            99999999998776666544

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.08  E-value=5.2e-10  Score=117.66  Aligned_cols=97  Identities=37%  Similarity=0.705  Sum_probs=87.5

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      ..|++|..+.+..++.++++|+|.+|..++|++|++|.|+++..++..|..+...  ..+.+++.+|.+|..|.|||+|.
T Consensus         8 ~~P~pP~~P~v~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~~W~~v~~~--~~t~~~V~~L~~g~~Y~FRV~A~   85 (573)
T 3uto_A            8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS--RYTYTTIEGLRAGKQYEFRIIAE   85 (573)
T ss_dssp             CCCCCCEEEEEEEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSCCCEEEEEE--SSSEEEECCCCTTCEEEEEEEEE
T ss_pred             CCCccCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeccc--cCCEEEeCCCCCCCcEeEEEEEE
Confidence            4688899999999999999999999999999999999999999998999988754  56889999999999999999999


Q ss_pred             eCCCCCCCCCCCCceEeec
Q psy7040         403 NKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       403 n~~g~~~~s~~~~~~~~~~  421 (716)
                      |..|.|++|.++..+....
T Consensus        86 N~~G~s~PS~~s~~v~~~~  104 (573)
T 3uto_A           86 NKHGQSKPCEPTAPVLIPG  104 (573)
T ss_dssp             ETTEECCCCCCCCCEECC-
T ss_pred             cCceEcCCcCCCCCEEcCC
Confidence            9999999998887776543

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=3.4e-10  Score=92.96  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             CCCceEE-EEeCCeEEEEecCC--CCCCCCccceEEEEEEcCCC---CcEEEecccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          58 EGPLEVS-NIHKDGCTLKWNKP--KDDGGEPLEGYLVEKYDPET---GVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        58 ~~~l~~~-~~~~~s~~l~W~~p--~~~~~~~i~~y~v~~~~~~~---~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      |.++.+. ..+.++|.|+|++|  ...+ +.|.+|+|+|+....   ..|........+.+.|.+|.+++.|.|+|+|.|
T Consensus        22 P~~~~~~~~~s~~sv~l~W~pp~~~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n  100 (124)
T 2dbj_A           22 PLNVTVFLNESSDNVDIRWMKPPTKQQD-GELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVT  100 (124)
T ss_dssp             CEEEEEEECSSSSEEEEEEECCSCCSTT-CCEEEEEEEEEEEETTEEEEEEEEEESTTSCEEEECCCSSSEEEECEEEEE
T ss_pred             CcceEEEecCCCCEEEEEEcCCCcccCC-CeEeEEEEEEEECCCCCccceEEEeCCCcceEEecCCCCCCEEEEEEEEEC
Confidence            3345555 46788999999998  4334 469999999964322   345443344458999999999999999999999


Q ss_pred             cCccCCCccccceEEec
Q psy7040         132 KEGESEPLETFSSIIAR  148 (716)
Q Consensus       132 ~~g~~~~s~~~~~~~~~  148 (716)
                      ..|.+.+|......+..
T Consensus       101 ~~G~Gp~S~~~~~~T~~  117 (124)
T 2dbj_A          101 RGGVGPFSDPVKIFIPA  117 (124)
T ss_dssp             SSCBCCCCCCEEEECCC
T ss_pred             CCccCCCCCCEEEEcCC
Confidence            99999988877666653

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.08  E-value=1.6e-10  Score=93.70  Aligned_cols=90  Identities=18%  Similarity=0.269  Sum_probs=71.5

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccC
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGES  136 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~  136 (716)
                      ++..+++...+.+++.|+|++|..  + .+.+|+|+|+..+...|........+.+.|.+|.+++.|.|+|+|.|..|.+
T Consensus        20 ~P~~l~~~~~~~~sv~l~W~~p~~--~-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g   96 (115)
T 1x5z_A           20 QPLNFKAEPESETSILLSWTPPRS--D-TIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLG   96 (115)
T ss_dssp             CCEEEEEECSSSSEEEEEEECCSC--C-CCCEEEECBEESSSCCCBCCEECSSSEEEEECCCTTCEEEECEEEECSSCEE
T ss_pred             CCccCEeeeCCCCEEEEEEcCCCC--C-CccEEEEEEEeCCCCCceEEecCCCcEEEECCCCCCCeEEEEEEEECCCccc
Confidence            344466777788999999999863  3 6999999998877666544433445899999999999999999999999999


Q ss_pred             CCccccceEEecC
Q psy7040         137 EPLETFSSIIARD  149 (716)
Q Consensus       137 ~~s~~~~~~~~~~  149 (716)
                      .++......+...
T Consensus        97 ~~S~~~~~~T~~~  109 (115)
T 1x5z_A           97 ASTAEISARTMQS  109 (115)
T ss_dssp             EECCCEEEECCCC
T ss_pred             CCCcCEEEecCCC
Confidence            8887776665543

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=2.7e-10  Score=90.26  Aligned_cols=92  Identities=21%  Similarity=0.304  Sum_probs=74.2

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCC-CCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPE-QNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~-~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      .+|.+|.++.+...+.+++.|+|.+|. ...++.+.+|.|+++..+...+...   ......+.|.+|.+++.|.|+|+|
T Consensus         7 ~pp~~P~~l~~~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~~V~A   83 (103)
T 2edy_A            7 GPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQN---ITTDTRFTLTGLKPDTTYDIKVRA   83 (103)
T ss_dssp             CCSCCCEEEECSSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSCCEEEE---EESSSCCEECSCCTTCCEEEECCE
T ss_pred             CCCCCCeeeEEEecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCCccEEE---cCCcceEEEcCCCCCCEEEEEEEE
Confidence            456688899998889999999999973 2334479999999998765444432   346788999999999999999999


Q ss_pred             EeCCCCCCCCCCCCce
Q psy7040         402 VNKGGPGEPSDPTAPH  417 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~  417 (716)
                      .|..|.|.+|......
T Consensus        84 ~n~~G~g~~S~~~~~~   99 (103)
T 2edy_A           84 WTSKGSGPLSPSIQSR   99 (103)
T ss_dssp             ECSSCBCCCCCCCCCC
T ss_pred             ECCCCCCCCCCCEEEE
Confidence            9999999888765543

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.08  E-value=7.1e-10  Score=90.61  Aligned_cols=102  Identities=21%  Similarity=0.261  Sum_probs=80.0

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCC-CC-----cc--ceEEEEEEeecCC-CceEEEeeecCCCCeEEecCCCCCCe
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQN-GG-----SP--IVGYIIEKKEKYS-PIWEKCAQTEGDTPKGKVLDLIEGNQ  394 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~-~~-----~~--i~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~  394 (716)
                      .|.....+.+..++.+++.|+|.+|... ++     +.  +..|.|.|...+. ..+...  ..+..++++|.+|+|++.
T Consensus        17 ~~s~v~~p~v~~i~s~S~~LsW~~P~~~~~g~~~~~g~~~i~~Yev~~~~k~~~~~~~~~--~~g~~ts~~v~~L~P~T~   94 (137)
T 1wk0_A           17 LLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSV--YVGEETNITLNDLKPAMD   94 (137)
T ss_dssp             HTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEE--EEESCSEEEECSCCTTCE
T ss_pred             ccCCCCCcEEEEEccCEEEEEECCCCCccCccccccccCccEEEEEEEEecCCCCceEEE--EecCccEEEEcCCCCCCE
Confidence            4666778889999999999999998765 33     22  6899999976542 223222  346779999999999999


Q ss_pred             EEEEEEEEeCCCCCCCCCCCCceEeecCCCCCc
Q psy7040         395 YEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY  427 (716)
Q Consensus       395 Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~  427 (716)
                      |.|+|+|.|..|.|.+|....+.+....+.+|.
T Consensus        95 Y~~rV~A~n~~G~G~~S~~~~f~T~~~~P~~P~  127 (137)
T 1wk0_A           95 YHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPN  127 (137)
T ss_dssp             ECEEEEEEETTEECCCCCCCCEECCCSSSCCCS
T ss_pred             EEEEEEEEeCCCcCCCCCCEEEECCCCCCCCCC
Confidence            999999999999999999988887766555554

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.07  E-value=1.4e-09  Score=97.96  Aligned_cols=133  Identities=24%  Similarity=0.383  Sum_probs=106.1

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEE
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE  459 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~  459 (716)
                      ....+.|.++...+.+.|+|.+.|..|....+   ..........+|.+. ..+....+..|..+.|.|.+.+.|.+.+.
T Consensus        61 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~---~~l~v~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~v~  136 (194)
T 2a38_A           61 GRAKLTIPAVTKANSGRYSLKATNGSGQATST---AELLVKAETAPPNFV-QRLQSMTVRQGSQVRLQVRVTGIPTPVVK  136 (194)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEE---EEEEEECCCEEEEEE-ECCCCEEECTTEEEEEEEEEEEESCCEEE
T ss_pred             CEEEEEECCCCcccCEEEEEEEEcCCceEeEE---EEEEEccCCCCCEEE-eCCccEEEcCCCEEEEEEEEEEecCCeEE
Confidence            34578999999999999999999987753221   112222222344443 22346778999999999999999999999


Q ss_pred             EEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         460 WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       460 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      |++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|....++.+.|
T Consensus       137 W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          137 FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            999999998888888888777889999999999999999999999999888877765

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A

Probab=99.07  E-value=6.4e-10  Score=87.66  Aligned_cols=83  Identities=18%  Similarity=0.319  Sum_probs=68.3

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC-CCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .|.+|.++.+..++.+++.|+|.+|.    +.+.+|.|.|.... ...+.. ........++.|.+|.|++.|.|+|+|.
T Consensus         2 ~p~~P~~l~v~~~t~~sv~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~-~~v~~~~~~~~l~~L~p~t~Y~~~V~A~   76 (104)
T 2rb8_A            2 RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTT-IDLTEDENQYSIGNLKPDTEYEVSLISR   76 (104)
T ss_dssp             CCCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTTCCEE-EEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCccEEEEecCCeEEEEEcCCC----CccceEEEEEEECcCCCceEE-EEcCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            47789999999999999999999874    36899999997754 233433 3356778899999999999999999999


Q ss_pred             eCCCCCCCC
Q psy7040         403 NKGGPGEPS  411 (716)
Q Consensus       403 n~~g~~~~s  411 (716)
                      |..|.|.++
T Consensus        77 ~~~g~s~p~   85 (104)
T 2rb8_A           77 RGDMSSNPA   85 (104)
T ss_dssp             ETTEECCCE
T ss_pred             eCCccCCCE
Confidence            999987653

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.07  E-value=7.2e-10  Score=87.77  Aligned_cols=82  Identities=13%  Similarity=0.259  Sum_probs=63.9

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC----------cEEEecccCCCeEEecCCCCCcEEEE
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG----------VWIPVGKTREPEMDVTGLTPGHEYKF  125 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~----------~~~~~~~~~~~~~~i~~L~~~~~y~~  125 (716)
                      +++..|++.+++.++|.|+|++|.    ..+++|+|.|....+.          ..........++++|.||.|++.|.|
T Consensus        10 p~p~~L~v~~~T~~Si~LsW~~p~----g~v~~Y~i~y~~~~~~~~e~~~~~~~~~~~~v~~~~t~~~l~gL~PgT~Y~~   85 (112)
T 2cui_A           10 PRLSQLSVTDVTTSSLRLNWEAPP----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSL   85 (112)
T ss_dssp             CCCCCCEEESCCSSCEEEECCCCT----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCEEEE
T ss_pred             CCCCceEEEeecCCeEEEEECCCC----CCccEEEEEEEeCCCCccccccccCcceEEEcCCCcCEEEeCCCCCCCEEEE
Confidence            455779999999999999999874    3499999999876542          11222234458999999999999999


Q ss_pred             EEEEEecCccCCCccc
Q psy7040         126 RVKALNKEGESEPLET  141 (716)
Q Consensus       126 ~v~a~~~~g~~~~s~~  141 (716)
                      +|+|.+..+.+.+...
T Consensus        86 ~V~A~~~~~~s~p~~~  101 (112)
T 2cui_A           86 TLYGLRGPHKADSIQG  101 (112)
T ss_dssp             EEEEECSSSEEEEEEE
T ss_pred             EEEEEECCcccCCEEE
Confidence            9999998877765544

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.07  E-value=1.3e-09  Score=89.16  Aligned_cols=93  Identities=22%  Similarity=0.240  Sum_probs=74.5

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCC-CC-----Cc--cceEEEEEEcCC-CCcEEEecccCCCeEEecCCCCCcEEEEEE
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDD-GG-----EP--LEGYLVEKYDPE-TGVWIPVGKTREPEMDVTGLTPGHEYKFRV  127 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~-~~-----~~--i~~y~v~~~~~~-~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v  127 (716)
                      +...+++..++.+++.|+|.+|... +|     ..  +..|.|+|+..+ .+.+..+..+..++++|.||+|++.|.|+|
T Consensus        20 ~v~~p~v~~i~s~S~~LsW~~P~~~~~g~~~~~g~~~i~~Yev~~~~k~~~~~~~~~~~g~~ts~~v~~L~P~T~Y~~rV   99 (137)
T 1wk0_A           20 NIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKV   99 (137)
T ss_dssp             CCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESCSEEEECSCCTTCEECEEE
T ss_pred             CCCCcEEEEEccCEEEEEECCCCCccCccccccccCccEEEEEEEEecCCCCceEEEEecCccEEEEcCCCCCCEEEEEE
Confidence            3456788999999999999998764 33     12  589999997654 345555555667899999999999999999


Q ss_pred             EEEecCccCCCccccceEEecC
Q psy7040         128 KALNKEGESEPLETFSSIIARD  149 (716)
Q Consensus       128 ~a~~~~g~~~~s~~~~~~~~~~  149 (716)
                      +|.|..|.+.+|....+.+...
T Consensus       100 ~A~n~~G~G~~S~~~~f~T~~~  121 (137)
T 1wk0_A          100 QAEYNSIKGTPSEAEIFTTLSC  121 (137)
T ss_dssp             EEEETTEECCCCCCCCEECCCS
T ss_pred             EEEeCCCcCCCCCCEEEECCCC
Confidence            9999999999998888777643

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.06  E-value=7.4e-09  Score=92.03  Aligned_cols=156  Identities=16%  Similarity=0.164  Sum_probs=108.4

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCC--eEEEEECCCCCCCceeEEEEEEcCCCc-ee
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK--STKLKVFDSKRGDSGIYTLAVKNSWGT-DK  509 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~l~i~~l~~~~~~~y~~~a~n~~g~-~~  509 (716)
                      +..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.......+.....  ...|.|.++...|.|.|+|.+.|..|. .+
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   88 (182)
T 1rhf_A            9 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   88 (182)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEE
Confidence            446789999999999999999999999999999887766655554432  468999999999999999999998775 33


Q ss_pred             eEEEEEEE-EEEEEEeCC---CCCCCCceeeEEEEEEecCCCce-eeeEEEccceeeeeccccceeEEEEcCCCCCCeEE
Q psy7040         510 GTAKVTVL-GCSLKWNPP---EDDGGAPIEYYMVEKMETDTGKV-LIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQ  584 (716)
Q Consensus       510 ~s~~~~v~-~v~l~W~~p---~~~~~~~i~~y~v~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~  584 (716)
                      ....+.+. ...+.-.+.   ...+......|.+    .+.+.+ .+.|++.+........  ....+.|.+++  +.+.
T Consensus        89 ~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~----~g~p~p~~v~W~~~~~~~~~~~~--~~~~L~i~~~~--d~G~  160 (182)
T 1rhf_A           89 QPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA----VGPPEPVTIVWWRGTTKIGGPAP--SPSVLNVTGVT--QSTM  160 (182)
T ss_dssp             CCEEEEEECSCEEEECCCCEEECTTCCEEEEEEE----ECSSSCCEEEEEETTEECSCSEE--SSEEEEECCCS--SCEE
T ss_pred             EEEEEEEecCCeEEecCcceEecCCCEEEEEeEe----cCCCCCCEEEEEcCCeECCCCCC--CceEEEEeccc--cCeE
Confidence            45556655 111111111   0112222333433    334445 6999998765432111  34788888884  6799


Q ss_pred             EEEEEEcCCCCC
Q psy7040         585 YTVTATNSQGKD  596 (716)
Q Consensus       585 ~~v~a~n~~G~~  596 (716)
                      |+|.|.|..|..
T Consensus       161 Y~C~a~N~~g~~  172 (182)
T 1rhf_A          161 FSCEAHNLKGLA  172 (182)
T ss_dssp             EEEEEEETTEEE
T ss_pred             EEEEEECCCCCc
Confidence            999999999865

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}

Probab=99.06  E-value=1.1e-09  Score=85.57  Aligned_cols=82  Identities=21%  Similarity=0.359  Sum_probs=67.6

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      +.+|.++.+...+.+++.|+|.+|.    +.+.+|.|+|+..+...+...........++.|.+|.|++.|.|+|+|.|.
T Consensus         2 ~~~P~~l~v~~~~~~sv~l~W~~p~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   77 (98)
T 3teu_A            2 LDAPTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALKD   77 (98)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTSCSCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCceEEEEecCCEEEEEEeCCC----CcccEEEEEEEECCCCCceEEEEcCCCcCEEEecCCCCCCEEEEEEEEEeC
Confidence            5678899999999999999999972    468999999986553333333445578899999999999999999999999


Q ss_pred             CCCCCC
Q psy7040         405 GGPGEP  410 (716)
Q Consensus       405 ~g~~~~  410 (716)
                      .|.|.+
T Consensus        78 ~G~s~p   83 (98)
T 3teu_A           78 NQESPP   83 (98)
T ss_dssp             TEECCC
T ss_pred             CCCCCC
Confidence            998754

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.06  E-value=2e-09  Score=85.09  Aligned_cols=85  Identities=24%  Similarity=0.415  Sum_probs=77.0

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|......
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   94 (103)
T 3qp3_A           15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYA   94 (103)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEE
Confidence            45678999999999999999999999999999999888888888877888999999999999999999999999888777


Q ss_pred             EEEEE
Q psy7040         513 KVTVL  517 (716)
Q Consensus       513 ~~~v~  517 (716)
                      .+.+.
T Consensus        95 ~l~V~   99 (103)
T 3qp3_A           95 TLDVT   99 (103)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77664

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.06  E-value=5.6e-10  Score=86.36  Aligned_cols=82  Identities=21%  Similarity=0.429  Sum_probs=66.0

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  405 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~  405 (716)
                      .+|.++.+...+.+++.|+|.+|.    +.+.+|.|.|+..+...+...........++.|.+|.|++.|.|+|+|.|..
T Consensus         3 ~~P~~l~~~~~~~~si~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~   78 (94)
T 1j8k_A            3 DRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDD   78 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCS----SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSS
T ss_pred             CCCCccEEEeecCCEEEEEEcCCC----CCcceEEEEEEeCCCCCceEEecCCCCccEEEeCCCCCCCEEEEEEEEEcCC
Confidence            468899999999999999999875    3689999999876533222222234577899999999999999999999999


Q ss_pred             CCCCCC
Q psy7040         406 GPGEPS  411 (716)
Q Consensus       406 g~~~~s  411 (716)
                      |.|.++
T Consensus        79 g~s~p~   84 (94)
T 1j8k_A           79 MESQPL   84 (94)
T ss_dssp             CCCCCE
T ss_pred             CcCCCE
Confidence            887654

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}

Probab=99.05  E-value=4.6e-10  Score=90.92  Aligned_cols=86  Identities=16%  Similarity=0.140  Sum_probs=69.7

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .+|.+|.++.+...+.+++.|+|.+|..    .+.+|+|.|...+...+...........+++|.+|.|++.|.|+|+|.
T Consensus        27 tp~~~P~~l~v~~~t~~Si~lsW~~p~~----~i~~Y~V~y~~~~~~~~~~~~~v~~~~t~~~l~gL~P~t~Y~~~V~A~  102 (121)
T 2ocf_D           27 SVSDVPTKLEVVAATPTSLLISWDAPAV----TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAV  102 (121)
T ss_dssp             --CCSCEEEEEEEECSSCEEEEEECCSS----CCCEEEEEEEETTTCSCBEEEEEETTCCEEEECCCCTTCEEEEEEEEE
T ss_pred             CCCCCCCccEEEecCCCEEEEEEcCCCC----CCcEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            4578899999999999999999999753    489999999887644333333445678899999999999999999999


Q ss_pred             eCCCCCCCCC
Q psy7040         403 NKGGPGEPSD  412 (716)
Q Consensus       403 n~~g~~~~s~  412 (716)
                      |..|.|.++.
T Consensus       103 ~~~G~g~~Ss  112 (121)
T 2ocf_D          103 TGLRLMLAGS  112 (121)
T ss_dssp             CCHHHHHHSC
T ss_pred             eCCCccCCCC
Confidence            9999876654

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.05  E-value=3.1e-09  Score=85.76  Aligned_cols=92  Identities=29%  Similarity=0.446  Sum_probs=79.6

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +|.|. ..+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++...|.|.|+|.|.|.
T Consensus         7 pp~i~-~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A            7 GPQII-QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCEES-CCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCEEE-eCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence            45444 34567889999999999999999999999999999988888888887777889999999999999999999999


Q ss_pred             CCceeeEEEEEEE
Q psy7040         505 WGTDKGTAKVTVL  517 (716)
Q Consensus       505 ~g~~~~s~~~~v~  517 (716)
                      .|.....+.+.+.
T Consensus        86 ~g~~~~~~~l~V~   98 (114)
T 2cqv_A           86 LGSRQAQVNLTVV   98 (114)
T ss_dssp             SCEEECCEEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            9987777666655

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.05  E-value=7.6e-10  Score=91.26  Aligned_cols=92  Identities=16%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCC-CCCCccceEEEEEEcCCCCcE---------EEecccCCCeEEecCCCCCcEEEE
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKD-DGGEPLEGYLVEKYDPETGVW---------IPVGKTREPEMDVTGLTPGHEYKF  125 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~-~~~~~i~~y~v~~~~~~~~~~---------~~~~~~~~~~~~i~~L~~~~~y~~  125 (716)
                      .||..+++..++.+++.|+|++|.. ..++.|.+|+|+|+..+...+         ........+++.|.+|.|++.|.|
T Consensus        16 ~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   95 (125)
T 1uen_A           16 VAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTL   95 (125)
T ss_dssp             CCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCEEEE
T ss_pred             CCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEecCCccEEEeCCCCCCCEEEE
Confidence            4566788999999999999999852 123459999999986654322         122233458999999999999999


Q ss_pred             EEEEEecCccCCCccccceEEe
Q psy7040         126 RVKALNKEGESEPLETFSSIIA  147 (716)
Q Consensus       126 ~v~a~~~~g~~~~s~~~~~~~~  147 (716)
                      +|+|.|..|.+.+|......+.
T Consensus        96 ~V~A~n~~G~g~~S~~~~~~T~  117 (125)
T 1uen_A           96 NVRVVNGKGEGPASPDRVFNTP  117 (125)
T ss_dssp             EEEEEESSCEEEECCCEEEECC
T ss_pred             EEEEecCCCCCCCCCCEEEECC
Confidence            9999999999888876655554

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.05  E-value=3.3e-09  Score=97.10  Aligned_cols=135  Identities=17%  Similarity=0.291  Sum_probs=103.4

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEee-----------------cCCCCCcccccccccEEEecCC
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR-----------------AKKVSPYINRDQLSDIKVRAGS  442 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~-----------------~~~~~P~~~~~~~~~~~~~~g~  442 (716)
                      ....+.|.++...+.+.|+|.|.|..|....+.   .....                 .....|.+....+....+..|.
T Consensus        57 ~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~---~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~  133 (212)
T 2r15_A           57 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV---DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK  133 (212)
T ss_dssp             TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE---EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTC
T ss_pred             CEEEEEECCCCcccCEEEEEEEecCCcceEEEE---EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCC
Confidence            345689999999999999999999765432111   00000                 0011333333445567899999


Q ss_pred             eEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         443 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       443 ~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .+.|.|.+.+.|.+.+.|++++..+....++.+... +....|.|.++...|.|.|+|.|.|..|....+..+.+.
T Consensus       134 ~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          134 ALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             CEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            999999999999999999999999988888777665 667899999999999999999999999988777766653

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.05  E-value=8.5e-10  Score=91.65  Aligned_cols=91  Identities=21%  Similarity=0.316  Sum_probs=70.8

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC--cEE-EecccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG--VWI-PVGKTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~--~~~-~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      .+|..+.+...+.+++.|+|++|...+| .|.+|+|+|+..+..  .+. .......+++.|.+|.+++.|.|+|+|.|.
T Consensus        29 ~~P~~l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~  107 (130)
T 1wfo_A           29 GPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTR  107 (130)
T ss_dssp             CCCCCCEEEEECSSEEEEECCCCSCCCS-CCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSSEEEEEEEEECS
T ss_pred             CCCCceEEEecCCCEEEEEEcCCCCCCC-ceEEEEEEEEECCCCCceEEEEEeCCCceEEEEcCCCCCCEEEEEEEEEeC
Confidence            4566688999999999999999975444 599999999876543  222 223344589999999999999999999999


Q ss_pred             CccCCCccccceEEe
Q psy7040         133 EGESEPLETFSSIIA  147 (716)
Q Consensus       133 ~g~~~~s~~~~~~~~  147 (716)
                      .|.+.++......+.
T Consensus       108 ~G~g~~S~~~~~~T~  122 (130)
T 1wfo_A          108 KGWGEAAEALVVTTE  122 (130)
T ss_dssp             SCEEEEEEEEEECCS
T ss_pred             CcCCCCcccEEEecC
Confidence            999988766554443

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.05  E-value=5.5e-10  Score=93.15  Aligned_cols=109  Identities=18%  Similarity=0.287  Sum_probs=79.6

Q ss_pred             CCC-CCCCCeEEeEEeCCeEEEEEECCCCC-CCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEE
Q psy7040         222 KPS-PPGGPLKVSNVHAEGVTLDWKVPDDD-GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVR  299 (716)
Q Consensus       222 ~p~-~p~~~~~~~~~~~~~~~l~W~~p~~~-~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~  299 (716)
                      .|. +|.+ +.+.....+++.|+|++|... .+..+.+|.|+++......|............+.|.+|.|++.|.|+|+
T Consensus        17 ~P~~~P~~-l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   95 (132)
T 1x5h_A           17 VPSAAPQN-LSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVA   95 (132)
T ss_dssp             SCCCCCEE-EEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEECE
T ss_pred             CCCCCCee-eEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCccEEEEeCCCccEEEeCCCCCCCEEEEEEE
Confidence            444 5555 777778889999999988752 2336899999998876555554433446778999999999999999999


Q ss_pred             EEcCCCCCCCCcccceEEecC---CCCCCCCCCCc
Q psy7040         300 AVNKQGKSEPLTTTASIEAKN---PFNQPGKPGTP  331 (716)
Q Consensus       300 a~n~~g~~~~~~~~~~~~~~~---~~~~p~~p~~~  331 (716)
                      |.|..|.+.++......+...   +..+|.+|.++
T Consensus        96 A~n~~G~g~~S~~~~~~T~~~~~~~~~~P~~P~~l  130 (132)
T 1x5h_A           96 ALTINGTGPATDWLSAETFESDLDETRVPEVSGPS  130 (132)
T ss_dssp             EEETTEEEEECCCEEEECCSSCCCCCCCCCCCCCC
T ss_pred             EEcCCccCCCCcCEEeEcCcccCCcccCCCCCCCC
Confidence            999999887776643333221   12467777665

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}

Probab=99.05  E-value=1.3e-09  Score=85.15  Aligned_cols=82  Identities=32%  Similarity=0.517  Sum_probs=65.7

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC-CcEEEec-ccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWIPVG-KTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +.||.++.+..++.+++.|+|.+|.    .++.+|.|+|+...+ +.+.... ....+++.|.+|.|++.|.|+|+|.|.
T Consensus         2 ~~~P~~l~v~~~~~~sv~l~W~~p~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   77 (98)
T 3teu_A            2 LDAPTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALKD   77 (98)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTSCSCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCceEEEEecCCEEEEEEeCCC----CcccEEEEEEEECCCCCceEEEEcCCCcCEEEecCCCCCCEEEEEEEEEeC
Confidence            4577778889999999999999983    459999999985443 3443333 234589999999999999999999999


Q ss_pred             CccCCCcc
Q psy7040         133 EGESEPLE  140 (716)
Q Consensus       133 ~g~~~~s~  140 (716)
                      .|.|.+..
T Consensus        78 ~G~s~p~~   85 (98)
T 3teu_A           78 NQESPPLV   85 (98)
T ss_dssp             TEECCCEE
T ss_pred             CCCCCCeE
Confidence            99887653

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.04  E-value=6.8e-10  Score=100.36  Aligned_cols=52  Identities=10%  Similarity=-0.042  Sum_probs=35.9

Q ss_pred             eccCcee---eEEEEeCCeEeeecc--------cceeeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         638 SLMPISL---ESQYLMNDKRVTIDN--------VDYFTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~~--------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                      |.|.+.+   .+.|+++|..+....        ......|.|.++...|+|.|+|.|.|..+.
T Consensus       120 L~C~~~~~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~  182 (198)
T 1ugn_A          120 LQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSP  182 (198)
T ss_dssp             EEEECSSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTST
T ss_pred             EEEecCCCCcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCC
Confidence            5555554   899999998764321        112478999999999999999999998774

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.04  E-value=1e-09  Score=82.05  Aligned_cols=71  Identities=18%  Similarity=0.419  Sum_probs=65.2

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +.++.+.+|+.+.|.|.+.+ |.+.+.|++++..+..+.++.+..++....|.|.++.+.|.|.|+|.|.|.
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   73 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD   73 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE
Confidence            45788999999999999976 888999999999999999999999988899999999999999999998654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.04  E-value=6.3e-10  Score=101.68  Aligned_cols=116  Identities=20%  Similarity=0.247  Sum_probs=80.7

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCcccee--eeccCCCCCCcc---ceeeccceeEEEEEEeeEEEEeeeeccCc-e
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIE--VVVTDKPSAPEG---PIQWLLTLTDVTWEISNYLQELHSSLMPI-S  643 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~--~~v~~~p~~~~~---~~~~~~~~v~l~w~i~~y~v~~~~~~~~~-~  643 (716)
                      ..+.|.++...+.+.|+|.|.|..|....+..  +.|..+|..+..   .....+..+              .|.|.+ .
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~--------------~l~C~~~~  133 (209)
T 1nbq_A           68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRA--------------VLTCSEQD  133 (209)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCE--------------EECCCCCS
T ss_pred             cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEE--------------EEEEeCCC
Confidence            67888999999999999999998774333333  335555554431   111112222              277875 5


Q ss_pred             e----eEEEEeCCeEeeeccc-------------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceee--EEEEEe
Q psy7040         644 L----ESQYLMNDKRVTIDNV-------------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVVT  699 (716)
Q Consensus       644 ~----~~~W~~~~~~~~~~~~-------------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s--~~l~v~  699 (716)
                      +    .+.|++++..+.....             .....|.|.++...|.|.|+|.|.|..|....+  ..|.|.
T Consensus       134 ~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          134 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             CBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             CCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            5    8999999988765421             133689999999999999999999999998433  444443

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.04  E-value=6e-10  Score=89.88  Aligned_cols=83  Identities=17%  Similarity=0.276  Sum_probs=64.2

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      +.||..|++..++.+++.|+|.+|.    ..+.+|+|.|+..+............+++.|.+|.|++.|.|+|+|.+..|
T Consensus         8 p~~P~~l~~~~~t~~sv~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~v~~~~t~~~l~~L~P~t~Y~~~V~A~~~~~   83 (115)
T 2cuh_A            8 PDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPN   83 (115)
T ss_dssp             CSSCEEEECCCCSSSCEEEEEECCS----SCCSEEEEEEECSSSCCEEEEEETTCSEEEECSCCSSSEEEEEEEEEETTE
T ss_pred             CCCCcceEEEeccCCeEEEEEECCC----CCccEEEEEEEcCCCCcEEEEECCCccEEEEeCCCCCCEEEEEEEEEeCCC
Confidence            4556667777889999999999875    248999999986554333222234458999999999999999999999888


Q ss_pred             cCCCccc
Q psy7040         135 ESEPLET  141 (716)
Q Consensus       135 ~~~~s~~  141 (716)
                      .+.+...
T Consensus        84 ~s~~~~~   90 (115)
T 2cuh_A           84 LTSPASI   90 (115)
T ss_dssp             ECCCEEE
T ss_pred             cCCCEEE
Confidence            7776543

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.04  E-value=6.1e-10  Score=91.40  Aligned_cols=91  Identities=15%  Similarity=0.267  Sum_probs=69.1

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCC-CCCccceEEEEEEcCCCCcEE---Eecc---cCCCeEEecCCCCCcEEEEEEEE
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDD-GGEPLEGYLVEKYDPETGVWI---PVGK---TREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~-~~~~i~~y~v~~~~~~~~~~~---~~~~---~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      ||..+.+...+.+++.|+|++|..+ .++.+.+|+|+|+..+...|.   ....   ...+++.|.+|++++.|.|+|+|
T Consensus        18 ~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   97 (122)
T 1va9_A           18 PPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQA   97 (122)
T ss_dssp             CCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEEE
T ss_pred             CCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEEeCCCCCCCEEEEEEEE
Confidence            3445777788899999999999752 345699999999887654332   1111   12378999999999999999999


Q ss_pred             EecCccCCCccccceEEe
Q psy7040         130 LNKEGESEPLETFSSIIA  147 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~~~  147 (716)
                      .|..|.+.++......+.
T Consensus        98 ~n~~G~g~~S~~~~~~T~  115 (122)
T 1va9_A           98 FNRAGTGPSSSEINATTL  115 (122)
T ss_dssp             EETTEECCCCCCEECCCC
T ss_pred             EcCCCCCCCccCEEEEeC
Confidence            999999988876655544

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.04  E-value=3.4e-09  Score=97.18  Aligned_cols=170  Identities=19%  Similarity=0.232  Sum_probs=112.2

Q ss_pred             ccEEEecCCeEEEEEEEeccC----CCeEEEEeC----------------CeEecc-----CCcEEEEe---CCCeEEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP----IPTKEWLCN----------------DITIIS-----KDRFKIVN---DDKSTKLK  485 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p----~~~~~W~~~----------------~~~~~~-----~~~~~~~~---~~~~~~l~  485 (716)
                      ..+.+..|+.+.|.|.+.+.+    .+.+.|++.                +.....     ..++.+..   ......|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            457899999999999998877    468999983                333221     22333322   12456799


Q ss_pred             ECCCCCCCceeEEEEEEcCCCceeeEEEEEEE----EEEEEEeCCCCCCCCceeeEEEEEEe-cCCCceeeeEEEcccee
Q psy7040         486 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL----GCSLKWNPPEDDGGAPIEYYMVEKME-TDTGKVLIKWIRTNDKR  560 (716)
Q Consensus       486 i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~----~v~l~W~~p~~~~~~~i~~y~v~~~~-~~~~~~~~~w~~~~~~~  560 (716)
                      |.++...|.|.|+|.|.|..|.......+.+.    ...+.-......+...    .+.... ...+.+.+.|++.+...
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v----~l~C~~~~g~p~~~v~W~~~~~~~  163 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDF----KLKCEPKEGSLPLQFEWQKLSDSQ  163 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCE----EEEEECSBCCSSCEEEEEECSTTC
T ss_pred             EccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcE----EEEecCCCCCCCCEEEEEECCCCC
Confidence            99999999999999999999888777777776    1111111122222222    233332 33445669999954322


Q ss_pred             e--ee-ccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCC
Q psy7040         561 V--TI-DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  607 (716)
Q Consensus       561 ~--~~-~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~  607 (716)
                      .  .. ........+.|.++...+.+.|+|.|.|..|....+..+.|..|
T Consensus       164 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          164 TMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             CCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             ccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            1  11 11223468999999999999999999999998766666666544

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.1e-09  Score=86.16  Aligned_cols=86  Identities=14%  Similarity=0.171  Sum_probs=70.3

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .++.+|.++.+..++.+++.|+|.+|.    +.+.+|+|.|+..++..+. .........++.|.+|.|++.|.|+|.|+
T Consensus         6 ~p~~pP~~l~~~~vt~tsi~vsW~pp~----~~i~~Y~I~y~~~~~~~~~-~~~v~~~~t~~~l~~L~p~T~Y~v~V~A~   80 (108)
T 2ee3_A            6 SGLAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSG-QTEAPGNATSAMLGPLSSSTTYTVRVTCL   80 (108)
T ss_dssp             CCCCCSSCEEEESCCSSCEEEEESCCS----SCCSEEEEEEEETTTCCBC-CEEEETTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             cCCCCCceEEEEEccCCeEEEEeeCCC----CCccEEEEEEEeCCCCcee-EEEcCCCcCEEEcCCCCCCCEEEEEEEEE
Confidence            346789999999999999999999863    3699999999877643332 23345677899999999999999999999


Q ss_pred             eCCCCCCCCCC
Q psy7040         403 NKGGPGEPSDP  413 (716)
Q Consensus       403 n~~g~~~~s~~  413 (716)
                      |..|.|.++..
T Consensus        81 ~~~g~s~p~~~   91 (108)
T 2ee3_A           81 YPGGGSSTLTG   91 (108)
T ss_dssp             CTTSCEEEEEE
T ss_pred             eCCCcCCCccC
Confidence            99998876643

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.03  E-value=1.7e-07  Score=98.18  Aligned_cols=119  Identities=14%  Similarity=0.031  Sum_probs=71.4

Q ss_pred             eEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecC--CCCCcccccccccEEEecCCeEE-EEEEEeccCCC--e
Q psy7040         383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK--KVSPYINRDQLSDIKVRAGSNFE-FDINVIGEPIP--T  457 (716)
Q Consensus       383 ~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~--~~~P~~~~~~~~~~~~~~g~~~~-~~~~v~~~p~~--~  457 (716)
                      .+.|..........|.|.|.|..+... .. . .......  ..+|.+.......    .|..+. |.|.+.+.+++  .
T Consensus       362 ~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~-~-~~~~~~~~~~~~p~v~~~~~~~----~~~~~~~L~C~~~g~~P~~i~  434 (512)
T 1zvo_C          362 RLTLPRSLWNAGTSVTCTLNHPSLPPQ-RL-M-ALREPAAQAPVKLSLNLLASSD----PPEAASWLLCEVSGFSPPNIL  434 (512)
T ss_pred             EEEEchHHhcCCCeEEEEEEeCCCCCC-ce-e-EEeecCCCCCCCCEEEEEccCc----CCCCceEEEEEEeeeCCCCcE
Confidence            356666665666788999999876543 11 1 1111111  2345543221111    677888 99999986543  5


Q ss_pred             EEEEeCCeEeccCCcE--EEEeCCCe------EEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         458 KEWLCNDITIISKDRF--KIVNDDKS------TKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       458 ~~W~~~~~~~~~~~~~--~~~~~~~~------~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      +.|++++..+......  .+......      ..|.|.....++.+.|+|.|.|.....
T Consensus       435 v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~  493 (512)
T 1zvo_C          435 LMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRT  493 (512)
T ss_pred             EEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCC
Confidence            8999999988653211  11112111      346666666667999999999987654

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=3.4e-10  Score=92.76  Aligned_cols=91  Identities=15%  Similarity=0.304  Sum_probs=69.5

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC---cEEEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG---VWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~---~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      ||.++++..++.+++.|+|++|...+ ..|.+|.|+|+..+..   .|........+++.|.+|.+++.|.|+|+|.|..
T Consensus        21 ~P~~l~~~~~~~~sv~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   99 (121)
T 2dlh_A           21 APRDVQARMLSSTTILVQWKEPEEPN-GQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSI   99 (121)
T ss_dssp             CCEEEEECCCSSSBCCEEEECCSCCC-SCEEEEEEECCSCTTSCTTTSCCCCCSSCSEECCBSCCSSCEEEEEEEEEESS
T ss_pred             CCcccEEEecCCCEEEEEECCCCCCC-CcEeEEEEEEEeCCCCCccccEEEecCCceEEEecCCCCCCEEEEEEEEEeCC
Confidence            34446666778899999999986444 4599999999866432   3333333445789999999999999999999999


Q ss_pred             ccCCCccccceEEec
Q psy7040         134 GESEPLETFSSIIAR  148 (716)
Q Consensus       134 g~~~~s~~~~~~~~~  148 (716)
                      |.+.++......+..
T Consensus       100 G~g~~S~~~~~~T~~  114 (121)
T 2dlh_A          100 GDGPLSSDIQVITQT  114 (121)
T ss_dssp             CBCCCCCCEEEECCC
T ss_pred             ccCCCCCCEEEECCC
Confidence            999888766655543

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=2.7e-10  Score=90.24  Aligned_cols=86  Identities=21%  Similarity=0.346  Sum_probs=67.0

Q ss_pred             CCCceEEEEeCCeEEEEecCCC-CCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccC
Q psy7040          58 EGPLEVSNIHKDGCTLKWNKPK-DDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGES  136 (716)
Q Consensus        58 ~~~l~~~~~~~~s~~l~W~~p~-~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~  136 (716)
                      |..+.+...+.+++.|+|++|. ...++.+.+|.|+|+..+...+.... ...+++.|.+|.|++.|.|+|+|.|..|.+
T Consensus        12 P~~l~~~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g   90 (103)
T 2edy_A           12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNI-TTDTRFTLTGLKPDTTYDIKVRAWTSKGSG   90 (103)
T ss_dssp             CEEEECSSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSCCEEEEE-ESSSCCEECSCCTTCCEEEECCEECSSCBC
T ss_pred             CeeeEEEecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCCccEEEc-CCcceEEEcCCCCCCEEEEEEEEECCCCCC
Confidence            3345566778899999999983 12334699999999887766555443 345889999999999999999999999999


Q ss_pred             CCccccce
Q psy7040         137 EPLETFSS  144 (716)
Q Consensus       137 ~~s~~~~~  144 (716)
                      .+|.....
T Consensus        91 ~~S~~~~~   98 (103)
T 2edy_A           91 PLSPSIQS   98 (103)
T ss_dssp             CCCCCCCC
T ss_pred             CCCCCEEE
Confidence            88866544

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.02  E-value=4.4e-09  Score=94.96  Aligned_cols=131  Identities=21%  Similarity=0.338  Sum_probs=102.5

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccc--cccccEEEecCCeEEEEEEEeccCCCeE
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR--DQLSDIKVRAGSNFEFDINVIGEPIPTK  458 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~--~~~~~~~~~~g~~~~~~~~v~~~p~~~~  458 (716)
                      ...+.|.++...+.+.|+|.|.|..|....+..   .....   +|.+..  .......+..|..+.|.|.+.+.|.+.+
T Consensus        62 ~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~---l~v~~---~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v  135 (197)
T 3lcy_A           62 THTLTVMTEEQEDEGVYTCIATNEVGEVETSSK---LLLQA---TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAM  135 (197)
T ss_dssp             EEEEEEECCSGGGCEEEEEEEECSSCEEEEEEE---EEEEE---EEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEE
T ss_pred             EEEEEEecCCccCCEEEEEEEECCCCceeEEEE---EEEEc---CCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCee
Confidence            347889999999999999999988765322211   11111   222221  1234567889999999999999999999


Q ss_pred             EEEeCCeEeccCCcEEEEeCCCeEEEEECCCCC-CCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         459 EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR-GDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       459 ~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~-~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .|++++..+.....+.+...+....|.|.++.. +|.|.|+|.|.|..|....+..+.+.
T Consensus       136 ~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          136 TWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             EEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            999999999888888888887778999999995 89999999999999998888777653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.02  E-value=2.8e-09  Score=94.04  Aligned_cols=60  Identities=18%  Similarity=0.194  Sum_probs=50.3

Q ss_pred             cEEEecCCeEEEEEEEeccCCCe-EEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      ...+.+|+.+.|.|.+.+.|.+. +.|++++..+..          ....|.|.++...|.|.|+|.+.|.
T Consensus        16 ~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~n~   76 (175)
T 1fnl_A           16 WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQTNLS   76 (175)
T ss_dssp             CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEECSSS
T ss_pred             ceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEeeCC
Confidence            45788999999999999988776 789999887642          2458999999999999999999763

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.02  E-value=1.6e-09  Score=99.73  Aligned_cols=116  Identities=9%  Similarity=0.015  Sum_probs=77.0

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee-ccCCCCCCcc---ceee-ccceeEEEEEEeeEEEEeeeeccCcee
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV-VTDKPSAPEG---PIQW-LLTLTDVTWEISNYLQELHSSLMPISL  644 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~-v~~~p~~~~~---~~~~-~~~~v~l~w~i~~y~v~~~~~~~~~~~  644 (716)
                      .++.|.+++..+.+.|.|.+.+..+......... +..++.....   ...+ ....+.              +.|.+.|
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~c~~~g  144 (218)
T 4frw_A           79 GSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLA--------------ASCTAEG  144 (218)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEE--------------EEEEEEE
T ss_pred             EEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccc--------------eeeeccC
Confidence            6799999999999999999998766443333222 2222211110   0111 122222              4555555


Q ss_pred             ----eEEEEeCCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         645 ----ESQYLMNDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       645 ----~~~W~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                          .+.|++++..+...       .......|.|..+..+|.|.|+|.|.|.+|..+....+.|.
T Consensus       145 ~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          145 SPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             BSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             CcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence                89999998877654       11123579999999999999999999999998766665543

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.01  E-value=1.7e-09  Score=85.33  Aligned_cols=82  Identities=20%  Similarity=0.253  Sum_probs=69.0

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      ..|.+|.++.+..++.+++.|+|.+|..    .+.+|.|.|+..+. .|... .......++.|.+|.|++.|.|+|+|.
T Consensus         6 t~p~~P~~l~v~~~~~~sv~lsW~~p~~----~i~~Y~i~y~~~~~-~~~~~-~~~~~~ts~~l~~L~p~t~Y~~~V~A~   79 (105)
T 2cum_A            6 SGLEAPRDLEAKEVTPRTALLTWTEPPV----RPAGYLLSFHTPGG-QTQEI-LLPGGITSHQLLGLFPSTSYNARLQAM   79 (105)
T ss_dssp             TTCCCCEEEEEESCCSSCEEEEEECCSS----CCSEEEEEEECTTS-CEEEE-EECSSCSEEEECSCCTTCEEEEEEEEE
T ss_pred             cCCCCCCceEEEeccCCEEEEEEcCCCC----ccceEEEEEEeCCC-ceEEE-EECCCccEEEECCCCCCCEEEEEEEEE
Confidence            5688899999999999999999998742    58999999987653 45443 356678899999999999999999999


Q ss_pred             eCCCCCCC
Q psy7040         403 NKGGPGEP  410 (716)
Q Consensus       403 n~~g~~~~  410 (716)
                      |..|.+.+
T Consensus        80 ~~~g~s~~   87 (105)
T 2cum_A           80 WGQSLLPP   87 (105)
T ss_dssp             BTTBCCCC
T ss_pred             eCCcccCC
Confidence            99887765

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.01  E-value=2.8e-09  Score=93.81  Aligned_cols=150  Identities=17%  Similarity=0.245  Sum_probs=101.0

Q ss_pred             cEEEecCCeEEEEEEEec--cCCCeEEEEeCCeEec----------cCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040         435 DIKVRAGSNFEFDINVIG--EPIPTKEWLCNDITII----------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~--~p~~~~~W~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      .+.+..|+.+.|.|....  .+.+.+.|++++..+.          ...++.+...  . +|.|.++...|.|.|+|.|.
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~--g-sL~I~~v~~~D~G~Y~C~~~   81 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN--G-DLKIKNLTRDDSGTYNVTVY   81 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT--S-CEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCC--C-cEEEcccccccCEEEEEEEE
Confidence            366788999999994333  5567899999986542          3445555222  2 49999999999999999999


Q ss_pred             cCCCce--eeEEEEEEE----EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcC
Q psy7040         503 NSWGTD--KGTAKVTVL----GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRP  576 (716)
Q Consensus       503 n~~g~~--~~s~~~~v~----~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~  576 (716)
                      |..|..  .....+.+.    ...+....     ..    ..+.....+.+.+.+.|++.+......      ..+.|..
T Consensus        82 n~~g~~~~~~~~~l~V~~~~~~p~i~~~~-----~~----v~L~C~~~g~p~p~i~W~~~g~~l~~~------~~~~i~~  146 (176)
T 1hng_A           82 STNGTRILNKALDLRILEMVSKPMIYWEC-----SN----ATLTCEVLEGTDVELKLYQGKEHLRSL------RQKTMSY  146 (176)
T ss_dssp             ETTCCEEEEEEEEEEEECCCCCCEEEEET-----TT----TEEEEECSSCSSCEEEEEETTEEEEEE------SSSEEEE
T ss_pred             eCCCCEEEEEEEEEEEeCCCCCCEEEecC-----Cc----EEEEEEecCCCCcEEEEEECCEECCCC------CcEEEEE
Confidence            999986  445555554    11222211     11    123333334445669999988765433      3355667


Q ss_pred             CCCCCeEEEEEEEEcCCCCCccceee
Q psy7040         577 LQRSDTAQYTVTATNSQGKDQVFIEV  602 (716)
Q Consensus       577 L~~~~~y~~~v~a~n~~G~~~~s~~~  602 (716)
                      +...+.+.|+|.|.|..|.......+
T Consensus       147 ~~~~d~G~Y~C~a~N~~g~~~~~~~l  172 (176)
T 1hng_A          147 QWTNLRAPFKCKAVNRVSQESEMEVV  172 (176)
T ss_dssp             ECSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             EEccCCeEEEEEEEecCCCceecccc
Confidence            78999999999999999876555443

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*

Probab=99.01  E-value=1.5e-09  Score=86.77  Aligned_cols=80  Identities=16%  Similarity=0.145  Sum_probs=65.7

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      +.|.+|.++.+...+.+++.|+|.+|.    +.+.+|.|.|+..+...+...........+++|.+|.|++.|.|+|+|.
T Consensus         2 GvP~~P~~L~v~~~t~~Sv~lsW~~p~----g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~gL~P~T~Y~v~V~A~   77 (114)
T 3qwq_B            2 GVSDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYAV   77 (114)
T ss_dssp             ---CCCEEEEEEEEETTEEEEEEECCS----CCCSEEEEEEEESSCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCCceEEEecCCCEEEEEEcCCc----CcccEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            468899999999999999999999863    3689999999987644333334456778999999999999999999999


Q ss_pred             eCCC
Q psy7040         403 NKGG  406 (716)
Q Consensus       403 n~~g  406 (716)
                      +..|
T Consensus        78 ~~~G   81 (114)
T 3qwq_B           78 TDHK   81 (114)
T ss_dssp             EEEE
T ss_pred             ECCc
Confidence            9988

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.01  E-value=3.7e-10  Score=99.52  Aligned_cols=108  Identities=15%  Similarity=0.142  Sum_probs=81.1

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCC--ccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCcee---
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKD--QVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL---  644 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~--~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~---  644 (716)
                      .++.|.++...+.+.|+|.|.|..|..  .....+.|..++..|. +.. ....+.              |.|.+.|   
T Consensus        61 gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p~-i~~-~~~~v~--------------L~C~~~g~p~  124 (176)
T 1hng_A           61 GDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPM-IYW-ECSNAT--------------LTCEVLEGTD  124 (176)
T ss_dssp             SCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCCE-EEE-ETTTTE--------------EEEECSSCSS
T ss_pred             CcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCCE-EEe-cCCcEE--------------EEEEecCCCC
Confidence            459999999999999999999998875  3334444666665565 332 222243              6666665   


Q ss_pred             -eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         645 -ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       645 -~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                       .+.|+++|..+..+     ..+.|..+..+|.|.|+|.|.|..|....+..|.+
T Consensus       125 p~i~W~~~g~~l~~~-----~~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          125 VELKLYQGKEHLRSL-----RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             CEEEEEETTEEEEEE-----SSSEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             cEEEEEECCEECCCC-----CcEEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence             89999999988765     33566688899999999999999998887776654

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*

Probab=99.01  E-value=2.4e-09  Score=85.51  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=60.5

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc-EEEe-cccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV-WIPV-GKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      .||.+|.+.+++.+++.|+|++|.    +.+.+|+|.|+..++.. .... .....++++|.||.|++.|.|+|+|.+..
T Consensus         5 ~~P~~L~v~~~t~~Sv~lsW~~p~----g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~gL~P~T~Y~v~V~A~~~~   80 (114)
T 3qwq_B            5 DVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYAVTDH   80 (114)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECCS----CCCSEEEEEEEESSCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEEEE
T ss_pred             CCCCceEEEecCCCEEEEEEcCCc----CcccEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEEECC
Confidence            466678899999999999999874    34999999998766542 1222 23345899999999999999999999998


Q ss_pred             c
Q psy7040         134 G  134 (716)
Q Consensus       134 g  134 (716)
                      |
T Consensus        81 G   81 (114)
T 3qwq_B           81 K   81 (114)
T ss_dssp             E
T ss_pred             c
Confidence            8

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.01  E-value=1.8e-09  Score=101.78  Aligned_cols=114  Identities=10%  Similarity=0.055  Sum_probs=75.8

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCcc-----ceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCcee
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQV-----FIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL  644 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~-----s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~  644 (716)
                      ..+.|.+++..+.+.|+|.|.|..+....     ...+.|..+|..+. +.......+.+.   .|-.+   .|.|.+.|
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~-~~~~~~~~~~v~---~g~~v---~L~C~~~g  162 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNN-VHVSTAEVVQVD---EGNDI---TMTCPCTD  162 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSC-CEECCCSEEECC---TTCCE---EECCCEES
T ss_pred             ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCe-EEEecCceEEec---CCCcE---EEEEEecC
Confidence            68999999999999999999998875533     33334555443333 221111111110   11112   27888877


Q ss_pred             ----eEEEEeCCeEeeecc-----------------------c-c---eeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         645 ----ESQYLMNDKRVTIDN-----------------------V-D---YFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       645 ----~~~W~~~~~~~~~~~-----------------------~-~---~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                          .+.|++++..+....                       . .   ....|.|.++...|+|.|+|.|.|.+|..
T Consensus       163 ~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          163 CANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL  239 (250)
T ss_dssp             CTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred             CCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcccc
Confidence                999999987664310                       0 0   12689999999999999999999977654

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.01  E-value=1.1e-09  Score=89.16  Aligned_cols=91  Identities=20%  Similarity=0.344  Sum_probs=71.9

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA  300 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a  300 (716)
                      +.|.+|.+ +.+.....+++.|+|.+|...+| .+.+|.|+++......+............+.|.+|.+++.|.|+|+|
T Consensus        16 ~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   93 (119)
T 1wfn_A           16 DVPGPVGH-LSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAA   93 (119)
T ss_dssp             CSCCCCSC-CEEESCCSSEEEEECCCCTTCCS-CCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEE
T ss_pred             CCCCCCCc-eEEEECCCCEEEEEEcCCCCCCC-cEEEEEEEEEECCCCCceEEEEeCCCceEEEEcCCCCCCEEEEEEEE
Confidence            46777877 78888889999999999886666 58999999987654332222222356789999999999999999999


Q ss_pred             EcCCCCCCCCccc
Q psy7040         301 VNKQGKSEPLTTT  313 (716)
Q Consensus       301 ~n~~g~~~~~~~~  313 (716)
                      .|..|.+.++...
T Consensus        94 ~n~~G~g~~S~~~  106 (119)
T 1wfn_A           94 MTSKGQGQVSAST  106 (119)
T ss_dssp             ECSSCEEEEEEEE
T ss_pred             EcCCccCCCCCCE
Confidence            9999988776654

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.00  E-value=2.1e-09  Score=97.29  Aligned_cols=158  Identities=12%  Similarity=0.121  Sum_probs=101.5

Q ss_pred             EEEecCCeEEEEEEEeccCCCe-EEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      ..+.+|+.+.|.|.+.+.|.+. +.|++++..+....          ..|.|.++...|.|.|+|.|.|...  +....+
T Consensus        17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n~~~--s~~~~l   84 (204)
T 3sgj_C           17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQLSTL--SDPVQL   84 (204)
T ss_dssp             SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETTSBC--CCCEEE
T ss_pred             eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCCCcc--cccEEE
Confidence            6789999999999999988776 99999998775432          5899999999999999999998543  334444


Q ss_pred             EEEEEEEEEeCCC---CCCCCceeeEEEEEEecCC-CceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEE
Q psy7040         515 TVLGCSLKWNPPE---DDGGAPIEYYMVEKMETDT-GKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT  590 (716)
Q Consensus       515 ~v~~v~l~W~~p~---~~~~~~i~~y~v~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  590 (716)
                      .+.........+.   ..+..    ..+....... +.+.+.|++.+......   .....+.|.++...+.+.|+|.|.
T Consensus        85 ~V~~~p~~~~~~~~~v~~G~~----v~L~C~~~~~~p~~~v~W~k~g~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~  157 (204)
T 3sgj_C           85 EVHIGWLLLQAPRWVFKEEDP----IHLRCHSWKNTALHKVTYLQNGKGRKYF---HHNSDFYIPKATLKDSGSYFCRGL  157 (204)
T ss_dssp             EEECSSEEEECSCSEEETTCC----EEEEEEEGGGCCCEEEEEEETTEEEEEE---EECCCEEESSCCGGGCEEEEEEEE
T ss_pred             EEecCceEecCCceeEeCCCc----EEEEEEecCCCCCceEEEEECCcEeecc---cCCceEEECcCCcccCEEEEEEEE
Confidence            4441100111111   11122    2233332222 34569999987754321   123789999999999999999999


Q ss_pred             cCC-CCCccceeeeccCCCCCCc
Q psy7040         591 NSQ-GKDQVFIEVVVTDKPSAPE  612 (716)
Q Consensus       591 n~~-G~~~~s~~~~v~~~p~~~~  612 (716)
                      |.. +.......+.|..+|..|.
T Consensus       158 n~~~~~~s~~~~l~V~~~~~~P~  180 (204)
T 3sgj_C          158 VGSKNVSSETVQITITQGLAVST  180 (204)
T ss_dssp             ETTEEEECCCEEEEEEC------
T ss_pred             eCCCceecCcEEEEEeCcCCCCc
Confidence            953 3333444445777666665

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.00  E-value=3.7e-09  Score=96.84  Aligned_cols=116  Identities=13%  Similarity=0.141  Sum_probs=75.3

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCC---CCccceeeeccCCC-CCCccceee-------ccceeEEEEEEeeEEEEeeee
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQG---KDQVFIEVVVTDKP-SAPEGPIQW-------LLTLTDVTWEISNYLQELHSS  638 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G---~~~~s~~~~v~~~p-~~~~~~~~~-------~~~~v~l~w~i~~y~v~~~~~  638 (716)
                      ..+.|.+++..+.+.|.|.|.|..|   .......+.|...+ ..|. +...       .+..+.|.+.+.++.-     
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~-i~~~~~~~~~~~g~~v~l~C~~~g~~p-----  143 (213)
T 3mj8_L           70 ATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPS-VTLFPPSSEELKTNQATLVCMINGFYP-----  143 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCE-EEEECCCHHHHTTTEEEEEEEEEEEBS-----
T ss_pred             EEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCe-EEccCCCcccccCCcEEEEEEeeceeC-----
Confidence            7899999999999999999999887   22223334454333 3333 3221       2455554443322100     


Q ss_pred             ccCceeeEEEEeCCeEeeec-----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeE
Q psy7040         639 LMPISLESQYLMNDKRVTID-----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI  694 (716)
Q Consensus       639 ~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~  694 (716)
                         ..-.+.|+++|..+...           .......|.|..+..+|.|.|+|.|.|..|....+.
T Consensus       144 ---~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          144 ---ADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             ---SCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             ---CCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence               00078999999988642           011225589999999999999999999886555444

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.00  E-value=6.3e-09  Score=93.72  Aligned_cols=151  Identities=7%  Similarity=0.007  Sum_probs=101.2

Q ss_pred             EEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce--eeEEEE
Q psy7040         437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD--KGTAKV  514 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~--~~s~~~  514 (716)
                      .+..|+.+.|.|.+.+ +.+.+.|++++..+... ............|.|.++...|.|.|+|.|.|..|..  +....+
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l   92 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWD-RQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLEL   92 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSE-EECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEE
T ss_pred             cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccc-ccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEE
Confidence            6889999999999988 77899999998776431 1111122456789999999999999999999998832  444555


Q ss_pred             EEE----EEEEEEeCC--CCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec------cccceeEEEEcCCCCCCe
Q psy7040         515 TVL----GCSLKWNPP--EDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID------NVDYFTKITIRPLQRSDT  582 (716)
Q Consensus       515 ~v~----~v~l~W~~p--~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~------~~~~~~~~~i~~L~~~~~  582 (716)
                      .+.    ...+.-.+.  ...+......|.....     .+...|++.+.......      .......+.|.++...+.
T Consensus        93 ~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~-----~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  167 (196)
T 3p2t_A           93 VMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP-----MDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHG  167 (196)
T ss_dssp             EEECSSCCCEEEEESCSEECTTCCEEEEEEEEEE-----EEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGC
T ss_pred             EecCCCCCCEEEeCCcceecCCCeEEEEEecCCC-----CCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCC
Confidence            553    112221221  1223333445554432     22388998875432110      112347799999999999


Q ss_pred             EEEEEEEEcCCC
Q psy7040         583 AQYTVTATNSQG  594 (716)
Q Consensus       583 y~~~v~a~n~~G  594 (716)
                      +.|+|.|.|..+
T Consensus       168 G~Y~C~a~n~~~  179 (196)
T 3p2t_A          168 GTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEEEECGGG
T ss_pred             CeEEEEEEcCCC
Confidence            999999999876

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.00  E-value=7e-09  Score=80.81  Aligned_cols=85  Identities=19%  Similarity=0.294  Sum_probs=75.9

Q ss_pred             cccEEEecCCeEEEEEEEecc-CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      +.++.+..|..+.|.|.+.+. |.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|....+
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   87 (97)
T 2bk8_A            8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSY   87 (97)
T ss_dssp             CCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEE
Confidence            446889999999999999997 9999999999999988888888777778899999999999999999999999988887


Q ss_pred             EEEEEE
Q psy7040         512 AKVTVL  517 (716)
Q Consensus       512 ~~~~v~  517 (716)
                      ..+.+.
T Consensus        88 ~~l~V~   93 (97)
T 2bk8_A           88 AELFVK   93 (97)
T ss_dssp             EEEEET
T ss_pred             EEEEEE
Confidence            777653

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.99  E-value=5.9e-09  Score=81.69  Aligned_cols=85  Identities=32%  Similarity=0.519  Sum_probs=76.9

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +..+.+..|..+.|.|.+.+.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|....+.
T Consensus        13 ~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~   92 (99)
T 3puc_A           13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC   92 (99)
T ss_dssp             CCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            45678999999999999999999999999999999888888888877788999999999999999999999999988877


Q ss_pred             EEEEE
Q psy7040         513 KVTVL  517 (716)
Q Consensus       513 ~~~v~  517 (716)
                      .+.+.
T Consensus        93 ~l~V~   97 (99)
T 3puc_A           93 KLTIK   97 (99)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77664

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.99  E-value=2e-09  Score=83.11  Aligned_cols=89  Identities=31%  Similarity=0.505  Sum_probs=72.7

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      +|.+.. .+..+.+..|+.+.|.|.+.|.|.|.+.|++++  ..+....  .+........|.|.++...|.|.|+|.|.
T Consensus         2 ~P~i~~-~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   78 (93)
T 1wit_A            2 KPKILT-ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECC-CCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEc-CCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCCChhcCEEEEEEEE
Confidence            455432 345788999999999999999999999999999  7775443  33344556889999999999999999999


Q ss_pred             cCCCceeeEEEEEE
Q psy7040         503 NSWGTDKGTAKVTV  516 (716)
Q Consensus       503 n~~g~~~~s~~~~v  516 (716)
                      |..|....++.+.|
T Consensus        79 N~~G~~~~~~~l~V   92 (93)
T 1wit_A           79 NELGEDEAIFEVIV   92 (93)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEEEE
Confidence            99998888877765

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.99  E-value=1.3e-08  Score=91.18  Aligned_cols=159  Identities=20%  Similarity=0.303  Sum_probs=107.6

Q ss_pred             ccEEEecCCeEEEEEEEeccC-CCeEEEEe-CCeEec-cCCcEEEEe-CCCeEEEEECCCCCCCceeEEEEEEcCCC-ce
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP-IPTKEWLC-NDITII-SKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSWG-TD  508 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p-~~~~~W~~-~~~~~~-~~~~~~~~~-~~~~~~l~i~~l~~~~~~~y~~~a~n~~g-~~  508 (716)
                      ..+.+..|+.+.|.|.+.+.+ .+.+.|++ ++..+. ...++.+.. ......|.|.++...|.|.|+|.|.|..| ..
T Consensus        10 ~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~   89 (191)
T 1epf_A           10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS   89 (191)
T ss_dssp             SSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred             CCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcce
Confidence            457789999999999999877 78999999 777776 344555433 35678999999999999999999999984 44


Q ss_pred             eeEEEEEEE-EEEEEEeCC---CCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec----cccceeEEEEcCCCCC
Q psy7040         509 KGTAKVTVL-GCSLKWNPP---EDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID----NVDYFTKITIRPLQRS  580 (716)
Q Consensus       509 ~~s~~~~v~-~v~l~W~~p---~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~i~~L~~~  580 (716)
                      ...+.+.+. ...+.-.+.   ...+......|.+.    +.+.+.+.|++.+.......    .......+.|.++...
T Consensus        90 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~----g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  165 (191)
T 1epf_A           90 EATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVV----SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT  165 (191)
T ss_dssp             EEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEE----CSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGG
T ss_pred             EEEEEEEeecCceEecCCCcEeecCCCeEEEEEEEC----CCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChh
Confidence            455555554 111111110   11222223334433    33455599999876543111    0112347999999999


Q ss_pred             CeEEEEEEEEcCCCCC
Q psy7040         581 DTAQYTVTATNSQGKD  596 (716)
Q Consensus       581 ~~y~~~v~a~n~~G~~  596 (716)
                      +.+.|+|.|.|..|..
T Consensus       166 d~G~Y~C~a~n~~~~~  181 (191)
T 1epf_A          166 DEGTYRCEGRILARGE  181 (191)
T ss_dssp             GCEEEEEEEEEGGGTE
T ss_pred             hCEEEEEEEEEeccee
Confidence            9999999999987643

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=3.7e-09  Score=82.49  Aligned_cols=83  Identities=24%  Similarity=0.358  Sum_probs=71.7

Q ss_pred             cccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         431 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       431 ~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      ..+.++.+.+|+.+.|.|.+  .|.+.+.|++++..+..+.++.+...+....|.|.++.++|.|.|+|.|.|.  ..+.
T Consensus        12 ~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~   87 (100)
T 2yuz_A           12 TPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTL   87 (100)
T ss_dssp             BCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCE
T ss_pred             ccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeE
Confidence            34567899999999999999  8889999999999999889999988888889999999999999999999998  3444


Q ss_pred             EEEEEEE
Q psy7040         511 TAKVTVL  517 (716)
Q Consensus       511 s~~~~v~  517 (716)
                      ++.+.|.
T Consensus        88 ~a~L~V~   94 (100)
T 2yuz_A           88 PAKVHVI   94 (100)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            5555443

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.99  E-value=2.5e-09  Score=85.91  Aligned_cols=86  Identities=16%  Similarity=0.258  Sum_probs=67.8

Q ss_pred             EeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC----CceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCC
Q psy7040         334 KDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS----PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  409 (716)
Q Consensus       334 ~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~  409 (716)
                      ...+.++|.|+|.++ . .++.|.+|+|.|+..+.    ..|...........++.|.+|+|++.|.|+|+|+|..|.|+
T Consensus        25 ~a~sstsi~vsW~~~-~-~~g~i~gY~V~Y~~~~~~~~~~~~~~~~v~~~~~~~~~l~~L~p~T~Y~~~V~A~n~~G~Gp  102 (120)
T 1ujt_A           25 VVLTPTTVQVTWTVD-R-QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGM  102 (120)
T ss_dssp             CCCBTTEEEEEEEES-S-CCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCC
T ss_pred             EEccCceEEEEEccC-C-CCCcEeeEEEEEEECCCCCCCCccEEEEecCCCcCEEEECCCCCCCEEEEEEEEECCCccCC
Confidence            445789999999964 2 34479999999998764    45765444456678999999999999999999999999999


Q ss_pred             CCCCCCceEeec
Q psy7040         410 PSDPTAPHIARA  421 (716)
Q Consensus       410 ~s~~~~~~~~~~  421 (716)
                      +|......+...
T Consensus       103 ~S~~v~~~T~e~  114 (120)
T 1ujt_A          103 DSESKTVRTTEE  114 (120)
T ss_dssp             CCCCEEEEECSS
T ss_pred             CCCCEEEECCCC
Confidence            998755555443

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.99  E-value=6.1e-09  Score=95.22  Aligned_cols=127  Identities=18%  Similarity=0.187  Sum_probs=92.8

Q ss_pred             CCCeEEecCCC-CCCeEEEEEEEEeCCCCCCCCCCCCceEeecC----CCCCcccccccccEEEecCCeEEEEEEEeccC
Q psy7040         380 DTPKGKVLDLI-EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK----KVSPYINRDQLSDIKVRAGSNFEFDINVIGEP  454 (716)
Q Consensus       380 ~~~~~~i~~l~-~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~----~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p  454 (716)
                      ....+.|.++. ..+...|+|.|.|..|....+   ....+...    +..|.+.. .+....+..|..+.|.|.+.+.|
T Consensus        61 ~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~---~~l~V~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p  136 (212)
T 2yd6_A           61 SGSVLRIQPLRTPRDEAIYECVASNNVGEISVS---TRLTVLREDQIPRGFPTIDM-GPQLKVVERTRTATMLCAASGNP  136 (212)
T ss_dssp             TEEEEEECSCCTTTTCEEEEEEEEETTEEEEEE---EEEEEECGGGCCTTCCEEEE-CCCCEEEETTSCEEEEEEEECSS
T ss_pred             CceEEEEeccCCCCCCeEEEEEEEcCCCcEEEE---EEEEEeccCccCCCcceeec-CCcceeEecCCCEEEEEEecCCC
Confidence            34568899994 889999999999988752211   11111111    12244332 23456788999999999999999


Q ss_pred             CCeEEEEeCCeEeccC---CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         455 IPTKEWLCNDITIISK---DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       455 ~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      .+.+.|++++..+...   .++..........|.|.++...|.|.|+|.|.|..|....
T Consensus       137 ~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s  195 (212)
T 2yd6_A          137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYS  195 (212)
T ss_dssp             CCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcccc
Confidence            9999999999888653   4555555566789999999999999999999999997654

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.98  E-value=3.1e-09  Score=101.44  Aligned_cols=117  Identities=15%  Similarity=0.123  Sum_probs=80.9

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCc---ee--
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPI---SL--  644 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~---~~--  644 (716)
                      ..+.|.+++..+.+.|+|.|.|..+.......+.+...|..|.......+..+.              |.|.+   .+  
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~--------------L~C~~~~~~~~p  149 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQ--------------MRCSIQSTEEKR  149 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEE--------------ECCBCEESSSSC
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEE--------------EEEEecCCCCCC
Confidence            789999999999999999999977665444444432223333312333344444              66777   23  


Q ss_pred             --eEEEEeC-CeEeee-----------------------------cccceeeEEEEccCCCCCcEEEEEEEEcCCCCcee
Q psy7040         645 --ESQYLMN-DKRVTI-----------------------------DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV  692 (716)
Q Consensus       645 --~~~W~~~-~~~~~~-----------------------------~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~  692 (716)
                        .+.|+++ +.....                             ........|.|.++...|+|.|+|.|.|..|....
T Consensus       150 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~  229 (268)
T 3mj6_A          150 VTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRK  229 (268)
T ss_dssp             CCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEE
Confidence              8999983 321000                             00123468999999999999999999999998888


Q ss_pred             eEEEEEec
Q psy7040         693 FIEVVVTD  700 (716)
Q Consensus       693 s~~l~v~~  700 (716)
                      +..|.|..
T Consensus       230 ~~~l~V~~  237 (268)
T 3mj6_A          230 TIVLHVVQ  237 (268)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEc
Confidence            88888843

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.98  E-value=1.5e-08  Score=90.81  Aligned_cols=129  Identities=19%  Similarity=0.230  Sum_probs=100.0

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEE
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW  460 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W  460 (716)
                      ...+.|.++...+.+.|+|.|.|. |....+   ....   ...+|.+.. ......+..|..+.|.|.+.+.|.+.+.|
T Consensus        55 ~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~---~~l~---V~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~p~i~W  126 (190)
T 2wv3_A           55 NMEYRINKPRAEDSGEYHCVYHFV-SAPKAN---ATIE---VKAAPDITG-HKRSENKNEGQDAMMYCKSVGYPHPEWMW  126 (190)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEET-TEEEEE---EEEE---EECCCEEEE-ECSEEEEETTSCEEEEEEEECSSCCEEEE
T ss_pred             cEEEEEecCCcccCEEEEEEEEeC-Cccccc---EEEE---EecCCcccc-cCCcceeeCCCcEEEEEEeCccCCCceEE
Confidence            457889999999999999999997 432111   1111   122555442 23456789999999999999999999999


Q ss_pred             Ee--CCeEec---cCCcEEEEeCCCeEEEEECCCC-CCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         461 LC--NDITII---SKDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       461 ~~--~~~~~~---~~~~~~~~~~~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      ++  ++..+.   ...++.+...+....|.|.++. ..|.|.|+|.|.|..|....+..+.+.
T Consensus       127 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          127 RKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            99  676654   5667777777777899999999 799999999999999998888777653

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.98  E-value=1.2e-08  Score=94.81  Aligned_cols=68  Identities=7%  Similarity=0.090  Sum_probs=46.6

Q ss_pred             eccCcee---eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCC---CCceeeEEEEEecCCCCC
Q psy7040         638 SLMPISL---ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQ---GKDQVFIEVVVTDKPSAP  705 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~---G~~~~s~~l~v~~~p~~p  705 (716)
                      |.|.+.+   .+.|+|+|..+...  .......|.|.++...|+|.|+|.|.|..   ...+....|.|..++..|
T Consensus       121 L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P  196 (242)
T 1p6f_A          121 FYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENT  196 (242)
T ss_dssp             EEEECTTSCSEEEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-----
T ss_pred             EEEecCCCCCEEEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCCCC
Confidence            5555444   88999998765432  22345789999999999999999999974   223556778888766555

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.97  E-value=4.8e-10  Score=100.99  Aligned_cols=125  Identities=11%  Similarity=-0.076  Sum_probs=86.9

Q ss_pred             CCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeE
Q psy7040         379 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK  458 (716)
Q Consensus       379 ~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~  458 (716)
                      .+...+.|.++...+.+.|.|.|.|..|.....   ....+.    +|.+....+....+.+|..+.|.|.+.|.|.|.+
T Consensus        66 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~---~~l~V~----~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v  138 (203)
T 4fa8_A           66 ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQ---EHLSVV----KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHV  138 (203)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE---EEEEEE----EEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEE
T ss_pred             CCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEE---EEEEec----CCceeeecceeEEEcCCCEEEEEEEcCCCCCCEE
Confidence            344578999999999999999999987753221   111111    2222223345566778999999999999999999


Q ss_pred             EEEeCCeEec----cCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         459 EWLCNDITII----SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       459 ~W~~~~~~~~----~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      .|++++..+.    ...++.+..++.-..+.+.++.+.|.|.|+|.|.|..|....
T Consensus       139 ~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          139 QWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             EECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             EEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            9998765443    233444444555556677899999999999999999998754

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.97  E-value=1.9e-08  Score=95.00  Aligned_cols=108  Identities=16%  Similarity=0.132  Sum_probs=60.1

Q ss_pred             CCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccC-----CCeEEEEeC
Q psy7040         389 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP-----IPTKEWLCN  463 (716)
Q Consensus       389 l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p-----~~~~~W~~~  463 (716)
                      +++++...|+|.|.   |....+.... . ..    +|.+. ..+..+.+..|+.+.|.|.+.+.+     .+.+.|+++
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~-~-~~----~~~~~-~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   80 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMN-W-LR----ELVMT-QSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQ   80 (254)
T ss_dssp             ------------------------------------CCCEE-EECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEE
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhh-e-ee----ceeEE-eCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEe
Confidence            56677888999987   3222111111 1 10    22222 224568899999999999999888     389999974


Q ss_pred             C--eEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         464 D--ITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       464 ~--~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      .  ..+            ....++.+...+....|.|.++...|.|.|.|.|.|..+
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  137 (254)
T 2c1o_A           81 RPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFP  137 (254)
T ss_dssp             CTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSS
T ss_pred             CCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcc
Confidence            3  211            113566666666777999999999999999999987654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.97  E-value=7.9e-09  Score=80.95  Aligned_cols=85  Identities=27%  Similarity=0.378  Sum_probs=73.1

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEE-eCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      +....+..|..+.|.|.+.+.|.+.+.|++++..+....++.+. ..+....|.|.++...|.|.|+|.|.|..|....+
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~   91 (99)
T 1g1c_A           12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH   91 (99)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEE
Confidence            45678999999999999999999999999999998876665543 34567789999999999999999999999988887


Q ss_pred             EEEEEE
Q psy7040         512 AKVTVL  517 (716)
Q Consensus       512 ~~~~v~  517 (716)
                      ..+.|.
T Consensus        92 ~~l~V~   97 (99)
T 1g1c_A           92 AFLLVQ   97 (99)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            776653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.97  E-value=2.8e-09  Score=96.45  Aligned_cols=131  Identities=13%  Similarity=0.049  Sum_probs=86.7

Q ss_pred             eeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCC---CCccceeeccceeEEEEE
Q psy7040         551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS---APEGPIQWLLTLTDVTWE  627 (716)
Q Consensus       551 ~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~---~~~~~~~~~~~~v~l~w~  627 (716)
                      +.|++.+......     ...+.|.++...+.+.|+|.|.|...  .....+.|..+|.   .+. .....+..+.    
T Consensus        40 v~W~k~g~~l~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~~--s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~----  107 (204)
T 3sgj_C           40 TQWFHNESLISSQ-----ASSYFIDAATVDDSGEYRCQTQLSTL--SDPVQLEVHIGWLLLQAPR-WVFKEEDPIH----  107 (204)
T ss_dssp             EEEEETTEEESCC-----SSEEEESSCCGGGCEEEEEEETTSBC--CCCEEEEEECSSEEEECSC-SEEETTCCEE----
T ss_pred             EEEEECCEEcccC-----ccEEEEecccccCCEEEEEEeCCCcc--cccEEEEEecCceEecCCc-eeEeCCCcEE----
Confidence            7898877654322     37899999999999999999987432  2333344443331   111 1112233444    


Q ss_pred             EeeEEEEeeeeccCcee-----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEc-CCCCceeeEEEEEecC
Q psy7040         628 ISNYLQELHSSLMPISL-----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN-SQGKDQVFIEVVVTDK  701 (716)
Q Consensus       628 i~~y~v~~~~~~~~~~~-----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n-~~G~~~~s~~l~v~~~  701 (716)
                                |.|.+.+     .+.|+++|..+...  .....|.|.++..+|+|.|+|.|.| ..|..+....|.|..+
T Consensus       108 ----------L~C~~~~~~p~~~v~W~k~g~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (204)
T 3sgj_C          108 ----------LRCHSWKNTALHKVTYLQNGKGRKYF--HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQG  175 (204)
T ss_dssp             ----------EEEEEGGGCCCEEEEEEETTEEEEEE--EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             ----------EEEEecCCCCCceEEEEECCcEeecc--cCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCc
Confidence                      4555532     79999999987543  2346899999999999999999999 4455577788999987


Q ss_pred             CCCC
Q psy7040         702 PSAP  705 (716)
Q Consensus       702 p~~p  705 (716)
                      |.+|
T Consensus       176 ~~~P  179 (204)
T 3sgj_C          176 LAVS  179 (204)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7666

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.97  E-value=7e-09  Score=95.70  Aligned_cols=119  Identities=12%  Similarity=0.065  Sum_probs=77.7

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCcccee----eccceeEEEEEEeeEEEEeeeeccCcee-
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ----WLLTLTDVTWEISNYLQELHSSLMPISL-  644 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~----~~~~~v~l~w~i~~y~v~~~~~~~~~~~-  644 (716)
                      ..+.|.+++..+.+.|+|.|.| .|.......+.|..+|..+. ...    ..+..+.              |.|.+.| 
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~-~~~~~~~~~g~~v~--------------L~C~~~g~  143 (222)
T 3sbw_C           80 AALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKIN-QRILVVDPVTSEHE--------------LTCQAEGY  143 (222)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCE-EEEEEEETTTTEEE--------------EEEEEEEB
T ss_pred             EEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCC-ceeeeeecCCCcEE--------------EEEEecCC
Confidence            6899999999999999999999 45433334444666665554 221    1234454              4555555 


Q ss_pred             ---eEEEEeC-CeEeeecc-----ccee---eEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCC
Q psy7040         645 ---ESQYLMN-DKRVTIDN-----VDYF---TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA  704 (716)
Q Consensus       645 ---~~~W~~~-~~~~~~~~-----~~~~---~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~  704 (716)
                         .+.|+++ |..+....     ....   ....+..+...|.|.|+|.|.|..|....+..|.|..+|-.
T Consensus       144 P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~~  215 (222)
T 3sbw_C          144 PKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLA  215 (222)
T ss_dssp             SCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC---
T ss_pred             CCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCccc
Confidence               8999998 55443321     0111   11222245578999999999999999999999999876643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=1.3e-09  Score=108.20  Aligned_cols=137  Identities=16%  Similarity=0.127  Sum_probs=97.2

Q ss_pred             eeEEEccceeeeec---cccceeEEEEcCCCCCCeE-EEEEEEEcCCCCCccceeeeccCCCCCCccceeeccceeEEEE
Q psy7040         551 IKWIRTNDKRVTID---NVDYFTKITIRPLQRSDTA-QYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTW  626 (716)
Q Consensus       551 ~~w~~~~~~~~~~~---~~~~~~~~~i~~L~~~~~y-~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w  626 (716)
                      +.|++.+.......   .......+.|.++...+.+ .|+|.|.|..|.......+.|..+|.. .......+..+.   
T Consensus       190 i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i-~~~~~~~g~~v~---  265 (347)
T 2ifg_A          190 AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV-QLHTAVEMHHWC---  265 (347)
T ss_dssp             CCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE-EECCCEESSSEE---
T ss_pred             EEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee-eeccCccCceEE---
Confidence            66766554321111   1223478999999999999 999999999887766555556665542 101112233444   


Q ss_pred             EEeeEEEEeeeeccCcee----eEEEEeCCeEeeeccc-------------ceeeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         627 EISNYLQELHSSLMPISL----ESQYLMNDKRVTIDNV-------------DYFTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       627 ~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~~~-------------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                                 +.|.+.|    .+.|+++|..+.....             .....|.|.++...|+|.|+|.|.|..|.
T Consensus       266 -----------l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~  334 (347)
T 2ifg_A          266 -----------IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ  334 (347)
T ss_dssp             -----------EEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             -----------EEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCc
Confidence                       5555555    8999999998875411             12466999999999999999999999999


Q ss_pred             ceeeEEEEEecCC
Q psy7040         690 DQVFIEVVVTDKP  702 (716)
Q Consensus       690 ~~~s~~l~v~~~p  702 (716)
                      ...++.|.|..+|
T Consensus       335 ~~~~~~l~V~~~P  347 (347)
T 2ifg_A          335 ASASIMAAFMDNP  347 (347)
T ss_dssp             EEEEEEECSCCCC
T ss_pred             eeeEEEEEecCCC
Confidence            9999999888765

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}

Probab=98.96  E-value=3.1e-09  Score=82.48  Aligned_cols=80  Identities=19%  Similarity=0.343  Sum_probs=64.9

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  406 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g  406 (716)
                      +|.++.+..++.+++.|+|.+|..    .+.+|.|.|+..+...............++.|.+|.|++.|.|+|+|.|..|
T Consensus         4 ~P~~l~v~~~t~~Sv~lsW~~p~~----~i~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~l~gL~P~t~Y~~~V~A~~~~g   79 (98)
T 3tes_A            4 APKNLVVSEVTEDSLRLSWTAPDA----AFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVKGGH   79 (98)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCTT----SCSEEEEEEEETTBCSCCEEEEEETTCSEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCceEEEecCCCeEEEEecCCcC----ccceEEEEEEECCCCCceEEEEcCCCcCEEEECCCCCCCEEEEEEEEEeCCc
Confidence            577899999999999999999742    5899999999865322223334566789999999999999999999999988


Q ss_pred             CCCC
Q psy7040         407 PGEP  410 (716)
Q Consensus       407 ~~~~  410 (716)
                      .|.+
T Consensus        80 ~S~p   83 (98)
T 3tes_A           80 RSNP   83 (98)
T ss_dssp             EBCC
T ss_pred             ccCC
Confidence            7754

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=3.4e-09  Score=83.50  Aligned_cols=84  Identities=17%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      ..|.+|.++++...+.+++.|+|.+|..     +.+|.|+|+..+...|...........++.|.+|.|++.|.|+|+|.
T Consensus         7 ~~~~~P~~l~~~~~~~~sv~lsW~~p~~-----~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~   81 (104)
T 2dkm_A            7 GPLPPPRALTLAAVTPRTVHLTWQPSAG-----ATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSL   81 (104)
T ss_dssp             CSCCCCCCCEEEEECSSEEEEECCCCSS-----CSEEEEEEEESSSCCSSCCEEEEESSSEEEEESCCTTCCEEEEEEEE
T ss_pred             CCCCCCceeEEEecCCCEEEEEEeCCCC-----CCeEEEEEEECCCCCCcceEEEecCCCEEEECCCCCCCEEEEEEEEE
Confidence            4567899999999999999999998642     38999999876643332111111122399999999999999999999


Q ss_pred             eCCCCCCCC
Q psy7040         403 NKGGPGEPS  411 (716)
Q Consensus       403 n~~g~~~~s  411 (716)
                      |..|.+.+.
T Consensus        82 ~~~~~s~p~   90 (104)
T 2dkm_A           82 RGPEGSEAR   90 (104)
T ss_dssp             CSSSBCCCE
T ss_pred             CCCCCCCCE
Confidence            998877654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.95  E-value=1.4e-08  Score=90.62  Aligned_cols=50  Identities=6%  Similarity=0.104  Sum_probs=38.1

Q ss_pred             eccCcee---eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCC
Q psy7040         638 SLMPISL---ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQ  687 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~  687 (716)
                      |.|.+.+   .+.|+++|..+...  .......|.|.++..+|+|.|+|.|.|..
T Consensus       118 L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          118 FYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EEEECSSSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             EEEEcCCCCCEEEEEECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            5555444   78999998765432  12344789999999999999999999965

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=3.3e-10  Score=89.62  Aligned_cols=88  Identities=20%  Similarity=0.304  Sum_probs=72.0

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      ..|.+|.++.+...+.+++.|+|.+|.    +.+.+|+|.|+..+...+...........+++|.+|.|++.|.|+|+|.
T Consensus         6 ~~p~~P~~l~v~~~t~~si~lsW~~p~----g~i~~Y~v~y~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~   81 (105)
T 2ekj_A            6 SGRSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAI   81 (105)
T ss_dssp             TTCCCCEEEEEEEEETTEEEEEEECCS----SCCSBBCBBCCCTTSCSCCCCBCCBTTSSEEEECSCCSSCCCBCBBCBB
T ss_pred             cCCCCCCceEEEeCCCCEEEEEEeCCC----CcceEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            568899999999999999999999973    3689999999876533222223345678999999999999999999999


Q ss_pred             eCCCCCCCCCCC
Q psy7040         403 NKGGPGEPSDPT  414 (716)
Q Consensus       403 n~~g~~~~s~~~  414 (716)
                      |..|.+.++...
T Consensus        82 ~~~g~g~~s~~~   93 (105)
T 2ekj_A           82 YAAGRSEAVSAT   93 (105)
T ss_dssp             CSSCBCCCBCCB
T ss_pred             eCCccCCccccE
Confidence            999999877654

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}

Probab=98.95  E-value=2.1e-09  Score=87.05  Aligned_cols=90  Identities=16%  Similarity=0.190  Sum_probs=66.3

Q ss_pred             EEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEE
Q psy7040         217 VIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKF  296 (716)
Q Consensus       217 ~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~  296 (716)
                      .....+|.+|.+ |.+.....+++.|+|++|..    .+.+|.|.+...+...+..........+.+.|.+|.|++.|.|
T Consensus        23 ~~~~tp~~~P~~-l~v~~~t~~Si~lsW~~p~~----~i~~Y~V~y~~~~~~~~~~~~~v~~~~t~~~l~gL~P~t~Y~~   97 (121)
T 2ocf_D           23 YFQGSVSDVPTK-LEVVAATPTSLLISWDAPAV----TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTI   97 (121)
T ss_dssp             ------CCSCEE-EEEEEECSSCEEEEEECCSS----CCCEEEEEEEETTTCSCBEEEEEETTCCEEEECCCCTTCEEEE
T ss_pred             eeccCCCCCCCc-cEEEecCCCEEEEEEcCCCC----CCcEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEE
Confidence            334456788888 89999999999999998753    4899999998765533211112234578999999999999999


Q ss_pred             EEEEEcCCCCCCCCc
Q psy7040         297 RVRAVNKQGKSEPLT  311 (716)
Q Consensus       297 ~v~a~n~~g~~~~~~  311 (716)
                      +|.|.|..|.+..+.
T Consensus        98 ~V~A~~~~G~g~~Ss  112 (121)
T 2ocf_D           98 TVYAVTGLRLMLAGS  112 (121)
T ss_dssp             EEEEECCHHHHHHSC
T ss_pred             EEEEEeCCCccCCCC
Confidence            999999998876544

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.94  E-value=6.6e-09  Score=93.05  Aligned_cols=131  Identities=19%  Similarity=0.280  Sum_probs=97.1

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCccccc-ccccEEEecCCeEEEEEEEeccCCCeEE
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD-QLSDIKVRAGSNFEFDINVIGEPIPTKE  459 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~-~~~~~~~~~g~~~~~~~~v~~~p~~~~~  459 (716)
                      ...+.|.++...+.+.|+|.+.+..+....... .....   ..+|.+... ......+..|..+.|.|.+.+.|.+.+.
T Consensus        56 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~-~~l~v---~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~  131 (189)
T 2v5t_A           56 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRD-IIVIV---NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS  131 (189)
T ss_dssp             TSCEEETTCCGGGCEEEEEEEEETTTTEEEEEE-EEEEE---EEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEE
T ss_pred             CCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEE-EEEEe---cCCCCcccccccccccccCCCcEEEEEEEccCCCCeEE
Confidence            346999999999999999999988753221111 11111   113333211 1224567789999999999999999999


Q ss_pred             EEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         460 WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       460 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      |++++..+....++.+...  ...|.|.++...|.|.|+|.|.|..|....+..+.+.
T Consensus       132 W~~~g~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          132 WFRNGKLIEENEKYILKGS--NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             EEETTEECCCSSSEEEETT--TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEECCEECcCCCcEEEecC--CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            9999999887777665433  4589999999999999999999999998887776653

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=2.7e-10  Score=90.09  Aligned_cols=87  Identities=16%  Similarity=0.239  Sum_probs=67.7

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC-cEEEec-ccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-VWIPVG-KTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~-~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +.||.+|++..++.+++.|+|++|.    ..+.+|+|+|+..... .+.... ....++++|.+|.|++.|.|+|+|.|.
T Consensus         8 p~~P~~l~v~~~t~~si~lsW~~p~----g~i~~Y~v~y~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~~~   83 (105)
T 2ekj_A            8 RSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYA   83 (105)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECCS----SCCSBBCBBCCCTTSCSCCCCBCCBTTSSEEEECSCCSSCCCBCBBCBBCS
T ss_pred             CCCCCceEEEeCCCCEEEEEEeCCC----CcceEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEEeC
Confidence            3456668889999999999999983    3599999999765543 232222 234589999999999999999999999


Q ss_pred             CccCCCccccceE
Q psy7040         133 EGESEPLETFSSI  145 (716)
Q Consensus       133 ~g~~~~s~~~~~~  145 (716)
                      .|.+.++.....+
T Consensus        84 ~g~g~~s~~~~~T   96 (105)
T 2ekj_A           84 AGRSEAVSATGQT   96 (105)
T ss_dssp             SCBCCCBCCBCCC
T ss_pred             CccCCccccEEEc
Confidence            9999887665443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.94  E-value=1.2e-09  Score=86.50  Aligned_cols=65  Identities=12%  Similarity=0.101  Sum_probs=53.7

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                      |.|.+.|    .+.|+++|+.+..+      ..+....|.|.++...|+|.|+|.|.|..|....++.|.|..+|
T Consensus        33 l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           33 LKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             EEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             EEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence            5566665    89999999998765      12334689999999999999999999999999999999999876

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.94  E-value=3.4e-09  Score=84.38  Aligned_cols=92  Identities=15%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             CCCCCCceEEEEe--CCeEEEEecCCCC--CCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIH--KDGCTLKWNKPKD--DGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~~--~~s~~l~W~~p~~--~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      ++||..|.+....  .+++.|+|++|..  +.+..+..|+|+|+..+...|........+++.|.+|.+++.|.|+|+|.
T Consensus         8 p~pP~~l~v~~~~~~~~~l~lsW~~P~~w~~~~~~~l~Y~v~y~~~~~~~w~~~~~~~~~~~~l~~L~p~t~Y~~~VRa~   87 (109)
T 1uc6_A            8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAHTITDAYAGKEYIIQVAAK   87 (109)
T ss_dssp             CCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEESSCSEEEETTCCSSSCEEEEEECC
T ss_pred             cCCCcceEEEEcCCCCCEEEEEECCCCCccCCCcEEEEEEEEEEECCCCCcEEEecccCCEEEEeCCCCCCEEEEEEEEE
Confidence            4566666666554  4799999999874  22335889999999887777765555556899999999999999999999


Q ss_pred             ecCccCCCccccceEEe
Q psy7040         131 NKEGESEPLETFSSIIA  147 (716)
Q Consensus       131 ~~~g~~~~s~~~~~~~~  147 (716)
                      +. |.+.+|..+.....
T Consensus        88 ~~-g~g~wS~WS~~~~~  103 (109)
T 1uc6_A           88 DN-EIGTWSDWSVAAHA  103 (109)
T ss_dssp             BS-SSCCCCCCCEEEEE
T ss_pred             eC-CCCCcCcCCCCeee
Confidence            85 77776666655443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.93  E-value=9.2e-09  Score=94.03  Aligned_cols=129  Identities=20%  Similarity=0.299  Sum_probs=93.3

Q ss_pred             CeEEecCCCC-CCeEEEEEEEEeCCCCCCCCCCCCceEeecC----CCCCcccccccccEEEecCCeEEEEEEEeccCCC
Q psy7040         382 PKGKVLDLIE-GNQYEFRVLAVNKGGPGEPSDPTAPHIARAK----KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP  456 (716)
Q Consensus       382 ~~~~i~~l~~-~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~----~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~  456 (716)
                      ..+.|.++.. .+.+.|+|.|.|..|......  ....+...    ..+|.+. ..+....+..|..+.|.|.+.+.|.+
T Consensus        64 ~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~--~~l~V~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~g~p~p  140 (212)
T 2yd1_A           64 SILRIEPVRAGRDDAPYECVAENGVGDAVSAD--ATLTIYEGDKTPAGFPVIT-QGPGTRVIEVGHTVLMTCKAIGNPTP  140 (212)
T ss_dssp             EEEEESSCCTTTTCSEEEEEEECSSSCEEEEE--EEEEEECTTCSCTTCCEEE-ECCCCEEEETTCCEEECCEEECSSCC
T ss_pred             EEEEEEecCCCCcCceEEEEEEeCCCCeEEee--EEEEEecccCCCCCCCeeE-eCCCceEeecCCeEEEEEEeccCCCC
Confidence            5788999998 889999999999877521111  11111111    1124433 22345778899999999999999999


Q ss_pred             eEEEEeCCeEecc-CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE-EEEEEE
Q psy7040         457 TKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTVL  517 (716)
Q Consensus       457 ~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s-~~~~v~  517 (716)
                      .+.|++++..+.. ..++.+. .   ..|.|.++...|.|.|+|.|.|..|..... +.+.|.
T Consensus       141 ~i~W~~~~~~~~~~~~~~~~~-~---~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~  199 (212)
T 2yd1_A          141 NIYWIKNQTKVDMSNPRYSLK-D---GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK  199 (212)
T ss_dssp             EEEEEETTEECCTTSTTEEEE-T---TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             eEEEEECCeEcccCCCeEEcc-C---CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEE
Confidence            9999999998865 3344332 2   289999999999999999999999987653 555554

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.93  E-value=6e-09  Score=83.99  Aligned_cols=88  Identities=18%  Similarity=0.240  Sum_probs=65.5

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCC-CCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKD-DGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      ||.++.+.. +.++|.|+|++|.. ..++.|.+|+|.|+..+...+.. .....+.+.+. |.+++.|.|+|+|.|..|.
T Consensus        21 ~P~~v~~~~-~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~-~~~~~~~~~~~-L~~~t~Y~~~V~A~n~~G~   97 (117)
T 1wj3_A           21 PPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQV-LNTNKTSAELV-LPIKEDYIIEVKATTDGGD   97 (117)
T ss_dssp             CCCSCBCCE-ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEE-EEESSSEEEEE-CCCSSCEEEEEEEEESSCC
T ss_pred             CCccEEEEE-eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCCeE-EeCCCcEEEEE-CCCCCEEEEEEEEECCCcc
Confidence            455566666 88899999999842 23345999999998766554432 22334678888 9999999999999999999


Q ss_pred             CCCccccceEEe
Q psy7040         136 SEPLETFSSIIA  147 (716)
Q Consensus       136 ~~~s~~~~~~~~  147 (716)
                      +.++......+.
T Consensus        98 Gp~S~~v~~~T~  109 (117)
T 1wj3_A           98 GTSSEQIRIPRI  109 (117)
T ss_dssp             CCBCCCEEECCC
T ss_pred             CCCCCCEEEEcC
Confidence            998866554443

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1

Probab=98.93  E-value=9.9e-08  Score=88.22  Aligned_cols=183  Identities=11%  Similarity=0.159  Sum_probs=120.0

Q ss_pred             CCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeC--CCCCeEEccc---cCcccceEEE--cCCCCCCeEEEE
Q psy7040         225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDE--ATGRWTPAGE---TEGPVTGLEV--EGLIPNHKYKFR  297 (716)
Q Consensus       225 ~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~--~~~~~~~~~~---~~~~~~~~~i--~~L~p~~~y~~~  297 (716)
                      +|.+ +.+.......++.+|.+...  . ....|.+.+.-.  ....|..|..   ..+....+.+  ..+.....|.+.
T Consensus        39 ~~~n-l~C~~~~~~~l~CtW~~g~~--~-~~t~y~l~y~~~~~~~~~~~~C~~y~~~~g~~~~C~f~~~~~~~~~~y~i~  114 (247)
T 2erj_C           39 PLPE-VQCFVFNVEYMNCTWQSSSE--P-QPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQ  114 (247)
T ss_dssp             CCCC-CEEEEETTSEEEEECCTTSS--S-SCCCCEEEEEESSSSCCCCEECCSEEESSSSEEEEEEEGGGCCTTSCEEEE
T ss_pred             CCCC-CEEEECCCCEEEEEEcCCCC--C-CCeeEEEEEEECCCCCCcceeCCCccccCCcceEEEeCCCCcceeeEEEEE
Confidence            4555 78888788899999996431  1 236777776433  2245666643   1222334444  444556677777


Q ss_pred             EEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeee
Q psy7040         298 VRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT  377 (716)
Q Consensus       298 v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~  377 (716)
                      |.+  ..|..... .  ..........|.+|.++.+.......+.|+|.+|...   ....|.|+|+...+..|..... 
T Consensus       115 V~~--~~g~~~s~-~--~~~~~~~iVkP~PP~nl~v~~~~~~~l~l~W~~P~~~---~~L~Yevry~~~~~~~W~~~~~-  185 (247)
T 2erj_C          115 LQD--PREPRRQA-T--QMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTEQSV-  185 (247)
T ss_dssp             EEC--SSCTTCEE-E--EEECGGGSEECCCCEEEEEEESSSSCEEEEEECSSCC---TTEEEEEEEECSSCSSCEEEEE-
T ss_pred             EEE--CCCccccc-e--EEEchhHeEEeCCCCeEEEEECCCCcEEEEECCCCCC---CcEEEEEEEeeCCCCCCEEEec-
Confidence            753  33322111 1  1111112235889999999877778999999997531   3468999999877678876542 


Q ss_pred             cCCCCeEEecCCCCCCeEEEEEEEEeCC---CCCCCCCCCCceEeec
Q psy7040         378 EGDTPKGKVLDLIEGNQYEFRVLAVNKG---GPGEPSDPTAPHIARA  421 (716)
Q Consensus       378 ~~~~~~~~i~~l~~~~~Y~~~v~a~n~~---g~~~~s~~~~~~~~~~  421 (716)
                       .....+.|.+|.+++.|.|+|+|....   +.|.+|+.+.......
T Consensus       186 -~~~~~~~l~~L~p~~~Y~vqVR~k~~~~~~~~g~WSeWS~~~~~~t  231 (247)
T 2erj_C          186 -DYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGS  231 (247)
T ss_dssp             -CSSCEEEESCCCTTSCEEEEEEEEECSSSCCCCCCCCCCCCEEECC
T ss_pred             -CCceEEEecCCCCCCEEEEEEEEEeCCCCCCCCccCCCCcCEEEEC
Confidence             356789999999999999999999865   3567777777665543

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=5e-09  Score=86.05  Aligned_cols=81  Identities=21%  Similarity=0.336  Sum_probs=66.0

Q ss_pred             CCCCCCC-CcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeec-----------CCCceEEEeeecCCCCeEEecCCC
Q psy7040         323 NQPGKPG-TPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK-----------YSPIWEKCAQTEGDTPKGKVLDLI  390 (716)
Q Consensus       323 ~~p~~p~-~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~l~  390 (716)
                      .+|.+|. ++.+...+.+++.|+|.+|..++   +.+|.+.|+..           ....|.....  ...+++++.+|.
T Consensus        14 ~~P~~P~~~~~~~~~~~~sv~L~W~~p~~~g---~~~Y~~~Y~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~v~gL~   88 (127)
T 2dmk_A           14 TAPNPPSIREELCTASHDTITVHWISDDEFS---ISSYELQYTIFTGQANFISLYNSVDSWMIVPN--IKQNHYTVHGLQ   88 (127)
T ss_dssp             SSCCCCEEEEEEEEEETTEEEEEEECSCCSS---EEEEEEEEEEESCCSCHHHHHHTGGGSEEEEE--ECSSEEEEESCC
T ss_pred             CCCcCCCCCCEEEeeeCCEEEEEECCCCCCC---ccceEEEEEEecccccccccccCCCCcEEeec--ccCCeEEECCCC
Confidence            6788998 89999999999999999987543   77888888751           1245765443  457889999999


Q ss_pred             CCCeEEEEEEEEeCCCCC
Q psy7040         391 EGNQYEFRVLAVNKGGPG  408 (716)
Q Consensus       391 ~~~~Y~~~v~a~n~~g~~  408 (716)
                      |++.|.|+|+|.|..|.+
T Consensus        89 p~t~Y~frV~A~N~~G~~  106 (127)
T 2dmk_A           89 SGTRYIFIVKAINQAGSR  106 (127)
T ss_dssp             SSCEEEEEEEEEESSCEE
T ss_pred             CCCEEEEEEEEEeCCCCC
Confidence            999999999999999983

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.92  E-value=1e-09  Score=101.42  Aligned_cols=127  Identities=12%  Similarity=0.073  Sum_probs=81.2

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCc-ee----
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPI-SL----  644 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~-~~----  644 (716)
                      ..+.|.+++..+.+.|+|.+.|. +.......+.|..++..|. +.......+.     .|-.+   .|.|.+ .|    
T Consensus        72 ~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~-i~~~~~~~v~-----~G~~~---~l~C~~~~g~P~~  141 (222)
T 4i0k_A           72 ASLRLQRVRVTDEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPS-MTLEPNKDLR-----PGNMV---TITCSSYQGYPEA  141 (222)
T ss_dssp             CCEEECSCCGGGCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCE-EECCC----------CCSEE---EEEEEEEEEBSCC
T ss_pred             EEEEECCcccccCEEEEEEEEeC-CCceEEEEEEEEcCCCCCc-EEeCCCceec-----CCceE---EEEEecccccCCC
Confidence            78999999999999999999985 3344444444655555554 3221111110     11111   256666 33    


Q ss_pred             eEEEEe-CCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCC
Q psy7040         645 ESQYLM-NDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE  706 (716)
Q Consensus       645 ~~~W~~-~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~  706 (716)
                      .+.|++ ++..+...        ..+....+.|.++...|.|.|+|.|.|..|....+..|.|..+|-...
T Consensus       142 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~  212 (222)
T 4i0k_A          142 EVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFP  212 (222)
T ss_dssp             EEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC------
T ss_pred             eEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccccC
Confidence            899999 55544332        111124478999999999999999999999999999999998776543

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.92  E-value=1.3e-08  Score=78.10  Aligned_cols=72  Identities=19%  Similarity=0.351  Sum_probs=64.8

Q ss_pred             ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      .+.++.+.+|+.+.|.|.+.+ +.+.+.|++++..+..+.++.+..++....|.|.++.++|.|.|+|.|.|.
T Consensus        11 ~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A           11 PLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             CCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             cCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC
Confidence            355788999999999999986 457899999999998888999888888889999999999999999999884

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.92  E-value=4.4e-09  Score=100.04  Aligned_cols=192  Identities=14%  Similarity=0.065  Sum_probs=112.8

Q ss_pred             CCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCC-CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC
Q psy7040         289 IPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG-KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY  367 (716)
Q Consensus       289 ~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~  367 (716)
                      .....|.|+|.|.|..|....   ...+.+.... .|. .+....+  ..+..+.|.|...  +    ..  .+.|  .+
T Consensus        69 ~d~g~g~Y~C~a~n~~~~~~~---~~~l~V~~~p-~p~~~~~~~~v--~~G~~v~l~C~~~--p----~~--~i~W--~g  132 (265)
T 2oz4_A           69 EDEGTQRLTCAVILGNQSQET---LQTVTIYSFP-APNVILTKPEV--SEGTEVTVKCEAH--P----RA--KVTL--NG  132 (265)
T ss_dssp             GGCEEEEEEEEEEETTEEEEE---EEEEEEECCC-CCEEEESCSEE--ETTCEEEEEEECC--T----TS--EEEE--SS
T ss_pred             ccCCcceEEEEEecCCCCcEE---EEEEEEeCCC-CceeecCCcee--cCCCcEEEEEEcc--C----CC--EEEE--CC
Confidence            334455799999998775321   1122222110 010 1122222  2367788888873  1    11  2334  22


Q ss_pred             CCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC-CCCCCCCCCCceEeecCCCCCccccc-ccccEEEecCCeEE
Q psy7040         368 SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG-GPGEPSDPTAPHIARAKKVSPYINRD-QLSDIKVRAGSNFE  445 (716)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~-g~~~~s~~~~~~~~~~~~~~P~~~~~-~~~~~~~~~g~~~~  445 (716)
                       ...    ........+.+......+...|+|.|.|.. |............+   ..+|.+... .+....+.+|+.+.
T Consensus       133 -~~~----~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V---~~~p~~~~~~~p~~~~v~~g~~~~  204 (265)
T 2oz4_A          133 -VPA----QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV---LYGPRLDERDCPGNWTWPENSQQT  204 (265)
T ss_dssp             -CSS----SCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEE---EEEEECCGGGSCSEEEEETTCEEC
T ss_pred             -EEc----cCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEE---EeCCccccccCCCccEEcCCCeEE
Confidence             111    111233456677787888888999998644 54321101111111   123333222 23467889999999


Q ss_pred             EEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         446 FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       446 ~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      |.|.+.+.|.+.+.|++++......        +   .+  ..+...|.|.|+|.|.|..|....++.+.|.
T Consensus       205 l~C~~~g~P~p~i~W~~~~~~~~~~--------g---~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          205 PMCQAWGNPLPELKCLKDGTFPLPI--------G---ES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             CCCCCEEESCCEEEEEETTTEECCT--------T---SC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeECccCCCCeEEEEECCcccCCC--------C---cE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence            9999999999999999998732211        1   11  1377799999999999999998888877764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.92  E-value=1.2e-08  Score=93.33  Aligned_cols=118  Identities=13%  Similarity=0.124  Sum_probs=74.9

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCcc-ceeeeccCCCCCCcccee-------eccceeEEEEEEeeEEEEeeeeccC
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPSAPEGPIQ-------WLLTLTDVTWEISNYLQELHSSLMP  641 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~-s~~~~v~~~p~~~~~~~~-------~~~~~v~l~w~i~~y~v~~~~~~~~  641 (716)
                      ..+.|.+++..+.+.|+|.|.|..|.... ...+.|...+..|. +..       +.+..+.|.+.+.++.-        
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~-v~~~~~~~~~~~g~~~~l~C~~~g~~p--------  141 (213)
T 3d9a_L           71 FTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPT-VSIFPPSSEQLTSGGASVVCFLNNFYP--------  141 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCE-EEEECCCHHHHHTTEEEEEEEEEEEBS--------
T ss_pred             EEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCce-eEeECCChhhcCCCcEEEEEEEeeecC--------
Confidence            68999999999999999999998763221 12334444333333 222       12345554443222100        


Q ss_pred             ceeeEEEEeCCeEeeec-c--------cc----eeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040         642 ISLESQYLMNDKRVTID-N--------VD----YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV  696 (716)
Q Consensus       642 ~~~~~~W~~~~~~~~~~-~--------~~----~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l  696 (716)
                      ..-.+.|+++|..+... .        .+    ....|.|.++..+|.|.|+|.|.|..........+
T Consensus       142 ~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i  209 (213)
T 3d9a_L          142 KDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  209 (213)
T ss_dssp             SCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred             CceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence            00058999999987644 1        01    12489999999999999999999987765444333

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.92  E-value=4.7e-09  Score=84.30  Aligned_cols=85  Identities=14%  Similarity=0.227  Sum_probs=66.9

Q ss_pred             EEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC----CcEEE--ecccCCCeEEecCCCCCcEEEEEEEEEecCccCC
Q psy7040          64 SNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET----GVWIP--VGKTREPEMDVTGLTPGHEYKFRVKALNKEGESE  137 (716)
Q Consensus        64 ~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~----~~~~~--~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~  137 (716)
                      ...+.++|.|+|+++.  ....+.+|+|.|+..+.    ..|..  +......++.|.+|+|++.|.|+|+|.|..|.+.
T Consensus        25 ~a~sstsi~vsW~~~~--~~g~i~gY~V~Y~~~~~~~~~~~~~~~~v~~~~~~~~~l~~L~p~T~Y~~~V~A~n~~G~Gp  102 (120)
T 1ujt_A           25 VVLTPTTVQVTWTVDR--QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGM  102 (120)
T ss_dssp             CCCBTTEEEEEEEESS--CCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCC
T ss_pred             EEccCceEEEEEccCC--CCCcEeeEEEEEEECCCCCCCCccEEEEecCCCcCEEEECCCCCCCEEEEEEEEECCCccCC
Confidence            4557899999999653  33459999999987764    45653  2233357999999999999999999999999999


Q ss_pred             CccccceEEecCC
Q psy7040         138 PLETFSSIIARDP  150 (716)
Q Consensus       138 ~s~~~~~~~~~~p  150 (716)
                      +|......+..+.
T Consensus       103 ~S~~v~~~T~e~v  115 (120)
T 1ujt_A          103 DSESKTVRTTEES  115 (120)
T ss_dssp             CCCCEEEEECSSC
T ss_pred             CCCCEEEECCCCC
Confidence            9988777776543

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1

Probab=98.91  E-value=7.2e-09  Score=78.80  Aligned_cols=78  Identities=23%  Similarity=0.360  Sum_probs=58.6

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc-
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE-  135 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~-  135 (716)
                      +|..|.+...+.+++.|+|+++..+ + .+.+|+|++.   +..   +.....+++.+.+|.+++.|.|+|+|.|..|. 
T Consensus         6 ~P~~l~~~~~~~~sv~L~W~~~~~~-~-~i~~Y~v~~~---~~~---~~~~~~~~~~~~~L~~~t~Y~~~V~A~n~~G~~   77 (88)
T 1k85_A            6 APTNLASTAQTTSSITLSWTASTDN-V-GVTGYDVYNG---TAL---ATTVTGTTATISGLAADTSYTFTVKAKDAAGNV   77 (88)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCSCC-S-SEEEEEEEES---SSE---EEEESSSEEEECCCCSSCEEEEEEEEEETTTEE
T ss_pred             CCCccEEEeccCCEEEEEECCCCCC-C-CccEEEEEEC---CEE---EeecCCCEEEeCCCCCCCEEEEEEEEEeCCCCc
Confidence            4444777788899999999998643 3 3999999842   221   22233589999999999999999999999997 


Q ss_pred             CCCcccc
Q psy7040         136 SEPLETF  142 (716)
Q Consensus       136 ~~~s~~~  142 (716)
                      +.++...
T Consensus        78 s~~S~~v   84 (88)
T 1k85_A           78 SAASNAV   84 (88)
T ss_dssp             CCCCCCE
T ss_pred             CCCCCCE
Confidence            5555443

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.91  E-value=6.8e-09  Score=93.50  Aligned_cols=151  Identities=9%  Similarity=0.022  Sum_probs=95.6

Q ss_pred             EEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee--eEEEE
Q psy7040         437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK--GTAKV  514 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~--~s~~~  514 (716)
                      .+.+|+.+.|.|.+.+.|. .+.|++++..+..... ..........|.|.++.+.|.|.|+|.|.|..|...  ....+
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l   92 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLEL   92 (196)
T ss_dssp             EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEE
T ss_pred             cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEE
Confidence            6889999999999988776 9999999876532111 111234567899999999999999999999877543  33455


Q ss_pred             EEEE----EEEEEeC--CCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec-------cccceeEEEEcCCCCCC
Q psy7040         515 TVLG----CSLKWNP--PEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID-------NVDYFTKITIRPLQRSD  581 (716)
Q Consensus       515 ~v~~----v~l~W~~--p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~-------~~~~~~~~~i~~L~~~~  581 (716)
                      .+..    ..+.=.+  ....+......|.+    ...+ +.+.|++.+.......       .......+.|.++...+
T Consensus        93 ~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~----~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  167 (196)
T 2d3v_A           93 VVTGFYNKPTLSALPSPVVTSGENVTLQCGS----RLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSH  167 (196)
T ss_dssp             EEECSSCCCEEEC-----------CEEEEEE----SSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTB
T ss_pred             EecCCCCCCeEEccCCccccCCCcEEEEEEc----CCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCccc
Confidence            5441    1121111  01112222233333    2333 5599999876542111       11123789999999999


Q ss_pred             eEEEEEEEEcCCC
Q psy7040         582 TAQYTVTATNSQG  594 (716)
Q Consensus       582 ~y~~~v~a~n~~G  594 (716)
                      .+.|+|.|.|..+
T Consensus       168 ~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          168 RWMLRCYGSRRHI  180 (196)
T ss_dssp             CEEEEEEEEETTE
T ss_pred             CeeEEEEEEccCC
Confidence            9999999999765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.90  E-value=3.3e-09  Score=105.34  Aligned_cols=168  Identities=14%  Similarity=0.142  Sum_probs=117.6

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCce-eEEEEEEcCCCceeeEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG-IYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~-~y~~~a~n~~g~~~~s~  512 (716)
                      ..+.+.+|+.+.+.|.+.+.|.+.+.|++++..+.....  .........|.|.++...|.| .|+|.|.|..|....++
T Consensus       166 ~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~  243 (347)
T 2ifg_A          166 PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV  243 (347)
T ss_dssp             CSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEE
T ss_pred             CceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc--cceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEE
Confidence            456788999999999999999999999999865432111  112335678999999999999 99999999999887766


Q ss_pred             EEEEE-EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeecc------------ccceeEEEEcCCCC
Q psy7040         513 KVTVL-GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN------------VDYFTKITIRPLQR  579 (716)
Q Consensus       513 ~~~v~-~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~------------~~~~~~~~i~~L~~  579 (716)
                      .+.+. ...+.-..+ ..+......|.+...    +.|.+.|++.+........            ......+.|.++..
T Consensus       244 ~l~V~~~P~i~~~~~-~~g~~v~l~C~~~g~----P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  318 (347)
T 2ifg_A          244 QVNVSFPASVQLHTA-VEMHHWCIPFSVDGQ----PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH  318 (347)
T ss_dssp             CCCCBEEEEEEECCC-EESSSEEEEEEEEEE----SCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCG
T ss_pred             EEEEcCCCeeeeccC-ccCceEEEEEEeeec----CCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCc
Confidence            66655 222222222 222333344555444    3445999988765432111            01245699999999


Q ss_pred             CCeEEEEEEEEcCCCCCccceeeeccCCC
Q psy7040         580 SDTAQYTVTATNSQGKDQVFIEVVVTDKP  608 (716)
Q Consensus       580 ~~~y~~~v~a~n~~G~~~~s~~~~v~~~p  608 (716)
                      .+.+.|+|.|.|..|....+..+.|..+|
T Consensus       319 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          319 VNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             ccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            99999999999999987777766676655

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.89  E-value=1.3e-08  Score=89.17  Aligned_cols=59  Identities=20%  Similarity=0.254  Sum_probs=47.1

Q ss_pred             cEEEecCCeEEEEEEEeccC-CCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         435 DIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      .+.+..|+.+.|.|.+.+.| .+.+.|++++..+....          ..+.+.++...|.|.|+|.+.|
T Consensus        13 ~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~d~G~Y~C~~~~   72 (170)
T 3ry4_A           13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQ   72 (170)
T ss_dssp             CSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEEETT
T ss_pred             CeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc----------cceEEEecccccCeEEEEEEeC
Confidence            35688999999999999887 67899999998875432          2345567888999999998864

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.89  E-value=1.7e-08  Score=79.08  Aligned_cols=85  Identities=32%  Similarity=0.572  Sum_probs=71.5

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCc-EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      +....+..|..+.|.|.+.+.|.+.+.|++++..+..... +.+...+....|.|.++.+.|.|.|+|.|.|..|....+
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~   91 (99)
T 1u2h_A           12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCE   91 (99)
T ss_dssp             CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEE
Confidence            4457899999999999999999999999999998875544 444445556689999999999999999999999988877


Q ss_pred             EEEEEE
Q psy7040         512 AKVTVL  517 (716)
Q Consensus       512 ~~~~v~  517 (716)
                      ..+.|.
T Consensus        92 ~~l~V~   97 (99)
T 1u2h_A           92 ARLEVR   97 (99)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            776653

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.89  E-value=5e-09  Score=84.42  Aligned_cols=106  Identities=22%  Similarity=0.363  Sum_probs=76.8

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA  300 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a  300 (716)
                      ..|.+|.+ |++.....+++.|+|.+|..    .+.+|.|.+...+... ... ........+.|.+|.|++.|.|+|.|
T Consensus         6 t~p~~P~~-l~~~~~t~~sv~lsW~~p~~----~i~~Y~v~y~~~~~~~-~~~-~v~~~~t~~~l~~L~P~t~Y~~~V~A   78 (115)
T 2cuh_A            6 SGPDGPTQ-LRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAPP-LQA-ETPGSAVDYPLHDLVLHTNYTATVRG   78 (115)
T ss_dssp             CCCSSCEE-EECCCCSSSCEEEEEECCSS----CCSEEEEEEECSSSCC-EEE-EEETTCSEEEECSCCSSSEEEEEEEE
T ss_pred             cCCCCCcc-eEEEeccCCeEEEEEECCCC----CccEEEEEEEcCCCCc-EEE-EECCCccEEEEeCCCCCCEEEEEEEE
Confidence            46788887 88888899999999998642    5889999997654322 211 22355789999999999999999999


Q ss_pred             EcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCe
Q psy7040         301 VNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDF  340 (716)
Q Consensus       301 ~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~  340 (716)
                      .+..|.+.+..    ..+.+   .+.+|.++.+..++.++
T Consensus        79 ~~~~~~s~~~~----~~~~T---~~~~P~~l~~~~vt~~s  111 (115)
T 2cuh_A           79 LRGPNLTSPAS----ITFTT---GLEAPRDLEAKEVTPSG  111 (115)
T ss_dssp             EETTEECCCEE----EEEES---CCCCTTTSSSCCCCCCC
T ss_pred             EeCCCcCCCEE----EEEEe---CCCCCCCcEEEEecCCc
Confidence            99877665433    22332   25567888777665543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.88  E-value=1.4e-08  Score=79.67  Aligned_cols=85  Identities=27%  Similarity=0.384  Sum_probs=71.2

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcE-EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF-KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      +..+.+..|..+.|.|.+.+.|.+.+.|++++..+...... ..........|.|.++...|.|.|+|.|.|..|....+
T Consensus        12 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (100)
T 2kdg_A           12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT   91 (100)
T ss_dssp             CCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEE
Confidence            45678999999999999999999999999999988765443 33344455789999999999999999999999998777


Q ss_pred             EEEEEE
Q psy7040         512 AKVTVL  517 (716)
Q Consensus       512 ~~~~v~  517 (716)
                      +.+.+.
T Consensus        92 ~~l~V~   97 (100)
T 2kdg_A           92 VQLDVL   97 (100)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.88  E-value=3.9e-09  Score=96.77  Aligned_cols=120  Identities=16%  Similarity=0.127  Sum_probs=87.5

Q ss_pred             eeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCccce---eeccceeEEEEEEeeEEEEeeeeccCc-ee
Q psy7040         569 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI---QWLLTLTDVTWEISNYLQELHSSLMPI-SL  644 (716)
Q Consensus       569 ~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~---~~~~~~v~l~w~i~~y~v~~~~~~~~~-~~  644 (716)
                      ...+.|.+++..+.+.|+|.|.|..|.......+.|..+|..+....   ...+..+.              |.|.+ .|
T Consensus        83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~--------------l~C~~~~g  148 (214)
T 3jz7_A           83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFK--------------LKCEPKEG  148 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEE--------------EEEECSBC
T ss_pred             cccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEE--------------EEecCCCC
Confidence            37799999999999999999999888665555566766666544111   11123333              66666 44


Q ss_pred             ----eEEEEeCC--eEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         645 ----ESQYLMND--KRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       645 ----~~~W~~~~--~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                          .+.|++++  ..+...  .......|.|.++...|+|.|+|.|.|..|....+..|.|..||
T Consensus       149 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~  214 (214)
T 3jz7_A          149 SLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS  214 (214)
T ss_dssp             CSSCEEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred             CCCCEEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence                89999953  443322  12233699999999999999999999999999999999888543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.88  E-value=2.2e-07  Score=82.47  Aligned_cols=122  Identities=16%  Similarity=0.212  Sum_probs=89.4

Q ss_pred             eEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccC-CCeEEEE
Q psy7040         383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP-IPTKEWL  461 (716)
Q Consensus       383 ~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p-~~~~~W~  461 (716)
                      .+.+.  ...+...|+|.|.|..     + ......+   ..+|.+... .....+..|..+.|.|.+.+.| .+.+.|+
T Consensus        52 ~l~i~--~~~d~G~Y~C~~~n~~-----~-~~~~l~V---~~~P~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~  119 (184)
T 3b5h_A           52 EFKVD--SDDQWGEYSCVFLPEP-----M-GTANIQL---HGPPRVKAV-KSSEHINEGETAMLVCKSESVPPVTDWAWY  119 (184)
T ss_dssp             EEEEC--GGGCCEEEEEEEESTT-----S-CEEEEEE---CCSCCCEES-CSEEEECTTSCEEEEEECCCSSCCCEEEEE
T ss_pred             EEEEe--chhhCeEEEEEEECCc-----C-cEEEEEE---ecCCceeec-CCCcEEcCCCcEEEEEEECCCCCCCeEEEE
Confidence            45555  4667889999999721     1 1111112   235554432 2456788999999999999999 7999999


Q ss_pred             e---CCeE-ecc--CCcEEEEeCCCeEEEEECCCC-CCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         462 C---NDIT-IIS--KDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       462 ~---~~~~-~~~--~~~~~~~~~~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      +   ++.. +..  ..++.+...+....|.|.++. ..|.|.|+|.|.|..|....+..+.|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  181 (184)
T 3b5h_A          120 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  181 (184)
T ss_dssp             ECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEE
Confidence            9   4443 322  356777777778899999999 99999999999999999888777665

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.87  E-value=2.4e-09  Score=86.51  Aligned_cols=74  Identities=22%  Similarity=0.305  Sum_probs=61.3

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG  707 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~  707 (716)
                      |.|.+.|    .+.|++++..+...      .......|.|.++...|+|.|+|.|.|..|....+..|.|..+|.+|..
T Consensus        27 l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~P~~  106 (114)
T 2cqv_A           27 LFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG  106 (114)
T ss_dssp             EEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCCCCCC
Confidence            5566655    89999999887654      1122468999999999999999999999999999999999999999987


Q ss_pred             CeEE
Q psy7040         708 PIQI  711 (716)
Q Consensus       708 p~~~  711 (716)
                      |..+
T Consensus       107 p~~~  110 (114)
T 2cqv_A          107 TPSG  110 (114)
T ss_dssp             CTTS
T ss_pred             Cccc
Confidence            7543

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.86  E-value=1.3e-08  Score=80.84  Aligned_cols=94  Identities=17%  Similarity=0.280  Sum_probs=74.5

Q ss_pred             CCCCCCCCcEEEeee--CCeEEEEecCCCC--CCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         323 NQPGKPGTPEIKDFD--TDFVELAWTPPEQ--NGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~--~~~i~l~W~~p~~--~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      ..|.+|.++.+....  .+.+.|+|.+|..  +.++.+..|.|+|+..+...|.....  ...+++.|.+|.+++.|.|+
T Consensus         6 vkp~pP~~l~v~~~~~~~~~l~lsW~~P~~w~~~~~~~l~Y~v~y~~~~~~~w~~~~~--~~~~~~~l~~L~p~t~Y~~~   83 (109)
T 1uc6_A            6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVEL--SNGTAHTITDAYAGKEYIIQ   83 (109)
T ss_dssp             CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEE--SSCSEEEETTCCSSSCEEEE
T ss_pred             EecCCCcceEEEEcCCCCCEEEEEECCCCCccCCCcEEEEEEEEEEECCCCCcEEEec--ccCCEEEEeCCCCCCEEEEE
Confidence            458889999888654  4789999999864  22336889999999887666764432  35689999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceEe
Q psy7040         399 VLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      |+|.+. |.|.+|+.+.....
T Consensus        84 VRa~~~-g~g~wS~WS~~~~~  103 (109)
T 1uc6_A           84 VAAKDN-EIGTWSDWSVAAHA  103 (109)
T ss_dssp             EECCBS-SSCCCCCCCEEEEE
T ss_pred             EEEEeC-CCCCcCcCCCCeee
Confidence            999996 88888888766554

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.86  E-value=1.5e-07  Score=85.05  Aligned_cols=73  Identities=10%  Similarity=0.085  Sum_probs=55.2

Q ss_pred             cEEEecCCeEEEEEEEe----ccCCCeEEEEeCCeEecc------------CCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         435 DIKVRAGSNFEFDINVI----GEPIPTKEWLCNDITIIS------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~----~~p~~~~~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      .+.+..|+.+.|.|.+.    +.|.+.+.|.+++..+..            ..+..+. ......|.|.++...|.|.|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEE
Confidence            46788999999999985    457789999999876520            1122221 233568999999999999999


Q ss_pred             EEEEcCCCce
Q psy7040         499 LAVKNSWGTD  508 (716)
Q Consensus       499 ~~a~n~~g~~  508 (716)
                      |.|.|..|..
T Consensus        82 C~~~~~~g~~   91 (201)
T 1dr9_A           82 CVVLKYEKDA   91 (201)
T ss_dssp             EEEEECCTTS
T ss_pred             EEEEcCCCCc
Confidence            9999987654

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.86  E-value=1.9e-08  Score=79.55  Aligned_cols=82  Identities=12%  Similarity=0.251  Sum_probs=66.5

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC--------ceEEEeeecCCCCeEEecCCCCCCe
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP--------IWEKCAQTEGDTPKGKVLDLIEGNQ  394 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~--------~~~~~~~~~~~~~~~~i~~l~~~~~  394 (716)
                      ..|.+|.+|.+..++.++++|+|.+|.    +.+.+|+|.|...+..        ........+....+++|.+|.|++.
T Consensus         7 ~~pp~p~~L~v~~~T~~Si~LsW~~p~----g~v~~Y~i~y~~~~~~~~e~~~~~~~~~~~~v~~~~t~~~l~gL~PgT~   82 (112)
T 2cui_A            7 GSRPRLSQLSVTDVTTSSLRLNWEAPP----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTL   82 (112)
T ss_dssp             CCCCCCCCCEEESCCSSCEEEECCCCT----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCE
T ss_pred             CCCCCCCceEEEeecCCeEEEEECCCC----CCccEEEEEEEeCCCCccccccccCcceEEEcCCCcCEEEeCCCCCCCE
Confidence            567789999999999999999999863    2588999999876532        0123344567788999999999999


Q ss_pred             EEEEEEEEeCCCCC
Q psy7040         395 YEFRVLAVNKGGPG  408 (716)
Q Consensus       395 Y~~~v~a~n~~g~~  408 (716)
                      |.|+|+|.+..+.+
T Consensus        83 Y~~~V~A~~~~~~s   96 (112)
T 2cui_A           83 YSLTLYGLRGPHKA   96 (112)
T ss_dssp             EEEEEEEECSSSEE
T ss_pred             EEEEEEEEECCccc
Confidence            99999999876654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.86  E-value=2.4e-08  Score=91.21  Aligned_cols=170  Identities=12%  Similarity=0.055  Sum_probs=104.0

Q ss_pred             cccEEEecC--CeEEEEEEEeccCCCeEEEEeC---CeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         433 LSDIKVRAG--SNFEFDINVIGEPIPTKEWLCN---DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       433 ~~~~~~~~g--~~~~~~~~v~~~p~~~~~W~~~---~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      +..+.+.+|  +.+.|.|.+.+ |.+.+.|++.   +..+.....+....   ...|.|.++...|.|.|+|.|.|..+.
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~---~~~l~I~~v~~~D~G~Y~C~a~n~~~~   89 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDS---KKGFTIPSYMISYAGMVFCEAKINDES   89 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEET---TTEEEEEGGGTTTCSEEEEEEC----C
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccC---CccEEEccCChhcCceEEEEEEECCee
Confidence            356889999  99999999986 7789999884   55444443333222   236999999999999999999985443


Q ss_pred             eee-EEEEEEE---EEEEEEeCCCC----CCCCceeeEEEEEEecCCCceeeeEEEccceeee------e-cc------c
Q psy7040         508 DKG-TAKVTVL---GCSLKWNPPED----DGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVT------I-DN------V  566 (716)
Q Consensus       508 ~~~-s~~~~v~---~v~l~W~~p~~----~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~------~-~~------~  566 (716)
                      ... ...+.+.   ...+.-.++..    .+......|.+...  ..+.+.+.|++.+.....      . ..      .
T Consensus        90 ~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~--p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~  167 (213)
T 2x1w_L           90 YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTE--LNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK  167 (213)
T ss_dssp             EECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEEC--TTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCE
T ss_pred             EEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECC--CCCceEEEEEecCCccceEEEeccccccccCccce
Confidence            222 1444442   12222223221    22332344444332  122234899877654210      0 00      1


Q ss_pred             cceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCC
Q psy7040         567 DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  608 (716)
Q Consensus       567 ~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p  608 (716)
                      .....+.|.+++..+.+.|.|.|.|..|....+..+.|.++|
T Consensus       168 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          168 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             EEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             eeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence            123569999999999999999999999977666666666655

>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens}

Probab=98.86  E-value=1.2e-08  Score=79.47  Aligned_cols=80  Identities=18%  Similarity=0.160  Sum_probs=58.8

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .++..|++..++.+++.|+|.+|...+ ..+..|+|.|.....  .. ......++++|.||+|++.|.|+|+|......
T Consensus         9 s~v~~l~v~~~t~~Sv~LsW~~p~~~~-~~i~~Y~v~~~~~~~--~~-~~~~~~t~~~i~gL~PgT~Y~~~V~A~~~~~~   84 (104)
T 2dle_A            9 IQVFDVTAVNISATSLTLIWKVSDNES-SSNYTYKIHVAGETD--SS-NLNVSEPRAVIPGLRSSTFYNITVCPVLGDIE   84 (104)
T ss_dssp             CBEEEEEEEEECSSCEEEEEEESCSTT-CCSCEEEEEEECSSC--EE-EEEESSSEEECCSCCSSCEEEEEEEEESSSCC
T ss_pred             CCCceEEEEEeecCEEEEEEcCCCCCC-CceEEEEEEEECCCC--eE-EEcCCCCEEEECCCCCCCEEEEEEEEEECCcc
Confidence            344568888999999999999775333 336789999975432  22 22334589999999999999999999965555


Q ss_pred             CCCc
Q psy7040         136 SEPL  139 (716)
Q Consensus       136 ~~~s  139 (716)
                      +.+.
T Consensus        85 ~~p~   88 (104)
T 2dle_A           85 GTPG   88 (104)
T ss_dssp             CBCE
T ss_pred             cCCe
Confidence            4443

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.86  E-value=1e-08  Score=77.94  Aligned_cols=68  Identities=10%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +.+..|+.+.|.|.+.+ |.+.+.|++++..+..+.++.+..++....|.|.++.+.|.|.|+|.|.|.
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            44567999999999966 888999999999999999999999988899999999999999999999664

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A

Probab=98.86  E-value=4.9e-09  Score=79.45  Aligned_cols=77  Identities=19%  Similarity=0.334  Sum_probs=60.8

Q ss_pred             CceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcE--EEecccCCCeEEecCCCCCcEEEEEEEEEecCccCC
Q psy7040          60 PLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESE  137 (716)
Q Consensus        60 ~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~--~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~  137 (716)
                      .+++.+++.+++.|+|.+|.    .++++|+|.|....++.-  ...-....+++.|.||.|++.|.++|.|.+..+.+.
T Consensus        11 ~l~vt~vt~~S~~lsW~~p~----~~v~~Y~I~y~~~~g~~~~~~~~v~g~~~s~~l~~L~PgT~Y~V~v~a~~~~~~S~   86 (95)
T 2h41_A           11 SESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQS   86 (95)
T ss_dssp             TTSCCCCGGGCEEEECCCSC----TTEEEEEEEEEETTTCCCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEE
T ss_pred             EEEEEEeCCCeEEEEECCCC----CCccEEEEEEEeCCCCCcceEEECCCCccEEEECCCCCCCEEEEEEEEEcCCCccc
Confidence            36788999999999999875    349999999988765321  122234468999999999999999999999888776


Q ss_pred             Ccc
Q psy7040         138 PLE  140 (716)
Q Consensus       138 ~s~  140 (716)
                      +..
T Consensus        87 p~s   89 (95)
T 2h41_A           87 LIL   89 (95)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            543

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.86  E-value=1.1e-08  Score=93.47  Aligned_cols=131  Identities=17%  Similarity=0.193  Sum_probs=91.2

Q ss_pred             CeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEE-EeccCCCeEEE
Q psy7040         382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDIN-VIGEPIPTKEW  460 (716)
Q Consensus       382 ~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~-v~~~p~~~~~W  460 (716)
                      ..+.|.++...+.+.|+|.|.|..|....+ ......+..   +|.+.. ......+..|..+.|.|. +.+.|.+.+.|
T Consensus        65 ~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~-~~~~l~V~~---~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W  139 (212)
T 1f97_A           65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGE-VSIHLTVLV---PPSKPT-ISVPSSVTIGNRAVLTCSEHDGSPPSEYSW  139 (212)
T ss_dssp             TEEEESCCCGGGCEEEEEEEEETTSSSEEE-EEEEEEEEB---CCCCCE-EECCSEEETTSCEEEEEECSCCBSCCEEEE
T ss_pred             eeEEEcccCcccCeEEEEEEEccCCCcccE-EEEEEEEEc---CCCCcc-cCCccccCCCCeEEEEEEcccCcCCCEEEE
Confidence            678999999999999999999987722111 111122222   333221 122356889999999999 79999999999


Q ss_pred             EeCCe-EeccCCcE-------EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce--eeEEEEEEE
Q psy7040         461 LCNDI-TIISKDRF-------KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD--KGTAKVTVL  517 (716)
Q Consensus       461 ~~~~~-~~~~~~~~-------~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~--~~s~~~~v~  517 (716)
                      ++++. .+......       ..........|.|.++...|.|.|+|.|.|..|..  +..+.+.+.
T Consensus       140 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          140 FKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             EETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             EeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence            99998 76543321       22333445689999999999999999999999987  444444443

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.85  E-value=1.1e-08  Score=91.90  Aligned_cols=128  Identities=21%  Similarity=0.340  Sum_probs=94.8

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEE
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE  459 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~  459 (716)
                      +...+.|.++...+.+.|+|.+.|..|..........+.     .+|.+.. .+....+..|..+.|.|.+.+.|.+.+.
T Consensus        60 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-----~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~v~  133 (192)
T 2iep_A           60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK-----MKPKITR-PPINVKIIEGLKAVLPCTTMGNPKPSVS  133 (192)
T ss_dssp             GGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEE-----EEEEEEE-CCCCEEEETTSCEEECCEEEEESCCEEE
T ss_pred             CccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEE-----eCCcccc-CCcceEEeCCCcEEEEEEEeccCCceEE
Confidence            335689999999999999999999876532211111111     1333332 2345778899999999999999999999


Q ss_pred             EEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce-eeEEEEEE
Q psy7040         460 WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTV  516 (716)
Q Consensus       460 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-~~s~~~~v  516 (716)
                      |++++..+....++.+...+   .|.|.++...|.|.|+|.|.|..|.. +....+.+
T Consensus       134 W~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  188 (192)
T 2iep_A          134 WIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV  188 (192)
T ss_dssp             EEETTEECCCCSSEEECTTS---CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEeCCEEccCCCcEEEecCC---cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            99999988777666554332   69999999999999999999999877 33454444

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.85  E-value=1.6e-08  Score=81.18  Aligned_cols=78  Identities=18%  Similarity=0.302  Sum_probs=64.8

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCC-------CeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD-------KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      .+..+.+.|.+.|.|.|.+.|++++..+....+..+....       ....|.|.++.+.|.|.|+|.|.|..|....++
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            4567889999999999999999999999877765443221       246799999999999999999999999987777


Q ss_pred             EEEEE
Q psy7040         513 KVTVL  517 (716)
Q Consensus       513 ~~~v~  517 (716)
                      .+.+.
T Consensus        94 ~l~v~   98 (126)
T 1he7_A           94 MAAFM   98 (126)
T ss_dssp             EECCC
T ss_pred             EEEEE
Confidence            66655

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.85  E-value=9e-09  Score=91.61  Aligned_cols=132  Identities=8%  Similarity=0.080  Sum_probs=82.4

Q ss_pred             eeEEEccceeeeeccccceeEEEEcC-CCCCCeEEEEEEEEcCCCCCccceeeeccC--CCCC-Cc-----------cce
Q psy7040         551 IKWIRTNDKRVTIDNVDYFTKITIRP-LQRSDTAQYTVTATNSQGKDQVFIEVVVTD--KPSA-PE-----------GPI  615 (716)
Q Consensus       551 ~~w~~~~~~~~~~~~~~~~~~~~i~~-L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~--~p~~-~~-----------~~~  615 (716)
                      +.|++.+......    ....+.|.+ +...+.+.|+|.|.|..|.......+.|..  +|.. +.           .+.
T Consensus        29 i~W~k~g~~l~~~----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  104 (186)
T 1jbj_A           29 LKWEKNGQELPQK----HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDG  104 (186)
T ss_dssp             CEEEETTEEECSC----CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTC
T ss_pred             eEEEECCEECCCC----CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecccccccccccccccccCCccccc
Confidence            7788876654321    236899999 999999999999999988744333333311  1110 00           000


Q ss_pred             eec---cceeEEEEEEeeEEEEeeeeccCcee-eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         616 QWL---LTLTDVTWEISNYLQELHSSLMPISL-ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       616 ~~~---~~~v~l~w~i~~y~v~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      ...   .....+.--..|-.+   .|.|.+.. .+.|+++|..+.... .....|.|.++...|+|.|+|.|.|..|..
T Consensus       105 ~~~~~~~~~~~~~~~~~G~~v---~l~C~~p~p~i~W~k~g~~i~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          105 SQTNKAKNLVQVDGSRGDGSV---LLTCGLTDKTIKWLKDGSIISPLN-ATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSCCCCSSCCEECCCSSSCEE---EEECSSSCSCEEEEETTEECCCSS-CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             cccccccccccceecCCCCeE---EEEeeCCCCeEEEEECCEECcccC-CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            000   000000000012222   26777644 999999999986432 244789999999999999999999998865

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B*

Probab=98.84  E-value=2.8e-07  Score=82.52  Aligned_cols=138  Identities=12%  Similarity=0.104  Sum_probs=91.0

Q ss_pred             ceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeee-CCeEEEEecCCCCCCC-ccceE
Q psy7040         281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFD-TDFVELAWTPPEQNGG-SPIVG  358 (716)
Q Consensus       281 ~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~-~~~i~l~W~~p~~~~~-~~i~~  358 (716)
                      ......++.....+.|.|.+    |... +... .+. ......|.+|.++.+.... ...+.|+|.+|....+ .....
T Consensus        76 y~~~~~~~~l~~~~~i~V~l----G~~~-S~~~-~f~-l~~iVKPdPP~nLtv~~~~~~~~l~LsW~~P~~~~~~~~~L~  148 (223)
T 3up1_A           76 YFIETKKFLLIGKSNICVKV----GEKS-LTCK-KID-LTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLM  148 (223)
T ss_dssp             EEEEESCBCCSSEEEEEEEE----TTEE-EEEE-EEE-GGGSBCCCCCEEEEEEEETTTTEEEEEEECGGGGCSSSCCEE
T ss_pred             EEeecCCEEEEeccEEEEEc----CCce-eccE-EEE-ecceEEcCCCcceEEEEEcCCCCEEEEECCCCCCCCcceeEE
Confidence            44456778888888888873    3221 1111 122 2233668899999988664 4679999999754332 22578


Q ss_pred             EEEEEeecC-CCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC-CCCCCCCCCCCceEeecCCCCC
Q psy7040         359 YIIEKKEKY-SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK-GGPGEPSDPTAPHIARAKKVSP  426 (716)
Q Consensus       359 y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~-~g~~~~s~~~~~~~~~~~~~~P  426 (716)
                      |.|+|+... ...|.... .......+.+.+|.|++.|.|+|||... .+.|.+|+.+.......+..+|
T Consensus       149 YEVrYr~~~~~~~W~~v~-~~~t~~~i~l~~L~Pgt~Y~vqVR~r~~~~~~G~WSeWS~~~~~~T~~~~P  217 (223)
T 3up1_A          149 HDVAYRQEKDENKWTHVN-LSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFRTPEINN  217 (223)
T ss_dssp             EEEEEEESSCSSCCEEEE-ESSSEEEEEGGGSCTTCEEEEEEEEEECSSCCBCCCCCCCCEEEECCCCC-
T ss_pred             EEEEEEeCCCCCceEEEE-ecCceeEEeccccCCCcEEEEEEEEeeCCCCCCCCCCCCCCeEEECCCCCC
Confidence            999999875 46787543 2222234556799999999999999985 4556677777666666655555

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.84  E-value=5.5e-09  Score=82.77  Aligned_cols=84  Identities=23%  Similarity=0.453  Sum_probs=76.1

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +..+.+..|..+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++...|.|.|+|.|.|..|....++
T Consensus        21 p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  100 (106)
T 1nct_A           21 PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEF  100 (106)
T ss_dssp             CCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEE
T ss_pred             CCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEE
Confidence            45688999999999999999999999999999988888888888777788999999999999999999999999988877


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+.|
T Consensus       101 ~l~V  104 (106)
T 1nct_A          101 TLTI  104 (106)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C*

Probab=98.84  E-value=3.1e-07  Score=82.27  Aligned_cols=177  Identities=11%  Similarity=0.157  Sum_probs=113.5

Q ss_pred             eEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCC--CCCeEEccc---cCcccceEEEcC--CCCCCeEEEEEEEEc
Q psy7040         230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA--TGRWTPAGE---TEGPVTGLEVEG--LIPNHKYKFRVRAVN  302 (716)
Q Consensus       230 ~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~--~~~~~~~~~---~~~~~~~~~i~~--L~p~~~y~~~v~a~n  302 (716)
                      +.........++.+|.+..  .. ....|.+.+.-..  ...+..+..   ..+....+.+..  +.....|.+.|.  +
T Consensus         5 l~C~~~~~~~~~C~W~~~~--~~-~~~~y~l~y~~~~~~~~~~~~C~~y~~~~~~~~~C~~~~~~~~~~~~~~i~v~--~   79 (199)
T 2b5i_C            5 VQCFVFNVEYMNCTWQSSS--EP-QPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQ--D   79 (199)
T ss_dssp             CEEEEETTTEEEEECCCCS--SS-SCCCCEEEEEETTSSSCCCEECSSEEEETTEEEEEEEEGGGCCTTSCEEEEEE--C
T ss_pred             CEEEECCCcEEEEEecCCC--cC-CCceEEEEEEECCCCCCccccCCCccccCCceeEEEECCcccccceEEEEEEE--e
Confidence            6666666789999999633  11 2356777665332  345666643   122233455544  444556666664  3


Q ss_pred             CCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCC
Q psy7040         303 KQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTP  382 (716)
Q Consensus       303 ~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~  382 (716)
                      ..|... +..  ..........|.+|.++.+.......+.|+|.+|...   ....|.|+|+...+..|....  .....
T Consensus        80 ~~g~~~-s~~--~~~~~~~iVkP~pP~~l~~~~~~~~~l~l~W~~p~~~---~~l~yev~y~~~~~~~w~~~~--~~~~~  151 (199)
T 2b5i_C           80 PREPRR-QAT--QMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTEQS--VDYRH  151 (199)
T ss_dssp             SSCTTC-EEE--EEECGGGSEECCCCEEEEEEEEETTEEEEEEECSSCS---TTCEEEEEEEETTCSSCEEEE--ECSSC
T ss_pred             CCccee-cce--EEEchHHceecCCCcEEEEEECCCCCEEEEECCCCCC---CceEEEEEEeecCCcccEEEe--ccCce
Confidence            333221 111  1111112235889999999888888999999997522   245899999987766787654  23467


Q ss_pred             eEEecCCCCCCeEEEEEEEEeCC---CCCCCCCCCCceEe
Q psy7040         383 KGKVLDLIEGNQYEFRVLAVNKG---GPGEPSDPTAPHIA  419 (716)
Q Consensus       383 ~~~i~~l~~~~~Y~~~v~a~n~~---g~~~~s~~~~~~~~  419 (716)
                      .+.|.+|.|++.|.|+|+|....   +.|.+|+.+.....
T Consensus       152 ~~~l~~l~p~~~Y~vqVR~~~~~~~~~~g~WSeWS~~~~~  191 (199)
T 2b5i_C          152 KFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHW  191 (199)
T ss_dssp             EEEECSCCTTSCEEEEEEEECCSSSCCCCCCCCCCCCEEC
T ss_pred             EEEecCCCCCcEEEEEEEEeccCCcCcCCeECCCCCCEEe
Confidence            89999999999999999999864   35677777665543

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=2.9e-08  Score=79.44  Aligned_cols=92  Identities=27%  Similarity=0.453  Sum_probs=74.3

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      +|.+.. .+..+.+..|..+.|.|.+.+.|.+.+.|++++..+.. ..++.+... .....|.|.++...|.|.|+|.|.
T Consensus         8 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm2_A            8 APFFEM-KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA   86 (110)
T ss_dssp             CCCBSS-CCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEE
T ss_pred             CCEEEe-cCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEE
Confidence            444442 34567899999999999999999999999999988865 456666655 344589999999999999999999


Q ss_pred             cCCCceeeEEEEEEE
Q psy7040         503 NSWGTDKGTAKVTVL  517 (716)
Q Consensus       503 n~~g~~~~s~~~~v~  517 (716)
                      |..|.......+.+.
T Consensus        87 N~~g~~~~~~~l~V~  101 (110)
T 2dm2_A           87 NPQGRISCTGRLMVQ  101 (110)
T ss_dssp             CTTCCEEECCCEEEE
T ss_pred             ECCCeEEEEEEEEEE
Confidence            999987766665554

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.83  E-value=4e-08  Score=88.89  Aligned_cols=133  Identities=19%  Similarity=0.246  Sum_probs=96.8

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCc-eEeec---CCCCCcccccccccEEEecCCeEEEEEEEeccCC
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP-HIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI  455 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~-~~~~~---~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~  455 (716)
                      ....+.|.++...+...|+|.+.|..+.......... .....   ...+|.+.... ....+..|..+.|.|.+.+.|.
T Consensus        64 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~  142 (201)
T 3s97_C           64 TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF-KDVYALMGQNVTLECFALGNPV  142 (201)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEEC-CCEEEETTCCEEEEEEEEEESC
T ss_pred             CCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecC-CceEEecCCcEEEEEEccCCCC
Confidence            4567999999999999999999997654322111111 11111   11244443332 2678899999999999999999


Q ss_pred             CeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       456 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      +.+.|++++..+.....  +..  ....|.|.++...|.|.|+|.|.|..|....+..+.|.
T Consensus       143 p~v~W~~~~~~~~~~~~--~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          143 PDIRWRKVLEPMPSTAE--IST--SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             CEEEEEETTBCCCTTCE--EET--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CceEEEeCCCcCCCcee--ecC--CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            99999999987754422  222  24489999999999999999999999998888777663

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.83  E-value=2.3e-08  Score=89.96  Aligned_cols=124  Identities=11%  Similarity=-0.023  Sum_probs=78.5

Q ss_pred             CCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeE
Q psy7040         379 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK  458 (716)
Q Consensus       379 ~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~  458 (716)
                      .....+.|.++...+.+.|+|.|.|..|.+..+...... +.....+|.+...  ....+..|+.+.|.|.+.+.| +.+
T Consensus        55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~-V~~~~~~p~i~~~--~~~~v~~G~~v~L~C~~~~~p-~~~  130 (196)
T 2d3v_A           55 KNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELV-VTGFYNKPTLSAL--PSPVVTSGENVTLQCGSRLRF-DRF  130 (196)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEE-EECSSCCCEEEC-------------CEEEEEESSCC-SEE
T ss_pred             ccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEE-ecCCCCCCeEEcc--CCccccCCCcEEEEEEcCCCC-CEE
Confidence            345678999999999999999999987765444333222 2222235555422  224688999999999999998 899


Q ss_pred             EEEeCCeEeccCCcEEEEe--CCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         459 EWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       459 ~W~~~~~~~~~~~~~~~~~--~~~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      .|++++..+..........  ......|.|.++...|.|.|+|.|.|..+
T Consensus       131 ~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          131 ILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             EEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            9999998763221111111  12346899999999999999999999765

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.82  E-value=2.2e-08  Score=77.46  Aligned_cols=86  Identities=20%  Similarity=0.364  Sum_probs=71.6

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +|.+. ..+..+.+..|+.+.|.|.+.+.| +.+.|++++..+....++.+.    ...|.|.++...|.|.|+|.|.|.
T Consensus         9 pp~~~-~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~   82 (95)
T 2ckn_A            9 PWGVP-VEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----GEEVEVRDSIPADSGLYACVTSSP   82 (95)
T ss_dssp             SCCBT-TBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----SSEEEESSCCGGGSEEEEEEEEET
T ss_pred             CCEEE-cCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----CCEEEECCCChHHCEEEEEEeccC
Confidence            44443 335678899999999999999997 799999999888766666553    348999999999999999999999


Q ss_pred             CCceeeEEEEEE
Q psy7040         505 WGTDKGTAKVTV  516 (716)
Q Consensus       505 ~g~~~~s~~~~v  516 (716)
                      .|....+..+.+
T Consensus        83 ~g~~~~~~~l~V   94 (95)
T 2ckn_A           83 SGSDTTYFSVNV   94 (95)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            998887777665

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.81  E-value=8.6e-08  Score=86.19  Aligned_cols=160  Identities=11%  Similarity=0.062  Sum_probs=101.9

Q ss_pred             eCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEe-eecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCC
Q psy7040         337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCA-QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA  415 (716)
Q Consensus       337 ~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~  415 (716)
                      .+..++|.|....     +...|..+ +........... ........+.|.++...+...|+|.|.|..|.+..+....
T Consensus        18 ~G~~v~L~C~~~~-----~~~~~~w~-k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~   91 (196)
T 3p2t_A           18 WGNSVTIWCQGTL-----EAREYRLD-KEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLE   91 (196)
T ss_dssp             TTCCEEEEEECCT-----TCCEEEEE-ETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEE
T ss_pred             CCCcEEEEeeCCC-----CCCEEEEE-ECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEE
Confidence            4667888887632     12233322 222211121111 1123456799999999999999999999887544444332


Q ss_pred             ceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcE-EEEeCCCeEEEEECCCCCCCc
Q psy7040         416 PHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF-KIVNDDKSTKLKVFDSKRGDS  494 (716)
Q Consensus       416 ~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~  494 (716)
                      .. +.....+|.+....  ...+..|+.+.|.|.+.+. .+.+.|++++..+...... ..........|.|.++...|.
T Consensus        92 l~-V~~~~~~p~~~~~~--~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  167 (196)
T 3p2t_A           92 LV-MTGAYSKPTLSALP--SPLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHG  167 (196)
T ss_dssp             EE-EECSSCCCEEEEES--CSEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGC
T ss_pred             EE-ecCCCCCCEEEeCC--cceecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCC
Confidence            22 22223345543221  2267899999999999874 4689999999876443322 222223456899999999999


Q ss_pred             eeEEEEEEcCCC
Q psy7040         495 GIYTLAVKNSWG  506 (716)
Q Consensus       495 ~~y~~~a~n~~g  506 (716)
                      |.|+|.|.|..+
T Consensus       168 G~Y~C~a~n~~~  179 (196)
T 3p2t_A          168 GTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEEEECGGG
T ss_pred             CeEEEEEEcCCC
Confidence            999999999876

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.81  E-value=2.6e-08  Score=89.31  Aligned_cols=128  Identities=13%  Similarity=0.178  Sum_probs=91.9

Q ss_pred             CCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeE
Q psy7040         379 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK  458 (716)
Q Consensus       379 ~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~  458 (716)
                      .....+.|.++...+.+.|+|.+.|..|.. .+. ......   ..+|.+. ..+....+..|..+.|.|.+.+.|.+.+
T Consensus        59 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~-~~~l~v---~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~v  132 (191)
T 1epf_A           59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQ-SEA-TVNVKI---FQKLMFK-NAPTPQEFKEGEDAVIVCDVVSSLPPTI  132 (191)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEEETTTEE-EEE-EEEEEE---ECCSEEE-ECCSSEECCTTSCEEECCEEECSSCCEE
T ss_pred             CCceEEEEccCCcccCEEEEEEEEcCCCcc-eEE-EEEEEe---ecCceEe-cCCCcEeecCCCeEEEEEEECCCCCCEE
Confidence            345678999999999999999999987521 111 111111   1234433 2234567889999999999999999999


Q ss_pred             EEEeCCeEeccCC--cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE
Q psy7040         459 EWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  515 (716)
Q Consensus       459 ~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~  515 (716)
                      .|++++..+....  ++.+..   ...|.|.++...|.|.|+|.|.|..|.......+.
T Consensus       133 ~W~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~  188 (191)
T 1epf_A          133 IWKHKGRDVILKKDVRFIVLS---NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ  188 (191)
T ss_dssp             EEEETTEEGGGGCCTTEEECT---TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEE
T ss_pred             EEEECCEEeeccCCceEEEec---CCeEEECCCChhhCEEEEEEEEEecceeEEEEEEE
Confidence            9999998876432  333322   22699999999999999999999887665554443

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.81  E-value=8.5e-08  Score=85.67  Aligned_cols=86  Identities=14%  Similarity=0.090  Sum_probs=70.5

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      +.+|.++.+...+.+++.|+|.+|.    +.+.+|+|.|...+...+..........++++|.+|.|++.|.|+|+|.+.
T Consensus       104 ~~~P~~l~v~~~t~~si~l~W~~p~----~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~gL~p~t~Y~~~V~A~~~  179 (195)
T 2qbw_A          104 SSVPTNLEVVAATPTSLLISWDASY----YGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSD  179 (195)
T ss_dssp             CCSSCCCEEEEEETTEEEEECCCCC----SSCSEEEEEEEETTCCSCCEEEEEETTCSEEEECSCCTTCEEEEEEEEESS
T ss_pred             CCCCcccEEEeCCCCEEEEEEeCCC----CCccEEEEEEEECCCCCcceEEEeCCCCCEEEeCCCCCCCEEEEEEEEEeC
Confidence            4567899999999999999999974    258999999987654443334445667799999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy7040         405 GGPGEPSDPT  414 (716)
Q Consensus       405 ~g~~~~s~~~  414 (716)
                      .|.|+.|.+.
T Consensus       180 ~G~g~~S~~v  189 (195)
T 2qbw_A          180 YYGSHHYSPI  189 (195)
T ss_dssp             TTSSCBCCCE
T ss_pred             CccCCCCCCE
Confidence            9999886653

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.79  E-value=9.3e-08  Score=77.09  Aligned_cols=92  Identities=22%  Similarity=0.356  Sum_probs=74.8

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeCC-CeEEEEECCCCCCCceeEEEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      +|.+. ..+..+.+..|..+.|.|.+.+.|.+.+.|++++..+.. ..++.+...+ ....|.|.++...|.|.|+|.|.
T Consensus        15 ~p~f~-~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   93 (116)
T 2kkq_A           15 APMFI-YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV   93 (116)
T ss_dssp             CCCBS-SCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEE
T ss_pred             CCeEE-eCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEE
Confidence            44443 335568899999999999999999999999999988874 4667666554 34589999999999999999999


Q ss_pred             cCCCceeeEEEEEEE
Q psy7040         503 NSWGTDKGTAKVTVL  517 (716)
Q Consensus       503 n~~g~~~~s~~~~v~  517 (716)
                      |..|.....+.+.+.
T Consensus        94 N~~G~~~~~~~l~V~  108 (116)
T 2kkq_A           94 NEAGVTTCNTRLDVT  108 (116)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEEEEe
Confidence            999988776666554

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.79  E-value=1.2e-07  Score=88.63  Aligned_cols=65  Identities=11%  Similarity=0.030  Sum_probs=44.8

Q ss_pred             eccCcee---eEEEEeCCeEeeecc-------cceeeEEEEccCCCCCcEEEEEEEEcCCCC-----ceeeEEEEEecCC
Q psy7040         638 SLMPISL---ESQYLMNDKRVTIDN-------VDYFTKITIRPLQRSDTAQYTVTATNSQGK-----DQVFIEVVVTDKP  702 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~~-------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~-----~~~s~~l~v~~~p  702 (716)
                      |.|.+.+   .+.|+|+|..+....       ......|.|.++.  |+|.|+|.|.|..+.     .+....|.|..+|
T Consensus       126 L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p  203 (257)
T 1b6u_A          126 LSCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNP  203 (257)
T ss_dssp             EEEECSSCCSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC
T ss_pred             EEEeCCCCCcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccC
Confidence            4455444   889999998765431       1235789999998  999999999986432     2344667888776


Q ss_pred             CC
Q psy7040         703 SA  704 (716)
Q Consensus       703 ~~  704 (716)
                      ..
T Consensus       204 ~~  205 (257)
T 1b6u_A          204 SN  205 (257)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.78  E-value=1.7e-08  Score=89.11  Aligned_cols=158  Identities=15%  Similarity=0.097  Sum_probs=101.3

Q ss_pred             ccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      ..+.+.+|+.+.|.|.+.+.+.+ .+.|++++..+..          ....|.|.++...|.|.|+|.+.|..+......
T Consensus        12 ~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~~l   81 (176)
T 1f2q_A           12 PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE----------TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYL   81 (176)
T ss_dssp             SCSEEETTCCEEEECCTTCC----CCEEEETTEECSC----------CSSEEEECSCCGGGCEEEEEECTTSSCCCCEEE
T ss_pred             CCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC----------CceEEEEeccceecCEEEEEEcCCccccccEEE
Confidence            34678999999999999888875 6999999987643          245899999999999999999998776544333


Q ss_pred             EEEEEEEEEEEeCCC--CCCCCceeeEEEEEEe-cCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEE
Q psy7040         513 KVTVLGCSLKWNPPE--DDGGAPIEYYMVEKME-TDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTA  589 (716)
Q Consensus       513 ~~~v~~v~l~W~~p~--~~~~~~i~~y~v~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a  589 (716)
                      .+......+.- +..  ..+..    ..+.... ...+.+.+.|++.+....   .......+.|.++...+.+.|+|.|
T Consensus        82 ~V~~~~~~~~~-~~~~~~~g~~----~~l~C~~~~~~p~~~~~W~~~g~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a  153 (176)
T 1f2q_A           82 EVFSDWLLLQA-SAEVVMEGQP----LFLRCHGWRNWDVYKVIYYKDGEALK---YWYENHNISITNATVEDSGTYYCTG  153 (176)
T ss_dssp             EEECSSEEEEE-SCSEEETTSC----EEEEEEEGGGCCEEEEEEEETTEECC---SCCCSSEEEESSCCGGGCEEEEEEE
T ss_pred             EEeCcceeecC-CcceeeCCCC----EEEEEEecCCCCceEEEEEECCEEEe---eecCCCeEEECCCCcccCEEEEEEE
Confidence            33211111111 111  11122    2233332 223345699999876442   1223478999999999999999999


Q ss_pred             EcCCCC-CccceeeeccCCCC
Q psy7040         590 TNSQGK-DQVFIEVVVTDKPS  609 (716)
Q Consensus       590 ~n~~G~-~~~s~~~~v~~~p~  609 (716)
                      .|..|. ......+.|..+|.
T Consensus       154 ~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          154 KVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EETTEEEECCCEEEEEECSCC
T ss_pred             EeCCcceEecCEEEEEecCCC
Confidence            997442 22233444665553

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.78  E-value=4.7e-08  Score=76.99  Aligned_cols=72  Identities=22%  Similarity=0.369  Sum_probs=64.2

Q ss_pred             cccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCC--cEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         431 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       431 ~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      ..+.++.+..|..+.|.|.+.+ |.+.+.|++++..+....  ++.+..++....|.|.++...|.|.|+|.|.|
T Consensus        12 ~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A           12 KQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             BCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             ccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            4456788999999999999987 679999999999988777  77888887888999999999999999999987

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.78  E-value=2.1e-08  Score=91.66  Aligned_cols=152  Identities=7%  Similarity=-0.052  Sum_probs=95.6

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeE--EEEECCCCCCCceeEEEEEEcCCCceee--E
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFDSKRGDSGIYTLAVKNSWGTDKG--T  511 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~l~i~~l~~~~~~~y~~~a~n~~g~~~~--s  511 (716)
                      ..+.+|+.+.|.|.+.+ +.+.+.|++++..+...... ........  .|.|.++...|.|.|+|.|.|..|....  .
T Consensus        18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~   95 (218)
T 1uct_A           18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDT   95 (218)
T ss_dssp             SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCC
T ss_pred             CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCC
Confidence            36889999999999987 67899999987655322111 11112234  8999999999999999999998764433  3


Q ss_pred             EEEEEE----EEEEEEeCCC--CCCCCceeeEEEEEEecCCCceeeeEEEccceeeee-ccccceeEEEEcCCCCCCeEE
Q psy7040         512 AKVTVL----GCSLKWNPPE--DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTI-DNVDYFTKITIRPLQRSDTAQ  584 (716)
Q Consensus       512 ~~~~v~----~v~l~W~~p~--~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~i~~L~~~~~y~  584 (716)
                      ..+.+.    ...+.-.+..  ..+......|.    ....+.+...|++.+...... ........+.|.++...+.+.
T Consensus        96 ~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~----~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~  171 (218)
T 1uct_A           96 LELVVTGLYGKPFLSADRGLVLMPGENISLTCS----SAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGI  171 (218)
T ss_dssp             EEEEEECSSCCCEEEESSCSEECTTCCCEEEEE----CSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEE
T ss_pred             EEEEEcCcccCCEEEeCCCCccCCCCCEEEEEe----CCCCCCCEEEEEECCCcccccccCCCccCEEEEccCCcccCEE
Confidence            444443    1122211110  12222222232    222334558999987644311 112234789999999999999


Q ss_pred             EEEEEEcCC
Q psy7040         585 YTVTATNSQ  593 (716)
Q Consensus       585 ~~v~a~n~~  593 (716)
                      |+|.|.|..
T Consensus       172 Y~C~a~n~~  180 (218)
T 1uct_A          172 YRCYGWYNR  180 (218)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEcCC
Confidence            999999864

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1

Probab=98.77  E-value=3.1e-08  Score=75.19  Aligned_cols=80  Identities=20%  Similarity=0.295  Sum_probs=62.3

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .+|.+|.++.+.....+++.|+|.++..+ + .+.+|.|+..  +  .  ...  .....++.+.+|.+++.|.|+|+|.
T Consensus         2 ~~P~~P~~l~~~~~~~~sv~L~W~~~~~~-~-~i~~Y~v~~~--~--~--~~~--~~~~~~~~~~~L~~~t~Y~~~V~A~   71 (88)
T 1k85_A            2 MAPTAPTNLASTAQTTSSITLSWTASTDN-V-GVTGYDVYNG--T--A--LAT--TVTGTTATISGLAADTSYTFTVKAK   71 (88)
T ss_dssp             CSCCCCEEEEEEEECSSCEEEEEECCSCC-S-SEEEEEEEES--S--S--EEE--EESSSEEEECCCCSSCEEEEEEEEE
T ss_pred             cCcCCCCccEEEeccCCEEEEEECCCCCC-C-CccEEEEEEC--C--E--EEe--ecCCCEEEeCCCCCCCEEEEEEEEE
Confidence            35888999999999999999999997643 3 4899999841  1  1  111  2345789999999999999999999


Q ss_pred             eCCCC-CCCCC
Q psy7040         403 NKGGP-GEPSD  412 (716)
Q Consensus       403 n~~g~-~~~s~  412 (716)
                      |..|. +..|.
T Consensus        72 n~~G~~s~~S~   82 (88)
T 1k85_A           72 DAAGNVSAASN   82 (88)
T ss_dssp             ETTTEECCCCC
T ss_pred             eCCCCcCCCCC
Confidence            99987 55544

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.77  E-value=1.7e-08  Score=89.04  Aligned_cols=129  Identities=12%  Similarity=0.056  Sum_probs=86.5

Q ss_pred             eeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCC---CCccceeeccceeEEEEE
Q psy7040         551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS---APEGPIQWLLTLTDVTWE  627 (716)
Q Consensus       551 ~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~---~~~~~~~~~~~~v~l~w~  627 (716)
                      +.|++.+....     .....+.|.++...+.+.|+|.|.|..+..  ...+.|..++.   .+. .....+..+.    
T Consensus        37 i~W~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~--~~~l~V~~~~~~~~~~~-~~~~~g~~~~----  104 (176)
T 1f2q_A           37 TKWFHNGSLSE-----ETNSSLNIVNAKFEDSGEYKCQHQQVNESE--PVYLEVFSDWLLLQASA-EVVMEGQPLF----  104 (176)
T ss_dssp             CEEEETTEECS-----CCSSEEEECSCCGGGCEEEEEECTTSSCCC--CEEEEEECSSEEEEESC-SEEETTSCEE----
T ss_pred             EEEEECCeECC-----CCceEEEEeccceecCEEEEEEcCCccccc--cEEEEEeCcceeecCCc-ceeeCCCCEE----
Confidence            66777665432     124889999999999999999998865433  23333432221   011 1111233444    


Q ss_pred             EeeEEEEeeeeccCce-e----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCC-ceeeEEEEEecC
Q psy7040         628 ISNYLQELHSSLMPIS-L----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK-DQVFIEVVVTDK  701 (716)
Q Consensus       628 i~~y~v~~~~~~~~~~-~----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~-~~~s~~l~v~~~  701 (716)
                                |.|.+. +    .+.|+++|..+...  .....|.|.++..+|+|.|+|.|.|..|. .+....|.|..+
T Consensus       105 ----------l~C~~~~~~p~~~~~W~~~g~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  172 (176)
T 1f2q_A          105 ----------LRCHGWRNWDVYKVIYYKDGEALKYW--YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA  172 (176)
T ss_dssp             ----------EEEEEGGGCCEEEEEEEETTEECCSC--CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred             ----------EEEEecCCCCceEEEEEECCEEEeee--cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecC
Confidence                      455553 2    88999999987532  23478999999999999999999997443 355688999887


Q ss_pred             CC
Q psy7040         702 PS  703 (716)
Q Consensus       702 p~  703 (716)
                      |.
T Consensus       173 p~  174 (176)
T 1f2q_A          173 PR  174 (176)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.77  E-value=1.1e-08  Score=79.73  Aligned_cols=63  Identities=17%  Similarity=0.312  Sum_probs=52.8

Q ss_pred             eccCcee----eEEEEeCCeEeeecc--------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN--------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~--------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |.|.+.|    .+.|+++|+.+....        ......|.|.++...|+|.|+|.|.|..|..+.++.|.|+.
T Consensus        25 l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           25 VACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            6666666    899999999886541        22336899999999999999999999999999999999875

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.77  E-value=4.1e-08  Score=91.81  Aligned_cols=136  Identities=15%  Similarity=0.203  Sum_probs=97.7

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEE
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE  459 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~  459 (716)
                      ....+.|.++...+.+.|+|.+.|..|....+  .........+.+|.+.........+..|..+.|.|.+.+.|.+.+.
T Consensus        70 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~  147 (241)
T 3grw_A           70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQT--YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ  147 (241)
T ss_dssp             GGTEEEECSCCGGGCEEEEEEEEETTEEEEEE--EEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEE
T ss_pred             cceEEEEEeCCcccCEEEEEEEeecCCceEEE--EEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEE
Confidence            45679999999999999999999977643211  1111112222344444444566778899999999999999999999


Q ss_pred             EEe----CCeEeccCCcEEEE--------eCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         460 WLC----NDITIISKDRFKIV--------NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       460 W~~----~~~~~~~~~~~~~~--------~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      |++    ++..+.........        .......|.|.++...|.|.|+|.|.|..|....+..+.+.
T Consensus       148 W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  217 (241)
T 3grw_A          148 WLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH  217 (241)
T ss_dssp             EEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-
T ss_pred             EEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEec
Confidence            999    77666543332111        11235679999999999999999999999998877766665

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.76  E-value=5.6e-08  Score=76.06  Aligned_cols=88  Identities=15%  Similarity=0.240  Sum_probs=71.9

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +|.+.......+.+..|+.+.|.|.+. .|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|   
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a---   82 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA---   82 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE---
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE---
Confidence            455543333346889999999999998 7899999999999998888888888888889999999999999999999   


Q ss_pred             CCceeeEEEEEEE
Q psy7040         505 WGTDKGTAKVTVL  517 (716)
Q Consensus       505 ~g~~~~s~~~~v~  517 (716)
                       |....++.+.+.
T Consensus        83 -g~~~~~~~l~V~   94 (100)
T 2yuv_A           83 -GDEKCSTELFVR   94 (100)
T ss_dssp             -TTEEEEEEEEEC
T ss_pred             -CCceEEEEEEEe
Confidence             555555555543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.76  E-value=7.2e-09  Score=92.24  Aligned_cols=145  Identities=14%  Similarity=0.105  Sum_probs=93.7

Q ss_pred             EecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECC-CCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       438 ~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      ...|+.+.|.|.+.+ + +.+.|++++..+...         ....|.|.+ +...|.|.|+|.|.|..|.......+.+
T Consensus        11 ~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~---------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v   79 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-D-ENLKWEKNGQELPQK---------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARV   79 (186)
T ss_dssp             EEETTEEEEECSSCC-C-TTCEEEETTEEECSC---------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCC
T ss_pred             EeCCcEEEEEEeCCC-C-CceEEEECCEECCCC---------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEE
Confidence            467999999999987 4 349999999887553         133799999 9999999999999999988554444433


Q ss_pred             EEEE-EEE----------e-CC----CCCC-------CCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEE
Q psy7040         517 LGCS-LKW----------N-PP----EDDG-------GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKIT  573 (716)
Q Consensus       517 ~~v~-l~W----------~-~p----~~~~-------~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  573 (716)
                      .... -..          . ++    ....       .....+-.+...-.. +.+.+.|++.+......  ......+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~-p~p~i~W~k~g~~i~~~--~~~~~~L~  156 (186)
T 1jbj_A           80 GSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL-TDKTIKWLKDGSIISPL--NATKNTWN  156 (186)
T ss_dssp             CSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS-SCSCEEEEETTEECCCS--SCCSSCCE
T ss_pred             ecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC-CCCeEEEEECCEECccc--CCCcceEE
Confidence            2000 000          0 00    0000       000011111111111 34559999988765421  11347899


Q ss_pred             EcCCCCCCeEEEEEEEEcCCCCC
Q psy7040         574 IRPLQRSDTAQYTVTATNSQGKD  596 (716)
Q Consensus       574 i~~L~~~~~y~~~v~a~n~~G~~  596 (716)
                      |.++.+.+.+.|+|.|.|..|..
T Consensus       157 i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          157 LGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             EEETTSCCEEEEEEEESSCEEEE
T ss_pred             ECCCCcCcCEEEEEEEEcCcCCc
Confidence            99999999999999999988754

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.75  E-value=1.2e-08  Score=81.93  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             eccCcee----eEEEEeCCeEeeeccc-------------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNV-------------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~-------------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      +.|.+.|    .++|+++|+++..+..             .....|.|.++.+.|+|.|+|.|.|..|....++.|.|..
T Consensus        20 l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~~   99 (126)
T 1he7_A           20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD   99 (126)
T ss_dssp             EEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCS
T ss_pred             EEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEEEc
Confidence            7888888    9999999999876511             1236799999999999999999999999999999999998


Q ss_pred             CCCCCC
Q psy7040         701 KPSAPE  706 (716)
Q Consensus       701 ~p~~p~  706 (716)
                      .|.+..
T Consensus       100 ~P~~~~  105 (126)
T 1he7_A          100 NPFEFN  105 (126)
T ss_dssp             CTTSCC
T ss_pred             CCCCCC
Confidence            887643

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.75  E-value=1.3e-07  Score=84.97  Aligned_cols=122  Identities=17%  Similarity=0.225  Sum_probs=90.9

Q ss_pred             CeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCC-eEEE
Q psy7040         382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEW  460 (716)
Q Consensus       382 ~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~-~~~W  460 (716)
                      ..+.|.++...+...|+|.|.|..|.....  .....+   ..+|.+.. .+....+..|..+.|.|.+.+.|.+ .+.|
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~l~V---~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W  141 (195)
T 2c5d_C           68 SQLRITSLQLSDTGQYQCLVFLGHQTFVSQ--PGYVGL---EGLPYFLE-EPEDRTVAANTPFNLSCQAQGPPEPVDLLW  141 (195)
T ss_dssp             EEEEESSCCSTTCEEEEEEEEETTEEEECC--CEEEEE---CCSCEEEE-CCCCEEECTTCCEEEEEEEECSSCCCEEEE
T ss_pred             cEEEEEeccccCCcEEEEEEEeCCCceecc--cEEEEE---ecCCeEEc-CCCcEEEcCCCEEEEEeECCCCCCCCEEEE
Confidence            478899999999999999999976642111  111222   22455432 3445788899999999999999999 9999


Q ss_pred             EeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee-eEEEEEE
Q psy7040         461 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTV  516 (716)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~-~s~~~~v  516 (716)
                      ++++..+......     .....|.|.++.  +.|.|+|.|.|..|... ..+.+.|
T Consensus       142 ~~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          142 LQDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            9999887654432     345689999987  68999999999999774 5665554

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.75  E-value=1.3e-07  Score=73.05  Aligned_cols=79  Identities=19%  Similarity=0.324  Sum_probs=68.4

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +..+.+..|..+.|.|.+ +.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|    |....++
T Consensus        15 ~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~   89 (95)
T 2k1m_A           15 PRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKF   89 (95)
T ss_dssp             CCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEEEEE
T ss_pred             CCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCceEEE
Confidence            457889999999999999 78889999999999998888888888888889999999999999999999    5555555


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+.|
T Consensus        90 ~l~V   93 (95)
T 2k1m_A           90 DLKV   93 (95)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.75  E-value=7.4e-08  Score=75.68  Aligned_cols=79  Identities=14%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             CCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040         424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       424 ~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      .+|.+.......+.+..|..+.|.|.+ +.|.+.+.|++++..+... .++.+...+....|.|.++...|.|.|+|.|.
T Consensus        14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   92 (104)
T 1pd6_A           14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   92 (104)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEEC
Confidence            356665555555889999999999999 6888999999999998776 77777777778899999999999999999994


Q ss_pred             c
Q psy7040         503 N  503 (716)
Q Consensus       503 n  503 (716)
                      |
T Consensus        93 ~   93 (104)
T 1pd6_A           93 G   93 (104)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.74  E-value=1.5e-07  Score=83.52  Aligned_cols=120  Identities=16%  Similarity=0.202  Sum_probs=88.4

Q ss_pred             CeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCC-eEEE
Q psy7040         382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEW  460 (716)
Q Consensus       382 ~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~-~~~W  460 (716)
                      ..+.|.++...+...|+|.+.|..|.....  .....+.   .+|.+.. .+....+..|..+.|.|.+.+.|.+ .+.|
T Consensus        60 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~l~V~---~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W  133 (182)
T 1rhf_A           60 GFLSLKSVERSDAGRYWCQVEDGGETEISQ--PVWLTVE---GVPFFTV-EPKDLAVPPNAPFQLSCEAVGPPEPVTIVW  133 (182)
T ss_dssp             EEEEESSCCGGGCEEEEEEESSCTTCEECC--CEEEEEE---CSCEEEE-CCCCEEECTTCCEEEEEEEECSSSCCEEEE
T ss_pred             EEEEEeecCcccCeEEEEEEEcCCCcEEEE--EEEEEEe---cCCeEEe-cCcceEecCCCEEEEEeEecCCCCCCEEEE
Confidence            568899999999999999999875532111  1112222   2455442 2445788999999999999999999 9999


Q ss_pred             EeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee-eEEEEEE
Q psy7040         461 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTV  516 (716)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~-~s~~~~v  516 (716)
                      ++++..+.....       ....|.|.++  .+.|.|+|.|.|..|... .++.+.|
T Consensus       134 ~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          134 WRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             EETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EcCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            999988754321       4568899988  478999999999999874 3665554

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=98.74  E-value=6.5e-07  Score=86.03  Aligned_cols=217  Identities=12%  Similarity=0.060  Sum_probs=119.0

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE--
Q psy7040         440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL--  517 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~--  517 (716)
                      .|..+.|.|.+... . .+.|.+++.....         +.+.+|.|.++...+.|.|+|.| +  |.....+.+.+.  
T Consensus        20 ~G~~v~l~C~~~~~-~-~i~W~~~~~~~~~---------~~~~~L~i~~~~~~d~G~YtC~~-~--~~~~~~~~l~v~~~   85 (306)
T 3d85_D           20 PGEMVVLTCDTPEE-D-GITWTLDQSSEVL---------GSGKTLTIQVKEFGDAGQYTCHK-G--GEVLSHSLLLLHKK   85 (306)
T ss_dssp             CCEEEEEECSSSCC-S-SCEEEETTCCCCC---------EESSEEEEEECSGGGCEEEEEEE-T--TEEEEEEEEEEEEE
T ss_pred             cCCcEEEECCCCCC-C-cCEEEECCccccC---------CCCCEEEEEecCcCCCceEEEee-C--CcccceEEEEEEec
Confidence            68899999988733 3 7999999875321         12348889999999999999999 2  444333222210  


Q ss_pred             -------------------------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeec--
Q psy7040         518 -------------------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID--  564 (716)
Q Consensus       518 -------------------------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~--  564 (716)
                                                     .+..+|.+..+  +.....|...... ..    ..|...........  
T Consensus        86 ~~~~~~t~i~~~~~~pp~~~~lsC~~~~~~~~~~C~W~pg~~--~~l~~~~~~~r~~-~~----~~~~~C~~~~~~~~~c  158 (306)
T 3d85_D           86 EDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTIS--TDLTFSVKSSRGS-SD----PQGVTCGAATLSAERV  158 (306)
T ss_dssp             ETTEECCCSSCCCC---CCCCCEEEBSSSSSEEEEEEEESCC--SSEEEEEEEEECS-SS----CEEEEECCCEEEEEEE
T ss_pred             cCCcceeeeecccCCCCCCCcceEEcCCcccCcEEEecCCCC--CceeEEEEEEecC-CC----CcceECCCCCCCccce
Confidence                                           67788877543  1222334433211 11    12222111000000  


Q ss_pred             -cccce--eE--EEEcCCCCC----CeEEEEEEEEcCCCCCccceeeec-----cCCCCCCccceeecc-ceeEEEEEE-
Q psy7040         565 -NVDYF--TK--ITIRPLQRS----DTAQYTVTATNSQGKDQVFIEVVV-----TDKPSAPEGPIQWLL-TLTDVTWEI-  628 (716)
Q Consensus       565 -~~~~~--~~--~~i~~L~~~----~~y~~~v~a~n~~G~~~~s~~~~v-----~~~p~~~~~~~~~~~-~~v~l~w~i-  628 (716)
                       .....  ..  +.+..+-+.    ..|.|+|.|.|..|.......+.+     |+||..+. +..+.. ..+.|+|.- 
T Consensus       159 ~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~-~~~~~~~~~l~vsW~~P  237 (306)
T 3d85_D          159 RGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQ-LKPLKNSRQVEVSWEYP  237 (306)
T ss_dssp             C--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEE-EEEC----CEEEEEECC
T ss_pred             eecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehhcEecCCCceEE-EEEecCCCcEEEEEcCC
Confidence             00000  11  123444444    489999999999986555443332     45554444 444333 789999991 


Q ss_pred             -----------eeEEEEeeeeccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceee
Q psy7040         629 -----------SNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF  693 (716)
Q Consensus       629 -----------~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s  693 (716)
                                 ..|.|+|+...     .-.|...  ...     ...++.|.   ++..|.++|+|.|..|.+.+|
T Consensus       238 ~~~~~p~~~~~L~Y~vryr~~~-----~~~~~~~--~~~-----~~ts~~l~---~~~~Y~vqVRa~~~~~~G~WS  298 (306)
T 3d85_D          238 DTWSTPHSYFSLTFCVQVQGKS-----KREKKDR--VFT-----DKTSATVI---CRKNASISVRAQDRYYSSSWS  298 (306)
T ss_dssp             TTSCSCTTTSCEEEEEEEECC-----------CE--EEE-----SSSEEEEC---CCSSCEEEEEEEESSSCCCCC
T ss_pred             CCCcCCCceeeEEEEEEEEECC-----CCccEEE--eec-----cccEEEEe---CCCeEEEEEEeccCCCCCCCC
Confidence                       37778776532     1123211  111     11345553   589999999999988877544

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.74  E-value=1.4e-07  Score=83.85  Aligned_cols=131  Identities=12%  Similarity=0.132  Sum_probs=81.9

Q ss_pred             eeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCcc---ceeeccceeEEEEE
Q psy7040         551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG---PIQWLLTLTDVTWE  627 (716)
Q Consensus       551 ~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~---~~~~~~~~v~l~w~  627 (716)
                      ..|++.+..............+.+.  ...+.+.|+|.|.|.   ......+.|..+|.....   .....+..+.    
T Consensus        32 ~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~----  102 (184)
T 3b5h_A           32 HRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPE---PMGTANIQLHGPPRVKAVKSSEHINEGETAM----  102 (184)
T ss_dssp             EEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEEST---TSCEEEEEECCSCCCEESCSEEEECTTSCEE----
T ss_pred             EEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEECC---cCcEEEEEEecCCceeecCCCcEEcCCCcEE----
Confidence            5666655444322222223566666  588999999999982   223344446555542210   1112234444    


Q ss_pred             EeeEEEEeeeeccCcee-----eEEEEe---CCeEeeec-c--------cceeeEEEEccCC-CCCcEEEEEEEEcCCCC
Q psy7040         628 ISNYLQELHSSLMPISL-----ESQYLM---NDKRVTID-N--------VDYFTKITIRPLQ-RSDTAQYTVTATNSQGK  689 (716)
Q Consensus       628 i~~y~v~~~~~~~~~~~-----~~~W~~---~~~~~~~~-~--------~~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~  689 (716)
                                |.|.+.|     .+.|++   ++..+... .        ......|.|.++. ..|.|.|+|.|.|..|.
T Consensus       103 ----------l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~  172 (184)
T 3b5h_A          103 ----------LVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS  172 (184)
T ss_dssp             ----------EEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEE
T ss_pred             ----------EEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCc
Confidence                      4454444     789999   55443322 1        1122589999999 99999999999999999


Q ss_pred             ceeeEEEEEec
Q psy7040         690 DQVFIEVVVTD  700 (716)
Q Consensus       690 ~~~s~~l~v~~  700 (716)
                      ...+..|.|..
T Consensus       173 ~~~~~~l~V~~  183 (184)
T 3b5h_A          173 DQAIITLRVRS  183 (184)
T ss_dssp             EEEEEEEEEC-
T ss_pred             ceEEEEEEEec
Confidence            99888888864

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.73  E-value=1.2e-07  Score=81.01  Aligned_cols=85  Identities=29%  Similarity=0.411  Sum_probs=74.4

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      +..+.+..|..+.|.|.+.+.|.+.+.|++++..+....++.+... .....|.|.++...|.|.|+|.|.|..|....+
T Consensus        48 ~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  127 (154)
T 1fhg_A           48 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT  127 (154)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEE
Confidence            4457899999999999999999999999999999988888877654 345799999999999999999999999988777


Q ss_pred             EEEEEE
Q psy7040         512 AKVTVL  517 (716)
Q Consensus       512 ~~~~v~  517 (716)
                      +.+.|.
T Consensus       128 ~~l~V~  133 (154)
T 1fhg_A          128 AELLVE  133 (154)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777666

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum}

Probab=98.73  E-value=4.6e-08  Score=75.90  Aligned_cols=84  Identities=19%  Similarity=0.278  Sum_probs=63.9

Q ss_pred             CCCC--ceEEEE-eCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc-cCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          57 PEGP--LEVSNI-HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK-TREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        57 p~~~--l~~~~~-~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      |..|  |.+... ..+++.|+|+++.     .+.+|.|++....++.|..+.. ...++|+..+|.+|+.|.|+|+|+|.
T Consensus         5 P~aP~~l~a~~~~~~~~v~LsW~~~~-----~~~~Y~VyR~~~~~~~~~~i~~~~~~tsy~d~~l~~g~~Y~Y~V~Avn~   79 (103)
T 3mpc_A            5 PAFPTGLSAVLDSSGNTANLTWNAAP-----GANSYNVKRSTKSGGPYTTIATNITSTNYTDTGVATGTKYYYVVSAVSN   79 (103)
T ss_dssp             CCCCEEEEEEECTTSCCEEEEEECCT-----TCSEEEEEEESSTTCCCEEEEEEECSSEEEETTCCTTCCCEEEEEEEET
T ss_pred             CCCCceeEEEEeCCCCEEEEEEECCC-----CCCEEEEEEecCCCCCcEEEeecCCCCEEEECCCCCCCEEEEEEEEEeC
Confidence            4445  444443 3579999999853     2789999888766667776654 45689999999999999999999998


Q ss_pred             CccCCCccccceE
Q psy7040         133 EGESEPLETFSSI  145 (716)
Q Consensus       133 ~g~~~~s~~~~~~  145 (716)
                      .|+|.+|......
T Consensus        80 ~geS~~S~~vs~~   92 (103)
T 3mpc_A           80 GVETLNSAEAILQ   92 (103)
T ss_dssp             TEECCCCCCEECB
T ss_pred             cCCcCCCccEEEE
Confidence            8888887655443

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.73  E-value=1e-07  Score=85.14  Aligned_cols=85  Identities=16%  Similarity=0.184  Sum_probs=67.1

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc-EEEec-ccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV-WIPVG-KTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      .+|..+.+...+.+++.|+|++|.    ..+.+|+|.|...+... ..... ....++++|.+|.|++.|.|+|+|.+..
T Consensus       105 ~~P~~l~v~~~t~~si~l~W~~p~----~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~gL~p~t~Y~~~V~A~~~~  180 (195)
T 2qbw_A          105 SVPTNLEVVAATPTSLLISWDASY----YGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSDY  180 (195)
T ss_dssp             CSSCCCEEEEEETTEEEEECCCCC----SSCSEEEEEEEETTCCSCCEEEEEETTCSEEEECSCCTTCEEEEEEEEESST
T ss_pred             CCCcccEEEeCCCCEEEEEEeCCC----CCccEEEEEEEECCCCCcceEEEeCCCCCEEEeCCCCCCCEEEEEEEEEeCC
Confidence            456678999999999999999985    23899999987765433 22222 2335899999999999999999999999


Q ss_pred             ccCCCccccce
Q psy7040         134 GESEPLETFSS  144 (716)
Q Consensus       134 g~~~~s~~~~~  144 (716)
                      |.+..|.....
T Consensus       181 G~g~~S~~v~~  191 (195)
T 2qbw_A          181 YGSHHYSPISI  191 (195)
T ss_dssp             TSSCBCCCEEE
T ss_pred             ccCCCCCCEEE
Confidence            99988765544

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.73  E-value=5.8e-08  Score=88.63  Aligned_cols=134  Identities=13%  Similarity=0.005  Sum_probs=89.3

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccC--CCeE
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP--IPTK  458 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p--~~~~  458 (716)
                      ...+.|.++...+.+.|+|.|.|..+. ..+... ...... ..+|.+.......+.+..|+.+.|.|.+.+.|  .+.+
T Consensus        63 ~~~l~I~~v~~~D~G~Y~C~a~n~~~~-~~s~~~-~l~v~~-~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i  139 (213)
T 2x1w_L           63 KKGFTIPSYMISYAGMVFCEAKINDES-YQSIMY-IVVVVG-YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF  139 (213)
T ss_dssp             TTEEEEEGGGTTTCSEEEEEEC----C-EECCCE-EEEECB-CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEE
T ss_pred             CccEEEccCChhcCceEEEEEEECCee-EEEEEE-EEEEeC-CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEE
Confidence            456899999999999999999884332 222211 111211 22444443444556899999999999999855  4579


Q ss_pred             EEEeCCeEeccCCc-EEEEe-------CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         459 EWLCNDITIISKDR-FKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       459 ~W~~~~~~~~~~~~-~~~~~-------~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .|++++..+..... .....       ......|.|.++...|.|.|+|.|.|..|..+.++.+.|.
T Consensus       140 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  206 (213)
T 2x1w_L          140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH  206 (213)
T ss_dssp             EEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEe
Confidence            99998876422111 00000       1123479999999999999999999999998877777665

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.72  E-value=3.8e-07  Score=85.53  Aligned_cols=168  Identities=13%  Similarity=0.124  Sum_probs=101.1

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCe-----EEEEeCCeEeccC--------CcEE-------EE---eCCCeEEEEECCC
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPT-----KEWLCNDITIISK--------DRFK-------IV---NDDKSTKLKVFDS  489 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~-----~~W~~~~~~~~~~--------~~~~-------~~---~~~~~~~l~i~~l  489 (716)
                      +..+.+..|+.+.|.|.+.+.|.+.     +.|++++......        ....       +.   ......+|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            3456789999999999999888776     9999864322100        0000       00   0112345999999


Q ss_pred             CCCCceeEEEEEEcCCCceeeEEEEEEE---EEEEEEeCCCCCCCCceeeEEEEEEecCCCce-eeeEEEccceee----
Q psy7040         490 KRGDSGIYTLAVKNSWGTDKGTAKVTVL---GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV-LIKWIRTNDKRV----  561 (716)
Q Consensus       490 ~~~~~~~y~~~a~n~~g~~~~s~~~~v~---~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~-~~~w~~~~~~~~----  561 (716)
                      ...|.|.|+|.+.|..+.......+.+.   .+.+.=......++.....|.+...   .+.+ .+.|++.+....    
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~---~P~pi~v~W~k~g~~l~~~~~  166 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGF---YPEAINITWEKQTQKFPHPIE  166 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEE---BSSCCEEEEEEECSSSCSCEE
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccE---ECCCeEEEEEECCccCCCccc
Confidence            9999999999999998877777777776   3333211111222333445555431   1233 499999874211    


Q ss_pred             ---------eecccc----ceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee
Q psy7040         562 ---------TIDNVD----YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV  603 (716)
Q Consensus       562 ---------~~~~~~----~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~  603 (716)
                               .....+    ....+.+.....++.+.|+|.|.|..+.......+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~  221 (248)
T 3pv7_A          167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFT  221 (248)
T ss_dssp             ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEEC
T ss_pred             cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEE
Confidence                     000011    123466666777788899999999988766555554

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.72  E-value=1.8e-07  Score=74.39  Aligned_cols=86  Identities=20%  Similarity=0.294  Sum_probs=66.4

Q ss_pred             ccccEEEecCCeEEEEEEEeccCC---CeEEEEeCCeEecc---CCcEEEEeC------CCeEEEEECCCCCCCceeEEE
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEPI---PTKEWLCNDITIIS---KDRFKIVND------DKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p~---~~~~W~~~~~~~~~---~~~~~~~~~------~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      .+..+.+..|..+.|.|.+.+.|.   +.+.|++++.....   ..++.+...      .....|.|.++.+.|.|.|+|
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (108)
T 3cx2_A           10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRC   89 (108)
T ss_dssp             CCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEE
T ss_pred             CCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEE
Confidence            345688999999999999999998   99999998732211   233443211      124689999999999999999


Q ss_pred             EEEcCCCceeeEEEEEEE
Q psy7040         500 AVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       500 ~a~n~~g~~~~s~~~~v~  517 (716)
                      .|.|..|....++.+.|.
T Consensus        90 ~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           90 EVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             EEECSSCEEEEEEEEEEE
T ss_pred             EEecCCCceEEEEEEEEe
Confidence            999999999888887764

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.72  E-value=7.9e-08  Score=75.51  Aligned_cols=78  Identities=19%  Similarity=0.345  Sum_probs=63.1

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEE--eCC---CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV--NDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~---~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      .+..+.+.|.+.|.|.|.+.|++++..+.........  ..+   ....|.|.++...|.|.|+|.|.|..|....++.+
T Consensus        15 ~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   94 (103)
T 1wwb_X           15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             ECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence            4667899999999999999999999998876654222  111   23459999999999999999999999998887776


Q ss_pred             EEE
Q psy7040         515 TVL  517 (716)
Q Consensus       515 ~v~  517 (716)
                      .+.
T Consensus        95 ~V~   97 (103)
T 1wwb_X           95 HFM   97 (103)
T ss_dssp             CCS
T ss_pred             EEC
Confidence            653

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.72  E-value=2.1e-08  Score=78.79  Aligned_cols=67  Identities=18%  Similarity=0.248  Sum_probs=56.0

Q ss_pred             eccCcee----eEEEEeCCeEeeeccc-----------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNV-----------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~-----------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                      +.|.+.|    .+.|+++|+.+..+..           .....|.|.++...|+|.|+|.|.|..|....++.|.|..+|
T Consensus        21 ~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~~~P  100 (103)
T 1wwb_X           21 IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCC
T ss_pred             EEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEECCCC
Confidence            6777777    9999999998876521           122459999999999999999999999999999999998877


Q ss_pred             CC
Q psy7040         703 SA  704 (716)
Q Consensus       703 ~~  704 (716)
                      .+
T Consensus       101 ~~  102 (103)
T 1wwb_X          101 GI  102 (103)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1

Probab=98.72  E-value=3.9e-07  Score=84.23  Aligned_cols=92  Identities=15%  Similarity=0.165  Sum_probs=69.7

Q ss_pred             CCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEE
Q psy7040         222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV  301 (716)
Q Consensus       222 ~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~  301 (716)
                      +|.||.+ +.+.......+.|+|+.|.. .  ....|.|+++......|.....  .....+.|.+|.|++.|.|+|+|.
T Consensus       136 kP~PP~n-l~v~~~~~~~l~l~W~~P~~-~--~~L~Yevry~~~~~~~W~~~~~--~~~~~~~l~~L~p~~~Y~vqVR~k  209 (247)
T 2erj_C          136 IPWAPEN-LTLHKLSESQLELNWNNRFL-N--HCLEHLVQYRTDWDHSWTEQSV--DYRHKFSLPSVDGQKRYTFRVRSR  209 (247)
T ss_dssp             ECCCCEE-EEEEESSSSCEEEEEECSSC-C--TTEEEEEEEECSSCSSCEEEEE--CSSCEEEESCCCTTSCEEEEEEEE
T ss_pred             EeCCCCe-EEEEECCCCcEEEEECCCCC-C--CcEEEEEEEeeCCCCCCEEEec--CCceEEEecCCCCCCEEEEEEEEE
Confidence            6888887 88887767799999998752 1  2458999999877778886543  346789999999999999999999


Q ss_pred             cCCC---CCCCCcccceEEec
Q psy7040         302 NKQG---KSEPLTTTASIEAK  319 (716)
Q Consensus       302 n~~g---~~~~~~~~~~~~~~  319 (716)
                      ...|   .+.+|..+..+...
T Consensus       210 ~~~~~~~~g~WSeWS~~~~~~  230 (247)
T 2erj_C          210 FNPLCGSAQHWSEWSHPIHWG  230 (247)
T ss_dssp             ECSSSCCCCCCCCCCCCEEEC
T ss_pred             eCCCCCCCCccCCCCcCEEEE
Confidence            8643   44556665545544

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.72  E-value=1.9e-08  Score=78.92  Aligned_cols=83  Identities=25%  Similarity=0.334  Sum_probs=67.1

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcE-EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF-KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      ..+.+..|..+.|.|.+.+.|.+.+.|++++..+...... ..........|.|.++...|.|.|+|.|.|..|....++
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   95 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   95 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEE
Confidence            4678899999999999999999999999999887654321 111222345899999999999999999999999988777


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+.+
T Consensus        96 ~l~V   99 (100)
T 3caf_A           96 HLDV   99 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7665

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.72  E-value=8.8e-08  Score=87.37  Aligned_cols=116  Identities=15%  Similarity=0.170  Sum_probs=74.8

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCC--CccceeeeccCCC-CCCccceee-------ccceeEEEEEEeeEEEEeeeec
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGK--DQVFIEVVVTDKP-SAPEGPIQW-------LLTLTDVTWEISNYLQELHSSL  639 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~--~~~s~~~~v~~~p-~~~~~~~~~-------~~~~v~l~w~i~~y~v~~~~~~  639 (716)
                      ..+.|.+++..+.+.|.|.|.|..|.  ......+.|...+ ..|. +...       .+..+.|.+.+.++.-      
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~-v~~~~~~~~~~~g~~v~l~C~~~g~~p------  140 (211)
T 3tv3_L           68 ASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPS-VTLFPPSSEELQANKATLVCLISDFYP------  140 (211)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCE-EEEECCCHHHHHTTCEEEEEEEEEEBS------
T ss_pred             EEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCe-eEecCCchhhhcCCCeEEEEEeeeecC------
Confidence            78999999999999999999998772  2223334444222 3333 2221       2455665554333210      


Q ss_pred             cCceeeEEEEeCCeEeeec------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeE
Q psy7040         640 MPISLESQYLMNDKRVTID------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI  694 (716)
Q Consensus       640 ~~~~~~~~W~~~~~~~~~~------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~  694 (716)
                        ..-.+.|+++|..+...            .......|.|..+..+|.|.|+|.|.|..|....+.
T Consensus       141 --~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          141 --GAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             --SCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             --CCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence              00178999999988542            001125688999888899999999999887554443

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=5.2e-08  Score=76.14  Aligned_cols=88  Identities=30%  Similarity=0.433  Sum_probs=70.6

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +|.+.. .+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+......   .......|.|.++.+.|.|.|+|.|.|.
T Consensus        11 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   86 (99)
T 2yr3_A           11 APSFSS-VLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYTCLAENA   86 (99)
T ss_dssp             EEEEEE-CCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCE---EETTEEEEEECSCCTTCCBCEEEEEECS
T ss_pred             CCceee-cCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceE---eeCCeEEEEECCCChhhCEEEEEEEEEC
Confidence            444432 245678999999999999999999999999999887644322   2344678999999999999999999999


Q ss_pred             CCceeeEEEEEE
Q psy7040         505 WGTDKGTAKVTV  516 (716)
Q Consensus       505 ~g~~~~s~~~~v  516 (716)
                      .|....++.+.|
T Consensus        87 ~g~~~~~~~l~V   98 (99)
T 2yr3_A           87 LGQVSCSAWVTV   98 (99)
T ss_dssp             SCEEEEECCEEE
T ss_pred             CCeEEEEEEEEE
Confidence            998877766655

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A

Probab=98.71  E-value=3.7e-08  Score=74.62  Aligned_cols=78  Identities=12%  Similarity=0.264  Sum_probs=63.2

Q ss_pred             CCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCC
Q psy7040         328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP  407 (716)
Q Consensus       328 p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~  407 (716)
                      ...+++..++.++++|+|.+|.    +.+.+|+|.|...+..........++...++.|.+|.|++.|.++|.|.+..+.
T Consensus         9 ~~~l~vt~vt~~S~~lsW~~p~----~~v~~Y~I~y~~~~g~~~~~~~~v~g~~~s~~l~~L~PgT~Y~V~v~a~~~~~~   84 (95)
T 2h41_A            9 ATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGE   84 (95)
T ss_dssp             TCTTSCCCCGGGCEEEECCCSC----TTEEEEEEEEEETTTCCCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSC
T ss_pred             EEEEEEEEeCCCeEEEEECCCC----CCccEEEEEEEeCCCCCcceEEECCCCccEEEECCCCCCCEEEEEEEEEcCCCc
Confidence            3457788889999999999864    369999999998764433334556788999999999999999999999997765


Q ss_pred             CC
Q psy7040         408 GE  409 (716)
Q Consensus       408 ~~  409 (716)
                      +.
T Consensus        85 S~   86 (95)
T 2h41_A           85 QS   86 (95)
T ss_dssp             EE
T ss_pred             cc
Confidence            53

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=6.8e-08  Score=75.65  Aligned_cols=89  Identities=21%  Similarity=0.343  Sum_probs=70.4

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +|.+. ..+..+.+..|..+.|.|.+.+.|.+.+.|++++..+.. ..++.+..   ...|.|.++...|.|.|+|.|.|
T Consensus         8 ~P~i~-~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n   83 (100)
T 2edj_A            8 PPIIL-QGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE---QGTLQIKNLRISDTGTYTCVATS   83 (100)
T ss_dssp             SCEEE-ECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECT---TCCEEEESCCTTTCCEEEEEEEC
T ss_pred             CCEEE-eCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcC---CCEEEEccCCcccCEEEEEEEEc
Confidence            44443 234567899999999999999999999999999988763 33333322   23699999999999999999999


Q ss_pred             CCCceeeEEEEEEE
Q psy7040         504 SWGTDKGTAKVTVL  517 (716)
Q Consensus       504 ~~g~~~~s~~~~v~  517 (716)
                      ..|....++.+.|.
T Consensus        84 ~~g~~~~~~~l~V~   97 (100)
T 2edj_A           84 SSGETSWSAVLDVT   97 (100)
T ss_dssp             SSCCCBCCEEEEEE
T ss_pred             CCCCEEEEEEEEEe
Confidence            99988777766654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.70  E-value=1.1e-07  Score=87.30  Aligned_cols=131  Identities=10%  Similarity=0.073  Sum_probs=89.3

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEE
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW  460 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W  460 (716)
                      ..++.|.++...+.+.|.|.+.+..+........  .....   ++...........+..+..+.+.|.+.+.|.+.+.|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W  152 (218)
T 4frw_A           78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLR--LRVLV---PPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTW  152 (218)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEE--EEEEB---CCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEE
T ss_pred             eEEEEEeeccHHHCCceeEEEEeccCceeeeEEE--EEEee---eccceeeeeeeeeeeeccccceeeeccCCcCceEEE
Confidence            3568999999999999999998876543221111  11111   222122223445667788999999999999999999


Q ss_pred             EeCCeEeccCCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         461 LCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      ++++..+........... .....|.|.++...|.|.|+|.|.|..|..+....+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          153 DTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             EESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             EECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            999877643322211100 01347999999999999999999999998776655443

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.70  E-value=4.2e-08  Score=92.31  Aligned_cols=127  Identities=9%  Similarity=0.036  Sum_probs=88.6

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCC--CCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeE
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP--TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK  458 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~--~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~  458 (716)
                      ...+.|.++...+...|+|.+.|..+.......  .....+...+.+|.+.......+.+..|..+.|.|.+.+.|.+.+
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v  168 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV  168 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence            457999999999999999999988764322110  111222222334444444455677888999999999999999999


Q ss_pred             EEEeCCeEeccCCcE--EEE-------------------eCCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         459 EWLCNDITIISKDRF--KIV-------------------NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       459 ~W~~~~~~~~~~~~~--~~~-------------------~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      .|++++..+......  ...                   .......|.|.++...|.|.|+|.|.|..|.
T Consensus       169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             EEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred             EEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc
Confidence            999998766432211  100                   0002258999999999999999999996553

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=6.4e-08  Score=76.13  Aligned_cols=73  Identities=21%  Similarity=0.347  Sum_probs=64.8

Q ss_pred             cccccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         431 DQLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       431 ~~~~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      ..+.++.+.+|+.+.|.|.+.+.|.+ .+.|++++..+....++.+..++....|.|.++..+|.|.|+|.|.|
T Consensus        13 ~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   86 (104)
T 2eny_A           13 KRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG   86 (104)
T ss_dssp             BCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred             ecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC
Confidence            44567899999999999999988754 79999999999888888888888888999999999999999999854

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.69  E-value=1.8e-08  Score=91.94  Aligned_cols=123  Identities=14%  Similarity=0.170  Sum_probs=87.9

Q ss_pred             CeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEE-eccCCCeEEE
Q psy7040         382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTKEW  460 (716)
Q Consensus       382 ~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v-~~~p~~~~~W  460 (716)
                      ..+.|.++...+.+.|+|.+.|..|....+... ......   +|.+... .....+..|..+.|.|.+ .+.|.+.+.|
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~-~l~V~~---~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~v~W  142 (209)
T 1nbq_A           68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKV-KLIVLV---PPSKPTV-NIPSSATIGNRAVLTCSEQDGSPPSEYTW  142 (209)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTSSCEECCEE-ECCEEB---CCCCCCC-CCBSEEETTSCEEECCCCCSCBSCCEEEE
T ss_pred             cEEEEeeCCHHHCcEEEEEEecCCCCccceEEE-EEEEec---CCcCCCc-ccccceecCCEEEEEEeCCCCCCCceeEE
Confidence            678999999999999999999987632222111 111112   2332211 223468899999999997 9999999999


Q ss_pred             EeCCeEeccCCcE-------EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040         461 LCNDITIISKDRF-------KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       461 ~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~  509 (716)
                      ++++..+......       ..........|.|.++...|.|.|+|.|.|..|...
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  198 (209)
T 1nbq_A          143 FKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM  198 (209)
T ss_dssp             EETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCE
T ss_pred             EECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccc
Confidence            9999877643321       111222456899999999999999999999999873

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=9.2e-08  Score=75.85  Aligned_cols=87  Identities=23%  Similarity=0.316  Sum_probs=66.9

Q ss_pred             cccccEEEecCCeEEEEEEEecc---CCCeEEEEeCCe-Eecc--CCcEEEEe--CC----CeEEEEECCCCCCCceeEE
Q psy7040         431 DQLSDIKVRAGSNFEFDINVIGE---PIPTKEWLCNDI-TIIS--KDRFKIVN--DD----KSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       431 ~~~~~~~~~~g~~~~~~~~v~~~---p~~~~~W~~~~~-~~~~--~~~~~~~~--~~----~~~~l~i~~l~~~~~~~y~  498 (716)
                      ..+.++.+.+|..+.|.|.+.+.   |.|.+.|+|+.. .+..  ..++.+..  ..    ....|.|.++.+.|.|.|+
T Consensus        17 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   96 (118)
T 2edn_A           17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYR   96 (118)
T ss_dssp             BCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEE
T ss_pred             ECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEE
Confidence            33567889999999999999886   789999999741 1111  23333322  11    2578999999999999999


Q ss_pred             EEEEcCCCceeeEEEEEEE
Q psy7040         499 LAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       499 ~~a~n~~g~~~~s~~~~v~  517 (716)
                      |.|.|..|..+..+.+.|.
T Consensus        97 Cevsn~~g~~s~~~~L~V~  115 (118)
T 2edn_A           97 LEVKAKDTCDSCGFNIDVE  115 (118)
T ss_dssp             EEEECSSCEEEEEECCEEE
T ss_pred             EEEEEcCCcEEEEEEEEEE
Confidence            9999999998888877764

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.69  E-value=2e-07  Score=83.90  Aligned_cols=124  Identities=10%  Similarity=0.018  Sum_probs=84.2

Q ss_pred             CCCCeEEecCCCCCCeEEEEEEEEeCC-CCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCe
Q psy7040         379 GDTPKGKVLDLIEGNQYEFRVLAVNKG-GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT  457 (716)
Q Consensus       379 ~~~~~~~i~~l~~~~~Y~~~v~a~n~~-g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~  457 (716)
                      .....+.|.++...+.+.|+|.|.|.. |.+..+.... ..+...+.+|.+...  ....+..|+.+.|.|.+.+. .+.
T Consensus        55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~-l~V~~~~~~p~i~~~--~~~~v~~G~~v~L~C~~~~~-~~~  130 (198)
T 1ugn_A           55 VKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLE-LVVTGAYIKPTLSAQ--PSPVVNSGGNVTLQCDSQVA-FDG  130 (198)
T ss_dssp             HTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEE-EEEECSSCCCEEEEE--SCSEEETTCCEEEEEECSSC-CSE
T ss_pred             CcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEE-EEEcccccCCccccC--CccccCCCCcEEEEEecCCC-CcE
Confidence            356789999999999999999999987 6444443322 222222334554322  23578899999999999888 789


Q ss_pred             EEEEeCCeEeccCCcE-EE-EeCCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         458 KEWLCNDITIISKDRF-KI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       458 ~~W~~~~~~~~~~~~~-~~-~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      +.|++++..+...... .. ........|.|.++...|.|.|+|.|.|..+
T Consensus       131 v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          131 FILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             EEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            9999999876432211 11 1122457899999999999999999999876

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.69  E-value=4.1e-08  Score=77.82  Aligned_cols=72  Identities=24%  Similarity=0.401  Sum_probs=65.5

Q ss_pred             ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      .+.++.+..|+.+.|.|.+.+.|.+ +.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|.
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   85 (106)
T 2dlt_A           14 DIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY   85 (106)
T ss_dssp             CCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred             CCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC
Confidence            3557889999999999999998887 99999999988888888888888889999999999999999999998

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.68  E-value=1.2e-07  Score=83.34  Aligned_cols=108  Identities=19%  Similarity=0.195  Sum_probs=75.4

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCccc--eeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCcee---
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL---  644 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s--~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~---  644 (716)
                      .++.|.+++..+.+.|+|.|.|..|.....  ..+.|..++..|. +.. ....+.              |.|.+.+   
T Consensus        66 gsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~-i~~-~~~~v~--------------L~C~~~~~p~  129 (182)
T 1hnf_A           66 GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK-ISW-TCINTT--------------LTCEVMNGTD  129 (182)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCE-EEE-ETTTTE--------------EEEECSSCSS
T ss_pred             CCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCE-EEE-ccCcEE--------------EEeEccCCCC
Confidence            689999999999999999999988865432  2344655555555 332 222343              5666654   


Q ss_pred             -eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         645 -ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       645 -~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                       .+.|+++|..+ ..   ....+.+ .+...|.|.|+|.|.|..|....+..+..
T Consensus       130 ~~~~W~~~g~~l-~~---~~~~i~~-~~~~~d~G~Y~C~a~N~~~~~~s~~~~~c  179 (182)
T 1hnf_A          130 PELNLYQDGKHL-KL---SQRVITH-KWTTSLSAKFKCTAGNKVSKESSVEPVSC  179 (182)
T ss_dssp             CEEEEEESSCEE-EE---ESSCEEE-ECCSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CEEEEEECCEEC-CC---CCcEEEE-ecccCCCcEEEEEEEeCCCCcEEcceecC
Confidence             89999999988 22   1122333 23578999999999999998887776643

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.68  E-value=4.6e-08  Score=89.03  Aligned_cols=121  Identities=12%  Similarity=0.162  Sum_probs=90.2

Q ss_pred             CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEE
Q psy7040         381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW  460 (716)
Q Consensus       381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W  460 (716)
                      ..++.|.++...+.+.|+|.+.+..+... + ......+...+..|.+......   +..|..+.|.|.+.+.| +.+.|
T Consensus        70 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~-~-~~~~l~V~~~~~~p~i~~~~~~---~~~g~~v~l~C~~~~~p-p~i~W  143 (208)
T 3r4d_A           70 NGSLLFQMITMKDMGVYTLDMTDENYRRT-Q-ATVRFHVHQPVTQPFLQVTNTT---VKELDSVTLTCLSNDIG-ANIQW  143 (208)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEECSSCEEE-E-EEEEEEEECCCCCCEEEESCSS---CCTTCCEEEEEECSCTT-CEEEE
T ss_pred             CCeEEEccccccCCeEEEEEEEcccCcee-E-EEEEEEeccCCCCCEEecCCce---EeeCCCEEEEEECCCCC-CceEE
Confidence            34799999999999999999999754211 1 1111222233334554432222   78899999999999876 79999


Q ss_pred             EeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040         461 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~  509 (716)
                      ++++..+....++.+...+  ..|.|.++...|.|.|+|.|.|..|...
T Consensus       144 ~~~g~~l~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  190 (208)
T 3r4d_A          144 LFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRR  190 (208)
T ss_dssp             EETTEECCCCSSEEEETTT--TEEEESSCCGGGCEEEEEEEECTTCCEE
T ss_pred             EECCEeCCCCCCeEEcCCC--CEEEEeccCHHhCeEEEEEEecCCCccc
Confidence            9999998877777665443  5899999999999999999999999764

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.68  E-value=7.1e-07  Score=83.62  Aligned_cols=42  Identities=21%  Similarity=0.116  Sum_probs=31.0

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEEecCCCCC
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDKPSAP  705 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v~~~p~~p  705 (716)
                      ...|.|.++..+|+|.|.|.|.|..+.. .....|.|. .+.+|
T Consensus       204 ~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~-~~~~p  246 (247)
T 2ghw_B          204 DFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK-SGLVP  246 (247)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-CSCCC
T ss_pred             eEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC-CCCCC
Confidence            4579999999999999999999964433 234567776 34443

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.68  E-value=1.2e-07  Score=86.98  Aligned_cols=122  Identities=19%  Similarity=0.253  Sum_probs=87.5

Q ss_pred             EecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEE-eccCCCeEEEEeC
Q psy7040         385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTKEWLCN  463 (716)
Q Consensus       385 ~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v-~~~p~~~~~W~~~  463 (716)
                      .|.++...+.+.|+|.+.|..|..........+..    .+|.+. ..+....+..|..+.|.|.+ .+.|.+.+.|+++
T Consensus        72 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~----~~~~~~-~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~  146 (217)
T 2vr9_A           72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV----LRDDFR-VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD  146 (217)
T ss_dssp             CCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECE----ECCSCS-BCCCCEEECTTSCEEECCBCCCEESCCEEEEEET
T ss_pred             EeccCCcccCceEEEEEecCCCccccccceEEEEE----eCCCcE-ECCCccEEcCCCeEEEEEECCCCCCCCeEEEEEC
Confidence            57778889999999999998775422111111111    122222 22346778999999999999 9999999999999


Q ss_pred             CeEecc--------CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         464 DITIIS--------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       464 ~~~~~~--------~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      +..+..        ..++.+..   ...|.|.++...|.|.|+|.|.|..|....+..+
T Consensus       147 g~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~  202 (217)
T 2vr9_A          147 GVPLDDLKAMSFGASSRVRIVD---GGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAK  202 (217)
T ss_dssp             TEEECCCCCC---CCCSEEEET---TTEEEESSCCSTTCEEEEEEEEETTEEEECCCEE
T ss_pred             CcCCCcccccccccCCcEEecC---CCcEEEeeCCHHHCeEEEEEEEcccceeccccEE
Confidence            988863        23333322   2379999999999999999999999987665433

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.68  E-value=4.4e-07  Score=83.03  Aligned_cols=115  Identities=15%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCCc--cceeeeccCCCCCCccceee-------ccceeEEEEEEeeEEEEeeeecc
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEGPIQW-------LLTLTDVTWEISNYLQELHSSLM  640 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~--~s~~~~v~~~p~~~~~~~~~-------~~~~v~l~w~i~~y~v~~~~~~~  640 (716)
                      ..+.|.+++..+.+.|.|.|.|..|...  ....+.|...+..|. +...       .+..+.|.+.+.++.-       
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~-v~~~~~~~~~~~g~~v~L~C~~~g~~P-------  143 (216)
T 2xzc_L           72 ATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPS-VFIFPPSDEQLKSGTASVVCLLNNFYP-------  143 (216)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCE-EEEECCCHHHHHTTEEEEEEEEEEEBS-------
T ss_pred             EEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCc-eEEeCCChhhccCCcEEEEEEEEeEcC-------
Confidence            6899999999999999999999876111  122333543333443 3221       2345555544333210       


Q ss_pred             CceeeEEEEeCCeEeeec-c--------cc----eeeEEEEccCCCCCcEEEEEEEEcCCCCceee
Q psy7040         641 PISLESQYLMNDKRVTID-N--------VD----YFTKITIRPLQRSDTAQYTVTATNSQGKDQVF  693 (716)
Q Consensus       641 ~~~~~~~W~~~~~~~~~~-~--------~~----~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s  693 (716)
                       ..-.+.|+++|..+... .        .+    ....|.|..+..+|.|.|+|.|.|........
T Consensus       144 -~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (216)
T 2xzc_L          144 -REAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT  208 (216)
T ss_dssp             -SCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred             -CceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceE
Confidence             00068999999887543 0        01    11378999999999999999999987765433

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=7.6e-08  Score=75.83  Aligned_cols=71  Identities=21%  Similarity=0.328  Sum_probs=64.6

Q ss_pred             ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      .+..+.+..|+.+.|.|.+.+ |.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A           14 PLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             cCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            345688999999999999997 78899999999999888888888888888999999999999999999999

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.67  E-value=3.6e-07  Score=86.45  Aligned_cols=247  Identities=8%  Similarity=0.029  Sum_probs=82.9

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEE-EeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  513 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~  513 (716)
                      .+.+..|+.+.+.|...-..+..+.|.-.-...      .. ........+.+.++..+  +.|+|++....-.....+.
T Consensus         8 ~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~------~~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v~   79 (291)
T 1mq8_A            8 KVILPRGGSVLVTCSTSCDQPKLLGIETPLPKK------ELLLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTAKTF   79 (291)
T ss_dssp             EEEECTTCEEEEEEEECCSSCSEEEEECSSCCC------CCCCSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEEECE
T ss_pred             ccEEcCCCeEEEEEeCCCCCCccceEEecCCCc------ccccCCCceEEEEEEecccC--CeEEEEEEcCCccEEEEEE
Confidence            467999999999999974333348886321100      00 00112235778887754  4699998643323333444


Q ss_pred             EEEE----EEEEEEeC-CCCCCCCceeeEEEEEEecCCC---ceeeeEEEccceeeeecccc--ceeEEEEcCCCCCCeE
Q psy7040         514 VTVL----GCSLKWNP-PEDDGGAPIEYYMVEKMETDTG---KVLIKWIRTNDKRVTIDNVD--YFTKITIRPLQRSDTA  583 (716)
Q Consensus       514 ~~v~----~v~l~W~~-p~~~~~~~i~~y~v~~~~~~~~---~~~~~w~~~~~~~~~~~~~~--~~~~~~i~~L~~~~~y  583 (716)
                      +.+.    .+.+.-.+ ....+    ..+.|.....+..   ...+.|++.+..........  ....+.+..-..++..
T Consensus        80 l~V~~~P~~v~I~~~~~~~~~G----~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~g~  155 (291)
T 1mq8_A           80 LTVYWTPERVELAPLPSWQPVG----KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGA  155 (291)
T ss_dssp             EEECBCCSCCCBCCCCSBCCSS----CCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSCSSC
T ss_pred             EEEecCCCCCEEecCCccccCC----CCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeeccCCc
Confidence            4444    22222111 01111    2234443333221   12379999887655333111  1245666666667778


Q ss_pred             EEEEEEEcCCCC-Cc-------cceeeeccCCCCC-CccceeeccceeEEEEEEeeEEEEeeeeccCcee-------eEE
Q psy7040         584 QYTVTATNSQGK-DQ-------VFIEVVVTDKPSA-PEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL-------ESQ  647 (716)
Q Consensus       584 ~~~v~a~n~~G~-~~-------~s~~~~v~~~p~~-~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~-------~~~  647 (716)
                      .|+|+|.|..+. |.       ....+.|..+|.. +. +..  ...+.     .|-.   ..+.|.+.|       .+.
T Consensus       156 ~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~-~~~--p~~l~-----eG~~---v~l~C~~~g~~P~~~~~v~  224 (291)
T 1mq8_A          156 NFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQ-LVS--PRVLE-----VDTQ---GTVVCSLDGLFPVSEAQVH  224 (291)
T ss_dssp             EEEEEEEEECGGGTSCEEEECCCCEECBC---------------------------------------------------
T ss_pred             eEEEEEEecCCccCCccccccccceEEEEEecCCCCce-ecC--CcCcc-----CCCe---EEEEEEcCCCCCCcccEEE
Confidence            999999998763 32       1122335555433 33 221  11111     1111   237777776       489


Q ss_pred             EEeCCeEeeecccceeeEEEEccC---CC--CCcEEEEEEEEcCCCCceeeEEEEEecCCCC
Q psy7040         648 YLMNDKRVTIDNVDYFTKITIRPL---QR--SDTAQYTVTATNSQGKDQVFIEVVVTDKPSA  704 (716)
Q Consensus       648 W~~~~~~~~~~~~~~~~~~~i~~l---~~--~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~  704 (716)
                      |.++|+.+..........+.+..+   ..  +..|.|+|.|.|..........|.|...|.|
T Consensus       225 w~~~g~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~~  286 (291)
T 1mq8_A          225 LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP  286 (291)
T ss_dssp             --------------------------------------------------------------
T ss_pred             EEECCEecCceeeecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCCc
Confidence            999999887552222234444444   23  4578889999986655677888998876554

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.2e-07  Score=74.84  Aligned_cols=70  Identities=11%  Similarity=0.225  Sum_probs=64.5

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      +.+..|+.+.|.|.+.+.|.+ +.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..+
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~   89 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA   89 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE
Confidence            788999999999999999998 9999999999888888888888888999999999999999999999755

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=2.7e-07  Score=72.71  Aligned_cols=82  Identities=22%  Similarity=0.340  Sum_probs=67.2

Q ss_pred             cccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCC----------cEEEEeCCCeEEEEECCCCCCCceeEEEE
Q psy7040         431 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----------RFKIVNDDKSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       431 ~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~----------~~~~~~~~~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      ..+.++.+.+|+.+.|.|.+.+  .+.+.|++++..+..+.          ++.+..++..+.|+|.++.++|.|.|+|.
T Consensus        13 ~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~   90 (112)
T 2e6q_A           13 AGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGF   90 (112)
T ss_dssp             ECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEE
T ss_pred             cCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEE
Confidence            4567899999999999999997  77899999999998887          88888888889999999999999999775


Q ss_pred             EEcCCCceeeEEEEEEE
Q psy7040         501 VKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       501 a~n~~g~~~~s~~~~v~  517 (716)
                      ..+.   ...++.+.|.
T Consensus        91 ~~~~---~~ssA~L~V~  104 (112)
T 2e6q_A           91 SCPG---VQDSAALTIQ  104 (112)
T ss_dssp             EETT---EEEEEEEEEE
T ss_pred             EECC---eeEEEEEEEe
Confidence            5442   2334444443

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.66  E-value=2.3e-07  Score=85.54  Aligned_cols=129  Identities=12%  Similarity=0.092  Sum_probs=75.9

Q ss_pred             eEEEEcCCCCCCeEEEEEEEEcCCCCC-ccceeeeccC-CCCCCccceee-------ccceeEEEEEEeeEEEEeeeecc
Q psy7040         570 TKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTD-KPSAPEGPIQW-------LLTLTDVTWEISNYLQELHSSLM  640 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~-~~s~~~~v~~-~p~~~~~~~~~-------~~~~v~l~w~i~~y~v~~~~~~~  640 (716)
                      ..+.|.+++..+.+.|.|.+.|..+.. .....+.|.. ++..|. +...       .+..+.|.+.+.|+.        
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~-v~~~~~~~~~~~g~~v~L~C~~~g~~--------  149 (227)
T 1mju_H           79 AYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPS-VYPLAPVCGDTSGSSVTLGCLVKGYF--------  149 (227)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCE-EEEECCCC------CEEEEEEEEEEB--------
T ss_pred             EEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCE-EEEecCCccccCCCcEEEEEEeecEe--------
Confidence            789999999999999999999863210 0112334443 233343 3221       133444444332220        


Q ss_pred             CceeeEEEEeCCeEeeec-----c--c--ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCC
Q psy7040         641 PISLESQYLMNDKRVTID-----N--V--DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP  708 (716)
Q Consensus       641 ~~~~~~~W~~~~~~~~~~-----~--~--~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~p  708 (716)
                      +..-.+.|++++..+...     .  .  .....|.|.....++ |.|+|.|.|..+.......+.+..+|++|=+|
T Consensus       150 P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~~~~~  225 (227)
T 1mju_H          150 PEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPP  225 (227)
T ss_dssp             SSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-------
T ss_pred             CCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCCCCCC
Confidence            000078999998753211     0  0  122578999998888 99999999988887788888888888877555

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.66  E-value=2.8e-07  Score=84.13  Aligned_cols=116  Identities=9%  Similarity=0.021  Sum_probs=85.7

Q ss_pred             eEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEe
Q psy7040         383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  462 (716)
Q Consensus       383 ~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~  462 (716)
                      .+.|.++...+.+.|+|.|.|..|.+..+..... .+.....+|.+....  ...+.+|+.+.|.|...+.+.+.+.|++
T Consensus        65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l-~V~~~~~~P~i~~~p--~~~v~~G~~v~L~C~~~~~~~~~~~W~k  141 (218)
T 1uct_A           65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLEL-VVTGLYGKPFLSADR--GLVLMPGENISLTCSSAHIPFDRFSLAK  141 (218)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEEECCCEEE-EEECSSCCCEEEESS--CSEECTTCCCEEEEECSSSCCSEEEEEE
T ss_pred             EEEEcccccccCEEEEEEEEcCCCceeecCCEEE-EEcCcccCCEEEeCC--CCccCCCCCEEEEEeCCCCCCCEEEEEE
Confidence            8999999999999999999998764443433222 222223355543221  3467899999999977788888999999


Q ss_pred             CCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         463 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      ++..+...    .........|.|.++...|.|.|+|.|.|..
T Consensus       142 ~g~~~~~~----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          142 EGELSLPQ----HQSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             TTCSSCCS----EEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCCccccc----ccCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            99776431    1233456789999999999999999999864

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.66  E-value=1.1e-07  Score=75.68  Aligned_cols=90  Identities=20%  Similarity=0.372  Sum_probs=65.7

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +|.+. ..+....+..|..+.|.|.+.+.|.+.+.|++++..+.....+.+..  ....|.|.++...|.|.|+|.|.|.
T Consensus        10 ~P~~~-~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n~   86 (108)
T 3kvq_A           10 APTIT-GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACSV   86 (108)
T ss_dssp             -CCCB-SCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET--TTTEEEECSCCGGGCEEEEEEEC--
T ss_pred             CCcee-cCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC--CCcEEEEeecCcccCEEEEEEEEeC
Confidence            44443 23456789999999999999999999999999998887666665543  3457999999999999999999999


Q ss_pred             CCceeeEEEEEEE
Q psy7040         505 WGTDKGTAKVTVL  517 (716)
Q Consensus       505 ~g~~~~s~~~~v~  517 (716)
                      .|....+..+.+.
T Consensus        87 ~g~~~~~~~l~V~   99 (108)
T 3kvq_A           87 LGCAKVEAFFIIE   99 (108)
T ss_dssp             --CEEEEEEEEEE
T ss_pred             CCceEEEEEEEEe
Confidence            9998887777665

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.66  E-value=5.4e-07  Score=80.55  Aligned_cols=151  Identities=15%  Similarity=0.200  Sum_probs=97.2

Q ss_pred             ccEEEecCCeEEEEEEEec-cCCCeEEEEeCCeEec---cC---------------CcEEEEeCCCeEEEEECCCCCCCc
Q psy7040         434 SDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITII---SK---------------DRFKIVNDDKSTKLKVFDSKRGDS  494 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~~~~~---~~---------------~~~~~~~~~~~~~l~i~~l~~~~~  494 (716)
                      ..+.+..|+.+.|.|.+.+ .+.+.+.|++++..+.   ..               .++.+.   ...+|.|.++...|.
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~   82 (193)
T 2if7_A            6 LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKMEDT   82 (193)
T ss_dssp             EEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGGGC
T ss_pred             eEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcccC
Confidence            4578899999999999875 5567999999875432   10               122222   246799999999999


Q ss_pred             eeEEEEEEcCCCceeeEEEEEEE----EEEEEEeCCCCCCCC--ceeeEEEEEEecCCCceeeeEEEccceeeeeccccc
Q psy7040         495 GIYTLAVKNSWGTDKGTAKVTVL----GCSLKWNPPEDDGGA--PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDY  568 (716)
Q Consensus       495 ~~y~~~a~n~~g~~~~s~~~~v~----~v~l~W~~p~~~~~~--~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  568 (716)
                      |.|+|.+.|..|.......+.|.    ...+.-......+|.  ....|.+..   ..+.+.+.|++.+.....      
T Consensus        83 G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g---~~p~p~i~W~~~g~~l~~------  153 (193)
T 2if7_A           83 GSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVED---ADDNVSFRWEALGNTLSS------  153 (193)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEES---CCTTCEEEEEETTEEEES------
T ss_pred             ceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEec---CCCceEEEEEeCCEEcCC------
Confidence            99999999998876666666665    233333221111221  233333322   123566999998754321      


Q ss_pred             eeEEEEcCCCCC-CeEEEEEEEEcCCCCC
Q psy7040         569 FTKITIRPLQRS-DTAQYTVTATNSQGKD  596 (716)
Q Consensus       569 ~~~~~i~~L~~~-~~y~~~v~a~n~~G~~  596 (716)
                      ...+.|...... +.+.|+|.|.|..|..
T Consensus       154 ~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          154 QPNLTVSWDPRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             SSEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred             CCeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence            144566433333 6899999999998864

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.66  E-value=5.3e-07  Score=82.57  Aligned_cols=129  Identities=15%  Similarity=0.116  Sum_probs=91.5

Q ss_pred             CCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeec----------CCCCCcccccccccEEEecCCeEEEEE
Q psy7040         379 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA----------KKVSPYINRDQLSDIKVRAGSNFEFDI  448 (716)
Q Consensus       379 ~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~----------~~~~P~~~~~~~~~~~~~~g~~~~~~~  448 (716)
                      .....+.|.++...+.+.|+|.+.|..|..........+....          ...+|.+. ..+....+..|..+.|.|
T Consensus        62 ~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~G~~v~L~C  140 (218)
T 3k0w_A           62 GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC-VEPTSQKLMPGSTLVLQC  140 (218)
T ss_dssp             CCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEE-ECCCCEEECTTCCEEEEC
T ss_pred             CCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEE-ECCCceeecCCCcEEEEE
Confidence            3456899999999999999999999876421111111111110          00113322 234457788999999999


Q ss_pred             EEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCc-eeeEEEEEEE
Q psy7040         449 NVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKGTAKVTVL  517 (716)
Q Consensus       449 ~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~-~~~s~~~~v~  517 (716)
                      .+.+.|.+.+.|++++..+....         ...|.|.++...|.|.|+|.|.|..|. .+..+.+.+.
T Consensus       141 ~~~g~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          141 VAVGSPIPHYQWFKNELPLTHET---------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             EEEBSSCCEEEEEETTEECTTCC---------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             EecccCCCeEEEEECCEECCCCC---------CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence            99999999999999998875432         347999999999999999999998886 3444444444

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=1.3e-07  Score=76.60  Aligned_cols=89  Identities=24%  Similarity=0.385  Sum_probs=71.8

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +|.+. ..+..+.+..|..+.|.|.+.+.|.+.+.|++++..+.. ..++.+...+   .|.|.++...|.|.|+|.|.|
T Consensus         8 pP~i~-~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n   83 (118)
T 2eo9_A            8 PPVIR-QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIAST   83 (118)
T ss_dssp             SCCCS-BCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEEEC
T ss_pred             CCEEE-cCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEEEc
Confidence            44443 345668899999999999999999999999999988753 4555554433   799999999999999999999


Q ss_pred             CCCceeeEEEEEEE
Q psy7040         504 SWGTDKGTAKVTVL  517 (716)
Q Consensus       504 ~~g~~~~s~~~~v~  517 (716)
                      ..|....+..+.+.
T Consensus        84 ~~g~~~~~~~l~V~   97 (118)
T 2eo9_A           84 PSGEATWSAYIEVQ   97 (118)
T ss_dssp             SSCEEEEECCEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            99987766666555

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.65  E-value=6.3e-08  Score=77.76  Aligned_cols=85  Identities=16%  Similarity=0.257  Sum_probs=66.2

Q ss_pred             cccEEEecCCeEEEEEEEecc---CCCeEEEEeCCeE-ec--cCCcEEEEe--CC----CeEEEEECCCCCCCceeEEEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGE---PIPTKEWLCNDIT-II--SKDRFKIVN--DD----KSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~---p~~~~~W~~~~~~-~~--~~~~~~~~~--~~----~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      +.++.+.+|..+.|.|.+.+.   |.|.+.|+|+... +.  ...++.+..  ..    ....|.|.++.+.|.|.|+|.
T Consensus        14 P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Ce   93 (126)
T 2dav_A           14 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCE   93 (126)
T ss_dssp             CCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEE
T ss_pred             CCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEE
Confidence            456789999999999999876   8899999997421 11  133444432  11    247899999999999999999


Q ss_pred             EEcCCCceeeEEEEEEE
Q psy7040         501 VKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       501 a~n~~g~~~~s~~~~v~  517 (716)
                      |.|..|..+..+.+.|.
T Consensus        94 vsn~~g~~~~~~~L~V~  110 (126)
T 2dav_A           94 VTYKDKFDSCSFDLEVH  110 (126)
T ss_dssp             EECSSCEEEECCEEEEE
T ss_pred             EEeCCCcEEEEEEEEEE
Confidence            99999998888877776

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=4.9e-08  Score=78.10  Aligned_cols=92  Identities=22%  Similarity=0.356  Sum_probs=73.3

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEE-eCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +|.+.. .+..+.+..|..+.|.|.+.+.|.+.+.|++++..+.......+. .......|.|.++...|.|.|+|.|.|
T Consensus         9 ~P~i~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   87 (110)
T 2dm3_A            9 RPHFLQ-APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN   87 (110)
T ss_dssp             CCEEEE-CCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred             CCcEEe-CCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence            444432 245678999999999999999999999999999888765554443 334457899999999999999999999


Q ss_pred             CCCceeeEEEEEEE
Q psy7040         504 SWGTDKGTAKVTVL  517 (716)
Q Consensus       504 ~~g~~~~s~~~~v~  517 (716)
                      ..|....++.+.|.
T Consensus        88 ~~g~~~~~~~l~V~  101 (110)
T 2dm3_A           88 RAGQNSFSLELVVA  101 (110)
T ss_dssp             SSCEEEECCEEEEE
T ss_pred             CCCEEEEEEEEEEe
Confidence            99987766666554

>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens}

Probab=98.64  E-value=1.4e-07  Score=73.34  Aligned_cols=77  Identities=12%  Similarity=0.128  Sum_probs=60.9

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      ..|.+|.++++...+.+++.|+|.+|...++ .+..|+|.|.....  .   .......+.++|.+|.|++.|.|+|+|.
T Consensus         6 ~~Ps~v~~l~v~~~t~~Sv~LsW~~p~~~~~-~i~~Y~v~~~~~~~--~---~~~~~~~t~~~i~gL~PgT~Y~~~V~A~   79 (104)
T 2dle_A            6 SGAIQVFDVTAVNISATSLTLIWKVSDNESS-SNYTYKIHVAGETD--S---SNLNVSEPRAVIPGLRSSTFYNITVCPV   79 (104)
T ss_dssp             SSCCBEEEEEEEEECSSCEEEEEEESCSTTC-CSCEEEEEEECSSC--E---EEEEESSSEEECCSCCSSCEEEEEEEEE
T ss_pred             CCCCCCceEEEEEeecCEEEEEEcCCCCCCC-ceEEEEEEEECCCC--e---EEEcCCCCEEEECCCCCCCEEEEEEEEE
Confidence            5688899999999999999999997654433 46789999986432  1   1234567899999999999999999999


Q ss_pred             eCC
Q psy7040         403 NKG  405 (716)
Q Consensus       403 n~~  405 (716)
                      ...
T Consensus        80 ~~~   82 (104)
T 2dle_A           80 LGD   82 (104)
T ss_dssp             SSS
T ss_pred             ECC
Confidence            543

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C*

Probab=98.62  E-value=1.4e-06  Score=78.03  Aligned_cols=90  Identities=16%  Similarity=0.186  Sum_probs=68.4

Q ss_pred             CCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEE
Q psy7040         222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV  301 (716)
Q Consensus       222 ~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~  301 (716)
                      +|.||.+ |.+.......+.|+|..|.. .  ....|.|+++......|.....  .....+.|.+|.|++.|.++|+|.
T Consensus        98 kP~pP~~-l~~~~~~~~~l~l~W~~p~~-~--~~l~yev~y~~~~~~~w~~~~~--~~~~~~~l~~l~p~~~Y~vqVR~~  171 (199)
T 2b5i_C           98 IPWAPEN-LTLHKLSESQLELNWNNRFL-N--HCLEHLVQYRTDWDHSWTEQSV--DYRHKFSLPSVDGQKRYTFRVRSR  171 (199)
T ss_dssp             ECCCCEE-EEEEEEETTEEEEEEECSSC-S--TTCEEEEEEEETTCSSCEEEEE--CSSCEEEECSCCTTSCEEEEEEEE
T ss_pred             ecCCCcE-EEEEECCCCCEEEEECCCCC-C--CceEEEEEEeecCCcccEEEec--cCceEEEecCCCCCcEEEEEEEEe
Confidence            6888887 88888777899999998752 1  2458999999877778876543  335789999999999999999999


Q ss_pred             cCCC---CCCCCcccceEE
Q psy7040         302 NKQG---KSEPLTTTASIE  317 (716)
Q Consensus       302 n~~g---~~~~~~~~~~~~  317 (716)
                      ...|   .+.+|..+..+.
T Consensus       172 ~~~~~~~~g~WSeWS~~~~  190 (199)
T 2b5i_C          172 FNPLCGSAQHWSEWSHPIH  190 (199)
T ss_dssp             CCSSSCCCCCCCCCCCCEE
T ss_pred             ccCCcCcCCeECCCCCCEE
Confidence            8542   444555554343

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.62  E-value=1.4e-07  Score=87.49  Aligned_cols=136  Identities=17%  Similarity=0.258  Sum_probs=97.6

Q ss_pred             CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEE
Q psy7040         380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE  459 (716)
Q Consensus       380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~  459 (716)
                      ....+.|.++...+.+.|+|.+.|..|....+  ...........+|.+.........+..|..+.|.|.+.+.|.+.+.
T Consensus        74 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~--~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~  151 (231)
T 3ojm_B           74 QHWSLIMESVVPSDKGNYTCVVENEYGSINHT--YHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQ  151 (231)
T ss_dssp             GGTEEEECSCCGGGCEEEEEEEEETTEEEEEE--EEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEE
T ss_pred             CcceEEEecCCcccCEEEEEEEecccCccccc--EEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEE
Confidence            34578999999999999999999987653211  1111122222344444444567889999999999999999999999


Q ss_pred             EEe----CCeEeccCCcE--EEEe-----CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         460 WLC----NDITIISKDRF--KIVN-----DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       460 W~~----~~~~~~~~~~~--~~~~-----~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      |++    ++..+......  ....     ......|.|.++...|.|.|+|.|.|..|....+..+.+.
T Consensus       152 W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  220 (231)
T 3ojm_B          152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL  220 (231)
T ss_dssp             EEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEe
Confidence            999    66665433221  1111     1233579999999999999999999999988777776665

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum}

Probab=98.61  E-value=1.9e-07  Score=72.41  Aligned_cols=86  Identities=16%  Similarity=0.179  Sum_probs=66.7

Q ss_pred             CCCCCCCCcEEEee-eCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDF-DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       323 ~~p~~p~~~~~~~~-~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      .+|.+|.++.+... ..+.+.|+|.++.     ...+|.|+........|..... .....+|+..+|.+|+.|.|+|+|
T Consensus         3 ~~P~aP~~l~a~~~~~~~~v~LsW~~~~-----~~~~Y~VyR~~~~~~~~~~i~~-~~~~tsy~d~~l~~g~~Y~Y~V~A   76 (103)
T 3mpc_A            3 SAPAFPTGLSAVLDSSGNTANLTWNAAP-----GANSYNVKRSTKSGGPYTTIAT-NITSTNYTDTGVATGTKYYYVVSA   76 (103)
T ss_dssp             CCCCCCEEEEEEECTTSCCEEEEEECCT-----TCSEEEEEEESSTTCCCEEEEE-EECSSEEEETTCCTTCCCEEEEEE
T ss_pred             cCCCCCceeEEEEeCCCCEEEEEEECCC-----CCCEEEEEEecCCCCCcEEEee-cCCCCEEEECCCCCCCEEEEEEEE
Confidence            46888999998875 4679999999842     2588999887655556665443 245689999999999999999999


Q ss_pred             EeCCCCCCCCCCC
Q psy7040         402 VNKGGPGEPSDPT  414 (716)
Q Consensus       402 ~n~~g~~~~s~~~  414 (716)
                      +|..|.|.+|...
T Consensus        77 vn~~geS~~S~~v   89 (103)
T 3mpc_A           77 VSNGVETLNSAEA   89 (103)
T ss_dssp             EETTEECCCCCCE
T ss_pred             EeCcCCcCCCccE
Confidence            9987787776543

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.61  E-value=2.2e-07  Score=72.29  Aligned_cols=87  Identities=20%  Similarity=0.269  Sum_probs=66.8

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +|.+....+..+.+..|+.+.|.|.+. +.|.+.+.|++++........  ...   ...|.|.++...|.|.|+|.|.|
T Consensus         9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~~~---~~~L~i~~v~~~D~G~Y~C~a~n   83 (98)
T 1gl4_B            9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDF---NGILTIRNVQPSDAGTYVCTGSN   83 (98)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--EEE---TTEEEECSCCGGGCEEEEEEEEC
T ss_pred             CcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCcee--ecC---CCEEEEeCCChhhCEEEEEEecC
Confidence            344444445677899999999999998 689999999997544332221  122   23799999999999999999999


Q ss_pred             CCCceeeEEEEEE
Q psy7040         504 SWGTDKGTAKVTV  516 (716)
Q Consensus       504 ~~g~~~~s~~~~v  516 (716)
                      ..|....+..+.+
T Consensus        84 ~~g~~~~~~~l~V   96 (98)
T 1gl4_B           84 MFAMDQGTATLHV   96 (98)
T ss_dssp             SSCEEEEEEEEEE
T ss_pred             CCCccccEEEEEE
Confidence            9998887777665

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.61  E-value=1.6e-07  Score=85.67  Aligned_cols=126  Identities=21%  Similarity=0.226  Sum_probs=87.7

Q ss_pred             EEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEE-eccCCCeEEEEe
Q psy7040         384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTKEWLC  462 (716)
Q Consensus       384 ~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v-~~~p~~~~~W~~  462 (716)
                      +.+.++...+.+.|+|.|.|..|.......  ...+..  .+|.+ ...+....+..|..+.|.|.+ .+.|.+.+.|++
T Consensus        74 l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~--~l~V~~--~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~  148 (212)
T 2v9r_A           74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDA--SLEVAI--LRDDF-RQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK  148 (212)
T ss_dssp             CCCCSSCCCSCEEEEEEEEETTEEEECCCE--EEEECE--ECSSC-SBCCCCEEEETTSCEEEECBCCCEESCCEEEEEE
T ss_pred             EEecCCCcccCeEEEEEEECCCCceeecce--EEEEEe--ccccc-eeCCCceEecCCCcEEEEEecCCCCCCCEEEEEE
Confidence            334556788899999999998764321111  111111  02221 223446788999999999999 999999999999


Q ss_pred             CCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE-EEEEEE
Q psy7040         463 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTVL  517 (716)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s-~~~~v~  517 (716)
                      ++..+...........   ..|.|.++...|.|.|+|.|.|..|..... +.+.+.
T Consensus       149 ~~~~l~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~  201 (212)
T 2v9r_A          149 DGSPLDDKDERITIRG---GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL  201 (212)
T ss_dssp             TTEEECTTSTTEEEET---TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCccCCCCcceEEccC---CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE
Confidence            9998875443222222   379999999999999999999999875432 555544

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.60  E-value=2.5e-07  Score=80.61  Aligned_cols=147  Identities=14%  Similarity=0.181  Sum_probs=95.2

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc--CCcE--------EEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS--KDRF--------KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~--~~~~--------~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      .+.+..|+.+.|.|.+. .|.+.+.|++++..+..  ....        ++..+....+|.|.++...|.|.|.|.|.|.
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            46788999999999985 48889999998864321  0000        1222223458999999999999999999998


Q ss_pred             CCceeeEEEEEEE----EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCC
Q psy7040         505 WGTDKGTAKVTVL----GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRS  580 (716)
Q Consensus       505 ~g~~~~s~~~~v~----~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~  580 (716)
                      .|  .....+.|.    ...+.+....    .     .+.......+.+.+.|++.+.......    ...+.+.  ..+
T Consensus        83 ~~--~~~~~L~V~~~~~~p~i~~~~~~----~-----~L~C~~~~~p~p~i~W~~~~~~l~~~~----~~~l~~~--~~~  145 (171)
T 1ccz_A           83 TD--TMKFFLYVLEMVSKPMIYWECSN----A-----TLTCEVLEGTDVELKLYQGKEHLRSLR----QKTMSYQ--WTN  145 (171)
T ss_dssp             CS--CEEEEEEEECCCCCCEEEEETTT----T-----EEEEECSSCSSCEEEEEETTEEEEEES----SSEEEEE--CSC
T ss_pred             CC--cEEEEEEEECcCCCCEEEEecCC----c-----EEEEEeCCCCCcEEEEEECCEECcCCc----ceEEEEe--ccC
Confidence            88  455555554    2233333221    1     233333333556799998876554221    1233333  367


Q ss_pred             CeEEEEEEEEcCCCCCccc
Q psy7040         581 DTAQYTVTATNSQGKDQVF  599 (716)
Q Consensus       581 ~~y~~~v~a~n~~G~~~~s  599 (716)
                      +.+.|+|.|.|..|.....
T Consensus       146 ~~g~Y~C~a~N~~~~~~~~  164 (171)
T 1ccz_A          146 LRAPFKCKAVNRVSQESEM  164 (171)
T ss_dssp             CSSCEEEEEEETTEEEEEE
T ss_pred             CCceEEEEEEcccCcccce
Confidence            7889999999998864443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	716
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	4e-22
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	1e-09
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	2e-09
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	1e-04
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	6e-04
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	3e-20
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	5e-18
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	2e-16
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	5e-20
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	2e-18
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	1e-12
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	1e-18
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	7e-17
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	2e-14
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	1e-17
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	6e-15
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	2e-11
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	7e-17
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	3e-16
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	1e-15
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	5e-05
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	1e-16
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	4e-16
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	1e-12
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	1e-16
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	7e-15
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	4e-12
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	7e-16
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	6e-13
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	1e-10
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	7e-16
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	2e-12
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	4e-12
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	1e-15
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	4e-14
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	6e-13
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	4e-15
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	5e-12
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	7e-12
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	5e-15
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	1e-12
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	5e-09
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	7e-15
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-13
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-11
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	1e-14
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	5e-13
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	2e-11
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	2e-14
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	1e-12
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	2e-11
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	2e-14
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	3e-14
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	2e-10
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	2e-14
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	3e-12
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	4e-11
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	0.001
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	3e-14
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	7e-13
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	7e-11
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	4e-05
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-09
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-09
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	8e-09
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	4e-14
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	1e-12
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	7e-12
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	7e-14
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	8e-12
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	2e-07
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	1e-13
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	5e-12
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	2e-11
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	2e-13
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	2e-13
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	2e-12
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	3e-13
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	1e-12
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	3e-12
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	3e-13
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	1e-11
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	4e-11
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	4e-13
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	4e-09
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	3e-07
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	7e-13
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	4e-10
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	2e-09
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	8e-13
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-11
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-10
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	9e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	5e-04
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	0.002
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	1e-12
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	1e-11
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	1e-08
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	1e-12
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	1e-11
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	2e-11
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-12
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	8e-11
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-07
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	3e-12
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	8e-12
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	8e-10
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	4e-12
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	1e-10
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	9e-09
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	4e-12
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	2e-10
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	3e-09
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	7e-12
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	9e-10
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	2e-08
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	9e-12
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	6e-08
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	9e-07
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	1e-11
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	1e-11
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	2e-08
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	1e-11
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	6e-10
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	1e-07
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	1e-11
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	2e-10
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	1e-05
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-11
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-11
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-09
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	2e-11
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	1e-10
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	3e-09
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	6e-11
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	2e-09
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	3e-09
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	7e-11
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	1e-08
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	4e-07
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	8e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	5e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	0.002
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	8e-11
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-08
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	8e-08
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	1e-10
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	5e-09
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	9e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-10
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	0.001
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	0.001
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-10
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-06
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	1e-10
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	5e-09
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	1e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	8e-04
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	0.001
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	0.002
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	2e-10
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	1e-07
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	3e-06
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	0.002
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	0.002
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	2e-10
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	2e-09
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	8e-07
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	3e-10
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	5e-08
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	1e-07
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	3e-10
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	2e-09
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	8e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-10
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.004
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	3e-10
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	3e-08
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	3e-08
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-10
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	5e-10
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	4e-09
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	9e-07
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	5e-10
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	7e-09
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	1e-08
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	5e-10
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	5e-09
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	8e-09
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	6e-10
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	1e-07
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	1e-05
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	9e-10
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	2e-07
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	2e-06
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	1e-09
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	3e-07
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	3e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-09
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	1e-09
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	3e-09
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	2e-08
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	1e-09
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	3e-08
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	2e-06
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	2e-09
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	1e-05
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	7e-05
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-09
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	2e-09
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	1e-08
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	7e-06
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	2e-09
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	4e-08
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	1e-07
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	4e-09
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	5e-06
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	9e-06
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	4e-09
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	2e-08
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	4e-07
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	7e-09
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	2e-07
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	7e-05
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	1e-08
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	2e-08
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	1e-06
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-08
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-08
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-05
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	2e-08
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	5e-08
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	9e-08
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	2e-08
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	4e-06
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	6e-06
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	7e-08
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	7e-08
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	5e-06
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	1e-05
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	9e-08
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	3e-07
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	8e-04
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	1e-07
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	1e-05
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	8e-05
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	1e-07
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	9e-06
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	1e-05
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	3e-07
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	6e-06
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	1e-04
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	4e-07
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	4e-07
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	1e-06
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	1e-05
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	5e-07
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	7e-06
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	8e-06
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	5e-07
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	4e-06
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	6e-05
d1erna2	105	b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor	8e-07
d1erna2	105	b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor	0.002
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	9e-07
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	2e-06
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	4e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-06
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-06
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-06
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-05
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	2e-06
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	6e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	8e-05
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	5e-04
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	0.001
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	6e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	7e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	7e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	7e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	8e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	7e-04
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-05
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	3e-05
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	4e-05
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	0.001
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	5e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	7e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	2e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	2e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	5e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	4e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.003
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.004
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	5e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	8e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	8e-04
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	9e-04
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	0.001

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.6 bits (228), Expect = 4e-22
 Identities = 29/205 (14%), Positives = 56/205 (27%), Gaps = 15/205 (7%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
            PS P  P    +  +  + L WK P D  G  I  Y+V    +A        +      
Sbjct: 2   NPSVPLDP-ISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDY----- 54

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPL----TTTASIEAKNPFNQPGKPGTPEIKDFD 337
                  +P+  +     + + Q  ++              K       +      +   
Sbjct: 55  -CLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTF 113

Query: 338 TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
            D++      P  +     +G +       +    +  +   +     +  L     Y  
Sbjct: 114 EDYLHNVVFVPRPSRKRRSLGDV---GNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRI 170

Query: 398 RVLAVNKGGPGEPSDPTAPHIARAK 422
            + A N+  P E     A   AR  
Sbjct: 171 ELQACNQDTPEERCSVAAYVSARTM 195

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 17/172 (9%), Positives = 36/172 (20%), Gaps = 5/172 (2%)

Query: 148 RDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENI 207
            DP    T        +  +                +                  +    
Sbjct: 27  SDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKH-NQSEYED 85

Query: 208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
           +  +                          + +     VP     +     V +  +   
Sbjct: 86  SAGECCSCPKTDSQILKELEES-SFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEE 144

Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
            R     E       L + GL     Y+  ++A N+    E  +  A + A+
Sbjct: 145 HRPF---EKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSAR 193

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 1/92 (1%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
                      +D        P+        G +    + E           +  + ++G
Sbjct: 103 ELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEK-VVNKESLVISG 161

Query: 117 LTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
           L     Y+  ++A N++   E     + + AR
Sbjct: 162 LRHFTGYRIELQACNQDTPEERCSVAAYVSAR 193

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 5/104 (4%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
                    +       LKW  P D  G  +  YLV          +             
Sbjct: 4   SVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFE----LDYCLKG 58

Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSS 159
              P   +    ++ + +  ++     S+          + +  
Sbjct: 59  LKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILK 102

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 18/168 (10%), Positives = 41/168 (24%), Gaps = 9/168 (5%)

Query: 521 LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRS 580
           LKW PP D  G  I +Y+V          L +          +  +   ++    P +  
Sbjct: 21  LKWKPPSDPNG-NITHYLVFWERQAEDSELFELDY------CLKGLKLPSRTWSPPFESE 73

Query: 581 DTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLM 640
           D+ ++  +       +        +      E           +   +           +
Sbjct: 74  DSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSL 133

Query: 641 PISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
                +      +            + I  L+     +  + A N   
Sbjct: 134 GDVGNAGNNEEHRPFEKVVNK--ESLVISGLRHFTGYRIELQACNQDT 179

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.2 bits (207), Expect = 3e-20
 Identities = 27/96 (28%), Positives = 39/96 (40%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
              P    ++D       L W PP++ G   I GY++E   + S  W    +   +    
Sbjct: 2   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 61

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
            V DL  G +  FRV+ VN  G  EP+    P   R
Sbjct: 62  TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 97

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.6 bits (190), Expect = 5e-18
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            S P     V +V     TL W+ PD  G   I+ Y+V+   E +  W PA +      G
Sbjct: 2   TSAPQHL-TVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 60

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
             V+ L    +  FRV  VN  G+SEP T    +  +
Sbjct: 61  FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 97

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.0 bits (178), Expect = 2e-16
 Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 2/96 (2%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEMD 113
                L V ++     TLKW  P   G   ++GYLVE     +  W+P  K         
Sbjct: 3   SAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFT 62

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARD 149
           V  L  G    FRV  +N  G SEP      +  R+
Sbjct: 63  VKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRE 98

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (206), Expect = 5e-20
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 215 VEVIVLDKPSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPA 273
             + V   P  P  P   +S V    + L W  P D G  P+ +Y+++  +         
Sbjct: 3   AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSENNAPWTVLL 61

Query: 274 GETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
              +   T + V+GL+P   Y+FR+ AVN  GK +    T  +
Sbjct: 62  ASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 104

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 2e-18
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 325 PGKPGTP--EIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTP 382
           P  P  P   +   +   + L WT P  +G SP++ YI+E  E  +P     A  +    
Sbjct: 11  PHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKAT 69

Query: 383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
              V  L+    Y+FR+ AVN  G G+ S  T  
Sbjct: 70  SVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTER 103

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 1e-12
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 57  PEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
           PE P   +S + +    L W KP  DG  PL  Y++E  +      + +         VT
Sbjct: 14  PEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVT 72

Query: 116 --GLTPGHEYKFRVKALNKEGESEPLETFSSIIARD 149
             GL P   Y+FR+ A+N  G+ +  +    +   +
Sbjct: 73  VKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 108

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (196), Expect = 1e-18
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTE- 378
              + P  P  P I       V + W P   NGG PI  + +E K+         A +  
Sbjct: 6   GRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAI 64

Query: 379 -GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
                  ++  L +G  Y+FRV A+N  G  EPS P+ P++  
Sbjct: 65  PPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.4 bits (182), Expect = 7e-17
 Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-EG 278
           L  P  P  P  +S      V + W    + G       V  K  +  G W  A      
Sbjct: 8   LSPPEAPDRP-TISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPP 66

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
               +E+ GL     YKFRVRA+N  G+SEP   +      
Sbjct: 67  SRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.5 bits (164), Expect = 2e-14
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT---REPEM 112
           +      +S   +    + W    + G       +  K   + G WI            +
Sbjct: 12  EAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSV 71

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
           ++TGL  G  YKFRV+ALN  GESEP       +  
Sbjct: 72  EITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 1e-17
 Identities = 21/90 (23%), Positives = 34/90 (37%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P         T F++L W  P  +     + Y +   ++          +     + 
Sbjct: 11  PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 70

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            + +L+    Y FRV+A NK G GE S P 
Sbjct: 71  TIQNLMPATVYIFRVMAQNKHGSGESSAPL 100

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 6e-15
 Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
             PS P   +  S V    + L W+ P  D       Y V    E   R      +    
Sbjct: 9   PLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGE 67

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
             + ++ L+P   Y FRV A NK G  E 
Sbjct: 68  MQVTIQNLMPATVYIFRVMAQNKHGSGES 96

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 2e-11
 Identities = 19/90 (21%), Positives = 24/90 (26%), Gaps = 2/90 (2%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVGKTREPEMD 113
                +  S +      L W  P  D       Y V                   E ++ 
Sbjct: 12  SAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVT 71

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFS 143
           +  L P   Y FRV A NK G  E      
Sbjct: 72  IQNLMPATVYIFRVMAQNKHGSGESSAPLR 101

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 7e-17
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 325 PGKPGTPEIKDFDT-DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
           PG    P ++       ++L W PP  +GGSPI  Y +E          +    +G   +
Sbjct: 2   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV--YQGSEVE 59

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
             V  L+ G  Y FR+ A NK G G  S+  
Sbjct: 60  CTVSSLLPGKTYSFRLRAANKMGFGPFSEKC 90

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 3e-16
 Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           P P   P       A+ + L W  P  DGG PI  Y V+               +G    
Sbjct: 2   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPRE--VYQGSEVE 59

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
             V  L+P   Y FR+RA NK G        
Sbjct: 60  CTVSSLLPGKTYSFRLRAANKMGFGPFSEKC 90

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 1e-15
 Identities = 27/85 (31%), Positives = 33/85 (38%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
              P            L+W  P  DGG P+  Y VE    E      V +  E E  V+ 
Sbjct: 5   CLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSS 64

Query: 117 LTPGHEYKFRVKALNKEGESEPLET 141
           L PG  Y FR++A NK G     E 
Sbjct: 65  LLPGKTYSFRLRAANKMGFGPFSEK 89

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT 570
             +       L+W PP  DGG+PI  Y VE    +  +   +  + ++   T+ ++    
Sbjct: 11  QGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEP-REVYQGSEVECTVSSLLPGK 69

Query: 571 KITIRPLQRSDTAQYTVTATNSQG 594
             + R           + A N  G
Sbjct: 70  TYSFR-----------LRAANKMG 82

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 1e-16
 Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 2/109 (1%)

Query: 211 DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW 270
            S      + D P PP  P +V++V    VTL W+             +       +  W
Sbjct: 4   GSSGKNYDLSDLPGPPSKP-QVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSW 62

Query: 271 TPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
                     T   V GL PN  Y F VRA+N QG S+P   +  +  +
Sbjct: 63  QTV-ANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 4e-16
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           PG P  P++ D   + V L+W P       P   YIIE   +      +       T   
Sbjct: 16  PGPPSKPQVTDVTKNSVTLSWQPGTPGT-LPASAYIIEAFSQSVSNSWQTVANHVKTTLY 74

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
            V  L     Y F V A+N  G  +PS  + P   +
Sbjct: 75  TVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 1e-12
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 1/95 (1%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK-TREPEMDV 114
            P    +V+++ K+  TL W              +       +  W  V    +     V
Sbjct: 17  GPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTV 76

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLETFSSIIARD 149
            GL P   Y F V+A+N +G S+P      +  +D
Sbjct: 77  RGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 1e-16
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 303 KQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIE 362
           + G   P  +   I  +   + PG P      +  T  V L W PP    G  +   I  
Sbjct: 1   RIGDGSP--SHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITH 58

Query: 363 KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           +    +              +     L   + Y FR+ A  + G GE ++  
Sbjct: 59  RLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 110

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 7e-15
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 1/93 (1%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
           D P PP G +    V    V L W+ P    G  +   +  +++  T             
Sbjct: 19  DVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSA 77

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
                 GL P   Y FR+ A  ++G  E     
Sbjct: 78  RQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 110

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 4e-12
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEMD 113
            P   +    +      L W  P    G  L   +  + +  T     V        +  
Sbjct: 22  GPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYT 81

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
            TGL P   Y FR+ A  ++G  E  E 
Sbjct: 82  ATGLKPESVYLFRITAQTRKGWGEAAEA 109

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 7e-16
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 316 IEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCA 375
              +   + PG  G     +     ++++W  P +  G  + GY I  +E          
Sbjct: 2   QLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTH 60

Query: 376 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
                T + +V  L     Y   V A+   G G+ S  T
Sbjct: 61  YLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 99

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 6e-13
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
           D P P G  L  S +    + + W+ P +  G  +  Y +   +                
Sbjct: 9   DVPGPVG-HLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVT 66

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
               V GL     Y   V A+  +G+ +   +T
Sbjct: 67  LEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 99

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI--PVGKTREPEMD 113
            P G L  S I      + W +P +  G  L GY +   +                 E  
Sbjct: 12  GPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEYR 70

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
           VTGLT    Y   V A+  +G+ +   +
Sbjct: 71  VTGLTALTTYTIEVAAMTSKGQGQVSAS 98

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 7e-16
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
             DKP  P  P     +H+    + W  P D+GG  I KYVV+  + + G       + G
Sbjct: 7   CPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS-G 65

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNP 321
                  + L P   Y+ RV  ++  G+S     + S+  + P
Sbjct: 66  ATREHLCDRLNPGCFYRLRVYCISDGGQSAV---SESLLVQTP 105

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 2e-12
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEK-YDPETGVWIPVGKTREPEMDVT 115
           P  P     IH     + W+ PKD+GG  +  Y+VE         W  +      E    
Sbjct: 14  PVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCD 73

Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
            L PG  Y+ RV  ++  G+S   E+   ++ + P
Sbjct: 74  RLNPGCFYRLRVYCISDGGQSAVSES---LLVQTP 105

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 4e-12
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 325 PGKPGTPEIK-DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
           PG P  P +K    +   ++ W PP+ NGG+ I  Y++E  E  +    +   + G T +
Sbjct: 11  PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS-GATRE 69

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
                L  G  Y  RV  ++ GG    S+  
Sbjct: 70  HLCDRLNPGCFYRLRVYCISDGGQSAVSESL 100

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 1e-15
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
             PPG P    N+    VTL W  P+  GG  I  Y+V+K D   GRW  A  +      
Sbjct: 3   IDPPGKP-VPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 61

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGK-SEPLTTTASIEAKNPF 322
             V GL  +  Y+FRV A N  G  S P   + +I  ++  
Sbjct: 62  FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 102

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 4e-14
 Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
              PG P   +     V L W  PE  GG  I  YI+EK++  +  W K   +     + 
Sbjct: 3   IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 62

Query: 385 KVLDLIEGNQYEFRVLAVNKGGP-GEPSDPTAPHIAR 420
            V  L E   YEFRV+A N  G    PS+P+     R
Sbjct: 63  TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 99

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 6e-13
 Identities = 38/99 (38%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
           DP G     NI +   TLKW KP+  GG  +  Y+VEK D   G W+    +   E + T
Sbjct: 4   DPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 63

Query: 116 --GLTPGHEYKFRVKALNKEGE-SEPLETFSSIIARDPY 151
             GLT    Y+FRV A N  G  S P E   +I  RD  
Sbjct: 64  VSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 102

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 4e-15
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 316 IEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCA 375
           +E +     PG              + + W  P    G  I  Y +   EK +   +   
Sbjct: 2   VETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVD 60

Query: 376 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
                +    +  L +  +Y FRV+A NK GPG  +   
Sbjct: 61  V---SSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 96

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 5e-12
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
           +  P P    L+        +T+ W+ P    G+ I+ Y +  M++ T +       +  
Sbjct: 8   VQLPGPAPN-LRAYAASPTSITVTWETPVSGNGE-IQNYKLYYMEKGTDKEQD---VDVS 62

Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
                + GL    +Y FRV A NK G    
Sbjct: 63  SHSYTINGLKKYTEYSFRVVAYNKHGPGVS 92

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 7e-12
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
            P   L          T+ W  P    G  ++ Y +   +  T     V         + 
Sbjct: 12  GPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDV-DVSSHSYTIN 69

Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFS 143
           GL    EY FRV A NK G        +
Sbjct: 70  GLKKYTEYSFRVVAYNKHGPGVSTPDVA 97

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 5e-15
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 315 SIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE-- 372
           +I +  P   PG P    I +     V L + P   +G + I  +++E +       E  
Sbjct: 1   TISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEW 59

Query: 373 ---KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
                   E D    +V DL     Y FR+  VN  G   PS P+  
Sbjct: 60  LLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRK 106

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 1e-12
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE----- 275
           + P PP     +SN+    VTL ++   D     I +++V+      G            
Sbjct: 9   ELPGPPTNL-GISNIGPRSVTLQFRPGYDGKT-SISRWLVEAQVGVVGEGEEWLLIHQLS 66

Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
            E     +EV  L P   Y FR+R VN  G S P   +  I
Sbjct: 67  NEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 107

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 5e-09
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV------GKTRE 109
            P   L +SNI     TL++    D         +  +          +       +   
Sbjct: 12  GPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDA 71

Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSI 145
             M+V  L P   Y FR++ +N  G S P +    I
Sbjct: 72  RSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 107

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 7e-15
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
           +D+P      L  ++V  + + + W+ P     +    Y   +     G        +G 
Sbjct: 2   IDRPKG----LAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPED----GIHELFPAPDGE 53

Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
               E++GL P  +Y   V A++   +S+PL  T S
Sbjct: 54  EDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQS 89

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           +D    L  +++  D   + W  P+         Y   +         P G+      ++
Sbjct: 2   IDRPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDT--AEL 59

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET 141
            GL PG EY   V AL+ + ES+PL  
Sbjct: 60  QGLRPGSEYTVSVVALHDDMESQPLIG 86

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKV 386
           +P      D D D +++AW  P+         Y +        I E     +G+    ++
Sbjct: 4   RPKGLAFTDVDVDSIKIAWESPQGQVSR----YRVTYSSPEDGIHELFPAPDGEEDTAEL 59

Query: 387 LDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
             L  G++Y   V+A++     +P   T 
Sbjct: 60  QGLRPGSEYTVSVVALHDDMESQPLIGTQ 88

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 1e-14
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P +      +      V L W  PEQ  G  I+ Y I+  EK   +    +  +  T + 
Sbjct: 4   PSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQ-SYSTLKAVTTRA 61

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            V  L  G +Y F+V A    G G  S   
Sbjct: 62  TVSGLKPGTRYVFQVRARTSAGCGRFSQAM 91

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 5e-13
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           PS     ++        V+L W+ P+   G  I +Y +   ++     +     +   T 
Sbjct: 4   PSQVVV-IRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSY-STLKAVTTR 60

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEP 309
             V GL P  +Y F+VRA    G    
Sbjct: 61  ATVSGLKPGTRYVFQVRARTSAGCGRF 87

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 17/88 (19%), Positives = 28/88 (31%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
                +      +   +L W +P+   G  LE  +      +        K       V+
Sbjct: 5   SQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVS 64

Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFS 143
           GL PG  Y F+V+A    G     +   
Sbjct: 65  GLKPGTRYVFQVRARTSAGCGRFSQAME 92

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 2e-14
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
             P G +  S++ A   T+ W  P       I  Y +    E                 +
Sbjct: 2   DSPTG-IDFSDITANSFTVHWIAPRA----TITGYRIRHHPEHFSGRPREDRVPHSRNSI 56

Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
            +  L P  +Y   + A+N + +S  L    S
Sbjct: 57  TLTNLTPGTEYVVSIVALNGREESPLLIGQQS 88

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 1e-12
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEM 112
           LD    ++ S+I  +  T+ W  P+      + GY +  +           +       +
Sbjct: 1   LDSPTGIDFSDITANSFTVHWIAPRA----TITGYRIRHHPEHFSGRPREDRVPHSRNSI 56

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLET 141
            +T LTPG EY   + ALN   ES  L  
Sbjct: 57  TLTNLTPGTEYVVSIVALNGREESPLLIG 85

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P   +  D   +   + W  P     + I GY I    ++     +  +         + 
Sbjct: 4   PTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLT 59

Query: 388 DLIEGNQYEFRVLAVNKGGPGEP 410
           +L  G +Y   ++A+N       
Sbjct: 60  NLTPGTEYVVSIVALNGREESPL 82

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.2 bits (163), Expect = 2e-14
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
           +D P      L+V +  A  + L+W   + +  +    Y     ++      P  +  GP
Sbjct: 1   IDAPKN----LRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVP--KGIGP 54

Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE 317
            T   +  L+P  +Y   + AV    +S P T  A  E
Sbjct: 55  TTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTE 92

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.4 bits (161), Expect = 3e-14
 Identities = 19/87 (21%), Positives = 32/87 (36%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           +D    L V +       L+W+  + +  E    Y     +    V +P G     +  +
Sbjct: 1   IDAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTL 60

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET 141
           T L PG EY   + A+    +S P   
Sbjct: 61  TDLVPGTEYGVGISAVMNSKQSIPATM 87

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 2/88 (2%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P    +       ++L W   E       V Y     E+Y        +  G T K  + 
Sbjct: 4   PKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYH--EVLVPKGIGPTTKTTLT 61

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
           DL+ G +Y   + AV       P+   A
Sbjct: 62  DLVPGTEYGVGISAVMNSKQSIPATMNA 89

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 2e-14
 Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 14/134 (10%)

Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
           G +  +    +L     P      S++ A  V L W  P        ++  V ++     
Sbjct: 7   GDEETKAFEALLSNIVKP----VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEV 62

Query: 269 RWTPAGETE-------GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNP 321
             +  G+         G  T + +  L P   Y  +V+A     K  P   + +      
Sbjct: 63  LISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTP---SEAEIFTTL 119

Query: 322 FNQPGKPGTPEIKD 335
             +P  P  P I  
Sbjct: 120 SCEPDIPNPPRISG 133

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 3e-12
 Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 7/122 (5%)

Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW 371
           ++   E K           P   D     V L W+PP            + +   Y  + 
Sbjct: 5   SSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLI 64

Query: 372 EKCAQTE-------GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKV 424
               +         G+     + DL     Y  +V A      G PS+         +  
Sbjct: 65  SSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD 124

Query: 425 SP 426
            P
Sbjct: 125 IP 126

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 4e-11
 Identities = 17/107 (15%), Positives = 29/107 (27%), Gaps = 9/107 (8%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYD---------PETGVWIPVG 105
           L        S+I      L W+ P        +   V +            + G +  V 
Sbjct: 18  LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVY 77

Query: 106 KTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS 152
              E  + +  L P  +Y  +V+A     +  P E            
Sbjct: 78  VGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD 124

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 3/101 (2%)

Query: 514 VTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKIT 573
           +      L W+PP        +   V ++      +         K V +      T IT
Sbjct: 29  IQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEE---TNIT 85

Query: 574 IRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
           +  L+ +      V A  +  K       + T     P+ P
Sbjct: 86  LNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIP 126

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 3e-14
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           PG+P T  I     +   L W PP++  G  ++GY ++                 D    
Sbjct: 1   PGRP-TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTI-DFGKDDQHF 57

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            V  L +G  Y FR+ A N+ G GE  +   
Sbjct: 58  TVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 88

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 7e-13
 Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 4/94 (4%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           P  P   + +S        L W  P +  G  +  Y +        R     +       
Sbjct: 1   PGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNT-IDFGKDDQH 56

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
             V GL     Y FR+ A N+ G  E        
Sbjct: 57  FTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT 90

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 7e-11
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 60  PLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-REPEMDVTGLT 118
            + +S    +   L+W+ PK+  G  L GY ++    +      +     +    VTGL 
Sbjct: 5   TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLH 63

Query: 119 PGHEYKFRVKALNKEGESEPLETFSSI 145
            G  Y FR+ A N+ G  E  E     
Sbjct: 64  KGTTYIFRLAAKNRAGLGEEFEKEIRT 90

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT 570
            +   +    L+W+PP++  G  +  Y ++    D  +        +D+  T+  +   T
Sbjct: 8   ISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGT 66

Query: 571 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
               R           + A N  G  + F + + T
Sbjct: 67  TYIFR-----------LAAKNRAGLGEEFEKEIRT 90

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 4e-14
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 431 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 490
               D KVRAG + E    V G    T  W+     I   +  K+ N +  +KL +  ++
Sbjct: 5   QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAAR 64

Query: 491 RGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAP 533
           +   G YTL V+N  G+ +    +TV+    K +PP    G P
Sbjct: 65  QEHCGCYTLLVENKLGSRQAQVNLTVVD---KPDPPA---GTP 101

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 167 NQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
            +        KV++ +  +KL +  A++   G YT+  EN  G    +V + V+DKP PP
Sbjct: 38  RKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 97

Query: 227 GG 228
            G
Sbjct: 98  AG 99

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 647 QYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
           + +   + + ++N +  +K+TI   ++     YT+   N  G  Q  + + V DKP  P 
Sbjct: 39  KQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 98

Query: 707 G 707
           G
Sbjct: 99  G 99

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 8e-09
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 553 WIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 612
                 + + ++N +  +K+TI   ++     YT+   N  G  Q  + + V DKP  P 
Sbjct: 39  KQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 98

Query: 613 G 613
           G
Sbjct: 99  G 99

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 4e-14
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
           +D PS     L+        + + W+ P       I  Y++      +            
Sbjct: 1   IDAPSN----LRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPG 52

Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
           VT   + GL P  +Y   V A+    KSEPL     
Sbjct: 53  VTEATITGLEPGTEYTIYVIALKNNQKSEPLIGRKK 88

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 1e-12
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEM 112
           +D    L       +   + W  P+        GY+++   P +     V +      E 
Sbjct: 1   IDAPSNLRFLATTPNSLLVSWQPPRARIT----GYIIKYEKPGSPPREVVPRPRPGVTEA 56

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLET 141
            +TGL PG EY   V AL    +SEPL  
Sbjct: 57  TITGLEPGTEYTIYVIALKNNQKSEPLIG 85

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 7e-12
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P          + + ++W PP       I GYII+ ++  SP  E   +      +  + 
Sbjct: 4   PSNLRFLATTPNSLLVSWQPPRA----RITGYIIKYEKPGSPPREVVPRPRPGVTEATIT 59

Query: 388 DLIEGNQYEFRVLAVNKGGPGEP 410
            L  G +Y   V+A+      EP
Sbjct: 60  GLEPGTEYTIYVIALKNNQKSEP 82

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 7e-14
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 5/122 (4%)

Query: 214 EVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWK-VPDDDGGQPIEKYVVDKMDEATGRWT 271
           +V V  L D PS     L +   +++ + + W+          I  Y +     +     
Sbjct: 1   DVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDV 60

Query: 272 PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP 331
                 G      +EGL    +Y FRV A+   G       T  + A+   +   +   P
Sbjct: 61  TETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPA---TDWLSAETFESDLDETRVP 117

Query: 332 EI 333
           E+
Sbjct: 118 EV 119

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 8e-12
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 1/91 (1%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTP-PEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
              P    ++  ++  + + W P         I GY I  ++             G    
Sbjct: 12  SAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLS 71

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
             +  L  G +Y FRV A+   G G  +D  
Sbjct: 72  QLIEGLDRGTEYNFRVAALTINGTGPATDWL 102

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 6/93 (6%)

Query: 57  PEGP---LEVSNIHKDGCTLKWN-KPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEM 112
           P      L +   +     + W           + GY +          +        ++
Sbjct: 11  PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQL 70

Query: 113 DV--TGLTPGHEYKFRVKALNKEGESEPLETFS 143
                GL  G EY FRV AL   G     +  S
Sbjct: 71  SQLIEGLDRGTEYNFRVAALTINGTGPATDWLS 103

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 1e-13
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P  P I +   + + L W  P  NG S I  +++E  E      E C    G   + 
Sbjct: 11  PDIPNPPRIANRTKNSLTLQWKAPSDNG-SKIQNFVLEWDEGKGN-GEFCQCYMGSQKQF 68

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 419
           K+  L      +FR+ A N  G    S+    + +
Sbjct: 69  KITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 103

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 5e-12
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 214 EVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPA 273
           E+   +  +P  P  P +++N     +TL WK P D+G   I+ +V+ + DE  G     
Sbjct: 2   EIFTTLSCEPDIPNPP-RIANRTKNSLTLQWKAPSDNGS-KIQNFVL-EWDEGKGNGEFC 58

Query: 274 GETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
               G     ++  L P    KFR+ A N  G S  
Sbjct: 59  QCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGF 94

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 2e-11
 Identities = 23/88 (26%), Positives = 35/88 (39%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
           D   P  ++N  K+  TL+W  P D+G +     L        G +       + +  +T
Sbjct: 12  DIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKIT 71

Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFS 143
            L+P    KFR+ A N  G S   E   
Sbjct: 72  KLSPAMGCKFRLSARNDYGTSGFSEEVL 99

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           PG+P   + +      + L+WTPP  +    I  Y +  K+      ++   T       
Sbjct: 11  PGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRI--TIEPGTSY 65

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           ++  L   + Y FR+ A +  G G  +   
Sbjct: 66  RLQGLKPNSLYYFRLAARSPQGLGASTAEI 95

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 216 EVIVLDKPSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPA 273
           ++ V+ +   PG P   K        + L W  P  D    I  Y +   D   G     
Sbjct: 1   DIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRI 57

Query: 274 GETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
             T  P T   ++GL PN  Y FR+ A + QG    
Sbjct: 58  --TIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGAS 91

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 3/88 (3%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
                 +     +    L W  P+ D    +  Y +   D E G    +         + 
Sbjct: 12  GQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIEPGTSYRLQ 68

Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFS 143
           GL P   Y FR+ A + +G        S
Sbjct: 69  GLKPNSLYYFRLAARSPQGLGASTAEIS 96

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 3e-13
 Identities = 12/97 (12%), Positives = 22/97 (22%), Gaps = 1/97 (1%)

Query: 327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKV 386
            P    I+ ++ + + + W              +     K S   + C            
Sbjct: 3   TPTNVTIESYNMNPI-VYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISD 61

Query: 387 LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 423
                 N    RV A         +      + R  K
Sbjct: 62  HVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDGK 98

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 9/97 (9%), Positives = 26/97 (26%), Gaps = 1/97 (1%)

Query: 225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
           P    + + + +     + W+             V +   + +               + 
Sbjct: 2   PTPTNVTIESYNMN-PIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNIS 60

Query: 285 VEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNP 321
                P++    RV+A   Q +S    +      ++ 
Sbjct: 61  DHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDG 97

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 3e-12
 Identities = 10/92 (10%), Positives = 24/92 (26%), Gaps = 3/92 (3%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVGKTREPEMDVTGLT 118
           + + + + +   + W              +       +               +      
Sbjct: 7   VTIESYNMN-PIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGD 65

Query: 119 PGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
           P +    RVKA   + ES   ++    + RD 
Sbjct: 66  PSNSLWVRVKARVGQKESAYAKSEEFAVCRDG 97

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.3 bits (155), Expect = 3e-13
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 13/105 (12%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ----------- 376
           P  P +     + V L W  P  +G  PIV + ++ +        +              
Sbjct: 3   PTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 61

Query: 377 -TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
              G +    V DL   + Y FR+LAV      + S+ +A    +
Sbjct: 62  SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 106

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.7 bits (143), Expect = 1e-11
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 12/106 (11%)

Query: 225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-------- 276
           PP  P  V+ +  E V L W VP +DG   +   V  +M      W    +         
Sbjct: 2   PPTPP-NVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 60

Query: 277 ---EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
               G      V  L P H Y+FR+ AV     ++   T+A    +
Sbjct: 61  NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 106

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--------- 107
           P  P  V+ +  +   L+W  P++DG   +   +  +   +   W               
Sbjct: 2   PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 61

Query: 108 ----REPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
               +     VT L P H Y+FR+ A+    +++   T +    +
Sbjct: 62  SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 106

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (154), Expect = 4e-13
 Identities = 12/101 (11%), Positives = 29/101 (28%)

Query: 320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG 379
            P         P++       + L+W P + +        +  + +     W        
Sbjct: 3   EPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPS 62

Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
              + ++  L +   Y  ++  +    PG  S  +     R
Sbjct: 63  SKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 103

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 4e-09
 Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 2/102 (1%)

Query: 220 LDKPSPPGGPLK--VSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277
           L+ P      +   V +     + L WK          E  +  +       WT      
Sbjct: 2   LEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLP 61

Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
                 E+ GL     Y  ++R +           +  ++ +
Sbjct: 62  SSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 103

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 2/96 (2%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP--EM 112
              +   +V +       L W   K       E  L  +   +   W  V        + 
Sbjct: 8   QALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQF 67

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
           ++ GL     Y  +++ +              +  R
Sbjct: 68  ELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 103

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 7e-13
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
           PP   L+ +N+  + + + W  P       +  ++V                      + 
Sbjct: 2   PPPTDLRFTNIGPDTMRVTWAPPPSI---DLTNFLVRYSPVKNEEDVAELSISPSDNAVV 58

Query: 285 VEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
           +  L+P  +Y   V +V +Q +S PL     
Sbjct: 59  LTNLLPGTEYVVSVSSVYEQHESTPLRGRQK 89

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 3/88 (3%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P      +   D + + W PP       +  +++      +                 + 
Sbjct: 4   PTDLRFTNIGPDTMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 60

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
           +L+ G +Y   V +V +     P     
Sbjct: 61  NLLPGTEYVVSVSSVYEQHESTPLRGRQ 88

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD- 113
           + P   L  +NI  D   + W  P       L  +LV     +    +        +   
Sbjct: 1   VPPPTDLRFTNIGPDTMRVTWAPPPSI---DLTNFLVRYSPVKNEEDVAELSISPSDNAV 57

Query: 114 -VTGLTPGHEYKFRVKALNKEGESEPLET 141
            +T L PG EY   V ++ ++ ES PL  
Sbjct: 58  VLTNLLPGTEYVVSVSSVYEQHESTPLRG 86

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 8e-13
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 4/90 (4%)

Query: 230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLI 289
           L+V       + + W  P       +  Y +   +             G  +   + GL 
Sbjct: 3   LEVVAATPTSLLISWDAPAV----TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLK 58

Query: 290 PNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
           P   Y   V AV  +G S   +   SI  +
Sbjct: 59  PGVDYTITVYAVTGRGDSPASSKPISINYR 88

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 3e-11
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEMDVTGLT 118
           LEV         + W+ P          Y +   +      +        +    ++GL 
Sbjct: 3   LEVVAATPTSLLISWDAPAVTVR----YYRITYGETGGNSPVQEFTVPGSKSTATISGLK 58

Query: 119 PGHEYKFRVKALNKEGESEPLETFSSIIAR 148
           PG +Y   V A+   G+S       SI  R
Sbjct: 59  PGVDYTITVYAVTGRGDSPASSKPISINYR 88

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 16/89 (17%), Positives = 23/89 (25%), Gaps = 4/89 (4%)

Query: 332 EIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIE 391
           E+       + ++W  P       +  Y I   E       +     G      +  L  
Sbjct: 4   EVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKP 59

Query: 392 GNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
           G  Y   V AV   G    S        R
Sbjct: 60  GVDYTITVYAVTGRGDSPASSKPISINYR 88

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 9e-13
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 415 APHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK 474
           AP+    +K+             V A +  +F     G P+PT  WL N      + R  
Sbjct: 1   APYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG 53

Query: 475 IVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
                ++   L +      D G YT  V+N +G+   T  + V+
Sbjct: 54  GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 10/57 (17%), Positives = 20/57 (35%)

Query: 164 KRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
           K   +      +   +  + +  L +     +D G YT   EN  G  +    + V+
Sbjct: 41  KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 8/53 (15%), Positives = 15/53 (28%)

Query: 552 KWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           K  +   +       +    + +  +  SD   YT    N  G       + V
Sbjct: 44  KEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.2 bits (150), Expect = 1e-12
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
            P G +  S++     T+ W  P          YV               +T       +
Sbjct: 3   SPKG-ISFSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTR-----TK 56

Query: 285 VEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
           +  L+P   Y   + +V    +SEP++    
Sbjct: 57  LVKLVPGVDYNVNIISVKGFEESEPISGILK 87

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.1 bits (142), Expect = 1e-11
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
           +  S+I ++  T+ W  P+         Y+         V +   KTR     +  L PG
Sbjct: 7   ISFSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTR---TKLVKLVPG 63

Query: 121 HEYKFRVKALNKEGESEPLET 141
            +Y   + ++    ESEP+  
Sbjct: 64  VDYNVNIISVKGFEESEPISG 84

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGK 385
           G P      D   +   ++WTPP     S    Y +                +G   + K
Sbjct: 2   GSPKGISFSDITENSATVSWTPPRSRVDS----YRVSYVPITGG-TPNVVTVDGSKTRTK 56

Query: 386 VLDLIEGNQYEFRVLAVNKGGPGEP 410
           ++ L+ G  Y   +++V      EP
Sbjct: 57  LVKLVPGVDYNVNIISVKGFEESEP 81

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 1e-12
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P +P +      ++ L W+ P        + YI+E +E+ S    K      D    
Sbjct: 1   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL-AY 59

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            V +L    +Y+F+V+A N  G   PS+  
Sbjct: 60  TVKNLRRSTKYKFKVIAYNSEGKSNPSEVV 89

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           PS P  P  ++      ++L W  P          Y+++  +E +G      + +G    
Sbjct: 1   PSMPASP-VLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKP-KYDGEDLA 58

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
             V+ L  + KYKF+V A N +GKS P    
Sbjct: 59  YTVKNLRRSTKYKFKVIAYNSEGKSNPSEVV 89

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 2e-11
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE-KYDPETGVWIPVGKTREPEMDV 114
                  ++       +L+W+KP     +    Y++E + +     + P     +    V
Sbjct: 2   SMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTV 61

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLETFSSIIARD 149
             L    +YKF+V A N EG+S P E        D
Sbjct: 62  KNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPD 96

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 1e-12
 Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 2/124 (1%)

Query: 208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
           +   S      V D P+PP   L++++   + V L W   DD+     +  +  +     
Sbjct: 2   SSGSSGPTPAPVYDVPNPPFD-LELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHK 60

Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGK 327
                               L P   Y FRV AVN  GKS P   +     K        
Sbjct: 61  PGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK-ASEPDKN 119

Query: 328 PGTP 331
           P + 
Sbjct: 120 PTSG 123

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 8e-11
 Identities = 26/97 (26%), Positives = 39/97 (40%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P   E+ D     V+L+WTP + N        I  +   + P           T   
Sbjct: 17  PNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT 76

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 421
             L+L     Y FRV+AVN  G   PS+ +  ++ +A
Sbjct: 77  AQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVGKTREPEMD 113
           +P   LE+++       L W    D+     +  +  +               +      
Sbjct: 18  NPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTA 77

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARD--PYSKYTSVSS 159
              L+P   Y FRV A+N  G+S P E     + +   P    TS  S
Sbjct: 78  QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPS 125

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.6 bits (146), Expect = 3e-12
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
           D    LEVS+  +   +L+W +P          Y +    P                 + 
Sbjct: 1   DNPKDLEVSDPTETTLSLRWRRPVAKFD----RYRLTYVSPSGKKNEMEIPVDSTSFILR 56

Query: 116 GLTPGHEYKFRVKALNKEGESEPLET 141
           GL  G EY   + A     +S+P   
Sbjct: 57  GLDAGTEYTISLVAEKGRHKSKPTTI 82

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.5 bits (143), Expect = 8e-12
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLI 289
           L+VS+     ++L W+ P     +    YV     +               T   + GL 
Sbjct: 6   LEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEMEIP------VDSTSFILRGLD 59

Query: 290 PNHKYKFRVRAVNKQGKSEPLTTTAS 315
              +Y   + A   + KS+P T   S
Sbjct: 60  AGTEYTISLVAEKGRHKSKPTTIKGS 85

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.1 bits (129), Expect = 8e-10
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 6/88 (6%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P   E+ D     + L W  P     +    Y +          E       D+    + 
Sbjct: 3   PKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEME--IPVDSTSFILR 56

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            L  G +Y   ++A       +P+    
Sbjct: 57  GLDAGTEYTISLVAEKGRHKSKPTTIKG 84

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 4e-12
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQN-GGSPIVGYIIEKKEKYSPIWEKCAQTE----G 379
            G P    ++   +  +++ W  P++      I GY I  +E       + +  E    G
Sbjct: 9   DGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATG 68

Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           D+    + +L +  QY   V A N+ G G  S   
Sbjct: 69  DSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 103

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 1e-10
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPD-DDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
             P  P   + +  V ++ + + WK P  +     I  Y +   + + G        E  
Sbjct: 6   AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 65

Query: 280 VTG----LEVEGLIPNHKYKFRVRAVNKQGKSEP 309
            TG      ++ L    +Y   V+A N+ G    
Sbjct: 66  ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS 99

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 9e-09
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 10/97 (10%)

Query: 57  PEGP---LEVSNIHKDGCTLKWNKP-KDDGGEPLEGYLVEKYDPETGVWIPVGKTR---- 108
           P+GP   + +  +      + W  P K+     + GY +   +   G             
Sbjct: 8   PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKAT 67

Query: 109 --EPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFS 143
                  +  L    +Y   V+A N+ G        +
Sbjct: 68  GDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEIN 104

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 4e-12
 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 4/91 (4%)

Query: 225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
           P    LK + V    ++  W  P+        +    +                  + + 
Sbjct: 1   PAPTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTG----PMKEINLAPDSSSVV 56

Query: 285 VEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
           V GL+   KY+  V A+     S P     +
Sbjct: 57  VSGLMVATKYEVSVYALKDTLTSRPAQGVVT 87

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 2e-10
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 2/85 (2%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
               L+ + +     + +W  P             ++             +    + V+G
Sbjct: 2   APTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDSSS--VVVSG 59

Query: 117 LTPGHEYKFRVKALNKEGESEPLET 141
           L    +Y+  V AL     S P + 
Sbjct: 60  LMVATKYEVSVYALKDTLTSRPAQG 84

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 4/88 (4%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P   +        +   WTPP          Y +    K      K      D+    V 
Sbjct: 3   PTDLKFTQVTPTSLSAQWTPPNVQLTG----YRVRVTPKEKTGPMKEINLAPDSSSVVVS 58

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            L+   +YE  V A+       P+    
Sbjct: 59  GLMVATKYEVSVYALKDTLTSRPAQGVV 86

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 7e-12
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
           SPP    +V++     +T+ W+   +         V         R              
Sbjct: 3   SPPRR-ARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRS-----Y 56

Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
            + GL P   YK  +  +N   +S P+   AS
Sbjct: 57  TITGLQPGTDYKIYLYTLNDNARSSPVVIDAS 88

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 9e-10
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 3/87 (3%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           + P     V++  +   T+ W    +         +           I           +
Sbjct: 2   VSPPRRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVR---SYTI 58

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET 141
           TGL PG +YK  +  LN    S P+  
Sbjct: 59  TGLQPGTDYKIYLYTLNDNARSSPVVI 85

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P    + D     + ++W          I G+ ++          +      D     + 
Sbjct: 5   PRRARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRTIK-PDVRSYTIT 59

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            L  G  Y+  +  +N      P    A
Sbjct: 60  GLQPGTDYKIYLYTLNDNARSSPVVIDA 87

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 9e-12
 Identities = 15/101 (14%), Positives = 32/101 (31%)

Query: 320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG 379
            P        +PE        ++L+W P +          +  K ++    W        
Sbjct: 2   EPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPL 61

Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
           +  + ++  L+    Y  ++  +    PG  SD +     R
Sbjct: 62  EALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 102

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-08
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 1/97 (1%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            +    P + +   A  + L W+          +  +  K       W   G        
Sbjct: 7   RTMDPSP-EAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQ 65

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
            E+ GL+P   Y  ++R +           + S+E +
Sbjct: 66  YELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 102

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 9e-07
 Identities = 11/96 (11%), Positives = 25/96 (26%), Gaps = 2/96 (2%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG--VWIPVGKTREPEM 112
              +   E +        L W   +       +  L  K          +        + 
Sbjct: 7   RTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQY 66

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
           ++ GL P   Y  +++ +         +   S+  R
Sbjct: 67  ELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 102

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.1 bits (142), Expect = 1e-11
 Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           LD    L V+   +   +L W K                    + V +P  +T      +
Sbjct: 1   LDSPRDLMVTASSETSISLIWTKASGPIDHYRI-TFTPSSGISSEVTVPRDRT---SYTL 56

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET 141
           T L PG EY   + A     +S     
Sbjct: 57  TDLEPGAEYIISITAERGRQQSLESTV 83

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.7 bits (141), Expect = 1e-11
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 7/91 (7%)

Query: 224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
             P   L V+      ++L W             +       +     P   T   +T L
Sbjct: 2   DSPRD-LMVTASSETSISLIWTKASGPIDHYRITFTPSSGISSE-VTVPRDRTSYTLTDL 59

Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA 314
           E     P  +Y   + A   + +S   T  A
Sbjct: 60  E-----PGAEYIISITAERGRQQSLESTVDA 85

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 17/88 (19%), Positives = 22/88 (25%), Gaps = 6/88 (6%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P    +       + L WT        PI  Y I          E       D     + 
Sbjct: 4   PRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEVT--VPRDRTSYTLT 57

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
           DL  G +Y   + A         S   A
Sbjct: 58  DLEPGAEYIISITAERGRQQSLESTVDA 85

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 54  GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD 113
           GL+    LE   +      L W +P         GYL+  + P       +         
Sbjct: 1   GLEAPRDLEAKEVTPRTALLTWTEPPVRPA----GYLLSFHTPGGQTQEILLPGGITSHQ 56

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
           + GL P   Y  R++A+  +    P+ T
Sbjct: 57  LLGLFPSTSYNARLQAMWGQSLLPPVST 84

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 6e-10
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
             P   L+   V      L W  P       +  +            T      G +T  
Sbjct: 3   EAPRD-LEAKEVTPRTALLTWTEPPVRPAGYLLSFHTPGG------QTQEILLPGGITSH 55

Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
           ++ GL P+  Y  R++A+  Q    P++T+ +
Sbjct: 56  QLLGLFPSTSYNARLQAMWGQSLLPPVSTSFT 87

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 6/88 (6%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P   E K+       L WT P       ++ +             +     G     ++L
Sbjct: 5   PRDLEAKEVTPRTALLTWTEPPVRPAGYLLSF------HTPGGQTQEILLPGGITSHQLL 58

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            L     Y  R+ A+       P   + 
Sbjct: 59  GLFPSTSYNARLQAMWGQSLLPPVSTSF 86

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 218 IVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277
           IV D P+ P          A+   + W+   D+    +   +          W  A E  
Sbjct: 1   IVQDVPNAPKLT--GITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKV 58

Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
                  V  + P   Y FRV A NK G S P   + S   +
Sbjct: 59  PNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P    I     D  E+ W     N    +   I          W+   +   +T   
Sbjct: 6   PNAPKLTGITC-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSS 64

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
            V+ +     Y FRV+A NK G   PS  +     +
Sbjct: 65  FVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT---REPEM 112
           +      ++    D   + W +  D+   P+  Y ++     T                 
Sbjct: 7   NAPKLTGITCQ-ADKAEIHWEQQGDNR-SPILHYTIQFNTSFTPASWDAAYEKVPNTDSS 64

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
            V  ++P   Y FRV A NK G S P     S   +
Sbjct: 65  FVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTP-PEQNGGSPIVGYIIEKKEKYSP-------IWEKCAQ 376
              PG   +   ++   E+ W P P ++    + GY I   +  S        I +K   
Sbjct: 15  MVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILT 74

Query: 377 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            +G    G +  L   + Y   V  VN  G G  S   
Sbjct: 75  FQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDR 112

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 4e-11
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 11/117 (9%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWK-VPDDDGGQPIEKYVVDKMDEATGRW-------TP 272
           D P    G ++V+ V++    + W  VP       ++ Y +      +            
Sbjct: 12  DLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71

Query: 273 AGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPG 329
               +G  T   + GL P   Y   VR VN +G+      +       P       G
Sbjct: 72  ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPA---SPDRVFNTPEGSGPSSG 125

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 4e-09
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 40  GGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWN-KPKDDGGEPLEGYLVEKYDPET 98
           G     G+  E D  +   G + V+ ++     + W+  P       L+GY +  +  ++
Sbjct: 1   GSSGSSGHSGE-DLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQS 59

Query: 99  GVW---------IPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFS 143
                       I   +  +    + GL P   Y   V+ +N +GE        
Sbjct: 60  SSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRV 113

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 2e-11
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE----GPV 280
           P    L V++V    + L+W+ P       + ++ V           P  + E    G  
Sbjct: 5   PRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTR 64

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
               +  L     Y   +  +    K++ +  TA 
Sbjct: 65  HSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTAR 99

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 1e-10
 Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 14/95 (14%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP------ 110
               L V+++      L W  P          +L+    P      P  +          
Sbjct: 6   RLSQLSVTDVTTSSLRLNWEAPPGAFD----SFLLRFGVPSPSTLEPHPRPLLQRELMVP 61

Query: 111 ----EMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
                  +  L  G  Y   +  L    +++ ++ 
Sbjct: 62  GTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQG 96

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY----SPIWEKCAQTEGD 380
             +     + D  T  + L W  P     S ++ + +           P+ ++     G 
Sbjct: 4   RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 63

Query: 381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
                + DL  G  Y   +  +      +    TA
Sbjct: 64  RHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 98

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 6e-11
 Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 5/94 (5%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
           +   P   ++V +V      + W  P  +       Y      +         +      
Sbjct: 1   RLDAPSQ-IEVKDVTDTTALITWFKPLAEIDGIELTY----GIKDVPGDRTTIDLTEDEN 55

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
              +  L P+ +Y+  + +      S P   T +
Sbjct: 56  QYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT 89

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           LD    +EV ++      + W KP  +       Y ++    +           +  +  
Sbjct: 2   LDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSI-- 59

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET 141
             L P  EY+  + +   +  S P + 
Sbjct: 60  GNLKPDTEYEVSLISRRGDMSSNPAKE 86

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
           +   P   E+KD       + W  P       I G  +    K  P          D  +
Sbjct: 1   RLDAPSQIEVKDVTDTTALITWFKPLAE----IDGIELTYGIKDVPGDRTTIDLTEDENQ 56

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
             + +L    +YE  +++        P+  T 
Sbjct: 57  YSIGNLKPDTEYEVSLISRRGDMSSNPAKETF 88

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 7e-11
 Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 324 QPGKPGTPEIKD--FDTDFVELAWTP-PEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGD 380
           QP  P    +     +  ++ + W      N     + + +  + + S  +      +  
Sbjct: 1   QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ 60

Query: 381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 419
                + D   G ++  ++ A  + G GE S+ +   + 
Sbjct: 61  H-HCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMG 98

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 10/101 (9%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 222 KPSPPGGPLKVSNVHAEG--VTLDWK-VPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
           +P PP   + V+ V      +++ W+     +      ++ +        +       + 
Sbjct: 1   QPDPPAN-ITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELR-YRAERSKTFTTWMVKD 58

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
                 +       ++  ++RA  + G+ E    +      
Sbjct: 59  LQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGT 99

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 12/96 (12%), Positives = 31/96 (32%), Gaps = 4/96 (4%)

Query: 56  DPEGPLEVSNIHKDGCTL----KWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPE 111
           DP   + V+ + ++   L    +     +     L   L  + +        + K  +  
Sbjct: 3   DPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHH 62

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIA 147
             +     G  +  +++A  + G+ E  E     + 
Sbjct: 63  CVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMG 98

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 56.7 bits (136), Expect = 8e-11
 Identities = 22/92 (23%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKL 484
           +P   +     I V+ G +      V G P P   W  N    +S  R  + +      L
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNA-KPLSGGRATVTDSG----L 56

Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            +   K GD G Y     N  G       V V
Sbjct: 57  VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 10/54 (18%), Positives = 16/54 (29%)

Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           + W                + + I+ ++  D   Y   ATN  G       V V
Sbjct: 35  VVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
           +    ++ L ++  +  D G+Y   A N +G    E  V V
Sbjct: 48  RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 666 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
           + I+ ++  D   Y   ATN  G       V V
Sbjct: 56  LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 8e-11
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 3/91 (3%)

Query: 225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
           P    L   ++    + L W   +      I  Y +  +    G        +  V    
Sbjct: 7   PQLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYT 63

Query: 285 VEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
           V GL P   Y   V  +   G+S P T T  
Sbjct: 64  VTGLEPGIDYDISVITLINGGESAPTTLTQQ 94

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 3/88 (3%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
                  D     + L WTP      S I+GY I        I       +       V 
Sbjct: 9   LTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVT 65

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            L  G  Y+  V+ +  GG   P+  T 
Sbjct: 66  GLEPGIDYDISVITLINGGESAPTTLTQ 93

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 8e-08
 Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEM 112
           +     L   +I      L+W          + GY +       G+ I            
Sbjct: 6   VPQLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYY 62

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLET 141
            VTGL PG +Y   V  L   GES P   
Sbjct: 63  TVTGLEPGIDYDISVITLINGGESAPTTL 91

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 4/93 (4%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            SPP      +N     +T+ W+         I  Y +        +     E       
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 283 -LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA 314
               + L P  +Y   V  V    +S P++ T 
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTI 91

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 5e-09
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 55  LDPEGPLEVSNI-HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT---REP 110
           L P   L +         T+ W +        + GY +            + +     + 
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
                 L+PG EY   V  +  + ES P+  
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISD 89

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 9e-09
 Identities = 15/80 (18%), Positives = 21/80 (26%), Gaps = 4/80 (5%)

Query: 337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT-EGDTPKGKVLDLIEGNQY 395
           DT  + ++W          I GY I              +    D       +L  G +Y
Sbjct: 15  DTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEY 71

Query: 396 EFRVLAVNKGGPGEPSDPTA 415
              V  V       P   T 
Sbjct: 72  NVSVYTVKDDKESVPISDTI 91

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 424 VSPYIN-RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK--DRFKIVNDDK 480
           V P +  R  + +     G +     +  G P PT  W  +   I ++  D  K +  D 
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 61

Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
           S++L + +  + D   Y    +N  G    +  + V  
Sbjct: 62  SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
           D +++L +R   + D   Y   AEN  G+    + + V  K
Sbjct: 60  DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 553 WIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 607
                +        D  +++TIR + ++D A+Y   A N  G+    I + V  K
Sbjct: 46  IENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
             +        D  +++TIR + ++D A+Y   A N  G+    I + V  K
Sbjct: 49  EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 33/129 (25%)

Query: 422 KKVSPYINRDQLS----DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII--------- 468
           ++  P I+ D        I V AG+    D+ + G+P PT  W                 
Sbjct: 1   RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPD 60

Query: 469 --------------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 508
                               ++ R ++      +   V  +++ D G+YT+ VKN  G D
Sbjct: 61  APEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED 120

Query: 509 KGTAKVTVL 517
           +    V V+
Sbjct: 121 QVNLTVKVI 129

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 19/88 (21%), Positives = 32/88 (36%)

Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
                         P      +  ++D      K +   + RV ++     +  T+   +
Sbjct: 43  WQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAE 102

Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTD 606
           + D   YTVT  N  G+DQV + V V D
Sbjct: 103 KEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 17/78 (21%), Positives = 31/78 (39%)

Query: 623 DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 682
                  +  ++   S   +  +      + RV ++     +  T+   ++ D   YTVT
Sbjct: 53  APARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVT 112

Query: 683 ATNSQGKDQVFIEVVVTD 700
             N  G+DQV + V V D
Sbjct: 113 VKNPVGEDQVNLTVKVID 130

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 163 HKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
                  C +    +V+     +   V  A++ D G YTVT +N  G+D V + V V+D
Sbjct: 72  VFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 1e-10
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI----EKYVVDKMDEATGRWTPAGET 276
           + PS PG  L  + V +    L W  P +  G+         +V+  +   G        
Sbjct: 1   EVPSEPG-RLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD 59

Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
                 L +E L  +  Y++ V+A N  G         ++  +
Sbjct: 60  NPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQ 102

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 5e-09
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 4/94 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIV----GYIIEKKEKYSPIWEKCAQTEGD 380
           P +PG        +   +L+W  P +  G          ++    +     +K       
Sbjct: 3   PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPK 62

Query: 381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
                + +L E   Y + V A N  G G   +  
Sbjct: 63  NRMLLIENLRESQPYRYTVKARNGAGWGPEREAI 96

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLE------GYLVEKYDPETGVWIPVGKTRE 109
              G L  + +      L W +P +  GE             +         + V   + 
Sbjct: 4   SEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKN 63

Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSI 145
             + +  L     Y++ VKA N  G     E   ++
Sbjct: 64  RMLLIENLRESQPYRYTVKARNGAGWGPEREAIINL 99

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 13/105 (12%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND-------------ITIISKDR 472
           P +     ++     G + EF   V  +  P  +W+ +                 + K  
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 473 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
                D +   L + +    D+G YT    NS G    +A +TVL
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 10/51 (19%), Positives = 16/51 (31%)

Query: 554 IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
           ++                + IR +   D  +YT  A NS G       + V
Sbjct: 58  LKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 12/44 (27%), Positives = 14/44 (31%)

Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
                     L +R     DAG YT  A N  G       + VL
Sbjct: 66  VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/49 (20%), Positives = 15/49 (30%)

Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
           +               + IR +   D  +YT  A NS G       + V
Sbjct: 60  VLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 2/87 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P KP        +   +   W    +        + ++ +       +  A+ +  T   
Sbjct: 4   PEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTSCT 61

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPS 411
                +     E  V A N  G     
Sbjct: 62  VDYSTVYFVNIEVWVEAENALGKVTSD 88

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 4/91 (4%)

Query: 225 PPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           PP  P  L       + +  +W     +       + +              + + P + 
Sbjct: 3   PPEKPKNLSCIVNEGKKMRCEW-DGGRETHLET-NFTLKSEWATHKFADCKAKRDTPTSC 60

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
                 +     +  V A N  GK       
Sbjct: 61  TVDYSTVYFVNIEVWVEAENALGKVTSDHIN 91

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 17/100 (17%), Positives = 24/100 (24%), Gaps = 9/100 (9%)

Query: 54  GLDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-IPVGKTREP 110
           GL PE P  L            +W     +        L  ++             T   
Sbjct: 1   GLPPEKPKNLSCIVNEGKKMRCEW-DGGRETHLETNFTLKSEWATHKFADCKAKRDTPTS 59

Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
                        +  V+A N  G+       S  I  DP
Sbjct: 60  CTVDYSTVYFVNIEVWVEAENALGKVT-----SDHINFDP 94

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
           P I   ++    V  GS+  F + V+G+P P  EW  N + I   DR      + +    
Sbjct: 5   PKIFE-RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 486 VF-DSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
           V  D    DS    +   N  G     A + V
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 20/85 (23%), Positives = 33/85 (38%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           +    +V  G +  F   VI    P   W  +D  +    ++    +     L +   K 
Sbjct: 7   KPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKG 66

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            D G YT+  KNS+GT +    + V
Sbjct: 67  DDKGEYTVRAKNSYGTKEEIVFLNV 91

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSP 225
             ++   +  L +   +  D G YTV A+N  G     V + V     P
Sbjct: 49  MKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 553 WIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 608
                  +           +TI  ++  D  +YTV A NS G  +  + + VT   
Sbjct: 40  RELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
               +           +TI  ++  D  +YTV A NS G  +  + + VT   
Sbjct: 43  KQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 2e-10
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKC--AQTEGDTP 382
           P K  T   K+     + + W PP +  G  I GYII      +            G+  
Sbjct: 14  PPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRL 72

Query: 383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 421
             ++ +L     Y F++ A N  G G  S+       +A
Sbjct: 73  THQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA 111

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 221 DKPSPPGGPLKV--SNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPA--GET 276
             P+ P   + V       + + ++W+ P +  G  I  Y++    +             
Sbjct: 9   LVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPV 67

Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
            G     +++ L  +  Y F+++A N +G    
Sbjct: 68  VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPM 100

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 8e-07
 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 3/86 (3%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW---IPVGKTREPEMDVTGL 117
           +           + W  P +  G+     +    D    +    I           +  L
Sbjct: 20  VVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQEL 79

Query: 118 TPGHEYKFRVKALNKEGESEPLETFS 143
           T    Y F+++A N +G     E   
Sbjct: 80  TLDTPYYFKIQARNSKGMGPMSEAVQ 105

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           P+ P   L  +      +TL W    D+ G  +  Y V          T         T 
Sbjct: 4   PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDVYNGTALATTVT--------GTT 52

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
             + GL  +  Y F V+A +  G     +   S+
Sbjct: 53  ATISGLAADTSYTFTVKAKDAAGNVSAASNAVSV 86

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 48.6 bits (115), Expect = 5e-08
 Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 11/90 (12%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P         T  + L+WT    N G  + GY +               T       
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDV--------YNGTALATTVTGTTA 53

Query: 385 KVLDLIEGNQYEFRVLAVNK-GGPGEPSDP 413
            +  L     Y F V A +  G     S+ 
Sbjct: 54  TISGLAADTSYTFTVKAKDAAGNVSAASNA 83

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 9/89 (10%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
                L  +       TL W    D+ G       V  YD   G  +           ++
Sbjct: 5   TAPTNLASTAQTTSSITLSWTASTDNVG-------VTGYDVYNGTAL-ATTVTGTTATIS 56

Query: 116 GLTPGHEYKFRVKALNKEG-ESEPLETFS 143
           GL     Y F VKA +  G  S      S
Sbjct: 57  GLAADTSYTFTVKAKDAAGNVSAASNAVS 85

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 3e-10
 Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 8/99 (8%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT---GRWTPAGETE 277
           + PSPP    +    H     L W             Y V  +          +   +T 
Sbjct: 3   ELPSPPSVWFEAEFFH---HILHWTPIPQQSESTC--YEVALLRYGIESWNSISQCSQTL 57

Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
                     L  ++ Y+ RVRAV+    S+   T    
Sbjct: 58  SYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRF 96

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 23/93 (24%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 328 PGTPEIKDFDTDF-VELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK---CAQTEGDTPK 383
           P  P +      F   L WTP  Q   S    Y +         W     C+QT      
Sbjct: 5   PSPPSVWFEAEFFHHILHWTPIPQQSESTC--YEVALLRYGIESWNSISQCSQTLSYDLT 62

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
              LDL   N Y  RV AV+     + +     
Sbjct: 63  AVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTR 95

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 8e-09
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 10/90 (11%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-----REPE 111
           P    E    H     L W             Y V         W  + +       +  
Sbjct: 8   PSVWFEAEFFH---HILHWTPIPQQSEST--CYEVALLRYGIESWNSISQCSQTLSYDLT 62

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLET 141
                L   + Y+ RV+A++    S+   T
Sbjct: 63  AVTLDLYHSNGYRARVRAVDGSRHSQWTVT 92

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 19/85 (22%), Positives = 38/85 (44%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           +   + V  G +  F  +  GEP+PT  WL     + +  R ++      +  ++   + 
Sbjct: 5   KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA 64

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            D G Y++ V+NS G  +    +T+
Sbjct: 65  SDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIV 219
            Q +D G Y+V  EN  GK   E  + +
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.0 bits (131), Expect = 3e-10
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 217 VIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET 276
           + V+D P+     + V +V      ++W  P           ++                
Sbjct: 1   IPVIDGPTQ----ILVRDVSDTVAFVEWTPPRAKVDF----ILLKYGLVGGEGGKTTFRL 52

Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE 317
           + P++   V+ L P  +Y+  + AV    +S+  +T  + E
Sbjct: 53  QPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTE 93

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.9 bits (118), Expect = 3e-08
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 6/89 (6%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEM 112
           +D    + V ++      ++W  P+          L++             +      + 
Sbjct: 4   IDGPTQILVRDVSDTVAFVEWTPPRAKVD----FILLKYGLVGGEGGKTTFRLQPPLSQY 59

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLET 141
            V  L PG  Y+  + A+    ES+   T
Sbjct: 60  SVQALRPGSRYEVSISAVRGTNESDASST 88

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 4/91 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
              P    ++D       + WTPP           +++         +   + +    + 
Sbjct: 4   IDGPTQILVRDVSDTVAFVEWTPPRAKVD----FILLKYGLVGGEGGKTTFRLQPPLSQY 59

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            V  L  G++YE  + AV      + S    
Sbjct: 60  SVQALRPGSRYEVSISAVRGTNESDASSTQF 90

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 483
           + P I       IK++AG     +++ IG P PT  W   D          +     +T 
Sbjct: 1   LKPKILT-ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59

Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
           +    +KR DSG Y L VKN  G D+   +V V
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 5e-10
 Identities = 14/97 (14%), Positives = 23/97 (23%), Gaps = 4/97 (4%)

Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
           +P  PG   +    +D + L W+ P                                  +
Sbjct: 1   KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 60

Query: 384 G----KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
                    L  G  Y  RV A  +      S+ +  
Sbjct: 61  PSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPS 97

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 4e-09
 Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 5/100 (5%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDK----MDEATGRWTPAGETE 277
           KP  PG  L V    ++ + L W  P                    ++            
Sbjct: 1   KPRAPGN-LTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYL 59

Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE 317
            P   +    L     Y+ RVRA  +   +     + S +
Sbjct: 60  EPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTK 99

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 9e-07
 Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 6/96 (6%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEK------YDPETGVWIPVGKTRE 109
              G L V     D   L W+ P                        +  ++        
Sbjct: 3   RAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPS 62

Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSI 145
             +  + L  G  Y+ RV+A  +   +   E   S 
Sbjct: 63  LRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPST 98

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (131), Expect = 5e-10
 Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 7/93 (7%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKY------VVDKMDEATGRWTPAGET 276
           P+ P     + ++    +   W+ P  +   P            D   +         + 
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWE-PGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63

Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
                 +  + L+        V+A N  G SE 
Sbjct: 64  RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSES 96

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 7e-09
 Identities = 12/90 (13%), Positives = 21/90 (23%), Gaps = 9/90 (10%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP------ 110
           P     + ++  +    +W  P  +   P    L          +               
Sbjct: 8   PSNLSCLMHLTTNSLVCQWE-PGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQN 66

Query: 111 --EMDVTGLTPGHEYKFRVKALNKEGESEP 138
              +    L         V+A N  G SE 
Sbjct: 67  NCSIPRKNLLLYQYMAIWVQAENMLGSSES 96

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 8/94 (8%)

Query: 325 PGKPGTPE-IKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
           P  P     +    T+ +   W P       P    +   + +    ++     +    K
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWEPG-PETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63

Query: 384 G------KVLDLIEGNQYEFRVLAVNKGGPGEPS 411
                     +L+        V A N  G  E  
Sbjct: 64  RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESP 97

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.0 bits (131), Expect = 5e-10
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 8/102 (7%)

Query: 222 KPSPPGGP---LKVSNVHAEGVTLDWKVP---DDDGGQPIEKYVVDKMDEATGRWTPAGE 275
           +P PP      +K        + + W  P   D   G    +Y +               
Sbjct: 2   EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKP--EEAEEWEIH 59

Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE 317
             G  T  +V  L P  KY  + R     G     +  +S+E
Sbjct: 60  FTGHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVE 101

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.3 bits (124), Expect = 5e-09
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPK---DDGGEPLEGYLVEKYDPETGVWIPVGKTREPEM 112
           +    ++     K    +KW+ P       G     Y +     E   W       + + 
Sbjct: 8   NLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTGHQTQF 67

Query: 113 DVTGLTPGHEYKFRVKALNKEGE-SEPLETFS 143
            V  L PG +Y  + +     G  S   +  S
Sbjct: 68  KVFDLYPGQKYLVQTRCKPDHGYWSRWSQESS 99

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.5 bits (122), Expect = 8e-09
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 324 QPGKPGTPEIK----DFDTDFVELAWTPPE---QNGGSPIVGYIIEKKEKYSPIWEKCAQ 376
           +P  P    ++         ++ + W+PP       G   + Y I  K + +   E    
Sbjct: 2   EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEA--EEWEIH 59

Query: 377 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP-GEPSDPTAPHI 418
             G   + KV DL  G +Y  +       G     S  ++  +
Sbjct: 60  FTGHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVEM 102

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 6e-10
 Identities = 16/97 (16%), Positives = 36/97 (37%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
               G    + F+ + V L W  P++  G  ++  +  ++     +     +      +G
Sbjct: 5   DDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERG 64

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 421
             L  +    Y  R+ A +  G G  ++PT  ++   
Sbjct: 65  CRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDY 101

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 14/89 (15%), Positives = 23/89 (25%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
            K     GP+         V L W+ P +  G  +   V  +                 +
Sbjct: 2   AKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFAL 61

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
                   +    Y  R+RA +  G    
Sbjct: 62  ERGCRLRGLSPGNYSVRIRATSLAGNGSW 90

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 2/93 (2%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP--EMD 113
           D  GP+       +   L W +PK+  G  +   +  +   +  + +   +         
Sbjct: 6   DIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGC 65

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSII 146
                    Y  R++A +  G     E     +
Sbjct: 66  RLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYV 98

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (128), Expect = 9e-10
 Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 5/89 (5%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
                + ++   +   +EL W           + Y +    +     +         P+ 
Sbjct: 3   SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMV-----LEPRV 57

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
            +  L     Y  RV  +   GPG  S  
Sbjct: 58  LLTKLQPDTTYIVRVRTLTPLGPGPFSPD 86

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 6/88 (6%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
           +       LK+       + L W             Y +  +++         E      
Sbjct: 2   ESLSGL-SLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPR---- 56

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
            + +  L P+  Y  RVR +   G    
Sbjct: 57  -VLLTKLQPDTTYIVRVRTLTPLGPGPF 83

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 3/83 (3%)

Query: 61  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
           L++         L W   +         Y +   + +           EP + +T L P 
Sbjct: 9   LKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQM---VLEPRVLLTKLQPD 65

Query: 121 HEYKFRVKALNKEGESEPLETFS 143
             Y  RV+ L   G         
Sbjct: 66  TTYIVRVRTLTPLGPGPFSPDHE 88

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 5/88 (5%)

Query: 326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGK 385
           G P  P  K   +  +   W PP        V Y             +    +   P  +
Sbjct: 3   GAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYW-----IQGDSESEAHLLDSKVPSVE 57

Query: 386 VLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
           + +L     YE +V A    G G  S  
Sbjct: 58  LTNLYPYCDYEMKVCAYGAQGEGPYSSL 85

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 6/86 (6%)

Query: 224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
             P  P       +  +  +W  P         KY +    E+      +         +
Sbjct: 3   GAPQNP-NAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSKVPS-----V 56

Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEP 309
           E+  L P   Y+ +V A   QG+   
Sbjct: 57  ELTNLYPYCDYEMKVCAYGAQGEGPY 82

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 3/89 (3%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           L                   W  P          Y ++         +         +++
Sbjct: 2   LGAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSKVP---SVEL 58

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLETFS 143
           T L P  +Y+ +V A   +GE       S
Sbjct: 59  TNLYPYCDYEMKVCAYGAQGEGPYSSLVS 87

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 422 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 481
           ++ +P I     +D     G     +    G P+P  +W   D +  SK           
Sbjct: 1   RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WLSSE 54

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
             L + +    D G Y    +N  G D    ++ +
Sbjct: 55  PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV----GKTREP 110
           L     L+V ++    C + W   +             +       W        K ++ 
Sbjct: 3   LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE 62

Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSII 146
            + +  LTP  +Y+F+V+    +GE      +S  +
Sbjct: 63  WICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPL 98

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET--EGP 279
           +   P   L+V +V      + W++               +       W  A     +  
Sbjct: 2   RLMAPIS-LQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQK 60

Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
              + +E L P+ +Y+F+VR    QG+   
Sbjct: 61  QEWICLETLTPDTQYEFQVRVKPLQGEFTT 90

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 3/102 (2%)

Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK--EKYSPIWEKCAQTEGDT 381
           +   P + ++   +T    ++W   + +           +     ++         +   
Sbjct: 2   RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ 61

Query: 382 PKGKVLDLIEGNQYEFRVLAVNK-GGPGEPSDPTAPHIARAK 422
               +  L    QYEF+V      G     S  + P   R K
Sbjct: 62  EWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTK 103

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 1e-09
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P +   P++        ++ W  P  NG   +  Y +E       +        G     
Sbjct: 1   PDQCKPPQVTCRSATCAQVNWEVPLSNGT-DVTEYRLEWGGVEGSMQICY---CGPGLSY 56

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
           ++  L     Y  RV A++  G G  S+ 
Sbjct: 57  EIKGLSPATTYYCRVQALSVVGAGPFSEV 85

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           P     P +V+   A    ++W+VP  +G   + +Y ++                GP   
Sbjct: 1   PDQCKPP-QVTCRSATCAQVNWEVPLSNGT-DVTEYRLEWGGVEGSMQIC---YCGPGLS 55

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEP-----LTTTAS 315
            E++GL P   Y  RV+A++  G           T  S
Sbjct: 56  YEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPS 93

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
           D   P +V+        + W  P  +G   +  Y +E    E  +            ++ 
Sbjct: 2   DQCKPPQVTCRSATCAQVNWEVPLSNGT-DVTEYRLEWGGVEGSMQ-ICYCGPGLSYEIK 59

Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFS 143
           GL+P   Y  RV+AL+  G     E  +
Sbjct: 60  GLSPATTYYCRVQALSVVGAGPFSEVVA 87

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-09
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 2/109 (1%)

Query: 222 KPSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG-RWTPAGETEGP 279
           KP+PP    +  S   +  + L W  P       ++  +  +  +A+     P  +T   
Sbjct: 4   KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAST 63

Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
            +   V+ L P  +Y FR+R + + GK      +         ++P K 
Sbjct: 64  RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKE 112

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 3/106 (2%)

Query: 324 QPGKPGTPEIKDFD--TDFVELAWTPPEQNGGS-PIVGYIIEKKEKYSPIWEKCAQTEGD 380
           +P  P    + + +  +  ++L WT P                K+  +        T   
Sbjct: 4   KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAST 63

Query: 381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
                V DL    +Y FR+  + + G G  SD +        +  P
Sbjct: 64  RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRP 109

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 7e-05
 Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 4/101 (3%)

Query: 57  PEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW---IPVGKTREPEM 112
           P    +  S        L W  P       L+  +  +    +           +     
Sbjct: 8   PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSF 67

Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSK 153
            V  L P  EY FR++ + ++G+    +            +
Sbjct: 68  TVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 108

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 416 PHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK- 474
           PH+       PY  +  + D++V  GS   FD  V G P P   W  +D  +     F+ 
Sbjct: 5   PHVK------PYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI 57

Query: 475 IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
             +++ +  L + +    D   YT    NS G    TA++ V
Sbjct: 58  DYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-09
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P        D + +++       +GGSPI  Y++  +   S  W+   +    +   
Sbjct: 1   PSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYR-ALSSEWKPEIRLPSGSDHV 58

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
            +  L    +YE  V+A N+ G  + +    
Sbjct: 59  MLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 89

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 1e-08
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           PS P             + ++    DD GG PI  Y+V      +  W P          
Sbjct: 1   PSAPKLE-GQMGEDGNSIKVNLIKQDD-GGSPIRHYLVRYRAL-SSEWKPEIRLPSGSDH 57

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEA 318
           + ++ L  N +Y+  V A N+QGKS+         A
Sbjct: 58  VMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAA 93

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 7e-06
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 57  PEGPLEVSNIHKDGCTLKWN-KPKDDGGEPLEGYLVEKYDPETGVWIPVGK-TREPEMDV 114
           P  P     + +DG ++K N   +DDGG P+  YLV      +     +   +    + +
Sbjct: 1   PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVML 60

Query: 115 TGLTPGHEYKFRVKALNKEGESEP 138
             L    EY+  V A N++G+S+ 
Sbjct: 61  KSLDWNAEYEVYVVAENQQGKSKA 84

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 2/90 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P               + L+W  PEQ     I+ Y I   EK    +         T   
Sbjct: 1   PSTVPIMHQVSATMRSITLSWPQPEQPN-GIILDYEIRYYEKEHNEFNSSMAR-SQTNTA 58

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           ++  L  G  Y  +V A    G G+ S   
Sbjct: 59  RIDGLRPGMVYVVQVRARTVAGYGKFSGKM 88

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           PS     +   +     +TL W    +     I  Y +   ++    +  +         
Sbjct: 1   PSTVPI-MHQVSATMRSITLSWP-QPEQPNGIILDYEIRYYEKEHNEFNSSMAR-SQTNT 57

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEP 309
             ++GL P   Y  +VRA    G  + 
Sbjct: 58  ARIDGLRPGMVYVVQVRARTVAGYGKF 84

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           P     +   +      TL W +P+   G  L+  +             + +++     +
Sbjct: 1   PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARI 60

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLETFS 143
            GL PG  Y  +V+A    G  +      
Sbjct: 61  DGLRPGMVYVVQVRARTVAGYGKFSGKMC 89

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 17/105 (16%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK----------- 373
           PG P T  I   + D + L+W PP    G  I+ Y      + + + +            
Sbjct: 8   PGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65

Query: 374 ----CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
                            +D        FR+ A N+ G G  +   
Sbjct: 66  GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIR 110

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 5e-06
 Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 17/103 (16%)

Query: 223 PSPPGGPLKVS-NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE---- 277
            S PG P  V  + + +G+ L W+ P    G  I +Y                +      
Sbjct: 5   SSGPGAPSTVRISKNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRI 63

Query: 278 -----------GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
                                        FR+ A N++G    
Sbjct: 64  YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPA 106

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 9e-06
 Identities = 16/103 (15%), Positives = 26/103 (25%), Gaps = 19/103 (18%)

Query: 57  PEGPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD-- 113
           P  P  V  + + DG  L W  P    G  +  Y          +     +     +   
Sbjct: 8   PGAPSTVRISKNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYCG 66

Query: 114 ---------------VTGLTPGHEYKFRVKALNKEGESEPLET 141
                              T      FR+ A N++G     + 
Sbjct: 67  LKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQI 109

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 4e-09
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 324 QPGKPGTPEIKDFD--TDFVELAWTPPEQ--NGGSPIVGYIIEKKEKYSPIWEKCAQTEG 379
           +P  P     +        +E+ W  P    +  S  + + +  +      W+       
Sbjct: 7   KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHV--ELS 64

Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 419
           +     + D   G +Y  +V A +    G  SD +    A
Sbjct: 65  NGTAHTITDAYAGKEYIIQVAAKDNEI-GTWSDWSVAAHA 103

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 13/102 (12%), Positives = 23/102 (22%), Gaps = 6/102 (5%)

Query: 222 KPSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
           KP PP     +    +   + + W+ P                                 
Sbjct: 7   KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNG 66

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGK-----SEPLTTTASIE 317
           T   +       +Y  +V A + +       S     T   E
Sbjct: 67  TAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTE 108

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 4/94 (4%)

Query: 57  PEGP-LEVSNIHKDGCTLKWNKPK--DDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD 113
           PE         +     + W  P    D       + +         W  V  +      
Sbjct: 11  PENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAHT 70

Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIA 147
           +T    G EY  +V A +        +   +  A
Sbjct: 71  ITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHA 103

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 7e-09
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPP-EQNGGSPIVGYIIEKKEKYSPIWEKC--AQTEGDT 381
              P        +   + L W      N  +PI G+ I  +   S           EGD 
Sbjct: 2   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 61

Query: 382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
               +  L     Y+ ++   N+GG  E S+ 
Sbjct: 62  YWHSISHLQPETSYDIKMQCFNEGGESEFSNV 93

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 225 PPGGP--LKVSNVHAEGVTLDWKVPDDDGGQ-PIEKYVVDKMDEATGRWTPAGETE--GP 279
           P  GP       V+   + L W          PI  + +      +   +   +    G 
Sbjct: 1   PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 60

Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
                +  L P   Y  +++  N+ G+SE 
Sbjct: 61  RYWHSISHLQPETSYDIKMQCFNEGGESEF 90

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGE-PLEGYLV----EKYDPETGVWIPVGKTRE 109
             GP       +++    LKW          P+ G+ +       D ++     + +   
Sbjct: 2   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 61

Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEP 138
               ++ L P   Y  +++  N+ GESE 
Sbjct: 62  YWHSISHLQPETSYDIKMQCFNEGGESEF 90

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.9 bits (120), Expect = 1e-08
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG-DTPK 383
              P   EI+++    V L W+         I GY    +   S      A  EG     
Sbjct: 7   MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARS 66

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
            K+  L     YEF++ + +     E S
Sbjct: 67  FKIAPLETATMYEFKLQSFSAASASEFS 94

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.7 bits (117), Expect = 2e-08
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP-VT 281
           P P    L++       V L W +  D     I  Y       ++         EG    
Sbjct: 6   PMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHAR 65

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
             ++  L     Y+F++++ +    SE 
Sbjct: 66  SFKIAPLETATMYEFKLQSFSAASASEF 93

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 6/90 (6%)

Query: 55  LDPEGP---LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TR 108
           LDP      LE+    +    L W+   D     + GY        +             
Sbjct: 4   LDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAH 63

Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
                +  L     Y+F++++ +    SE 
Sbjct: 64  ARSFKIAPLETATMYEFKLQSFSAASASEF 93

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 12/95 (12%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
           S P     ++   ++  +   +  +      I KY++    + +          G +   
Sbjct: 1   SGPVEVF-ITETPSQPNSHPIQW-NAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58

Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEA 318
            ++GL P   Y+ ++ ++ + G  E      +  +
Sbjct: 59  TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTS 93

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 2e-08
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 328 PGTPEIKDFDT--DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGK 385
           P    I +  +  +   + W  P+ +    I  YI+  + K S    K A   G      
Sbjct: 3   PVEVFITETPSQPNSHPIQWNAPQPS---HISKYILRWRPKNSVGRWKEATIPGHLNSYT 59

Query: 386 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
           +  L  G  YE +++++ + G  E +    
Sbjct: 60  IKGLKPGVVYEGQLISIQQYGHQEVTRFDF 89

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 63  VSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT--GLTPG 120
            +    +   ++WN P+      +  Y++      +                T  GL PG
Sbjct: 10  ETPSQPNSHPIQWNAPQPS---HISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPG 66

Query: 121 HEYKFRVKALNKEGESEPLET 141
             Y+ ++ ++ + G  E    
Sbjct: 67  VVYEGQLISIQQYGHQEVTRF 87

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 2/92 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGD--TP 382
             KP  P +       +EL W   ++          +    +                  
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYAT 75

Query: 383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
           +  V  L     Y+FR+   +  G  E S   
Sbjct: 76  RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVV 107

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 5e-08
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 55  LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEG----YLVEKYDPETGVWIPVGKTREP 110
           L    P  V  +      L W+  + +  +  +     + +E+ DP+   +  +      
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYAT 75

Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
              V GL P   YKFR+K  +  GE E     S    R+ 
Sbjct: 76  RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 9e-08
 Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 6/121 (4%)

Query: 211 DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW 270
            S  +E   +   S P  P  V  V    + L W +   +  Q  ++  +    E     
Sbjct: 4   GSSGMEPHKVVPLSKPHPP-VVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPK 62

Query: 271 TPAGETEGPVTGLEV--EGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
             +              EGL P   YKFR++  +  G+ E    +  +            
Sbjct: 63  MHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEY---SPVVSVATTRESGPSS 119

Query: 329 G 329
           G
Sbjct: 120 G 120

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 19/129 (14%), Positives = 29/129 (22%), Gaps = 18/129 (13%)

Query: 19  LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKP 78
                   D   L+W          L G+++       P   +   +      +  W   
Sbjct: 8   FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKE--APYQNVTEFDGQDACGSNSWTVV 65

Query: 79  KDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
             D                            P   + GL P  +Y   VK L    +   
Sbjct: 66  DIDPPLR---------------SNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERR 110

Query: 139 LE-TFSSII 146
                S II
Sbjct: 111 TYGAKSDII 119

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 10/109 (9%), Positives = 23/109 (21%), Gaps = 23/109 (21%)

Query: 230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWT------------------ 271
                   + + L W+       + +  +++   +      T                  
Sbjct: 8   FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDI 67

Query: 272 -----PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
                          G  + GL P  +Y   V+ +             S
Sbjct: 68  DPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKS 116

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 28/103 (27%)

Query: 339 DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ---------------------- 376
           D + L W P        ++G+++  KE       +                         
Sbjct: 16  DKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSND 75

Query: 377 -TEGDTPKGKVLDLIEGNQYEFRVLAVNKGG-----PGEPSDP 413
               + P   +  L    QY   V  +          G  SD 
Sbjct: 76  PKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDI 118

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.3 bits (114), Expect = 7e-08
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
            ++D +   GS+  +     G+P P   WL +   + S++R ++   +    L+      
Sbjct: 7   VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE----LRFSKLVL 62

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            DSG+Y    +N  GT   +A++TV
Sbjct: 63  EDSGMYQCVAENKHGTVYASAELTV 87

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 7e-08
 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 8/102 (7%)

Query: 222 KPSPPGGP---LKVSNVHAEGVTLDWKVP---DDDGGQPIEKYVVDKMDEATGRWTPAGE 275
           +P PP      +K        + + W  P   D   G     Y +    E    W     
Sbjct: 2   QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEI--H 59

Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE 317
             G  T  ++  L P  KY  +VR     G     +    I+
Sbjct: 60  FAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQ 101

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 10/103 (9%)

Query: 324 QPGKPGTPEIK----DFDTDFVELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEKCAQ 376
           QP  P    ++    +    ++ + W+PP   +   G   + Y I  K + +  WE    
Sbjct: 2   QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIH-- 59

Query: 377 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP-GEPSDPTAPHI 418
             G   + K+L L  G +Y  +V      G     S  T   I
Sbjct: 60  FAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQI 102

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPK---DDGGEPLEGYLVEKYDPETGVWIPVGKTREPEM 112
           +    ++     K    +KW+ P       G     Y +     +   W      ++ E 
Sbjct: 8   ELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEF 67

Query: 113 DVTGLTPGHEYKFRVKALNKEG 134
            +  L PG +Y  +V+     G
Sbjct: 68  KILSLHPGQKYLVQVRCKPDHG 89

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 48.8 bits (115), Expect = 9e-08
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPP--EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTP 382
              P     +  + + + ++WTP    ++       Y+  K++  +  WE     +    
Sbjct: 5   FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQN 64

Query: 383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
              + D     +Y  +V+A+N  G    +   
Sbjct: 65  NIVIADQPTFVKYLIKVVAINDRGESNVAAEE 96

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWK--VPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
           D P      +         + + W      +        YV  K D     W      + 
Sbjct: 2   DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDW 61

Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
               + +       KY  +V A+N +G+S  
Sbjct: 62  RQNNIVIADQPTFVKYLIKVVAINDRGESNV 92

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 37.2 bits (85), Expect = 8e-04
 Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 7/89 (7%)

Query: 57  PEGP---LEVSNIHKDGCTLKWNKP-KDDGGEPLEGYLVEKYDPETGVW---IPVGKTRE 109
           P      +       +   + W    + +   P   Y V               +   R+
Sbjct: 4   PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQ 63

Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEP 138
             + +       +Y  +V A+N  GES  
Sbjct: 64  NNIVIADQPTFVKYLIKVVAINDRGESNV 92

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 7/109 (6%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
           P  P   L+  N+      L WK P +       +               +         
Sbjct: 1   PDGPTQ-LRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGAPPLQAETPGSAVDY----- 54

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP 331
             +  L+ +  Y   VR +     + P + T +   + P +   K  TP
Sbjct: 55  -PLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTP 102

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 12/108 (11%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P      +    F  L W PP+    +  +                 A+T G     
Sbjct: 1   PDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQV------TAPGAPPLQAETPGSAVDY 54

Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 426
            + DL+    Y   V  +       P+         AP    AK+V+P
Sbjct: 55  PLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTP 102

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 6/87 (6%)

Query: 57  PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
           P+GP  L   N+ +    L W  P++               P              +  +
Sbjct: 1   PDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGAPP----LQAETPGSAVDYPL 56

Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET 141
             L     Y   V+ L     + P   
Sbjct: 57  HDLVLHTNYTATVRGLRGPNLTSPASI 83

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
           + +PP   L+V+    +  +L W+            + +    +         ET     
Sbjct: 5   QMAPPS--LQVTKD-GDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAH 61

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPL 310
            + +  L P+ +Y  RVR    +     +
Sbjct: 62  SMALPALEPSTRYWARVRVRTSRTGYNGI 90

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTP 382
           N    P + ++   D D   L W   +         + I+ ++  +   +   +T  +  
Sbjct: 3   NIQMAPPSLQVT-KDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAH 61

Query: 383 KGKVLDLIEGNQYEFRVLAVNKGGP--GEPSDPTAP 416
              +  L    +Y  RV          G  S+ +  
Sbjct: 62  SMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEA 97

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 10/74 (13%), Positives = 18/74 (24%), Gaps = 2/74 (2%)

Query: 68  KDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV--GKTREPEMDVTGLTPGHEYKF 125
            D  +L+W   K         + ++                     M +  L P   Y  
Sbjct: 17  GDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWA 76

Query: 126 RVKALNKEGESEPL 139
           RV+          +
Sbjct: 77  RVRVRTSRTGYNGI 90

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 212 SVEVEVIVLDKPSPPGGPLKVS-NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW 270
           S E     LD+   P  P  +        + + W  P ++    +  Y +     +    
Sbjct: 7   SAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWT-PPENQNIVVRGYAIGYGIGSPHAQ 65

Query: 271 TPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
           T   + +       +E L P+  Y   ++A N  G+  PL  +A 
Sbjct: 66  TI--KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAV 108

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 6e-06
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 8/111 (7%)

Query: 307 SEPLTTTASIEAKNPFNQPGKPGTPEIKDFD--TDFVELAWTPPEQNGGSPIVGYIIEKK 364
           ++ L+       ++  ++   P  P           + ++WTPPE      + GY I   
Sbjct: 3   TDWLSAET---FESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQN-IVVRGYAIGYG 58

Query: 365 EKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
                                + +L   + Y   + A N  G G P   +A
Sbjct: 59  IGSPHAQTIKVDY--KQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESA 107

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 26/85 (30%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
           PE P  +         +    P ++    + GY +                ++    +  
Sbjct: 21  PEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIEN 80

Query: 117 LTPGHEYKFRVKALNKEGESEPLET 141
           L P   Y   +KA N  GE  PL  
Sbjct: 81  LDPSSHYVITLKAFNNVGEGIPLYE 105

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-07
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPE-QNGGSPIVGYIIEKKEKYSPI 370
           ++ ++        P +P    + +     V L W   +     S + GY +     Y   
Sbjct: 5   SSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVF----YRTS 60

Query: 371 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
            +   Q          L L     Y   V A   GG G  S+ 
Sbjct: 61  SQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQ 103

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 4e-07
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 341 VELAWTPPEQ---NGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
           +++ W  P       G  ++ Y ++ KE      +        T    V  L    +YE 
Sbjct: 23  IQVRWEAPRNADIQKGWMVLEYELQYKEVNE--TKWKMMDPILTTSVPVYSLKVDKEYEV 80

Query: 398 RVLAVNKGG--PGEPSDPT 414
           RV +  +     GE S+  
Sbjct: 81  RVRSKQRNSGNYGEFSEVL 99

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 53  RGLDPEGPLEVSNIHKDGCTLKWNKPKD---DGGEPLEGYLVEKYDPETGVWIPVGKTRE 109
             L+                ++W  P++     G  +  Y ++  +     W  +     
Sbjct: 5   IALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILT 64

Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGES 136
             + V  L    EY+ RV++  +   +
Sbjct: 65  TSVPVYSLKVDKEYEVRVRSKQRNSGN 91

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 223 PSPPGG-PLKVSNVHAEG----VTLDWKVP---DDDGGQPIEKYVVDKMDEATGRWTPAG 274
           P PP      + NV   G    + + W+ P   D   G  + +Y +   +          
Sbjct: 1   PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKE--VNETKWKM 58

Query: 275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK-----SEPLTTT 313
                 T + V  L  + +Y+ RVR+  +        SE L  T
Sbjct: 59  MDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVT 102

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 3/83 (3%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
                L +  + +    L WN    +       +LV+        W         +  + 
Sbjct: 4   WAPENLTLHKLSESQLELNWNNRFLNHCL---EHLVQYRTDWDHSWTEQSVDYRHKFSLP 60

Query: 116 GLTPGHEYKFRVKALNKEGESEP 138
            +     Y FRV++         
Sbjct: 61  SVDGQKRYTFRVRSRFNPLCGSA 83

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
            P  P    +       +EL W     N     + ++++ +  +   W + +       K
Sbjct: 2   IPWAPENLTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTEQSVD--YRHK 56

Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
             +  +    +Y FRV +      G   
Sbjct: 57  FSLPSVDGQKRYTFRVRSRFNPLCGSAQ 84

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 8e-06
 Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 6/88 (6%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
            P  P   L +  +    + L+W            +++V    +    WT          
Sbjct: 2   IPWAPEN-LTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSVD--YRH 55

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
              +  +    +Y FRVR+         
Sbjct: 56  KFSLPSVDGQKRYTFRVRSRFNPLCGSA 83

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 5e-07
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV--VDKMDEATGRWTPAGETEGPV 280
             PP G ++ S +  + + + W        Q I        +        T         
Sbjct: 2   MMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 60

Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
               V GL PN  Y+F V     +  S  
Sbjct: 61  LSYLVTGLKPNTLYEFSVMVTKGRRSSTW 89

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 15/92 (16%), Positives = 20/92 (21%), Gaps = 4/92 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSP---IVGYIIEKKEKYSPIWEKCAQTEGDT 381
              P   +      D + + W                Y +  K    P   K       T
Sbjct: 2   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWK-TNIPANTKYKNANATT 60

Query: 382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
               V  L     YEF V+          S  
Sbjct: 61  LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT 92

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 16/90 (17%), Positives = 22/90 (24%), Gaps = 4/90 (4%)

Query: 56  DPEGPLEVSNIHKDGCTLKWNKPKDDGGEP---LEGYLVEKYDPETGVWIPV-GKTREPE 111
            P   ++ S +  D   + W        +       Y V                     
Sbjct: 3   MPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLS 62

Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLET 141
             VTGL P   Y+F V        S    T
Sbjct: 63  YLVTGLKPNTLYEFSVMVTKGRRSSTWSMT 92

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 8e-07
 Identities = 17/88 (19%), Positives = 24/88 (27%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
               P G +      +  V L W  P +       +Y VD             E     T
Sbjct: 4   LLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRT 63

Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
              +  L    +Y F VRA   +     
Sbjct: 64  ECVLSNLRGRTRYTFAVRARMAEPSFGG 91

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 4/98 (4%)

Query: 57  PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDV 114
           P G +           L+W  P +        Y V+         +   +      E  +
Sbjct: 8   PVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVL 67

Query: 115 TGLTPGHEYKFRVKALNKEGESEPL--ETFSSIIARDP 150
           + L     Y F V+A   E             +    P
Sbjct: 68  SNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLLTP 105

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 9e-07
 Identities = 17/111 (15%), Positives = 28/111 (25%), Gaps = 8/111 (7%)

Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKM------DEATGRWTPAGE 275
           +P  P       +   +   L W V               +        + +        
Sbjct: 5   QPPEPRDL--QISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILL 62

Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG 326
           +      L  E L+P+  Y  RVR     G       +         +QPG
Sbjct: 63  SNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPG 113

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 10/108 (9%)

Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKE------KYSPIWEKCAQT 377
           QP +P   +I   D D   L W+    +  S  +     + E      + S        +
Sbjct: 5   QPPEPRDLQI-STDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLS 63

Query: 378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGG---PGEPSDPTAPHIARAK 422
                      L+  + Y  RV      G    G PS  +      ++
Sbjct: 64  NTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQ 111

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 12/106 (11%)

Query: 57  PEGPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG--------VWIPVGKT 107
           P  P ++  +  +D   L W+                +++              I +  T
Sbjct: 6   PPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNT 65

Query: 108 REPEMDVTGLTPGHEYKFRVKALNKEGE---SEPLETFSSIIARDP 150
            +  +    L P   Y  RV+     G      P +    +     
Sbjct: 66  SQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQ 111

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFDSKR 491
             + V  G   + + +V G   P  +W+ +   + + D+  I   ++     L +   +R
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63

Query: 492 GDSGIYTLAVKNSWGTDKG-TAKVTVLG 518
            D+G Y   V++   T+      +TV G
Sbjct: 64  SDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSP----IWEKCAQTEGDTPKGKVLDLIEGNQYE 396
           V++ WT   Q     I GY +  ++         W+             +++L +G  YE
Sbjct: 32  VQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89

Query: 397 FRVLAVNKGGPGEPSDP 413
            +V        G  S+ 
Sbjct: 90  IKVRPYFNEFQGMDSES 106

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 14/105 (13%), Positives = 25/105 (23%), Gaps = 6/105 (5%)

Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKM----D 264
           G        +  +             +    V + W V        I+ Y V        
Sbjct: 1   GSSGSSGRQVQKELGDVLVRLHNPVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGL 58

Query: 265 EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
           +AT  W              +  L     Y+ +VR    + +   
Sbjct: 59  QATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMD 103

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 49  VEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKY----DPETGVW--I 102
           V+K+ G           +      + W   +      ++GY V          T  W  +
Sbjct: 10  VQKELGDVLVRLHNPVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNL 67

Query: 103 PVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
                 E    +  L  G  Y+ +V+    E +    E+
Sbjct: 68  DAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSES 106

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-06
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE---TE 277
           D PS P   +     ++    + +  P+  GG PI KY  +        W          
Sbjct: 1   DTPSSPS--IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 58

Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
                + + GL P   Y  R+ A+N +G  E    +
Sbjct: 59  SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 94

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 6e-06
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
           P  P   ++ +  +   ++ +  PE  GG PI+ Y  E +     +W        +    
Sbjct: 3   PSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 61

Query: 385 KVL---DLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            ++    L     Y  R+ A+N  G GE S  +
Sbjct: 62  GIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 94

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK-----IVNDDKSTKLKVFDSKRGDS 494
           +  ++     V G P P  +W  N   +              + +    L++ +    ++
Sbjct: 15  SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74

Query: 495 GIYTLAVKNSWGTDKGTAKVTVLG 518
           G YTL  KN +G D+       +G
Sbjct: 75  GDYTLIAKNEYGKDEKQISAHFMG 98

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 12/62 (19%), Positives = 22/62 (35%)

Query: 548 KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 607
            +L +      K    ++ +Y   + +      +   YT+ A N  GKD+  I       
Sbjct: 40  AILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

Query: 608 PS 609
           P 
Sbjct: 100 PG 101

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 12/60 (20%), Positives = 21/60 (35%)

Query: 644 LESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
           L     +  K    ++ +Y   + +      +   YT+ A N  GKD+  I       P 
Sbjct: 42  LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
            +    H +Y+  L +      + G YT+ A+N  GKD  ++    +  P 
Sbjct: 51  KIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPI---PTKEWLCNDITIIS---------KDRFKIVNDD 479
           +     V+ G +  F   V  E +   PT +W       ++         K+ F+  +  
Sbjct: 6   KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 65

Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            + ++++  +K   +G Y   V      D  +  + V
Sbjct: 66  YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 102

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 2/89 (2%)

Query: 523 WNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDT 582
               ED    P   +   K      K          +     +  Y  ++ I   + +  
Sbjct: 23  KVKAEDLLRKPTIKWFKGKWMDLASKAGKHL--QLKETFERHSRVYTFEMQIIKAKDNFA 80

Query: 583 AQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
             Y    T     D    ++ V +     
Sbjct: 81  GNYRCEVTYKDKFDSCSFDLEVHESTGTT 109

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 8/63 (12%), Positives = 19/63 (30%)

Query: 643 SLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
           S   ++L   +     +  Y  ++ I   + +    Y    T     D    ++ V +  
Sbjct: 47  SKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 106

Query: 703 SAP 705
              
Sbjct: 107 GTT 109

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 2/97 (2%)

Query: 132 KEGESEPLE--TFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGV 189
           K GE         +  + R P  K+     +D   ++ +        +     Y  ++ +
Sbjct: 13  KVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQI 72

Query: 190 RMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
             A+   AG Y       +  DS   ++ V +     
Sbjct: 73  IKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 2/69 (2%)

Query: 640 MPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
             ++  S           +       + +      +   YT+ A N  G+    I     
Sbjct: 39  SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98

Query: 700 DKPS--APE 706
           D P    PE
Sbjct: 99  DNPFEFNPE 107

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 11/92 (11%), Positives = 24/92 (26%)

Query: 132 KEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRM 191
                         +   P      + +      ++      +         +  L +  
Sbjct: 10  HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 69

Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
               + G YT+ A N  G+ S  +    +D P
Sbjct: 70  PTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 7e-06
 Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 434 SDIKVRAGSNFEF---DINVIGEPIPTKEWLCNDITIISKDRFKI-------VNDDKSTK 483
           + +++             +V G+P P+  WL N   +                   +   
Sbjct: 5   ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64

Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNP 525
           L++      ++G YTL   N +G    +     +    ++NP
Sbjct: 65  LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 2/62 (3%)

Query: 553 WIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS--A 610
           +I T       +       + +      +   YT+ A N  G+    I     D P    
Sbjct: 46  FIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFN 105

Query: 611 PE 612
           PE
Sbjct: 106 PE 107

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 8e-06
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 12/97 (12%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTK------------EWLCNDITIISKDRFKIVNDD 479
           +  D +V  G +  F   V G  +                       +   D +   +  
Sbjct: 10  RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69

Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
              +L + D++   +G Y   V      D     +TV
Sbjct: 70  YLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 10/61 (16%), Positives = 18/61 (29%)

Query: 640 MPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
              S   Q+L         +  Y  ++ I   Q + T  Y    +     D     + V 
Sbjct: 48  DLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

Query: 700 D 700
           +
Sbjct: 108 E 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 8/70 (11%), Positives = 17/70 (24%)

Query: 537 YMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 596
               K +       +             +  Y  ++ I   Q + T  Y    +     D
Sbjct: 39  VKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFD 98

Query: 597 QVFIEVVVTD 606
                + V +
Sbjct: 99  CSNFNLTVHE 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 2/92 (2%)

Query: 132 KEGESEPLE--TFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGV 189
             G S         + + + P  K+     +D   +  Q              Y  +L +
Sbjct: 17  TVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHI 76

Query: 190 RMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
             AQ A  G Y       +  D     + V +
Sbjct: 77  TDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 8e-06
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSK 490
           QL D     G   E +  V  +    K +   +  I   K R++I  + K   L +  + 
Sbjct: 6   QLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 65

Query: 491 RGDSGIYTLAVKNSWGTDKGTAKVTV 516
           + D+  Y++         + +AK++V
Sbjct: 66  KADAAEYSVMTTG----GQSSAKLSV 87

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 9/99 (9%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-------EWLCNDITIISKDRFKIVND 478
           P + +   S   +  G            P  T        +     +   S+ RF + + 
Sbjct: 3   PRV-KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 479 DKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTV 516
              ++L + +       G Y     +S G+D+    + V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
           P    +       V L W PPE      + GY++E ++             G   +  V 
Sbjct: 10  PPRGLVAVRTPRGVLLHWDPPELVPK-RLDGYVLEGRQGSQGWEVLDPAVAGTETELLVP 68

Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPT 414
            LI+   YEFR++A       +PS+  
Sbjct: 69  GLIKDVLYEFRLVAFAGSFVSDPSNTA 95

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
            SPP G   V+     GV L W  P+      ++ YV++    + G         G  T 
Sbjct: 8   LSPPRGL--VAVRTPRGVLLHWDPPELVPK-RLDGYVLEGRQGSQGWEVLDPAVAGTETE 64

Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
           L V GLI +  Y+FR+ A      S+P  T 
Sbjct: 65  LLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 54  GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD 113
           GL P   L        G  L W+ P+          L  +   +    +           
Sbjct: 7   GLSPPRGLVAVRT-PRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETEL 65

Query: 114 -VTGLTPGHEYKFRVKALNKEGESEPLET 141
            V GL     Y+FR+ A      S+P  T
Sbjct: 66  LVPGLIKDVLYEFRLVAFAGSFVSDPSNT 94

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 489
           ++  +  + + G +     +V+    PT  W      +I K   + +    +    +   
Sbjct: 5   KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-IRGI 63

Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTV 516
           K+ D G Y    +     +     + V
Sbjct: 64  KKTDEGTYRCEGRILARGEINFKDIQV 90

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKL 484
             +  ++     VR G++  F        P  T  W       +          D +  L
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-----DFNGIL 56

Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
            + + +  D+G Y     N +  D+GTA + V
Sbjct: 57  TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
           P + +DQ +++  R  +    +  + G     K     D    +              L 
Sbjct: 3   PVL-KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
               +  D G Y    +   G    +  ++ 
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVAS-SRVISF 91

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 8/92 (8%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK--------STKLK 485
            ++++   +  +      G   P  EW  +         +                T + 
Sbjct: 12  PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGIT 71

Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
                R D+G YT  V    G   G  KV ++
Sbjct: 72  FKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
           Q+ +  V  G +      V G  +    W+  ++   +              L       
Sbjct: 8   QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVT-SD 66

Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
            +    T   +N  G  + + +V V
Sbjct: 67  LNRKNVTCWAENDVGRAEVSVQVNV 91

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 8/93 (8%)

Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK--------STK 483
             SD++V    + +      G   P  EW     +  +   +               S+ 
Sbjct: 7   AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSG 66

Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
           +      R D+G YT  V    G + G   + +
Sbjct: 67  ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 3/95 (3%)

Query: 132 KEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRM 191
           +E E         ++  +P      + +    + S       +    +       L    
Sbjct: 12  EEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIH---VEYYQEGEISEGCLLFNK 68

Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
               + G YT+ A+N  G  +  +    L +P P 
Sbjct: 69  PTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPV 103

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 7/87 (8%)

Query: 446 FDINVIGEPIPT----KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV 501
            +  V G P PT            + I    +    +     L        ++G YTL  
Sbjct: 22  IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81

Query: 502 KNSWGTDKGTAKVTVLGCSLKWNPPED 528
           KN  GT   T     L    +  P ++
Sbjct: 82  KNPLGTANQTINGHFLK---EPFPVDE 105

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 4/95 (4%)

Query: 422 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 481
           +K S    +      +V  G      + +       K         +S  ++   +    
Sbjct: 2   EKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 61

Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
             L +      D   Y   V      +K + ++ V
Sbjct: 62  RTLTISQCSLADDAAYQCVVGG----EKCSTELFV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 8/71 (11%), Positives = 22/71 (30%), Gaps = 1/71 (1%)

Query: 149 DPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNT-KLGVRMAQRADAGFYTVTAENI 207
                +       +   +++       +   +LD  +  L +     +D   Y + + NI
Sbjct: 23  LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82

Query: 208 NGKDSVEVEVI 218
                  + V+
Sbjct: 83  TDTMKFFLYVL 93

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 516 VLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIR 575
           V+  ++ ++ P +     + +   +    +      +   +   RV +D V     +TI 
Sbjct: 8   VVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG--SLTIY 65

Query: 576 PLQRSDTAQYTVTATNSQGKDQVFIEVV 603
            L  SD  +Y + + N     + F+ V+
Sbjct: 66  NLTSSDEDEYEMESPNITDTMKFFLYVL 93

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 13/93 (13%)

Query: 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN----------DDKSTKL 484
            I      N  F +     P+    W      +   +  +             D  S  L
Sbjct: 4   QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
            +++    D   Y +   N   T K    + VL
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDTMK--FFLYVL 93

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 438 VRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST--------KLKVFD 488
           V  G+      +   G P     W  + I++++ D  K      S+         L    
Sbjct: 14  VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 73

Query: 489 SKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
               DSG Y    +N +GT   +    +
Sbjct: 74  VTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 13/90 (14%)

Query: 428 INRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF 487
             RD   +      S         G P+P  + L +    +       V  D        
Sbjct: 6   DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD-------- 57

Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
                  G Y    +++ G       V VL
Sbjct: 58  -----LEGTYLCRARSTQGEVTREVTVNVL 82

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 8e-04
 Identities = 14/66 (21%), Positives = 19/66 (28%)

Query: 452 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511
            E   T  W  +D                  KL    +K  DSG Y   V+NS    +  
Sbjct: 29  NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 88

Query: 512 AKVTVL 517
                +
Sbjct: 89  ISAKFV 94

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.2 bits (85), Expect = 8e-04
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK--STKLKVFDSKR 491
            D+  +AG            P+    +  N   +      +I   ++    +L    +  
Sbjct: 11  KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLP 70

Query: 492 GDSGIYTLAVKNSWGTD-KGTAKVTVL 517
            D G+YT  V N  G   K + K+TV+
Sbjct: 71  EDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 438 VRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKI-------VNDDKSTKLKVFDS 489
              G+      +   G P     W  + I + +  +          V +  + +L     
Sbjct: 14  ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 73

Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTV 516
              D+G Y+   +N +GT   +  V +
Sbjct: 74  SASDTGEYSCEARNGYGTPMTSNAVRM 100

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
           SD  +  G +    +       P+ +        I   +   V+  +            D
Sbjct: 7   SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLE----------LQD 56

Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLG 518
           SG +T  V  +    +    + VL 
Sbjct: 57  SGTWTCTVLQNQKKVEFKIDIVVLA 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	716
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.59
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.58
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.51
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.44
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.4
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.39
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.38
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.38
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.37
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.37
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.37
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.35
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.35
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.34
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.34
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.34
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.33
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.33
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.33
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.33
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.32
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.32
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.32
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.31
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.31
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.31
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.31
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.3
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.3
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.29
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.29
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.28
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.27
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.27
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.25
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.25
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.25
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.24
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.24
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.24
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.24
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.24
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.23
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.23
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.23
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.23
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.23
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.23
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.23
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.22
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.22
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.21
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.21
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.21
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.21
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.2
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.2
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.18
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.18
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.18
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.17
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.17
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.17
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.16
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.16
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.16
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.16
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.16
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.16
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.15
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.15
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.15
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.13
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.13
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.12
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.12
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.12
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.12
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.11
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.11
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.1
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.1
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.1
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.09
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.09
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.09
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.09
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.08
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.08
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.08
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.08
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.07
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.07
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.07
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.07
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.06
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.06
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.06
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.04
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.04
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.03
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.03
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.03
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	99.02
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.02
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.01
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.01
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.01
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.0
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.0
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.0
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.0
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	98.99
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.99
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.99
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	98.97
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.96
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.96
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	98.95
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	98.95
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.95
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.95
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.94
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.93
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.93
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.93
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.92
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.92
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	98.91
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.91
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.9
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	98.9
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.9
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	98.89
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.89
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.89
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.87
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.87
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.87
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.86
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.86
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.86
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.85
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.85
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.85
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	98.84
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.83
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.82
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.81
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.81
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.8
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	98.79
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.78
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.78
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.78
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.77
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.77
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.76
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.76
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.75
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.74
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.74
d2avga1	110	Cardiac myosin binding protein C, different domain	98.73
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.73
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.73
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.72
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.72
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.72
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.72
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.72
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.71
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.7
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.7
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.7
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.69
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.69
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.68
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.67
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.66
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.66
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.66
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.66
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.65
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.64
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.63
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.62
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.62
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.62
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.61
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.61
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.61
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.6
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.58
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.57
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.57
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.56
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.56
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.55
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.54
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.54
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.52
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.51
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.49
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.48
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.48
d2avga1	110	Cardiac myosin binding protein C, different domain	98.47
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.44
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.43
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.43
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.41
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.4
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.4
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.39
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.38
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.38
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.37
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.37
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.34
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.33
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.31
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.29
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.29
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.28
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.28
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.27
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.26
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.25
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.25
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.24
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.23
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.21
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.2
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.19
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.19
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.19
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.19
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.18
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.18
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.16
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.14
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.13
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.09
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.08
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.01
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.99
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	97.99
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	97.99
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	97.97
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.97
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.96
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.95
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	97.94
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.9
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.87
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.8
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.71
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.7
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.69
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.67
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.64
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.4
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.22
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.21
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	96.76
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	96.55
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	96.14
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.14
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	96.11
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	96.1
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.1
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.08
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.08
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.03
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	95.98
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	95.98
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	95.95
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	95.89
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	95.87
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	95.85
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	95.81
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	95.79
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	95.76
d8faba1	103	Immunoglobulin light chain lambda variable domain,	95.74
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	95.72
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.69
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	95.67
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	95.67
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	95.64
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	95.61
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	95.58
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	95.53
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	95.4
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.38
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.37
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	95.31
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	95.3
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	95.3
d2hyma1	109	Interferon-alpha/beta receptor beta chain {Human (	95.27
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	95.26
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	95.26
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	95.11
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	95.1
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.08
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	95.06
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	94.94
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	94.93
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	94.9
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	94.88
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	94.79
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	94.79
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	94.72
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.72
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	94.71
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.7
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	94.66
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	94.65
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	94.64
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	94.62
d1xzwa1	119	Purple acid phosphatase, N-terminal domain {Sweet	94.56
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	94.56
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	94.55
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	94.52
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	94.49
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.44
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	94.39
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	94.31
d1f6fb1	96	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	94.29
d2qfra1	112	Purple acid phosphatase, N-terminal domain {Kidney	94.22
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	94.15
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	94.15
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	94.11
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.07
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	94.06
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	94.06
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	94.04
d1xzwa1	119	Purple acid phosphatase, N-terminal domain {Sweet	94.03
d2qfra1	112	Purple acid phosphatase, N-terminal domain {Kidney	94.01
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	93.98
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	93.91
d2hfta1	106	Extracellular region of human tissue factor {Human	93.9
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	93.82
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	93.72
d1f6fb1	96	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	93.72
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	93.69
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	93.68
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	93.47
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	93.45
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	93.45
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	93.41
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	93.38
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	93.32
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	93.22
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	93.19
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	93.17
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	93.06
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	93.06
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	93.04
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	93.02
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	92.89
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	92.85
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	92.56
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	92.53
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	92.45
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	92.43
d1a21a1	103	Extracellular region of human tissue factor {Rabbi	92.4
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	92.39
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	91.85
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	91.64
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	91.61
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	91.51
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	91.49
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	91.46
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	91.34
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	91.34
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	91.32
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	91.29
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	91.26
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	91.12
d2c4fu1	116	Extracellular region of human tissue factor {Human	91.09
d2c4fu1	116	Extracellular region of human tissue factor {Human	91.06
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	91.05
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	90.96
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	90.73
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	90.49
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	90.49
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	90.34
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	90.34
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	90.18
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	89.99
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	89.93
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	89.74
d2hfta1	106	Extracellular region of human tissue factor {Human	89.68
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	89.5
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	89.45
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	89.32
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	89.14
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	89.07
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	89.04
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	88.91
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	88.9
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	88.89
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	88.74
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	88.52
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	88.49
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	88.39
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	88.34
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	88.34
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	88.31
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	88.04
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	88.04
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	88.02
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	87.84
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	87.79
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	87.69
d2hyma1	109	Interferon-alpha/beta receptor beta chain {Human (	87.69
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	87.52
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	87.23
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	87.21
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	87.14
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	86.99
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	86.69
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	86.66
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	86.63
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	86.53
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	86.45
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	86.09
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	86.04
d1a21a1	103	Extracellular region of human tissue factor {Rabbi	85.54
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	85.48
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	85.14
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	84.95
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	84.91
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	84.9
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	84.87
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	84.74
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	84.68
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	84.64
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	84.62
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	84.17
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	84.15
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	83.54
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	83.48
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	83.47
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	83.38
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	83.3
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	83.28
d1edqa1	109	Chitinase A, N-terminal domain N {Serratia marcesc	83.23
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	82.76
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	82.64
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	82.6
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	82.14
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	82.08
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	81.93
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	81.92
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	81.62
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	81.57
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	81.56
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	81.52
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	81.5
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	81.46
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	81.3
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	81.2
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	81.04
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	81.02
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	80.7
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	80.69
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	80.61
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	80.53
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	80.52
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	80.42
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	80.38

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=3.7e-15  Score=114.29  Aligned_cols=95  Identities=27%  Similarity=0.426  Sum_probs=84.3

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEe
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  403 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n  403 (716)
                      +|++|.++.+...+.+++.|+|.+|..+++.+|.+|.|+++..++..|..........+.+++.+|.+++.|.|+|+|.|
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~n   80 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVN   80 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEE
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEEC
Confidence            47889999999999999999999988877878999999999988888988776677888999999999999999999999


Q ss_pred             CCCCCCCCCCCCceE
Q psy7040         404 KGGPGEPSDPTAPHI  418 (716)
Q Consensus       404 ~~g~~~~s~~~~~~~  418 (716)
                      ..|.|+++.....++
T Consensus        81 ~~G~s~~s~~~~~vt   95 (98)
T d1x5ya1          81 IAGRSEPATLLQPVT   95 (98)
T ss_dssp             TTEECCCCCCSSCBC
T ss_pred             CCcCCCCcCCCCCEE
Confidence            999998887655443

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=5.1e-15  Score=113.52  Aligned_cols=92  Identities=29%  Similarity=0.511  Sum_probs=78.2

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEeccc--CCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~--~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +.||..+.+..++.+++.|+|++|..+++.+|.+|.|+|+..++..|..+...  ..+.++|.||.+++.|.|+|+|.|.
T Consensus         2 P~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~n~   81 (98)
T d1x5ya1           2 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNI   81 (98)
T ss_dssp             CCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEET
T ss_pred             CCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEECC
Confidence            34566688889999999999999987778889999999999998899876543  3478999999999999999999999


Q ss_pred             CccCCCccccceEE
Q psy7040         133 EGESEPLETFSSII  146 (716)
Q Consensus       133 ~g~~~~s~~~~~~~  146 (716)
                      .|.|.++.....++
T Consensus        82 ~G~s~~s~~~~~vt   95 (98)
T d1x5ya1          82 AGRSEPATLLQPVT   95 (98)
T ss_dssp             TEECCCCCCSSCBC
T ss_pred             CcCCCCcCCCCCEE
Confidence            99998876654433

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.3e-14  Score=108.43  Aligned_cols=92  Identities=30%  Similarity=0.387  Sum_probs=78.5

Q ss_pred             CCCCCCceEE-EEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          55 LDPEGPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        55 ~~p~~~l~~~-~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +.|+.+.++. ..+.++|.|+|++|..++|.+|.+|.|+++..+...|..+.....++++|.+|.+++.|.|||+|.|..
T Consensus         2 P~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~   81 (97)
T d2crza1           2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKM   81 (97)
T ss_dssp             CCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEEESCSEEEEESCCTTCEEEECCEEECSS
T ss_pred             cCcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeecCCceEEEEcCCCCCEEEEEEEEEecCC
Confidence            3455666665 456789999999998888888999999999988888888877777899999999999999999999999


Q ss_pred             ccCCCccccceEE
Q psy7040         134 GESEPLETFSSII  146 (716)
Q Consensus       134 g~~~~s~~~~~~~  146 (716)
                      |.|.+|.....++
T Consensus        82 G~s~~S~~~~~~T   94 (97)
T d2crza1          82 GFGPFSEKCDITT   94 (97)
T ss_dssp             CBCCCCCCEEEEC
T ss_pred             eEcCCcCCCeEEe
Confidence            9999987765544

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.7e-13  Score=106.88  Aligned_cols=95  Identities=40%  Similarity=0.629  Sum_probs=79.2

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEeccc--CCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~--~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      ++.||..+.+..++.++|.|+|++|..++|.++.+|.++++......|..+...  ....+.+.||.+++.|.|||+|+|
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n   81 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKN   81 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEEC
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEEE
Confidence            456788889999999999999999987888889999999998888777665433  357899999999999999999999


Q ss_pred             cCcc-CCCccccceEEec
Q psy7040         132 KEGE-SEPLETFSSIIAR  148 (716)
Q Consensus       132 ~~g~-~~~s~~~~~~~~~  148 (716)
                      ..|. +.+|.....++.+
T Consensus        82 ~~G~~s~~S~~s~~vt~~   99 (104)
T d1bpva_          82 AAGAISPPSEPSDAITCR   99 (104)
T ss_dssp             TTSCEEEEEEEEEEECSC
T ss_pred             CCCCCCCCcCCCCCEEeC
Confidence            9996 6667666555543

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.5e-13  Score=108.43  Aligned_cols=107  Identities=22%  Similarity=0.331  Sum_probs=85.3

Q ss_pred             CCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc-eEEEeeecCCCC
Q psy7040         304 QGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI-WEKCAQTEGDTP  382 (716)
Q Consensus       304 ~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~~~~~~~~~~  382 (716)
                      .|.+.++...  +.+++...+|++|.++.+...+.+++.|+|.+|..+++ .|.+|.|+|+..+... +...........
T Consensus         2 ~G~G~pss~~--v~~~T~~~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g-~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~   78 (117)
T d1wfoa1           2 IGDGSPSHPP--ILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLAPSAR   78 (117)
T ss_dssp             CCCCCCCCCC--SCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCS-CCCEEEEEEEESSCCCSCCCEEEECTTCC
T ss_pred             ccCCCCCCCC--EEEECCCCCCcCCCCcEEEEecCCEEEEEEECCCCCCC-ceEEEeeeeeeccCCCceEeEEecCCceE
Confidence            4666666543  44455668899999999999999999999999877654 7999999998766433 333344566788


Q ss_pred             eEEecCCCCCCeEEEEEEEEeCCCCCCCCCC
Q psy7040         383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP  413 (716)
Q Consensus       383 ~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~  413 (716)
                      ++.|.+|.+++.|.|+|+|.|..|.|+++..
T Consensus        79 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  109 (117)
T d1wfoa1          79 QYTATGLKPESVYLFRITAQTRKGWGEAAEA  109 (117)
T ss_dssp             EEEEESCCSSSEEEEEEEEECSSCEEEEEEE
T ss_pred             EEEECCCCCCCEEEEEEEEECCCcCCCCcCC
Confidence            9999999999999999999999998877653

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.6e-13  Score=101.54  Aligned_cols=91  Identities=22%  Similarity=0.309  Sum_probs=76.5

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEe-cccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV-GKTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      .||.++.+..++.++|.|+|++|..+++.++.+|.++++..+...|... .....+++.|.+|.+++.|.|+|+|.|..|
T Consensus         2 ~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~n~~G   81 (96)
T d1x5xa1           2 SMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEG   81 (96)
T ss_dssp             CCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEECSSC
T ss_pred             ccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEeecCCCCEEEECCCCCCCEEEEEEEEEcCCc
Confidence            4667789999999999999999988888889999999987776655443 344568999999999999999999999999


Q ss_pred             cCCCccccceEE
Q psy7040         135 ESEPLETFSSII  146 (716)
Q Consensus       135 ~~~~s~~~~~~~  146 (716)
                      .|.+|......+
T Consensus        82 ~s~~S~~~~~~T   93 (96)
T d1x5xa1          82 KSNPSEVVEFTT   93 (96)
T ss_dssp             EEEECCCEEEEC
T ss_pred             EeCCCCCEEEEe
Confidence            999887766554

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.7e-12  Score=100.58  Aligned_cols=93  Identities=22%  Similarity=0.299  Sum_probs=77.6

Q ss_pred             CCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         322 FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       322 ~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      ...|++|.++.+...+.++|.|+|.+|...+ ++|.+|.|+|+..+...|...   .....++.|.+|.+++.|.|+|+|
T Consensus         8 ~~vP~~P~~l~v~~~s~~si~l~W~~P~~~~-g~i~~Y~v~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~~V~A   83 (103)
T d1x5ga1           8 VQLPGPAPNLRAYAASPTSITVTWETPVSGN-GEIQNYKLYYMEKGTDKEQDV---DVSSHSYTINGLKKYTEYSFRVVA   83 (103)
T ss_dssp             SSCCCCCSSCEEEEEETTEEEEECCCCSCCS-SCCSEEEEEEEETTCCCCCCE---EECSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCcccCCCcEEEEccCCEEEEEEECCcCCC-ccEEEEEEEEEeCCCceeEEE---eccccEEecCCCCCCCEEEEEEEE
Confidence            3568899999999999999999999987654 489999999998876655433   346678999999999999999999


Q ss_pred             EeCCCCCCCCCCCCceE
Q psy7040         402 VNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~~  418 (716)
                      .|..|.|.+|......+
T Consensus        84 ~n~~G~g~~S~~v~v~T  100 (103)
T d1x5ga1          84 YNKHGPGVSTPDVAVRT  100 (103)
T ss_dssp             ECSSCCCCBCCCCCEEC
T ss_pred             EcCCcCcCCCCCEEEEc
Confidence            99999998887655443

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.7e-13  Score=104.91  Aligned_cols=91  Identities=34%  Similarity=0.546  Sum_probs=78.8

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEe
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  403 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n  403 (716)
                      +|.+|.++.+..++.++|.|+|.+|..++|..+.+|.++++......|............+.+.+|.+++.|.|+|+|.|
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n   81 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKN   81 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEEC
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEEE
Confidence            57788889999999999999999988888888999999999988777777666677888999999999999999999999


Q ss_pred             CCCC-CCCCCCC
Q psy7040         404 KGGP-GEPSDPT  414 (716)
Q Consensus       404 ~~g~-~~~s~~~  414 (716)
                      ..|. |.+|..+
T Consensus        82 ~~G~~s~~S~~s   93 (104)
T d1bpva_          82 AAGAISPPSEPS   93 (104)
T ss_dssp             TTSCEEEEEEEE
T ss_pred             CCCCCCCCcCCC
Confidence            9996 5555443

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=4.5e-12  Score=98.77  Aligned_cols=95  Identities=31%  Similarity=0.504  Sum_probs=78.4

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC-CceEEEe-eecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS-PIWEKCA-QTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~-~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      .+|.+|.++.+...+.+++.|+|.++ .+++.+|.+|.|+++..+. ..|.... ........+.+.+|.+++.|.|+|+
T Consensus         9 ~pP~~P~~~~v~~~~~~sv~l~W~p~-~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~   87 (108)
T d1x4za1           9 SPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVR   87 (108)
T ss_dssp             CCCCCCCCCEEEECCSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEE
T ss_pred             CCCccCCCCEEEEccCCEEEEEEECC-CCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEEE
Confidence            56889999999999999999999865 4567789999999987653 4555443 3456778999999999999999999


Q ss_pred             EEeCCCCCCCCCCCCceE
Q psy7040         401 AVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~~  418 (716)
                      |.|..|.|.+|.++..++
T Consensus        88 A~N~~G~s~~S~pS~p~~  105 (108)
T d1x4za1          88 ALNMLGESEPSAPSRPYV  105 (108)
T ss_dssp             EEETTEECCCCCCCCCEE
T ss_pred             EECCCcCCCCCCCCCCEE
Confidence            999999999988765544

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2e-12  Score=102.80  Aligned_cols=94  Identities=31%  Similarity=0.503  Sum_probs=76.8

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC-ceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP-IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      ..|.+|.++.+..++.++|.|+|.+|. +++.+|.+|.|+++..... .|.... .......++|.+|.|++.|.|+|+|
T Consensus        14 ~~P~pP~~~~v~~~~~~sv~l~W~p~~-~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~v~~L~p~t~Y~frV~A   91 (117)
T d1uema_          14 DLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVA-NHVKTTLYTVRGLRPNTIYLFMVRA   91 (117)
T ss_dssp             CSCBCCCCCEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEE-EEECSSEEEECSCCTTCEEEEEEEE
T ss_pred             ccCcCCCCCEEEEccCCEEEEEEECCC-cCCCCeEEEEEEEeccCCceeeEEec-cccccccceECCCCCCCEEEEEEEE
Confidence            578899999999999999999999764 4566899999998776533 454433 3346678999999999999999999


Q ss_pred             EeCCCCCCCCCCCCceE
Q psy7040         402 VNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~~  418 (716)
                      .|..|.|.+|..+..++
T Consensus        92 ~N~~G~s~~S~~s~~v~  108 (117)
T d1uema_          92 INPQGLSDPSPMSDPVR  108 (117)
T ss_dssp             EETTEEEEECCCCCCEE
T ss_pred             EeCCcCCCCcCCCcCEE
Confidence            99999999888765544

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.2e-12  Score=100.72  Aligned_cols=96  Identities=29%  Similarity=0.469  Sum_probs=75.5

Q ss_pred             CCCCCCCCcEE--EeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         323 NQPGKPGTPEI--KDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       323 ~~p~~p~~~~~--~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      ..|.+|..+.+  ...+.+++.|+|.+|. ++|++|.+|.|+|+..++..+...........++.|.+|.+++.|.|+|+
T Consensus         9 ~~P~~P~~p~~~~~~~~~~sv~l~W~~P~-~~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~   87 (108)
T d1wf5a1           9 QLPHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLC   87 (108)
T ss_dssp             CCCCCCSSCEEEECSSSTTEEEEECCCCC-CCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCEEEEEEE
T ss_pred             cCCCCCCCCEEEEEeccCCEEEEEEECCC-CCCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCCEEEEEEE
Confidence            45666666544  3567789999999975 46678999999999876444444445566778999999999999999999


Q ss_pred             EEeCCCCCCCCCCCCceEe
Q psy7040         401 AVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~~~  419 (716)
                      |.|..|.|.+|.....++.
T Consensus        88 A~N~~G~s~~S~~~~~~t~  106 (108)
T d1wf5a1          88 AVNDVGKGQFSKDTERVSL  106 (108)
T ss_dssp             EEESSCEEEECCCCSCEEC
T ss_pred             EEcCCcCCCCcCCcCCEEC
Confidence            9999999998887766553

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.3e-12  Score=100.78  Aligned_cols=90  Identities=28%  Similarity=0.496  Sum_probs=73.3

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC-cEEEecccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-VWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~-~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      +|..++.+..++.+++.|+|++|..++|.++.+|.++++..... .|........+.+.|.+|++++.|.|+|+|.|..|
T Consensus        13 ~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G   92 (107)
T d2crma1          13 IPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGG   92 (107)
T ss_dssp             CCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEEEEETTE
T ss_pred             CCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeecCCccEEEEeccCCCCEEEEEEEEECCCc
Confidence            34444556678999999999999877888899999999866544 45555566678999999999999999999999999


Q ss_pred             cCCCccccceE
Q psy7040         135 ESEPLETFSSI  145 (716)
Q Consensus       135 ~~~~s~~~~~~  145 (716)
                      .|.+|......
T Consensus        93 ~s~~S~~v~v~  103 (107)
T d2crma1          93 QSAVSESLLVQ  103 (107)
T ss_dssp             ECCCCCCCCCC
T ss_pred             CcCCCCcEEEE
Confidence            99988766543

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-12  Score=97.42  Aligned_cols=89  Identities=22%  Similarity=0.311  Sum_probs=74.0

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .+|.++++..++.+++.|+|++|.. ++.++.+|.|+++..+...+... ....++++|.+|.+++.|.|+|+|.|..|.
T Consensus         2 ~~P~~~~v~~~s~~si~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~   79 (93)
T d1x4xa1           2 DQCKPPQVTCRSATCAQVNWEVPLS-NGTDVTEYRLEWGGVEGSMQICY-CGPGLSYEIKGLSPATTYYCRVQALSVVGA   79 (93)
T ss_dssp             CCCCCCCCEEEETTEEEEECCCCSC-SSSCCCEEEEEEESSTTSCCEEE-EESCSEEEEESCCSSCEEEEEEEEECSSCC
T ss_pred             cCCCCCEEEEeCCCeEEEEEEeccc-CCCeeEEEEEEEccCCCcceEee-cCCccEEEEcccceeeEEEEEEEEEECCcC
Confidence            4667788999999999999999875 45679999999998776655443 445689999999999999999999999999


Q ss_pred             CCCccccceEE
Q psy7040         136 SEPLETFSSII  146 (716)
Q Consensus       136 ~~~s~~~~~~~  146 (716)
                      |.+|......+
T Consensus        80 s~~S~~~~~~T   90 (93)
T d1x4xa1          80 GPFSEVVACVT   90 (93)
T ss_dssp             CCBCCCEEEEC
T ss_pred             cCCCCcEEEEe
Confidence            99887665544

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=3.9e-12  Score=99.11  Aligned_cols=90  Identities=30%  Similarity=0.504  Sum_probs=71.5

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC-CcEEEecc---cCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWIPVGK---TREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~~---~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      +.||..+.+..++.+++.|+|.++. ++|.+|.+|.|+|+..+. ..|.....   ...+++.|.+|.+++.|.|+|+|.
T Consensus        11 P~~P~~~~v~~~~~~sv~l~W~p~~-~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   89 (108)
T d1x4za1          11 PEAPDRPTISTASETSVYVTWIPRG-NGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRAL   89 (108)
T ss_dssp             CCCCCCCEEEECCSSEEEEECCCCC-CTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEEEE
T ss_pred             CccCCCCEEEEccCCEEEEEEECCC-CCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEEEEE
Confidence            4456668889999999999998765 577789999999986543 45544332   235789999999999999999999


Q ss_pred             ecCccCCCccccceE
Q psy7040         131 NKEGESEPLETFSSI  145 (716)
Q Consensus       131 ~~~g~~~~s~~~~~~  145 (716)
                      |..|.|.+|.....+
T Consensus        90 N~~G~s~~S~pS~p~  104 (108)
T d1x4za1          90 NMLGESEPSAPSRPY  104 (108)
T ss_dssp             ETTEECCCCCCCCCE
T ss_pred             CCCcCCCCCCCCCCE
Confidence            999999888765443

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-12  Score=101.25  Aligned_cols=93  Identities=23%  Similarity=0.323  Sum_probs=80.8

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      ..|++|.++.+...+.+++.|+|.+|..+.++.+.+|.|+++..+...+............+.+.+|.+++.|.|+|+|.
T Consensus         9 ~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A~   88 (107)
T d1x5fa1           9 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQ   88 (107)
T ss_dssp             CCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEEE
Confidence            56889999999999999999999998766677899999999987766666666667788999999999999999999999


Q ss_pred             eCCCCCCCCCCCC
Q psy7040         403 NKGGPGEPSDPTA  415 (716)
Q Consensus       403 n~~g~~~~s~~~~  415 (716)
                      |..|.|.+|....
T Consensus        89 n~~G~g~~S~~i~  101 (107)
T d1x5fa1          89 NKHGSGESSAPLR  101 (107)
T ss_dssp             CSSCEEEECCCEE
T ss_pred             eCCCCcCCCCCEE
Confidence            9999988776443

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.2e-13  Score=100.43  Aligned_cols=86  Identities=19%  Similarity=0.179  Sum_probs=68.8

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEe-cccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV-GKTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      .||..+.+...+.+++.|+|++|. +++.+|.+|.|+|+..++..+... .....+++.|.+|.+++.|.|+|+|.|..|
T Consensus         2 ~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~I~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~G   80 (93)
T d2vkwa2           2 SAPKLEGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQG   80 (93)
T ss_dssp             CCCEEEEEECTTSSCEEEEEECCC-CTTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCccCEeEEcCCCEEEEEeeCCC-CCcCceEEEEEEeeecCcceeeeeeccCCceEEEEeccccceEEEEEEEEEcCCC
Confidence            355556777888999999999986 677889999999987765433222 223458999999999999999999999999


Q ss_pred             cCCCcccc
Q psy7040         135 ESEPLETF  142 (716)
Q Consensus       135 ~~~~s~~~  142 (716)
                      .|.++...
T Consensus        81 ~s~ps~~~   88 (93)
T d2vkwa2          81 KSKAAHFV   88 (93)
T ss_dssp             ECCCEEEE
T ss_pred             CcCCEeEE
Confidence            99987543

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=5.8e-12  Score=94.95  Aligned_cols=89  Identities=17%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .++..|++...+.++|.|+|++|....+..+.+|.|++...+.. +...  ...++++|.||+|++.|.|+|+|.|..|.
T Consensus         4 ~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~-~~~~--~~~t~~~i~~L~p~t~Y~~rV~A~n~~G~   80 (94)
T d1x5aa1           4 LSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEE-WHQM--VLEPRVLLTKLQPDTTYIVRVRTLTPLGP   80 (94)
T ss_dssp             CCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCE-EEEE--ESSSEEEEESCCSSCEEEEEEEEECSSSC
T ss_pred             CCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCce-EEEe--eccCEEEECCCCCCCEEEEEEEEEcCCcC
Confidence            34556899999999999999998765566678999999876543 2222  23489999999999999999999999999


Q ss_pred             CCCccccceEEe
Q psy7040         136 SEPLETFSSIIA  147 (716)
Q Consensus       136 ~~~s~~~~~~~~  147 (716)
                      |.+|......+.
T Consensus        81 g~~S~~~~~~T~   92 (94)
T d1x5aa1          81 GPFSPDHEFRTS   92 (94)
T ss_dssp             CCCCCCEEEECC
T ss_pred             cCCCCCEEEEeC
Confidence            998876665553

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.7e-12  Score=98.69  Aligned_cols=90  Identities=21%  Similarity=0.293  Sum_probs=73.8

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .||..+++..++.++|.|+|++|... ++++.+|.|+|+..+...|.... ...+++.|.||.|++.|.|+|+|.|..|.
T Consensus        12 ~~P~~l~v~~~s~~si~l~W~~P~~~-~g~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~   89 (103)
T d1x5ga1          12 GPAPNLRAYAASPTSITVTWETPVSG-NGEIQNYKLYYMEKGTDKEQDVD-VSSHSYTINGLKKYTEYSFRVVAYNKHGP   89 (103)
T ss_dssp             CCCSSCEEEEEETTEEEEECCCCSCC-SSCCSEEEEEEEETTCCCCCCEE-ECSSEEEECSCCTTCEEEEEEEEECSSCC
T ss_pred             ccCCCcEEEEccCCEEEEEEECCcCC-CccEEEEEEEEEeCCCceeEEEe-ccccEEecCCCCCCCEEEEEEEEEcCCcC
Confidence            45667899999999999999998754 45699999999988776664433 34579999999999999999999999999


Q ss_pred             CCCccccceEEe
Q psy7040         136 SEPLETFSSIIA  147 (716)
Q Consensus       136 ~~~s~~~~~~~~  147 (716)
                      |.+|......+.
T Consensus        90 g~~S~~v~v~T~  101 (103)
T d1x5ga1          90 GVSTPDVAVRTL  101 (103)
T ss_dssp             CCBCCCCCEECC
T ss_pred             cCCCCCEEEEcC
Confidence            988876655543

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=9.1e-13  Score=102.98  Aligned_cols=102  Identities=26%  Similarity=0.511  Sum_probs=78.9

Q ss_pred             EEEEEecCCCCCCCCe-EEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCe
Q psy7040         215 VEVIVLDKPSPPGGPL-KVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHK  293 (716)
Q Consensus       215 ~~~~v~~~p~~p~~~~-~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  293 (716)
                      +.|.|++.|.+|..|. .+.....+++.|+|.+|.+ ++.++.+|.|+++..+...+............+.|.+|.+++.
T Consensus         3 ~~l~v~~~P~~P~~p~~~~~~~~~~sv~l~W~~P~~-~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   81 (108)
T d1wf5a1           3 AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARS   81 (108)
T ss_dssp             CCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCCCC-CSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCE
T ss_pred             cccEEecCCCCCCCCEEEEEeccCCEEEEEEECCCC-CCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCCE
Confidence            4456788899988752 3335677899999998754 6668999999998766554444444456678899999999999


Q ss_pred             EEEEEEEEcCCCCCCCCcccceEE
Q psy7040         294 YKFRVRAVNKQGKSEPLTTTASIE  317 (716)
Q Consensus       294 y~~~v~a~n~~g~~~~~~~~~~~~  317 (716)
                      |.|+|+|.|..|.|.++..+..++
T Consensus        82 Y~frV~A~N~~G~s~~S~~~~~~t  105 (108)
T d1wf5a1          82 YQFRLCAVNDVGKGQFSKDTERVS  105 (108)
T ss_dssp             EEEEEEEEESSCEEEECCCCSCEE
T ss_pred             EEEEEEEEcCCcCCCCcCCcCCEE
Confidence            999999999999988877665443

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.34  E-value=1.4e-12  Score=101.88  Aligned_cols=90  Identities=22%  Similarity=0.450  Sum_probs=68.1

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCC-CCcEEEeccc-------------CCCeEEecCCCCCcE
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE-TGVWIPVGKT-------------REPEMDVTGLTPGHE  122 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~-------------~~~~~~i~~L~~~~~  122 (716)
                      ||..+.+..++.+++.|+|.+|. ++|.+|.+|.|+|+..+ ...|......             ..+.++|.+|+|++.
T Consensus         2 PP~~p~v~~~~~~sv~l~W~~P~-~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   80 (107)
T d2ic2a1           2 PPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHT   80 (107)
T ss_dssp             CCCCCEEEECC---EEEEEEEEC-CSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEE
T ss_pred             cCcCCEEEEEECCEEEEEEEeCc-cccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcE
Confidence            66667899999999999999987 56788999999998654 3345433211             125799999999999


Q ss_pred             EEEEEEEEecCccCCCccccceEEe
Q psy7040         123 YKFRVKALNKEGESEPLETFSSIIA  147 (716)
Q Consensus       123 y~~~v~a~~~~g~~~~s~~~~~~~~  147 (716)
                      |.|||+|.|..|.|.+|.....+..
T Consensus        81 Y~frV~A~N~~G~s~~S~~s~~~~~  105 (107)
T d2ic2a1          81 YRFRILAVYSNNDNKESNTSAKFYL  105 (107)
T ss_dssp             EEEEEEEEETTSCEEECCCCCCEEE
T ss_pred             EEEEEEEEcCCCCCCCCCCCCCEEc
Confidence            9999999999999998877665554

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.4e-12  Score=99.25  Aligned_cols=93  Identities=22%  Similarity=0.350  Sum_probs=74.6

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeee---cCCCCeEEecCCCCCCeEEEEEE
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT---EGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      .|++|..+.+ ....+++.|.|.+|..++|.+|.+|.|+|+..+...|......   ......+.+.+|.+++.|.|+|+
T Consensus         2 vP~~P~~~~~-~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~   80 (101)
T d2haza1           2 TPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLA   80 (101)
T ss_dssp             CCCCCEEEEE-EECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEE
T ss_pred             cCcCCccCEE-EeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEEE
Confidence            5777864444 5677899999999988888889999999998877666554432   33457899999999999999999


Q ss_pred             EEeCCCCCCCCCCCCce
Q psy7040         401 AVNKGGPGEPSDPTAPH  417 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~  417 (716)
                      |.|..|.|++|....+.
T Consensus        81 A~N~~G~g~~S~~~~~~   97 (101)
T d2haza1          81 ALNGKGLGEISAASEFK   97 (101)
T ss_dssp             EEETTEECCCCCCEEEE
T ss_pred             EEeCCcCcCCCCceeEE
Confidence            99999999988765433

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-12  Score=98.48  Aligned_cols=86  Identities=20%  Similarity=0.323  Sum_probs=73.9

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      |.+|.++.+...+.+++.|.|.+|. +++.+|.+|.|+|+..+ ..|...........++.+.+|.+++.|.|+|+|.|.
T Consensus         1 P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~I~~Y~i~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~   78 (93)
T d2vkwa2           1 PSAPKLEGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALS-SEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQ   78 (93)
T ss_dssp             CCCCEEEEEECTTSSCEEEEEECCC-CTTSCCCEEEEEEEETT-SCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCccCEeEEcCCCEEEEEeeCCC-CCcCceEEEEEEeeecC-cceeeeeeccCCceEEEEeccccceEEEEEEEEEcC
Confidence            6788899999999999999999985 56778999999999876 445455556678889999999999999999999999


Q ss_pred             CCCCCCCC
Q psy7040         405 GGPGEPSD  412 (716)
Q Consensus       405 ~g~~~~s~  412 (716)
                      .|.|+++.
T Consensus        79 ~G~s~ps~   86 (93)
T d2vkwa2          79 QGKSKAAH   86 (93)
T ss_dssp             TEECCCEE
T ss_pred             CCCcCCEe
Confidence            99988763

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.8e-13  Score=102.98  Aligned_cols=93  Identities=20%  Similarity=0.286  Sum_probs=77.1

Q ss_pred             cCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         319 KNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       319 ~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      ++....|++|.++.+...+.+++.|+|.+|...+| .|.+|+|+|+..+...............++.|.+|.+++.|.|+
T Consensus         5 ~T~e~vP~~p~~l~~~~~~~~sv~l~W~~P~~~ng-~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   83 (106)
T d1wfna1           5 RTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIE   83 (106)
T ss_dssp             CSSCCSCCCCSCCEEESCCSSEEEEECCCCTTCCS-CCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEE
T ss_pred             EcCCCCCcCCCCcEEEEecCCEEEEEEECCCCCCC-cEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEEEE
Confidence            44557899999999999999999999999877655 79999999988764443333444567789999999999999999


Q ss_pred             EEEEeCCCCCCCCC
Q psy7040         399 VLAVNKGGPGEPSD  412 (716)
Q Consensus       399 v~a~n~~g~~~~s~  412 (716)
                      |+|.|..|.|+.+.
T Consensus        84 V~A~n~~G~g~~s~   97 (106)
T d1wfna1          84 VAAMTSKGQGQVSA   97 (106)
T ss_dssp             EEEECSSCEEEEEE
T ss_pred             EEEECCCCCcCCcC
Confidence            99999999887664

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=4e-12  Score=96.81  Aligned_cols=89  Identities=20%  Similarity=0.264  Sum_probs=74.8

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC-CceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS-PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      .++.+|.++.+...+.+++.|+|.+|...++..|.+|+|+|+..+. ..|...........++.|.+|.|++.|.|+|+|
T Consensus         5 ~P~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   84 (95)
T d2ibga1           5 DPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQS   84 (95)
T ss_dssp             CCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEE
Confidence            3445688899999999999999998776667789999999997653 446655555677889999999999999999999


Q ss_pred             EeCCCCCCCC
Q psy7040         402 VNKGGPGEPS  411 (716)
Q Consensus       402 ~n~~g~~~~s  411 (716)
                      +|..|.|++|
T Consensus        85 ~n~~G~s~~S   94 (95)
T d2ibga1          85 FSAASASEFS   94 (95)
T ss_dssp             ECSSCBCCCC
T ss_pred             EeCCccCCCC
Confidence            9999999876

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.7e-12  Score=97.59  Aligned_cols=83  Identities=23%  Similarity=0.324  Sum_probs=68.6

Q ss_pred             EEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc-----cCCCeEEecCCCCCcEEEEEEEEEecCccCCC
Q psy7040          64 SNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK-----TREPEMDVTGLTPGHEYKFRVKALNKEGESEP  138 (716)
Q Consensus        64 ~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~-----~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~  138 (716)
                      .....+++.|+|++|..++|.+|.+|.|+|+..+...|.....     .....+.|.||.+++.|.|||+|.|..|.|.+
T Consensus        11 ~~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N~~G~g~~   90 (101)
T d2haza1          11 VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI   90 (101)
T ss_dssp             EEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred             EEeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEEEEEeCCcCcCC
Confidence            3567889999999998788889999999999888776654432     12378999999999999999999999999999


Q ss_pred             ccccceEE
Q psy7040         139 LETFSSII  146 (716)
Q Consensus       139 s~~~~~~~  146 (716)
                      |......+
T Consensus        91 S~~~~~~T   98 (101)
T d2haza1          91 SAASEFKT   98 (101)
T ss_dssp             CCCEEEEC
T ss_pred             CCceeEEe
Confidence            87665443

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=8.8e-12  Score=93.94  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=73.3

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEe
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  403 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n  403 (716)
                      +|.+|.+|++...+.++|+|+|.+|....++.+.+|.|++...+. .+...    ....+++|.+|.+++.|.|+|+|.|
T Consensus         2 ~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~-~~~~~----~~~t~~~i~~L~p~t~Y~~rV~A~n   76 (94)
T d1x5aa1           2 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDE-EWHQM----VLEPRVLLTKLQPDTTYIVRVRTLT   76 (94)
T ss_dssp             CCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSC-EEEEE----ESSSEEEEESCCSSCEEEEEEEEEC
T ss_pred             cCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCc-eEEEe----eccCEEEECCCCCCCEEEEEEEEEc
Confidence            577899999999999999999999765555567899999987653 22222    2467899999999999999999999


Q ss_pred             CCCCCCCCCCCCceE
Q psy7040         404 KGGPGEPSDPTAPHI  418 (716)
Q Consensus       404 ~~g~~~~s~~~~~~~  418 (716)
                      ..|.|.+|......+
T Consensus        77 ~~G~g~~S~~~~~~T   91 (94)
T d1x5aa1          77 PLGPGPFSPDHEFRT   91 (94)
T ss_dssp             SSSCCCCCCCEEEEC
T ss_pred             CCcCcCCCCCEEEEe
Confidence            999999887654443

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.9e-12  Score=98.00  Aligned_cols=97  Identities=25%  Similarity=0.423  Sum_probs=77.0

Q ss_pred             CCCCCCCCCCCcEE-EeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         320 NPFNQPGKPGTPEI-KDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       320 ~~~~~p~~p~~~~~-~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      +....|++|.++.+ .....+++.|+|.+|..+++.++..|.++++......+... ........+.+.+|++++.|.|+
T Consensus         6 T~~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~r   84 (107)
T d2crma1           6 TCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEM-IYSGATREHLCDRLNPGCFYRLR   84 (107)
T ss_dssp             SCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEE-EECSSCSEEEECSCCTTSCEEEE
T ss_pred             CCCCCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEE-eecCCccEEEEeccCCCCEEEEE
Confidence            44467888887654 45788999999999888777789999999987664443332 23456788999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCce
Q psy7040         399 VLAVNKGGPGEPSDPTAPH  417 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~  417 (716)
                      |+|.|..|.|.+|+.....
T Consensus        85 V~A~n~~G~s~~S~~v~v~  103 (107)
T d2crma1          85 VYCISDGGQSAVSESLLVQ  103 (107)
T ss_dssp             EEEEETTEECCCCCCCCCC
T ss_pred             EEEECCCcCcCCCCcEEEE
Confidence            9999999999988766543

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.7e-12  Score=98.33  Aligned_cols=92  Identities=25%  Similarity=0.433  Sum_probs=76.4

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      |.+|.++.+...+.+++.|+|.+|..+++..+..|.++++..+...|.... ......++.|.+|.+++.|.|+|+|.|.
T Consensus         1 P~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~v~~L~p~t~Y~~rV~A~n~   79 (96)
T d1x5xa1           1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPK-YDGEDLAYTVKNLRRSTKYKFKVIAYNS   79 (96)
T ss_dssp             CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEE-EEESCSEEEEESCCSSCEEEEEEEEECS
T ss_pred             CccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEe-ecCCCCEEEECCCCCCCEEEEEEEEEcC
Confidence            567888999999999999999998888888899999998877655544333 3456788999999999999999999999


Q ss_pred             CCCCCCCCCCCce
Q psy7040         405 GGPGEPSDPTAPH  417 (716)
Q Consensus       405 ~g~~~~s~~~~~~  417 (716)
                      .|.|.+|......
T Consensus        80 ~G~s~~S~~~~~~   92 (96)
T d1x5xa1          80 EGKSNPSEVVEFT   92 (96)
T ss_dssp             SCEEEECCCEEEE
T ss_pred             CcEeCCCCCEEEE
Confidence            9998888765443

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.8e-12  Score=97.52  Aligned_cols=90  Identities=29%  Similarity=0.441  Sum_probs=73.4

Q ss_pred             CCCCCCCCeEE-eEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEE
Q psy7040         222 KPSPPGGPLKV-SNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA  300 (716)
Q Consensus       222 ~p~~p~~~~~~-~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a  300 (716)
                      +|.++..+ .+ .....++++|+|++|..++|.++..|.|+++..+...|.....  +....++|.+|.+++.|.|+|+|
T Consensus         1 PP~p~~pp-~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A   77 (97)
T d2crza1           1 PPGPCLPP-RLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYSFRLRA   77 (97)
T ss_dssp             CCCCCCCC-EECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEE--ESCSEEEEESCCTTCEEEECCEE
T ss_pred             CcCcCCCC-EEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeec--CCceEEEEcCCCCCEEEEEEEEE
Confidence            35555553 33 3456789999999988888888999999999888888877654  45688999999999999999999


Q ss_pred             EcCCCCCCCCcccc
Q psy7040         301 VNKQGKSEPLTTTA  314 (716)
Q Consensus       301 ~n~~g~~~~~~~~~  314 (716)
                      .|..|.+.++....
T Consensus        78 ~N~~G~s~~S~~~~   91 (97)
T d2crza1          78 ANKMGFGPFSEKCD   91 (97)
T ss_dssp             ECSSCBCCCCCCEE
T ss_pred             ecCCeEcCCcCCCe
Confidence            99999988877653

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.2e-12  Score=99.49  Aligned_cols=91  Identities=26%  Similarity=0.531  Sum_probs=74.1

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC-CcEEEecc-cCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWIPVGK-TREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +.||..+.+..++.++|.|+|++|. +++.++.+|.|+++.... ..|..+.. ...+.++|.+|.|++.|.|+|+|.|.
T Consensus        16 P~pP~~~~v~~~~~~sv~l~W~p~~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~   94 (117)
T d1uema_          16 PGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINP   94 (117)
T ss_dssp             CBCCCCCEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEEEEEEEET
T ss_pred             CcCCCCCEEEEccCCEEEEEEECCC-cCCCCeEEEEEEEeccCCceeeEEeccccccccceECCCCCCCEEEEEEEEEeC
Confidence            4577789999999999999999775 566789999998876554 45665543 34589999999999999999999999


Q ss_pred             CccCCCccccceEE
Q psy7040         133 EGESEPLETFSSII  146 (716)
Q Consensus       133 ~g~~~~s~~~~~~~  146 (716)
                      .|.+.++.....++
T Consensus        95 ~G~s~~S~~s~~v~  108 (117)
T d1uema_          95 QGLSDPSPMSDPVR  108 (117)
T ss_dssp             TEEEEECCCCCCEE
T ss_pred             CcCCCCcCCCcCEE
Confidence            99999887765443

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.2e-12  Score=98.22  Aligned_cols=95  Identities=23%  Similarity=0.305  Sum_probs=78.0

Q ss_pred             CCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEE
Q psy7040         320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV  399 (716)
Q Consensus       320 ~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v  399 (716)
                      ++..+|.+|.++.+...+.+++.|+|.+|.. ++.++.+|.|+++......+ ...........+.+.+|.+++.|.|+|
T Consensus         6 T~~~~P~~P~~~~~~~~~~~sv~l~W~pp~~-~~~~i~~Y~i~~~~~~~~~~-~~~~~~~~~~~~~~~~L~p~t~Y~frV   83 (105)
T d1x3da1           6 TLSCEPDIPNPPRIANRTKNSLTLQWKAPSD-NGSKIQNFVLEWDEGKGNGE-FCQCYMGSQKQFKITKLSPAMGCKFRL   83 (105)
T ss_dssp             CCCSCCCCCCCCEEEEEETTEEEEECCCCCC-CSSCEEEEEEEECTTTSSSC-CEEEEEESCSEEEEESCCTTCEEEEEC
T ss_pred             CCCCCCcCCCCCEEEEccCCEEEEEEECCCC-CcCccEEEEEEEecCCCcce-eEEEecCCccEEEecCCcCCcEEEEEE
Confidence            4557899999999999999999999999754 56689999999987664433 223335577899999999999999999


Q ss_pred             EEEeCCCCCCCCCCCCc
Q psy7040         400 LAVNKGGPGEPSDPTAP  416 (716)
Q Consensus       400 ~a~n~~g~~~~s~~~~~  416 (716)
                      +|.|..|.|++|+....
T Consensus        84 ~A~N~~G~s~~S~~~~~  100 (105)
T d1x3da1          84 SARNDYGTSGFSEEVLY  100 (105)
T ss_dssp             CEEESSCBCCCCCCEEE
T ss_pred             EEECCCeEcCCCCcEEE
Confidence            99999999998876543

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6e-12  Score=95.86  Aligned_cols=85  Identities=25%  Similarity=0.357  Sum_probs=70.6

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc--cCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      +++||.+|++..++.+++.|+|++|.   +.++.+|+|+++..+...+.....  ...++++|.||.|++.|.|+|+|.|
T Consensus         5 ~vp~P~~l~v~~~t~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~   81 (95)
T d2fnba_           5 EVPQLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLI   81 (95)
T ss_dssp             CSCCCTTCEEECCCSSCEEEECCCCC---CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEE
T ss_pred             CcCcCCCeEEEEEcCCEEEEEEEecC---CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEe
Confidence            45688889999999999999999874   345999999998877666654432  3358999999999999999999999


Q ss_pred             cCccCCCccc
Q psy7040         132 KEGESEPLET  141 (716)
Q Consensus       132 ~~g~~~~s~~  141 (716)
                      ..|.|.++..
T Consensus        82 ~~g~s~p~~~   91 (95)
T d2fnba_          82 NGGESAPTTL   91 (95)
T ss_dssp             TTEECCCCEE
T ss_pred             CCcEeCCEEE
Confidence            9999887644

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.31  E-value=9.2e-12  Score=95.80  Aligned_cols=94  Identities=26%  Similarity=0.431  Sum_probs=76.0

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCce-EEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW-EKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      .+|.+|.++.+. ...+++.|+|.+|.. +++++.+|.|+++......| ...........++.+.+|.+++.|.|+|+|
T Consensus         4 dvP~~P~~~~v~-~~~~sv~lsW~pp~~-~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A   81 (100)
T d1cfba1           4 DVPNAPKLTGIT-CQADKAEIHWEQQGD-NRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIA   81 (100)
T ss_dssp             CCCCCCEEEEEE-ECSSEEEEEEECCCC-TTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEEEE
T ss_pred             cCCCcCcCcEEE-EcCCEEEEEEcCCcc-cccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEEEEE
Confidence            578999999986 567899999998754 56789999999997765443 334444456678999999999999999999


Q ss_pred             EeCCCCCCCCCCCCceE
Q psy7040         402 VNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~~  418 (716)
                      .|..|.|++|..+..++
T Consensus        82 ~n~~G~g~~S~~s~~vt   98 (100)
T d1cfba1          82 FNKIGASPPSAHSDSCT   98 (100)
T ss_dssp             EETTEECCCCCCCCCEE
T ss_pred             EeCCcCCCCcCCCcCEE
Confidence            99999999988766554

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=2.6e-12  Score=102.85  Aligned_cols=94  Identities=22%  Similarity=0.289  Sum_probs=76.3

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEE----cCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKY----DPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~----~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      +.+|.++.+..++.++|.|+|++|..+++.++.+|.|+|+    +.....|..+.....++++|.+|++++.|.|+|+|.
T Consensus        16 p~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   95 (120)
T d1wfua_          16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVT   95 (120)
T ss_dssp             CCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEEEEEEE
T ss_pred             CCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeeccccccEEeCCCCCCCcEeeEEEEEE
Confidence            3445667788899999999999998777777877766654    445667877777777899999999999999999999


Q ss_pred             ecCccCCCccccceEEec
Q psy7040         131 NKEGESEPLETFSSIIAR  148 (716)
Q Consensus       131 ~~~g~~~~s~~~~~~~~~  148 (716)
                      |..|.+.++......+..
T Consensus        96 n~~G~s~~S~~~~~~T~~  113 (120)
T d1wfua_          96 SPSGEYEYSPVVSVATTR  113 (120)
T ss_dssp             CSSSCEEECCCEEEECCC
T ss_pred             eCCcEeCCCCCEEEEeCC
Confidence            999999988777665543

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.7e-12  Score=115.49  Aligned_cols=189  Identities=14%  Similarity=0.072  Sum_probs=83.8

Q ss_pred             CCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEE
Q psy7040         222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV  301 (716)
Q Consensus       222 ~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~  301 (716)
                      .|.+|.+ +.+...+.+++.|+|.+|...+| .+.+|.|+++......+..      .........+.+...|.+++.|.
T Consensus         2 ~Ps~P~~-~~~~~~s~~si~vsW~pP~~~ng-~i~~Y~V~~~~~~~~~~~~------~~~~~~~~~~~~~~~y~~~v~~~   73 (196)
T d2dtge2           2 NPSVPLD-PISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELF------ELDYCLKGLKLPSRTWSPPFESE   73 (196)
T ss_dssp             CCCCCEE-EEEEECSSSCEEEEEECCCCSSS-SCSEEECCEEEECCCCSCT------TCSSSCSCCCCCC----------
T ss_pred             cCcCCcC-CEEEeccCCEEEEEEECCCCCCC-cEEEEEEEEEcCCCCCcee------EEeeEEeccccceeEEEEEEEEE
Confidence            5888988 88999999999999999887766 6999999887654433221      12233334577888999999999


Q ss_pred             cCCCCCCCCcccceEEec----CCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeee
Q psy7040         302 NKQGKSEPLTTTASIEAK----NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT  377 (716)
Q Consensus       302 n~~g~~~~~~~~~~~~~~----~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~  377 (716)
                      +..+.+............    .+...+..+.++.+.......+.+.|..+..... ....|.+.+.......  .....
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~  150 (196)
T d2dtge2          74 DSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRK-RRSLGDVGNAGNNEEH--RPFEK  150 (196)
T ss_dssp             -----------------------------------------------------------------------CC--SCSCE
T ss_pred             cCCccccCcCCccceecCCCCccccccccCCcCcEEEeccCCceeecccCcCCCcc-ceEEEEEEeecCCCcc--EEEEe
Confidence            877765444332211111    1111222344455555566667777776433221 1222222222222111  12233


Q ss_pred             cCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeec
Q psy7040         378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA  421 (716)
Q Consensus       378 ~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~  421 (716)
                      .....++.|.+|.|++.|.|+|+|+|..|.+..+.....+..++
T Consensus       151 ~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~rT  194 (196)
T d2dtge2         151 VVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSART  194 (196)
T ss_dssp             ECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEEC
T ss_pred             ccceEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceEEeeC
Confidence            45678999999999999999999999999988776666665543

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=7.4e-12  Score=93.00  Aligned_cols=83  Identities=20%  Similarity=0.248  Sum_probs=70.4

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      ++||.+|++..++.+++.|+|++|.    +.+.+|.|+|+..++..+........+++.|.+|.|++.|.|+|+|.+..|
T Consensus         1 l~~P~nl~v~~~~~~s~~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~   76 (86)
T d1tdqa3           1 LDSPRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQ   76 (86)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCC----SCCSEEEEEEECSSSCCEEEEEESSCSEEEECCCCTTCCEEEEEEEEETTE
T ss_pred             CccCCCCEEEEecCCEEEEEEeCCC----CCccceEEEEecccccceEEEeCCCccEEEECCCccccEEEEEEEEEcCCC
Confidence            4688889999999999999999875    349999999998776655554455568999999999999999999999999


Q ss_pred             cCCCccc
Q psy7040         135 ESEPLET  141 (716)
Q Consensus       135 ~~~~s~~  141 (716)
                      .|.++..
T Consensus        77 ~s~p~~~   83 (86)
T d1tdqa3          77 QSLESTV   83 (86)
T ss_dssp             ECCCEEE
T ss_pred             EECCEEe
Confidence            8877643

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=8.8e-12  Score=97.04  Aligned_cols=91  Identities=21%  Similarity=0.205  Sum_probs=72.7

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEE--ecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIP--VGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~--~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      .||.+|.+..++.+++.|+|++|..+.++++.+|.|+++..+...+..  ......++++|.+|.|++.|.|+|+|.|..
T Consensus        12 ~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A~n~~   91 (107)
T d1x5fa1          12 SAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKH   91 (107)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEECSS
T ss_pred             cCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEEEeCC
Confidence            344557888999999999999987666778999999998766544433  334446899999999999999999999999


Q ss_pred             ccCCCccccceEE
Q psy7040         134 GESEPLETFSSII  146 (716)
Q Consensus       134 g~~~~s~~~~~~~  146 (716)
                      |.|.+|......+
T Consensus        92 G~g~~S~~i~v~T  104 (107)
T d1x5fa1          92 GSGESSAPLRVET  104 (107)
T ss_dssp             CEEEECCCEEEEC
T ss_pred             CCcCCCCCEEEEC
Confidence            9988876555443

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-11  Score=96.14  Aligned_cols=91  Identities=24%  Similarity=0.370  Sum_probs=75.1

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc-EEEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV-WIPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +.||..+++...+.+++.|+|.+|. +++.++.+|.|+++...... +..........+.+.+|.+++.|.|+|+|.|..
T Consensus        11 P~~P~~~~~~~~~~~sv~l~W~pp~-~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A~N~~   89 (105)
T d1x3da1          11 PDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDY   89 (105)
T ss_dssp             CCCCCCCEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEECCEEESS
T ss_pred             CcCCCCCEEEEccCCEEEEEEECCC-CCcCccEEEEEEEecCCCcceeEEEecCCccEEEecCCcCCcEEEEEEEEECCC
Confidence            3466778999999999999999987 45678999999998665543 445555567899999999999999999999999


Q ss_pred             ccCCCccccceEE
Q psy7040         134 GESEPLETFSSII  146 (716)
Q Consensus       134 g~~~~s~~~~~~~  146 (716)
                      |.|.+|......+
T Consensus        90 G~s~~S~~~~~~T  102 (105)
T d1x3da1          90 GTSGFSEEVLYYT  102 (105)
T ss_dssp             CBCCCCCCEEEEC
T ss_pred             eEcCCCCcEEEEC
Confidence            9999987766554

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=5.4e-12  Score=96.08  Aligned_cols=85  Identities=15%  Similarity=0.320  Sum_probs=68.4

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC-CcEEEe--cccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWIPV--GKTREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-~~~~~~--~~~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      +++|..+++..++.+++.|+|++|...++.+|.+|+|+|+..+. ..|...  .....+++.|.||+|++.|.|+|+|.|
T Consensus         7 ~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   86 (95)
T d2ibga1           7 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFS   86 (95)
T ss_dssp             CCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEEC
T ss_pred             CCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEEEe
Confidence            34455678889999999999998876666779999999986553 344433  233458999999999999999999999


Q ss_pred             cCccCCCc
Q psy7040         132 KEGESEPL  139 (716)
Q Consensus       132 ~~g~~~~s  139 (716)
                      ..|.|++|
T Consensus        87 ~~G~s~~S   94 (95)
T d2ibga1          87 AASASEFS   94 (95)
T ss_dssp             SSCBCCCC
T ss_pred             CCccCCCC
Confidence            99998876

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.7e-12  Score=94.73  Aligned_cols=84  Identities=23%  Similarity=0.342  Sum_probs=70.1

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +++||.+|.+.+++.+++.|+|++|.    .++.+|.|.|+..++..+........+++.|.||.|++.|.|+|+|.+..
T Consensus         1 gl~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   76 (93)
T d2cuma1           1 GLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQ   76 (93)
T ss_dssp             TCCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEECTTSCEEEEEECSSCSEEEECSCCTTCEEEEEEEEEBTT
T ss_pred             CcCcCCCCEEEEeCCCEEEEEEEccc----cccccEEEEEEccccccEEEEECCCccEEEEeCccCCCEEEEEEEEEeCC
Confidence            46788899999999999999999875    34899999999876654444444556899999999999999999999999


Q ss_pred             ccCCCccc
Q psy7040         134 GESEPLET  141 (716)
Q Consensus       134 g~~~~s~~  141 (716)
                      |.+.++..
T Consensus        77 g~s~~~~~   84 (93)
T d2cuma1          77 SLLPPVST   84 (93)
T ss_dssp             BCCCCEEE
T ss_pred             CCCCCEEE
Confidence            98877643

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-11  Score=93.30  Aligned_cols=87  Identities=21%  Similarity=0.264  Sum_probs=72.3

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      |.+|.++.+...+.+++.|+|.+|... ++.+.+|.|+++..+...+...   .....++.|.+|.+++.|.|+|+|.|.
T Consensus         1 P~~P~~~~v~~~s~~si~l~W~~p~~~-~~~i~~Y~v~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~~V~A~n~   76 (93)
T d1x4xa1           1 PDQCKPPQVTCRSATCAQVNWEVPLSN-GTDVTEYRLEWGGVEGSMQICY---CGPGLSYEIKGLSPATTYYCRVQALSV   76 (93)
T ss_dssp             CCCCCCCCCEEEETTEEEEECCCCSCS-SSCCCEEEEEEESSTTSCCEEE---EESCSEEEEESCCSSCEEEEEEEEECS
T ss_pred             CcCCCCCEEEEeCCCeEEEEEEecccC-CCeeEEEEEEEccCCCcceEee---cCCccEEEEcccceeeEEEEEEEEEEC
Confidence            567788888889999999999997754 5589999999998765544433   346788999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy7040         405 GGPGEPSDPTA  415 (716)
Q Consensus       405 ~g~~~~s~~~~  415 (716)
                      .|.|.+|....
T Consensus        77 ~G~s~~S~~~~   87 (93)
T d1x4xa1          77 VGAGPFSEVVA   87 (93)
T ss_dssp             SCCCCBCCCEE
T ss_pred             CcCcCCCCcEE
Confidence            99998886543

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-11  Score=92.73  Aligned_cols=83  Identities=24%  Similarity=0.444  Sum_probs=69.8

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEec-ccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG-KTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      ++.||..|++..++.+++.|+|++|.    .++.+|+|+|+..++..+.... ......+.|.+|+|++.|.|+|+|.|.
T Consensus         1 d~spP~~l~v~~~~~~si~v~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   76 (90)
T d1fnha2           1 NVSPPRRARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLND   76 (90)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCS----SCCCCEEEEEEESSSSCCEEEECCTTCSEEEEESCCTTCEEEEEEEEEET
T ss_pred             CcCcCCCCEEEEecCCEEEEEEECCC----CCCceeEEEEEEccCCceEEEecCCCccEEEeCCCCCCcEEEEEEEEEeC
Confidence            35788999999999999999999875    3499999999987766555444 344689999999999999999999999


Q ss_pred             CccCCCcc
Q psy7040         133 EGESEPLE  140 (716)
Q Consensus       133 ~g~~~~s~  140 (716)
                      .|.+.+..
T Consensus        77 ~g~s~p~~   84 (90)
T d1fnha2          77 NARSSPVV   84 (90)
T ss_dssp             TEECCCEE
T ss_pred             CCCcCCEE
Confidence            99887654

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.2e-12  Score=96.51  Aligned_cols=92  Identities=26%  Similarity=0.315  Sum_probs=75.2

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .+|.+|.++.+...+.+++.|+|.+|...++ .+.+|.|+|+..+...+.. ........+++|.+|.+++.|.|+|+|.
T Consensus         2 a~P~~p~~~~~~~~s~~si~v~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   79 (98)
T d1x5la1           2 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSY-STLKAVTTRATVSGLKPGTRYVFQVRAR   79 (98)
T ss_dssp             CCCCCCCCEECSCBCSSCEEEEECCCSCCCS-CCCEEEEEEEESSSCCSSC-EEEEESSSEEEECSCCTTCEEEECEEEE
T ss_pred             cCCCCCCceEEEeccCCEEEEEEECCCCCCC-CEEEEEEEeecccccceee-EEecCCceEEEECCCCCCCEEEEEEEEE
Confidence            4688899999999999999999999876554 7899999998776433322 2334567899999999999999999999


Q ss_pred             eCCCCCCCCCCCCc
Q psy7040         403 NKGGPGEPSDPTAP  416 (716)
Q Consensus       403 n~~g~~~~s~~~~~  416 (716)
                      |..|.|.+|....+
T Consensus        80 n~~G~g~~S~~v~~   93 (98)
T d1x5la1          80 TSAGCGRFSQAMEV   93 (98)
T ss_dssp             ETTEECCCCCCEEE
T ss_pred             cCCCCcCCCCCEEE
Confidence            99999988875543

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4e-12  Score=101.58  Aligned_cols=101  Identities=20%  Similarity=0.327  Sum_probs=80.3

Q ss_pred             cCCCCCCC-CCCCcEEEeeeCCeEEEEecCCC-CCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEE
Q psy7040         319 KNPFNQPG-KPGTPEIKDFDTDFVELAWTPPE-QNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE  396 (716)
Q Consensus       319 ~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~p~-~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~  396 (716)
                      ++...+|. +|.++.+...+.+++.|+|.+|. ...++.|.+|+|+|+..+...+...........++.|.+|.+++.|.
T Consensus         5 ~T~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   84 (119)
T d1x5ha1           5 RTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYN   84 (119)
T ss_dssp             CCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEE
T ss_pred             EcCCCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCEEE
Confidence            33445675 78999999999999999999864 33445899999999887755555444556778899999999999999


Q ss_pred             EEEEEEeCCCCCCCCCCCCceEe
Q psy7040         397 FRVLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       397 ~~v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      |+|+|.|..|.|.+|......+.
T Consensus        85 ~~V~A~n~~G~G~~S~~~~~~T~  107 (119)
T d1x5ha1          85 FRVAALTINGTGPATDWLSAETF  107 (119)
T ss_dssp             EECEEEETTEEEEECCCEEEECC
T ss_pred             EEEEEEcCCcCCCCCCCEEEEeC
Confidence            99999999999988876555443

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8.6e-12  Score=98.39  Aligned_cols=98  Identities=27%  Similarity=0.364  Sum_probs=78.5

Q ss_pred             CCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc---eEEE--eeecCCCCeEEecCCCCCCe
Q psy7040         320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI---WEKC--AQTEGDTPKGKVLDLIEGNQ  394 (716)
Q Consensus       320 ~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~---~~~~--~~~~~~~~~~~i~~l~~~~~  394 (716)
                      .+..+|++|.++.+...+.+++.|+|.+|. ++++++.+|.|+++......   |...  .........+.+.+|.+++.
T Consensus         6 ~p~~~P~~P~~~~~~~~~~~sv~l~W~pp~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~   84 (111)
T d1wisa1           6 VPPELPGPPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTC   84 (111)
T ss_dssp             CCCCCCCCCEEEEEESCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSE
T ss_pred             CCCCCCcCCCCCEEEEcCCCEEEEEEeCCC-CCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCE
Confidence            355778999999999999999999999865 45668999999998655332   2222  22356678899999999999


Q ss_pred             EEEEEEEEeCCCCCCCCCCCCceE
Q psy7040         395 YEFRVLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       395 Y~~~v~a~n~~g~~~~s~~~~~~~  418 (716)
                      |.|+|+|.|..|.|.+|.++..+.
T Consensus        85 Y~frV~A~N~~G~s~~S~~s~~~~  108 (111)
T d1wisa1          85 YSFRMRQVNIVGTSPPSQPSRKIQ  108 (111)
T ss_dssp             ECCCCEEECSSCBCCCCCCCCCEE
T ss_pred             EEEEEEEEcCCcCCCCcCCCCCEE
Confidence            999999999999999998765443

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-11  Score=92.98  Aligned_cols=89  Identities=18%  Similarity=0.240  Sum_probs=71.2

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcE-EEecccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-IPVGKTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      ++.||.++++..++.++|.|+|++|.    +.+.+|.|+|+......+ ........+.+.|.+|.|++.|.|+|+|.|.
T Consensus         1 ~l~aP~n~~~~~~s~~si~l~W~~p~----~~~~~Y~i~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   76 (92)
T d1qg3a1           1 DLGAPQNPNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGA   76 (92)
T ss_dssp             CCCCCEEEEEEECSTTCEEEEEECCS----SCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEECS
T ss_pred             CCCcCCCCEEEEccCCEEEEEEEecC----CCccceEEeeeeccccccEEEEecCCccEEEECCCCCCcEEEEEEEEEeC
Confidence            35678889999999999999999985    238899999987664433 2223344589999999999999999999999


Q ss_pred             CccCCCccccceEE
Q psy7040         133 EGESEPLETFSSII  146 (716)
Q Consensus       133 ~g~~~~s~~~~~~~  146 (716)
                      .|.|.+|......+
T Consensus        77 ~G~g~~S~~~~~~T   90 (92)
T d1qg3a1          77 QGEGPYSSLVSCRT   90 (92)
T ss_dssp             SCBCCCCCCEEEEC
T ss_pred             CcCcCCCCCEEEEc
Confidence            99999887665443

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1e-11  Score=94.79  Aligned_cols=92  Identities=18%  Similarity=0.324  Sum_probs=71.4

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEE-EecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI-PVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~-~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +.|+..+.+...+.+++.|+|++|...+| ++.+|+|+|+..+...+. .......++++|.||.+++.|.|+|+|.|..
T Consensus         4 P~~p~~~~~~~~s~~si~v~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~   82 (98)
T d1x5la1           4 PSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSA   82 (98)
T ss_dssp             CCCCCCEECSCBCSSCEEEEECCCSCCCS-CCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEECEEEEETT
T ss_pred             CCCCCceEEEeccCCEEEEEEECCCCCCC-CEEEEEEEeecccccceeeEEecCCceEEEECCCCCCCEEEEEEEEEcCC
Confidence            34555577779999999999999875544 699999999876543322 2223345899999999999999999999999


Q ss_pred             ccCCCccccceEEe
Q psy7040         134 GESEPLETFSSIIA  147 (716)
Q Consensus       134 g~~~~s~~~~~~~~  147 (716)
                      |.|.+|......+.
T Consensus        83 G~g~~S~~v~~~T~   96 (98)
T d1x5la1          83 GCGRFSQAMEVETG   96 (98)
T ss_dssp             EECCCCCCEEEECC
T ss_pred             CCcCCCCCEEEEcC
Confidence            99988877665543

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.5e-11  Score=91.25  Aligned_cols=86  Identities=29%  Similarity=0.444  Sum_probs=79.7

Q ss_pred             ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      .+.++.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+....+.+.|.|.++...|.|.|+|.|.|..|....+
T Consensus         6 ~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   85 (101)
T d2cqva1           6 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQ   85 (101)
T ss_dssp             CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECC
T ss_pred             eCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEE
Confidence            35578899999999999999999999999999999999999999988889999999999999999999999999999888


Q ss_pred             EEEEEE
Q psy7040         512 AKVTVL  517 (716)
Q Consensus       512 ~~~~v~  517 (716)
                      +.+.|.
T Consensus        86 ~~l~V~   91 (101)
T d2cqva1          86 VNLTVV   91 (101)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            877776

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.25  E-value=3.1e-11  Score=93.58  Aligned_cols=91  Identities=18%  Similarity=0.255  Sum_probs=75.2

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCC-CCCCCccceEEEEEEeecC-CCceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPP-EQNGGSPIVGYIIEKKEKY-SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p-~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      ++.+|.++.+...+.+++.|+|.++ ....++++.+|.|.|+..+ ...|...........++.|.+|.+++.|.|+|+|
T Consensus         4 P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   83 (105)
T d1cfba2           4 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVA   83 (105)
T ss_dssp             CSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEE
T ss_pred             CCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEEE
Confidence            3457999999999999999999974 3445568999999998765 3456666656677889999999999999999999


Q ss_pred             EeCCCCCCCCCCC
Q psy7040         402 VNKGGPGEPSDPT  414 (716)
Q Consensus       402 ~n~~g~~~~s~~~  414 (716)
                      .|..|.|+++...
T Consensus        84 ~N~~G~gp~S~~~   96 (105)
T d1cfba2          84 INDRGESNVAAEE   96 (105)
T ss_dssp             EETTEECSSCCCC
T ss_pred             EeCCcCCCCCCCc
Confidence            9999999877654

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.24  E-value=1.2e-11  Score=95.06  Aligned_cols=96  Identities=27%  Similarity=0.338  Sum_probs=74.7

Q ss_pred             EecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCe-EEccccCcccceEEEcCCCCCCeEEEE
Q psy7040         219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW-TPAGETEGPVTGLEVEGLIPNHKYKFR  297 (716)
Q Consensus       219 v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~~~y~~~  297 (716)
                      |+++|.+|.+ +.+. ...+++.|+|.+|.+ ++.++.+|.|+++......| ...........++.+.+|.|++.|.|+
T Consensus         2 V~dvP~~P~~-~~v~-~~~~sv~lsW~pp~~-~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~fr   78 (100)
T d1cfba1           2 VQDVPNAPKL-TGIT-CQADKAEIHWEQQGD-NRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFR   78 (100)
T ss_dssp             CCCCCCCCEE-EEEE-ECSSEEEEEEECCCC-TTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEE
T ss_pred             cccCCCcCcC-cEEE-EcCCEEEEEEcCCcc-cccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEE
Confidence            5678999987 7765 467899999997765 56689999999987655443 333333345678899999999999999


Q ss_pred             EEEEcCCCCCCCCcccceEE
Q psy7040         298 VRAVNKQGKSEPLTTTASIE  317 (716)
Q Consensus       298 v~a~n~~g~~~~~~~~~~~~  317 (716)
                      |+|.|..|.|.++..+..++
T Consensus        79 V~A~n~~G~g~~S~~s~~vt   98 (100)
T d1cfba1          79 VIAFNKIGASPPSAHSDSCT   98 (100)
T ss_dssp             EEEEETTEECCCCCCCCCEE
T ss_pred             EEEEeCCcCCCCcCCCcCEE
Confidence            99999999998887664443

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.8e-12  Score=93.49  Aligned_cols=82  Identities=27%  Similarity=0.400  Sum_probs=67.4

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEe--cccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV--GKTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      ++||.+|++..++.+++.|+|++|.    .++.+|+|+|+......+...  .....+++.|.+|.|++.|.|+|+|.|.
T Consensus         1 ld~P~~l~v~~vt~~sv~l~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~   76 (89)
T d1fnfa3           1 LDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNG   76 (89)
T ss_dssp             CCCCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEET
T ss_pred             CccCcCCEEEEecCCEEEEEEEeCC----CEEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcC
Confidence            4688889999999999999999875    348999999987765554322  2334589999999999999999999999


Q ss_pred             CccCCCcc
Q psy7040         133 EGESEPLE  140 (716)
Q Consensus       133 ~g~~~~s~  140 (716)
                      .|.|.+..
T Consensus        77 ~g~s~p~~   84 (89)
T d1fnfa3          77 REESPLLI   84 (89)
T ss_dssp             TEECCCEE
T ss_pred             CcCcCCEE
Confidence            99887654

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.4e-11  Score=92.49  Aligned_cols=81  Identities=28%  Similarity=0.514  Sum_probs=67.1

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc--cCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +++|.+|++..++.+++.|+|++|.    .++.+|.|+|+..++..+.....  ...+++.|.||.|++.|.|+|+|.|.
T Consensus         1 ldaP~nl~v~~~~~~s~~l~W~~p~----~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~   76 (89)
T d1fnha3           1 IDAPSNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKN   76 (89)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECCS----SCCSEEEEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESS
T ss_pred             CccCcCCEEEEecCCEEEEEEeCCC----cCCceEEEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcC
Confidence            3577889999999999999999875    34999999999877766654432  23478999999999999999999999


Q ss_pred             CccCCCc
Q psy7040         133 EGESEPL  139 (716)
Q Consensus       133 ~g~~~~s  139 (716)
                      .|.|.+.
T Consensus        77 ~g~S~p~   83 (89)
T d1fnha3          77 NQKSEPL   83 (89)
T ss_dssp             SCEEEEE
T ss_pred             CCEeCCE
Confidence            9987654

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.8e-11  Score=91.27  Aligned_cols=84  Identities=24%  Similarity=0.322  Sum_probs=73.1

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEe
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  403 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n  403 (716)
                      +| +|.++.+..++.+++.|+|.+|.   +..+.+|+|+++..+...+...........++.|.+|.|++.|.|+|+|.|
T Consensus         6 vp-~P~~l~v~~~t~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~   81 (95)
T d2fnba_           6 VP-QLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLI   81 (95)
T ss_dssp             SC-CCTTCEEECCCSSCEEEECCCCC---CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEE
T ss_pred             cC-cCCCeEEEEEcCCEEEEEEEecC---CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEe
Confidence            44 68999999999999999999864   336899999999887677777777778889999999999999999999999


Q ss_pred             CCCCCCCC
Q psy7040         404 KGGPGEPS  411 (716)
Q Consensus       404 ~~g~~~~s  411 (716)
                      ..|.|.++
T Consensus        82 ~~g~s~p~   89 (95)
T d2fnba_          82 NGGESAPT   89 (95)
T ss_dssp             TTEECCCC
T ss_pred             CCcEeCCE
Confidence            99987655

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.24  E-value=1.7e-11  Score=92.65  Aligned_cols=91  Identities=31%  Similarity=0.477  Sum_probs=81.5

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +|.|.. .+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|.
T Consensus         2 ~P~i~~-~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           2 KPKILT-ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECC-CCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEe-CCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            455543 3567899999999999999999999999999999998888888888888899999999999999999999999


Q ss_pred             CCceeeEEEEEE
Q psy7040         505 WGTDKGTAKVTV  516 (716)
Q Consensus       505 ~g~~~~s~~~~v  516 (716)
                      .|..+.++.+.|
T Consensus        81 ~G~~~~~~~l~V   92 (93)
T d1wiua_          81 LGEDEAIFEVIV   92 (93)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999988888776

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.6e-11  Score=93.58  Aligned_cols=91  Identities=23%  Similarity=0.270  Sum_probs=73.7

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      |..|..+.+...+.++|.|+|.+|...+| .+.+|.++++......+.... .......+.+.+|.|++.|.|+|+|.|.
T Consensus         1 P~~~~~l~~~~~t~~si~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   78 (95)
T d2djsa1           1 PSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSM-ARSQTNTARIDGLRPGMVYVVQVRARTV   78 (95)
T ss_dssp             CCCCSCCEEEEECSSEEEEECCCCSCCSS-CEEEEEEEEEETTSCSTTCEE-EEESSSEEEEESCCTTCEEEEEEEEEES
T ss_pred             CCCCCccEEEeecCCEEEEEEEECCCCCc-ceEEeeeeeeeeccCcceeEe-ecCCccEEEEeecCCccEEEEEEEEEcC
Confidence            55677899999999999999999876554 899999999887644443322 2456788999999999999999999999


Q ss_pred             CCCCCCCCCCCce
Q psy7040         405 GGPGEPSDPTAPH  417 (716)
Q Consensus       405 ~g~~~~s~~~~~~  417 (716)
                      .|.|.+|....+.
T Consensus        79 ~G~g~~S~~~~~~   91 (95)
T d2djsa1          79 AGYGKFSGKMCFQ   91 (95)
T ss_dssp             SCEEEECCCEEEE
T ss_pred             CCCCCCCCCEEEE
Confidence            9999888765443

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.9e-11  Score=92.77  Aligned_cols=80  Identities=26%  Similarity=0.431  Sum_probs=66.8

Q ss_pred             ceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc-cCCCeEEecCCCCCcEEEEEEEEEecCccCCCc
Q psy7040          61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK-TREPEMDVTGLTPGHEYKFRVKALNKEGESEPL  139 (716)
Q Consensus        61 l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s  139 (716)
                      +.+...+.+++.|+|++|... ++++.+|.|+|+..+...|..... ...+++.|.+|.+++.|.|+|+|.|..|.|.++
T Consensus         6 ~~~~~~~~~sv~l~W~pP~~~-~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s   84 (94)
T d2dn7a1           6 MMISTTAMNTALLQWHPPKEL-PGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEF   84 (94)
T ss_dssp             EEEEECSTTEEEEEEECCSSC-SSCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEETTEEEEEE
T ss_pred             EeEEEEeCCEEEEEEeCCCCC-CCceEEEEEEEEEcCCCCcEEEEcCCCccEEEEEccCCeeEEEEEEEEEcCCcCCCCc
Confidence            456678889999999998754 456999999999888777766543 345899999999999999999999999998877


Q ss_pred             cc
Q psy7040         140 ET  141 (716)
Q Consensus       140 ~~  141 (716)
                      ..
T Consensus        85 ~~   86 (94)
T d2dn7a1          85 EK   86 (94)
T ss_dssp             EE
T ss_pred             cE
Confidence            54

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.23  E-value=1.8e-11  Score=91.21  Aligned_cols=82  Identities=22%  Similarity=0.317  Sum_probs=67.8

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      ++|.+|.+..++.+++.|+|++|.    +.+.+|+|+|+..+...+........+++.|.+|.|++.|.|+|+|.+..|.
T Consensus         1 DaP~~l~v~~~t~~sv~v~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~   76 (87)
T d1qr4a1           1 DNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHK   76 (87)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECTTCCEEEEEECTTCSEEEEESCCSSCEEEEEEEEESSSCB
T ss_pred             CcCcCcEEEEecCCEEEEEEECCC----CCcceeEEEeecCCcceeEEeCCCCcCEEEECCCCcCCEEEEEEEEEcCCCC
Confidence            356778999999999999999875    3489999999987765544444455689999999999999999999999998


Q ss_pred             CCCccc
Q psy7040         136 SEPLET  141 (716)
Q Consensus       136 ~~~s~~  141 (716)
                      |.++..
T Consensus        77 s~~~~~   82 (87)
T d1qr4a1          77 SKPTTI   82 (87)
T ss_dssp             CCCEEE
T ss_pred             ccCEEE
Confidence            877643

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.23  E-value=2.2e-11  Score=90.81  Aligned_cols=81  Identities=21%  Similarity=0.392  Sum_probs=68.5

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEec-ccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG-KTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      .+|..|++.+++.+++.|+|++|.    +++.+|.|+|+..+...+.... ....+++.|.||.|++.|.|+|.|+|..|
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~~~----~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   77 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFE   77 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECCCS----SCCSEEEEEEEETTCCCCEEEEEETTCCEEEECSCCSSCEEEEEEEEEETTE
T ss_pred             cCCcceEEEEecCCEEEEEEEccc----EeeceEEEEEEeccCCceEEEEecCCccEEEECCCCCCCEEEEEEEEEeCCC
Confidence            567789999999999999999874    3499999999987777665544 33458999999999999999999999999


Q ss_pred             cCCCcc
Q psy7040         135 ESEPLE  140 (716)
Q Consensus       135 ~~~~s~  140 (716)
                      .|.+..
T Consensus        78 ~s~p~~   83 (88)
T d1qr4a2          78 ESEPIS   83 (88)
T ss_dssp             ECCCEE
T ss_pred             CcCCEE
Confidence            887653

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.3e-11  Score=91.82  Aligned_cols=87  Identities=18%  Similarity=0.336  Sum_probs=70.2

Q ss_pred             CCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcE-EEecccCCCeEEecCCCCCcEEEEEEEEEecCccCC
Q psy7040          59 GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-IPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESE  137 (716)
Q Consensus        59 ~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~  137 (716)
                      ..+.+...+.++|.|+|++|...+| ++.+|.|+++......+ ........+.+.|.+|.|++.|.|+|+|.|..|.|.
T Consensus         5 ~~l~~~~~t~~si~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~   83 (95)
T d2djsa1           5 PIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGK   83 (95)
T ss_dssp             SCCEEEEECSSEEEEECCCCSCCSS-CEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEEEEEEEESSCEEE
T ss_pred             CccEEEeecCCEEEEEEEECCCCCc-ceEEeeeeeeeeccCcceeEeecCCccEEEEeecCCccEEEEEEEEEcCCCCCC
Confidence            3578899999999999999876554 69999999987765443 222334458999999999999999999999999998


Q ss_pred             CccccceEE
Q psy7040         138 PLETFSSII  146 (716)
Q Consensus       138 ~s~~~~~~~  146 (716)
                      +|......+
T Consensus        84 ~S~~~~~~T   92 (95)
T d2djsa1          84 FSGKMCFQT   92 (95)
T ss_dssp             ECCCEEEEC
T ss_pred             CCCCEEEEe
Confidence            887766544

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.4e-11  Score=94.15  Aligned_cols=88  Identities=19%  Similarity=0.294  Sum_probs=73.9

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC-----CceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS-----PIWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      .|++|.++.+...+.+++.|+|.+|...+ +++.+|.|+++....     ..|...........++.|.+|++++.|.|+
T Consensus         2 ~P~~P~~~~~~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   80 (103)
T d1qg3a2           2 VPSEPGRLAFNVVSSTVTQLSWAEPAETN-GEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT   80 (103)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCS-SCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEEE
T ss_pred             cCccCCCcEEEEecCCEEEEEEEECccCC-CCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEEE
Confidence            58899999999999999999999987654 489999999986542     234555555667789999999999999999


Q ss_pred             EEEEeCCCCCCCCC
Q psy7040         399 VLAVNKGGPGEPSD  412 (716)
Q Consensus       399 v~a~n~~g~~~~s~  412 (716)
                      |+|.|..|.|.++.
T Consensus        81 V~A~n~~G~g~~s~   94 (103)
T d1qg3a2          81 VKARNGAGWGPERE   94 (103)
T ss_dssp             EEEEETTEECCCEE
T ss_pred             EEEEcCCccCCCcc
Confidence            99999999987664

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.7e-11  Score=91.22  Aligned_cols=83  Identities=29%  Similarity=0.516  Sum_probs=68.9

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc--cCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +++|..|++.+++.+++.|+|++|.    .++.+|+++|+......+.....  ...+++.|.+|.|++.|.|+|.|+|.
T Consensus         2 ~d~P~~l~v~~vt~~sv~l~W~~p~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   77 (94)
T d1j8ka_           2 IDRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHD   77 (94)
T ss_dssp             CCCCCCCEEEEEETTEEEEECCCCS----SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSS
T ss_pred             CCCCCCCEEEEecCCEEEEEEeCCC----ccccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEeC
Confidence            5788899999999999999999875    24899999998877665544332  33589999999999999999999999


Q ss_pred             CccCCCccc
Q psy7040         133 EGESEPLET  141 (716)
Q Consensus       133 ~g~~~~s~~  141 (716)
                      .|.|.+...
T Consensus        78 ~g~S~p~~~   86 (94)
T d1j8ka_          78 DMESQPLIG   86 (94)
T ss_dssp             SCCCCCEEE
T ss_pred             CCCcCCEEE
Confidence            998876644

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.6e-12  Score=112.54  Aligned_cols=191  Identities=13%  Similarity=-0.007  Sum_probs=79.2

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      +.||.++.+...+.++|.|+|++|..++| .+.+|.|+|+......+..    .........+.+.+.|.+++.|.+..+
T Consensus         3 Ps~P~~~~~~~~s~~si~vsW~pP~~~ng-~i~~Y~V~~~~~~~~~~~~----~~~~~~~~~~~~~~~y~~~v~~~~~~~   77 (196)
T d2dtge2           3 PSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELF----ELDYCLKGLKLPSRTWSPPFESEDSQK   77 (196)
T ss_dssp             CCCCEEEEEEECSSSCEEEEEECCCCSSS-SCSEEECCEEEECCCCSCT----TCSSSCSCCCCCC--------------
T ss_pred             CcCCcCCEEEeccCCEEEEEEECCCCCCC-cEEEEEEEEEcCCCCCcee----EEeeEEeccccceeEEEEEEEEEcCCc
Confidence            34566678888999999999999986655 6999999987655432211    112233345678889999999998877


Q ss_pred             cCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeE
Q psy7040         135 ESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVE  214 (716)
Q Consensus       135 ~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  214 (716)
                      .+..+............                                                               
T Consensus        78 ~~~~~~~~~~~~~~~~~---------------------------------------------------------------   94 (196)
T d2dtge2          78 HNQSEYEDSAGECCSCP---------------------------------------------------------------   94 (196)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCcCCccceecCCCC---------------------------------------------------------------
Confidence            55443222211110000                                                               


Q ss_pred             EEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeE
Q psy7040         215 VEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKY  294 (716)
Q Consensus       215 ~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y  294 (716)
                        ......+..+.. +.+.......+.+.|..+..... ....|.+.........+  .........++.|.+|.|++.|
T Consensus        95 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~L~p~t~Y  168 (196)
T d2dtge2          95 --KTDSQILKELEE-SSFRKTFEDYLHNVVFVPRPSRK-RRSLGDVGNAGNNEEHR--PFEKVVNKESLVISGLRHFTGY  168 (196)
T ss_dssp             -----------------------------------------------------CCS--CSCEECSCSEEEECSSCSSCEE
T ss_pred             --ccccccccCCcC-cEEEeccCCceeecccCcCCCcc-ceEEEEEEeecCCCccE--EEEeccceEEEEECCCCCCCEE
Confidence              000011112222 34445555667777775432211 11222222221111111  1122345689999999999999


Q ss_pred             EEEEEEEcCCCCCCCCcccceEEec
Q psy7040         295 KFRVRAVNKQGKSEPLTTTASIEAK  319 (716)
Q Consensus       295 ~~~v~a~n~~g~~~~~~~~~~~~~~  319 (716)
                      .|+|+|.|..|.+..++.+..+..+
T Consensus       169 ~~~V~A~n~~~~~~~~s~s~~~~~r  193 (196)
T d2dtge2         169 RIELQACNQDTPEERCSVAAYVSAR  193 (196)
T ss_dssp             EECCEEESCSSSSCCBCCCCCEEEE
T ss_pred             EEEEEEEECCCCCCCccCcceEEee
Confidence            9999999999998887776666655

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.22  E-value=8.7e-11  Score=90.40  Aligned_cols=92  Identities=29%  Similarity=0.443  Sum_probs=80.0

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +|.+. ..+.++.+..|..+.|.|.+.+.|.+.+.|++++..+..+.++.+... .....|.|.++...|.|.|+|.|.|
T Consensus         8 ~P~f~-~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           8 KPYFT-KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEE-cCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            44443 345678899999999999999999999999999999998888887664 4577899999999999999999999


Q ss_pred             CCCceeeEEEEEEE
Q psy7040         504 SWGTDKGTAKVTVL  517 (716)
Q Consensus       504 ~~g~~~~s~~~~v~  517 (716)
                      ..|....++.+.|.
T Consensus        87 ~~G~~~~~~~L~V~  100 (102)
T d1fhga_          87 SLGEATCTAELLVE  100 (102)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99999888888765

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.4e-11  Score=95.14  Aligned_cols=83  Identities=17%  Similarity=0.276  Sum_probs=69.1

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .+|..|.+..++.+++.|+|++|.    +++.+|+|+|+..++..+........++++|.||.|++.|.|+|+|.+..|.
T Consensus         2 ~~P~~l~~~~~t~~si~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~~~   77 (102)
T d2cuha1           2 DGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNL   77 (102)
T ss_dssp             SSCEEEECCCCSSSCEEEEEECCS----SCCSEEEEEEECSSSCCEEEEEETTCSEEEECSCCSSSEEEEEEEEEETTEE
T ss_pred             cCCCccEEEEeCCCEEEEEEEeee----ccceeeEEEEEeccccceeeeeeeeeeeEEEccEEeeEEEEEEEEEEeCCCC
Confidence            345667788999999999999875    3489999999987776666655566689999999999999999999999998


Q ss_pred             CCCcccc
Q psy7040         136 SEPLETF  142 (716)
Q Consensus       136 ~~~s~~~  142 (716)
                      +.++...
T Consensus        78 s~~~~~~   84 (102)
T d2cuha1          78 TSPASIT   84 (102)
T ss_dssp             CCCEEEE
T ss_pred             cCCEEEE
Confidence            8876544

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=3.5e-11  Score=93.34  Aligned_cols=94  Identities=12%  Similarity=0.120  Sum_probs=73.2

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeec-CCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK-YSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      ..|..+.+.....++|.|+|.+|... ++.+.+|.|+|+.. +...|...........++.|.+|.+++.|.|+|+|.+.
T Consensus         9 ~~P~~p~~~~~~~~~i~v~W~pp~~~-~~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~   87 (106)
T d1cd9b2           9 ALDIGPDVVSHQPGCLWLSWKPWKPS-EYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRS   87 (106)
T ss_dssp             ECCC-------CCSCEEEEEECCGGG-TTSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEES
T ss_pred             CCCCCCeEecCCCCEEEEEEcCcccC-CccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEeC
Confidence            45666778888899999999997655 44688999999864 45678887777777889999999999999999999999


Q ss_pred             CCCCCCCCCCCceEee
Q psy7040         405 GGPGEPSDPTAPHIAR  420 (716)
Q Consensus       405 ~g~~~~s~~~~~~~~~  420 (716)
                      .|.|.+|+.+..+...
T Consensus        88 ~g~g~wS~wS~~~~~~  103 (106)
T d1cd9b2          88 SLPGFWSPWSPGLQLR  103 (106)
T ss_dssp             SSCCCCCCCCCCEEEC
T ss_pred             CCCCCCcCCCCCeEec
Confidence            9999999988776654

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.1e-11  Score=92.98  Aligned_cols=94  Identities=15%  Similarity=0.181  Sum_probs=72.0

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC-CCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      ..|..+.+.....+++.|+|.+|...++ .+.+|.|+|+... ...|...........++.|.+|.+++.|.|+|+|.|.
T Consensus         8 ~~P~~p~~~~~~~~~v~l~W~pp~~~~~-~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~   86 (105)
T d2d9qb2           8 TMDPSPEAAPPQAGCLQLSWEPWQPGLH-INQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRW   86 (105)
T ss_dssp             ECCC-------CCSCEEEEEECCGGGTT-SCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEEC
T ss_pred             CCCCCCEeecCCCCeEEEEEcCCCCCCc-eeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEEeC
Confidence            4566778888889999999999775544 6889999998654 4567766666777889999999999999999999999


Q ss_pred             CCCCCCCCCCCceEee
Q psy7040         405 GGPGEPSDPTAPHIAR  420 (716)
Q Consensus       405 ~g~~~~s~~~~~~~~~  420 (716)
                      .|.|.+|+.+..+...
T Consensus        87 ~g~G~~S~wS~~~~~~  102 (105)
T d2d9qb2          87 PLPGHWSDWSPSLELR  102 (105)
T ss_dssp             SSCCCCCCCCCCEEEC
T ss_pred             CCCCCCcCCCCCEEEe
Confidence            9999999887666543

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.21  E-value=7.9e-11  Score=89.84  Aligned_cols=92  Identities=27%  Similarity=0.378  Sum_probs=78.1

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEE-EeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +|.|.. .+.+..+..|+.+.|.|.+.+.|.+.+.|++++..+..+.+..+ ...++...|.|.++...|.|.|+|.|.|
T Consensus         4 aP~f~~-~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           4 APKIFE-RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCeEec-CCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            455543 34678899999999999999999999999999999987776554 4456678999999999999999999999


Q ss_pred             CCCceeeEEEEEEE
Q psy7040         504 SWGTDKGTAKVTVL  517 (716)
Q Consensus       504 ~~g~~~~s~~~~v~  517 (716)
                      ..|....++.+.|.
T Consensus        83 ~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          83 IAGETSSHAFLLVQ   96 (98)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99998888877764

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=7.7e-12  Score=96.66  Aligned_cols=87  Identities=18%  Similarity=0.283  Sum_probs=70.5

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccC
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGES  136 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~  136 (716)
                      ||.++++...+.+++.|+|++|.  + .++.+|.|+|+..+...+........+++.|.||+|++.|.|+|+|.|..|.|
T Consensus        13 ~P~~~~~~~~~~~si~l~W~~p~--~-~~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g   89 (102)
T d1x5za1          13 QPLNFKAEPESETSILLSWTPPR--S-DTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLG   89 (102)
T ss_dssp             CCEEEEEECSSSSEEEEEEECCS--C-CCCCEEEECBEESSSCCCBCCEECSSSEEEEECCCTTCEEEECEEEECSSCEE
T ss_pred             CCCCeEEEEccCCEEEEEEECCC--C-CCccceEEEEEeCCCCceEEEEcCCcCEEEECCCCCCCEEEEEEEEEcCCCEe
Confidence            44557777888999999999985  2 35999999999877666655555556899999999999999999999999998


Q ss_pred             CCccccceEE
Q psy7040         137 EPLETFSSII  146 (716)
Q Consensus       137 ~~s~~~~~~~  146 (716)
                      .++......+
T Consensus        90 ~~S~~v~~~T   99 (102)
T d1x5za1          90 ASTAEISART   99 (102)
T ss_dssp             EECCCEEEEC
T ss_pred             CCCCCEEEEc
Confidence            8877655544

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=6e-11  Score=91.77  Aligned_cols=89  Identities=20%  Similarity=0.230  Sum_probs=71.1

Q ss_pred             CCCCCCceEE----EEeCCeEEEEecCCCC---CCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEE
Q psy7040          55 LDPEGPLEVS----NIHKDGCTLKWNKPKD---DGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRV  127 (716)
Q Consensus        55 ~~p~~~l~~~----~~~~~s~~l~W~~p~~---~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v  127 (716)
                      +.||.+|.+.    ....++|.|+|++|..   +++..+..|+|+|+..+...|........+.+.|.+|.+++.|.|+|
T Consensus         3 P~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV   82 (103)
T d1f6fb2           3 PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTGHQTQFKVFDLYPGQKYLVQT   82 (103)
T ss_dssp             CCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEEETCSEEEECCCCTTCEEEEEE
T ss_pred             CCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeecccceeEEEeCCCCcceEEEEEE
Confidence            4566666654    4566789999999853   23445789999999999998988777777999999999999999999


Q ss_pred             EEEecCcc-CCCccccc
Q psy7040         128 KALNKEGE-SEPLETFS  143 (716)
Q Consensus       128 ~a~~~~g~-~~~s~~~~  143 (716)
                      +|.+..|. |++|....
T Consensus        83 ra~~~~G~wS~wS~~~~   99 (103)
T d1f6fb2          83 RCKPDHGYWSRWSQESS   99 (103)
T ss_dssp             EEEESSSCCCCCCCCEE
T ss_pred             EEEeCCCCCCCCcCcee
Confidence            99999984 77776654

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=3.1e-11  Score=94.02  Aligned_cols=92  Identities=26%  Similarity=0.460  Sum_probs=68.1

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC-CCceEEEeee-----------cCCCCeEEecCCCCCCe
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-SPIWEKCAQT-----------EGDTPKGKVLDLIEGNQ  394 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~-----------~~~~~~~~i~~l~~~~~  394 (716)
                      +|..+.+..++.+++.|+|.+|. ++|++|.+|.|+++..+ ...|......           ......++|.+|.+++.
T Consensus         2 PP~~p~v~~~~~~sv~l~W~~P~-~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   80 (107)
T d2ic2a1           2 PPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHT   80 (107)
T ss_dssp             CCCCCEEEECC---EEEEEEEEC-CSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEE
T ss_pred             cCcCCEEEEEECCEEEEEEEeCc-cccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcE
Confidence            35566788889999999999986 46779999999998654 3445443221           23346799999999999


Q ss_pred             EEEEEEEEeCCCCCCCCCCCCceEe
Q psy7040         395 YEFRVLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       395 Y~~~v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      |.|+|+|.|..|.|.+|..+..+..
T Consensus        81 Y~frV~A~N~~G~s~~S~~s~~~~~  105 (107)
T d2ic2a1          81 YRFRILAVYSNNDNKESNTSAKFYL  105 (107)
T ss_dssp             EEEEEEEEETTSCEEECCCCCCEEE
T ss_pred             EEEEEEEEcCCCCCCCCCCCCCEEc
Confidence            9999999999999998887765543

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.6e-11  Score=94.36  Aligned_cols=86  Identities=24%  Similarity=0.358  Sum_probs=68.5

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc-E-EEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV-W-IPVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~-~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      .|+.++++..++.+++.|+|++|...+| .+.+|+|+|+..+... + .........++.|.+|.|++.|.|+|+|.|..
T Consensus        12 ~~p~~l~~~~~~~~sv~l~W~~P~~~ng-~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   90 (106)
T d1wfna1          12 GPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSK   90 (106)
T ss_dssp             CCCSCCEEESCCSSEEEEECCCCTTCCS-CCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEEECSS
T ss_pred             cCCCCcEEEEecCCEEEEEEECCCCCCC-cEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEEEEEEEECCC
Confidence            4566788889999999999999886555 5999999998766433 2 22223335799999999999999999999999


Q ss_pred             ccCCCcccc
Q psy7040         134 GESEPLETF  142 (716)
Q Consensus       134 g~~~~s~~~  142 (716)
                      |.+.++...
T Consensus        91 G~g~~s~~~   99 (106)
T d1wfna1          91 GQGQVSAST   99 (106)
T ss_dssp             CEEEEEEEE
T ss_pred             CCcCCcCCE
Confidence            988877543

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.9e-11  Score=96.34  Aligned_cols=88  Identities=30%  Similarity=0.461  Sum_probs=67.7

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc---EEE----ecccCCCeEEecCCCCCcEEEEEEEE
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV---WIP----VGKTREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~---~~~----~~~~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      ||..+++..++.+++.|+|++|. +++.++.+|.|+++......   |..    ......+++.|.+|.|++.|.|+|+|
T Consensus        13 ~P~~~~~~~~~~~sv~l~W~pp~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   91 (111)
T d1wisa1          13 PPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQ   91 (111)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECCCCEE
T ss_pred             CCCCCEEEEcCCCEEEEEEeCCC-CCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEEEEEEEE
Confidence            34457777888999999999886 46678999999997654332   221    12233478999999999999999999


Q ss_pred             EecCccCCCccccceE
Q psy7040         130 LNKEGESEPLETFSSI  145 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~  145 (716)
                      .|..|.|.+|.....+
T Consensus        92 ~N~~G~s~~S~~s~~~  107 (111)
T d1wisa1          92 VNIVGTSPPSQPSRKI  107 (111)
T ss_dssp             ECSSCBCCCCCCCCCE
T ss_pred             EcCCcCCCCcCCCCCE
Confidence            9999999988765543

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.1e-11  Score=94.64  Aligned_cols=89  Identities=21%  Similarity=0.333  Sum_probs=70.4

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcE---EEecccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW---IPVGKTREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~---~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      +.||..+.+...+.+++.|+|++|..++| ++.+|.|+|+..+...+   ........+++.|.+|+|++.|.|+|+|.|
T Consensus        21 P~~P~~~~~~~~~~~sv~v~W~~P~~~~g-~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   99 (117)
T d1wfoa1          21 PGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQT   99 (117)
T ss_dssp             CCCCCCCEEEEECSSEEEEECCCCSCCCS-CCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSSEEEEEEEEEC
T ss_pred             CcCCCCcEEEEecCCEEEEEEECCCCCCC-ceEEEeeeeeeccCCCceEeEEecCCceEEEEECCCCCCCEEEEEEEEEC
Confidence            35667788999999999999999886554 69999999976654332   223334458999999999999999999999


Q ss_pred             cCccCCCccccce
Q psy7040         132 KEGESEPLETFSS  144 (716)
Q Consensus       132 ~~g~~~~s~~~~~  144 (716)
                      ..|.|.++.....
T Consensus       100 ~~G~g~~S~~~~~  112 (117)
T d1wfoa1         100 RKGWGEAAEALVV  112 (117)
T ss_dssp             SSCEEEEEEEEEE
T ss_pred             CCcCCCCcCCEEE
Confidence            9998888765443

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.3e-11  Score=95.35  Aligned_cols=91  Identities=20%  Similarity=0.280  Sum_probs=73.6

Q ss_pred             CCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEE
Q psy7040         320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV  399 (716)
Q Consensus       320 ~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v  399 (716)
                      +....|++|.++.+...+.+++.|+|.+|..   +.+.+|.|+|+..+...+....  .....++.|.+|.|++.|.|+|
T Consensus         6 T~~~vP~~P~~~~~~~~~~~si~l~W~~p~~---~~i~~Y~i~y~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V   80 (102)
T d1x5za1           6 TQTGVPGQPLNFKAEPESETSILLSWTPPRS---DTIANYELVYKDGEHGEEQRIT--IEPGTSYRLQGLKPNSLYYFRL   80 (102)
T ss_dssp             CCSCCCCCCEEEEEECSSSSEEEEEEECCSC---CCCCEEEECBEESSSCCCBCCE--ECSSSEEEEECCCTTCEEEECE
T ss_pred             CCCCCCcCCCCeEEEEccCCEEEEEEECCCC---CCccceEEEEEeCCCCceEEEE--cCCcCEEEECCCCCCCEEEEEE
Confidence            3457889999999999999999999999742   2689999999987654443332  2355789999999999999999


Q ss_pred             EEEeCCCCCCCCCCCC
Q psy7040         400 LAVNKGGPGEPSDPTA  415 (716)
Q Consensus       400 ~a~n~~g~~~~s~~~~  415 (716)
                      +|.|..|.|.++....
T Consensus        81 ~A~n~~G~g~~S~~v~   96 (102)
T d1x5za1          81 AARSPQGLGASTAEIS   96 (102)
T ss_dssp             EEECSSCEEEECCCEE
T ss_pred             EEEcCCCEeCCCCCEE
Confidence            9999999988776543

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.7e-11  Score=91.02  Aligned_cols=82  Identities=18%  Similarity=0.334  Sum_probs=67.0

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc-EEEec-ccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV-WIPVG-KTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      ++||.+|.+..++.+++.|+|++|.    +++.+|+|+|...++.. +.... ....++++|.||.|++.|.|+|+|.|.
T Consensus         2 ld~P~~l~v~~~s~~s~~l~W~~p~----~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   77 (90)
T d1tena_           2 LDAPSQIEVKDVTDTTALITWFKPL----AEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRG   77 (90)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCCcEEEEecCCEEEEEEEeCc----eEeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEeC
Confidence            5788889999999999999999875    34899999998766433 33322 344589999999999999999999999


Q ss_pred             CccCCCcc
Q psy7040         133 EGESEPLE  140 (716)
Q Consensus       133 ~g~~~~s~  140 (716)
                      .|.+.++.
T Consensus        78 ~g~s~~~~   85 (90)
T d1tena_          78 DMSSNPAK   85 (90)
T ss_dssp             TEECCCEE
T ss_pred             CCEeCCEE
Confidence            99887654

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.7e-10  Score=89.20  Aligned_cols=93  Identities=14%  Similarity=0.217  Sum_probs=77.0

Q ss_pred             CCCCCCcEEEeee--CCeEEEEecCCCC-CCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         325 PGKPGTPEIKDFD--TDFVELAWTPPEQ-NGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       325 p~~p~~~~~~~~~--~~~i~l~W~~p~~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      |.+|.++.+..+.  .+.+.|+|++|.. +.+..+..|.|+++..+...|..... ......+.|.+|.+++.|.|+|+|
T Consensus         2 P~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~rVra   80 (104)
T d1n26a3           2 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMV-KDLQHHCVIHDAWSGLRHVVQLRA   80 (104)
T ss_dssp             CCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEEC-GGGCSEEEESSCCTTCCEEEEEEE
T ss_pred             CcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeecc-ccceEEEEECCCCCCCEEEEEEEE
Confidence            7889999888764  4679999999753 45667899999999888777876553 456789999999999999999999


Q ss_pred             EeCCCCCCCCCCCCceE
Q psy7040         402 VNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~~  418 (716)
                      .|..|.|.+|+.+..+.
T Consensus        81 ~n~~g~g~wSewS~~~~   97 (104)
T d1n26a3          81 QEEFGQGEWSEWSPEAM   97 (104)
T ss_dssp             EETTTBSCCCCCCCCEE
T ss_pred             EeCCCccCCcCCcCCEE
Confidence            99999999998765543

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=5.5e-11  Score=89.93  Aligned_cols=82  Identities=21%  Similarity=0.295  Sum_probs=65.9

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEec----ccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG----KTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~----~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      +++|.+|++..++.+++.|+|++|.    .++.+|.|+|+...+..+....    ....+++.|.+|.|++.|.|+|+|.
T Consensus         1 ldaP~~l~v~~~~~~sv~v~W~~p~----~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   76 (92)
T d1tdqa2           1 IDAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAV   76 (92)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEE
T ss_pred             CccCcCCEEEEecCCEEEEEEEecC----CcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEE
Confidence            3567789999999999999999875    3489999999876654433222    2234689999999999999999999


Q ss_pred             ecCccCCCcc
Q psy7040         131 NKEGESEPLE  140 (716)
Q Consensus       131 ~~~g~~~~s~  140 (716)
                      +..|.|.++.
T Consensus        77 ~~~g~s~p~~   86 (92)
T d1tdqa2          77 MNSKQSIPAT   86 (92)
T ss_dssp             ETTEECCCEE
T ss_pred             eCCCEecCEE
Confidence            9999988764

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.17  E-value=8.1e-11  Score=87.61  Aligned_cols=87  Identities=24%  Similarity=0.361  Sum_probs=71.5

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +|.+.......+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++.+..    ..|.|.++...|.|.|+|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTD----SGLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEET----TEEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEee----eeEEECCCChhhCEEEEEEEEEC
Confidence            3455444445678899999999999999999999999999998543 444432    26999999999999999999999


Q ss_pred             CCceeeEEEEEE
Q psy7040         505 WGTDKGTAKVTV  516 (716)
Q Consensus       505 ~g~~~~s~~~~v  516 (716)
                      .|.....+.+.|
T Consensus        77 ~G~~~~~~~l~V   88 (89)
T d1biha4          77 HGDKYFETLVQV   88 (89)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999888877765

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.7e-11  Score=90.51  Aligned_cols=82  Identities=26%  Similarity=0.388  Sum_probs=65.6

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEe--cccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV--GKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +||.+|++..++.+++.|+|++|.   +.++.+|.|+|+..++..+...  .....+++.|.||+|++.|.|+|+|.+..
T Consensus         2 PpP~~l~~~~~~~~sv~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   78 (91)
T d1fnfa2           2 PPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQ   78 (91)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECCT---TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred             ccCCceEEEEeCCCEEEEEEEecC---CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCC
Confidence            577788899999999999999874   2458999999987665443222  23345899999999999999999999999


Q ss_pred             ccCCCcc
Q psy7040         134 GESEPLE  140 (716)
Q Consensus       134 g~~~~s~  140 (716)
                      |.|.+..
T Consensus        79 g~S~p~~   85 (91)
T d1fnfa2          79 HESTPLR   85 (91)
T ss_dssp             EECCCEE
T ss_pred             CCCCCEE
Confidence            9887553

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1e-10  Score=90.52  Aligned_cols=87  Identities=20%  Similarity=0.282  Sum_probs=68.6

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC-----CcEEEe--cccCCCeEEecCCCCCcEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-----GVWIPV--GKTREPEMDVTGLTPGHEYKFRV  127 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~-----~~~~~~--~~~~~~~~~i~~L~~~~~y~~~v  127 (716)
                      +.+|.++.+...+.+++.|+|++|... ++++.+|.|+|+....     ..|...  ......++.|.+|++++.|.|+|
T Consensus         3 P~~P~~~~~~~~~~~sv~v~W~~P~~~-~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   81 (103)
T d1qg3a2           3 PSEPGRLAFNVVSSTVTQLSWAEPAET-NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTV   81 (103)
T ss_dssp             CCCCCCCEEEEEETTEEEEECCCCSCC-SSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEEEE
T ss_pred             CccCCCcEEEEecCCEEEEEEEECccC-CCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEEEE
Confidence            356778999999999999999998854 4579999999975442     223332  23334789999999999999999


Q ss_pred             EEEecCccCCCcccc
Q psy7040         128 KALNKEGESEPLETF  142 (716)
Q Consensus       128 ~a~~~~g~~~~s~~~  142 (716)
                      +|.|..|.|.++...
T Consensus        82 ~A~n~~G~g~~s~~~   96 (103)
T d1qg3a2          82 KARNGAGWGPEREAI   96 (103)
T ss_dssp             EEEETTEECCCEEEE
T ss_pred             EEEcCCccCCCcccc
Confidence            999999999877544

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.16  E-value=1e-10  Score=86.91  Aligned_cols=80  Identities=23%  Similarity=0.344  Sum_probs=61.4

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCc-
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG-  134 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g-  134 (716)
                      .+|.+|.+..++.+++.|+|++|.++  ..+.+|+|++..   ..   ......+++++.+|.|++.|.|+|+|.|..| 
T Consensus         5 ~~P~~l~~~~~~~~sv~lsW~~p~~~--~~i~~Y~i~~~~---~~---~~~~~~t~~~~~~L~p~t~Y~~~V~A~n~~G~   76 (88)
T d1k85a_           5 TAPTNLASTAQTTSSITLSWTASTDN--VGVTGYDVYNGT---AL---ATTVTGTTATISGLAADTSYTFTVKAKDAAGN   76 (88)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCSCC--SSEEEEEEEESS---SE---EEEESSSEEEECCCCSSCEEEEEEEEEETTTE
T ss_pred             CCCCCcEEEEecCCEEEEEEeCCCCC--CCEEEEEEEccc---eE---EEecCCCEEEECCCCCCCEEEEEEEEEECCCC
Confidence            34555778889999999999988743  348999997642   12   2233458999999999999999999999999 


Q ss_pred             cCCCccccc
Q psy7040         135 ESEPLETFS  143 (716)
Q Consensus       135 ~~~~s~~~~  143 (716)
                      .+.+|....
T Consensus        77 ~s~~S~~v~   85 (88)
T d1k85a_          77 VSAASNAVS   85 (88)
T ss_dssp             ECCCCCCEE
T ss_pred             cCCCCcCEE
Confidence            577775543

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.1e-11  Score=88.40  Aligned_cols=83  Identities=20%  Similarity=0.271  Sum_probs=66.9

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEE--EecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI--PVGKTREPEMDVTGLTPGHEYKFRVKALNKE  133 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~--~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~  133 (716)
                      +||.+|.+.+++.+++.|+|++|.    ..+.+|.|+|.......+.  .......++++|.+|.|++.|.|+|+|.|..
T Consensus         1 PpP~~l~~~~v~~~si~l~W~~p~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~   76 (90)
T d1fnha1           1 PAPTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDT   76 (90)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCCCEEEEEecCCEEEEEEEccc----eeccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCC
Confidence            467789999999999999999875    3488999998776544332  2233445899999999999999999999999


Q ss_pred             ccCCCcccc
Q psy7040         134 GESEPLETF  142 (716)
Q Consensus       134 g~~~~s~~~  142 (716)
                      |.|.++...
T Consensus        77 g~s~~~~~~   85 (90)
T d1fnha1          77 LTSRPAQGV   85 (90)
T ss_dssp             EECCCEEEE
T ss_pred             CCcCCEeEE
Confidence            999877543

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.16  E-value=4.9e-11  Score=90.80  Aligned_cols=85  Identities=24%  Similarity=0.327  Sum_probs=76.9

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +.++.+..|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..|....++
T Consensus         8 p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   87 (97)
T d1koaa1           8 PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV   87 (97)
T ss_dssp             CCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEE
Confidence            44678999999999999999999999999999999888888888888888999999999999999999999999888777


Q ss_pred             EEEEE
Q psy7040         513 KVTVL  517 (716)
Q Consensus       513 ~~~v~  517 (716)
                      .+.|.
T Consensus        88 ~l~V~   92 (97)
T d1koaa1          88 FLNVT   92 (97)
T ss_dssp             CCEEE
T ss_pred             EEEEe
Confidence            66654

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=2.5e-11  Score=96.95  Aligned_cols=94  Identities=16%  Similarity=0.131  Sum_probs=72.8

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEee----cCCCceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKE----KYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      .+|.+|.++.+..++.++|.|+|++|..+++..+.+|.|+|+.    .....|....  ....++++|.+|++++.|.|+
T Consensus        14 ~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~--~~~~~~~~v~~L~p~t~Y~fr   91 (120)
T d1wfua_          14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY--TGYATRHVVEGLEPRTLYKFR   91 (120)
T ss_dssp             CCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEE--EESCSEEEEESCCTTCEEEEE
T ss_pred             cCCCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeec--cccccEEeCCCCCCCcEeeEE
Confidence            4567778888888899999999999887777677777666653    3334455443  345688999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceE
Q psy7040         399 VLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~~  418 (716)
                      |+|.|..|.|.+|......+
T Consensus        92 V~A~n~~G~s~~S~~~~~~T  111 (120)
T d1wfua_          92 LKVTSPSGEYEYSPVVSVAT  111 (120)
T ss_dssp             EEEECSSSCEEECCCEEEEC
T ss_pred             EEEEeCCcEeCCCCCEEEEe
Confidence            99999999998886554443

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.16  E-value=1.6e-10  Score=85.89  Aligned_cols=81  Identities=26%  Similarity=0.475  Sum_probs=72.2

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +.++.+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+..    ..|.|.++...|.|.|+|.|.|..|....++
T Consensus         8 ~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   83 (89)
T d1cs6a4           8 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHGTVYASA   83 (89)
T ss_dssp             CCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEET----TEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeee----eeEEEEeecccCCEEEEEEEEeCCCEEEEEE
Confidence            557889999999999999999999999999999998888777643    3799999999999999999999999988887


Q ss_pred             EEEEE
Q psy7040         513 KVTVL  517 (716)
Q Consensus       513 ~~~v~  517 (716)
                      .+.|.
T Consensus        84 ~l~V~   88 (89)
T d1cs6a4          84 ELTVQ   88 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77764

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.5e-10  Score=89.61  Aligned_cols=92  Identities=11%  Similarity=0.112  Sum_probs=72.7

Q ss_pred             CCCCCCceEEEEe--CCeEEEEecCCCC-CCCCccceEEEEEEcCCCCcEEEecc-cCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIH--KDGCTLKWNKPKD-DGGEPLEGYLVEKYDPETGVWIPVGK-TREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~~--~~s~~l~W~~p~~-~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      ++||.+|.+..+.  .+.|.|+|++|.. +.+..+..|+|+|+..+...|..... ...+.+.|.+|.+++.|.|+|+|.
T Consensus         2 P~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~   81 (104)
T d1n26a3           2 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQ   81 (104)
T ss_dssp             CCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGGGCSEEEESSCCTTCCEEEEEEEE
T ss_pred             CcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeeccccceEEEEECCCCCCCEEEEEEEEE
Confidence            4567777777664  4689999999864 34566899999999888888876553 335799999999999999999999


Q ss_pred             ecCccCCCccccceEE
Q psy7040         131 NKEGESEPLETFSSII  146 (716)
Q Consensus       131 ~~~g~~~~s~~~~~~~  146 (716)
                      |..|.|.+|.....+.
T Consensus        82 n~~g~g~wSewS~~~~   97 (104)
T d1n26a3          82 EEFGQGEWSEWSPEAM   97 (104)
T ss_dssp             ETTTBSCCCCCCCCEE
T ss_pred             eCCCccCCcCCcCCEE
Confidence            9999888776554433

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.7e-11  Score=87.88  Aligned_cols=81  Identities=16%  Similarity=0.281  Sum_probs=69.9

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  405 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~  405 (716)
                      .+|.++.+..++.+++.|+|.+|..    .+.+|+|+|+..+...+......+....++.|.+|.|++.|.|+|+|.|..
T Consensus         2 d~P~~l~v~~vt~~sv~l~W~~p~~----~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   77 (89)
T d1fnfa3           2 DSPTGIDFSDITANSFTVHWIAPRA----TITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGR   77 (89)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECCSS----CCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETT
T ss_pred             ccCcCCEEEEecCCEEEEEEEeCCC----EEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcCC
Confidence            3688999999999999999998642    588999999987766666666667888999999999999999999999999


Q ss_pred             CCCCC
Q psy7040         406 GPGEP  410 (716)
Q Consensus       406 g~~~~  410 (716)
                      |.|++
T Consensus        78 g~s~p   82 (89)
T d1fnfa3          78 EESPL   82 (89)
T ss_dssp             EECCC
T ss_pred             cCcCC
Confidence            87754

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.7e-10  Score=86.63  Aligned_cols=81  Identities=19%  Similarity=0.292  Sum_probs=65.1

Q ss_pred             CCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEE-Ee-cccCCCeEEecCCCCCcEEEEEEEEEecCccC
Q psy7040          59 GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI-PV-GKTREPEMDVTGLTPGHEYKFRVKALNKEGES  136 (716)
Q Consensus        59 ~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~-~~-~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~  136 (716)
                      ++|++..++.+++.|+|++|.    +++.+|.|+|...++..+. .. .....+++.|.||.|++.|.|+|.|.+..|.+
T Consensus         1 rnl~v~~~t~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s   76 (91)
T d1fnaa_           1 RDLEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDS   76 (91)
T ss_dssp             CCCEEEEECSSCEEEECCCCS----SCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCS
T ss_pred             CCCEEEEeCCCEEEEEEEccc----eEecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCccC
Confidence            468999999999999999875    3489999999876654442 22 23445899999999999999999999999988


Q ss_pred             CCccccc
Q psy7040         137 EPLETFS  143 (716)
Q Consensus       137 ~~s~~~~  143 (716)
                      .++....
T Consensus        77 ~~~s~~v   83 (91)
T d1fnaa_          77 PASSKPI   83 (91)
T ss_dssp             SCSCCCE
T ss_pred             CCcCCCE
Confidence            7765433

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.2e-11  Score=93.37  Aligned_cols=91  Identities=27%  Similarity=0.408  Sum_probs=70.2

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEec---ccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG---KTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~---~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      ++.||..+.+ ..+.++|.|+|++|... +.++.+|.|+|+..+. .|..+.   ....+++.|.+|.+++.|.|+|+|.
T Consensus         7 ~~sPP~~~~~-~~t~~si~l~W~pp~~~-~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~   83 (108)
T d1v5ja_           7 GLSPPRGLVA-VRTPRGVLLHWDPPELV-PKRLDGYVLEGRQGSQ-GWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAF   83 (108)
T ss_dssp             CCCCCEEEEE-EECSSSEEEEEECCSCC-SSCCCBEEEEEEETTC-CCEEEEEEECSSCCEEECCCCCTTSCEECCBEEE
T ss_pred             CCCcCCCeEE-EEcCCEEEEEEEecccC-CCceeEEEEEeeeeee-eeeeccccccceeeeEEEEeccCCcEEEEEEEEE
Confidence            4567777766 45788999999998754 4569999999987654 343322   2335789999999999999999999


Q ss_pred             ecCccCCCccccceEEe
Q psy7040         131 NKEGESEPLETFSSIIA  147 (716)
Q Consensus       131 ~~~g~~~~s~~~~~~~~  147 (716)
                      |..|.+.++......+.
T Consensus        84 n~~g~s~~S~~~~~~T~  100 (108)
T d1v5ja_          84 AGSFVSDPSNTANVSTS  100 (108)
T ss_dssp             ETTEEEEECSCCCCCCS
T ss_pred             eCCCEeCCcCceEEECC
Confidence            99999998876655443

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.9e-10  Score=85.31  Aligned_cols=81  Identities=19%  Similarity=0.207  Sum_probs=69.4

Q ss_pred             CCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040         329 GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  408 (716)
Q Consensus       329 ~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~  408 (716)
                      +||++..++.+++.|+|.+|..    .+.+|.|+|...+...+......+....++.|.+|.|++.|.|+|.|.+..|.+
T Consensus         1 rnl~v~~~t~~sv~l~W~~p~~----~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s   76 (91)
T d1fnaa_           1 RDLEVVAATPTSLLISWDAPAV----TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDS   76 (91)
T ss_dssp             CCCEEEEECSSCEEEECCCCSS----CCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCS
T ss_pred             CCCEEEEeCCCEEEEEEEccce----EecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCccC
Confidence            4789999999999999998642    588999999987766666666667888999999999999999999999999998


Q ss_pred             CCCCC
Q psy7040         409 EPSDP  413 (716)
Q Consensus       409 ~~s~~  413 (716)
                      .++..
T Consensus        77 ~~~s~   81 (91)
T d1fnaa_          77 PASSK   81 (91)
T ss_dssp             SCSCC
T ss_pred             CCcCC
Confidence            76653

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.2e-11  Score=90.25  Aligned_cols=94  Identities=17%  Similarity=0.081  Sum_probs=73.1

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCCC---CCccceEEEEEEcCCCCcEE-EecccCCCeEEecCCCCCcEEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDG---GEPLEGYLVEKYDPETGVWI-PVGKTREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~---~~~i~~y~v~~~~~~~~~~~-~~~~~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      ++.||..+.+..++.++|.|+|++|....   ...+..|.|+++..+...+. ........++.|.||.|++.|.|+|+|
T Consensus         1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   80 (100)
T d1x5ja1           1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMV   80 (100)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEECCEEEE
T ss_pred             CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCCCccEEEECCCCCCCEEEEEEEE
Confidence            35677788999999999999999874322   24577899998876654432 222344578999999999999999999


Q ss_pred             EecCccCCCccccceEEe
Q psy7040         130 LNKEGESEPLETFSSIIA  147 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~~~  147 (716)
                      .|..|.|.+|......+.
T Consensus        81 ~n~~g~s~~S~~~~~~T~   98 (100)
T d1x5ja1          81 TKGRRSSTWSMTAHGTTF   98 (100)
T ss_dssp             ECSSCBCCCCCCCCEECC
T ss_pred             EeCCcCcCCCCeEEEEec
Confidence            999999999987776653

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.13  E-value=3.4e-11  Score=90.36  Aligned_cols=84  Identities=23%  Similarity=0.453  Sum_probs=77.1

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++...|.|.|+|.|.|..|....++
T Consensus         6 P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   85 (91)
T d1tnna_           6 PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEF   85 (91)
T ss_dssp             CCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEE
T ss_pred             CcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEE
Confidence            45688999999999999999999999999999999888888888888899999999999999999999999999988887


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+.|
T Consensus        86 ~l~V   89 (91)
T d1tnna_          86 TLTI   89 (91)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            7765

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.6e-11  Score=88.98  Aligned_cols=86  Identities=22%  Similarity=0.336  Sum_probs=70.0

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      .++|.++.+...+.++|.|+|.+|..    .+.+|.|+|+......+.. .........+.|.+|.|++.|.|+|+|.|.
T Consensus         2 l~aP~n~~~~~~s~~si~l~W~~p~~----~~~~Y~i~y~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   76 (92)
T d1qg3a1           2 LGAPQNPNAKAAGSRKIHFNWLPPSG----KPMGYRVKYWIQGDSESEA-HLLDSKVPSVELTNLYPYCDYEMKVCAYGA   76 (92)
T ss_dssp             CCCCEEEEEEECSTTCEEEEEECCSS----CCCEEEEEEEETTSCGGGC-EEEEESSSEEEECSCCTTCEEEEEEEEECS
T ss_pred             CCcCCCCEEEEccCCEEEEEEEecCC----CccceEEeeeeccccccEE-EEecCCccEEEECCCCCCcEEEEEEEEEeC
Confidence            35789999999999999999999732    4789999998776443322 223567789999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy7040         405 GGPGEPSDPTA  415 (716)
Q Consensus       405 ~g~~~~s~~~~  415 (716)
                      .|.|.+|....
T Consensus        77 ~G~g~~S~~~~   87 (92)
T d1qg3a1          77 QGEGPYSSLVS   87 (92)
T ss_dssp             SCBCCCCCCEE
T ss_pred             CcCcCCCCCEE
Confidence            99998887543

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.9e-10  Score=91.12  Aligned_cols=103  Identities=19%  Similarity=0.228  Sum_probs=74.8

Q ss_pred             CCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCC-CCCCCccceEEEEEEeecCCCceEEEeeecCCCCe
Q psy7040         305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPP-EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK  383 (716)
Q Consensus       305 g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p-~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  383 (716)
                      |.+..+...   .+.+...+|..|..+.+.....+.+.|+|+++ ..+.++.+.+|+|+|+..+...+....    ....
T Consensus         1 G~s~~S~~v---~v~T~~~~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~----~~~~   73 (117)
T d1wj3a_           1 GSSGSSGTV---NVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLN----TNKT   73 (117)
T ss_dssp             CCCCCCCCC---CCCCSCCCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEE----ESSS
T ss_pred             CcCCCCCCE---EEEcCCCCcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeee----ceee
Confidence            344444443   34444567776555556667899999999974 334456899999999987755554332    3456


Q ss_pred             EEecCCCCCCeEEEEEEEEeCCCCCCCCCCC
Q psy7040         384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT  414 (716)
Q Consensus       384 ~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~  414 (716)
                      +.+.+|.+++.|.|+|+|.|..|.|.+|+..
T Consensus        74 ~~~~~L~p~t~Y~~~V~A~n~~G~G~~S~~v  104 (117)
T d1wj3a_          74 SAELVLPIKEDYIIEVKATTDGGDGTSSEQI  104 (117)
T ss_dssp             EEEEECCCSSCEEEEEEEEESSCCCCBCCCE
T ss_pred             EEEeeccCCcEEEEEEEEEcCCccCCCCCCE
Confidence            7788999999999999999999999888653

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.4e-10  Score=87.02  Aligned_cols=83  Identities=18%  Similarity=0.222  Sum_probs=70.7

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      +.+|.++.+..++.+++.|+|.+|..    .+.+|.|.|...+...+........+..++.|.+|.|++.|.|+|.|.|.
T Consensus         2 ld~P~~l~v~~~s~~s~~l~W~~p~~----~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   77 (90)
T d1tena_           2 LDAPSQIEVKDVTDTTALITWFKPLA----EIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRG   77 (90)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECCSS----CCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCCcEEEEecCCEEEEEEEeCce----EeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEeC
Confidence            45789999999999999999998642    58899999998776555555566788899999999999999999999999


Q ss_pred             CCCCCCC
Q psy7040         405 GGPGEPS  411 (716)
Q Consensus       405 ~g~~~~s  411 (716)
                      .|.+.++
T Consensus        78 ~g~s~~~   84 (90)
T d1tena_          78 DMSSNPA   84 (90)
T ss_dssp             TEECCCE
T ss_pred             CCEeCCE
Confidence            9987653

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.1e-10  Score=88.34  Aligned_cols=85  Identities=26%  Similarity=0.400  Sum_probs=69.7

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      |++|. +.+.....+++.|+|.+|...+ +.+.+|.|+++..+...|.... ......++.|.+|.+++.|.|+|+|.|.
T Consensus         1 P~~P~-~~~~~~~~~sv~l~W~pP~~~~-g~i~~Y~i~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   77 (94)
T d2dn7a1           1 PGRPT-MMISTTAMNTALLQWHPPKELP-GELLGYRLQYCRADEARPNTID-FGKDDQHFTVTGLHKGTTYIFRLAAKNR   77 (94)
T ss_dssp             CCCCE-EEEEECSTTEEEEEEECCSSCS-SCCCEEEEEEEETTCSSCEEEE-EETTCCEEEEECCCTTCEEEEEEEEEET
T ss_pred             CCCCc-EeEEEEeCCEEEEEEeCCCCCC-CceEEEEEEEEEcCCCCcEEEE-cCCCccEEEEEccCCeeEEEEEEEEEcC
Confidence            55665 5566678899999999987654 4899999999988766666543 4567889999999999999999999999


Q ss_pred             CCCCCCCC
Q psy7040         405 GGPGEPSD  412 (716)
Q Consensus       405 ~g~~~~s~  412 (716)
                      .|.|+++.
T Consensus        78 ~G~g~~s~   85 (94)
T d2dn7a1          78 AGLGEEFE   85 (94)
T ss_dssp             TEEEEEEE
T ss_pred             CcCCCCcc
Confidence            99887654

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.7e-10  Score=86.73  Aligned_cols=81  Identities=14%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  406 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g  406 (716)
                      +|.++.+...+.+++.|+|.+|.   ++.+.+|.|+|+..+...+............+.|.+|.|++.|.|+|+|.+..|
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   79 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQH   79 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT---TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             cCCceEEEEeCCCEEEEEEEecC---CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCCC
Confidence            58899999999999999999863   236889999999877666666666677889999999999999999999999988


Q ss_pred             CCCC
Q psy7040         407 PGEP  410 (716)
Q Consensus       407 ~~~~  410 (716)
                      .|.+
T Consensus        80 ~S~p   83 (91)
T d1fnfa2          80 ESTP   83 (91)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            7653

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.8e-10  Score=89.54  Aligned_cols=90  Identities=17%  Similarity=0.290  Sum_probs=67.8

Q ss_pred             CCCCCceEEE--EeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC---cEEEec-ccCCCeEEecCCCCCcEEEEEEEE
Q psy7040          56 DPEGPLEVSN--IHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG---VWIPVG-KTREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        56 ~p~~~l~~~~--~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~---~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      .||.++.+..  .+.+++.|+|++|...+ +++.+|.|+|+.....   .|.... ....+++.|.||.+++.|.|+|+|
T Consensus        13 ~pP~~~~v~~~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   91 (111)
T d1x5ka1          13 SPPKDVTVVSKEGKPKTIIVNWQPPSEAN-GKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQA   91 (111)
T ss_dssp             SCCEEEEEEECSSCTTCEEEEEECCSCCS-SCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCSSSEEEEEEEE
T ss_pred             CCCCCcEEEEecCCCCEEEEEEEccccCC-CceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCCCCCEEEEEEEE
Confidence            3455566554  45679999999988654 4699999999865543   333332 334578999999999999999999


Q ss_pred             EecCccCCCccccceEE
Q psy7040         130 LNKEGESEPLETFSSII  146 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~~  146 (716)
                      .|..|.|.+|......+
T Consensus        92 ~n~~G~g~~S~~v~~~T  108 (111)
T d1x5ka1          92 RNSKGMGPMSEAVQFRT  108 (111)
T ss_dssp             ECSSCBCCCCCCEEEEC
T ss_pred             EcCCCCcCCCCCEEEEC
Confidence            99999999887665544

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.8e-11  Score=92.11  Aligned_cols=93  Identities=25%  Similarity=0.340  Sum_probs=74.1

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEE-eeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKC-AQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      ..+.+|.++.+. .+.++|.|+|.+|... ++++.+|.|+++..+ ..|... .......+.+.|.+|.+++.|.|+|+|
T Consensus         6 s~~sPP~~~~~~-~t~~si~l~W~pp~~~-~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A   82 (108)
T d1v5ja_           6 SGLSPPRGLVAV-RTPRGVLLHWDPPELV-PKRLDGYVLEGRQGS-QGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVA   82 (108)
T ss_dssp             CCCCCCEEEEEE-ECSSSEEEEEECCSCC-SSCCCBEEEEEEETT-CCCEEEEEEECSSCCEEECCCCCTTSCEECCBEE
T ss_pred             CCCCcCCCeEEE-EcCCEEEEEEEecccC-CCceeEEEEEeeeee-eeeeeccccccceeeeEEEEeccCCcEEEEEEEE
Confidence            346678888775 5788999999997765 447999999998876 445443 345667889999999999999999999


Q ss_pred             EeCCCCCCCCCCCCceE
Q psy7040         402 VNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~~  418 (716)
                      +|..|.|.++......+
T Consensus        83 ~n~~g~s~~S~~~~~~T   99 (108)
T d1v5ja_          83 FAGSFVSDPSNTANVST   99 (108)
T ss_dssp             EETTEEEEECSCCCCCC
T ss_pred             EeCCCEeCCcCceEEEC
Confidence            99999998887655543

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.8e-10  Score=90.56  Aligned_cols=84  Identities=19%  Similarity=0.281  Sum_probs=67.6

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE  135 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~  135 (716)
                      .+|.++.+. ...+++.|+|++|... ++++.+|.|+|+..+...+........+.+.|.+|.+++.|.|+|+|.|..|.
T Consensus        22 ~~P~~~~~~-~~~~si~v~W~~p~~~-~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~   99 (113)
T d1x5ia1          22 EVPSSLHVR-PLVTSIVVSWTPPENQ-NIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGE   99 (113)
T ss_dssp             CSCSEEEEE-EETTEEEEEEECCSCT-TBCCCEEEEEECSSCGGGEEEECCTTCCEEEECSCCSSCEECCEEEEECSSCB
T ss_pred             CCCEeeeee-eCCCEEEEEEEccccC-CccEEEEEEEeeeccccceeeeeeCCccEEEEeccccCcEEEEEEEEECCCcC
Confidence            344456554 4578999999998754 45799999999887776676665566789999999999999999999999999


Q ss_pred             CCCccc
Q psy7040         136 SEPLET  141 (716)
Q Consensus       136 ~~~s~~  141 (716)
                      |.++..
T Consensus       100 g~~~~~  105 (113)
T d1x5ia1         100 GIPLYE  105 (113)
T ss_dssp             CCCCCC
T ss_pred             CCCeee
Confidence            986544

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.11  E-value=3e-10  Score=87.90  Aligned_cols=88  Identities=15%  Similarity=0.172  Sum_probs=68.6

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCC-CCCCCccceEEEEEEcCC-CCcEEEec--ccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPK-DDGGEPLEGYLVEKYDPE-TGVWIPVG--KTREPEMDVTGLTPGHEYKFRVKALN  131 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~-~~~~~~i~~y~v~~~~~~-~~~~~~~~--~~~~~~~~i~~L~~~~~y~~~v~a~~  131 (716)
                      .+|..+++...+.++|.|+|+++. ...++++.+|.|.|+..+ ...|....  ....+++.|.+|.+++.|.|+|+|.|
T Consensus         6 ~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N   85 (105)
T d1cfba2           6 KNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAIN   85 (105)
T ss_dssp             CCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEE
T ss_pred             CCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEEEEe
Confidence            356678888899999999999754 234457999999997665 33444333  33457999999999999999999999


Q ss_pred             cCccCCCccccc
Q psy7040         132 KEGESEPLETFS  143 (716)
Q Consensus       132 ~~g~~~~s~~~~  143 (716)
                      ..|.|.++....
T Consensus        86 ~~G~gp~S~~~v   97 (105)
T d1cfba2          86 DRGESNVAAEEV   97 (105)
T ss_dssp             TTEECSSCCCCE
T ss_pred             CCcCCCCCCCcE
Confidence            999998775543

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.8e-10  Score=86.73  Aligned_cols=83  Identities=20%  Similarity=0.345  Sum_probs=63.8

Q ss_pred             CCCCCCCceEEEEeCC-eEEEEecCCCCCCCCccceEEEEEEcCCCCcE---EEecccCCCeEEecCCCCCcEEEEEEEE
Q psy7040          54 GLDPEGPLEVSNIHKD-GCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW---IPVGKTREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~-s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~---~~~~~~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      ++.||.+|++.....+ ++.|+|++|.   +..+.+|+|+|+..++..+   ........+++.|.||.|++.|.|+|.|
T Consensus         1 P~~PP~~l~v~~~~~ts~i~v~W~~p~---~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a   77 (94)
T d1fnfa1           1 PLSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT   77 (94)
T ss_dssp             CCCCCEEEEEEECSSSSCEEEEEECCS---CSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEE
T ss_pred             CCCcCcCcEEEEecCCCEEEEEeeCCC---CCCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEE
Confidence            4578888998888765 5999999874   2349999999987654332   2222334589999999999999999999


Q ss_pred             EecCccCCCc
Q psy7040         130 LNKEGESEPL  139 (716)
Q Consensus       130 ~~~~g~~~~s  139 (716)
                      .+..|.|.+.
T Consensus        78 ~~~~g~s~p~   87 (94)
T d1fnfa1          78 VKDDKESVPI   87 (94)
T ss_dssp             EETTEECCCE
T ss_pred             EcCCCEeCCE
Confidence            9999988654

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=9.5e-11  Score=87.73  Aligned_cols=79  Identities=23%  Similarity=0.421  Sum_probs=67.5

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  406 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g  406 (716)
                      +|.++.+...+.+++.|+|.+|..    .+.+|.|+++..+...+...........++.|.+|.|++.|.|+|+|.|..|
T Consensus         3 aP~nl~v~~~~~~s~~l~W~~p~~----~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~g   78 (89)
T d1fnha3           3 APSNLRFLATTPNSLLVSWQPPRA----RITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQ   78 (89)
T ss_dssp             CCEEEEEEEEETTEEEEEEECCSS----CCSEEEEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESSSC
T ss_pred             cCcCCEEEEecCCEEEEEEeCCCc----CCceEEEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcCCC
Confidence            588999999999999999998642    5899999999877666655555567788999999999999999999999988


Q ss_pred             CCC
Q psy7040         407 PGE  409 (716)
Q Consensus       407 ~~~  409 (716)
                      .|.
T Consensus        79 ~S~   81 (89)
T d1fnha3          79 KSE   81 (89)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            764

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=7.2e-11  Score=87.95  Aligned_cols=82  Identities=15%  Similarity=0.284  Sum_probs=61.9

Q ss_pred             CCceEEEEe--CCeEEEEecCCCCCCCCccceEEEEEEcCCCC-cEEEec-ccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          59 GPLEVSNIH--KDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-VWIPVG-KTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        59 ~~l~~~~~~--~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~-~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      ..+.+...+  .+++.|+|++|.   +.+|.+|+|+|+..++. .|.... .....+++|.||+|++.|.|+|.|+|..|
T Consensus         4 ~~~~vt~~~~~~~s~~vsW~~P~---~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~~~G   80 (93)
T d1owwa_           4 VEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYG   80 (93)
T ss_dssp             CEEECCCCSSCTTCEEEEEECCS---SSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEESSS
T ss_pred             cccEEEEccCCCCEEEEEeeccc---ccceeEEEEEEeeccccceeeeeccCCCccEEEECCcccCcEEEEEEEEEeCCC
Confidence            334455444  479999999984   34699999999976543 344443 33458999999999999999999999999


Q ss_pred             cCCCccccc
Q psy7040         135 ESEPLETFS  143 (716)
Q Consensus       135 ~~~~s~~~~  143 (716)
                      .++.+....
T Consensus        81 ~s~~~~~~~   89 (93)
T d1owwa_          81 HQEVTRFDF   89 (93)
T ss_dssp             CEEEEEEEE
T ss_pred             ccCcEEEEE
Confidence            888765433

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.5e-10  Score=87.76  Aligned_cols=82  Identities=21%  Similarity=0.424  Sum_probs=69.2

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  405 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~  405 (716)
                      .+|.++++..++.+++.|+|.+|..    .+.+|.+.|+......+...........++.+.+|.|++.|.|+|.|.|..
T Consensus         3 d~P~~l~v~~vt~~sv~l~W~~p~~----~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   78 (94)
T d1j8ka_           3 DRPKGLAFTDVDVDSIKIAWESPQG----QVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDD   78 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCSS----CCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSS
T ss_pred             CCCCCCEEEEecCCEEEEEEeCCCc----cccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence            4688999999999999999998743    478999999887755555555567788999999999999999999999999


Q ss_pred             CCCCCC
Q psy7040         406 GPGEPS  411 (716)
Q Consensus       406 g~~~~s  411 (716)
                      |.|.+.
T Consensus        79 g~S~p~   84 (94)
T d1j8ka_          79 MESQPL   84 (94)
T ss_dssp             CCCCCE
T ss_pred             CCcCCE
Confidence            877543

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1.3e-10  Score=89.40  Aligned_cols=91  Identities=23%  Similarity=0.299  Sum_probs=73.4

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecC-CCCCCCccceEEEEEEeecCCCceE--EEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTP-PEQNGGSPIVGYIIEKKEKYSPIWE--KCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~-p~~~~~~~i~~y~v~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      +.+|.++.+..++.+++.|+|.+ +....++.+.+|.|+++..+...+.  ..........++.|.+|.+++.|.|+|+|
T Consensus         2 ~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a   81 (101)
T d1x4ya1           2 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQC   81 (101)
T ss_dssp             CSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEEE
Confidence            56789999999999999999986 4455567899999999976543322  22234567788999999999999999999


Q ss_pred             EeCCCCCCCCCCCC
Q psy7040         402 VNKGGPGEPSDPTA  415 (716)
Q Consensus       402 ~n~~g~~~~s~~~~  415 (716)
                      +|..|.|++|....
T Consensus        82 ~n~~G~s~~S~~~~   95 (101)
T d1x4ya1          82 FNEGGESEFSNVMI   95 (101)
T ss_dssp             ECTTCCCCCCCCEE
T ss_pred             EcCCCCCCCCCcEE
Confidence            99999999887543

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1e-10  Score=89.66  Aligned_cols=70  Identities=23%  Similarity=0.354  Sum_probs=59.9

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG  707 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~  707 (716)
                      |.|.+.|    .+.|++++..+...      .......|.|.++...|+|.|+|.|.|..|..+.++.|.|.++|.+|.+
T Consensus        20 l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P~pP~g   99 (101)
T d2cqva1          20 LFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG   99 (101)
T ss_dssp             EEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCCCC
T ss_pred             EEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecCCCcCC
Confidence            5566565    89999999988665      2333468999999999999999999999999999999999999999864

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=2.2e-10  Score=88.75  Aligned_cols=87  Identities=11%  Similarity=0.082  Sum_probs=65.7

Q ss_pred             ceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEc-CCCCcEEEeccc--CCCeEEecCCCCCcEEEEEEEEEecCccCC
Q psy7040          61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYD-PETGVWIPVGKT--REPEMDVTGLTPGHEYKFRVKALNKEGESE  137 (716)
Q Consensus        61 l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~-~~~~~~~~~~~~--~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~  137 (716)
                      +.+...+.++|.|+|++|... +..+.+|.|+|+. .+...|..+...  ..++++|.+|.+++.|.|+|+|.+..|.+.
T Consensus        14 p~~~~~~~~~i~v~W~pp~~~-~~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~~g~g~   92 (106)
T d1cd9b2          14 PDVVSHQPGCLWLSWKPWKPS-EYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGF   92 (106)
T ss_dssp             ------CCSCEEEEEECCGGG-TTSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCC
T ss_pred             CeEecCCCCEEEEEEcCcccC-CccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEeCCCCCC
Confidence            467788899999999998754 4458999999986 455678776543  347899999999999999999999999988


Q ss_pred             CccccceEEec
Q psy7040         138 PLETFSSIIAR  148 (716)
Q Consensus       138 ~s~~~~~~~~~  148 (716)
                      +|..+..+...
T Consensus        93 wS~wS~~~~~~  103 (106)
T d1cd9b2          93 WSPWSPGLQLR  103 (106)
T ss_dssp             CCCCCCCEEEC
T ss_pred             CcCCCCCeEec
Confidence            88776665544

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.6e-10  Score=84.61  Aligned_cols=77  Identities=14%  Similarity=0.155  Sum_probs=66.1

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG  134 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g  134 (716)
                      +.||.+|.+..++.+++.|+|++|..   ..+..|+|+|+..+...|........+.++|.+|.|++.|.|||+|.+..+
T Consensus         3 P~~P~nl~v~~~~~~~v~l~W~~p~~---~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frVRa~~~~~   79 (95)
T d2b5ic1           3 PWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPL   79 (95)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECSSC---STTCEEEEEEEETTCSSCEEEEECSSCEEEECSCCTTSCEEEEEEEECCSS
T ss_pred             CcCCCCCEEEEEeCCEEEEEECCCCC---ceeEEEEEEEEcCCCceeeEeeecccceeEcCCCCCCCEEEEEEEEeeCCC
Confidence            45677788889999999999998752   347889999999998889887777778999999999999999999986654

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.6e-10  Score=90.63  Aligned_cols=96  Identities=29%  Similarity=0.404  Sum_probs=76.7

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCce-EEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW-EKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      ..|.+|.++++...+.++|.|+|.+|.. .+..+..|.++++......+ ............+.+.+|.+++.|.|+|+|
T Consensus        15 d~P~~P~~~~v~~~~~~sv~l~W~~p~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A   93 (127)
T d1ueya_          15 DVPNPPFDLELTDQLDKSVQLSWTPGDD-NNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMA   93 (127)
T ss_dssp             CSCCCCEEEEEECCSSSCEEEEEECCCC-CSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEECCEEEE
T ss_pred             ccCcCCCCcEEEEecCCeEEEEEeCCcc-cccceEeeeeeeccccccceeEEEEeecCCceEEEECCCccCCEEEEEEEE
Confidence            5788999999999999999999998765 44578999999987653322 222223456778999999999999999999


Q ss_pred             EeCCCCCCCCCCCCceEe
Q psy7040         402 VNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~~~  419 (716)
                      .|..|.|.++.....++.
T Consensus        94 ~n~~G~s~~S~~s~~~~t  111 (127)
T d1ueya_          94 VNSIGKSLPSEASEQYLT  111 (127)
T ss_dssp             EESSCBCCCCSCCCCEEC
T ss_pred             EcCCcCcCCcCCcccEEc
Confidence            999999999887665543

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.6e-10  Score=87.61  Aligned_cols=90  Identities=21%  Similarity=0.195  Sum_probs=66.7

Q ss_pred             CCCCCCceEE----EEeCCeEEEEecCCCCC---CCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEE
Q psy7040          55 LDPEGPLEVS----NIHKDGCTLKWNKPKDD---GGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRV  127 (716)
Q Consensus        55 ~~p~~~l~~~----~~~~~s~~l~W~~p~~~---~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v  127 (716)
                      ++||.+|.+.    +.+.++|.|+|++|...   .+..+..|+++++..+...|........+.++|.+|.+++.|.|+|
T Consensus         3 P~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV   82 (104)
T d3d48r2           3 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQV   82 (104)
T ss_dssp             CCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEEEETCSEEEECC--CCCEEEEEE
T ss_pred             CcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeeccccccEEEECCCCCCCEEEEEE
Confidence            3556656554    55677899999998632   2344678999999888888877777777899999999999999999


Q ss_pred             EEEecCcc-CCCccccce
Q psy7040         128 KALNKEGE-SEPLETFSS  144 (716)
Q Consensus       128 ~a~~~~g~-~~~s~~~~~  144 (716)
                      +|.|..|. |++|.....
T Consensus        83 rA~n~~G~ws~wS~~~~v  100 (104)
T d3d48r2          83 RCKPDHGYWSAWSPATFI  100 (104)
T ss_dssp             EEEESSSCCCCCCCCEEE
T ss_pred             EEEeCCCCCCCCcCCEEE
Confidence            99999995 888866544

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=2.3e-10  Score=86.22  Aligned_cols=82  Identities=16%  Similarity=0.232  Sum_probs=66.3

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcE-EE-ecccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-IP-VGKTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~-~~-~~~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +++|.++.+..++.+++.|+|++|.    .++.+|.|+|+..++..+ .. ......++++|.+|.|++.|.|+|+|.+.
T Consensus         4 ~~~P~~l~v~~v~~~si~v~W~~p~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~   79 (93)
T d1tdqa1           4 IDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRG   79 (93)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCcCCCCEEEEeCCCEEEEEEEccc----cCCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEeC
Confidence            3566778999999999999999874    348999999987765433 22 23334589999999999999999999999


Q ss_pred             CccCCCcc
Q psy7040         133 EGESEPLE  140 (716)
Q Consensus       133 ~g~~~~s~  140 (716)
                      .|.+.++.
T Consensus        80 ~g~s~~~~   87 (93)
T d1tdqa1          80 TNESDASS   87 (93)
T ss_dssp             TEECCCEE
T ss_pred             CCCcCCEE
Confidence            99987664

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.08  E-value=2.5e-10  Score=84.74  Aligned_cols=81  Identities=21%  Similarity=0.305  Sum_probs=64.7

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .+|.+|.++.+..++.++++|+|++|..+.  .+.+|.|++...      ..  ......++.+.+|.+++.|.|+|+|.
T Consensus         2 ~AP~~P~~l~~~~~~~~sv~lsW~~p~~~~--~i~~Y~i~~~~~------~~--~~~~~t~~~~~~L~p~t~Y~~~V~A~   71 (88)
T d1k85a_           2 MAPTAPTNLASTAQTTSSITLSWTASTDNV--GVTGYDVYNGTA------LA--TTVTGTTATISGLAADTSYTFTVKAK   71 (88)
T ss_dssp             CSCCCCEEEEEEEECSSCEEEEEECCSCCS--SEEEEEEEESSS------EE--EEESSSEEEECCCCSSCEEEEEEEEE
T ss_pred             cCcCCCCCcEEEEecCCEEEEEEeCCCCCC--CEEEEEEEccce------EE--EecCCCEEEECCCCCCCEEEEEEEEE
Confidence            358899999999999999999999876433  488999976421      11  12356789999999999999999999


Q ss_pred             eCCC-CCCCCCC
Q psy7040         403 NKGG-PGEPSDP  413 (716)
Q Consensus       403 n~~g-~~~~s~~  413 (716)
                      |..| .+.+|..
T Consensus        72 n~~G~~s~~S~~   83 (88)
T d1k85a_          72 DAAGNVSAASNA   83 (88)
T ss_dssp             ETTTEECCCCCC
T ss_pred             ECCCCcCCCCcC
Confidence            9999 5776654

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3e-10  Score=87.30  Aligned_cols=93  Identities=14%  Similarity=0.079  Sum_probs=72.7

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCC---CccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEE
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNG---GSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  401 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~---~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a  401 (716)
                      +.+|.++.+...+.+++.|+|++|....   ...+..|.|.++..+...+. .........++.|.+|.|++.|.|+|+|
T Consensus         2 ~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   80 (100)
T d1x5ja1           2 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK-YKNANATTLSYLVTGLKPNTLYEFSVMV   80 (100)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCC-CEECCBCSSEEEEESCCTTCEECCEEEE
T ss_pred             CCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcce-eEecCCCccEEEECCCCCCCEEEEEEEE
Confidence            4568899999999999999999864322   23567899998876644432 2233456788999999999999999999


Q ss_pred             EeCCCCCCCCCCCCceE
Q psy7040         402 VNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       402 ~n~~g~~~~s~~~~~~~  418 (716)
                      .|..|.|.+|......+
T Consensus        81 ~n~~g~s~~S~~~~~~T   97 (100)
T d1x5ja1          81 TKGRRSSTWSMTAHGTT   97 (100)
T ss_dssp             ECSSCBCCCCCCCCEEC
T ss_pred             EeCCcCcCCCCeEEEEe
Confidence            99999999998766554

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.5e-10  Score=88.93  Aligned_cols=86  Identities=20%  Similarity=0.284  Sum_probs=70.5

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .+|.+|.++.+.. ..+++.|+|.+|...+ +++.+|.|+++..+...+.  .........+.|.+|.+++.|.|+|+|.
T Consensus        19 ~vP~~P~~~~~~~-~~~si~v~W~~p~~~~-g~i~~Y~i~~~~~~~~~~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   94 (113)
T d1x5ia1          19 RVPEVPSSLHVRP-LVTSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQT--IKVDYKQRYYTIENLDPSSHYVITLKAF   94 (113)
T ss_dssp             SCCCSCSEEEEEE-ETTEEEEEEECCSCTT-BCCCEEEEEECSSCGGGEE--EECCTTCCEEEECSCCSSCEECCEEEEE
T ss_pred             CCCCCCEeeeeee-CCCEEEEEEEccccCC-ccEEEEEEEeeecccccee--eeeeCCccEEEEeccccCcEEEEEEEEE
Confidence            5788999998864 5689999999977654 4899999999877644433  3345678899999999999999999999


Q ss_pred             eCCCCCCCCC
Q psy7040         403 NKGGPGEPSD  412 (716)
Q Consensus       403 n~~g~~~~s~  412 (716)
                      |..|.|++..
T Consensus        95 n~~G~g~~~~  104 (113)
T d1x5ia1          95 NNVGEGIPLY  104 (113)
T ss_dssp             CSSCBCCCCC
T ss_pred             CCCcCCCCee
Confidence            9999997654

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.2e-10  Score=88.58  Aligned_cols=87  Identities=18%  Similarity=0.329  Sum_probs=67.8

Q ss_pred             CCCCCceEEEEe------CCeEEEEecCCCCC---CCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEE
Q psy7040          56 DPEGPLEVSNIH------KDGCTLKWNKPKDD---GGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFR  126 (716)
Q Consensus        56 ~p~~~l~~~~~~------~~s~~l~W~~p~~~---~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~  126 (716)
                      +||.+|+++...      .++|.|+|++|...   ++..+..|+|+|+..+...|..+.....+.+.|.+|.+++.|.|+
T Consensus         2 dPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~~~~~~~~i~~L~~~t~Y~fr   81 (106)
T d1axib2           2 DPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVR   81 (106)
T ss_dssp             CCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCCBSSSEEEEEEEETTSCEEEE
T ss_pred             cCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeeecccceEEECCCCCCCEEEEE
Confidence            566667665332      34799999998642   333577899999999999999888777799999999999999999


Q ss_pred             EEEEecCc--cCCCcccc
Q psy7040         127 VKALNKEG--ESEPLETF  142 (716)
Q Consensus       127 v~a~~~~g--~~~~s~~~  142 (716)
                      |+|.+..|  +|++|...
T Consensus        82 VRa~~~~~g~ws~wS~~v   99 (106)
T d1axib2          82 VRSKQRNSGNYGEFSEVL   99 (106)
T ss_dssp             EEEEETTSSCCCCCCCCE
T ss_pred             EEEEECCCCCCCCCCCCE
Confidence            99998654  46666543

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=4.4e-10  Score=84.62  Aligned_cols=84  Identities=17%  Similarity=0.183  Sum_probs=72.0

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEe
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  403 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n  403 (716)
                      ++.+|.++.+..++.+++.|+|.+|..    .+.+|.|+++..+...+......+....++++.+|.|++.|.|+|+|.+
T Consensus         3 v~~~P~~l~v~~v~~~si~v~W~~p~~----~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~   78 (93)
T d1tdqa1           3 VIDGPTQILVRDVSDTVAFVEWTPPRA----KVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVR   78 (93)
T ss_dssp             SSCCCEEEEEEEECSSCEEEEEECCSS----CCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred             cCCcCCCCEEEEeCCCEEEEEEEcccc----CCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEe
Confidence            456899999999999999999998642    5889999999887666666666777889999999999999999999999


Q ss_pred             CCCCCCCC
Q psy7040         404 KGGPGEPS  411 (716)
Q Consensus       404 ~~g~~~~s  411 (716)
                      ..|.|.++
T Consensus        79 ~~g~s~~~   86 (93)
T d1tdqa1          79 GTNESDAS   86 (93)
T ss_dssp             TTEECCCE
T ss_pred             CCCCcCCE
Confidence            99987654

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=2.5e-10  Score=87.79  Aligned_cols=92  Identities=14%  Similarity=0.198  Sum_probs=71.7

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCC-CCCCCCccceEEEEEEcCCCCcE---EE-ecccCCCeEEecCCCCCcEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKP-KDDGGEPLEGYLVEKYDPETGVW---IP-VGKTREPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p-~~~~~~~i~~y~v~~~~~~~~~~---~~-~~~~~~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      +.+|.++.+..++.++|.|+|+++ ....++++.+|.|+|+..+...+   .. .......++.|.+|++++.|.|+|+|
T Consensus         2 ~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a   81 (101)
T d1x4ya1           2 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQC   81 (101)
T ss_dssp             CSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEEE
Confidence            456677888899999999999864 33455679999999987654332   22 22233478999999999999999999


Q ss_pred             EecCccCCCccccceEE
Q psy7040         130 LNKEGESEPLETFSSII  146 (716)
Q Consensus       130 ~~~~g~~~~s~~~~~~~  146 (716)
                      .|..|.|.+|......+
T Consensus        82 ~n~~G~s~~S~~~~~~T   98 (101)
T d1x4ya1          82 FNEGGESEFSNVMICET   98 (101)
T ss_dssp             ECTTCCCCCCCCEEEEC
T ss_pred             EcCCCCCCCCCcEEEEc
Confidence            99999999998776554

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.8e-10  Score=85.69  Aligned_cols=82  Identities=23%  Similarity=0.256  Sum_probs=64.9

Q ss_pred             CCCCcEEEeee--CCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         327 KPGTPEIKDFD--TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       327 ~p~~~~~~~~~--~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      +|.++.+....  .+++.|+|++|.   +..|.+|+|+|+..++..+......+....+++|.+|+|++.|.|+|.|+|.
T Consensus         2 aP~~~~vt~~~~~~~s~~vsW~~P~---~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~~   78 (93)
T d1owwa_           2 GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQ   78 (93)
T ss_dssp             CCCEEECCCCSSCTTCEEEEEECCS---SSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEES
T ss_pred             cCcccEEEEccCCCCEEEEEeeccc---ccceeEEEEEEeeccccceeeeeccCCCccEEEECCcccCcEEEEEEEEEeC
Confidence            45666665554  479999999974   3369999999998765554344556788899999999999999999999999


Q ss_pred             CCCCCCC
Q psy7040         405 GGPGEPS  411 (716)
Q Consensus       405 ~g~~~~s  411 (716)
                      .|.++.+
T Consensus        79 ~G~s~~~   85 (93)
T d1owwa_          79 YGHQEVT   85 (93)
T ss_dssp             SSCEEEE
T ss_pred             CCccCcE
Confidence            9987654

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.4e-10  Score=87.99  Aligned_cols=94  Identities=17%  Similarity=0.147  Sum_probs=65.9

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCc--cceEEEEEEeecCCCceEEEeee--cCCCCeEEecCCCCCCeEEEEEE
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGS--PIVGYIIEKKEKYSPIWEKCAQT--EGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~--~i~~y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      |.+|.++.+....++++.|+|.+|...++.  ....|.|+++..+...|......  ......+.+.+|.|++.|.|+|+
T Consensus         2 P~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVr   81 (101)
T d1iarb2           2 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVR   81 (101)
T ss_dssp             CCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEEE
T ss_pred             cccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEEE
Confidence            788999999999999999999987654432  33479999988776666544333  33446788999999999999999


Q ss_pred             EEeCCCCCCCCCCCCceE
Q psy7040         401 AVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~~  418 (716)
                      |.|..|.|.+|+.+..++
T Consensus        82 A~~~~g~g~wSewS~~v~   99 (101)
T d1iarb2          82 AWAQAYNTTWSEWSPSTK   99 (101)
T ss_dssp             EECGGGTCCCCCCCCCEE
T ss_pred             EEcCCCCCCCcCCCCCEE
Confidence            999999999998876554

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2e-10  Score=90.10  Aligned_cols=94  Identities=22%  Similarity=0.361  Sum_probs=73.3

Q ss_pred             CCC-CCCCCcEEEeeeCCeEEEEecCCCC-CCCccceEEEEEEeecCCCceEEEe----eecCCCCeEEecCCCCCCeEE
Q psy7040         323 NQP-GKPGTPEIKDFDTDFVELAWTPPEQ-NGGSPIVGYIIEKKEKYSPIWEKCA----QTEGDTPKGKVLDLIEGNQYE  396 (716)
Q Consensus       323 ~~p-~~p~~~~~~~~~~~~i~l~W~~p~~-~~~~~i~~y~v~~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~~~~Y~  396 (716)
                      ++| ++|.++.+...+.+++.|+|.+|.. +.++.+.+|.|.|+..+...+....    .......++.|.+|.+++.|.
T Consensus         6 ~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   85 (109)
T d1va9a1           6 AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYG   85 (109)
T ss_dssp             CCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEE
T ss_pred             CCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEE
Confidence            445 5888999999999999999998643 4456899999999877643332211    224566789999999999999


Q ss_pred             EEEEEEeCCCCCCCCCCCCc
Q psy7040         397 FRVLAVNKGGPGEPSDPTAP  416 (716)
Q Consensus       397 ~~v~a~n~~g~~~~s~~~~~  416 (716)
                      |+|+|.|..|.|++|.+...
T Consensus        86 ~~V~a~n~~G~g~~S~~v~~  105 (109)
T d1va9a1          86 VVVQAFNRAGTGPSSSEINA  105 (109)
T ss_dssp             EEEEEEETTEECCCCCCEEC
T ss_pred             EEEEEEcCCcCCCCCCCEEE
Confidence            99999999999988865443

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.6e-10  Score=89.40  Aligned_cols=101  Identities=23%  Similarity=0.340  Sum_probs=77.6

Q ss_pred             CCCCCCcEEEe--eeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEee--ecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         325 PGKPGTPEIKD--FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ--TEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       325 p~~p~~~~~~~--~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      |.+|.++.+..  ...+++.|+|.+|...+ +.+.+|.|+|+......|.....  ......++.|.+|.+++.|.|+|+
T Consensus         5 P~pP~~~~v~~~~~~~~si~v~W~~p~~~~-~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~   83 (115)
T d1bqua2           5 PNPPHNLSVINSEELSSILKLTWTNPSIKS-VIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIR   83 (115)
T ss_dssp             CCCCEEEEEECC--CCSCEEEEEECCGGGG-TSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEE
T ss_pred             CCCCCCCEEEEeccCCCEEEEEEeeccccc-cceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEEEE
Confidence            67888887764  45788999999876544 47899999999887676655433  245678999999999999999999


Q ss_pred             EEeCCCCCCCCCCCCceEeecCCCCC
Q psy7040         401 AVNKGGPGEPSDPTAPHIARAKKVSP  426 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~~~~~~~~~P  426 (716)
                      |.|..|.|.+|..+..........+|
T Consensus        84 a~~~~G~g~~S~~S~~~~~~T~~~~P  109 (115)
T d1bqua2          84 CMKEDGKGYWSDWSEEASGITYEDRP  109 (115)
T ss_dssp             EEETTSCSCCCCCCCCEEEEECCCHH
T ss_pred             EEeCCCccCCcCCcCCEEEECCCCCC
Confidence            99999999888777665554443333

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.4e-10  Score=87.86  Aligned_cols=91  Identities=22%  Similarity=0.396  Sum_probs=70.3

Q ss_pred             CCC-CCCCCcEEEe--eeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc---eEEEeeecCCCCeEEecCCCCCCeEE
Q psy7040         323 NQP-GKPGTPEIKD--FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI---WEKCAQTEGDTPKGKVLDLIEGNQYE  396 (716)
Q Consensus       323 ~~p-~~p~~~~~~~--~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~Y~  396 (716)
                      .+| .+|.++.+..  .+.+++.|+|.+|...+ +.+.+|.++++......   |.. ........++.|.+|.+++.|.
T Consensus         9 ~~P~~pP~~~~v~~~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~   86 (111)
T d1x5ka1           9 LVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEAN-GKITGYIIYYSTDVNAEIHDWVI-EPVVGNRLTHQIQELTLDTPYY   86 (111)
T ss_dssp             CCCCSCCEEEEEEECSSCTTCEEEEEECCSCCS-SCCCEEEEEEESCSSSCTTTSEE-EEESTTCSEEEECSCCSSSEEE
T ss_pred             CCCCCCCCCcEEEEecCCCCEEEEEEEccccCC-CceeeeEEeeeecCCCCcceeEE-EEeCCCeeEEEECCCCCCCEEE
Confidence            445 4677777764  45678999999987654 48999999998655333   332 3345677899999999999999


Q ss_pred             EEEEEEeCCCCCCCCCCCC
Q psy7040         397 FRVLAVNKGGPGEPSDPTA  415 (716)
Q Consensus       397 ~~v~a~n~~g~~~~s~~~~  415 (716)
                      |+|+|.|..|.|.+|....
T Consensus        87 ~~V~A~n~~G~g~~S~~v~  105 (111)
T d1x5ka1          87 FKIQARNSKGMGPMSEAVQ  105 (111)
T ss_dssp             EEEEEECSSCBCCCCCCEE
T ss_pred             EEEEEEcCCCCcCCCCCEE
Confidence            9999999999998887543

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.06  E-value=2.2e-10  Score=85.75  Aligned_cols=87  Identities=21%  Similarity=0.289  Sum_probs=70.5

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      +|.+....+..+.+..|+.+.|.|.+.|.|.+.+.|++++......      .......|.|.++...|.|.|+|.|.|.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE------eeeeeeEEEeCCCCccCCEEEEEEEEEC
Confidence            5566555567889999999999999999999999999976543221      1123457999999999999999999999


Q ss_pred             CCceeeEEEEEEE
Q psy7040         505 WGTDKGTAKVTVL  517 (716)
Q Consensus       505 ~g~~~~s~~~~v~  517 (716)
                      .|....++.+.|.
T Consensus        78 ~G~~~~~~~l~V~   90 (91)
T d1cs6a3          78 KGRDTYQGRIIIH   90 (91)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9998888777664

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.9e-09  Score=81.11  Aligned_cols=87  Identities=15%  Similarity=0.216  Sum_probs=70.7

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      |.+|.+|.+...+.+.+.|+|.+|..   ..+..|.|+++..+...|.....  .....+++.+|.|++.|.|+|+|.+.
T Consensus         3 P~~P~nl~v~~~~~~~v~l~W~~p~~---~~~~~y~v~y~~~~~~~~~~~~~--~~~~~~~~~~L~p~t~Y~frVRa~~~   77 (95)
T d2b5ic1           3 PWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSV--DYRHKFSLPSVDGQKRYTFRVRSRFN   77 (95)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECSSC---STTCEEEEEEEETTCSSCEEEEE--CSSCEEEECSCCTTSCEEEEEEEECC
T ss_pred             CcCCCCCEEEEEeCCEEEEEECCCCC---ceeEEEEEEEEcCCCceeeEeee--cccceeEcCCCCCCCEEEEEEEEeeC
Confidence            88999999999999999999998753   24778999999988777876543  45679999999999999999999876


Q ss_pred             CC---CCCCCCCCCc
Q psy7040         405 GG---PGEPSDPTAP  416 (716)
Q Consensus       405 ~g---~~~~s~~~~~  416 (716)
                      .+   .|.+|+.+..
T Consensus        78 ~~~~~~g~WSeWS~p   92 (95)
T d2b5ic1          78 PLCGSAQHWSEWSHP   92 (95)
T ss_dssp             SSSCCCCCCCCCCCC
T ss_pred             CCCCCCCCccCCCCc
Confidence            54   3455665543

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.04  E-value=9.1e-10  Score=81.78  Aligned_cols=80  Identities=21%  Similarity=0.421  Sum_probs=68.2

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  405 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~  405 (716)
                      ++|.++++..++.+++.|+|.+|.    +.+.+|.|+|+..+...+... .......++.|.+|.|++.|.|+|.|.|..
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~~~----~~~~~Y~i~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   76 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVV-TVDGSKTRTKLVKLVPGVDYNVNIISVKGF   76 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECCCS----SCCSEEEEEEEETTCCCCEEE-EEETTCCEEEECSCCSSCEEEEEEEEEETT
T ss_pred             cCCcceEEEEecCCEEEEEEEccc----EeeceEEEEEEeccCCceEEE-EecCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence            468899999999999999999864    258899999998876666544 346678899999999999999999999999


Q ss_pred             CCCCC
Q psy7040         406 GPGEP  410 (716)
Q Consensus       406 g~~~~  410 (716)
                      |.|.+
T Consensus        77 g~s~p   81 (88)
T d1qr4a2          77 EESEP   81 (88)
T ss_dssp             EECCC
T ss_pred             CCcCC
Confidence            98754

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.3e-10  Score=87.19  Aligned_cols=99  Identities=19%  Similarity=0.362  Sum_probs=74.7

Q ss_pred             CCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEc
Q psy7040         223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVN  302 (716)
Q Consensus       223 p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n  302 (716)
                      |.+|.+ +.+..+..+++.|+|++|..    ++.+|.|.+...+...+....  .+...++.|.+|.|++.|.|+|+|.+
T Consensus         1 P~~P~~-l~~~~~t~~si~l~W~~p~~----~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~l~~L~p~t~Y~~~V~a~~   73 (102)
T d2cuha1           1 PDGPTQ-LRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAPPLQAET--PGSAVDYPLHDLVLHTNYTATVRGLR   73 (102)
T ss_dssp             CSSCEE-EECCCCSSSCEEEEEECCSS----CCSEEEEEEECSSSCCEEEEE--ETTCSEEEECSCCSSSEEEEEEEEEE
T ss_pred             CcCCCc-cEEEEeCCCEEEEEEEeeec----cceeeEEEEEeccccceeeee--eeeeeeEEEccEEeeEEEEEEEEEEe
Confidence            567777 88889999999999997642    489999999877666555433  35678999999999999999999999


Q ss_pred             CCCCCCCCcccceEEecCCCCCCCCCCCcEEEe
Q psy7040         303 KQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKD  335 (716)
Q Consensus       303 ~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~  335 (716)
                      ..|.+.+...    .+.+   .+.+|.++.+..
T Consensus        74 ~~~~s~~~~~----~~~T---~~~~P~~l~~~~   99 (102)
T d2cuha1          74 GPNLTSPASI----TFTT---GLEAPRDLEAKE   99 (102)
T ss_dssp             TTEECCCEEE----EEES---CCCCTTTSSSCC
T ss_pred             CCCCcCCEEE----EEEC---CCCCCCCCEeec
Confidence            8887765432    2222   345666666543

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=8.6e-10  Score=85.29  Aligned_cols=93  Identities=15%  Similarity=0.187  Sum_probs=69.1

Q ss_pred             CCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeC-CCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcC
Q psy7040         225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDE-ATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNK  303 (716)
Q Consensus       225 ~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~  303 (716)
                      .|.. ..+.....+++.|+|.+|...++ .+..|.|+++.. +...|.......+....+.|.+|.|++.|.|+|+|.|.
T Consensus         9 ~P~~-p~~~~~~~~~v~l~W~pp~~~~~-~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~   86 (105)
T d2d9qb2           9 MDPS-PEAAPPQAGCLQLSWEPWQPGLH-INQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRW   86 (105)
T ss_dssp             CCC--------CCSCEEEEEECCGGGTT-SCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEEC
T ss_pred             CCCC-CEeecCCCCeEEEEEcCCCCCCc-eeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEEeC
Confidence            3444 46667789999999998876555 688999999865 45567666555567789999999999999999999999


Q ss_pred             CCCCCCCcccceEEec
Q psy7040         304 QGKSEPLTTTASIEAK  319 (716)
Q Consensus       304 ~g~~~~~~~~~~~~~~  319 (716)
                      .|.+.+|..+..+..+
T Consensus        87 ~g~G~~S~wS~~~~~~  102 (105)
T d2d9qb2          87 PLPGHWSDWSPSLELR  102 (105)
T ss_dssp             SSCCCCCCCCCCEEEC
T ss_pred             CCCCCCcCCCCCEEEe
Confidence            9998877777666554

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.7e-10  Score=83.60  Aligned_cols=82  Identities=21%  Similarity=0.303  Sum_probs=69.3

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  406 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g  406 (716)
                      +|.++.+..++.+++.|+|.+|..    .+.+|.+++.......+...........+++|.+|.|++.|.|+|+|.|..|
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g   77 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPPNV----QLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTL   77 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCSS----CCSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCCEEEEEecCCEEEEEEEccce----eccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCCC
Confidence            578999999999999999998643    4778999998877555555555677889999999999999999999999999


Q ss_pred             CCCCCC
Q psy7040         407 PGEPSD  412 (716)
Q Consensus       407 ~~~~s~  412 (716)
                      .|.++.
T Consensus        78 ~s~~~~   83 (90)
T d1fnha1          78 TSRPAQ   83 (90)
T ss_dssp             ECCCEE
T ss_pred             CcCCEe
Confidence            887653

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.5e-09  Score=82.63  Aligned_cols=97  Identities=16%  Similarity=0.095  Sum_probs=75.4

Q ss_pred             CCCCCCCcEEEeee-CCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         324 QPGKPGTPEIKDFD-TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       324 ~p~~p~~~~~~~~~-~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      .|.+|.++.+.... .+.+.|.|.+|....+..+..|.|+|+..+...+..........+++.|.+|.+++.|.|+|+|.
T Consensus         4 k~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRar   83 (105)
T d1erna2           4 LLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRAR   83 (105)
T ss_dssp             CCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             ccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEEEE
Confidence            47789999988654 45699999998777777788999999988755555555556677899999999999999999999


Q ss_pred             eC--CCCCCCCCCCCceEee
Q psy7040         403 NK--GGPGEPSDPTAPHIAR  420 (716)
Q Consensus       403 n~--~g~~~~s~~~~~~~~~  420 (716)
                      +.  .+.|.+|+.+..+...
T Consensus        84 ~~~~~~~G~WSeWS~~v~~~  103 (105)
T d1erna2          84 MAEPSFGGFWSAWSEPVSLL  103 (105)
T ss_dssp             ECSSSCCBCCCCCCCCEEEE
T ss_pred             ECCCCCCCCCCCCCCCEEee
Confidence            65  3556778777666543

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=4.6e-10  Score=85.92  Aligned_cols=85  Identities=19%  Similarity=0.326  Sum_probs=69.1

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCc--EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      ..+..+..|+.+.|.|.+.|.|.|.+.|++++..+.....  ...........|.|.++...|.|.|+|.|.|..|....
T Consensus        12 ~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   91 (100)
T d1qz1a3          12 IVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDA   91 (100)
T ss_dssp             EEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEE
Confidence            3455677899999999999999999999999998764322  22333445678999999999999999999999999888


Q ss_pred             EEEEEEE
Q psy7040         511 TAKVTVL  517 (716)
Q Consensus       511 s~~~~v~  517 (716)
                      ++.+.|.
T Consensus        92 ~~~l~V~   98 (100)
T d1qz1a3          92 SIHLKVF   98 (100)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8877764

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.7e-10  Score=89.86  Aligned_cols=91  Identities=19%  Similarity=0.311  Sum_probs=71.4

Q ss_pred             CC-CCCCCCeEEeEEeCCeEEEEEECCCCC-CCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEE
Q psy7040         222 KP-SPPGGPLKVSNVHAEGVTLDWKVPDDD-GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVR  299 (716)
Q Consensus       222 ~p-~~p~~~~~~~~~~~~~~~l~W~~p~~~-~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~  299 (716)
                      .| .+|.+ +.+.....+++.|+|++|... .+..+.+|.|+++..+...+.......+....+.|.+|.|++.|.|+|+
T Consensus        10 ~P~~~P~~-v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   88 (119)
T d1x5ha1          10 VPSAAPQN-LSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVA   88 (119)
T ss_dssp             SCCCCCEE-EEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEECE
T ss_pred             CCCCCCcC-eEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCEEEEEEE
Confidence            45 35666 788888899999999987422 2236899999998776665555544556778999999999999999999


Q ss_pred             EEcCCCCCCCCccc
Q psy7040         300 AVNKQGKSEPLTTT  313 (716)
Q Consensus       300 a~n~~g~~~~~~~~  313 (716)
                      |.|..|.|.++...
T Consensus        89 A~n~~G~G~~S~~~  102 (119)
T d1x5ha1          89 ALTINGTGPATDWL  102 (119)
T ss_dssp             EEETTEEEEECCCE
T ss_pred             EEcCCcCCCCCCCE
Confidence            99999988776654

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.5e-09  Score=81.29  Aligned_cols=84  Identities=20%  Similarity=0.279  Sum_probs=69.8

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCC--CeEEEEECCCCCCCceeEEEEEEcCCCce-e
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD--KSTKLKVFDSKRGDSGIYTLAVKNSWGTD-K  509 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-~  509 (716)
                      +.++.+..|+.+.|.|.+.+.|.+.+.|++++..+.......+....  ....|.|.++.+.|.|.|+|.|.|..|.. +
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            45688999999999999999999999999999998777665554433  34579999999999999999999999975 4


Q ss_pred             eEEEEEE
Q psy7040         510 GTAKVTV  516 (716)
Q Consensus       510 ~s~~~~v  516 (716)
                      ..+.+.|
T Consensus        83 ~~~~l~V   89 (91)
T d1rhfa1          83 QPVWLTV   89 (91)
T ss_dssp             CCEEEEE
T ss_pred             EEEEEEE
Confidence            4566554

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.9e-10  Score=86.76  Aligned_cols=91  Identities=19%  Similarity=0.176  Sum_probs=59.6

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCC--ccceEEEEEEcCCCCcEEEec----ccCCCeEEecCCCCCcEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGE--PLEGYLVEKYDPETGVWIPVG----KTREPEMDVTGLTPGHEYKFRVK  128 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~--~i~~y~v~~~~~~~~~~~~~~----~~~~~~~~i~~L~~~~~y~~~v~  128 (716)
                      +.||.+|.+...+.+++.|+|.+|...++.  ....|.|+|+..+...+....    ....+.+.|.+|.|++.|.|||+
T Consensus         2 P~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVr   81 (101)
T d1iarb2           2 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVR   81 (101)
T ss_dssp             CCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEEE
T ss_pred             cccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEEE
Confidence            456667888899999999999988654432  244699999887765554322    12236789999999999999999


Q ss_pred             EEecCccCCCccccceE
Q psy7040         129 ALNKEGESEPLETFSSI  145 (716)
Q Consensus       129 a~~~~g~~~~s~~~~~~  145 (716)
                      |.+..|.|.+|+.+..+
T Consensus        82 A~~~~g~g~wSewS~~v   98 (101)
T d1iarb2          82 AWAQAYNTTWSEWSPST   98 (101)
T ss_dssp             EECGGGTCCCCCCCCCE
T ss_pred             EEcCCCCCCCcCCCCCE
Confidence            99999988877665443

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.2e-09  Score=89.26  Aligned_cols=93  Identities=20%  Similarity=0.203  Sum_probs=73.5

Q ss_pred             CCCceEEEEeCCeEEEEecCCCCCCCC--------ccceEEEEEEcCC-CCcEEEecccCCCeEEecCCCCCcEEEEEEE
Q psy7040          58 EGPLEVSNIHKDGCTLKWNKPKDDGGE--------PLEGYLVEKYDPE-TGVWIPVGKTREPEMDVTGLTPGHEYKFRVK  128 (716)
Q Consensus        58 ~~~l~~~~~~~~s~~l~W~~p~~~~~~--------~i~~y~v~~~~~~-~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~  128 (716)
                      +.++.+.+++.+++.|+|++|...++.        .+..|.+.++..+ ...|..+.....++++|.||+|++.|.|+|+
T Consensus        21 ~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~P~t~Y~f~V~  100 (137)
T d1wk0a_          21 IVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQ  100 (137)
T ss_dssp             CCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESCSEEEECSCCTTCEECEEEE
T ss_pred             CCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEEEecCccEEEECCCCCCcEEEEEEE
Confidence            344578899999999999998754432        4667999887655 3455666666678999999999999999999


Q ss_pred             EEecCccCCCccccceEEecCC
Q psy7040         129 ALNKEGESEPLETFSSIIARDP  150 (716)
Q Consensus       129 a~~~~g~~~~s~~~~~~~~~~p  150 (716)
                      |.|..|.+.++......+...+
T Consensus       101 A~n~~G~g~~S~~~~~~T~~~~  122 (137)
T d1wk0a_         101 AEYNSIKGTPSEAEIFTTLSCE  122 (137)
T ss_dssp             EEETTEECCCCCCCCEECCCSS
T ss_pred             EEcCCcccCCCCCEEEECCCCC
Confidence            9999999999887777665443

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=1.9e-09  Score=83.02  Aligned_cols=88  Identities=23%  Similarity=0.364  Sum_probs=68.6

Q ss_pred             CCCCCCCcEEE----eeeCCeEEEEecCCCC---CCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEE
Q psy7040         324 QPGKPGTPEIK----DFDTDFVELAWTPPEQ---NGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE  396 (716)
Q Consensus       324 ~p~~p~~~~~~----~~~~~~i~l~W~~p~~---~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~  396 (716)
                      .|.+|.++.+.    ....+.+.|+|++|..   +.+..+..|+|+++..+...|.....  ...+.+.+.+|.+++.|.
T Consensus         2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~   79 (103)
T d1f6fb2           2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFT--GHQTQFKVFDLYPGQKYL   79 (103)
T ss_dssp             CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEE--ETCSEEEECCCCTTCEEE
T ss_pred             CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeecc--cceeEEEeCCCCcceEEE
Confidence            37788888775    3456789999999753   33456789999999988787876543  456799999999999999


Q ss_pred             EEEEEEeCCCC-CCCCCC
Q psy7040         397 FRVLAVNKGGP-GEPSDP  413 (716)
Q Consensus       397 ~~v~a~n~~g~-~~~s~~  413 (716)
                      |+|+|.+..|. |++|..
T Consensus        80 ~rVra~~~~G~wS~wS~~   97 (103)
T d1f6fb2          80 VQTRCKPDHGYWSRWSQE   97 (103)
T ss_dssp             EEEEEEESSSCCCCCCCC
T ss_pred             EEEEEEeCCCCCCCCcCc
Confidence            99999999884 666554

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-09  Score=81.62  Aligned_cols=80  Identities=14%  Similarity=0.301  Sum_probs=67.2

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  405 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~  405 (716)
                      .+|.++++...+.+++.|+|.+|..    .+.+|+|++...++..+. ..........+.|.+|.|++.|.|+|+|.|..
T Consensus         3 spP~~l~v~~~~~~si~v~W~~p~~----~~~~Y~i~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   77 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWRTKTE----TITGFQVDAVPANGQTPI-QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDN   77 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEECCSS----CCCCEEEEEEESSSSCCE-EEECCTTCSEEEEESCCTTCEEEEEEEEEETT
T ss_pred             CcCCCCEEEEecCCEEEEEEECCCC----CCceeEEEEEEccCCceE-EEecCCCccEEEeCCCCCCcEEEEEEEEEeCC
Confidence            4688999999999999999998642    588999999987755444 33456778899999999999999999999999


Q ss_pred             CCCCC
Q psy7040         406 GPGEP  410 (716)
Q Consensus       406 g~~~~  410 (716)
                      |.|.+
T Consensus        78 g~s~p   82 (90)
T d1fnha2          78 ARSSP   82 (90)
T ss_dssp             EECCC
T ss_pred             CCcCC
Confidence            98754

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.5e-10  Score=87.98  Aligned_cols=90  Identities=14%  Similarity=0.279  Sum_probs=67.9

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCC-CCCccceEEEEEEcCCCCcEEEec------ccCCCeEEecCCCCCcEEEEEEE
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDD-GGEPLEGYLVEKYDPETGVWIPVG------KTREPEMDVTGLTPGHEYKFRVK  128 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~-~~~~i~~y~v~~~~~~~~~~~~~~------~~~~~~~~i~~L~~~~~y~~~v~  128 (716)
                      .||.++.+...+.+++.|+|++|... .++++.+|+|.|+..+...+....      ......+.|.+|.|++.|.|+|+
T Consensus        10 ~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   89 (109)
T d1va9a1          10 GPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQ   89 (109)
T ss_dssp             SCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEE
T ss_pred             CCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEEEEEE
Confidence            35556778899999999999987543 346799999999866543322111      11236899999999999999999


Q ss_pred             EEecCccCCCccccceE
Q psy7040         129 ALNKEGESEPLETFSSI  145 (716)
Q Consensus       129 a~~~~g~~~~s~~~~~~  145 (716)
                      |.|..|.|.+|......
T Consensus        90 a~n~~G~g~~S~~v~~~  106 (109)
T d1va9a1          90 AFNRAGTGPSSSEINAT  106 (109)
T ss_dssp             EEETTEECCCCCCEECC
T ss_pred             EEcCCcCCCCCCCEEEE
Confidence            99999999888665543

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.4e-10  Score=90.71  Aligned_cols=99  Identities=30%  Similarity=0.473  Sum_probs=76.5

Q ss_pred             EEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCC--CeEEccccCcccceEEEcCCCCCCe
Q psy7040         216 EVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG--RWTPAGETEGPVTGLEVEGLIPNHK  293 (716)
Q Consensus       216 ~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~--~~~~~~~~~~~~~~~~i~~L~p~~~  293 (716)
                      ...+.+.|.+|.+ +.+.....+++.|+|++|.. ++.++..|.++++.....  .|..... ......+.+.+|.+++.
T Consensus        10 ~~~v~d~P~~P~~-~~v~~~~~~sv~l~W~~p~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~   86 (127)
T d1ueya_          10 PAPVYDVPNPPFD-LELTDQLDKSVQLSWTPGDD-NNSPITKFIIEYEDAMHKPGLWHHQTE-VSGTQTTAQLNLSPYVN   86 (127)
T ss_dssp             CCCCCCSCCCCEE-EEEECCSSSCEEEEEECCCC-CSSCEEEEEEEEEBTTTCTTCEEEEEE-EESSCCEEEECCCTTCE
T ss_pred             cccccccCcCCCC-cEEEEecCCeEEEEEeCCcc-cccceEeeeeeeccccccceeEEEEee-cCCceEEEECCCccCCE
Confidence            3456678999988 88999999999999997765 444788999998866433  3333322 24567899999999999


Q ss_pred             EEEEEEEEcCCCCCCCCcccceEE
Q psy7040         294 YKFRVRAVNKQGKSEPLTTTASIE  317 (716)
Q Consensus       294 y~~~v~a~n~~g~~~~~~~~~~~~  317 (716)
                      |.|+|+|.|..|.+.++..+..+.
T Consensus        87 Y~frV~A~n~~G~s~~S~~s~~~~  110 (127)
T d1ueya_          87 YSFRVMAVNSIGKSLPSEASEQYL  110 (127)
T ss_dssp             ECCEEEEEESSCBCCCCSCCCCEE
T ss_pred             EEEEEEEEcCCcCcCCcCCcccEE
Confidence            999999999999998887664444

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.8e-10  Score=90.03  Aligned_cols=103  Identities=22%  Similarity=0.371  Sum_probs=77.4

Q ss_pred             CCCCCCCCeEEe--EEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc--CcccceEEEcCCCCCCeEEEE
Q psy7040         222 KPSPPGGPLKVS--NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET--EGPVTGLEVEGLIPNHKYKFR  297 (716)
Q Consensus       222 ~p~~p~~~~~~~--~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~~~y~~~  297 (716)
                      +|.+|.+ +.+.  .....++.|+|.+|...++ .+..|.|+++......|......  .+....+.|.+|.+++.|.|+
T Consensus         4 kP~pP~~-~~v~~~~~~~~si~v~W~~p~~~~~-~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~   81 (115)
T d1bqua2           4 KPNPPHN-LSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR   81 (115)
T ss_dssp             ECCCCEE-EEEECC--CCSCEEEEEECCGGGGT-SCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEE
T ss_pred             ECCCCCC-CEEEEeccCCCEEEEEEeecccccc-ceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEE
Confidence            5778876 6665  4567889999998776554 68899999998887777654432  356789999999999999999


Q ss_pred             EEEEcCCCCCCCCcccceEEecCCCCCCC
Q psy7040         298 VRAVNKQGKSEPLTTTASIEAKNPFNQPG  326 (716)
Q Consensus       298 v~a~n~~g~~~~~~~~~~~~~~~~~~~p~  326 (716)
                      |+|.|..|.+.++..+....+.++..+|.
T Consensus        82 V~a~~~~G~g~~S~~S~~~~~~T~~~~P~  110 (115)
T d1bqua2          82 IRCMKEDGKGYWSDWSEEASGITYEDRPS  110 (115)
T ss_dssp             EEEEETTSCSCCCCCCCCEEEEECCCHHH
T ss_pred             EEEEeCCCccCCcCCcCCEEEECCCCCCC
Confidence            99999999887776665555555444443

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=1.1e-09  Score=82.55  Aligned_cols=81  Identities=19%  Similarity=0.301  Sum_probs=66.0

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEe--eecCCCCeEEecCCCCCCeEEEEEEEEeC
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCA--QTEGDTPKGKVLDLIEGNQYEFRVLAVNK  404 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~  404 (716)
                      +|.++.+...+.+++.|+|.+|..    .+.+|.|+|+......+....  .......++.|.+|.|++.|.|+|.|.|.
T Consensus         3 aP~~l~v~~~~~~sv~v~W~~p~~----~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   78 (92)
T d1tdqa2           3 APKNLRVGSRTATSLDLEWDNSEA----EAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMN   78 (92)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCSS----CCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEET
T ss_pred             cCcCCEEEEecCCEEEEEEEecCC----cccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEeC
Confidence            578999999999999999998642    588999999987655444332  23556678999999999999999999999


Q ss_pred             CCCCCCC
Q psy7040         405 GGPGEPS  411 (716)
Q Consensus       405 ~g~~~~s  411 (716)
                      .|.|.++
T Consensus        79 ~g~s~p~   85 (92)
T d1tdqa2          79 SKQSIPA   85 (92)
T ss_dssp             TEECCCE
T ss_pred             CCEecCE
Confidence            9988654

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-09  Score=82.11  Aligned_cols=83  Identities=16%  Similarity=0.236  Sum_probs=65.3

Q ss_pred             CCCCCCcEEEeeeCC-eEEEEecCCCCCCCccceEEEEEEeecCCCc-eEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         325 PGKPGTPEIKDFDTD-FVELAWTPPEQNGGSPIVGYIIEKKEKYSPI-WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       325 p~~p~~~~~~~~~~~-~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      +.+|.++.+....++ .+.|+|++|..   ..+.+|+|+|+..++.. ............++.|.+|.|++.|.|+|.|.
T Consensus         2 ~~PP~~l~v~~~~~ts~i~v~W~~p~~---~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~   78 (94)
T d1fnfa1           2 LSPPTNLHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTV   78 (94)
T ss_dssp             CCCCEEEEEEECSSSSCEEEEEECCSC---SSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEEE
T ss_pred             CCcCcCcEEEEecCCCEEEEEeeCCCC---CCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEEE
Confidence            457899999887654 59999998643   24899999999765433 23444456778899999999999999999999


Q ss_pred             eCCCCCCC
Q psy7040         403 NKGGPGEP  410 (716)
Q Consensus       403 n~~g~~~~  410 (716)
                      +..|.|.+
T Consensus        79 ~~~g~s~p   86 (94)
T d1fnfa1          79 KDDKESVP   86 (94)
T ss_dssp             ETTEECCC
T ss_pred             cCCCEeCC
Confidence            99887643

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.3e-10  Score=93.01  Aligned_cols=91  Identities=22%  Similarity=0.340  Sum_probs=68.6

Q ss_pred             CCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCce-------EE-E-------eeecCCCCeEEe
Q psy7040         322 FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW-------EK-C-------AQTEGDTPKGKV  386 (716)
Q Consensus       322 ~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~-------~~-~-------~~~~~~~~~~~i  386 (716)
                      ...|++|.++.+.. ..+++.|+|.+|..+++ +|.+|.|+|+......+       .. .       .........+.|
T Consensus         5 ~~~P~aP~~v~v~~-~~~si~l~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (123)
T d1wfta_           5 SSGPGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAH   82 (123)
T ss_dssp             SSCCCCCEEEEEEE-CSSEEEEEEECCSSCCS-SCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCC
T ss_pred             CCCCcCCcccEEEe-CCCEEEEEecCchhcCC-ceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEE
Confidence            46789999999864 67899999999887655 89999999976553221       11 0       011223356678


Q ss_pred             cCCCCCCeEEEEEEEEeCCCCCCCCCCC
Q psy7040         387 LDLIEGNQYEFRVLAVNKGGPGEPSDPT  414 (716)
Q Consensus       387 ~~l~~~~~Y~~~v~a~n~~g~~~~s~~~  414 (716)
                      .+|.+++.|.|+|+|.|..|.|+++...
T Consensus        83 ~~L~p~t~Y~frV~A~N~~G~Gp~S~~~  110 (123)
T d1wfta_          83 IDYTSRPAIVFRISAKNEKGYGPATQIR  110 (123)
T ss_dssp             CBCSSSCEEEEEEEEBSSSSBCCCEEEE
T ss_pred             cCCCCCCEEEEEEEEecCCcCCCCCCcE
Confidence            8999999999999999999999877643

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.6e-10  Score=84.88  Aligned_cols=84  Identities=13%  Similarity=0.017  Sum_probs=69.7

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEe
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  403 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n  403 (716)
                      +|.+|.++++...+..++.|+|.+|.. ++ ...+|.|.++..+...+............+.+.+|.+++.|.|+|+|.|
T Consensus         3 PP~~P~n~~~~~~~~~si~~~W~p~~~-~~-~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N   80 (95)
T d1bqua1           3 PPEKPKNLSCIVNEGKKMRCEWDGGRE-TH-LETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAEN   80 (95)
T ss_dssp             CCCCCEEEEEEEETTSCCEEEEECCSC-CS-SCCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEE
T ss_pred             CcCCCeeeEEEEccCCEEEEEEeCccc-CC-CceEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEEEe
Confidence            588999999999999999999999754 34 3578999999877555555555566667788889999999999999999


Q ss_pred             CCCCCC
Q psy7040         404 KGGPGE  409 (716)
Q Consensus       404 ~~g~~~  409 (716)
                      ..|.+.
T Consensus        81 ~~G~s~   86 (95)
T d1bqua1          81 ALGKVT   86 (95)
T ss_dssp             TTEEEE
T ss_pred             CCcccc
Confidence            999875

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.96  E-value=2.3e-09  Score=79.43  Aligned_cols=79  Identities=16%  Similarity=0.206  Sum_probs=65.6

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  406 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g  406 (716)
                      +|.++.+...+.+++.|+|.+|..    .+.+|.|+|+..+...+  .........++.|.+|.|++.|.|+|.|++..|
T Consensus         2 aP~~l~v~~~t~~sv~v~W~~p~~----~~~~Y~v~~~~~~~~~~--~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~   75 (87)
T d1qr4a1           2 NPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKKN--EMEIPVDSTSFILRGLDAGTEYTISLVAEKGRH   75 (87)
T ss_dssp             CCEEEEEESCCSSEEEEEEECCSS----CCSEEEEEEECTTCCEE--EEEECTTCSEEEEESCCSSCEEEEEEEEESSSC
T ss_pred             cCcCcEEEEecCCEEEEEEECCCC----CcceeEEEeecCCccee--EEeCCCCcCEEEECCCCcCCEEEEEEEEEcCCC
Confidence            588999999999999999998642    47899999988764332  234467788999999999999999999999999


Q ss_pred             CCCCC
Q psy7040         407 PGEPS  411 (716)
Q Consensus       407 ~~~~s  411 (716)
                      .|.++
T Consensus        76 ~s~~~   80 (87)
T d1qr4a1          76 KSKPT   80 (87)
T ss_dssp             BCCCE
T ss_pred             CccCE
Confidence            87654

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.1e-09  Score=81.45  Aligned_cols=97  Identities=13%  Similarity=0.045  Sum_probs=73.9

Q ss_pred             CCCCCCcEEEeeeCCeEEEEecCCCCCC-CccceEEEEEEeecCCC-ceEEEeeecCCCCeEEecCCCCCCeEEEEEEEE
Q psy7040         325 PGKPGTPEIKDFDTDFVELAWTPPEQNG-GSPIVGYIIEKKEKYSP-IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  402 (716)
Q Consensus       325 p~~p~~~~~~~~~~~~i~l~W~~p~~~~-~~~i~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~  402 (716)
                      +.+|.++++..++.+++.|+|.+|.... ...+..|.+.++..+.. .+............+.|.+|+|++.|.|+|+|.
T Consensus         3 l~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~   82 (104)
T d2b5ib2           3 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVK   82 (104)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEEEE
T ss_pred             cCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEEEE
Confidence            6789999999999999999999876543 23456888888766532 222333445678889999999999999999999


Q ss_pred             eCCCC-CCCCCCCCceEeec
Q psy7040         403 NKGGP-GEPSDPTAPHIARA  421 (716)
Q Consensus       403 n~~g~-~~~s~~~~~~~~~~  421 (716)
                      |..|. |.+|+.+..+...+
T Consensus        83 ~~~g~~g~wS~wS~~v~~~T  102 (104)
T d2b5ib2          83 PLQGEFTTWSPWSQPLAFRT  102 (104)
T ss_dssp             ESCCSSCCCCCCCCCEEEEC
T ss_pred             ECCCCCCCCCCCcCCEEEEC
Confidence            99884 66777776655543

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.9e-09  Score=88.12  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=76.8

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCCCCCc--------cceEEEEEEeecCCC-ceEEEeeecCCCCeEEecCCCCCCe
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGS--------PIVGYIIEKKEKYSP-IWEKCAQTEGDTPKGKVLDLIEGNQ  394 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~--------~i~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~  394 (716)
                      .|..+....+..++.+++.|+|.+|...++.        .+..|.+.++..... .|...  ......++.|.+|.|++.
T Consensus        17 ~~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~--~~~~~~~~~i~~L~P~t~   94 (137)
T d1wk0a_          17 LLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSV--YVGEETNITLNDLKPAMD   94 (137)
T ss_dssp             HTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEE--EEESCSEEEECSCCTTCE
T ss_pred             CCCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEE--EecCccEEEECCCCCCcE
Confidence            3555666788899999999999998655442        356788888765532 33332  345678899999999999


Q ss_pred             EEEEEEEEeCCCCCCCCCCCCceEeecCCCCC
Q psy7040         395 YEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP  426 (716)
Q Consensus       395 Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P  426 (716)
                      |.|+|+|.|..|.|.+|....+.+....+.+|
T Consensus        95 Y~f~V~A~n~~G~g~~S~~~~~~T~~~~P~~p  126 (137)
T d1wk0a_          95 YHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIP  126 (137)
T ss_dssp             ECEEEEEEETTEECCCCCCCCEECCCSSSCCC
T ss_pred             EEEEEEEEcCCcccCCCCCEEEECCCCCCCCC
Confidence            99999999999999999888777765554443

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.95  E-value=2.9e-09  Score=83.11  Aligned_cols=93  Identities=23%  Similarity=0.239  Sum_probs=70.4

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc----CC---------cEEEEeCCCeEEEEECCCCC
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS----KD---------RFKIVNDDKSTKLKVFDSKR  491 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~----~~---------~~~~~~~~~~~~l~i~~l~~  491 (716)
                      .|.+....+.++.+..|+.+.|.|.+.+.|.+.+.|++++.....    ..         ............|.|.++.+
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            566665567789999999999999999999999999987543211    00         01111122356799999999


Q ss_pred             CCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         492 GDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       492 ~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .|.|.|+|.|.|..|....++.+.|.
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            99999999999999999998888763

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.95  E-value=6.1e-10  Score=84.46  Aligned_cols=81  Identities=26%  Similarity=0.359  Sum_probs=68.0

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcE-EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF-KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      ..+..|+.+.|.|.+.|.|.+.+.|++++..+....++ ..........|.|.++...|.|.|+|.|.|..|....++.+
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            56889999999999999999999999999988654432 22223345689999999999999999999999998888887


Q ss_pred             EE
Q psy7040         515 TV  516 (716)
Q Consensus       515 ~v  516 (716)
                      .|
T Consensus        95 ~V   96 (97)
T d3dara1          95 DV   96 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2e-09  Score=82.65  Aligned_cols=82  Identities=13%  Similarity=0.269  Sum_probs=63.1

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcE----------EEecccCCCeEEecCCCCCcEEEE
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW----------IPVGKTREPEMDVTGLTPGHEYKF  125 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~----------~~~~~~~~~~~~i~~L~~~~~y~~  125 (716)
                      +++.+|.+.+++.+++.|+|++|.    .++.+|.|++.......+          .........+++|.+|+|++.|.|
T Consensus         5 p~~~~l~v~~~t~~sv~v~W~pp~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~   80 (101)
T d2cuia1           5 PRLSQLSVTDVTTSSLRLNWEAPP----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSL   80 (101)
T ss_dssp             CCCCCCEEESCCSSCEEEECCCCT----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCEEEE
T ss_pred             cCCCCcEEEEECCCEEEEEEEecc----ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCEEEE
Confidence            445679999999999999999874    348999999986543322          111123347899999999999999


Q ss_pred             EEEEEecCccCCCccc
Q psy7040         126 RVKALNKEGESEPLET  141 (716)
Q Consensus       126 ~v~a~~~~g~~~~s~~  141 (716)
                      +|+|.|..|.+.++..
T Consensus        81 ~V~a~~~~g~g~~~~~   96 (101)
T d2cuia1          81 TLYGLRGPHKADSIQG   96 (101)
T ss_dssp             EEEEECSSSEEEEEEE
T ss_pred             EEEEEeCCcEeCCeEE
Confidence            9999999998876543

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=2.5e-09  Score=78.90  Aligned_cols=80  Identities=20%  Similarity=0.193  Sum_probs=66.2

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  405 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~  405 (716)
                      .+|.++.+...+.+++.|+|.+|..    .+.+|.|+++..+...+..  .......++.|.+|.|++.|.|+|.|.+..
T Consensus         2 ~~P~nl~v~~~~~~s~~l~W~~p~~----~~~~Y~v~~~~~~~~~~~~--~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~   75 (86)
T d1tdqa3           2 DSPRDLMVTASSETSISLIWTKASG----PIDHYRITFTPSSGISSEV--TVPRDRTSYTLTDLEPGAEYIISITAERGR   75 (86)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCCS----CCSEEEEEEECSSSCCEEE--EEESSCSEEEECCCCTTCCEEEEEEEEETT
T ss_pred             ccCCCCEEEEecCCEEEEEEeCCCC----CccceEEEEecccccceEE--EeCCCccEEEECCCccccEEEEEEEEEcCC
Confidence            3688999999999999999999642    5889999999776444332  345678899999999999999999999999


Q ss_pred             CCCCCC
Q psy7040         406 GPGEPS  411 (716)
Q Consensus       406 g~~~~s  411 (716)
                      |.|.++
T Consensus        76 ~~s~p~   81 (86)
T d1tdqa3          76 QQSLES   81 (86)
T ss_dssp             EECCCE
T ss_pred             CEECCE
Confidence            887654

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=2.5e-09  Score=79.65  Aligned_cols=81  Identities=21%  Similarity=0.302  Sum_probs=66.6

Q ss_pred             cccccEEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040         431 DQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       431 ~~~~~~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~  509 (716)
                      ..+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.......  .   ...|.|.++...|.|.|+|.|.|..|...
T Consensus         7 ~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~--~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~   81 (89)
T d1gl4b_           7 EEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD--F---NGILTIRNVQPSDAGTYVCTGSNMFAMDQ   81 (89)
T ss_dssp             CSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE--E---TTEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             cCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe--e---ceEEEEecCCcccCEEEEEEEEECCCEEE
Confidence            345568899999999999996 67889999999987765543221  1   23799999999999999999999999988


Q ss_pred             eEEEEEE
Q psy7040         510 GTAKVTV  516 (716)
Q Consensus       510 ~s~~~~v  516 (716)
                      .++.+.|
T Consensus        82 ~~~~l~V   88 (89)
T d1gl4b_          82 GTATLHV   88 (89)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8887766

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.8e-09  Score=87.71  Aligned_cols=87  Identities=26%  Similarity=0.435  Sum_probs=72.8

Q ss_pred             cccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc-----------------------------CCcEEEEeCCCe
Q psy7040         431 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-----------------------------KDRFKIVNDDKS  481 (716)
Q Consensus       431 ~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~-----------------------------~~~~~~~~~~~~  481 (716)
                      ..+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+..                             ..++.+......
T Consensus        14 ~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   93 (130)
T d1gxea_          14 RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDR   93 (130)
T ss_dssp             CCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTE
T ss_pred             CCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCE
Confidence            445678999999999999999999999999987655431                             223555666677


Q ss_pred             EEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       482 ~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      ..|.|.++...|.|.|+|.|.|..|....++.+.|.
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          94 SIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            899999999999999999999999999888887763

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.3e-09  Score=86.27  Aligned_cols=96  Identities=21%  Similarity=0.261  Sum_probs=73.2

Q ss_pred             CCCCCCCcEEEeeeCCeEEEEecCCCC-CCCccceEEEEEEeecCCCc-------eEEEeeecCCCCeEEecCCCCCCeE
Q psy7040         324 QPGKPGTPEIKDFDTDFVELAWTPPEQ-NGGSPIVGYIIEKKEKYSPI-------WEKCAQTEGDTPKGKVLDLIEGNQY  395 (716)
Q Consensus       324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~-~~~~~i~~y~v~~~~~~~~~-------~~~~~~~~~~~~~~~i~~l~~~~~Y  395 (716)
                      ++.+|.++.+...+.++|.|+|.+|.. ..++.+..|.+.+.......       ............++.|.+|.|++.|
T Consensus        14 P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y   93 (125)
T d1uena_          14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHY   93 (125)
T ss_dssp             CCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCEE
T ss_pred             CCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCCEE
Confidence            345789999999999999999998653 23457888988887544211       1122234567789999999999999


Q ss_pred             EEEEEEEeCCCCCCCCCCCCceEe
Q psy7040         396 EFRVLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       396 ~~~v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      .|+|+|.|..|.|.+|....+.+.
T Consensus        94 ~~~V~A~n~~G~g~~S~~~~~~T~  117 (125)
T d1uena_          94 TLNVRVVNGKGEGPASPDRVFNTP  117 (125)
T ss_dssp             EEEEEEEESSCEEEECCCEEEECC
T ss_pred             EEEEEEEeCCcccCCCCCEEEECC
Confidence            999999999999988876554443

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.8e-11  Score=92.33  Aligned_cols=94  Identities=21%  Similarity=0.317  Sum_probs=72.6

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEE--eeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKC--AQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      .+|..|.++.+..+..+++.|+|.+|..++| .|.+|+|+|+..+...+...  .........+.+.+|+++ .|.|+|+
T Consensus         3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~~~ng-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-tY~~rV~   80 (102)
T d2dtge1           3 KADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIR   80 (102)
T ss_dssp             CCCCCCCCCCCCSSSSSCCCCCCCCCCSCSS-CEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCC
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEEeCCCCcc-eEEEeeeEEEecCCCCceeeeeeecccceEEEEEecccee-eEEEEEE
Confidence            3566777888888899999999999876654 79999999987664333222  123456677999999997 5999999


Q ss_pred             EEeCCCCCCCCCCCCceE
Q psy7040         401 AVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       401 a~n~~g~~~~s~~~~~~~  418 (716)
                      |.|..|.|++|.+..+.+
T Consensus        81 A~n~~G~g~~S~~v~f~~   98 (102)
T d2dtge1          81 ATSLAGNGSWTEPTYFYV   98 (102)
T ss_dssp             EEETTBCCCCCCCCEECC
T ss_pred             EEcCCccCCCCCCEEEEc
Confidence            999999999987765543

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.92  E-value=3e-09  Score=80.49  Aligned_cols=84  Identities=20%  Similarity=0.217  Sum_probs=69.5

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcE--EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee-
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF--KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-  509 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~-  509 (716)
                      ..++.+..|+.+.|.|.+.+.|.+.+.|++++..+......  ..........|.|.++.+.|.|.|+|.|.|..|... 
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            35788999999999999999999999999999998655443  333444556899999999999999999999999764 


Q ss_pred             eEEEEEE
Q psy7040         510 GTAKVTV  516 (716)
Q Consensus       510 ~s~~~~v  516 (716)
                      .+..+.|
T Consensus        90 ~s~~L~V   96 (97)
T d1biha3          90 HSLKLTV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4666665

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.8e-09  Score=80.58  Aligned_cols=89  Identities=25%  Similarity=0.343  Sum_probs=64.9

Q ss_pred             CCCCCCCcEEE----eeeCCeEEEEecCCCCC---CCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEE
Q psy7040         324 QPGKPGTPEIK----DFDTDFVELAWTPPEQN---GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE  396 (716)
Q Consensus       324 ~p~~p~~~~~~----~~~~~~i~l~W~~p~~~---~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~  396 (716)
                      .|.+|.++.+.    ....+.+.|+|.+|...   .+..+..|.+.++..+...|....  ......+.|.+|.+++.|.
T Consensus         2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~   79 (104)
T d3d48r2           2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHF--AGQQTEFKILSLHPGQKYL   79 (104)
T ss_dssp             CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEE--EETCSEEEECC--CCCEEE
T ss_pred             CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeec--cccccEEEECCCCCCCEEE
Confidence            37788888875    34567899999997532   334567899999888766665543  3567789999999999999


Q ss_pred             EEEEEEeCCCC-CCCCCCC
Q psy7040         397 FRVLAVNKGGP-GEPSDPT  414 (716)
Q Consensus       397 ~~v~a~n~~g~-~~~s~~~  414 (716)
                      |+|+|.|..|. |++|...
T Consensus        80 ~rVrA~n~~G~ws~wS~~~   98 (104)
T d3d48r2          80 VQVRCKPDHGYWSAWSPAT   98 (104)
T ss_dssp             EEEEEEESSSCCCCCCCCE
T ss_pred             EEEEEEeCCCCCCCCcCCE
Confidence            99999999986 7777543

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.5e-09  Score=82.95  Aligned_cols=83  Identities=18%  Similarity=0.300  Sum_probs=66.6

Q ss_pred             eeCCeEEEEecCCCCCCCccceEEEEEEeecC----CCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCC
Q psy7040         336 FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY----SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  411 (716)
Q Consensus       336 ~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s  411 (716)
                      ++.++|.|+|++|..  ...|.+|+|+|+...    ...|...........++.|.+|.|++.|.|+|+|+|..|.|..|
T Consensus        27 ~s~tsi~v~W~~p~~--~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~S  104 (120)
T d1ujta_          27 LTPTTVQVTWTVDRQ--PQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDS  104 (120)
T ss_dssp             CBTTEEEEEEEESSC--CSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCCC
T ss_pred             eCCCeEEEEecCCCC--CCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcCCC
Confidence            578999999998753  337999999998654    23466655556678899999999999999999999999999998


Q ss_pred             CCCCceEee
Q psy7040         412 DPTAPHIAR  420 (716)
Q Consensus       412 ~~~~~~~~~  420 (716)
                      ......+.+
T Consensus       105 ~~~~~~T~e  113 (120)
T d1ujta_         105 ESKTVRTTE  113 (120)
T ss_dssp             CCEEEEECS
T ss_pred             CCEEEEeCC
Confidence            766555544

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=1.6e-09  Score=81.00  Aligned_cols=83  Identities=16%  Similarity=0.202  Sum_probs=68.0

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +.+..+.+|+.+.|.|.+.+.|.|.+.|++++..+.......+...++ ..|.|.++...|.|.|+|.|.|..|......
T Consensus         8 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~   86 (92)
T d1epfa2           8 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFK   86 (92)
T ss_dssp             CSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGGTEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEEECcCCEEEEE
Confidence            456889999999999999999999999999999887665544444433 3699999999999999999999887766555


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+.+
T Consensus        87 ~i~V   90 (92)
T d1epfa2          87 DIQV   90 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.3e-09  Score=79.15  Aligned_cols=80  Identities=20%  Similarity=0.250  Sum_probs=65.8

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  405 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~  405 (716)
                      .+|.++.+...+.+++.|+|.+|..    .+.+|.|.|+..+...+  .........++.|.+|.|++.|.|+|.|.|..
T Consensus         3 ~~P~~l~~~~~~~~sv~l~W~~p~~----~~~~Y~v~~~~~~~~~~--~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   76 (93)
T d2cuma1           3 EAPRDLEAKEVTPRTALLTWTEPPV----RPAGYLLSFHTPGGQTQ--EILLPGGITSHQLLGLFPSTSYNARLQAMWGQ   76 (93)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECCSS----CCSEEEEEEECTTSCEE--EEEECSSCSEEEECSCCTTCEEEEEEEEEBTT
T ss_pred             CcCCCCEEEEeCCCEEEEEEEcccc----ccccEEEEEEccccccE--EEEECCCccEEEEeCccCCCEEEEEEEEEeCC
Confidence            3678999999999999999998642    58899999988663322  33446778899999999999999999999999


Q ss_pred             CCCCCC
Q psy7040         406 GPGEPS  411 (716)
Q Consensus       406 g~~~~s  411 (716)
                      |.+.++
T Consensus        77 g~s~~~   82 (93)
T d2cuma1          77 SLLPPV   82 (93)
T ss_dssp             BCCCCE
T ss_pred             CCCCCE
Confidence            987654

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.6e-09  Score=79.69  Aligned_cols=91  Identities=19%  Similarity=0.280  Sum_probs=67.0

Q ss_pred             CCCCCCcEEEeee------CCeEEEEecCCCCC---CCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeE
Q psy7040         325 PGKPGTPEIKDFD------TDFVELAWTPPEQN---GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY  395 (716)
Q Consensus       325 p~~p~~~~~~~~~------~~~i~l~W~~p~~~---~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y  395 (716)
                      |.+|.++.+....      ..+|.|+|.+|...   .+..+..|.|+|+..++..|.....  .....+.|.+|.+++.|
T Consensus         1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~--~~~~~~~i~~L~~~t~Y   78 (106)
T d1axib2           1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDP--ILTTSVPVYSLKVDKEY   78 (106)
T ss_dssp             CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCC--BSSSEEEEEEEETTSCE
T ss_pred             CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeee--cccceEEECCCCCCCEE
Confidence            6678888775432      34699999998542   3345778999999988888876553  45679999999999999


Q ss_pred             EEEEEEEeCCCCCCCCCCCCceE
Q psy7040         396 EFRVLAVNKGGPGEPSDPTAPHI  418 (716)
Q Consensus       396 ~~~v~a~n~~g~~~~s~~~~~~~  418 (716)
                      .|+|+|.+..| +.+++.+..+.
T Consensus        79 ~frVRa~~~~~-g~ws~wS~~v~  100 (106)
T d1axib2          79 EVRVRSKQRNS-GNYGEFSEVLY  100 (106)
T ss_dssp             EEEEEEEETTS-SCCCCCCCCEE
T ss_pred             EEEEEEEECCC-CCCCCCCCCEE
Confidence            99999998644 34444444443

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.7e-09  Score=84.99  Aligned_cols=94  Identities=16%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             CCCCCCCceEEEEeCCeEEEEecCCCCC-CCCccceEEEEEEcCCCCc---------EEEecccCCCeEEecCCCCCcEE
Q psy7040          54 GLDPEGPLEVSNIHKDGCTLKWNKPKDD-GGEPLEGYLVEKYDPETGV---------WIPVGKTREPEMDVTGLTPGHEY  123 (716)
Q Consensus        54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~-~~~~i~~y~v~~~~~~~~~---------~~~~~~~~~~~~~i~~L~~~~~y  123 (716)
                      +..||.++++..++.++|.|+|++|... .+..+.+|.+.+.......         ...........+.|.+|.|++.|
T Consensus        14 P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y   93 (125)
T d1uena_          14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHY   93 (125)
T ss_dssp             CCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCEE
T ss_pred             CCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCCEE
Confidence            4456778999999999999999987532 2345888988876432211         12222333478999999999999


Q ss_pred             EEEEEEEecCccCCCccccceEEe
Q psy7040         124 KFRVKALNKEGESEPLETFSSIIA  147 (716)
Q Consensus       124 ~~~v~a~~~~g~~~~s~~~~~~~~  147 (716)
                      .|+|+|.|..|.+.+|......+.
T Consensus        94 ~~~V~A~n~~G~g~~S~~~~~~T~  117 (125)
T d1uena_          94 TLNVRVVNGKGEGPASPDRVFNTP  117 (125)
T ss_dssp             EEEEEEEESSCEEEECCCEEEECC
T ss_pred             EEEEEEEeCCcccCCCCCEEEECC
Confidence            999999999999988877666554

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=4.9e-10  Score=89.59  Aligned_cols=88  Identities=16%  Similarity=0.152  Sum_probs=62.7

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc-------E-EEecccC---------CCeEEecCCCC
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV-------W-IPVGKTR---------EPEMDVTGLTP  119 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-------~-~~~~~~~---------~~~~~i~~L~~  119 (716)
                      +|..+++.. +.+++.|+|++|..++| +|.+|.|+|+......       + .......         ...+.|.+|.+
T Consensus        10 aP~~v~v~~-~~~si~l~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p   87 (123)
T d1wfta_          10 APSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHIDYTS   87 (123)
T ss_dssp             CCEEEEEEE-CSSEEEEEEECCSSCCS-SCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCBCSS
T ss_pred             CCcccEEEe-CCCEEEEEecCchhcCC-ceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEcCCCC
Confidence            334466644 67899999999886555 7999999997654321       1 1111111         24567889999


Q ss_pred             CcEEEEEEEEEecCccCCCccccceEE
Q psy7040         120 GHEYKFRVKALNKEGESEPLETFSSII  146 (716)
Q Consensus       120 ~~~y~~~v~a~~~~g~~~~s~~~~~~~  146 (716)
                      ++.|.|||+|.|..|.+.++......+
T Consensus        88 ~t~Y~frV~A~N~~G~Gp~S~~~~~~t  114 (123)
T d1wfta_          88 RPAIVFRISAKNEKGYGPATQIRWLQG  114 (123)
T ss_dssp             SCEEEEEEEEBSSSSBCCCEEEEEECC
T ss_pred             CCEEEEEEEEecCCcCCCCCCcEEEEe
Confidence            999999999999999998876654444

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=9.7e-09  Score=79.21  Aligned_cols=97  Identities=19%  Similarity=0.099  Sum_probs=71.3

Q ss_pred             CCCCCCCCeEEeEEe-CCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEE
Q psy7040         222 KPSPPGGPLKVSNVH-AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA  300 (716)
Q Consensus       222 ~p~~p~~~~~~~~~~-~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a  300 (716)
                      +|.||.+ +.+.... ...+.|.|.+|....+..+..|.|+++..+...+..........+++.|.+|.+++.|.|+|+|
T Consensus         4 k~dPP~n-l~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRa   82 (105)
T d1erna2           4 LLDAPVG-LVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA   82 (105)
T ss_dssp             CCCCCEE-EEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEEE
T ss_pred             ccCCCCC-CEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEEE
Confidence            6888888 7777654 4569999998877666677899999988766655444444456689999999999999999999


Q ss_pred             EcC--CCCCCCCcccceEEec
Q psy7040         301 VNK--QGKSEPLTTTASIEAK  319 (716)
Q Consensus       301 ~n~--~g~~~~~~~~~~~~~~  319 (716)
                      .+.  .+.+.+|..+..+.+.
T Consensus        83 r~~~~~~~G~WSeWS~~v~~~  103 (105)
T d1erna2          83 RMAEPSFGGFWSAWSEPVSLL  103 (105)
T ss_dssp             EECSSSCCBCCCCCCCCEEEE
T ss_pred             EECCCCCCCCCCCCCCCEEee
Confidence            864  3445566666555544

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=9.3e-09  Score=76.46  Aligned_cols=80  Identities=11%  Similarity=0.152  Sum_probs=67.1

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      .+.+..|+.+.|.|.+.+.|.+.+.|++++.......   .........|.|.++...|.|.|+|.|.|..|..+.++.+
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v   86 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEE
Confidence            4567899999999999999999999999877654322   2334567789999999999999999999999999888888


Q ss_pred             EEE
Q psy7040         515 TVL  517 (716)
Q Consensus       515 ~v~  517 (716)
                      .+.
T Consensus        87 ~V~   89 (90)
T d1vcaa2          87 EIY   89 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            763

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.6e-09  Score=81.84  Aligned_cols=85  Identities=12%  Similarity=0.066  Sum_probs=69.1

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA  300 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a  300 (716)
                      .+|.+|.+ +++......++.|+|++|.. ++. ...|.|.++......|............+.+.+|.+++.|.|+|.|
T Consensus         2 ~PP~~P~n-~~~~~~~~~si~~~W~p~~~-~~~-~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A   78 (95)
T d1bqua1           2 LPPEKPKN-LSCIVNEGKKMRCEWDGGRE-THL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA   78 (95)
T ss_dssp             CCCCCCEE-EEEEEETTSCCEEEEECCSC-CSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEE
T ss_pred             cCcCCCee-eEEEEccCCEEEEEEeCccc-CCC-ceEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEE
Confidence            37889988 89999999999999998754 444 4789999988766555555544556677888899999999999999


Q ss_pred             EcCCCCCC
Q psy7040         301 VNKQGKSE  308 (716)
Q Consensus       301 ~n~~g~~~  308 (716)
                      .|..|.+.
T Consensus        79 ~N~~G~s~   86 (95)
T d1bqua1          79 ENALGKVT   86 (95)
T ss_dssp             EETTEEEE
T ss_pred             EeCCcccc
Confidence            99999874

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.9e-11  Score=91.22  Aligned_cols=90  Identities=22%  Similarity=0.290  Sum_probs=69.2

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEec----ccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG----KTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~----~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      .++|.++.+..++.+++.|+|++|..++| .|.+|+|+|+..+...+....    ......+.|.+|++++ |.|+|+|.
T Consensus         5 ~d~P~~v~~~~~~~~sv~l~W~pP~~~ng-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~~rV~A~   82 (102)
T d2dtge1           5 DDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRAT   82 (102)
T ss_dssp             CCCCCCCCCCSSSSSCCCCCCCCCCSCSS-CEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-ECCCCCEE
T ss_pred             CCCCCCCEEEEECCCEEEEEEEeCCCCcc-eEEEeeeEEEecCCCCceeeeeeecccceEEEEEeccceee-EEEEEEEE
Confidence            45677888888899999999999986555 599999999876644332211    1223679999999985 99999999


Q ss_pred             ecCccCCCccccceEE
Q psy7040         131 NKEGESEPLETFSSII  146 (716)
Q Consensus       131 ~~~g~~~~s~~~~~~~  146 (716)
                      |..|.|.+|....+.+
T Consensus        83 n~~G~g~~S~~v~f~~   98 (102)
T d2dtge1          83 SLAGNGSWTEPTYFYV   98 (102)
T ss_dssp             ETTBCCCCCCCCEECC
T ss_pred             cCCccCCCCCCEEEEc
Confidence            9999999887665544

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3e-10  Score=89.64  Aligned_cols=95  Identities=16%  Similarity=0.238  Sum_probs=68.1

Q ss_pred             CCCCCCCCCcEEEe-eeCCeEEEEecCCCCC-----CCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeE
Q psy7040         322 FNQPGKPGTPEIKD-FDTDFVELAWTPPEQN-----GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY  395 (716)
Q Consensus       322 ~~~p~~p~~~~~~~-~~~~~i~l~W~~p~~~-----~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y  395 (716)
                      ..+|.+|.++.+.. .+++++.|+|.+|..+     .+..+.+|.+++..   ..+........+...+.|.+|.+++.|
T Consensus         8 ~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~---~~~~~~~~~~~~~~~~~i~~L~~~t~Y   84 (117)
T d2cspa1           8 AGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKG---QRVAEVIFPTADSTAVELVRLRSLEAK   84 (117)
T ss_dssp             CCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSS---SEEEEECCTTCSEEEEESHHHHHHTCS
T ss_pred             CCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEeec---ccceeeeeeccceeeeeccCCCCCcEE
Confidence            35677899998854 5667999999997542     23456666665421   223333344556678889999999999


Q ss_pred             EEEEEEEeCCCCCCCCCCCCceEe
Q psy7040         396 EFRVLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       396 ~~~v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      .|+|+|+|..|.|..|......+.
T Consensus        85 ~v~V~A~n~~G~s~~S~~v~i~t~  108 (117)
T d2cspa1          85 GVTVRTLSAQGESVDSAVAAVPPE  108 (117)
T ss_dssp             CBEEEEEESSCCCCCCSCBCCCHH
T ss_pred             EEEEEEEcCCCcCCCCCCEEeeCC
Confidence            999999999999988877654443

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.4e-09  Score=83.95  Aligned_cols=68  Identities=13%  Similarity=0.072  Sum_probs=57.5

Q ss_pred             eccCcee----eEEEEeCCeEeeec----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS  703 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~  703 (716)
                      +.|.+.|    .+.|+++|+++..+          .......|.|.++...|+|.|+|.|.|..|..+.+..|.|..+|.
T Consensus        22 i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~  101 (105)
T d1wwca_          22 IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF  101 (105)
T ss_dssp             EEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCCC
T ss_pred             EEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeCCC
Confidence            5666767    99999999988654          122236799999999999999999999999999999999999887


Q ss_pred             CC
Q psy7040         704 AP  705 (716)
Q Consensus       704 ~p  705 (716)
                      |+
T Consensus       102 P~  103 (105)
T d1wwca_         102 PV  103 (105)
T ss_dssp             CS
T ss_pred             CC
Confidence            76

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=9.7e-10  Score=88.30  Aligned_cols=83  Identities=16%  Similarity=0.103  Sum_probs=65.7

Q ss_pred             CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc--------------eE---------EEeeecCCCC
Q psy7040         326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI--------------WE---------KCAQTEGDTP  382 (716)
Q Consensus       326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~--------------~~---------~~~~~~~~~~  382 (716)
                      ..|.++.+...+.++|.|+|++|...+++.|.+|.|+|+......              |.         ..........
T Consensus         3 s~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T d2dtge3           3 NELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP   82 (125)
T ss_dssp             CCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred             CCCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence            357899999999999999999987666678999999997654221              11         1112245678


Q ss_pred             eEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040         383 KGKVLDLIEGNQYEFRVLAVNKGGPG  408 (716)
Q Consensus       383 ~~~i~~l~~~~~Y~~~v~a~n~~g~~  408 (716)
                      ++.|.+|.|++.|.|+|+|+|..|.+
T Consensus        83 ~~~l~~L~p~T~Y~~~V~A~n~~G~~  108 (125)
T d2dtge3          83 GWLMRGLKPWTQYAIFVKTLVTFSDE  108 (125)
T ss_dssp             EEEECSCCSSCBCCBEEEECCCCCSS
T ss_pred             EEEECCCccCCEEEEEEEEEeCCCcc
Confidence            89999999999999999999999963

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=8.1e-09  Score=81.43  Aligned_cols=83  Identities=16%  Similarity=0.274  Sum_probs=65.4

Q ss_pred             EEeCCeEEEEecCCCCCCCCccceEEEEEEcCC----CCcEEEecc--cCCCeEEecCCCCCcEEEEEEEEEecCccCCC
Q psy7040          65 NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE----TGVWIPVGK--TREPEMDVTGLTPGHEYKFRVKALNKEGESEP  138 (716)
Q Consensus        65 ~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~----~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~  138 (716)
                      .++.++|.|+|++|..  ...|.+|+|.|+...    ...|.....  ...+++.|.||.|++.|.|+|+|.|..|.+..
T Consensus        26 ~~s~tsi~v~W~~p~~--~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~  103 (120)
T d1ujta_          26 VLTPTTVQVTWTVDRQ--PQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMD  103 (120)
T ss_dssp             CCBTTEEEEEEEESSC--CSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCC
T ss_pred             EeCCCeEEEEecCCCC--CCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcCC
Confidence            4678999999998863  346999999997543    235554433  34578999999999999999999999999999


Q ss_pred             ccccceEEecC
Q psy7040         139 LETFSSIIARD  149 (716)
Q Consensus       139 s~~~~~~~~~~  149 (716)
                      |......+..+
T Consensus       104 S~~~~~~T~e~  114 (120)
T d1ujta_         104 SESKTVRTTEE  114 (120)
T ss_dssp             CCCEEEEECSS
T ss_pred             CCCEEEEeCCC
Confidence            98777766543

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=5.5e-09  Score=80.08  Aligned_cols=84  Identities=12%  Similarity=0.238  Sum_probs=66.9

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc--------eEEEeeecCCCCeEEecCCCCCCe
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI--------WEKCAQTEGDTPKGKVLDLIEGNQ  394 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~--------~~~~~~~~~~~~~~~i~~l~~~~~  394 (716)
                      ++|.+|.++.+..++.+++.|+|.+|..    .+.+|.|++.......        ............++.|.+|+|++.
T Consensus         2 g~Pp~~~~l~v~~~t~~sv~v~W~pp~~----~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~   77 (101)
T d2cuia1           2 GSRPRLSQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTL   77 (101)
T ss_dssp             CCCCCCCCCEEESCCSSCEEEECCCCTT----SCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCE
T ss_pred             CCccCCCCcEEEEECCCEEEEEEEeccc----cccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCE
Confidence            4577899999999999999999998532    5889999998655221        112223456788999999999999


Q ss_pred             EEEEEEEEeCCCCCCC
Q psy7040         395 YEFRVLAVNKGGPGEP  410 (716)
Q Consensus       395 Y~~~v~a~n~~g~~~~  410 (716)
                      |.|+|+|+|..|.|.+
T Consensus        78 Y~~~V~a~~~~g~g~~   93 (101)
T d2cuia1          78 YSLTLYGLRGPHKADS   93 (101)
T ss_dssp             EEEEEEEECSSSEEEE
T ss_pred             EEEEEEEEeCCcEeCC
Confidence            9999999999998754

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.2e-08  Score=78.08  Aligned_cols=91  Identities=18%  Similarity=0.222  Sum_probs=73.3

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEec------cCCcEEEEeCCCeEEEEECCCC-CCCcee
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITII------SKDRFKIVNDDKSTKLKVFDSK-RGDSGI  496 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~------~~~~~~~~~~~~~~~l~i~~l~-~~~~~~  496 (716)
                      ||.|.. .+....+.+|+.+.|.|.+.+.|.+ .+.|++++....      ...++.+........|.|.++. ..|.|.
T Consensus         2 PP~i~~-~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           2 PPRVKA-VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             SCCCEE-SCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CceEEE-cCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            555542 3466789999999999999999987 799998753321      3445777777888899999998 579999


Q ss_pred             EEEEEEcCCCceeeEEEEEE
Q psy7040         497 YTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       497 y~~~a~n~~g~~~~s~~~~v  516 (716)
                      |+|.|.|..|.....+.+.|
T Consensus        81 Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEE
Confidence            99999999999988887776

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=9.4e-10  Score=88.39  Aligned_cols=80  Identities=19%  Similarity=0.212  Sum_probs=61.7

Q ss_pred             CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc--------------EEEe-----------cccCCCe
Q psy7040          57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV--------------WIPV-----------GKTREPE  111 (716)
Q Consensus        57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~--------------~~~~-----------~~~~~~~  111 (716)
                      ++-+|.+...+.++|.|+|++|...+++.|.+|.|+|+..+...              |...           .....++
T Consensus         4 ~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (125)
T d2dtge3           4 ELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPG   83 (125)
T ss_dssp             CBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCE
T ss_pred             CCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccCE
Confidence            45668888999999999999997666667999999987654321              1110           1112368


Q ss_pred             EEecCCCCCcEEEEEEEEEecCccC
Q psy7040         112 MDVTGLTPGHEYKFRVKALNKEGES  136 (716)
Q Consensus       112 ~~i~~L~~~~~y~~~v~a~~~~g~~  136 (716)
                      +.|.||+|++.|.|+|+|.|..|.+
T Consensus        84 ~~l~~L~p~T~Y~~~V~A~n~~G~~  108 (125)
T d2dtge3          84 WLMRGLKPWTQYAIFVKTLVTFSDE  108 (125)
T ss_dssp             EEECSCCSSCBCCBEEEECCCCCSS
T ss_pred             EEECCCccCCEEEEEEEEEeCCCcc
Confidence            9999999999999999999999853

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.3e-08  Score=78.50  Aligned_cols=88  Identities=18%  Similarity=0.237  Sum_probs=64.7

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCC-CccceEEEEEEcCCCC-cEE--EecccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGG-EPLEGYLVEKYDPETG-VWI--PVGKTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~-~~i~~y~v~~~~~~~~-~~~--~~~~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      +.||.+|.+..++.+++.|+|.+|....+ ..+..|+++++..+.. .+.  .........+.|.+|+|++.|.|+|+|.
T Consensus         3 l~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~   82 (104)
T d2b5ib2           3 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVK   82 (104)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEEEE
T ss_pred             cCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEEEE
Confidence            56888899999999999999998875433 3466788888765532 111  1222335789999999999999999999


Q ss_pred             ecCcc-CCCcccc
Q psy7040         131 NKEGE-SEPLETF  142 (716)
Q Consensus       131 ~~~g~-~~~s~~~  142 (716)
                      +..|. +.+|..+
T Consensus        83 ~~~g~~g~wS~wS   95 (104)
T d2b5ib2          83 PLQGEFTTWSPWS   95 (104)
T ss_dssp             ESCCSSCCCCCCC
T ss_pred             ECCCCCCCCCCCc
Confidence            98874 4444433

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.6e-09  Score=80.91  Aligned_cols=88  Identities=14%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             CCCCCCceEEEE--eCCeEEEEecCCCCC--CCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNI--HKDGCTLKWNKPKDD--GGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~--~~~s~~l~W~~p~~~--~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      +.||.+|.+..+  +.++|.|+|++|...  .+.....|.++++..+...|..+.....+.+.|.+|.+++.|.|||+|.
T Consensus         8 P~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~rVrA~   87 (109)
T d1uc6a_           8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAHTITDAYAGKEYIIQVAAK   87 (109)
T ss_dssp             CCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEESSCSEEEETTCCSSSCEEEEEECC
T ss_pred             CCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEeccCCceeEEeCCCCCCCEEEEEEEEE
Confidence            456666776654  567899999998642  3344678999999888888877776667899999999999999999998


Q ss_pred             ecCccCCCccccc
Q psy7040         131 NKEGESEPLETFS  143 (716)
Q Consensus       131 ~~~g~~~~s~~~~  143 (716)
                      +. +.+.+|..+.
T Consensus        88 ~~-~~g~wS~WS~   99 (109)
T d1uc6a_          88 DN-EIGTWSDWSV   99 (109)
T ss_dssp             BS-SSCCCCCCCE
T ss_pred             EC-CCCCcCCCCC
Confidence            75 3344444333

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.82  E-value=1.5e-09  Score=82.30  Aligned_cols=67  Identities=19%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA  704 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~  704 (716)
                      |.|.+.|    .+.|+++|+.+..+      .......|.|.++...|+|.|+|.|.|..|....++.|.|...+.|
T Consensus        21 l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~P   97 (97)
T d1koaa1          21 FYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP   97 (97)
T ss_dssp             EEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEECSCCC
T ss_pred             EEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEeecCCC
Confidence            5566665    89999999998775      2334468999999999999999999999999999999999875543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.2e-08  Score=76.48  Aligned_cols=79  Identities=14%  Similarity=0.236  Sum_probs=65.4

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +|.+.......+.+.+|..+.|.|.+. .|.+.+.|++++..+..+ ..+.+...++...|.|.++...|.|.|+|.|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            444444444557899999999999985 588899999999998754 557777778889999999999999999999977


Q ss_pred             C
Q psy7040         504 S  504 (716)
Q Consensus       504 ~  504 (716)
                      .
T Consensus        84 ~   84 (94)
T d1pd6a_          84 E   84 (94)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.1e-08  Score=75.52  Aligned_cols=79  Identities=14%  Similarity=0.129  Sum_probs=65.3

Q ss_pred             cccEEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      ...+.+..|+.+.|.|.+. +.|.+.+.|++.+..+.     ..........|.|.++...|.|.|+|.|.|..|....+
T Consensus        10 ~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s   84 (90)
T d1gsma1          10 EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG-----AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT   84 (90)
T ss_dssp             CSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC-----CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee-----eeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEE
Confidence            3457889999999999985 88999999998776542     12334456789999999999999999999999988888


Q ss_pred             EEEEE
Q psy7040         512 AKVTV  516 (716)
Q Consensus       512 ~~~~v  516 (716)
                      +.+.|
T Consensus        85 ~~l~V   89 (90)
T d1gsma1          85 VQLLV   89 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87765

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=5.2e-09  Score=79.92  Aligned_cols=89  Identities=15%  Similarity=0.097  Sum_probs=59.1

Q ss_pred             CCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCC
Q psy7040         328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP  407 (716)
Q Consensus       328 p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~  407 (716)
                      |.+|.+.. ..+++.|+|.+|....+..+..|.|+|+......+............+.|.+|.|++.|.|+|+|.+..|.
T Consensus         8 Pp~l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa~~~~g~   86 (100)
T d2gysa4           8 PPSLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTG   86 (100)
T ss_dssp             CCEEEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEEEECCTT
T ss_pred             CCccEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEEEECCCC
Confidence            44777764 55789999999877666567799999987664433222233456789999999999999999999987774


Q ss_pred             --CCCCCCCCce
Q psy7040         408 --GEPSDPTAPH  417 (716)
Q Consensus       408 --~~~s~~~~~~  417 (716)
                        |.+|+.+..+
T Consensus        87 ~~g~WSeWS~~~   98 (100)
T d2gysa4          87 YNGIWSEWSEAR   98 (100)
T ss_dssp             CCBCCCCCCCCE
T ss_pred             CCCCccCCCCCc
Confidence              6777776543

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1e-08  Score=80.82  Aligned_cols=87  Identities=18%  Similarity=0.181  Sum_probs=64.0

Q ss_pred             CCCCCCCCeEEeEEeCCeEEEEEECCC-CCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEE
Q psy7040         222 KPSPPGGPLKVSNVHAEGVTLDWKVPD-DDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA  300 (716)
Q Consensus       222 ~p~~p~~~~~~~~~~~~~~~l~W~~p~-~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a  300 (716)
                      +|..|.. +.+.....+++.|+|+++. ...+..+.+|.|+++......+.....    ...+.+.+|.+++.|.|+|+|
T Consensus        17 ~P~~pp~-~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~~----~~~~~~~~L~p~t~Y~~~V~A   91 (117)
T d1wj3a_          17 PPSQPPG-NVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNT----NKTSAELVLPIKEDYIIEVKA   91 (117)
T ss_dssp             CCCCCCC-SCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEEE----SSSEEEEECCCSSCEEEEEEE
T ss_pred             CcCCCCc-ceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeeec----eeeEEEeeccCCcEEEEEEEE
Confidence            4443333 3445677899999999743 223347899999998877666554432    456778899999999999999


Q ss_pred             EcCCCCCCCCccc
Q psy7040         301 VNKQGKSEPLTTT  313 (716)
Q Consensus       301 ~n~~g~~~~~~~~  313 (716)
                      .|..|.+..+...
T Consensus        92 ~n~~G~G~~S~~v  104 (117)
T d1wj3a_          92 TTDGGDGTSSEQI  104 (117)
T ss_dssp             EESSCCCCBCCCE
T ss_pred             EcCCccCCCCCCE
Confidence            9999998877653

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=7.1e-09  Score=79.14  Aligned_cols=85  Identities=16%  Similarity=0.173  Sum_probs=54.0

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcE--EEecccCCCeEEecCCCCCcEEEEEEEEEec
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVGKTREPEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~--~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      ++|| .|.+.. +.+++.|+|.+|...++..+..|+|+|+...+..+  ........+.+.|.+|.|++.|.|||+|.+.
T Consensus         6 ~~Pp-~l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa~~~   83 (100)
T d2gysa4           6 MAPP-SLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTS   83 (100)
T ss_dssp             CCCC-EEEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEEEEC
T ss_pred             CCCC-ccEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEEEEC
Confidence            4555 466654 45789999999986666667789999986654321  2222334589999999999999999999987


Q ss_pred             Cc--cCCCccc
Q psy7040         133 EG--ESEPLET  141 (716)
Q Consensus       133 ~g--~~~~s~~  141 (716)
                      .|  .+.+|+-
T Consensus        84 ~g~~~g~WSeW   94 (100)
T d2gysa4          84 RTGYNGIWSEW   94 (100)
T ss_dssp             CTTCCBCCCCC
T ss_pred             CCCCCCCccCC
Confidence            76  3444443

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.3e-08  Score=74.15  Aligned_cols=72  Identities=24%  Similarity=0.389  Sum_probs=62.6

Q ss_pred             ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCC--cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      .+.++.+..|+.+.|.|.+. .|.+.+.|++++..+..+.  .+.+..++..+.|.|.++.++|.|.|+|.|.|.
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   79 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG   79 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE
T ss_pred             CCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc
Confidence            35678999999999999995 6888999999999886554  477777788899999999999999999999774

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.1e-09  Score=79.48  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=60.2

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      +.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....             .+.++...|.|.|+|.|.|..|..+..+
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~   77 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTREV   77 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEcCCCEEEEEE
Confidence            467889999999999999999999999999987664322             2345678899999999999999888877


Q ss_pred             EEEEE
Q psy7040         513 KVTVL  517 (716)
Q Consensus       513 ~~~v~  517 (716)
                      .+.|.
T Consensus        78 ~l~V~   82 (84)
T d2oz4a3          78 TVNVL   82 (84)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77664

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.4e-08  Score=78.34  Aligned_cols=98  Identities=17%  Similarity=0.155  Sum_probs=70.8

Q ss_pred             CCCCCCCCcEEEeeeCCeEEEEecCCCCCC-----CccceEEEEEEeecCCCceEE-EeeecCCCCeEEecCCCCCCeEE
Q psy7040         323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNG-----GSPIVGYIIEKKEKYSPIWEK-CAQTEGDTPKGKVLDLIEGNQYE  396 (716)
Q Consensus       323 ~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~-----~~~i~~y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~Y~  396 (716)
                      ..|.+|.++.+. ...+.+.|+|.+|....     +..+..|.++++..+...+.. ..........+.+.+|.+++.|.
T Consensus         4 vkP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~   82 (114)
T d2gysa2           4 VQPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYV   82 (114)
T ss_dssp             BCCCCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEE
T ss_pred             ccCCcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEEE
Confidence            358899999986 67789999999975433     234567999998876443322 22334556678889999999999


Q ss_pred             EEEEEEeCCCC---CCCCCCCCceEeec
Q psy7040         397 FRVLAVNKGGP---GEPSDPTAPHIARA  421 (716)
Q Consensus       397 ~~v~a~n~~g~---~~~s~~~~~~~~~~  421 (716)
                      |+|+|.|..|.   |.+|+.+..+...+
T Consensus        83 ~rVRa~~~~g~~~~g~wS~WS~~v~~~t  110 (114)
T d2gysa2          83 ARVRTRLAPGSRLSGRPSKWSPEVCWDS  110 (114)
T ss_dssp             EEEEEEECTTSSCCBCCCCCCCCEEEEC
T ss_pred             EEEEEEeCCCCCCCCCccCCcCCEeeeC
Confidence            99999999886   45677766665544

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.77  E-value=1.8e-09  Score=79.94  Aligned_cols=74  Identities=20%  Similarity=0.356  Sum_probs=67.6

Q ss_pred             ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      .+.++.+.+|+.+.|.|.+ +.|.+.+.|++++..+..+.++.+...++.+.|.|.++.+.|.|.|+|.|.|..+
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~   80 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS   80 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE
Confidence            3567899999999999998 4788999999999999999999999999999999999999999999999987654

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=6.9e-09  Score=75.84  Aligned_cols=72  Identities=17%  Similarity=0.147  Sum_probs=61.3

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  515 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~  515 (716)
                      ..+.+|+.+.|.|.+.+.|.|.+.|++++.....          ....|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~----------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~   78 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV   78 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE----------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeeccccee----------eeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEE
Confidence            4588999999999999999999999998765422          133789999999999999999999999888887776


Q ss_pred             EE
Q psy7040         516 VL  517 (716)
Q Consensus       516 v~  517 (716)
                      |.
T Consensus        79 V~   80 (84)
T d2nxyb2          79 VL   80 (84)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.76  E-value=5.2e-09  Score=77.47  Aligned_cols=63  Identities=17%  Similarity=0.126  Sum_probs=52.9

Q ss_pred             eccCcee----eEEEEeCCeEeeecc--cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN--VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~--~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |.|.+.|    .+.|+++|.++..+.  .-....|.|.++...|+|.|+|.|.|..|....++.|.|+.
T Consensus        21 l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~A   89 (89)
T d1cs6a4          21 WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA   89 (89)
T ss_dssp             EECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEEC
Confidence            6666666    899999999887662  22236899999999999999999999999999999998863

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=6.7e-09  Score=79.37  Aligned_cols=66  Identities=18%  Similarity=0.261  Sum_probs=56.1

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                      +.|.+.|    ++.|+++|+.+..+.           ......|.|.++...|.|.|+|.|.|..|..+.+..|.|..+|
T Consensus        21 i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P  100 (103)
T d1wwbx_          21 IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCC
T ss_pred             EEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEEeCC
Confidence            6677777    999999999987541           1222579999999999999999999999999999999998887


Q ss_pred             C
Q psy7040         703 S  703 (716)
Q Consensus       703 ~  703 (716)
                      .
T Consensus       101 ~  101 (103)
T d1wwbx_         101 G  101 (103)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.74  E-value=7.8e-09  Score=78.42  Aligned_cols=63  Identities=19%  Similarity=0.251  Sum_probs=52.6

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |.|.+.|    .+.|++++.++..+.       .+....|.|.++...|.|.|+|.|.|..|....++.|.|..
T Consensus        24 l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          24 FRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEEE
Confidence            4555555    899999999987661       22346899999999999999999999999999999999875

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.74  E-value=8.6e-09  Score=78.87  Aligned_cols=63  Identities=24%  Similarity=0.260  Sum_probs=52.6

Q ss_pred             eccCcee----eEEEEeCCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |.|.+.|    .+.|+++|.++..+       .......|.|.++...|.|.|+|.|.|..|....++.|.|.+
T Consensus        28 l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          28 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET  101 (102)
T ss_dssp             EEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEEEE
Confidence            4555555    89999999998776       123347899999999999999999999999999999999875

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.5e-08  Score=78.78  Aligned_cols=86  Identities=19%  Similarity=0.250  Sum_probs=66.9

Q ss_pred             ccccEEEecCCeEEEEEEEeccC---CCeEEEEeCCeEec---cCCcEEEEe------CCCeEEEEECCCCCCCceeEEE
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEP---IPTKEWLCNDITII---SKDRFKIVN------DDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p---~~~~~W~~~~~~~~---~~~~~~~~~------~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      .+.++.+..|+.+.|.|.+.+.|   .|.+.|++++....   ...++....      ......|.|.++.+.|.|.|+|
T Consensus        10 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (110)
T d2avga1          10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRC   89 (110)
T ss_dssp             CCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEE
T ss_pred             CCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEE
Confidence            35678999999999999999999   57899999874332   112222211      1124579999999999999999


Q ss_pred             EEEcCCCceeeEEEEEEE
Q psy7040         500 AVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       500 ~a~n~~g~~~~s~~~~v~  517 (716)
                      .|.|..|..+.++.+.|.
T Consensus        90 ~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          90 EVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCeEEEEEEEEEE
Confidence            999999999999888875

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.5e-09  Score=81.30  Aligned_cols=81  Identities=15%  Similarity=0.175  Sum_probs=66.2

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCce-eEEEEEEcCCCceeeEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG-IYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~-~y~~~a~n~~g~~~~s~  512 (716)
                      .+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...  ...........|.|.++...|.| .|+|.|.|..|....++
T Consensus        10 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~   87 (92)
T d2ifga1          10 PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT--VMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV   87 (92)
T ss_dssp             CSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEE--ECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEE
T ss_pred             CCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeee--eeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEE
Confidence            4567889999999999999999999999998776432  22223445678999999999999 69999999999988877


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+.|
T Consensus        88 ~l~V   91 (92)
T d2ifga1          88 QVNV   91 (92)
T ss_dssp             CCCC
T ss_pred             EEEE
Confidence            6654

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=7e-09  Score=78.89  Aligned_cols=89  Identities=10%  Similarity=-0.003  Sum_probs=63.3

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCc-eEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI-WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  405 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~  405 (716)
                      +|.++++...+... .|+|++|..+++ .+..|.+......... +..+.........+.+.+|.++..|.|||+|.|..
T Consensus         3 ~P~nv~v~s~n~~~-~L~W~pP~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~n~~   80 (98)
T d1fyhb1           3 TPTNVTIESYNMNP-IVYWEYQIMPQV-PVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVGQ   80 (98)
T ss_dssp             CCEEEEEECBSSCC-EEEEECCCCSSC-CEEEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEEETT
T ss_pred             cCCceEEEEeCCcE-EEEECCCCCCCC-CceeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEEcCC
Confidence            68899998776554 699999877655 4444444433332222 33444455666778888999999999999999999


Q ss_pred             CCCCCCCCCCce
Q psy7040         406 GPGEPSDPTAPH  417 (716)
Q Consensus       406 g~~~~s~~~~~~  417 (716)
                      |.|.+++...++
T Consensus        81 g~S~ws~s~~f~   92 (98)
T d1fyhb1          81 KESAYAKSEEFA   92 (98)
T ss_dssp             EECCCEECCCBC
T ss_pred             cccCCccCCCcE
Confidence            999888765544

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=9.6e-09  Score=77.66  Aligned_cols=85  Identities=15%  Similarity=0.134  Sum_probs=64.2

Q ss_pred             CCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccC-----CCeEEecCCCCCcEEEEEEEE
Q psy7040          55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR-----EPEMDVTGLTPGHEYKFRVKA  129 (716)
Q Consensus        55 ~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~-----~~~~~i~~L~~~~~y~~~v~a  129 (716)
                      +++|.++++.... ....|+|++|..+++  ...|.|+++..+...|..+....     ...+.+.+|.++..|.|||+|
T Consensus         4 lP~P~nv~~~s~n-~~~~L~W~pp~~~g~--~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA   80 (99)
T d1y6kr1           4 LPSPPSVWFEAEF-FHHILHWTPIPQQSE--STCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRA   80 (99)
T ss_dssp             CCCCSCEEEEEET-TEEEEEECCCTTCCT--TCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEE
T ss_pred             CCCCCcceEEEEC-CEEEEEEcCCCCcCC--CCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEE
Confidence            4556677765444 467799998876544  46799999998888897754321     134567899999999999999


Q ss_pred             EecCccCCCcccc
Q psy7040         130 LNKEGESEPLETF  142 (716)
Q Consensus       130 ~~~~g~~~~s~~~  142 (716)
                      .|..|.|.++...
T Consensus        81 ~n~~g~S~Ws~t~   93 (99)
T d1y6kr1          81 VDGSRHSQWTVTN   93 (99)
T ss_dssp             EETTEECCCEECS
T ss_pred             EcCCCcCCCcccC
Confidence            9999999887654

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.72  E-value=7e-09  Score=78.42  Aligned_cols=61  Identities=18%  Similarity=0.195  Sum_probs=51.5

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|.++..+.       ......|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus        25 l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          25 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             EECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            6676666    899999999987651       123368999999999999999999999999998888887

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=5.6e-09  Score=79.44  Aligned_cols=88  Identities=14%  Similarity=0.096  Sum_probs=60.8

Q ss_pred             CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcE-EEecccCC--CeEEecCCCCCcEEEEEEEEEec
Q psy7040          56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-IPVGKTRE--PEMDVTGLTPGHEYKFRVKALNK  132 (716)
Q Consensus        56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~~--~~~~i~~L~~~~~y~~~v~a~~~  132 (716)
                      +||.+|.+.+.+.+. .|+|++|..+++ .+..|.+.........| ..+.....  +.+.+.+|.++..|.|||+|.|.
T Consensus         2 P~P~nv~v~s~n~~~-~L~W~pP~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~n~   79 (98)
T d1fyhb1           2 PTPTNVTIESYNMNP-IVYWEYQIMPQV-PVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVG   79 (98)
T ss_dssp             CCCEEEEEECBSSCC-EEEEECCCCSSC-CEEEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEEET
T ss_pred             ccCCceEEEEeCCcE-EEEECCCCCCCC-CceeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEEcC
Confidence            456667777665554 699999876554 35555555544444333 34443332  56778899999999999999999


Q ss_pred             CccCCCccccceE
Q psy7040         133 EGESEPLETFSSI  145 (716)
Q Consensus       133 ~g~~~~s~~~~~~  145 (716)
                      .|.|.++....++
T Consensus        80 ~g~S~ws~s~~f~   92 (98)
T d1fyhb1          80 QKESAYAKSEEFA   92 (98)
T ss_dssp             TEECCCEECCCBC
T ss_pred             CcccCCccCCCcE
Confidence            9999988765543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.8e-08  Score=76.08  Aligned_cols=90  Identities=17%  Similarity=0.266  Sum_probs=64.7

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEE---eCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEE
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL---CNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV  501 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~---~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a  501 (716)
                      +|.+.  .+.++.+..|+.+.|.|.+.+.|.|.+.|.   +++..........+........|.|.++.++|.|.|+|.|
T Consensus         2 ~P~f~--~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (96)
T d2c9aa1           2 TPHFL--RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI   79 (96)
T ss_dssp             SCEEC--CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCeec--ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEE
Confidence            45554  267899999999999999999998865543   2233222222233333444567999999999999999999


Q ss_pred             EcCCCceeeE-EEEEE
Q psy7040         502 KNSWGTDKGT-AKVTV  516 (716)
Q Consensus       502 ~n~~g~~~~s-~~~~v  516 (716)
                      .|..|..... +.+.|
T Consensus        80 ~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          80 RTEGGVGISNYAELVV   95 (96)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEE
Confidence            9999986443 56655

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.72  E-value=7.8e-09  Score=79.39  Aligned_cols=80  Identities=14%  Similarity=0.159  Sum_probs=63.0

Q ss_pred             cccEEEecCCeEEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         433 LSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      ...+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+......+.........|.|.++.+.|.|.|+|.|.|..|....+
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            456889999999999997 7899999999999876643333223333334579999999999999999999998876654


Q ss_pred             E
Q psy7040         512 A  512 (716)
Q Consensus       512 ~  512 (716)
                      .
T Consensus        91 v   91 (105)
T d1cs6a2          91 V   91 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.71  E-value=2.2e-08  Score=75.27  Aligned_cols=77  Identities=12%  Similarity=0.176  Sum_probs=62.8

Q ss_pred             ccccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~  509 (716)
                      .+.++.+.+|+.+.|.|.+.+.|.+ .+.|++++..+.......... .....|.|.++..+|.|.|+|.|.|..|...
T Consensus         8 ~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1           8 QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR-KDEGSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             CCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC-TTSCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeec-ccceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence            3567889999999999999999876 799999999886554433332 3345799999999999999999999999753

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=1.2e-07  Score=71.41  Aligned_cols=83  Identities=27%  Similarity=0.468  Sum_probs=64.1

Q ss_pred             ccEEEecCCeEEEEEEEeccCC-CeEEEEeC-CeEec-cCCcEEEE-eCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPI-PTKEWLCN-DITII-SKDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~-~~~~W~~~-~~~~~-~~~~~~~~-~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~  509 (716)
                      ....+..|+.+.|.|.+.+.|. +.+.|+++ +..+. ...++.+. .......|.|.++...|.|.|+|.|.|..|...
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   87 (97)
T d1epfa1           8 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS   87 (97)
T ss_dssp             SSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred             CCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEE
Confidence            3577899999999999999985 79999984 44443 34455443 345677899999999999999999999999653


Q ss_pred             -eEEEEEE
Q psy7040         510 -GTAKVTV  516 (716)
Q Consensus       510 -~s~~~~v  516 (716)
                       .++.+.+
T Consensus        88 ~~tv~l~V   95 (97)
T d1epfa1          88 EATVNVKI   95 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence             4555554

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.1e-08  Score=74.82  Aligned_cols=78  Identities=19%  Similarity=0.347  Sum_probs=64.2

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC-----CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040         440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-----DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  514 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~  514 (716)
                      .+....+.|.+.|.|.|.+.|++++..+..+....+...     .....|.|.++...|.|.|+|.|.|..|..+.++.+
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence            455667889999999999999999999987766654432     124579999999999999999999999999888776


Q ss_pred             EEE
Q psy7040         515 TVL  517 (716)
Q Consensus       515 ~v~  517 (716)
                      .+.
T Consensus        95 ~V~   97 (103)
T d1wwbx_          95 HFM   97 (103)
T ss_dssp             CCS
T ss_pred             EEE
Confidence            653

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.7e-08  Score=75.90  Aligned_cols=94  Identities=17%  Similarity=0.286  Sum_probs=71.6

Q ss_pred             CCCCCCCCcEEEee--eCCeEEEEecCCCC--CCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEE
Q psy7040         323 NQPGKPGTPEIKDF--DTDFVELAWTPPEQ--NGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR  398 (716)
Q Consensus       323 ~~p~~p~~~~~~~~--~~~~i~l~W~~p~~--~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~  398 (716)
                      ..|.+|.++.+..+  +.+++.|+|.+|..  ........|.++++..+...|....  ......+.|.+|.+++.|.|+
T Consensus         6 VkP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~~~t~Y~~r   83 (109)
T d1uc6a_           6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVE--LSNGTAHTITDAYAGKEYIIQ   83 (109)
T ss_dssp             CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEE--ESSCSEEEETTCCSSSCEEEE
T ss_pred             EECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEec--cCCceeEEeCCCCCCCEEEEE
Confidence            35888999988755  56789999998753  2334567899999888777776544  346778999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceEe
Q psy7040         399 VLAVNKGGPGEPSDPTAPHIA  419 (716)
Q Consensus       399 v~a~n~~g~~~~s~~~~~~~~  419 (716)
                      |+|.|. +.+.+|+.+..+..
T Consensus        84 VrA~~~-~~g~wS~WS~~~~~  103 (109)
T d1uc6a_          84 VAAKDN-EIGTWSDWSVAAHA  103 (109)
T ss_dssp             EECCBS-SSCCCCCCCEEEEE
T ss_pred             EEEEEC-CCCCcCCCCCCEEe
Confidence            999875 56777776655443

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.1e-08  Score=77.13  Aligned_cols=82  Identities=17%  Similarity=0.336  Sum_probs=63.5

Q ss_pred             EEEecCCeEE---EEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCC-------CeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         436 IKVRAGSNFE---FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD-------KSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       436 ~~~~~g~~~~---~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      +.+..|....   +.|.+.|.|.|.+.|++++..+............       ....|.|.++...|.|.|+|.|.|..
T Consensus         7 ~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~   86 (107)
T d1he7a_           7 VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF   86 (107)
T ss_dssp             CCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETT
T ss_pred             eEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCC
Confidence            3444444444   4558999999999999999998876665544322       23569999999999999999999999


Q ss_pred             CceeeEEEEEEE
Q psy7040         506 GTDKGTAKVTVL  517 (716)
Q Consensus       506 g~~~~s~~~~v~  517 (716)
                      |....++.+.+.
T Consensus        87 G~~~~~i~v~v~   98 (107)
T d1he7a_          87 GQASASIMAAFM   98 (107)
T ss_dssp             EEEEEEEEECCC
T ss_pred             CEEEEEEEEEEE
Confidence            998888776654

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.69  E-value=8.5e-09  Score=76.82  Aligned_cols=62  Identities=15%  Similarity=0.087  Sum_probs=51.2

Q ss_pred             eccCcee----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|++++.............|.|.++...|+|.|+|.|.|..|....+..|.|.
T Consensus        25 l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          25 LECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEccCCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            6677776    8999997665544434445789999999999999999999999999989989886

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.68  E-value=1.3e-08  Score=75.34  Aligned_cols=61  Identities=18%  Similarity=0.144  Sum_probs=50.2

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|.++..+. .-....|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus        23 l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          23 IPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEeCCCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            6666666    899999999986651 112256999999999999999999999999888888876

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=5.4e-08  Score=73.29  Aligned_cols=80  Identities=16%  Similarity=0.297  Sum_probs=65.7

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee-eEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTA  512 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~-~s~  512 (716)
                      .+..+.+|+.+.|.|.+.+ +.+.+.|++++..+....++.+...  ...|.|.++..+|.|.|+|.|.|..|... ..+
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~--~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~   87 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQN--NSILRIDPIKREDAGEYQCEISNPVSVRRSNSI   87 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETT--TTEEEECSCCGGGCEEEEEEEESSSCCEECCCC
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCC--ceEEEEeccchhhceEEEEEEEeCCCCeEEEeE
Confidence            4567899999999999876 5679999999999988888876554  44799999999999999999999988663 344


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+.|
T Consensus        88 ~L~V   91 (96)
T d1l6za2          88 KLDI   91 (96)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.6e-08  Score=77.87  Aligned_cols=85  Identities=16%  Similarity=0.236  Sum_probs=65.2

Q ss_pred             cccEEEecCCeEEEEEEEeccC---CCeEEEEeCCeEec---cCCcEEEEe--C----CCeEEEEECCCCCCCceeEEEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEP---IPTKEWLCNDITII---SKDRFKIVN--D----DKSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p---~~~~~W~~~~~~~~---~~~~~~~~~--~----~~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      +.++.+..|+.+.|.|.+.+.|   .|.+.|++++....   ....+.+..  .    .....|.|.++.+.|.|.|+|.
T Consensus         7 P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (113)
T d2dava1           7 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCE   86 (113)
T ss_dssp             CCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEE
T ss_pred             CceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEE
Confidence            4578899999999999999998   57899999864321   222232211  1    1235799999999999999999


Q ss_pred             EEcCCCceeeEEEEEEE
Q psy7040         501 VKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       501 a~n~~g~~~~s~~~~v~  517 (716)
                      |.|..|..+.++.+.|.
T Consensus        87 a~N~~G~~~~~~~L~V~  103 (113)
T d2dava1          87 VTYKDKFDSCSFDLEVH  103 (113)
T ss_dssp             EECSSCEEEECCEEEEE
T ss_pred             EEeCCCEEEEEEEEEEE
Confidence            99999998877776665

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.7e-08  Score=71.74  Aligned_cols=75  Identities=20%  Similarity=0.275  Sum_probs=57.4

Q ss_pred             cccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce-ee
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KG  510 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-~~  510 (716)
                      +.+..+..|..+.|.|.+.|.|.| .+.|++++..+.....         ..+.|.....+|.|.|+|.|.|..|.. +.
T Consensus         8 P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~---------~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~   78 (85)
T d1rhfa2           8 PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------SPSVLNVTGVTQSTMFSCEAHNLKGLASSR   78 (85)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------SSEEEEECCCSSCEEEEEEEEETTEEEECC
T ss_pred             CCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC---------cceEEecCCccccEEEEEEEEcCCCcEEEE
Confidence            456789999999999999999987 8999999988754321         123444455679999999999999964 34


Q ss_pred             EEEEEE
Q psy7040         511 TAKVTV  516 (716)
Q Consensus       511 s~~~~v  516 (716)
                      .+.+.+
T Consensus        79 ~~~v~V   84 (85)
T d1rhfa2          79 TATVHL   84 (85)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            555554

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=1.5e-08  Score=78.35  Aligned_cols=81  Identities=12%  Similarity=0.176  Sum_probs=54.1

Q ss_pred             CCCCce-EEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC------cEEEeccc---CCCeEEecCCCCCcEEEEE
Q psy7040          57 PEGPLE-VSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG------VWIPVGKT---REPEMDVTGLTPGHEYKFR  126 (716)
Q Consensus        57 p~~~l~-~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~------~~~~~~~~---~~~~~~i~~L~~~~~y~~~  126 (716)
                      ||.++. +...+.+++.++|+++. +++.+ ..|.+.|......      .+..+...   ..+++.+.+|.+++.|.||
T Consensus         7 ~P~~v~~i~~~~~~sv~~sW~p~~-d~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~Y~fr   84 (107)
T d1cd9b1           7 SPSNLSCLMHLTTNSLVCQWEPGP-ETHLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYMAIW   84 (107)
T ss_dssp             CCEEEEEEEETTTTEEEEEEECCS-CCSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCEEEE
T ss_pred             CCcCCEEEEecCCCEEEEEEcCCC-CCCCC-cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCceEEEE
Confidence            333344 34556789999999876 45555 4566666543321      12222211   2367899999999999999


Q ss_pred             EEEEecCccCCCc
Q psy7040         127 VKALNKEGESEPL  139 (716)
Q Consensus       127 v~a~~~~g~~~~s  139 (716)
                      |+|.|..|.+.++
T Consensus        85 V~A~N~~G~s~S~   97 (107)
T d1cd9b1          85 VQAENMLGSSESP   97 (107)
T ss_dssp             EEEEETTEEEECC
T ss_pred             EEEEeCCccccCC
Confidence            9999999987533

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.6e-08  Score=75.06  Aligned_cols=83  Identities=20%  Similarity=0.175  Sum_probs=64.8

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEE----eC-C-------CeEEEEECCCCCCCce-eEEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV----ND-D-------KSTKLKVFDSKRGDSG-IYTL  499 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~----~~-~-------~~~~l~i~~l~~~~~~-~y~~  499 (716)
                      ...+.+..|+.+.|.|.+.+.|.+.+.|++++..+.........    .. .       ....|.|.++.+.|.| .|+|
T Consensus         9 ~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C   88 (107)
T d1iray3           9 NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC   88 (107)
T ss_dssp             SEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEE
T ss_pred             CCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEE
Confidence            34567888999999999999999999999999887644322111    11 0       1357999999999999 5999


Q ss_pred             EEEcCCCceeeEEEEE
Q psy7040         500 AVKNSWGTDKGTAKVT  515 (716)
Q Consensus       500 ~a~n~~g~~~~s~~~~  515 (716)
                      .|.|..|.....+.|.
T Consensus        89 ~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          89 FAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EEECSSCEEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEEE
Confidence            9999999987776654

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=1.7e-08  Score=76.89  Aligned_cols=63  Identities=19%  Similarity=0.268  Sum_probs=52.4

Q ss_pred             eccCcee----eEEEEeCCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |.|.+.|    .+.|+++|..+...        .......|.|.++...|.|.|+|.|.|..|....++.|.|..
T Consensus        25 l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          25 LVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            5566666    89999999988654        122336899999999999999999999999999999999875

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.64  E-value=2.3e-08  Score=75.61  Aligned_cols=81  Identities=16%  Similarity=0.150  Sum_probs=62.5

Q ss_pred             cccEEEecC---CeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce-
Q psy7040         433 LSDIKVRAG---SNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-  508 (716)
Q Consensus       433 ~~~~~~~~g---~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-  508 (716)
                      +.+..+..|   +.+.|.|.+.|.|.+.+.|++++..+.......+.... ...+.+..+...|.|.|+|.|.|..|.. 
T Consensus        11 P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~   89 (97)
T d1cs6a1          11 PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-GDLVISNPVKAKDAGSYQCVATNARGTVV   89 (97)
T ss_dssp             CCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEET-TEEEEESCCHHHHCEEEEEEEEETTEEEE
T ss_pred             CCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeee-eeEEEEecccccCCEEEEEEEEECCCEEE
Confidence            344556554   68999999999999999999999998755444333333 3578889999999999999999999975 


Q ss_pred             eeEEEE
Q psy7040         509 KGTAKV  514 (716)
Q Consensus       509 ~~s~~~  514 (716)
                      +..+.|
T Consensus        90 S~~a~L   95 (97)
T d1cs6a1          90 SREASL   95 (97)
T ss_dssp             CCCEEE
T ss_pred             EEEEEE
Confidence            334444

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.9e-08  Score=76.30  Aligned_cols=61  Identities=10%  Similarity=0.089  Sum_probs=48.2

Q ss_pred             eEEEEeCCeEeeec---------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCC
Q psy7040         645 ESQYLMNDKRVTID---------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP  705 (716)
Q Consensus       645 ~~~W~~~~~~~~~~---------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p  705 (716)
                      .+.|++++......               .......|.|.++.+.|+|.|+|.|.|..|..++++.|.|.+++..+
T Consensus        34 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~~  109 (113)
T d2dava1          34 TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT  109 (113)
T ss_dssp             EEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCCSC
T ss_pred             EEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEEcCCCcC
Confidence            68999976432111               22233679999999999999999999999999999999998776654

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.62  E-value=9.3e-09  Score=76.65  Aligned_cols=62  Identities=19%  Similarity=0.307  Sum_probs=51.9

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|+++|..+..+      .......|.|.++...|+|.|+|.|.|..|....++.|.|+
T Consensus        19 l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          19 FSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             EEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEECC
T ss_pred             EEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEEE
Confidence            5566665    89999999887665      23344789999999999999999999999999999988875

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.5e-07  Score=72.09  Aligned_cols=86  Identities=16%  Similarity=0.119  Sum_probs=64.0

Q ss_pred             ccccEEEecCCeEEEEEEEeccC-CCeEEEEeCCeEec---cCCcEEEEeCC--CeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         432 QLSDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITII---SKDRFKIVNDD--KSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       432 ~~~~~~~~~g~~~~~~~~v~~~p-~~~~~W~~~~~~~~---~~~~~~~~~~~--~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      .+....+..|+.+.|.|.+.+.| .|.+.|++++..+.   ...........  ....|.|.++.++|.|.|+|.|.|..
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   88 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQS   88 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCC
Confidence            34567899999999999999998 58999999876543   12222222222  23469999999999999999999999


Q ss_pred             Ccee-eEEEEEEE
Q psy7040         506 GTDK-GTAKVTVL  517 (716)
Q Consensus       506 g~~~-~s~~~~v~  517 (716)
                      |... .+..+.|.
T Consensus        89 G~~~s~~~~l~V~  101 (104)
T d2aw2a1          89 NLIESHSTTLYVT  101 (104)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             CeEEEEEEEEEEE
Confidence            9753 45666553

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.6e-08  Score=75.08  Aligned_cols=98  Identities=18%  Similarity=0.191  Sum_probs=66.3

Q ss_pred             cCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCC-----ccceEEEEEEeCCCCCeEE-ccccCcccceEEEcCCCCCCeE
Q psy7040         221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQ-----PIEKYVVDKMDEATGRWTP-AGETEGPVTGLEVEGLIPNHKY  294 (716)
Q Consensus       221 ~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~-----~~~~y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~~~y  294 (716)
                      .+|.+|.+ |.+. ...+++.|+|.+|...++.     .+..|.++++..+...|.. ..........+.+.+|.|++.|
T Consensus         4 vkP~pP~n-l~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y   81 (114)
T d2gysa2           4 VQPPEPRD-LQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTY   81 (114)
T ss_dssp             BCCCCCEE-EEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEE
T ss_pred             ccCCcCCC-eEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEE
Confidence            36889988 8875 5678999999988654322     2456889888766543221 1122244678899999999999


Q ss_pred             EEEEEEEcCCCCC---CCCcccceEEecC
Q psy7040         295 KFRVRAVNKQGKS---EPLTTTASIEAKN  320 (716)
Q Consensus       295 ~~~v~a~n~~g~~---~~~~~~~~~~~~~  320 (716)
                      .|+|+|.+..|.+   .+|..+..+...+
T Consensus        82 ~~rVRa~~~~g~~~~g~wS~WS~~v~~~t  110 (114)
T d2gysa2          82 VARVRTRLAPGSRLSGRPSKWSPEVCWDS  110 (114)
T ss_dssp             EEEEEEEECTTSSCCBCCCCCCCCEEEEC
T ss_pred             EEEEEEEeCCCCCCCCCccCCcCCEeeeC
Confidence            9999999988763   4555555555543

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.61  E-value=1.1e-08  Score=76.61  Aligned_cols=62  Identities=19%  Similarity=0.317  Sum_probs=51.5

Q ss_pred             eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|++++..+..+      .......|.|.++...|+|.|+|.|.|..|..+.++.|.|+
T Consensus        22 l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          22 LEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEEEEEC
Confidence            5566665    89999999887765      22334689999999999999999999999999999988874

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=9.8e-08  Score=73.18  Aligned_cols=76  Identities=25%  Similarity=0.325  Sum_probs=61.5

Q ss_pred             CeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEe--CC--CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         442 SNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN--DD--KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       442 ~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~--~~--~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      ....+.|.+.|.|.|.+.|++++..+.......+..  ..  ....|.|.++...|.|.|+|.|.|..|..+.++.+.+.
T Consensus        18 ~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~   97 (105)
T d1wwca_          18 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL   97 (105)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEE
Confidence            345577899999999999999999988776655432  22  24569999999999999999999999998887766654

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.5e-08  Score=76.70  Aligned_cols=66  Identities=15%  Similarity=0.202  Sum_probs=54.8

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-------------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-------------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-------------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      +.|.+.|    .+.|+++|+++..+.             ......|.|.++...|.|.|+|.|.|..|...++..|.|..
T Consensus        20 i~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~   99 (107)
T d1he7a_          20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD   99 (107)
T ss_dssp             EEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCS
T ss_pred             EEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEc
Confidence            4556666    899999999886541             11225699999999999999999999999999999999999


Q ss_pred             CCC
Q psy7040         701 KPS  703 (716)
Q Consensus       701 ~p~  703 (716)
                      +|.
T Consensus       100 ~P~  102 (107)
T d1he7a_         100 NPF  102 (107)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            884

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=4.2e-08  Score=76.29  Aligned_cols=77  Identities=25%  Similarity=0.314  Sum_probs=59.2

Q ss_pred             EEEecCCeEEEEEEE-eccCCCeEEEEeCCeEeccCCcEE--------EEeCCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         436 IKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFK--------IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~--------~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      ..+..|+.+.|.|.+ .+.|.+.+.|++++..+.......        .........|.|.++...|.|.|+|.|.|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            357899999999998 489999999999998775443322        22233455789999999999999999999999


Q ss_pred             ceeeEE
Q psy7040         507 TDKGTA  512 (716)
Q Consensus       507 ~~~~s~  512 (716)
                      ....+.
T Consensus        92 ~~~~s~   97 (110)
T d1f97a2          92 TAMRSE   97 (110)
T ss_dssp             CCEECC
T ss_pred             cEEEEE
Confidence            775543

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=2.9e-08  Score=74.84  Aligned_cols=66  Identities=18%  Similarity=0.279  Sum_probs=54.1

Q ss_pred             eccCcee---eEEEEeCCeEeeecc----cceeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEEEecCCC
Q psy7040         638 SLMPISL---ESQYLMNDKRVTIDN----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPS  703 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~~----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~v~~~p~  703 (716)
                      |.|.+.+   .+.|+++|+.+....    ......|.|.++..+|.|.|+|.|.|..|... ..+.|.|..+|+
T Consensus        23 l~C~~~~~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~Ps   96 (96)
T d1l6za2          23 LTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPS   96 (96)
T ss_dssp             EEECCCCSSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSCC
T ss_pred             EEEccCCCCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCCC
Confidence            6677666   899999999887651    22336899999999999999999999999874 568899988774

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=9.4e-09  Score=80.82  Aligned_cols=88  Identities=22%  Similarity=0.292  Sum_probs=59.8

Q ss_pred             CCCCCCCCeEEeE-EeCCeEEEEEECCCCC-----CCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEE
Q psy7040         222 KPSPPGGPLKVSN-VHAEGVTLDWKVPDDD-----GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYK  295 (716)
Q Consensus       222 ~p~~p~~~~~~~~-~~~~~~~l~W~~p~~~-----~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~  295 (716)
                      +|.+|.+ +.+.. ....++.|+|++|..+     .+..+.+|.+..   ....+........+...+.|.+|.+++.|.
T Consensus        10 pp~pP~~-v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~---~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~   85 (117)
T d2cspa1          10 PPAPPQD-VTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA---KGQRVAEVIFPTADSTAVELVRLRSLEAKG   85 (117)
T ss_dssp             CCCCCEE-EEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEES---SSSEEEEECCTTCSEEEEESHHHHHHTCSC
T ss_pred             CCCCCCc-cEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEe---ecccceeeeeeccceeeeeccCCCCCcEEE
Confidence            4556655 55543 4567899999987542     223455565543   222333333344556788999999999999


Q ss_pred             EEEEEEcCCCCCCCCccc
Q psy7040         296 FRVRAVNKQGKSEPLTTT  313 (716)
Q Consensus       296 ~~v~a~n~~g~~~~~~~~  313 (716)
                      |+|+|.|..|.|..|...
T Consensus        86 v~V~A~n~~G~s~~S~~v  103 (117)
T d2cspa1          86 VTVRTLSAQGESVDSAVA  103 (117)
T ss_dssp             BEEEEEESSCCCCCCSCB
T ss_pred             EEEEEEcCCCcCCCCCCE
Confidence            999999999998777664

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.6e-08  Score=73.32  Aligned_cols=57  Identities=16%  Similarity=0.016  Sum_probs=49.3

Q ss_pred             eccCcee----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      |.|.+.|    .+.|+++|..+...       +.+..+...|+|.|+|.|.|..|+.+..+.|.|..|
T Consensus        24 l~C~a~G~P~P~v~W~k~g~~~~~~-------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~P   84 (84)
T d2oz4a3          24 PMCQAWGNPLPELKCLKDGTFPLPI-------GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP   84 (84)
T ss_dssp             CCCCCEEESCCEEEEEETTTEECCT-------TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEeEcCccEEEEEEeeccceee-------eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEECC
Confidence            8899998    99999999877654       235578899999999999999999999999998764

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=7.3e-08  Score=71.39  Aligned_cols=79  Identities=14%  Similarity=0.244  Sum_probs=61.7

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCc-EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      ....+.+|+.+.|.|.+.+ +.+.+.|++++..+..... +.+..   ...|.|.++.+.|.|.|+|.|.|..|....+.
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~---~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMG---RKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTT---TTCEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecce---eeEEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            3567899999999999998 6789999999988764433 33222   23699999999999999999999998766555


Q ss_pred             EEEE
Q psy7040         513 KVTV  516 (716)
Q Consensus       513 ~~~v  516 (716)
                      .+..
T Consensus        81 ~l~~   84 (92)
T d1olza1          81 VVAK   84 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.2e-07  Score=70.72  Aligned_cols=85  Identities=13%  Similarity=0.033  Sum_probs=56.4

Q ss_pred             CCCCCCceEEEE-eCCeEEEEecCCCCCCC---CccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEE
Q psy7040          55 LDPEGPLEVSNI-HKDGCTLKWNKPKDDGG---EPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKAL  130 (716)
Q Consensus        55 ~~p~~~l~~~~~-~~~s~~l~W~~p~~~~~---~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  130 (716)
                      ++||.+|.+... ..+.+.|+|++|.....   .-...|+|+|+..+...|........+.   .+|.+++.|.|+|+|.
T Consensus         2 PdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~~~t~---~~L~p~~~Y~v~VRa~   78 (94)
T d3d85d3           2 PDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTS---ATVICRKNASISVRAQ   78 (94)
T ss_dssp             CCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEESSSE---EEECCCSSCEEEEEEE
T ss_pred             CCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEeccccceE---EEecCCCCEEEEEEEe
Confidence            567777887754 34679999999864322   2267899999988877776655544343   4578999999999999


Q ss_pred             ecCccCCCcccc
Q psy7040         131 NKEGESEPLETF  142 (716)
Q Consensus       131 ~~~g~~~~s~~~  142 (716)
                      +..+.|.+|+-+
T Consensus        79 ~~~~~g~WSeWS   90 (94)
T d3d85d3          79 DRYYSSSWSEWA   90 (94)
T ss_dssp             ESSSCCCCCCCE
T ss_pred             cCCCCCCCccCc
Confidence            988877777644

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=3.3e-08  Score=73.35  Aligned_cols=62  Identities=21%  Similarity=0.168  Sum_probs=50.0

Q ss_pred             eccCcee-----eEEEEeCCeEeeec-ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTID-NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~-~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.+     .+.|++++..+... .......|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus        22 l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          22 FICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             EEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEccCCCCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            5555543     89999988776554 22234689999999999999999999999999988888874

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=4.5e-08  Score=75.63  Aligned_cols=85  Identities=18%  Similarity=0.202  Sum_probs=59.7

Q ss_pred             CCCCCCCCcEE-EeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC----ceEE--E-eeecCCCCeEEecCCCCCCe
Q psy7040         323 NQPGKPGTPEI-KDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP----IWEK--C-AQTEGDTPKGKVLDLIEGNQ  394 (716)
Q Consensus       323 ~~p~~p~~~~~-~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~----~~~~--~-~~~~~~~~~~~i~~l~~~~~  394 (716)
                      .+|.+|.++.+ .....++++|+|.++. +++.+ ..|.+.+......    .+..  . .........+.+.+|.+++.
T Consensus         3 ~PP~~P~~v~~i~~~~~~sv~~sW~p~~-d~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~   80 (107)
T d1cd9b1           3 YPPASPSNLSCLMHLTTNSLVCQWEPGP-ETHLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQY   80 (107)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCS-CCSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSC
T ss_pred             CccCCCcCCEEEEecCCCEEEEEEcCCC-CCCCC-cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCce
Confidence            46889999985 4567889999999764 45545 4566666543311    1111  1 11234557788999999999


Q ss_pred             EEEEEEEEeCCCCCC
Q psy7040         395 YEFRVLAVNKGGPGE  409 (716)
Q Consensus       395 Y~~~v~a~n~~g~~~  409 (716)
                      |.|+|.|.|..|.+.
T Consensus        81 Y~frV~A~N~~G~s~   95 (107)
T d1cd9b1          81 MAIWVQAENMLGSSE   95 (107)
T ss_dssp             EEEEEEEEETTEEEE
T ss_pred             EEEEEEEEeCCcccc
Confidence            999999999999875

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1e-07  Score=70.99  Aligned_cols=62  Identities=11%  Similarity=0.179  Sum_probs=49.2

Q ss_pred             eccCcee----eEEEEeCCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|++++..+...        .......|.|.++.+.|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        16 l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          16 LNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             EEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            5566665    89999999987654        22233679999999999999999999999985 557778775

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4e-08  Score=71.65  Aligned_cols=61  Identities=16%  Similarity=0.126  Sum_probs=52.1

Q ss_pred             eccCcee----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP  702 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p  702 (716)
                      |.|.+.|    .+.|++++..+...    ...|.|.++..+|+|.|+|.|.|..|.......|.|...|
T Consensus        19 L~C~~~g~p~P~i~W~~~~~~~~~~----~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~~   83 (84)
T d2nxyb2          19 LTLESPPGSSPSVQCRSPRGKNIQG----GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ   83 (84)
T ss_dssp             EEEECCTTCCCEEEEECTTCCEEEE----SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECCC
T ss_pred             EEEEeEcCCchheEEEeecccceee----eeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEecC
Confidence            6677777    99999987655433    3679999999999999999999999999999999998765

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.6e-08  Score=77.93  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=62.4

Q ss_pred             cEEEecCCeEEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEEe-------CCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         435 DIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      ...+..|+.+.|.|.+ .+.|.+.+.|++++..+.....+....       ......|.|.++...|.|.|+|.|.|..|
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence            3567899999999998 589999999999998876543332221       22345789999999999999999999999


Q ss_pred             ceeeEEEE
Q psy7040         507 TDKGTAKV  514 (716)
Q Consensus       507 ~~~~s~~~  514 (716)
                      ....+..+
T Consensus        91 ~~~~s~~v   98 (104)
T d1nbqa2          91 TPMTSNAV   98 (104)
T ss_dssp             CCEECCCB
T ss_pred             ceEEEEEE
Confidence            87665433

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.6e-07  Score=69.88  Aligned_cols=86  Identities=16%  Similarity=0.179  Sum_probs=58.8

Q ss_pred             CCCCCCcEEEeee-CCeEEEEecCCCCCC---CccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEE
Q psy7040         325 PGKPGTPEIKDFD-TDFVELAWTPPEQNG---GSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL  400 (716)
Q Consensus       325 p~~p~~~~~~~~~-~~~i~l~W~~p~~~~---~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~  400 (716)
                      |.+|.++.+.... .+.+.|+|.+|....   +.....|.|.|+..++..|......  ..+.   ..|.+++.|.|+|+
T Consensus         2 PdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~--~~t~---~~L~p~~~Y~v~VR   76 (94)
T d3d85d3           2 PDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFT--DKTS---ATVICRKNASISVR   76 (94)
T ss_dssp             CCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEE--SSSE---EEECCCSSCEEEEE
T ss_pred             CCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEeccc--cceE---EEecCCCCEEEEEE
Confidence            7889999998654 467999999986432   2236789999998776666654432  2222   35789999999999


Q ss_pred             EEeCCCCCCCCCCCC
Q psy7040         401 AVNKGGPGEPSDPTA  415 (716)
Q Consensus       401 a~n~~g~~~~s~~~~  415 (716)
                      |.+..|.|.+|+.+.
T Consensus        77 a~~~~~~g~WSeWS~   91 (94)
T d3d85d3          77 AQDRYYSSSWSEWAS   91 (94)
T ss_dssp             EEESSSCCCCCCCEE
T ss_pred             EecCCCCCCCccCcC
Confidence            999999898888753

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=5.8e-08  Score=71.99  Aligned_cols=62  Identities=16%  Similarity=0.049  Sum_probs=50.9

Q ss_pred             eccCcee----eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|++++..+...   .......|.|.++...|+|.|+|.|.|..|..+.+..|.|.
T Consensus        21 l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          21 LTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            6677766    99999977655443   22334789999999999999999999999999999999885

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.48  E-value=8.3e-08  Score=72.30  Aligned_cols=61  Identities=21%  Similarity=0.219  Sum_probs=48.1

Q ss_pred             eccCcee----eEEEEeCCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~v  698 (716)
                      |.|.+.|    .+.|+++|.++...        .......|.|.++..+|+|.|+|.|.|..|... .+..|+|
T Consensus        23 l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~V   96 (97)
T d1biha3          23 IYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV   96 (97)
T ss_dssp             EEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEE
T ss_pred             EEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEE
Confidence            5565555    89999999988654        112226899999999999999999999999874 4677776

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.1e-07  Score=72.09  Aligned_cols=57  Identities=12%  Similarity=0.099  Sum_probs=45.5

Q ss_pred             eEEEEeCCeEeeec---------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         645 ESQYLMNDKRVTID---------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       645 ~~~W~~~~~~~~~~---------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      .+.|++++......               .......|.|.++...|+|.|+|.|.|..|..++++.|.|.++
T Consensus        38 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          38 VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             EEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEEec
Confidence            58999977432111               1223367999999999999999999999999999999999863

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.9e-07  Score=70.34  Aligned_cols=85  Identities=21%  Similarity=0.198  Sum_probs=63.9

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeee---cCCCCeEEecCCCCCCeEEEEEEEEe
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT---EGDTPKGKVLDLIEGNQYEFRVLAVN  403 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~Y~~~v~a~n  403 (716)
                      +|.++++.. .+....|+|++|..+++  ...|.|+++..+...|.....-   ......+.+.+|.++..|.|||+|.|
T Consensus         6 ~P~nv~~~s-~n~~~~L~W~pp~~~g~--~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA~n   82 (99)
T d1y6kr1           6 SPPSVWFEA-EFFHHILHWTPIPQQSE--STCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAVD   82 (99)
T ss_dssp             CCSCEEEEE-ETTEEEEEECCCTTCCT--TCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEEEE
T ss_pred             CCCcceEEE-ECCEEEEEEcCCCCcCC--CCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEEEc
Confidence            367898764 45578899998766544  4679999998887888876432   22234456788999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy7040         404 KGGPGEPSDPT  414 (716)
Q Consensus       404 ~~g~~~~s~~~  414 (716)
                      ..|.|.++...
T Consensus        83 ~~g~S~Ws~t~   93 (99)
T d1y6kr1          83 GSRHSQWTVTN   93 (99)
T ss_dssp             TTEECCCEECS
T ss_pred             CCCcCCCcccC
Confidence            99998886543

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2e-07  Score=68.96  Aligned_cols=79  Identities=13%  Similarity=0.034  Sum_probs=60.7

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEeccCC-CeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPI-PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +|.+.. ....+.+..|+.+.|.|.+.+.|. +.+.|++++..+....+.....   +..|.|.++...|.|.|+|.|.|
T Consensus         6 ~P~~~~-~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T d1n26a1           6 CPAQEV-ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM---GRRLLLRSVQLHDSGNYSCYRAG   81 (93)
T ss_dssp             CCCCCC-CTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEE---SSEEEECSCCGGGCEEEEEESSS
T ss_pred             CCcEEe-CCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecC---CCEEEECCCChhcCEEEEEEECC
Confidence            444442 344678889999999999988765 5899999998887655544332   33799999999999999999987


Q ss_pred             CCCc
Q psy7040         504 SWGT  507 (716)
Q Consensus       504 ~~g~  507 (716)
                      ..+.
T Consensus        82 ~~~~   85 (93)
T d1n26a1          82 RPAG   85 (93)
T ss_dssp             SCSC
T ss_pred             cccc
Confidence            6543

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.43  E-value=4.3e-07  Score=66.50  Aligned_cols=73  Identities=11%  Similarity=0.179  Sum_probs=56.7

Q ss_pred             EEEecCCeEEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce-eeEEE
Q psy7040         436 IKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAK  513 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-~~s~~  513 (716)
                      ..+.+|+.+.|.|.+.+ .|.+.+.|++++..+..        ......|.|.++..+|.|.|+|.|.|..|.. +..+.
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~--------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~   81 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF--------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVT   81 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE--------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccc--------cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEE
Confidence            45889999999999964 46678999999877532        2234579999999999999999999998864 33444


Q ss_pred             EEE
Q psy7040         514 VTV  516 (716)
Q Consensus       514 ~~v  516 (716)
                      +.|
T Consensus        82 l~V   84 (88)
T d2fcba2          82 ITV   84 (88)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.5e-07  Score=67.85  Aligned_cols=74  Identities=11%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             cEEEecCCeEEEEE------EEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         435 DIKVRAGSNFEFDI------NVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       435 ~~~~~~g~~~~~~~------~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      ...+..|....+.|      ...+.|.|.+.|++++..+...........   ..|.|.++...|.|.|+|.|.|..|..
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK---DRLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEET---TEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecC---CEEEEcccccccCcEEEEEEEECcCCE
Confidence            35688899999999      567999999999999999876554433333   269999999999999999999988755


Q ss_pred             eeE
Q psy7040         509 KGT  511 (716)
Q Consensus       509 ~~s  511 (716)
                      ...
T Consensus        85 ~~~   87 (103)
T d1iray2          85 QYP   87 (103)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.40  E-value=1.6e-07  Score=68.92  Aligned_cols=55  Identities=13%  Similarity=0.138  Sum_probs=45.5

Q ss_pred             eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEEecC
Q psy7040         645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDK  701 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v~~~  701 (716)
                      .+.|+|+|+.+...  .....|.|.++..+|+|.|+|.|.|..|.. +....|.|+.|
T Consensus        32 ~~~W~k~g~~~~~~--~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          32 KVTFFQNGKSKKFS--RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             EEEEEETTEEEEEE--SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             EEEEEeeccccccc--ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            89999999988654  233679999999999999999999998875 45677888764

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.4e-07  Score=68.59  Aligned_cols=59  Identities=7%  Similarity=-0.029  Sum_probs=43.6

Q ss_pred             eccCcee-----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEEe
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v~  699 (716)
                      |.|.+.|     ++.|+++|..+...   ....+.|.....+|+|.|+|.|.|.+|.. +..+.|.|+
T Consensus        21 l~C~~~g~P~P~~i~W~k~g~~i~~~---~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          21 LSCEAVGPPEPVTIVWWRGTTKIGGP---APSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             EEEEEECSSSCCEEEEEETTEECSCS---EESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEecCCcceEEEEEECCEECCCC---CCcceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEEC
Confidence            5555555     68999999988765   22345566666789999999999999965 456777663

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.6e-07  Score=69.10  Aligned_cols=56  Identities=16%  Similarity=0.115  Sum_probs=46.2

Q ss_pred             eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEEecCC
Q psy7040         645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDKP  702 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v~~~p  702 (716)
                      .+.|+|+|+.+...  .....|.|.++..+|+|+|+|+|.|..|.. +....|+|..+|
T Consensus        32 ~~~w~k~g~~~~~~--~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          32 KVIYYKDGEALKYW--YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             EEEEEETTEECCSC--CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             EEEEEEeeeccccc--cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCC
Confidence            89999999987643  233679999999999999999999988765 455778888876

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.38  E-value=5.2e-07  Score=66.17  Aligned_cols=73  Identities=11%  Similarity=0.065  Sum_probs=56.2

Q ss_pred             EEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce-eeEEE
Q psy7040         436 IKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAK  513 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-~~s~~  513 (716)
                      ..+.+|+.+.|.|.+. +.|.+.+.|++++..+...        .....+.|.++...|.|.|+|.|.|..|.. +..+.
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~--------~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~   83 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN   83 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEccccccee--------ccccccEECccceeccceEEEEEEeCCCCeEEeeEE
Confidence            4588999999999986 4566689999999775321        123478899999999999999999988764 34455


Q ss_pred             EEE
Q psy7040         514 VTV  516 (716)
Q Consensus       514 ~~v  516 (716)
                      +.|
T Consensus        84 itV   86 (89)
T d1fnla2          84 ITI   86 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=2e-07  Score=71.10  Aligned_cols=79  Identities=23%  Similarity=0.365  Sum_probs=60.4

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc------------CCcEEEEeCCCeEEEEECCCCCCCceeEEEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV  501 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a  501 (716)
                      ..+.+.+|+.+.|.|.+.+.|.+.+.|++.+.....            ..+...    ...+|.|.++...|.|.|+|.|
T Consensus         9 ~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~tL~I~~v~~~D~G~Y~C~a   84 (102)
T d1f97a1           9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF----SSSGITFSSVTRKDNGEYTCMV   84 (102)
T ss_dssp             SEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE----ETTEEEESCCCGGGCEEEEEEE
T ss_pred             CcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe----cCCEEEEeECCccCCEEEEEEE
Confidence            457899999999999999999999999986533211            111111    1236999999999999999999


Q ss_pred             EcCCCceeeEEEEEE
Q psy7040         502 KNSWGTDKGTAKVTV  516 (716)
Q Consensus       502 ~n~~g~~~~s~~~~v  516 (716)
                      .|..|.......+.+
T Consensus        85 ~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          85 SEEGGQNYGEVSIHL   99 (102)
T ss_dssp             EETTSSSEEEEEEEE
T ss_pred             EECCCCEEEEEEEEE
Confidence            999998776655544

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=8.3e-08  Score=73.88  Aligned_cols=81  Identities=20%  Similarity=0.283  Sum_probs=59.9

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC----C----CeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND----D----KSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~----~----~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      .+.+.+|+.+.|.|.+.+.|.+.+.|++++..+...........    .    ....|.|.++...|.|.|+|.|.|..|
T Consensus        13 ~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G   92 (105)
T d1nbqa1          13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG   92 (105)
T ss_dssp             BCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTS
T ss_pred             eEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCC
Confidence            46688999999999999999999999987654332111100000    0    123799999999999999999999999


Q ss_pred             ceeeEEEEE
Q psy7040         507 TDKGTAKVT  515 (716)
Q Consensus       507 ~~~~s~~~~  515 (716)
                      .......+.
T Consensus        93 ~~~~~~~v~  101 (105)
T d1nbqa1          93 NSYGEVKVK  101 (105)
T ss_dssp             SCEECCEEE
T ss_pred             CEEEEEEEE
Confidence            886655444

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.1e-07  Score=71.76  Aligned_cols=82  Identities=20%  Similarity=0.076  Sum_probs=64.3

Q ss_pred             ccEEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEecc--CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         434 SDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIIS--KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      ..+...+|+.+.+.|.+. +.|.+.+.|++++..+..  ....++...  ...|.|.++...|.|.|+|.|.|..|....
T Consensus        10 ~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   87 (101)
T d1iray1          10 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH--KEKLWFVPAKVEDSGHYYCVVRNSSYCLRI   87 (101)
T ss_dssp             CCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEE--TTEEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEecc--CCEEEeccceecCCEEEEEEEECCCCeEEE
Confidence            346788899999999884 789999999998865432  222222222  237999999999999999999999999888


Q ss_pred             EEEEEEE
Q psy7040         511 TAKVTVL  517 (716)
Q Consensus       511 s~~~~v~  517 (716)
                      ++.+.|.
T Consensus        88 ~~~L~V~   94 (101)
T d1iray1          88 KISAKFV   94 (101)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8877775

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.8e-07  Score=68.84  Aligned_cols=62  Identities=11%  Similarity=0.001  Sum_probs=48.7

Q ss_pred             eccCce-e----eEEEEeCCeEeeec-ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPIS-L----ESQYLMNDKRVTID-NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~-~----~~~W~~~~~~~~~~-~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+. |    .+.|.+.+..+... .......|.|.++..+|+|.|+|.|.|..|..+.+.+|.|.
T Consensus        23 l~C~~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          23 LTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEEEECCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEecCCCCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEEC
Confidence            566543 3    89999977655322 23345789999999999999999999999988888888874

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=1.9e-07  Score=69.43  Aligned_cols=62  Identities=11%  Similarity=0.146  Sum_probs=49.1

Q ss_pred             eccCcee----eEEEEeCCeEeeeccc-----ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDNV-----DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~~-----~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|++++..+.....     .....|.|.++...|+|.|+|.|.|..|.......+.|.
T Consensus        21 l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          21 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI   91 (92)
T ss_dssp             ECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             EEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEEEE
Confidence            7777777    8999999988876611     112479999999999999999999988877666666653

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.31  E-value=6.9e-07  Score=69.10  Aligned_cols=61  Identities=18%  Similarity=0.126  Sum_probs=45.9

Q ss_pred             eccCcee----eEEEEeCCeEeeec-------------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID-------------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI  694 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~  694 (716)
                      |.|.+.|    .+.|++++......                   .......|.|.++...|+|.|+|.|.|..|...+++
T Consensus        25 l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~  104 (109)
T d2fdbp2          25 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA  104 (109)
T ss_dssp             EEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEECCCEEEEEE
Confidence            5666666    89999865432111                   122336899999999999999999999999999999


Q ss_pred             EEEE
Q psy7040         695 EVVV  698 (716)
Q Consensus       695 ~l~v  698 (716)
                      .|.|
T Consensus       105 ~L~V  108 (109)
T d2fdbp2         105 WLTV  108 (109)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9887

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=9.8e-07  Score=64.70  Aligned_cols=73  Identities=12%  Similarity=0.022  Sum_probs=56.3

Q ss_pred             EEEecCCeEEEEEEEecc-CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce-eeEEE
Q psy7040         436 IKVRAGSNFEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAK  513 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-~~s~~  513 (716)
                      ..+.+|+.+.|.|.+.+. +...+.|++++..+....        ....|.|.++..+|.|.|+|.|.|..|.. +..+.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~   81 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLN   81 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc--------ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEE
Confidence            458899999999999665 556899999998774321        23479999999999999999999987753 23344


Q ss_pred             EEE
Q psy7040         514 VTV  516 (716)
Q Consensus       514 ~~v  516 (716)
                      +.|
T Consensus        82 i~V   84 (89)
T d1f2qa2          82 ITV   84 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.6e-07  Score=73.60  Aligned_cols=37  Identities=38%  Similarity=0.526  Sum_probs=34.4

Q ss_pred             eEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         664 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      ..|.|.++...|+|.|+|.|.|.+|....++.|.|.+
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          94 SIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             EEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             EEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            6799999999999999999999999999999998863

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.5e-08  Score=72.07  Aligned_cols=61  Identities=13%  Similarity=0.109  Sum_probs=50.2

Q ss_pred             eccCcee----eEEEEeCCeEeeec----ccceeeEEEEccCCCCCcE-EEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTA-QYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y-~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|    .+.|++++.++...    .......|.|.++...|.| .|+|.|.|..|....++.|.|
T Consensus        22 l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          22 LRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             EEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCC
T ss_pred             EeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            6666666    89999998776654    3344478999999999999 699999999999988887765

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.28  E-value=4.1e-07  Score=66.76  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=43.8

Q ss_pred             eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEEec
Q psy7040         645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTD  700 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v~~  700 (716)
                      .+.|+++|+.+...  .....|.|.++..+|+|.|+|.|.|..|.. +....|+|++
T Consensus        34 ~~~W~kng~~~~~~--~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          34 KVTYLQNGKDRKYF--HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             EEEEEETTEEEEEE--EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEEccccccee--ccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            79999999987654  233579999999999999999999988865 3456777764

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=6.9e-07  Score=67.12  Aligned_cols=55  Identities=16%  Similarity=0.294  Sum_probs=41.6

Q ss_pred             eEEEEe-CCeEeeecc--------cceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEEe
Q psy7040         645 ESQYLM-NDKRVTIDN--------VDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVT  699 (716)
Q Consensus       645 ~~~W~~-~~~~~~~~~--------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v~  699 (716)
                      .+.|++ +|..+....        ......|.|.++...|+|.|+|.|.|..|.. +.+..|.|.
T Consensus        32 ~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          32 DISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             EEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence            789998 556554431        1233689999999999999999999999975 456667664

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=7.6e-07  Score=67.37  Aligned_cols=64  Identities=8%  Similarity=-0.036  Sum_probs=51.7

Q ss_pred             eccCcee-------eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         638 SLMPISL-------ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       638 ~~~~~~~-------~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      |.|.+.|       .+.|+++++.+...   .......|.|.....+|.|.|+|+|.|.+|....+..+.+.+|
T Consensus        24 L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~s~p   97 (103)
T d1iama1          24 LRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAP   97 (103)
T ss_dssp             EEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCC
T ss_pred             EEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeEcCC
Confidence            5566655       58899999998776   3334478999999999999999999999999888887777553

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.25  E-value=3.1e-07  Score=68.67  Aligned_cols=54  Identities=15%  Similarity=0.036  Sum_probs=43.7

Q ss_pred             eccCcee-----eEEEEeCCeEeeec-----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCce
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTID-----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ  691 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~  691 (716)
                      |.|.+.|     .+.|+++|..+...     .......|.|.++..+|+|.|+|.|.|..|...
T Consensus        22 l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1          22 LECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             ECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence            6777776     68999999988655     122236799999999999999999999999753

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=5.4e-07  Score=66.54  Aligned_cols=62  Identities=11%  Similarity=0.066  Sum_probs=49.6

Q ss_pred             eccCcee---eEEEEeCCeEeeeccc----ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL---ESQYLMNDKRVTIDNV----DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~~~----~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|   .+.|+++|..+.....    .....|.|.++.+.|+|.|+|.|.|..|....+..|.+.
T Consensus        17 l~C~~~g~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~~   85 (92)
T d1olza1          17 LKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKH   85 (92)
T ss_dssp             ECCCCSCTTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEE
T ss_pred             EEEEeeccCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEEE
Confidence            7888887   8999999988766521    122579999999999999999999999987766655443

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=5.2e-07  Score=68.03  Aligned_cols=64  Identities=14%  Similarity=0.178  Sum_probs=51.3

Q ss_pred             eccCce-e----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         638 SLMPIS-L----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       638 ~~~~~~-~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      +.|.+. +    .+.|+++|..+...      .......|.|.++...|+|.|+|.|.|..|....++.|.|...
T Consensus        22 l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~~   96 (101)
T d1iray1          22 RPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN   96 (101)
T ss_dssp             ECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEeC
Confidence            777664 2    89999988654322      1122368999999999999999999999999999999999864

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.23  E-value=2.7e-07  Score=69.42  Aligned_cols=60  Identities=15%  Similarity=0.166  Sum_probs=46.8

Q ss_pred             eccCcee----eEEEEeCCeEeeecc-----cceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN-----VDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVV  697 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~  697 (716)
                      |.|.+.|    .+.|+++|..+....     ......+.|..+...|+|.|+|.|.|..|.. +.++.|.
T Consensus        27 l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          27 LTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             ECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            6777777    899999999886651     1222678888899999999999999999976 3456553

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=8.4e-07  Score=67.38  Aligned_cols=62  Identities=19%  Similarity=0.238  Sum_probs=45.6

Q ss_pred             eccCcee-----eEEEEeCCeEeeec------------ccceeeEEEEccCC-CCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTID------------NVDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~------------~~~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|     .+.|++++......            .......|.|.++. ..|+|.|+|.|.|..|..+....|.|+
T Consensus        22 l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          22 LVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEEC
Confidence            5566655     68999865322111            12233689999998 579999999999999999988888874

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.4e-07  Score=69.28  Aligned_cols=75  Identities=11%  Similarity=0.018  Sum_probs=53.2

Q ss_pred             ccEEEecCCeEEEEEEEec-c--CCCeEEEEeCCeEeccCCcEEEEeCC--CeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIG-E--PIPTKEWLCNDITIISKDRFKIVNDD--KSTKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~-~--p~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      ....+..|..+.|+|.+.| .  |.+.+.|++++..+............  ....|.+.....++.+.|+|+|.|..|..
T Consensus        10 ~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~   89 (106)
T d1zxqa1          10 QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR   89 (106)
T ss_dssp             ESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGG
T ss_pred             CCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCC
Confidence            3456889999999999976 3  45579999999887543222211111  23456777777788889999999988754

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=5.9e-07  Score=67.67  Aligned_cols=48  Identities=17%  Similarity=0.211  Sum_probs=39.3

Q ss_pred             eEEEEeCCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCCCCcee
Q psy7040         645 ESQYLMNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV  692 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~  692 (716)
                      .+.|+++|+++..+.   ......|.|.++...|+|.|+|.|.|..|....
T Consensus        36 ~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~   86 (103)
T d1iray2          36 KLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY   86 (103)
T ss_dssp             CCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             EEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEEE
Confidence            799999999987652   122267999999999999999999998886543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2e-07  Score=73.06  Aligned_cols=65  Identities=20%  Similarity=0.207  Sum_probs=51.2

Q ss_pred             eccCcee-----eEEEEeCCeEeeec------------ccceeeEEEEccCCCCC-cEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTID------------NVDYFTKITIRPLQRSD-TAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~------------~~~~~~~~~i~~l~~~~-~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|     .+.|++++..+...            .......|.|.++...| .|.|+|.|.|..|..+.++.|.|.
T Consensus        26 l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          26 IKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             CCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             EEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEE
Confidence            6666655     68999998877654            11122469999999998 699999999999999999999887


Q ss_pred             cCC
Q psy7040         700 DKP  702 (716)
Q Consensus       700 ~~p  702 (716)
                      ..+
T Consensus       106 ~~~  108 (115)
T d2crya1         106 GSE  108 (115)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            644

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=5e-07  Score=69.15  Aligned_cols=61  Identities=18%  Similarity=0.176  Sum_probs=47.6

Q ss_pred             eccCce-e----eEEEEeCCeEeeecc-------------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPIS-L----ESQYLMNDKRVTIDN-------------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~-~----~~~W~~~~~~~~~~~-------------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+. |    .+.|++++..+....             ......|.|.++...|.|.|+|.|.|..|...++..|.|
T Consensus        22 l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          22 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             ECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCC
T ss_pred             EEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceEEEEEEEE
Confidence            778764 4    899999998875541             112257899999999999999999999999977655443

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=6.2e-07  Score=69.41  Aligned_cols=64  Identities=11%  Similarity=0.060  Sum_probs=47.5

Q ss_pred             eccCce-e----eEEEEeCCeEeeec--------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCcee--eEEE
Q psy7040         638 SLMPIS-L----ESQYLMNDKRVTID--------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV--FIEV  696 (716)
Q Consensus       638 ~~~~~~-~----~~~W~~~~~~~~~~--------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~--s~~l  696 (716)
                      |.|.+. |    .+.|++++..+...              .......|.|.++...|+|.|+|.|.|.+|....  ...|
T Consensus        22 L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l  101 (110)
T d1f97a2          22 LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM  101 (110)
T ss_dssp             EEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEE
T ss_pred             EEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEE
Confidence            666553 3    99999999877544              0112247899999999999999999999998855  4556


Q ss_pred             EEecC
Q psy7040         697 VVTDK  701 (716)
Q Consensus       697 ~v~~~  701 (716)
                      .|.+.
T Consensus       102 ~V~~l  106 (110)
T d1f97a2         102 DAVEL  106 (110)
T ss_dssp             EEESS
T ss_pred             EEEec
Confidence            66653

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8.7e-07  Score=65.93  Aligned_cols=59  Identities=17%  Similarity=0.295  Sum_probs=45.3

Q ss_pred             eccCcee---eEEEEeCCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL---ESQYLMNDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |.|.+.+   .+.|+++|.++..+       ..+....|.|.++...|+|.|+|.|.|    ...++.|.|.+
T Consensus        26 l~c~v~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n----~~~s~~l~V~E   94 (94)
T d1pd6a_          26 LTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTELFVKE   94 (94)
T ss_dssp             EEEECSSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT----EEECCEEEEEC
T ss_pred             EEEEECCCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee----EEEEEEEEEEC
Confidence            5555544   89999999998765       223347899999999999999999977    45566777753

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8.8e-07  Score=67.56  Aligned_cols=63  Identities=14%  Similarity=0.166  Sum_probs=46.4

Q ss_pred             eccCcee-----eEEEEeCCeEeeec-----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEEEec
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTID-----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~-----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~v~~  700 (716)
                      |.|.+.|     .+.|+++++.+...           .......|.|.++...|+|.|+|.|.|..|... .+..|.|.+
T Consensus        23 L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          23 LECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEEE
Confidence            5555554     79999987655332           111224699999999999999999999999754 577888764

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1e-06  Score=64.99  Aligned_cols=59  Identities=17%  Similarity=0.161  Sum_probs=45.7

Q ss_pred             eccCcee---eEEEEeCCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL---ESQYLMNDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |.|.+.+   .+.|+++|.++..+        ..+....|.|.++.++|+|.|+|.|.|    ...++.|.|..
T Consensus        20 l~C~v~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~a~l~V~~   89 (90)
T d1x44a1          20 LECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLSVDL   89 (90)
T ss_dssp             EEEECSSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEEEEC
T ss_pred             EEEEECCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ceEEEEEEEEE
Confidence            5555544   89999999988665        122336899999999999999999987    45678888865

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.3e-07  Score=74.06  Aligned_cols=91  Identities=18%  Similarity=0.280  Sum_probs=66.5

Q ss_pred             CCcccccccccEEEecCCeEEEEEEEecc-CCCeEEEEeCCeEeccC--CcEEEEe--C--CCeEEEEECCCCCCC-cee
Q psy7040         425 SPYINRDQLSDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDITIISK--DRFKIVN--D--DKSTKLKVFDSKRGD-SGI  496 (716)
Q Consensus       425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~~~~~~--~~~~~~~--~--~~~~~l~i~~l~~~~-~~~  496 (716)
                      ||.+.  .+..+.+..|+.+.|.|.+.+. |.+.+.|++++..+...  .++.+..  .  +....|.|.++...| .|.
T Consensus         7 Pp~i~--~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~   84 (115)
T d2crya1           7 PPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI   84 (115)
T ss_dssp             SCCEE--EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSC
T ss_pred             CCEEe--cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeE
Confidence            45443  2344567889999999999985 55679999999887543  2333322  1  123579999999998 699


Q ss_pred             EEEEEEcCCCceeeEEEEEEE
Q psy7040         497 YTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       497 y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      |+|.|.|..|..+.++.+.+.
T Consensus        85 Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          85 YNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             EEEEEECSSCEEEEEECCCCS
T ss_pred             EEEEEEECCCeEEEEEEEEEE
Confidence            999999999998877766553

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.13  E-value=1.7e-06  Score=62.78  Aligned_cols=67  Identities=19%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             ccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      ....+.+|+.+.|.|.+.+.+.+ .+.|++++..+...          ...|.|.++..+|.|.|+|.|.|..+....
T Consensus        12 ~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~----------~~~l~i~~v~~~dsG~Y~C~a~ns~~S~~v   79 (85)
T d2fcba1          12 QWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH----------TQPSYRFKANNNDSGEYTCQTGQTSLSDPV   79 (85)
T ss_dssp             CCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC----------CSSEEEEECCGGGCEEEEEECTTSBCCCCE
T ss_pred             CCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc----------ccceEEeeccccCCcEEEEECCCCcccccE
Confidence            34678899999999999888766 58899998877532          336888999999999999999987665543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.8e-06  Score=63.37  Aligned_cols=77  Identities=10%  Similarity=0.068  Sum_probs=57.6

Q ss_pred             EEEecCCeEEEEEEEec-cCCC--eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040         436 IKVRAGSNFEFDINVIG-EPIP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  512 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~-~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~  512 (716)
                      ..+..|..+.|.|.+.| .|.+  .+.|++++..+....   .........|.|.....++.|.|+|+|.|..|......
T Consensus        14 ~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~---~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~   90 (103)
T d1iama1          14 SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP---AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLEL   90 (103)
T ss_dssp             SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE---CCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCE
T ss_pred             ceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccc---cccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeE
Confidence            45889999999999986 5555  578999998874321   11222355789999999999999999999998765544


Q ss_pred             EEE
Q psy7040         513 KVT  515 (716)
Q Consensus       513 ~~~  515 (716)
                      .+.
T Consensus        91 ~~~   93 (103)
T d1iama1          91 FEN   93 (103)
T ss_dssp             EEE
T ss_pred             eee
Confidence            433

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.08  E-value=5.5e-06  Score=59.78  Aligned_cols=66  Identities=18%  Similarity=0.166  Sum_probs=52.5

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCe-EEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~  509 (716)
                      ....+.+|+.+.|.|.+.+.|.+. +.|++++..+..          ....|.|.++...|.|.|+|.|.|..+..+
T Consensus        13 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~a~~s~~S~~   79 (84)
T d1fnla1          13 QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQTNLSTLSDP   79 (84)
T ss_dssp             CCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEECSSSCCCCC
T ss_pred             CCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee----------cceeeEecCCcccCCEEEEEEccCCCcccc
Confidence            346789999999999999988875 556777766532          234799999999999999999988765443

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=3.5e-06  Score=64.60  Aligned_cols=60  Identities=17%  Similarity=0.278  Sum_probs=47.0

Q ss_pred             eccCcee----eEEEEeCCeEeeecc------------------cceeeEEEEccCCCCCcE-EEEEEEEcCCCCceeeE
Q psy7040         638 SLMPISL----ESQYLMNDKRVTIDN------------------VDYFTKITIRPLQRSDTA-QYTVTATNSQGKDQVFI  694 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~~------------------~~~~~~~~i~~l~~~~~y-~y~~~a~n~~G~~~~s~  694 (716)
                      |.|.+.|    .+.|+++|..+....                  ......|.|.++...|.| .|+|.|.|..|......
T Consensus        22 l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i  101 (107)
T d1iray3          22 LICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI  101 (107)
T ss_dssp             EEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECSSCEEEEEE
T ss_pred             EEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeCCCeEEEEE
Confidence            6666666    899999998765330                  011257999999999999 59999999999888777


Q ss_pred             EEE
Q psy7040         695 EVV  697 (716)
Q Consensus       695 ~l~  697 (716)
                      .|.
T Consensus       102 ~L~  104 (107)
T d1iray3         102 QLI  104 (107)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.99  E-value=6.9e-07  Score=68.13  Aligned_cols=56  Identities=16%  Similarity=0.039  Sum_probs=43.4

Q ss_pred             eccCc-ee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceee
Q psy7040         638 SLMPI-SL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF  693 (716)
Q Consensus       638 ~~~~~-~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s  693 (716)
                      |.|.+ .|    .+.|+++|..+...      .......|.|.++.+.|+|.|+|.|.|..|....+
T Consensus        24 l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          24 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             ECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             EEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            77776 44    89999998765432      11223579999999999999999999999987655

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.8e-06  Score=63.56  Aligned_cols=38  Identities=16%  Similarity=0.354  Sum_probs=32.3

Q ss_pred             eeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEEEe
Q psy7040         662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVT  699 (716)
Q Consensus       662 ~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~v~  699 (716)
                      ....|.|.++.++|+|.|+|.|.|..|... ..+.|.|+
T Consensus        58 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          58 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence            346799999999999999999999999874 44788774

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.7e-06  Score=66.27  Aligned_cols=62  Identities=19%  Similarity=0.154  Sum_probs=45.4

Q ss_pred             eccCcee----eEEEEeCCeEeeec--------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID--------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~--------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|++++..+...              .......|.|.++...|.|.|+|.|.|..|.......|.|.
T Consensus        24 L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          24 LSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECC
T ss_pred             EEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCCCEEEEEEEEEE
Confidence            4455554    78999976554432              01112479999999999999999999999999877776653

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.5e-06  Score=62.90  Aligned_cols=58  Identities=10%  Similarity=0.167  Sum_probs=43.7

Q ss_pred             eccCcee-----eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.|     +++|+|++..+...   .......|.|.++..+|+|.|+|.|.|..+.   +..|.|
T Consensus        26 L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~---t~~l~V   91 (93)
T d1n26a1          26 LTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAG---TVHLLV   91 (93)
T ss_dssp             EECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSCSC---EEEEEE
T ss_pred             EEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcccc---EEEEEE
Confidence            7888776     78999998877554   2222367999999999999999999876543   445554

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.97  E-value=6.7e-07  Score=65.65  Aligned_cols=59  Identities=14%  Similarity=0.124  Sum_probs=45.5

Q ss_pred             eccCcee---eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL---ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |.|.+.+   .+.|+++|.++..+      ..+....|.|.++.+.|+|.|+|.|.|..    .++.|.|.+
T Consensus        21 ~~c~vs~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~----~sa~l~V~e   88 (89)
T d1tiua_          21 FEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK----SAANLKVKE   88 (89)
T ss_dssp             EEEBCSSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB----CCEEEEEEC
T ss_pred             EEEEECCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE----EEEEEEEEE
Confidence            4444433   88999999988766      33445789999999999999999987754    467787764

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.4e-06  Score=61.51  Aligned_cols=77  Identities=17%  Similarity=0.149  Sum_probs=57.0

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc----------CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS----------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~----------~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      .+....|..+.|.|.+. .|.+.+.|++++..+..          ..+.++.......+|.|.++.+.|.|.|+|.|.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            46778899999999865 68889999998876531          11112222334568999999999999999999998


Q ss_pred             CCceeeEE
Q psy7040         505 WGTDKGTA  512 (716)
Q Consensus       505 ~g~~~~s~  512 (716)
                      .+......
T Consensus        83 ~~t~~~~l   90 (93)
T d1ccza1          83 TDTMKFFL   90 (93)
T ss_dssp             CSCEEEEE
T ss_pred             CcEEEEEE
Confidence            77655433

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=5.3e-06  Score=59.54  Aligned_cols=66  Identities=17%  Similarity=0.159  Sum_probs=49.9

Q ss_pred             cEEEecCCeEEEEEEEeccCCCe-EEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      ...+.+|+.+.|.|.+.+.|.+. +.|++++..+..          ....|.|.++..+|.|.|+|.|.|..+..+.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~~v   76 (82)
T d1f2qa1          10 WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE----------TNSSLNIVNAKFEDSGEYKCQHQQVNESEPV   76 (82)
T ss_dssp             CSEEETTCCEEEECCTTCC----CCEEEETTEECSC----------CSSEEEECSCCGGGCEEEEEECTTSSCCCCE
T ss_pred             CeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec----------ccceeEECCCChhhCCcEEEEecCCCCcccE
Confidence            35688999999999999998875 567788776543          2347999999999999999999987665543

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=4.8e-06  Score=63.12  Aligned_cols=62  Identities=16%  Similarity=0.136  Sum_probs=44.5

Q ss_pred             eccCcee----eEEEEeCCeEeeec--------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL----ESQYLMNDKRVTID--------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~----~~~W~~~~~~~~~~--------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.|    .+.|++++......              ......+|.|.++...|.|.|+|.|.|..|....+..|.|.
T Consensus        21 l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          21 LTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEEE
Confidence            5555554    78998854332221              01112469999999999999999999999999877777664

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.90  E-value=1.4e-06  Score=66.92  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=55.1

Q ss_pred             EEEecCCeEEEEEEE-eccCCCeEEEEeCCeEeccCC-------cEEEEeCCCeEEEEECCCCCCCce---eEEEEEEcC
Q psy7040         436 IKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISKD-------RFKIVNDDKSTKLKVFDSKRGDSG---IYTLAVKNS  504 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~-------~~~~~~~~~~~~l~i~~l~~~~~~---~y~~~a~n~  504 (716)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|++++..+....       ++.+.   ....|.|.++...|.|   .|.|.|.|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~gd~g~Y~C~A~N~   88 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG---PDGNLYFTIVTKEDVSDIYKYVCTAKNA   88 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC---TTSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccc---cccccEEeeeEeeccCCceEEEEEEEeC
Confidence            345689999999997 899999999999876543221       12221   2346888888887766   799999999


Q ss_pred             CCceeeEE
Q psy7040         505 WGTDKGTA  512 (716)
Q Consensus       505 ~g~~~~s~  512 (716)
                      .|......
T Consensus        89 ~g~~~~~~   96 (111)
T d1biha2          89 AVDEEVVL   96 (111)
T ss_dssp             TCSSCEEE
T ss_pred             CCCceEEE
Confidence            99876554

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=8.2e-06  Score=61.94  Aligned_cols=63  Identities=3%  Similarity=-0.097  Sum_probs=46.1

Q ss_pred             eccCcee-------eEEEEeCCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040         638 SLMPISL-------ESQYLMNDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD  700 (716)
Q Consensus       638 ~~~~~~~-------~~~W~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~  700 (716)
                      |.|.+.|       ++.|+++|+++...        .......|.|.....+|.++|+|+|.|.+|.......+.+.+
T Consensus        22 l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~~~~~s~   99 (106)
T d1zxqa1          22 IECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSA   99 (106)
T ss_dssp             EEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTCCEEEEECC
T ss_pred             EEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCCeeEecccC
Confidence            6666654       78999999998765        122235677777788889999999999998765555555543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.80  E-value=8.8e-06  Score=58.86  Aligned_cols=55  Identities=13%  Similarity=0.116  Sum_probs=42.0

Q ss_pred             eccCcee-----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+.+     .+.|+++|+.+...    ...|.|.++..+|+|.|+|+|.|..++..  ..|+|
T Consensus        24 L~C~~~~~~~~~~~~w~~~g~~~~~~----~~~l~i~~v~~~dsG~Y~C~a~ns~~S~~--v~l~V   83 (85)
T d2fcba1          24 LTCRGTHSPESDSIQWFHNGNLIPTH----TQPSYRFKANNNDSGEYTCQTGQTSLSDP--VHLTV   83 (85)
T ss_dssp             EEEECSSCCCTTCCEEEETTEECTTC----CSSEEEEECCGGGCEEEEEECTTSBCCCC--EEEEE
T ss_pred             EEEEEeeccceeEEEeeccccccccc----ccceEEeeccccCCcEEEEECCCCccccc--EEEEE
Confidence            6666555     68999999887543    46799999999999999999999765443  34554

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.71  E-value=3.5e-05  Score=55.39  Aligned_cols=48  Identities=13%  Similarity=0.132  Sum_probs=38.3

Q ss_pred             eccCcee-----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                      |.|.+.|     .+.|++++..+...    ...|.|.++...|+|.|+|.|.|..++
T Consensus        25 L~C~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~~s~~S   77 (84)
T d1fnla1          25 LKCQGAYSPEDNSTQWFHNESLISSQ----ASSYFIDAATVNDSGEYRCQTNLSTLS   77 (84)
T ss_dssp             EEEECCCBTTBCCCEEEETTEEEESS----CSEEEESSCCGGGCEEEEEECSSSCCC
T ss_pred             EEEEeccCCCCeEEEEeeeceeeeec----ceeeEecCCcccCCEEEEEEccCCCcc
Confidence            6666666     56788999877654    367999999999999999999886553

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.70  E-value=1.5e-05  Score=60.86  Aligned_cols=61  Identities=10%  Similarity=0.038  Sum_probs=44.4

Q ss_pred             eccCc-ee----eEEEEeCCeEeeecc----------cceeeEEEEccCCCCCcE---EEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPI-SL----ESQYLMNDKRVTIDN----------VDYFTKITIRPLQRSDTA---QYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~-~~----~~~W~~~~~~~~~~~----------~~~~~~~~i~~l~~~~~y---~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|.+ .|    .+.|++++..+....          ......|.|.++...|+|   .|+|.|.|.+|.......+.+
T Consensus        22 L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~~~~~  100 (111)
T d1biha2          22 LDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE  100 (111)
T ss_dssp             ECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEE
T ss_pred             EEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCceEEEEEEE
Confidence            88876 66    899999876654330          111257999999887766   899999999998876654433

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.8e-05  Score=58.50  Aligned_cols=59  Identities=19%  Similarity=0.165  Sum_probs=41.2

Q ss_pred             eccCcee---eEEEEeCCeEeeec----------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040         638 SLMPISL---ESQYLMNDKRVTID----------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV  698 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~----------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v  698 (716)
                      |.|....   .+.|.+++..+...                ......+|+|.+|.++|+|.|+|.|.|..|..+  +.|.|
T Consensus        15 l~c~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~--~~l~V   92 (93)
T d1ccza1          15 FHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMK--FFLYV   92 (93)
T ss_dssp             ECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCSCEE--EEEEE
T ss_pred             EEecCCCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCCcEEE--EEEEE
Confidence            5555444   78888887765432                011235899999999999999999999877554  44443

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=4.5e-05  Score=56.65  Aligned_cols=56  Identities=18%  Similarity=0.278  Sum_probs=41.4

Q ss_pred             eEEEEeCCeEeeec-------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCc--eeeEEEEEec
Q psy7040         645 ESQYLMNDKRVTID-------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKD--QVFIEVVVTD  700 (716)
Q Consensus       645 ~~~W~~~~~~~~~~-------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~--~~s~~l~v~~  700 (716)
                      .+.|++++..+...             ......+|.|.+|...|+|.|+|.+.|..|..  +..+.|.|.+
T Consensus        28 ~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~E   98 (98)
T d1hnga1          28 EVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILE   98 (98)
T ss_dssp             EEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEEC
T ss_pred             eeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEEC
Confidence            67788777655321             11122679999999999999999999999987  5566677653

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.5e-05  Score=55.82  Aligned_cols=56  Identities=9%  Similarity=0.062  Sum_probs=42.5

Q ss_pred             eccCcee-----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL-----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~-----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.+.+     .+.|++++..+...    ...|.|..+..+|+|.|+|.|.|..++.  ...|.|.
T Consensus        21 L~C~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~v~~~d~G~Y~C~a~~s~~S~--~v~l~V~   81 (82)
T d1f2qa1          21 LTCNGNNFFEVSSTKWFHNGSLSEET----NSSLNIVNAKFEDSGEYKCQHQQVNESE--PVYLEVF   81 (82)
T ss_dssp             EECCTTCC----CCEEEETTEECSCC----SSEEEECSCCGGGCEEEEEECTTSSCCC--CEEEEEE
T ss_pred             EEEEEeeeeeecceeeeeeeeeeecc----cceeEECCCChhhCCcEEEEecCCCCcc--cEEEEEE
Confidence            6676666     56788998877543    3679999999999999999999876544  3455553

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.40  E-value=0.00028  Score=55.46  Aligned_cols=42  Identities=19%  Similarity=0.179  Sum_probs=37.5

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCC
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA  704 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~  704 (716)
                      ..+|.|.+|...|+|.|+|.+.|..|..+....|.|.+|+-.
T Consensus        80 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          80 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW  121 (126)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTTTT
T ss_pred             eEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCCEE
Confidence            478999999999999999999999888888899999986543

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=0.0021  Score=50.14  Aligned_cols=83  Identities=13%  Similarity=0.243  Sum_probs=56.4

Q ss_pred             cEEEecCCeEEEEEEEeccC---CCeEEEEeCCeEec-----------------cCCcEEEEeC---CCeEEEEECCCCC
Q psy7040         435 DIKVRAGSNFEFDINVIGEP---IPTKEWLCNDITII-----------------SKDRFKIVND---DKSTKLKVFDSKR  491 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p---~~~~~W~~~~~~~~-----------------~~~~~~~~~~---~~~~~l~i~~l~~  491 (716)
                      .+.+..|+.+.|.|.+....   ...+.|++.+....                 ...+..+...   .+..+|.|.++..
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            37788999999999986333   33589988643210                 0112222222   2367999999999


Q ss_pred             CCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040         492 GDSGIYTLAVKNSWGTDKGTAKVTVL  517 (716)
Q Consensus       492 ~~~~~y~~~a~n~~g~~~~s~~~~v~  517 (716)
                      .|.|.|.|.+.+..+.....+.+.|.
T Consensus        91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             hHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            99999999999988777666555553

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=0.00065  Score=50.07  Aligned_cols=78  Identities=21%  Similarity=0.340  Sum_probs=53.0

Q ss_pred             EEEecCCeEEEEEEE-e-ccCCCeEEEEeCCeEecc----------CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         436 IKVRAGSNFEFDINV-I-GEPIPTKEWLCNDITIIS----------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v-~-~~p~~~~~W~~~~~~~~~----------~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      +....|..+.|.|.. . ......+.|++++..+..          ..+..+.   ...+|.|.++...|.|.|+|.+.+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~ngSL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL---ANGDLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC---TTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEEC---CCccEEEeCCCHHHCEEEEEEEEe
Confidence            456678888998852 2 223347999998766531          1122221   234799999999999999999999


Q ss_pred             CCCcee--eEEEEEE
Q psy7040         504 SWGTDK--GTAKVTV  516 (716)
Q Consensus       504 ~~g~~~--~s~~~~v  516 (716)
                      ..|...  ....+.|
T Consensus        82 ~~g~~~~~~~~~L~V   96 (98)
T d1hnga1          82 TNGTRILNKALDLRI   96 (98)
T ss_dssp             TTCCEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEE
Confidence            999874  3444444

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0021  Score=49.89  Aligned_cols=82  Identities=20%  Similarity=0.258  Sum_probs=55.7

Q ss_pred             cEEEecCCeEEEEEEEeccCCC----eEEEEeCCeEecc---------------------CCcEEEEeC---CCeEEEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIP----TKEWLCNDITIIS---------------------KDRFKIVND---DKSTKLKV  486 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~----~~~W~~~~~~~~~---------------------~~~~~~~~~---~~~~~l~i  486 (716)
                      .+.+..|+.+.|.|.+...+..    .+.|++.......                     ..+..+...   .+..+|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            4778899999999998754432    4789863211100                     112222221   13457999


Q ss_pred             CCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040         487 FDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  516 (716)
Q Consensus       487 ~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v  516 (716)
                      .++...|.|.|.|.+.+..|.....+.+.|
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEE
Confidence            999999999999999998887766666655

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0017  Score=47.30  Aligned_cols=44  Identities=16%  Similarity=0.095  Sum_probs=33.4

Q ss_pred             eEEEEeCCeEeeec-----ccceeeEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040         645 ESQYLMNDKRVTID-----NVDYFTKITIRPLQRSDTAQYTVTATNSQG  688 (716)
Q Consensus       645 ~~~W~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G  688 (716)
                      .+.|+++|......     .......|.|.++.+.++|.|+|...+..+
T Consensus        33 ~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1          33 EYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             EEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            77889988654322     233447899999999999999999877544

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0054  Score=44.49  Aligned_cols=71  Identities=8%  Similarity=-0.099  Sum_probs=48.9

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  508 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~  508 (716)
                      -.+..|.+++|.|... .....+.|++++........ .....+....+.|.++.+.+.|.|+|...+..+.+
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S   83 (95)
T d1olla1          13 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWS   83 (95)
T ss_dssp             SEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEEC
T ss_pred             CcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCCCCcc
Confidence            3477999999999753 33557888888764321100 00012345689999999999999999988766544

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.14  E-value=0.016  Score=42.83  Aligned_cols=70  Identities=10%  Similarity=0.095  Sum_probs=53.0

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+.+|+.+.|.|.........+.|++..  ...            ....++.....+....|.|.++.++|++.|-|
T Consensus         8 ~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyC   87 (106)
T d1a0ql1           8 SSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYC   87 (106)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEE
Confidence            4578999999999998876656678898732  110            12345666666778899999999999999999


Q ss_pred             EEEc
Q psy7040         500 AVKN  503 (716)
Q Consensus       500 ~a~n  503 (716)
                      .+.+
T Consensus        88 a~~~   91 (106)
T d1a0ql1          88 LQYY   91 (106)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            8754

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.11  E-value=0.0027  Score=47.44  Aligned_cols=74  Identities=19%  Similarity=0.202  Sum_probs=49.8

Q ss_pred             EecCCeEEEEEEEeccCCCeEEEEeCCeEecc-------------------CCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-------------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       438 ~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      +.+|+.+.|.|.........+.|++.......                   ..+..+  . .+.+|.|.++..+|.|.|+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l--~-~ngSL~I~~v~~~D~G~Y~   87 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII--Y-SNGSLLFQMITMKDMGVYT   87 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEE--C-TTSCEEECSCCGGGCEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEE--c-ccccEEEcCCCchhCEEEE
Confidence            55899999999754444667999986532110                   112222  2 2348999999999999999


Q ss_pred             EEEEcCCCc-eeeEEEE
Q psy7040         499 LAVKNSWGT-DKGTAKV  514 (716)
Q Consensus       499 ~~a~n~~g~-~~~s~~~  514 (716)
                      |.+.+..+. ...+..+
T Consensus        88 c~v~~~~~~~~~~~v~L  104 (107)
T d1l6za1          88 LDMTDENYRRTQATVRF  104 (107)
T ss_dssp             EEEEETTEEECCCCEEE
T ss_pred             EEEEECCCCEEEEEEEE
Confidence            999887653 3334444

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.10  E-value=0.011  Score=43.87  Aligned_cols=70  Identities=11%  Similarity=0.099  Sum_probs=52.1

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeC--CeEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+.+|+.+.|.|.........+.|++.  +...            ....++.....++...|.|.++.++|++.|-|
T Consensus         9 ~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (106)
T d1i8ka_           9 ASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYC   88 (106)
T ss_dssp             SEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeE
Confidence            357789999999999886655567889853  2111            12345565566678899999999999999999


Q ss_pred             EEEc
Q psy7040         500 AVKN  503 (716)
Q Consensus       500 ~a~n  503 (716)
                      .+.+
T Consensus        89 a~~~   92 (106)
T d1i8ka_          89 LQSF   92 (106)
T ss_dssp             EECS
T ss_pred             ecCc
Confidence            7654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.002  Score=47.43  Aligned_cols=54  Identities=6%  Similarity=-0.019  Sum_probs=34.8

Q ss_pred             eccCcee---eEEEEeCCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCce
Q psy7040         638 SLMPISL---ESQYLMNDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ  691 (716)
Q Consensus       638 ~~~~~~~---~~~W~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~  691 (716)
                      |.|....   .+.|+++|......       .......|.|.++...|+|.|+|...|..+.+.
T Consensus        26 L~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~   89 (99)
T d1ucta1          26 IQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFR   89 (99)
T ss_dssp             EEECCCTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred             EEEcCCCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccC
Confidence            4554433   67788766421111       122336799999999999999999988655333

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.08  E-value=0.02  Score=43.11  Aligned_cols=73  Identities=21%  Similarity=0.355  Sum_probs=51.1

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEe------------ccCCcEE--EEeCCCeEEEEECCCCCCCcee
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI------------ISKDRFK--IVNDDKSTKLKVFDSKRGDSGI  496 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~------------~~~~~~~--~~~~~~~~~l~i~~l~~~~~~~  496 (716)
                      +..+.+..|+.+.|.|.+.......+.|++..  ...            ....+..  .........|.|.++.++|++.
T Consensus         7 P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~   86 (113)
T d2bnqd1           7 PAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSAT   86 (113)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcE
Confidence            34578999999999999877666678898732  110            0112222  2223567799999999999999


Q ss_pred             EEEEEEcCC
Q psy7040         497 YTLAVKNSW  505 (716)
Q Consensus       497 y~~~a~n~~  505 (716)
                      |-|.+....
T Consensus        87 YyCa~~~~~   95 (113)
T d2bnqd1          87 YLCAVRPTS   95 (113)
T ss_dssp             EEEEEEESS
T ss_pred             EeEeEecCC
Confidence            999886443

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.08  E-value=0.012  Score=43.60  Aligned_cols=71  Identities=14%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--E------------eccCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T------------IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~------------~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      +..+.+.+|+.+.|.|.........+.|++...  .            .....++.....+....|.|.++.++|++.|-
T Consensus         8 P~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1ospl1           8 SSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYF   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEE
Confidence            345789999999999998766656789987321  1            01234566666677889999999999999999


Q ss_pred             EEEEc
Q psy7040         499 LAVKN  503 (716)
Q Consensus       499 ~~a~n  503 (716)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1ospl1          88 CQQYW   92 (107)
T ss_dssp             EEECS
T ss_pred             Eeecc
Confidence            97653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.03  E-value=0.018  Score=42.79  Aligned_cols=70  Identities=11%  Similarity=0.124  Sum_probs=53.5

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+.+|+.+.+.|.........+.|++..  ...            ....++..........|.|.+++++|++.|-|
T Consensus         9 ~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyC   88 (107)
T d1kcvl1           9 KSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYC   88 (107)
T ss_dssp             SEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEE
Confidence            4578999999999999877666679999642  110            12445666666778899999999999999999


Q ss_pred             EEEc
Q psy7040         500 AVKN  503 (716)
Q Consensus       500 ~a~n  503 (716)
                      .+..
T Consensus        89 a~~~   92 (107)
T d1kcvl1          89 GQSY   92 (107)
T ss_dssp             EECS
T ss_pred             EecC
Confidence            7653

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.015  Score=38.71  Aligned_cols=39  Identities=10%  Similarity=0.095  Sum_probs=31.8

Q ss_pred             eEEEEeCCeEeeec-ccceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040         645 ESQYLMNDKRVTID-NVDYFTKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       645 ~~~W~~~~~~~~~~-~~~~~~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      .-+|.|+|+++..+ ..+....|.|..  .+++|+|.|.-.+
T Consensus        30 ghrW~K~gkvl~ed~~~~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          30 GHRWLKGGVVLKEDALPGQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EEEEESSSEEEECTTCCCSEEEEEECG--GGCCEEEEEEEES
T ss_pred             eeEEeeCCEEccccCCCCCceEEEEec--CCCCceEEEEEcC
Confidence            56999999999987 445558899976  8899999999543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.98  E-value=0.015  Score=43.00  Aligned_cols=70  Identities=19%  Similarity=0.147  Sum_probs=51.8

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeC--CeEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+..|+.+.|.|.........+.|++.  +...            ....+......++...|.|.+++++|++.|-|
T Consensus         9 ~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   88 (107)
T d1c5cl1           9 SSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYC   88 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEE
Confidence            457789999999999987666667899863  2211            12334455555677899999999999999999


Q ss_pred             EEEc
Q psy7040         500 AVKN  503 (716)
Q Consensus       500 ~a~n  503 (716)
                      .+.+
T Consensus        89 a~~~   92 (107)
T d1c5cl1          89 LQYA   92 (107)
T ss_dssp             EECS
T ss_pred             ecCc
Confidence            7654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.019  Score=43.86  Aligned_cols=70  Identities=16%  Similarity=0.270  Sum_probs=49.9

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeC--CeEec----------------------cCCcEEE-EeCCCeEEEEEC
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITII----------------------SKDRFKI-VNDDKSTKLKVF  487 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~--~~~~~----------------------~~~~~~~-~~~~~~~~l~i~  487 (716)
                      +..+.+..|+.+.|.|.+.......+.|++.  +..+.                      ...++.. ...+....|+|.
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~   87 (122)
T d1nezg_           8 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLN   87 (122)
T ss_dssp             SSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEES
T ss_pred             CCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEc
Confidence            4467899999999999998887788999862  11100                      0112222 233455689999


Q ss_pred             CCCCCCceeEEEEEE
Q psy7040         488 DSKRGDSGIYTLAVK  502 (716)
Q Consensus       488 ~l~~~~~~~y~~~a~  502 (716)
                      +++++|+|.|-|.+.
T Consensus        88 ~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          88 KFSKENEGYYFCSVI  102 (122)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccCCCEEEEeeEe
Confidence            999999999999875

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.019  Score=43.46  Aligned_cols=72  Identities=11%  Similarity=0.133  Sum_probs=47.1

Q ss_pred             cccEEEecCCeEEEEEEEeccC---CCeEEEEeCCeEec--------------cCCcEEE--EeCCCeEEEEECCCCCCC
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEP---IPTKEWLCNDITII--------------SKDRFKI--VNDDKSTKLKVFDSKRGD  493 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p---~~~~~W~~~~~~~~--------------~~~~~~~--~~~~~~~~l~i~~l~~~~  493 (716)
                      +..+.+.+|+.+.|.|......   ...+.|++....-.              ...+..+  .......+|.|.++...|
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D   85 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   85 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence            4467889999999999875332   23467876431110              1222333  233456789999999999


Q ss_pred             ceeEEEEEEcC
Q psy7040         494 SGIYTLAVKNS  504 (716)
Q Consensus       494 ~~~y~~~a~n~  504 (716)
                      .|.|.|.+...
T Consensus        86 sG~Y~C~v~~~   96 (116)
T d1xeda_          86 SGRYKCGLGIN   96 (116)
T ss_dssp             CEEEEEEESCG
T ss_pred             CEEEEEEEEcC
Confidence            99999987543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.87  E-value=0.02  Score=42.53  Aligned_cols=70  Identities=14%  Similarity=0.175  Sum_probs=52.8

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--Ee------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--TI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+.+|+.+.|.|.........+.|++...  ..            ....++.....+....|.|.+++++|++.|-|
T Consensus         9 ~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1j1pl_           9 ATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC   88 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEE
Confidence            45789999999999988665566788986421  11            12345666667778899999999999999999


Q ss_pred             EEEc
Q psy7040         500 AVKN  503 (716)
Q Consensus       500 ~a~n  503 (716)
                      .+.+
T Consensus        89 a~~~   92 (107)
T d1j1pl_          89 QQAN   92 (107)
T ss_dssp             EECS
T ss_pred             EcCC
Confidence            7643

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.85  E-value=0.02  Score=42.36  Aligned_cols=68  Identities=13%  Similarity=0.196  Sum_probs=51.8

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCC--eE---e---------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCND--IT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      .+.+.+|+.+.|.|.........+.|++..  ..   +         ....++....++....|.|.+++++|++.|-|.
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence            478999999999999976666678998542  11   0         123456666667788999999999999999996


Q ss_pred             EE
Q psy7040         501 VK  502 (716)
Q Consensus       501 a~  502 (716)
                      +.
T Consensus        89 ~~   90 (106)
T d1lk3l1          89 QS   90 (106)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.81  E-value=0.021  Score=42.28  Aligned_cols=69  Identities=12%  Similarity=0.091  Sum_probs=52.0

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+.+|+.++|.|.........+.|++..  ...            ....++.....+....|.|.+++++|++.|-|
T Consensus         9 ~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyC   88 (107)
T d1mexl1           9 KFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFC   88 (107)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEE
Confidence            3578999999999999876656678998632  111            12345666666778899999999999999999


Q ss_pred             EEE
Q psy7040         500 AVK  502 (716)
Q Consensus       500 ~a~  502 (716)
                      .+.
T Consensus        89 a~~   91 (107)
T d1mexl1          89 QQY   91 (107)
T ss_dssp             EEC
T ss_pred             eEC
Confidence            764

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.79  E-value=0.032  Score=41.26  Aligned_cols=70  Identities=14%  Similarity=0.142  Sum_probs=51.5

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--E------------eccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T------------IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~------------~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+.+|+.+.|.|.........+.|++...  .            ......+....++....|.|.+++++|++.|-|
T Consensus         9 ~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyC   88 (108)
T d1jhll_           9 SYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYIC   88 (108)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEE
T ss_pred             CeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEE
Confidence            45778999999999998765566788886421  1            001334555566677899999999999999999


Q ss_pred             EEEc
Q psy7040         500 AVKN  503 (716)
Q Consensus       500 ~a~n  503 (716)
                      .+.+
T Consensus        89 A~~~   92 (108)
T d1jhll_          89 QQHN   92 (108)
T ss_dssp             EECS
T ss_pred             eeCC
Confidence            6544

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=95.76  E-value=0.022  Score=42.15  Aligned_cols=71  Identities=11%  Similarity=0.052  Sum_probs=53.4

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCe-----E---------eccCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI-----T---------IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~-----~---------~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      +..+.+.+|+.+.|.|.........+.|++...     -         .....++.....+....|.|.+++++|++.|-
T Consensus         7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1op3k1           7 PSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYH   86 (106)
T ss_dssp             CSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEe
Confidence            346789999999999998766566788986421     0         01234566666777889999999999999999


Q ss_pred             EEEEc
Q psy7040         499 LAVKN  503 (716)
Q Consensus       499 ~~a~n  503 (716)
                      |.+..
T Consensus        87 Ca~~~   91 (106)
T d1op3k1          87 CQHYA   91 (106)
T ss_dssp             EEEEC
T ss_pred             eeeCC
Confidence            97653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=95.74  E-value=0.017  Score=42.53  Aligned_cols=69  Identities=13%  Similarity=0.149  Sum_probs=51.4

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCCe--Ee------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--TI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      .+.+.+|+.+.+.|.........+.|++...  ..            ....++..........|.|.+++++|++.|-|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            4778999999999988766556788986421  11            023345556666788999999999999999997


Q ss_pred             EEc
Q psy7040         501 VKN  503 (716)
Q Consensus       501 a~n  503 (716)
                      +.+
T Consensus        87 ~~~   89 (103)
T d8faba1          87 AWD   89 (103)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.72  E-value=0.027  Score=41.86  Aligned_cols=70  Identities=11%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--E------------eccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T------------IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~------------~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+.+|+.+.|.|.........+.|++...  .            .....++.....+....|.|.+++++|++.|-|
T Consensus        11 ~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyC   90 (109)
T d1bwwa_          11 SSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYC   90 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEE
Confidence            35789999999999998776666788986321  0            112345666666777899999999999999999


Q ss_pred             EEEc
Q psy7040         500 AVKN  503 (716)
Q Consensus       500 ~a~n  503 (716)
                      .+..
T Consensus        91 A~~~   94 (109)
T d1bwwa_          91 QQYQ   94 (109)
T ss_dssp             EECS
T ss_pred             eecC
Confidence            7653

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.011  Score=43.16  Aligned_cols=75  Identities=5%  Similarity=-0.001  Sum_probs=49.4

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      ..|..|+.++|.|... .+...+.|++++...... .............+.|.++...+.|.|+|...+..+.+..|
T Consensus        16 ~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~S   91 (99)
T d1ucta1          16 PVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYS   91 (99)
T ss_dssp             SEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEEC
T ss_pred             CceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCC
Confidence            3588999999999764 345578888866422111 11111122345579999999999999999999877655433

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=95.67  E-value=0.022  Score=42.18  Aligned_cols=70  Identities=11%  Similarity=0.094  Sum_probs=52.3

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--E------------eccCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T------------IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~------------~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      +..+.+.+|+.+.|.|.........+.|++...  .            .....++.....+....|.|.+++++|++.|-
T Consensus         8 P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Yy   87 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEE
Confidence            345789999999999998765566788886421  1            11234566666677889999999999999999


Q ss_pred             EEEE
Q psy7040         499 LAVK  502 (716)
Q Consensus       499 ~~a~  502 (716)
                      |.+.
T Consensus        88 Ca~~   91 (107)
T d1tjgl1          88 CQQL   91 (107)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.017  Score=43.20  Aligned_cols=58  Identities=16%  Similarity=0.091  Sum_probs=35.9

Q ss_pred             eEEEEeCCeEeeecc----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCce-------eeEEEEEecCC
Q psy7040         645 ESQYLMNDKRVTIDN----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-------VFIEVVVTDKP  702 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-------~s~~l~v~~~p  702 (716)
                      .+.|+++++.+....          ......|.+.-...++.-.|+|+|.|..+...       .+..|.|..+|
T Consensus        35 ~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          35 EIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             EEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             EEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccccccccceeEEeEEEeCC
Confidence            589999998876541          11113455554444455589999999876642       23346666554

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.011  Score=43.81  Aligned_cols=27  Identities=22%  Similarity=0.286  Sum_probs=23.4

Q ss_pred             eEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         664 TKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      .+|.|.+|+.+|+|.|.|.+.+..+..
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~V~~~~~~~   91 (105)
T d1dr9a1          65 LSIVILALRPSDEGTYECVVLKYEKDA   91 (105)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEECCTTS
T ss_pred             EEEEECcCChHHCeEEEEEEEeCCCCC
Confidence            689999999999999999988765544

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.014  Score=40.45  Aligned_cols=36  Identities=19%  Similarity=0.473  Sum_probs=31.2

Q ss_pred             eEEEEccCCCCCcEEEEEEEEcCCCCc--eeeEEEEEe
Q psy7040         664 TKITIRPLQRSDTAQYTVTATNSQGKD--QVFIEVVVT  699 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~--~~s~~l~v~  699 (716)
                      .+|.|..|..+|+|+|++.+.|..|..  ..++.|.|.
T Consensus        63 GtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          63 GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             CcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            789999999999999999999999987  555666654

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.58  E-value=0.027  Score=41.78  Aligned_cols=70  Identities=13%  Similarity=0.124  Sum_probs=52.2

Q ss_pred             cccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eE---e---------ccCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--IT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      +..+.+.+|+.+.|.|.........+.|++..  ..   +         ....++.....+....|.|.++.++|++.|-
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Yy   87 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYY   87 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEE
Confidence            34578899999999999876555668898732  11   0         0234555556677889999999999999999


Q ss_pred             EEEE
Q psy7040         499 LAVK  502 (716)
Q Consensus       499 ~~a~  502 (716)
                      |.+.
T Consensus        88 CA~~   91 (109)
T d1mqkl_          88 CQHH   91 (109)
T ss_dssp             EEEC
T ss_pred             Eeee
Confidence            9765

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.026  Score=40.99  Aligned_cols=68  Identities=18%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEe--ccC------------CcEEEEe---CCCeEEEEECCCCCCCceeEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--ISK------------DRFKIVN---DDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~--~~~------------~~~~~~~---~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      +...+|+.+.|.|.........+.|++.....  ...            .++....   .....+|.|.++++.|.|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            56788999999999887777789998754321  100            1111111   113457999999999999999


Q ss_pred             EEEEc
Q psy7040         499 LAVKN  503 (716)
Q Consensus       499 ~~a~n  503 (716)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99965

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.02  Score=43.14  Aligned_cols=70  Identities=19%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             ccEEEecCCeEEEEEEEeccC-CCeEEEEeCCeE-----e---------------ccCCcEEEEeCCCeEEEEECCCCCC
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDIT-----I---------------ISKDRFKIVNDDKSTKLKVFDSKRG  492 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p-~~~~~W~~~~~~-----~---------------~~~~~~~~~~~~~~~~l~i~~l~~~  492 (716)
                      ..+.+..|+.+.|.|.+.... ...+.|++....     +               ....++.....++...|.|.++.++
T Consensus         8 ~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~   87 (114)
T d1akjd_           8 LDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRE   87 (114)
T ss_dssp             CSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGG
T ss_pred             CcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCC
Confidence            356688999999999986543 446889873210     0               0123455566667789999999999


Q ss_pred             CceeEEEEEEc
Q psy7040         493 DSGIYTLAVKN  503 (716)
Q Consensus       493 ~~~~y~~~a~n  503 (716)
                      |++.|-|.+..
T Consensus        88 Dsg~YyCa~~~   98 (114)
T d1akjd_          88 NEGYYFCSALS   98 (114)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEeEeEcC
Confidence            99999998764

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.021  Score=41.17  Aligned_cols=66  Identities=11%  Similarity=0.063  Sum_probs=48.9

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      -.+..|.+++|.|...+.....+.|+|++.....  .  .........+.|.++.+.+.|+|+|......
T Consensus        14 ~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~--~--~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   79 (96)
T d1ucta2          14 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP--Q--HQSGEHPANFSLGPVDLNVSGIYRCYGWYNR   79 (96)
T ss_dssp             SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC--S--EEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CccCCCCeEEEEEeCCCCCceEEEEEECCcccce--E--EcCCCcccEEEEeccccccCcEEEEEEEcCC
Confidence            3588999999999765455567899998854321  1  1223456789999999999999999887543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.37  E-value=0.023  Score=42.79  Aligned_cols=71  Identities=23%  Similarity=0.357  Sum_probs=50.9

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeE--------------eccCCcEEEEe--CCCeEEEEECCCCCCCceeE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT--------------IISKDRFKIVN--DDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~--------------~~~~~~~~~~~--~~~~~~l~i~~l~~~~~~~y  497 (716)
                      ..+.+.+|+.+.|.|.........+.|++....              .....++....  .....+|.|.++.++|+|.|
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y   87 (114)
T d2cdea1           8 QSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASY   87 (114)
T ss_dssp             SEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEE
T ss_pred             CEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCccc
Confidence            457899999999999987766678999964311              00122233222  23567899999999999999


Q ss_pred             EEEEEcC
Q psy7040         498 TLAVKNS  504 (716)
Q Consensus       498 ~~~a~n~  504 (716)
                      .|.+...
T Consensus        88 ~Ca~~~~   94 (114)
T d2cdea1          88 ICVVSDR   94 (114)
T ss_dssp             EEEEECS
T ss_pred             ceeeecC
Confidence            9998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.31  E-value=0.052  Score=40.37  Aligned_cols=69  Identities=16%  Similarity=0.116  Sum_probs=47.9

Q ss_pred             cEEEecCCeEEEEEEEeccC-CCeEEEEeCC--eEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEP-IPTKEWLCND--ITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p-~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      .+.+.+|+.+.|.|...... ...+.|++..  ...            ....+..+........|.|.++.++|++.|.|
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   86 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYC   86 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEE
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEE
Confidence            47899999999999875433 3457898632  110            11222333344567789999999999999999


Q ss_pred             EEEc
Q psy7040         500 AVKN  503 (716)
Q Consensus       500 ~a~n  503 (716)
                      .+..
T Consensus        87 a~~~   90 (110)
T d2esvd1          87 IVVR   90 (110)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            8753

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.30  E-value=0.039  Score=40.79  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=51.8

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+.+|+.+.|.|.........+.|++..  ...            ....++.....+....|.|.++.++|++.|-|
T Consensus         9 ~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1d5il1           9 SSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYC   88 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEe
Confidence            4578999999999998866555668898542  110            12345666666677899999999999999999


Q ss_pred             EEEc
Q psy7040         500 AVKN  503 (716)
Q Consensus       500 ~a~n  503 (716)
                      .+..
T Consensus        89 a~~~   92 (107)
T d1d5il1          89 LQYD   92 (107)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            7653

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.026  Score=42.68  Aligned_cols=39  Identities=13%  Similarity=0.140  Sum_probs=29.1

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK  701 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~  701 (716)
                      ..+|.|.+|..+|+|.|.|.+............|.|.+.
T Consensus        73 ~~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          73 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             EEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             EEEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            368999999999999999987654333344566777654

>d2hyma1 b.1.2.1 (A:1-109) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-alpha/beta receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.12  Score=37.79  Aligned_cols=76  Identities=11%  Similarity=0.050  Sum_probs=52.1

Q ss_pred             CCCCCceEEEEeCC-eEEEEecCCCCCCCCccceEEEEEEcCC-CCcEEEe---cccCCCeEEecC--CCCCcEEEEEEE
Q psy7040          56 DPEGPLEVSNIHKD-GCTLKWNKPKDDGGEPLEGYLVEKYDPE-TGVWIPV---GKTREPEMDVTG--LTPGHEYKFRVK  128 (716)
Q Consensus        56 ~p~~~l~~~~~~~~-s~~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~---~~~~~~~~~i~~--L~~~~~y~~~v~  128 (716)
                      -++.|.+|.-...+ .-.|+|+++..  ..+-..|.|+|+..+ ...|..+   .....+.+.|++  +.+...|..||+
T Consensus         7 ~~~~P~nv~i~s~Nf~~iL~W~p~~~--s~~~~~YtVqy~~~~~~~~W~~v~~C~~it~t~CDLT~e~~~~~~~Y~~RV~   84 (109)
T d2hyma1           7 YTDESCTFKISLRNFRSILSWELKNH--SIVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLE   84 (109)
T ss_dssp             CTTCCCEEEEEESSSCEEEEEECCCS--SCCCCEEEEEEEETTCTTCCEECSSSSSBSCSEEECTTTCCCSSSCEEEEEE
T ss_pred             CCCCCeeEEEEEECCceEEEECCCCC--CCCCeEEEEEEEEEcccccCccchhhhCCCCCeEeCchhhccCCccEEEEEE
Confidence            35566666644444 67899997542  223457999997654 4568875   455568888887  456788999999


Q ss_pred             EEecC
Q psy7040         129 ALNKE  133 (716)
Q Consensus       129 a~~~~  133 (716)
                      |..+.
T Consensus        85 A~~G~   89 (109)
T d2hyma1          85 GFSGN   89 (109)
T ss_dssp             EEETT
T ss_pred             EEcCC
Confidence            98643

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=95.26  E-value=0.084  Score=39.21  Aligned_cols=71  Identities=15%  Similarity=0.276  Sum_probs=50.0

Q ss_pred             ccEEEecCCeEEEEEEEecc--CCCeEEEEeCC------eEeccCCcEEEEeC--CCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         434 SDIKVRAGSNFEFDINVIGE--PIPTKEWLCND------ITIISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~--p~~~~~W~~~~------~~~~~~~~~~~~~~--~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      ..+.+..|..+.|.|.+...  ....+.|++..      ..+....++....+  .....|.|.++.++|.+.|-|.+..
T Consensus         7 ~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   86 (112)
T d1sq2n_           7 RSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   86 (112)
T ss_dssp             SEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             CEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEec
Confidence            35778899999999988643  34578999732      22223344444333  3466899999999999999997754


Q ss_pred             C
Q psy7040         504 S  504 (716)
Q Consensus       504 ~  504 (716)
                      .
T Consensus        87 ~   87 (112)
T d1sq2n_          87 A   87 (112)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.26  E-value=0.032  Score=42.38  Aligned_cols=73  Identities=21%  Similarity=0.262  Sum_probs=46.3

Q ss_pred             ccEEEecCCeEEEEEEEecc----CCCeEEEEeCCeE------e---------c-c----CCcEEEEe--CCCeEEEEEC
Q psy7040         434 SDIKVRAGSNFEFDINVIGE----PIPTKEWLCNDIT------I---------I-S----KDRFKIVN--DDKSTKLKVF  487 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~----p~~~~~W~~~~~~------~---------~-~----~~~~~~~~--~~~~~~l~i~  487 (716)
                      ..+.+..|..+.|.|.....    ....+.|++....      +         . .    ..+..+..  ..+..+|.|.
T Consensus         7 ~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (119)
T d1neua_           7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIH   86 (119)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEEC
T ss_pred             CeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEEC
Confidence            45778899999999987532    2336889753210      0         0 0    01222221  2244689999


Q ss_pred             CCCCCCceeEEEEEEcCCC
Q psy7040         488 DSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       488 ~l~~~~~~~y~~~a~n~~g  506 (716)
                      ++...|+|.|.|.+.+..+
T Consensus        87 ~v~~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          87 NLDYSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             SCCGGGCEEEEEEEEC---
T ss_pred             CCChHHCEEEEEEEEECCC
Confidence            9999999999999988554

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.13  Score=36.78  Aligned_cols=65  Identities=15%  Similarity=0.121  Sum_probs=39.2

Q ss_pred             ecCCeEEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCCC-----eEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         439 RAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       439 ~~g~~~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      ..++.+.|.|.+.+ .|.+.+.|.+++..+............+     ...|.+.   ..+...|+|.+....-
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l   84 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHL   84 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTC
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCC
Confidence            35677889999965 7989999999998875433222222111     1233332   2344567777765543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.066  Score=39.41  Aligned_cols=73  Identities=10%  Similarity=0.063  Sum_probs=49.0

Q ss_pred             cEEEecCCeEEEEEEEeccCC----CeEEEEeCCeEec------------cCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPI----PTKEWLCNDITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~----~~~~W~~~~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      .+....|+.+.|.|.......    ..+.|.+++..+.            -..+..+.. .+..+|.|.++.+.|.|.|.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v~~~D~G~Y~   81 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYE   81 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcCChHHCeEEE
Confidence            467788999999997653221    2477877765431            012233322 23568999999999999999


Q ss_pred             EEEEcCCCce
Q psy7040         499 LAVKNSWGTD  508 (716)
Q Consensus       499 ~~a~n~~g~~  508 (716)
                      |.+.+..+..
T Consensus        82 C~V~~~~~~~   91 (105)
T d1dr9a1          82 CVVLKYEKDA   91 (105)
T ss_dssp             EEEEECCTTS
T ss_pred             EEEEeCCCCC
Confidence            9998755444

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.08  E-value=0.037  Score=41.31  Aligned_cols=69  Identities=22%  Similarity=0.277  Sum_probs=47.6

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEec------------cCCcEEE--EeCCCeEEEEECCCCCCCceeE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITII------------SKDRFKI--VNDDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~~------------~~~~~~~--~~~~~~~~l~i~~l~~~~~~~y  497 (716)
                      ..+.+.+|+.+.|.|.........+.|++..  ....            ...+...  ...+....|.|.++.++|++.|
T Consensus         7 ~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (110)
T d1u3ha1           7 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATY   86 (110)
T ss_dssp             SSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEE
T ss_pred             CEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeE
Confidence            3577899999999999876555568898642  1100            1112222  2234567899999999999999


Q ss_pred             EEEEE
Q psy7040         498 TLAVK  502 (716)
Q Consensus       498 ~~~a~  502 (716)
                      -|.+.
T Consensus        87 yCa~~   91 (110)
T d1u3ha1          87 FCAAS   91 (110)
T ss_dssp             EECCE
T ss_pred             eeeec
Confidence            99775

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.06  E-value=0.084  Score=39.46  Aligned_cols=72  Identities=21%  Similarity=0.308  Sum_probs=50.5

Q ss_pred             cccEEEecCCeEEEEEEEecc-CCCeEEEEeC--CeE-------------eccCCcEEEEeCC--CeEEEEECCCCCCCc
Q psy7040         433 LSDIKVRAGSNFEFDINVIGE-PIPTKEWLCN--DIT-------------IISKDRFKIVNDD--KSTKLKVFDSKRGDS  494 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~-p~~~~~W~~~--~~~-------------~~~~~~~~~~~~~--~~~~l~i~~l~~~~~  494 (716)
                      +..+.+.+|+.+.|.|..... ....+.|++.  +..             .....++.+....  ....|.|.+++++|+
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   85 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDS   85 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCC
Confidence            345789999999999998543 3346889863  211             1123455555543  456799999999999


Q ss_pred             eeEEEEEEcC
Q psy7040         495 GIYTLAVKNS  504 (716)
Q Consensus       495 ~~y~~~a~n~  504 (716)
                      +.|.|.+...
T Consensus        86 g~YyCa~~~~   95 (114)
T d3bp5a1          86 GIYLCGAISL   95 (114)
T ss_dssp             EEEEEEEECS
T ss_pred             eEEEEEEEeC
Confidence            9999988644

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=94.94  E-value=0.071  Score=39.75  Aligned_cols=72  Identities=13%  Similarity=0.136  Sum_probs=51.9

Q ss_pred             ccEEEecCCeEEEEEEEeccC---CCeEEEEeCC--eEe------------ccCCcEEEEeCCCeEEEEECCCCCCCcee
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP---IPTKEWLCND--ITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGI  496 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p---~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~  496 (716)
                      ..+.+.+|+.+.+.|......   ...+.|++..  ...            ....++......+...|.|.+++++|++.
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   87 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEAD   87 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEE
Confidence            357899999999999876532   2358898632  111            12345556666678899999999999999


Q ss_pred             EEEEEEcCC
Q psy7040         497 YTLAVKNSW  505 (716)
Q Consensus       497 y~~~a~n~~  505 (716)
                      |-|.+.+..
T Consensus        88 YyCa~~~~~   96 (112)
T d1lgva1          88 YYCSSYDGS   96 (112)
T ss_dssp             EEEEEECSS
T ss_pred             EEEeeecCC
Confidence            999876533

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.93  E-value=0.093  Score=39.01  Aligned_cols=70  Identities=19%  Similarity=0.246  Sum_probs=49.3

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEe------------ccCCcEEE--EeCCCeEEEEECCCCCCCceeE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI------------ISKDRFKI--VNDDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~------------~~~~~~~~--~~~~~~~~l~i~~l~~~~~~~y  497 (716)
                      ..+.+.+|+.+.|.|.........+.|++..  ...            ....++..  ........|.|.++.++|++.|
T Consensus         8 ~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1bd2d1           8 PSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVY   87 (111)
T ss_dssp             SEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             CEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEE
Confidence            3477899999999998876666678888632  111            01223332  2335678999999999999999


Q ss_pred             EEEEEc
Q psy7040         498 TLAVKN  503 (716)
Q Consensus       498 ~~~a~n  503 (716)
                      -|.+..
T Consensus        88 yCa~~~   93 (111)
T d1bd2d1          88 FCAAME   93 (111)
T ss_dssp             EEEEES
T ss_pred             EeeccC
Confidence            997753

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.90  E-value=0.077  Score=37.99  Aligned_cols=64  Identities=19%  Similarity=0.199  Sum_probs=44.0

Q ss_pred             CCeEEEEEEEeccCCCeEEEEeCCe--E-----------eccCCcEEEE--eCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         441 GSNFEFDINVIGEPIPTKEWLCNDI--T-----------IISKDRFKIV--NDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~~~~W~~~~~--~-----------~~~~~~~~~~--~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      |+.++|.|.........+.|++...  .           .....++...  .......|.|.++.++|++.|-|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            5678999988777777888986321  0           0112233333  3345678999999999999999987643

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=94.88  E-value=0.047  Score=40.46  Aligned_cols=70  Identities=11%  Similarity=0.101  Sum_probs=50.8

Q ss_pred             cccEEEecCCeEEEEEEEecc-CCCeEEEEeCC--eE---e---------ccCCcEEEEeCCCeEEEEECCCCCCCceeE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGE-PIPTKEWLCND--IT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~-p~~~~~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y  497 (716)
                      +..+.+..|+.+.+.|..... ....+.|++..  ..   +         ....++.....++...|.|.++.++|++.|
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~Y   87 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVY   87 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEE
Confidence            345789999999999987644 23457898642  11   1         123455666666778999999999999999


Q ss_pred             EEEEE
Q psy7040         498 TLAVK  502 (716)
Q Consensus       498 ~~~a~  502 (716)
                      -|.+.
T Consensus        88 yCa~~   92 (108)
T d2fx7l1          88 YCQQY   92 (108)
T ss_dssp             EEEEC
T ss_pred             eeecC
Confidence            99764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=94.79  E-value=0.15  Score=37.87  Aligned_cols=70  Identities=17%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             cccEEEecCCeEEEEEEEeccC--CCeEEEEeC--Ce----EeccCCcEEEEeC--CCeEEEEECCCCCCCceeEEEEEE
Q psy7040         433 LSDIKVRAGSNFEFDINVIGEP--IPTKEWLCN--DI----TIISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       433 ~~~~~~~~g~~~~~~~~v~~~p--~~~~~W~~~--~~----~~~~~~~~~~~~~--~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      +..+.+.+|..+.|.|.+....  ...+.|++.  +.    .+....++....+  .....|+|.+++++|++.|.|.+.
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   86 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAF   86 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeee
Confidence            3457889999999999997543  345889863  21    1223344444332  345689999999999999999774

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.025  Score=40.76  Aligned_cols=42  Identities=5%  Similarity=-0.001  Sum_probs=31.0

Q ss_pred             eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         645 ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       645 ~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      .+.|+|+|......  .......+.|.++.+.|+|+|+|.....
T Consensus        35 ~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          35 RFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             EEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            67889988632222  2234478999999999999999987654

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.16  Score=37.42  Aligned_cols=72  Identities=18%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             ccEEEecCCeEEEEEEEeccC--CCeEEEEeCCe--E------------eccCCcEEEEe--CCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP--IPTKEWLCNDI--T------------IISKDRFKIVN--DDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p--~~~~~W~~~~~--~------------~~~~~~~~~~~--~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+...+|+.+.|.|......  ...+.|++...  .            .....+..+..  ......|.|.+++++|.|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            347788999999999875443  23567986321  1            00123333332  346778999999999999


Q ss_pred             eEEEEEEcCC
Q psy7040         496 IYTLAVKNSW  505 (716)
Q Consensus       496 ~y~~~a~n~~  505 (716)
                      .|.|......
T Consensus        84 ~Y~C~v~~~~   93 (108)
T d1hkfa_          84 HYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEecCC
Confidence            9999887443

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.72  E-value=0.037  Score=41.65  Aligned_cols=71  Identities=20%  Similarity=0.191  Sum_probs=49.2

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEe-------------ccCCcEEEEe--CCCeEEEEECCCCCCCcee
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI-------------ISKDRFKIVN--DDKSTKLKVFDSKRGDSGI  496 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~-------------~~~~~~~~~~--~~~~~~l~i~~l~~~~~~~  496 (716)
                      ..+.+.+|+.+.+.|.........+.|++..  ...             ....++....  ......|.|.++.++|++.
T Consensus         8 ~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   87 (115)
T d1j8hd1           8 SHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAE   87 (115)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEE
T ss_pred             CeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCcc
Confidence            4578999999999999876666679998632  110             0111222222  2345579999999999999


Q ss_pred             EEEEEEcC
Q psy7040         497 YTLAVKNS  504 (716)
Q Consensus       497 y~~~a~n~  504 (716)
                      |-|.+...
T Consensus        88 YyCa~~~~   95 (115)
T d1j8hd1          88 YFCAVSES   95 (115)
T ss_dssp             EEEEEESS
T ss_pred             ceeeecCC
Confidence            99988653

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=94.71  E-value=0.066  Score=39.54  Aligned_cols=69  Identities=16%  Similarity=0.166  Sum_probs=51.2

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      .+.+.+|+.+.+.|.........+.|++..  ...            ....+.....++....|.|.+++++|++.|-|.
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence            477899999999998765555568898542  111            123455566667788999999999999999998


Q ss_pred             EEc
Q psy7040         501 VKN  503 (716)
Q Consensus       501 a~n  503 (716)
                      +..
T Consensus        89 ~~~   91 (109)
T d1w72l1          89 VWD   91 (109)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            754

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.70  E-value=0.028  Score=42.37  Aligned_cols=71  Identities=14%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--Eec------------cCCcEEEEe--CCCeEEEEECCCCCCCceeE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--TII------------SKDRFKIVN--DDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~~~------------~~~~~~~~~--~~~~~~l~i~~l~~~~~~~y  497 (716)
                      ..+.+.+|+.+.|.|.........+.|++...  ...            ...++.+..  ......|.|.+++++|++.|
T Consensus         9 ~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (115)
T d1lp9e1           9 GLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALY   88 (115)
T ss_dssp             SEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccc
Confidence            35789999999999999877777899987421  100            112222221  22456799999999999999


Q ss_pred             EEEEEcC
Q psy7040         498 TLAVKNS  504 (716)
Q Consensus       498 ~~~a~n~  504 (716)
                      .|.+...
T Consensus        89 yCa~~~~   95 (115)
T d1lp9e1          89 YCALFLA   95 (115)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEcC
Confidence            9977543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.014  Score=44.90  Aligned_cols=38  Identities=21%  Similarity=0.360  Sum_probs=32.6

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEe
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL  220 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~  220 (716)
                      ...+|+|.+++..|+|.|.|.+.+..|.....+.|.|.
T Consensus        86 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          86 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            35689999999999999999999988877777777764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.031  Score=40.51  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=20.4

Q ss_pred             eEEEEccCCCCCcEEEEEEEEc
Q psy7040         664 TKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      .+|.|.+|++.|+|.|.|.+.|
T Consensus        67 ~sL~I~~l~~~DsG~Y~C~v~~   88 (97)
T d2nxyb1          67 FPLIIKNLKIEDSDTYICEVED   88 (97)
T ss_dssp             CCEEECSCCGGGCEEEEEEETT
T ss_pred             EEEEECCCChHHCEEEEEEEec
Confidence            5799999999999999999866

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.64  E-value=0.021  Score=42.37  Aligned_cols=68  Identities=13%  Similarity=0.124  Sum_probs=49.4

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      .+.+.+|+.+.|.|.........+.|++..  ...            ....++.....++...|.|.+++++|++.|-|.
T Consensus        10 s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d3cx5k1          10 SLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQ   89 (107)
T ss_dssp             TCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEee
Confidence            466889999999998876666678998642  110            112334444556778999999999999999996


Q ss_pred             EE
Q psy7040         501 VK  502 (716)
Q Consensus       501 a~  502 (716)
                      +.
T Consensus        90 ~~   91 (107)
T d3cx5k1          90 HH   91 (107)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=94.62  E-value=0.071  Score=39.67  Aligned_cols=69  Identities=14%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             cEEEecCCeEEEEEEEeccC--CCeEEEEeCC--eE------------eccCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEP--IPTKEWLCND--IT------------IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p--~~~~~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      .+.+.+|+.+.|.|......  ...+.|++..  ..            .....++....++....|.|.+++++|++.|-
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY   88 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceE
Confidence            47899999999999876543  3458898531  11            11234566666677889999999999999999


Q ss_pred             EEEEc
Q psy7040         499 LAVKN  503 (716)
Q Consensus       499 ~~a~n  503 (716)
                      |.+..
T Consensus        89 CA~~~   93 (111)
T d1rzfl1          89 CGTWD   93 (111)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            98754

>d1xzwa1 b.1.12.1 (A:1-119) Purple acid phosphatase, N-terminal domain {Sweet potato (Ipomoea batatas) [TaxId: 4120]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

Probab=94.56  E-value=0.038  Score=41.63  Aligned_cols=58  Identities=17%  Similarity=0.280  Sum_probs=34.5

Q ss_pred             eCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc----------cC--CCeEEecCCCCCcEEEEEEE
Q psy7040          67 HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK----------TR--EPEMDVTGLTPGHEYKFRVK  128 (716)
Q Consensus        67 ~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~----------~~--~~~~~i~~L~~~~~y~~~v~  128 (716)
                      ..+++.|+|.-+....+.+    .|+|....+........          ..  ..+.+|.||+|++.|.|||-
T Consensus        36 ~~tsm~VsW~T~~~~~~~~----~V~yG~~~~~~~~~a~g~s~~~~~~~~~~~~~H~v~LtgL~P~T~Y~YrVG  105 (119)
T d1xzwa1          36 EGRGVIISWTTPYDKAGAN----KVFYWSENSKSQKRAMGTVVTYKYYNYTSAFIHHCTIKDLEYDTKYYYRLG  105 (119)
T ss_dssp             SSSCEEEEEEESSCCTTTT----EEEEEETTCCCCEEEECEEECCEETTEECCEEEEEEECCCCTTCEEEEEEC
T ss_pred             CCCEEEEEEECCCCCCCCC----EEEEcCCCCCCccEEEEEEEEeecccccCCeEEEEEECCCCCCCEEEEEEC
Confidence            3579999998643222222    45554443322221110          00  13689999999999999993

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.17  Score=37.38  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=43.4

Q ss_pred             EecCCeEEEEEEEec-cCCC--eEEEEeCCeEeccCCcEEEEeC-C---CeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         438 VRAGSNFEFDINVIG-EPIP--TKEWLCNDITIISKDRFKIVND-D---KSTKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       438 ~~~g~~~~~~~~v~~-~p~~--~~~W~~~~~~~~~~~~~~~~~~-~---~~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      +.+|..+.+.|.+.+ .|.+  .+.|++++..+........... +   ....|.+.-...++...|+|+|.+..+.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            679999999999965 5644  5889999887642111000000 0   1234555544444555899999987654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=94.55  E-value=0.096  Score=39.00  Aligned_cols=68  Identities=15%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             cEEEecCCeEEEEEEEeccC--CCeEEEEeCCeE-----e---------ccCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEP--IPTKEWLCNDIT-----I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p--~~~~~W~~~~~~-----~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      .+.+.+|+.+.|.|...+..  ...+.|++....     +         ...+++....++....|.|.+++++|++.|-
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            47789999999999986554  356889864311     0         1234556666677889999999999999999


Q ss_pred             EEEE
Q psy7040         499 LAVK  502 (716)
Q Consensus       499 ~~a~  502 (716)
                      |.+.
T Consensus        89 CA~~   92 (114)
T d2rhea_          89 CAAW   92 (114)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            9764

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.52  E-value=0.1  Score=39.23  Aligned_cols=71  Identities=21%  Similarity=0.339  Sum_probs=50.5

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEec-----------------cCCcEEEEe-CCCeEEEEECCCCCCCc
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITII-----------------SKDRFKIVN-DDKSTKLKVFDSKRGDS  494 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~~-----------------~~~~~~~~~-~~~~~~l~i~~l~~~~~  494 (716)
                      .+.+.+|+.+.|.|.........+.|++..  ..+.                 ...++.+.. .+....|.|.+++++|+
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Ds   89 (118)
T d2ij0c1          10 MVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDS   89 (118)
T ss_dssp             EEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGC
T ss_pred             eEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccC
Confidence            467899999999999877666788898632  1100                 123444443 33456799999999999


Q ss_pred             eeEEEEEEcCC
Q psy7040         495 GIYTLAVKNSW  505 (716)
Q Consensus       495 ~~y~~~a~n~~  505 (716)
                      +.|-|.+....
T Consensus        90 a~YyCa~~~~~  100 (118)
T d2ij0c1          90 GFYVCSALAGS  100 (118)
T ss_dssp             EEEEEEEECSS
T ss_pred             ceEEEEEecCC
Confidence            99999886443

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.49  E-value=0.094  Score=39.22  Aligned_cols=72  Identities=15%  Similarity=0.202  Sum_probs=48.5

Q ss_pred             ccEEEecCCeEEEEEEEecc-CCCeEEEEeC--CeEec-------------cCCc--EEEEeCCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIGE-PIPTKEWLCN--DITII-------------SKDR--FKIVNDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~-p~~~~~W~~~--~~~~~-------------~~~~--~~~~~~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+.+|+.+.|.|..... ....+.|++.  +....             ...+  ......+....|.|.++.++|+|
T Consensus         8 ~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   87 (114)
T d2ak4d1           8 TEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSA   87 (114)
T ss_dssp             CEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             CeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCC
Confidence            45789999999999987543 3345789863  21110             0111  22233445778999999999999


Q ss_pred             eEEEEEEcCC
Q psy7040         496 IYTLAVKNSW  505 (716)
Q Consensus       496 ~y~~~a~n~~  505 (716)
                      .|-|.+....
T Consensus        88 ~YyCa~~~~~   97 (114)
T d2ak4d1          88 VYFCALSGFY   97 (114)
T ss_dssp             EEEEEEECSB
T ss_pred             CceEeCCCCC
Confidence            9999876544

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.44  E-value=0.041  Score=41.41  Aligned_cols=68  Identities=16%  Similarity=0.251  Sum_probs=47.8

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeC--CeE---e------------ccCCcEEEEeCCCeEEEEECCCCCCCceeE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---I------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~--~~~---~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y  497 (716)
                      .+.+.+|+.+.|.|.........+.|++.  +..   +            ................|.|.++.++|++.|
T Consensus         9 ~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (115)
T d1i9ea_           9 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVY   88 (115)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEE
T ss_pred             eEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccccccee
Confidence            57899999999999987766677888862  211   0            011122222334556899999999999999


Q ss_pred             EEEEE
Q psy7040         498 TLAVK  502 (716)
Q Consensus       498 ~~~a~  502 (716)
                      -|.+.
T Consensus        89 yCa~~   93 (115)
T d1i9ea_          89 FCAVS   93 (115)
T ss_dssp             EEEEE
T ss_pred             ccccc
Confidence            99765

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=94.39  E-value=0.12  Score=38.29  Aligned_cols=70  Identities=11%  Similarity=0.119  Sum_probs=49.9

Q ss_pred             ccEEEecCCeEEEEEEEecc----CCCeEEEEeCC--eEe------------ccCCcEEEEeCCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIGE----PIPTKEWLCND--ITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~----p~~~~~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+.+|+.+.|.|.....    ....+.|++..  ...            ....++.....+....|.|.+++++|++
T Consensus         9 ~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA   88 (111)
T d2gsia1           9 ASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAA   88 (111)
T ss_dssp             SEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCc
Confidence            45789999999999987532    12247887632  111            1234666666677889999999999999


Q ss_pred             eEEEEEEc
Q psy7040         496 IYTLAVKN  503 (716)
Q Consensus       496 ~y~~~a~n  503 (716)
                      .|-|.+..
T Consensus        89 ~YyCa~~~   96 (111)
T d2gsia1          89 TYYCSHIR   96 (111)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEECC
Confidence            99997643

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.31  E-value=0.049  Score=41.05  Aligned_cols=69  Identities=12%  Similarity=0.092  Sum_probs=49.7

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--E---e---------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+..|+.+.|.|.....-...+.|++...  .   +         ....++.....+....|.|.+++++|++.|-|
T Consensus         9 ~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyC   88 (119)
T d1f3rb2           9 SLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFC   88 (119)
T ss_dssp             SEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEe
Confidence            35678899999999987655455688986421  1   0         12334555555667899999999999999999


Q ss_pred             EEE
Q psy7040         500 AVK  502 (716)
Q Consensus       500 ~a~  502 (716)
                      .+.
T Consensus        89 a~~   91 (119)
T d1f3rb2          89 YQY   91 (119)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            664

>d1f6fb1 b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.29  E-value=0.13  Score=36.88  Aligned_cols=80  Identities=16%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEee-ecCCCCeEEe--cCCCCCCeEEEEEEEEe
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ-TEGDTPKGKV--LDLIEGNQYEFRVLAVN  403 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~~~i--~~l~~~~~Y~~~v~a~n  403 (716)
                      .|.++.+.......++.+|++-... + .-+.|.+.++......+..... ......+..+  ..+.....|.|.|.|.|
T Consensus         2 kP~~~sC~s~~~~~~~C~W~~G~~t-~-L~T~Y~l~~~~~~~~~~~eCp~y~~~~~~~C~f~~~~~~~~~~y~i~V~a~N   79 (96)
T d1f6fb1           2 KPEIHKCRSPDKETFTCWWNPGTDG-G-LPTNYSLTYSKEGEKTTYECPDYKTSGPNSCFFSKQYTSIWKIYIITVNATN   79 (96)
T ss_dssp             CCEEEEEEBSSSSCEEEEEECCCCT-T-SCCEEEEEEEETTEEEEEECSCSSTTCTTEEEECTTTCCSSCEEEEEEEEEE
T ss_pred             CCeEeEEEeCCCCEEEEEeeCCCcC-C-cCceEEEEEEecCCCccccCCcccCCCceeEEECCccCccceEEEEEEEEEc
Confidence            4677777777778899999983222 2 2368999998665455544432 2233455555  44667789999999999


Q ss_pred             CCCCC
Q psy7040         404 KGGPG  408 (716)
Q Consensus       404 ~~g~~  408 (716)
                      ..|..
T Consensus        80 ~LG~~   84 (96)
T d1f6fb1          80 QMGSS   84 (96)
T ss_dssp             TTEEE
T ss_pred             CCCCc
Confidence            98854

>d2qfra1 b.1.12.1 (A:9-120) Purple acid phosphatase, N-terminal domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=94.22  E-value=0.15  Score=37.64  Aligned_cols=18  Identities=33%  Similarity=0.412  Sum_probs=17.0

Q ss_pred             eEEEEcCCCCCCeEEEEE
Q psy7040         570 TKITIRPLQRSDTAQYTV  587 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v  587 (716)
                      ...+|.+|+|++.|.|+|
T Consensus        80 h~v~Lt~L~P~T~Y~YrV   97 (112)
T d2qfra1          80 HHTTIRKLKYNTKYYYEV   97 (112)
T ss_dssp             EEEEECSCCTTCEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEE
Confidence            678999999999999998

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.15  E-value=0.086  Score=39.27  Aligned_cols=70  Identities=13%  Similarity=0.117  Sum_probs=48.5

Q ss_pred             ccEEEecCCeEEEEEEEeccC-CCeEEEEeCC--eEec------------cCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP-IPTKEWLCND--ITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p-~~~~~W~~~~--~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      ..+.+.+|+.++|.|...+.. ...+.|++..  ..+.            ...+..+..+.....|.|.++.+.|++.|-
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   85 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYY   85 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEe
Confidence            357789999999999986544 3458998742  1111            112233344456678999999999999999


Q ss_pred             EEEEc
Q psy7040         499 LAVKN  503 (716)
Q Consensus       499 ~~a~n  503 (716)
                      |.+..
T Consensus        86 Ca~~~   90 (112)
T d1kgcd1          86 CILPL   90 (112)
T ss_dssp             EECCC
T ss_pred             eeEec
Confidence            97653

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.15  E-value=0.11  Score=38.41  Aligned_cols=69  Identities=14%  Similarity=0.186  Sum_probs=50.2

Q ss_pred             cEEEecCCeEEEEEEEeccCC---CeEEEEeC--CeEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPI---PTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~---~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y  497 (716)
                      .+.+.+|+.+.|.|.+.....   ..+.|++.  +...            ....++....++....|.|.+++++|.+.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            467899999999999864332   23778752  1111            123556666677888999999999999999


Q ss_pred             EEEEEc
Q psy7040         498 TLAVKN  503 (716)
Q Consensus       498 ~~~a~n  503 (716)
                      -|.+..
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            998754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.11  E-value=0.14  Score=37.99  Aligned_cols=70  Identities=19%  Similarity=0.177  Sum_probs=49.2

Q ss_pred             ccEEEecCCeEEEEEEEeccC-----CCeEEEEeCC--eE------------eccCCcEEEEeCCCeEEEEECCCCCCCc
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP-----IPTKEWLCND--IT------------IISKDRFKIVNDDKSTKLKVFDSKRGDS  494 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p-----~~~~~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~l~~~~~  494 (716)
                      ..+.+.+|+.+.+.|......     ...+.|++..  ..            .....++.....++...|.|.+++++|+
T Consensus         9 ~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDs   88 (112)
T d1ncwl1           9 KTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDL   88 (112)
T ss_dssp             SEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcC
Confidence            457899999999999865432     2347787531  11            1123455555666778999999999999


Q ss_pred             eeEEEEEEc
Q psy7040         495 GIYTLAVKN  503 (716)
Q Consensus       495 ~~y~~~a~n  503 (716)
                      +.|-|...+
T Consensus        89 AvYYC~~~~   97 (112)
T d1ncwl1          89 GVYYCWQGT   97 (112)
T ss_dssp             EEEEEEECS
T ss_pred             EeEEEEcCC
Confidence            999996543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.07  E-value=0.13  Score=38.36  Aligned_cols=69  Identities=17%  Similarity=0.338  Sum_probs=47.8

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eE------------eccCCcEEE--EeCCCeEEEEECCCCCCCceeE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--IT------------IISKDRFKI--VNDDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~------------~~~~~~~~~--~~~~~~~~l~i~~l~~~~~~~y  497 (716)
                      ..+.+.+|+.+.|.|..... ...+.|++..  ..            .....++.+  ........|.|.++.++|++.|
T Consensus         8 ~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (115)
T d1ogad1           8 QFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLY   86 (115)
T ss_dssp             SEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeE
Confidence            35789999999999987653 3468888632  10            011122222  3345678999999999999999


Q ss_pred             EEEEEc
Q psy7040         498 TLAVKN  503 (716)
Q Consensus       498 ~~~a~n  503 (716)
                      -|.+..
T Consensus        87 yCa~~~   92 (115)
T d1ogad1          87 LCAGAG   92 (115)
T ss_dssp             EEEEEC
T ss_pred             cccccC
Confidence            997754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.11  Score=38.40  Aligned_cols=71  Identities=14%  Similarity=0.172  Sum_probs=42.5

Q ss_pred             cEEEecCCeEEEEEEEeccCC---CeE--EEEeCCeEec--------------cCCcEEEEeCCCeEEEEECCCCCCCce
Q psy7040         435 DIKVRAGSNFEFDINVIGEPI---PTK--EWLCNDITII--------------SKDRFKIVNDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~---~~~--~W~~~~~~~~--------------~~~~~~~~~~~~~~~l~i~~l~~~~~~  495 (716)
                      .+.+..|+.+.|.|.......   ..+  .|.++.....              .....+........+|.|.++++.|.|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            356777999999998753322   223  3444332110              001111222234568999999999999


Q ss_pred             eEEEEEEcCC
Q psy7040         496 IYTLAVKNSW  505 (716)
Q Consensus       496 ~y~~~a~n~~  505 (716)
                      .|.|......
T Consensus        83 ~Y~C~V~~~~   92 (110)
T d1ncna_          83 LYQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEecC
Confidence            9999986443

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=94.06  E-value=0.096  Score=38.86  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=49.2

Q ss_pred             ccEEEecCCeEEEEEEEecc----CCCeEEEEeC--CeEe------------ccCCcEEEEeCCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIGE----PIPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~----p~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+.+|+.+.+.|.....    ....+.|++.  +...            ....++.....+....|.|.+++++|++
T Consensus         9 ~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   88 (111)
T d1j05a_           9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVA   88 (111)
T ss_dssp             SEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCc
Confidence            34678899999999987421    2223888863  2111            1234555666677889999999999999


Q ss_pred             eEEEEEEc
Q psy7040         496 IYTLAVKN  503 (716)
Q Consensus       496 ~y~~~a~n  503 (716)
                      .|-|.+.+
T Consensus        89 ~YyCa~~~   96 (111)
T d1j05a_          89 TYYCQQTN   96 (111)
T ss_dssp             EEEEEECS
T ss_pred             cEEEeecC
Confidence            99997653

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.04  E-value=0.075  Score=39.22  Aligned_cols=69  Identities=16%  Similarity=0.190  Sum_probs=50.7

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeC--CeEe------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEE
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  500 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~  500 (716)
                      .+.+.+|+.+.+.|.........+.|++.  +...            ...+++.....+....|.|.+++++|++.|-|.
T Consensus         8 s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA   87 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL   87 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred             eeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEE
Confidence            47789999999999876555556788863  2111            113356666667788999999999999999997


Q ss_pred             EEc
Q psy7040         501 VKN  503 (716)
Q Consensus       501 a~n  503 (716)
                      +..
T Consensus        88 ~~~   90 (108)
T d1nfde1          88 SSY   90 (108)
T ss_dssp             EEE
T ss_pred             eec
Confidence            753

>d1xzwa1 b.1.12.1 (A:1-119) Purple acid phosphatase, N-terminal domain {Sweet potato (Ipomoea batatas) [TaxId: 4120]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

Probab=94.03  E-value=0.16  Score=38.09  Aligned_cols=18  Identities=22%  Similarity=0.329  Sum_probs=16.9

Q ss_pred             eEEEEcCCCCCCeEEEEE
Q psy7040         570 TKITIRPLQRSDTAQYTV  587 (716)
Q Consensus       570 ~~~~i~~L~~~~~y~~~v  587 (716)
                      ...+|.+|+|++.|.|+|
T Consensus        87 H~v~LtgL~P~T~Y~YrV  104 (119)
T d1xzwa1          87 HHCTIKDLEYDTKYYYRL  104 (119)
T ss_dssp             EEEEECCCCTTCEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEE
Confidence            678999999999999998

>d2qfra1 b.1.12.1 (A:9-120) Purple acid phosphatase, N-terminal domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=94.01  E-value=0.048  Score=40.50  Aligned_cols=17  Identities=18%  Similarity=0.364  Sum_probs=16.2

Q ss_pred             eEEecCCCCCcEEEEEE
Q psy7040         111 EMDVTGLTPGHEYKFRV  127 (716)
Q Consensus       111 ~~~i~~L~~~~~y~~~v  127 (716)
                      ...|.||+|++.|.|+|
T Consensus        81 ~v~Lt~L~P~T~Y~YrV   97 (112)
T d2qfra1          81 HTTIRKLKYNTKYYYEV   97 (112)
T ss_dssp             EEEECSCCTTCEEEEEE
T ss_pred             EEEECCCCCCCEEEEEE
Confidence            68999999999999998

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.037  Score=39.51  Aligned_cols=58  Identities=10%  Similarity=0.209  Sum_probs=37.5

Q ss_pred             eEEEEeCCeEeee--cccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCeEEEEe
Q psy7040         645 ESQYLMNDKRVTI--DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIWMS  714 (716)
Q Consensus       645 ~~~W~~~~~~~~~--~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~p~~~~~~  714 (716)
                      .+.++|+|.....  ........|.|.++...++|+|+|..... .           ...+.|.-|+.|+|+
T Consensus        33 ~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~~-~-----------~~wS~~SdpLeL~Vt   92 (93)
T d1olla2          33 MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN-N-----------HAWSFPSEPVKLLVT   92 (93)
T ss_dssp             EEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEE-T-----------TEECCCCCCEEEEEE
T ss_pred             EEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeECC-C-----------CCcCCCCCCEEEEee
Confidence            6777887643221  12235578999999999999999974321 0           012445556888775

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=93.91  E-value=0.14  Score=38.00  Aligned_cols=69  Identities=19%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             ccEEEecCCeEEEEEEEeccCC-----CeEEEEeCC--eE------------eccCCcEEEEeCCCeEEEEECCCCCCCc
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPI-----PTKEWLCND--IT------------IISKDRFKIVNDDKSTKLKVFDSKRGDS  494 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~-----~~~~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~l~~~~~  494 (716)
                      ..+.+.+|+.+.+.|.......     ..+.|++..  ..            .....++.....+....|.|.+++++|+
T Consensus        10 ~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   89 (113)
T d1n4xl_          10 LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL   89 (113)
T ss_dssp             SEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccC
Confidence            3577999999999999754322     357888532  11            1123455666667788999999999999


Q ss_pred             eeEEEEEE
Q psy7040         495 GIYTLAVK  502 (716)
Q Consensus       495 ~~y~~~a~  502 (716)
                      +.|-|...
T Consensus        90 avYyCa~~   97 (113)
T d1n4xl_          90 GIYYCFQG   97 (113)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            99999654

>d2hfta1 b.1.2.1 (A:1-106) Extracellular region of human tissue factor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.33  Score=35.18  Aligned_cols=76  Identities=16%  Similarity=0.136  Sum_probs=50.8

Q ss_pred             CCCceEEE-EeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEE-EecccCCCeEEecC-C--CCCcEEEEEEEEEec
Q psy7040          58 EGPLEVSN-IHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI-PVGKTREPEMDVTG-L--TPGHEYKFRVKALNK  132 (716)
Q Consensus        58 ~~~l~~~~-~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~-~~~~~~~~~~~i~~-L--~~~~~y~~~v~a~~~  132 (716)
                      +.|.+|.- ...-.-.|+|+++.    . -..|.|+|+..++ .|. .|.....+.+.|.+ +  .....|..||+|..+
T Consensus         7 ~~p~NV~~~S~Nf~~iL~W~p~~----~-~~~YtVqy~~~~~-~W~~~C~nit~~~CDlt~~~~~d~~~~Y~aRVrA~~~   80 (106)
T d2hfta1           7 VAAYNLTWKSTNFKTILEWEPKP----V-NQVYTVQISTKSG-DWKSKCFYTTDTECDLTDEIVKDVKQTYLARVFSYPA   80 (106)
T ss_dssp             CCCEEEEEEEETTEEEEEEECCC----S-SEEEEEEEEETTS-CCEEEEEEESCSEEECHHHHGGGTTSCEEEEEEEEEC
T ss_pred             ccceEEEEEEEcCeEEEEECCCC----C-CEEEEEEEEEcCC-chhhcccCcCccccccccccccCCCCCEEEEEEEEcC
Confidence            34444542 23447889999753    1 2459999987654 464 45566668888876 3  356789999999987


Q ss_pred             CccCCCc
Q psy7040         133 EGESEPL  139 (716)
Q Consensus       133 ~g~~~~s  139 (716)
                      .+.+..+
T Consensus        81 ~~~S~~~   87 (106)
T d2hfta1          81 GNVESTG   87 (106)
T ss_dssp             SSCCCC-
T ss_pred             CCccccc
Confidence            7766544

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=93.82  E-value=0.15  Score=38.22  Aligned_cols=72  Identities=21%  Similarity=0.200  Sum_probs=49.2

Q ss_pred             ccEEEecCCeEEEEEEEec-cCCCeEEEEeC--CeEec---------------cCCcEEEEeC--CCeEEEEECCCCCCC
Q psy7040         434 SDIKVRAGSNFEFDINVIG-EPIPTKEWLCN--DITII---------------SKDRFKIVND--DKSTKLKVFDSKRGD  493 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~-~p~~~~~W~~~--~~~~~---------------~~~~~~~~~~--~~~~~l~i~~l~~~~  493 (716)
                      ..+.+.+|+.+.|.|.... .....+.|++.  +....               ...++.+...  .....|+|.+++++|
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D   87 (116)
T d1tvda_           8 PDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTED   87 (116)
T ss_dssp             CCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             CCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccc
Confidence            3578999999999998753 34567889862  11110               1234544432  344689999999999


Q ss_pred             ceeEEEEEEcCC
Q psy7040         494 SGIYTLAVKNSW  505 (716)
Q Consensus       494 ~~~y~~~a~n~~  505 (716)
                      +|.|-|.+....
T Consensus        88 sg~YyCa~~~~~   99 (116)
T d1tvda_          88 SATYYCAFTLPP   99 (116)
T ss_dssp             CEEEEEEEECTT
T ss_pred             cccceeeEecCC
Confidence            999999776543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=93.72  E-value=0.15  Score=37.77  Aligned_cols=68  Identities=15%  Similarity=0.195  Sum_probs=48.5

Q ss_pred             ccEEEecCCeEEEEEEEecc-----CCCeEEEEeCC--eE------------eccCCcEEEEeCCCeEEEEECCCCCCCc
Q psy7040         434 SDIKVRAGSNFEFDINVIGE-----PIPTKEWLCND--IT------------IISKDRFKIVNDDKSTKLKVFDSKRGDS  494 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~-----p~~~~~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~l~~~~~  494 (716)
                      ..+.+.+|+.++|.|...+.     ....+.|++..  ..            .....++.....+....|.|.+++++|+
T Consensus         9 ~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~Ds   88 (112)
T d1mjul1           9 PSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDV   88 (112)
T ss_dssp             SEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCC
Confidence            35778999999999987543     23357787532  11            0123356666677788999999999999


Q ss_pred             eeEEEEE
Q psy7040         495 GIYTLAV  501 (716)
Q Consensus       495 ~~y~~~a  501 (716)
                      +.|-|..
T Consensus        89 AvYyCa~   95 (112)
T d1mjul1          89 GVYYCLQ   95 (112)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEe
Confidence            9999944

>d1f6fb1 b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.72  E-value=0.098  Score=37.54  Aligned_cols=76  Identities=20%  Similarity=0.146  Sum_probs=52.4

Q ss_pred             eEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc-CcccceEEE--cCCCCCCeEEEEEEEEcCCCC
Q psy7040         230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-EGPVTGLEV--EGLIPNHKYKFRVRAVNKQGK  306 (716)
Q Consensus       230 ~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~~i--~~L~p~~~y~~~v~a~n~~g~  306 (716)
                      +......-..++-+|++ ..... .-+.|.+.+.......|..+... .....++.+  ..+.....|.+.|.|.|..|.
T Consensus         6 ~sC~s~~~~~~~C~W~~-G~~t~-L~T~Y~l~~~~~~~~~~~eCp~y~~~~~~~C~f~~~~~~~~~~y~i~V~a~N~LG~   83 (96)
T d1f6fb1           6 HKCRSPDKETFTCWWNP-GTDGG-LPTNYSLTYSKEGEKTTYECPDYKTSGPNSCFFSKQYTSIWKIYIITVNATNQMGS   83 (96)
T ss_dssp             EEEEBSSSSCEEEEEEC-CCCTT-SCCEEEEEEEETTEEEEEECSCSSTTCTTEEEECTTTCCSSCEEEEEEEEEETTEE
T ss_pred             eEEEeCCCCEEEEEeeC-CCcCC-cCceEEEEEEecCCCccccCCcccCCCceeEEECCccCccceEEEEEEEEEcCCCC
Confidence            55555566789999995 32222 24789999887666667776543 233345555  456788999999999999986


Q ss_pred             C
Q psy7040         307 S  307 (716)
Q Consensus       307 ~  307 (716)
                      .
T Consensus        84 ~   84 (96)
T d1f6fb1          84 S   84 (96)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=93.69  E-value=0.27  Score=36.42  Aligned_cols=71  Identities=20%  Similarity=0.365  Sum_probs=46.7

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEec----------cCCcE--EEE-eCCCeEEEEECCCCCCCceeEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITII----------SKDRF--KIV-NDDKSTKLKVFDSKRGDSGIYT  498 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~~----------~~~~~--~~~-~~~~~~~l~i~~l~~~~~~~y~  498 (716)
                      ..+.+.+|+.+.|.|..... ...+.|++..  ....          .....  ... .......|.|.++.++|++.|-
T Consensus         9 ~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (113)
T d1h5ba_           9 SALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYF   87 (113)
T ss_dssp             SEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEE
T ss_pred             CEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEE
Confidence            45789999999999998653 4568898732  1100          00000  111 1224567999999999999999


Q ss_pred             EEEEcCC
Q psy7040         499 LAVKNSW  505 (716)
Q Consensus       499 ~~a~n~~  505 (716)
                      |.+....
T Consensus        88 Ca~~~~~   94 (113)
T d1h5ba_          88 CAAEASS   94 (113)
T ss_dssp             EEEECSS
T ss_pred             EEecCCC
Confidence            9876543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=93.68  E-value=0.13  Score=38.55  Aligned_cols=69  Identities=22%  Similarity=0.302  Sum_probs=47.4

Q ss_pred             ccEEEecCCeEEEEEEEec-cCCCeEEEEeCC-----eEe------c-----------cCCcEEEEe--CCCeEEEEECC
Q psy7040         434 SDIKVRAGSNFEFDINVIG-EPIPTKEWLCND-----ITI------I-----------SKDRFKIVN--DDKSTKLKVFD  488 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~-----~~~------~-----------~~~~~~~~~--~~~~~~l~i~~  488 (716)
                      ..+.+.+|+.+.|.|.+.. .....+.|++..     ..+      .           ...++....  ......|.|.+
T Consensus         6 ~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   85 (115)
T d2atpb1           6 SSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMN   85 (115)
T ss_dssp             SEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECS
T ss_pred             CcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecc
Confidence            4578999999999999876 345568898642     111      0           111222222  23456899999


Q ss_pred             CCCCCceeEEEEEE
Q psy7040         489 SKRGDSGIYTLAVK  502 (716)
Q Consensus       489 l~~~~~~~y~~~a~  502 (716)
                      +.++|+|.|-|.+.
T Consensus        86 ~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          86 VKPEDSDFYFCATV   99 (115)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCCcEEEEeEc
Confidence            99999999999775

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.47  E-value=0.078  Score=36.46  Aligned_cols=45  Identities=9%  Similarity=0.191  Sum_probs=34.6

Q ss_pred             eccCcee--eEEEEeCCeEeeecccceeeEEEEccCCC-CCcEEEEEEEEc
Q psy7040         638 SLMPISL--ESQYLMNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATN  685 (716)
Q Consensus       638 ~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~i~~l~~-~~~y~y~~~a~n  685 (716)
                      |.|+..+  .+.|.+++..+...   ....|.+.+... .++|-|.|...+
T Consensus        19 LTCP~~~~~~I~Wkkn~~~i~g~---~~~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          19 LTCPLDSDENLKWEKNGQELPQK---HDKHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             EECSSCCCTTCEEEETTEEECSC---CCSEEEEESCCTTTSCEEEEEECSS
T ss_pred             EECCCCCCCceEEeeccccCCCC---CCcEEEEccccccccCcceEEecCC
Confidence            7788775  99999999887654   234788888765 799999996433

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=93.45  E-value=0.21  Score=35.77  Aligned_cols=66  Identities=17%  Similarity=0.127  Sum_probs=37.8

Q ss_pred             ecCCeEEEEEEEecc--CCCeEEEEeCCeEeccCCcE-EEE-e-CCC---eEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040         439 RAGSNFEFDINVIGE--PIPTKEWLCNDITIISKDRF-KIV-N-DDK---STKLKVFDSKRGDSGIYTLAVKNSWGT  507 (716)
Q Consensus       439 ~~g~~~~~~~~v~~~--p~~~~~W~~~~~~~~~~~~~-~~~-~-~~~---~~~l~i~~l~~~~~~~y~~~a~n~~g~  507 (716)
                      ..++.+.|.|.+.+.  +...+.|.+++..+...... ... . ++.   ...|.+   .+.+...|+|.+......
T Consensus        15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTTSS
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEEEEEEEeCCCC
Confidence            345677899999886  34579999999877532211 111 1 111   112333   233444678887765443

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.45  E-value=0.3  Score=36.22  Aligned_cols=70  Identities=16%  Similarity=0.195  Sum_probs=47.4

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeC--CeEec---------------cCCcEEE-EeCCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITII---------------SKDRFKI-VNDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~--~~~~~---------------~~~~~~~-~~~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+.+|+.+.|.|.... ....+.|++.  +....               ...++.. ........|.|.++.++|++
T Consensus         7 ~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   85 (113)
T d2ntsp1           7 RYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSA   85 (113)
T ss_dssp             SEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCE
T ss_pred             CeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccce
Confidence            3577899999999998654 3456889872  22111               1122222 22345678999999999999


Q ss_pred             eEEEEEEcC
Q psy7040         496 IYTLAVKNS  504 (716)
Q Consensus       496 ~y~~~a~n~  504 (716)
                      .|-|.+...
T Consensus        86 ~YyCA~~~~   94 (113)
T d2ntsp1          86 LYLCASSLA   94 (113)
T ss_dssp             EEEEEEESS
T ss_pred             eeeeeeeCC
Confidence            999987643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.41  E-value=0.26  Score=35.47  Aligned_cols=66  Identities=14%  Similarity=0.012  Sum_probs=37.0

Q ss_pred             ecCCeEEEEEEEeccCC--CeEEEEeCCeEeccCCcEEEEeCCCe--EEEEECCCCCCCceeEEEEEEcC
Q psy7040         439 RAGSNFEFDINVIGEPI--PTKEWLCNDITIISKDRFKIVNDDKS--TKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       439 ~~g~~~~~~~~v~~~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~--~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      ..|..+.|.|.+.+.-+  ..+.|.+++..+...........++.  .......+.+.+...|+|.+.-.
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHD   85 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeC
Confidence            35677899999988733  46899999988754332222222211  11111122334445677776543

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.13  Score=36.45  Aligned_cols=62  Identities=10%  Similarity=0.010  Sum_probs=46.0

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  502 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~  502 (716)
                      -.+..|.+++|.|... .....+.++|++...    ............+.|.++.+.+.|.|+|...
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~----~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          13 PEVISGEKVTFYCRLD-TATSMFLLLKEGRSS----HVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             SEEETTCEEEEEEECS-SSCSEEEEEEESSSC----EEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CcccCCCcEEEEECCC-CCCCEEEEEECCCcc----ceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            3588899999999754 345678888876532    1222334567799999999999999999754

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.32  E-value=0.016  Score=42.97  Aligned_cols=37  Identities=27%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCCC-ceeEEEEEE
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIV  219 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~~~v  219 (716)
                      .+.+|.|.+++.+|+|.|+|.+.+..+. ....+.|.|
T Consensus        69 ~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          69 SNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             ccccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            3679999999999999999999887654 445555543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=93.22  E-value=0.059  Score=39.01  Aligned_cols=41  Identities=5%  Similarity=-0.101  Sum_probs=28.1

Q ss_pred             eEEEEeCCeEeeec-----ccceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040         645 ESQYLMNDKRVTID-----NVDYFTKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       645 ~~~W~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      .+.|+|+|......     .......+.|..+...++|+|+|.-..
T Consensus        35 ~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2          35 MYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             EEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             EEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeec
Confidence            77888987543222     122235678888889999999998554

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.19  E-value=0.12  Score=38.31  Aligned_cols=69  Identities=16%  Similarity=0.163  Sum_probs=48.5

Q ss_pred             cEEEecCCeEEEEEEEeccCC--CeEEEEeCC--eEe------------ccCCcEEEE--eCCCeEEEEECCCCCCCcee
Q psy7040         435 DIKVRAGSNFEFDINVIGEPI--PTKEWLCND--ITI------------ISKDRFKIV--NDDKSTKLKVFDSKRGDSGI  496 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~--~~~~W~~~~--~~~------------~~~~~~~~~--~~~~~~~l~i~~l~~~~~~~  496 (716)
                      .+.+.+|..++|.|...+...  ..+.|++..  ...            ...+++...  ...+...|.|.+++++|++.
T Consensus         9 s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~   88 (111)
T d1cd0a_           9 SVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEAD   88 (111)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             eeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcE
Confidence            578999999999999865432  347888642  110            012344443  34567899999999999999


Q ss_pred             EEEEEEc
Q psy7040         497 YTLAVKN  503 (716)
Q Consensus       497 y~~~a~n  503 (716)
                      |-|.+.+
T Consensus        89 YyCA~~~   95 (111)
T d1cd0a_          89 YYCQSYD   95 (111)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecc
Confidence            9997654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.17  E-value=0.18  Score=36.79  Aligned_cols=68  Identities=12%  Similarity=0.110  Sum_probs=48.6

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--Ee------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--TI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      ..+.+.+|+.+.|.|.... ....+.|++...  ..            .....+.....+....|.|.+++++|++.|-|
T Consensus         8 ~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC   86 (104)
T d1yqvl1           8 AIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYC   86 (104)
T ss_dssp             SEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEE
Confidence            4578999999999998643 344578886421  00            01334555556677899999999999999999


Q ss_pred             EEE
Q psy7040         500 AVK  502 (716)
Q Consensus       500 ~a~  502 (716)
                      .+.
T Consensus        87 a~~   89 (104)
T d1yqvl1          87 QQW   89 (104)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=93.06  E-value=0.25  Score=36.39  Aligned_cols=69  Identities=9%  Similarity=0.072  Sum_probs=47.4

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEec----------------cCCcEEEEeCCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITII----------------SKDRFKIVNDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~~----------------~~~~~~~~~~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+..|+.+.+.|.... ....+.|++..  ....                ...............|.|.++.++|++
T Consensus         9 ~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   87 (110)
T d2aq2a1           9 RNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTS   87 (110)
T ss_dssp             SEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCE
Confidence            3577899999999998754 34578898732  1110                111222333456788999999999999


Q ss_pred             eEEEEEEc
Q psy7040         496 IYTLAVKN  503 (716)
Q Consensus       496 ~y~~~a~n  503 (716)
                      .|-|.+..
T Consensus        88 ~YyCa~~~   95 (110)
T d2aq2a1          88 VYFCASGG   95 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeeCC
Confidence            99997653

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=93.06  E-value=0.34  Score=36.27  Aligned_cols=70  Identities=21%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             ccEEEecCCeEEEEEEEeccC--CCeEEEEeC--CeEec------------cCCcEEEEe--CCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIGEP--IPTKEWLCN--DITII------------SKDRFKIVN--DDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p--~~~~~W~~~--~~~~~------------~~~~~~~~~--~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+..|+.++|.|.+.+..  ...+.|++.  +..+.            ..+++....  ..+...|.|.++.++|.+
T Consensus         9 ~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa   88 (120)
T d1hxma1           9 QTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEG   88 (120)
T ss_dssp             SEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCE
T ss_pred             CCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCc
Confidence            356789999999999997654  345889863  21110            123444443  345689999999999999


Q ss_pred             eEEEEEEc
Q psy7040         496 IYTLAVKN  503 (716)
Q Consensus       496 ~y~~~a~n  503 (716)
                      .|-|....
T Consensus        89 ~YyCA~~~   96 (120)
T d1hxma1          89 SYYCACDT   96 (120)
T ss_dssp             EEEEEEEC
T ss_pred             eeecCccc
Confidence            99997654

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=93.04  E-value=0.24  Score=35.55  Aligned_cols=31  Identities=16%  Similarity=0.142  Sum_probs=23.8

Q ss_pred             ecCCeEEEEEEEeccC--CCeEEEEeCCeEecc
Q psy7040         439 RAGSNFEFDINVIGEP--IPTKEWLCNDITIIS  469 (716)
Q Consensus       439 ~~g~~~~~~~~v~~~p--~~~~~W~~~~~~~~~  469 (716)
                      ..+....|.|.+.+.-  ...+.|.++|..+..
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   49 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTE   49 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccC
Confidence            4566778999998873  346999999988753

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.3  Score=35.82  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=22.6

Q ss_pred             ceeeEEEEccCCCCCcEEEEEEEEcCC
Q psy7040         661 DYFTKITIRPLQRSDTAQYTVTATNSQ  687 (716)
Q Consensus       661 ~~~~~~~i~~l~~~~~y~y~~~a~n~~  687 (716)
                      .....|.|.+|+++|+|.|.|......
T Consensus        67 ~~~~~L~I~~l~~~DsG~Y~C~v~~~~   93 (108)
T d1hkfa_          67 AGFFTVTMTDLREEDSGHYWCRIYRPS   93 (108)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEECTT
T ss_pred             CCEEEEEEhhhCCCCCEEEEEEEecCC
Confidence            444789999999999999999877533

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=92.89  E-value=0.21  Score=37.23  Aligned_cols=71  Identities=15%  Similarity=0.187  Sum_probs=48.5

Q ss_pred             ccEEEecCCeEEEEEEEec-cCCCeEEEEeCC--eEec-------------cCCcEEEEe--CCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIG-EPIPTKEWLCND--ITII-------------SKDRFKIVN--DDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~--~~~~-------------~~~~~~~~~--~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+.+|+.+.|.|.... .....+.|++..  ....             ...++.+..  ......|.|.+++++|++
T Consensus         7 ~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (115)
T d1fo0a_           7 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSA   86 (115)
T ss_dssp             CEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             CEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccc
Confidence            4578999999999998753 334458898632  1100             112333333  345678999999999999


Q ss_pred             eEEEEEEcC
Q psy7040         496 IYTLAVKNS  504 (716)
Q Consensus       496 ~y~~~a~n~  504 (716)
                      .|-|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1fo0a_          87 VYFCAMRGD   95 (115)
T ss_dssp             EEEEEEECC
T ss_pred             cccceeecC
Confidence            999987644

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.096  Score=39.71  Aligned_cols=71  Identities=21%  Similarity=0.361  Sum_probs=46.9

Q ss_pred             ccEEEecCCeEEEEEEEeccCC-------CeEEEEeCCeEec-----------------cCCcEEEEeC--CCeEEEEEC
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPI-------PTKEWLCNDITII-----------------SKDRFKIVND--DKSTKLKVF  487 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~-------~~~~W~~~~~~~~-----------------~~~~~~~~~~--~~~~~l~i~  487 (716)
                      ..+.+.+|..+.+.|.+.....       ..+.|++....-.                 -..++.+..+  ....+|.|.
T Consensus         9 ~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   88 (121)
T d2g5ra1           9 SSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIR   88 (121)
T ss_dssp             SEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred             CEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEEC
Confidence            4578999999999998853221       2467886542211                 0123443332  346789999


Q ss_pred             CCCCCCceeEEEEEEcC
Q psy7040         488 DSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       488 ~l~~~~~~~y~~~a~n~  504 (716)
                      +++++|+|.|.|.+...
T Consensus        89 ~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          89 DARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             CCChHHCEEEEEEEEeC
Confidence            99999999999998643

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.56  E-value=0.068  Score=40.43  Aligned_cols=38  Identities=16%  Similarity=0.214  Sum_probs=26.7

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCCCc--eeEEEEEEe
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENINGKD--SVEVEVIVL  220 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~--~~~~~~~v~  220 (716)
                      .+.+|+|.+++..|+|.|.|.+.+..+..  ...+.|.|.
T Consensus        79 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          79 KDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            45689999999999999999999865543  344555553

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=92.53  E-value=0.2  Score=37.15  Aligned_cols=69  Identities=16%  Similarity=0.182  Sum_probs=48.8

Q ss_pred             ccEEEecCCeEEEEEEEecc------CCCeEEEEeCC--eE------------eccCCcEEEEeCCCeEEEEECCCCCCC
Q psy7040         434 SDIKVRAGSNFEFDINVIGE------PIPTKEWLCND--IT------------IISKDRFKIVNDDKSTKLKVFDSKRGD  493 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~------p~~~~~W~~~~--~~------------~~~~~~~~~~~~~~~~~l~i~~l~~~~  493 (716)
                      ..+.+..|+.+.|.|.....      ....+.|++..  ..            .....++.....+....|.|.+++++|
T Consensus         9 ~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~D   88 (113)
T d1q9ra1           9 SSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAED   88 (113)
T ss_dssp             SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCC
Confidence            45789999999999976532      11237787632  11            112345566666778899999999999


Q ss_pred             ceeEEEEEE
Q psy7040         494 SGIYTLAVK  502 (716)
Q Consensus       494 ~~~y~~~a~  502 (716)
                      ++.|-|.+.
T Consensus        89 sa~YyCA~~   97 (113)
T d1q9ra1          89 LAVYYCKQS   97 (113)
T ss_dssp             CEEEEEEEC
T ss_pred             CeEEEeccc
Confidence            999999764

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.45  E-value=0.16  Score=34.13  Aligned_cols=56  Identities=5%  Similarity=-0.010  Sum_probs=39.9

Q ss_pred             eccCcee-eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040         638 SLMPISL-ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT  699 (716)
Q Consensus       638 ~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~  699 (716)
                      |.|.... .+.|++++..+... .....++.+.....+..|.|+|.+..     ..+..|.|.
T Consensus        27 L~Cn~~~k~i~W~kdg~~i~~~-~~~~ktlnLG~~~~DPRGiY~C~g~~-----~~s~~LQVY   83 (86)
T d1jbja1          27 LTCGLTDKTIKWLKDGSIISPL-NATKNTWNLGNNAKDPRGTYQCQGAK-----ETSNPLQVY   83 (86)
T ss_dssp             EECSSSCSCEEEEETTEECCCS-SCCSSCCEEEETTSCCEEEEEEEESS-----CEEEEEEEE
T ss_pred             EEeCCCCcEEEEecCCceeccc-ccccceeecCCcccCCCcceEcCCCc-----ccCccEEEE
Confidence            7776655 89999999987643 12225688999999999999997443     334445554

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.49  Score=32.66  Aligned_cols=48  Identities=23%  Similarity=0.371  Sum_probs=36.1

Q ss_pred             EEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040         460 WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  510 (716)
Q Consensus       460 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~  510 (716)
                      |.+..........+.+...+   +|.|+.|..+++|+|.+.++|..|..-.
T Consensus        44 fKk~~~~f~~~~~y~i~~nG---tLkIK~L~~~d~GtYkv~vYd~~Gk~vl   91 (101)
T d1hnfa1          44 FRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYKVSIYDTKGKNVL   91 (101)
T ss_dssp             ECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEEEEEEETTSCEEE
T ss_pred             ecccCCCCCCCceEEEccCC---cEEeeeeeecCCCcEEEEEEcCCCcEee
Confidence            33333344455667766655   7999999999999999999999997643

>d1a21a1 b.1.2.1 (A:4-106) Extracellular region of human tissue factor {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.40  E-value=0.89  Score=32.54  Aligned_cols=73  Identities=19%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             CCceEE-EEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEE-ecccCCCeEEecC--CCC-CcEEEEEEEEEecC
Q psy7040          59 GPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIP-VGKTREPEMDVTG--LTP-GHEYKFRVKALNKE  133 (716)
Q Consensus        59 ~~l~~~-~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~-~~~~~~~~~~i~~--L~~-~~~y~~~v~a~~~~  133 (716)
                      +|.+|. ....-...|+|+++..     -..|.|+|+..+ +.|.. |.....+.+.|++  |.+ ...|..||+|....
T Consensus         3 k~~NV~~~S~Nf~~iL~W~p~~~-----~~~YtVqy~~~~-~~W~~~C~nit~~~CDlt~~~~~~~~~~Y~aRVra~~~~   76 (103)
T d1a21a1           3 RAYNLTWKSTNFKTILEWEPKSI-----DHVYTVQISTRL-ENWKSKCFLTAETECDLTDEVVKDVGQTYMARVLSYPAR   76 (103)
T ss_dssp             CCEEEEEEEETTEEEEEEECCCS-----SEEEEEEEECSS-SCCEEEEEEESSSEEECHHHHTTCTTSCBEEEEEEEECC
T ss_pred             CCEEEEEEEEcCceEEEECCCCC-----CeEEEEEEEecC-CCccccccCcCcceecCcccccccCCCCEEEEEEEecCC
Confidence            344444 2233467899997531     245999998664 46754 5555668898875  344 46899999999877


Q ss_pred             ccCC
Q psy7040         134 GESE  137 (716)
Q Consensus       134 g~~~  137 (716)
                      +.+.
T Consensus        77 ~~s~   80 (103)
T d1a21a1          77 NGNT   80 (103)
T ss_dssp             C--C
T ss_pred             Cccc
Confidence            6554

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.39  E-value=0.37  Score=35.93  Aligned_cols=68  Identities=10%  Similarity=0.039  Sum_probs=45.7

Q ss_pred             cEEEecCCeEEEEEEEeccCCC---eEEEEeCC--eEe---------------ccCCcEEEEeCCCeEEEEECCCCCCCc
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIP---TKEWLCND--ITI---------------ISKDRFKIVNDDKSTKLKVFDSKRGDS  494 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~---~~~W~~~~--~~~---------------~~~~~~~~~~~~~~~~l~i~~l~~~~~  494 (716)
                      .+.+..|..+.|.|........   .+.|++..  ...               ................|.|.++.++|+
T Consensus         8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (117)
T d1dqta_           8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDT   87 (117)
T ss_dssp             EEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccC
Confidence            4667889999999998543322   36798732  111               011112334445678999999999999


Q ss_pred             eeEEEEEE
Q psy7040         495 GIYTLAVK  502 (716)
Q Consensus       495 ~~y~~~a~  502 (716)
                      +.|-|.+.
T Consensus        88 a~YyCa~~   95 (117)
T d1dqta_          88 GLYLCKVE   95 (117)
T ss_dssp             EEEEEEEE
T ss_pred             EeEEEEEe
Confidence            99999764

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.24  Score=36.81  Aligned_cols=69  Identities=14%  Similarity=0.305  Sum_probs=46.4

Q ss_pred             cEEEecCCeEEEEEEEecc--CCCeEEEEeCCe--E---ec------------cCCcEEEEe--CCCeEEEEECCCCCCC
Q psy7040         435 DIKVRAGSNFEFDINVIGE--PIPTKEWLCNDI--T---II------------SKDRFKIVN--DDKSTKLKVFDSKRGD  493 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~--p~~~~~W~~~~~--~---~~------------~~~~~~~~~--~~~~~~l~i~~l~~~~  493 (716)
                      .+.+.+|+.+.+.|...+.  ....+.|++...  .   +.            ...++.+..  ..+...|+|.++.++|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            4667889999999987643  344678986421  1   00            012444443  2345679999999999


Q ss_pred             ceeEEEEEEc
Q psy7040         494 SGIYTLAVKN  503 (716)
Q Consensus       494 ~~~y~~~a~n  503 (716)
                      +|.|.|.+..
T Consensus        88 sg~Y~Cav~~   97 (113)
T d1smoa_          88 SGLYQCVIYQ   97 (113)
T ss_dssp             CEEEEEEECC
T ss_pred             CceEEEEEEC
Confidence            9999997643

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=91.64  E-value=0.57  Score=35.15  Aligned_cols=68  Identities=12%  Similarity=0.166  Sum_probs=47.3

Q ss_pred             cEEEecCCeEEEEEEEeccC--CCeEEEEeCC--e-------------Ee-c---cCCcEEEEeC--CCeEEEEECCCCC
Q psy7040         435 DIKVRAGSNFEFDINVIGEP--IPTKEWLCND--I-------------TI-I---SKDRFKIVND--DKSTKLKVFDSKR  491 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p--~~~~~W~~~~--~-------------~~-~---~~~~~~~~~~--~~~~~l~i~~l~~  491 (716)
                      .+...+|..+.|.|.+.+..  ...+.|++..  .             .. .   ...++.+..+  .+...|.|.++++
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~   89 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccc
Confidence            46788899999999998754  3457787531  1             00 0   1234655543  3467799999999


Q ss_pred             CCceeEEEEEE
Q psy7040         492 GDSGIYTLAVK  502 (716)
Q Consensus       492 ~~~~~y~~~a~  502 (716)
                      +|++.|-|-+.
T Consensus        90 ~Dsa~YyCA~~  100 (123)
T d1hxmb1          90 QDIATYYCALW  100 (123)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccCcEEEEeee
Confidence            99999999764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.34  Score=34.81  Aligned_cols=67  Identities=15%  Similarity=-0.002  Sum_probs=37.4

Q ss_pred             ecCCeEEEEEEEeccCC--CeEEEEeCCeEeccCCcEEEEe--CCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         439 RAGSNFEFDINVIGEPI--PTKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       439 ~~g~~~~~~~~v~~~p~--~~~~W~~~~~~~~~~~~~~~~~--~~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      ..|....|.|.+.+.-+  ..+.|.+++..+..........  ++.-.......+.+++...|+|.+.-..
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCC
Confidence            45777889999988633  4689999998875322111111  1111111122223445557777776543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=91.51  E-value=0.63  Score=33.19  Aligned_cols=66  Identities=14%  Similarity=0.010  Sum_probs=34.3

Q ss_pred             cCCeEEEEEEEeccCC--CeEEEEeCCeEeccCCcE---EEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         440 AGSNFEFDINVIGEPI--PTKEWLCNDITIISKDRF---KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~--~~~~W~~~~~~~~~~~~~---~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      .+....|.|.+.+.-+  ..+.|.+++..+......   ....++.-.......+.+.+...|+|.+....
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            3445579999987544  369999999887432111   11111122222222344555566777776543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.72  Score=32.52  Aligned_cols=66  Identities=15%  Similarity=0.202  Sum_probs=38.1

Q ss_pred             cCCeEEEEEEEecc-C-CCeEEEEeCCeEeccC--CcEEEEeC--CCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         440 AGSNFEFDINVIGE-P-IPTKEWLCNDITIISK--DRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       440 ~g~~~~~~~~v~~~-p-~~~~~W~~~~~~~~~~--~~~~~~~~--~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      .+..+.|.|.+.+. | ...+.|.+++..+...  ........  +.-.......+.+.+...|+|.+....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            45667899999884 4 3479999999887432  11122222  112122222334445567888887653

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=91.46  E-value=0.71  Score=33.09  Aligned_cols=31  Identities=13%  Similarity=0.091  Sum_probs=23.5

Q ss_pred             ecCCeEEEEEEEeccC--CCeEEEEeCCeEecc
Q psy7040         439 RAGSNFEFDINVIGEP--IPTKEWLCNDITIIS  469 (716)
Q Consensus       439 ~~g~~~~~~~~v~~~p--~~~~~W~~~~~~~~~  469 (716)
                      ..+....|.|.+.+.-  ...+.|.++|..+..
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~   49 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTE   49 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCC
Confidence            3466678999998773  347999999987753

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=91.34  E-value=0.22  Score=35.68  Aligned_cols=44  Identities=11%  Similarity=0.115  Sum_probs=28.9

Q ss_pred             eEEEEeCCeEeeec---------ccceeeEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040         645 ESQYLMNDKRVTID---------NVDYFTKITIRPLQRSDTAQYTVTATNSQG  688 (716)
Q Consensus       645 ~~~W~~~~~~~~~~---------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G  688 (716)
                      .+.|+++|.++..+         ..+.-..+....+..++...|+|.+.-..-
T Consensus        36 ~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          36 EVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             EEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTC
T ss_pred             EEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCC
Confidence            89999999887554         111123333445667777789999887543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=91.34  E-value=0.19  Score=37.08  Aligned_cols=70  Identities=16%  Similarity=0.193  Sum_probs=48.3

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEe------------ccCCcEEEEe--CCCeEEEEECCCCCCCceeE
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI------------ISKDRFKIVN--DDKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~------------~~~~~~~~~~--~~~~~~l~i~~l~~~~~~~y  497 (716)
                      ..+.+.+|+.+.|.|.........+.|++..  ..+            ....++....  .+....|.|.++.++|++.|
T Consensus         8 ~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~Y   87 (110)
T d1ac6a_           8 GQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVY   87 (110)
T ss_dssp             SEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEE
T ss_pred             CeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCccc
Confidence            3578999999999998876555678898742  110            0122233322  23467899999999999999


Q ss_pred             EEEEEc
Q psy7040         498 TLAVKN  503 (716)
Q Consensus       498 ~~~a~n  503 (716)
                      -|.+..
T Consensus        88 yCA~~~   93 (110)
T d1ac6a_          88 YCALSG   93 (110)
T ss_dssp             EEEEEE
T ss_pred             ceeecC
Confidence            997754

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=1.2  Score=29.32  Aligned_cols=58  Identities=16%  Similarity=0.232  Sum_probs=42.0

Q ss_pred             ecCCeEEEEEEEeccCCC--eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040         439 RAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  503 (716)
Q Consensus       439 ~~g~~~~~~~~v~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n  503 (716)
                      ..|..+.|+|.+......  .-.|.|++..+..+..     .+....+.|..  .+++|.|.|.-.+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~-----~~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-----CCSEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC-----CCCceEEEEec--CCCCceEEEEEcC
Confidence            457778899999765443  5789999999875422     23455777875  7789999998654

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.12  Score=34.47  Aligned_cols=47  Identities=6%  Similarity=0.072  Sum_probs=35.6

Q ss_pred             eccCcee-eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040         638 SLMPISL-ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       638 ~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      |.|.... .+.|+++|..+..- .....++.+.....+..|.|+|.+.+
T Consensus        22 L~Cn~~~k~i~W~kdg~~i~~~-~~~~ktlnLG~~~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          22 LTCDAEAKNITWFKDGKMIGFL-TEDKKKWNLGSNAKDPRGMYQCKGSQ   69 (81)
T ss_dssp             EEECSCSSEEEEEETTEEEEEE-ESSCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             EEeCCCCcEEEEecCCeEeecc-cCCcceeecCCcccCCCcceEcCCCC
Confidence            6776555 89999999976642 12336788999999999999997543

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=91.26  E-value=0.32  Score=34.91  Aligned_cols=32  Identities=22%  Similarity=0.240  Sum_probs=24.4

Q ss_pred             EecCCeEEEEEEEecc--CCCeEEEEeCCeEecc
Q psy7040         438 VRAGSNFEFDINVIGE--PIPTKEWLCNDITIIS  469 (716)
Q Consensus       438 ~~~g~~~~~~~~v~~~--p~~~~~W~~~~~~~~~  469 (716)
                      +..+....|.|.+.+.  +...+.|.++|..+..
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~   47 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVAD   47 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCS
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccC
Confidence            3456777899999886  3457999999987753

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=91.12  E-value=0.39  Score=34.17  Aligned_cols=68  Identities=4%  Similarity=-0.134  Sum_probs=44.9

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEE-EEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  504 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~  504 (716)
                      -.+..|.+++|.|.-. .....+.+++++.......... .....+...+.|.++.+.+.|+|+|.-...
T Consensus        11 ~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          11 PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            4578999999999753 3455677888764321111111 111223467999999999999999987654

>d2c4fu1 b.1.2.1 (U:91-210) Extracellular region of human tissue factor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.26  Score=36.56  Aligned_cols=64  Identities=9%  Similarity=0.111  Sum_probs=45.3

Q ss_pred             ceEEEEeCCeEEEEecCCCC---CCCC---------ccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEE
Q psy7040          61 LEVSNIHKDGCTLKWNKPKD---DGGE---------PLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVK  128 (716)
Q Consensus        61 l~~~~~~~~s~~l~W~~p~~---~~~~---------~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~  128 (716)
                      +.+......+|.|.-.+|..   .++.         +-..|.|.|+..++..      .....+.|.+|.|++.|-++|+
T Consensus        23 v~~~~~~~~sl~V~i~~P~t~~~~~~~~~~~~d~~~~~l~Y~V~~w~~~s~~------~~~~~~~l~~L~p~t~YCv~Vq   96 (116)
T d2c4fu1          23 IQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFGKDLIYTLYYWSGKKTA------KTNTNEFLIDVDKGENYCFSVQ   96 (116)
T ss_dssp             EEEEEEETTEEEEEECCCEEEEESSSCEEEHHHHHGGGCEEEEEECCCCEEE------EESSSEEEEECCTTCCCEEEEE
T ss_pred             EEEEecCCCEEEEEEeCCCCcccCCCceeehhhhccCCcEEEEEEEECCceE------EEeeeEEEeCCCCCCcEEEEEE
Confidence            44555666799999988742   1222         1357999998655421      1236789999999999999999


Q ss_pred             EE
Q psy7040         129 AL  130 (716)
Q Consensus       129 a~  130 (716)
                      |.
T Consensus        97 a~   98 (116)
T d2c4fu1          97 AV   98 (116)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>d2c4fu1 b.1.2.1 (U:91-210) Extracellular region of human tissue factor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=0.32  Score=36.11  Aligned_cols=66  Identities=15%  Similarity=0.064  Sum_probs=46.9

Q ss_pred             CcEEEeeeCCeEEEEecCCCC---CCCcc---------ceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEE
Q psy7040         330 TPEIKDFDTDFVELAWTPPEQ---NGGSP---------IVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF  397 (716)
Q Consensus       330 ~~~~~~~~~~~i~l~W~~p~~---~~~~~---------i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~  397 (716)
                      .+.+....+.+|.|.-.+|..   .++..         -..|.|.+...++..        .....+.|.+|.|++.|-|
T Consensus        22 ~v~~~~~~~~sl~V~i~~P~t~~~~~~~~~~~~d~~~~~l~Y~V~~w~~~s~~--------~~~~~~~l~~L~p~t~YCv   93 (116)
T d2c4fu1          22 TIQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFGKDLIYTLYYWSGKKTA--------KTNTNEFLIDVDKGENYCF   93 (116)
T ss_dssp             CEEEEEEETTEEEEEECCCEEEEESSSCEEEHHHHHGGGCEEEEEECCCCEEE--------EESSSEEEEECCTTCCCEE
T ss_pred             eEEEEecCCCEEEEEEeCCCCcccCCCceeehhhhccCCcEEEEEEEECCceE--------EEeeeEEEeCCCCCCcEEE
Confidence            577666677899999988742   12211         257999998665221        1345688999999999999


Q ss_pred             EEEEEe
Q psy7040         398 RVLAVN  403 (716)
Q Consensus       398 ~v~a~n  403 (716)
                      +|+|.-
T Consensus        94 ~Vqa~i   99 (116)
T d2c4fu1          94 SVQAVI   99 (116)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999983

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=91.05  E-value=0.43  Score=35.37  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=23.3

Q ss_pred             ceeeEEEEccCCCCCcEEEEEEEEcCC
Q psy7040         661 DYFTKITIRPLQRSDTAQYTVTATNSQ  687 (716)
Q Consensus       661 ~~~~~~~i~~l~~~~~y~y~~~a~n~~  687 (716)
                      ....+|+|.+|.++|+|.|.|.+.+..
T Consensus        69 ~~~~sL~i~~~~~~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          69 TKQSSLHITASQLSDSASYICVVSDRG   95 (114)
T ss_dssp             SSEEEEEECSCCGGGCSEEEEEEECSC
T ss_pred             ccccccEEcccChhhCcccceeeecCC
Confidence            344789999999999999999998853

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.66  Score=33.08  Aligned_cols=68  Identities=9%  Similarity=-0.095  Sum_probs=42.1

Q ss_pred             EEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCc--EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040         437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  505 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~  505 (716)
                      .+..|.+++|.|... .....+..+|++........  ......+....+.|.++...+.|.|+|.-....
T Consensus        14 ~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   83 (98)
T d1ugna2          14 VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSN   83 (98)
T ss_dssp             EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcCC
Confidence            588999999999753 23446777777654321111  111123345689999999999999999876544

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.14  Score=36.47  Aligned_cols=42  Identities=7%  Similarity=0.185  Sum_probs=25.9

Q ss_pred             eEEEEeCCeEeeec----------ccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         645 ESQYLMNDKRVTID----------NVDYFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       645 ~~~W~~~~~~~~~~----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      .+.|++||+++...          ....-.......+.+.+...|+|.+...
T Consensus        33 ~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          33 TMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             EEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             EEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence            89999999987543          1111122333344455566799998885

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=90.49  E-value=0.13  Score=37.10  Aligned_cols=42  Identities=21%  Similarity=0.215  Sum_probs=25.0

Q ss_pred             eEEEEeCCeEeeec---------ccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         645 ESQYLMNDKRVTID---------NVDYFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       645 ~~~W~~~~~~~~~~---------~~~~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      .+.|+++|+++..+         ..+.-.......+.+.+...|+|.+.-.
T Consensus        35 ~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (100)
T d1muja1          35 NITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHW   85 (100)
T ss_dssp             EEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             EEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEEC
Confidence            78999999887644         1111122222233445566789998874

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.15  Score=36.87  Aligned_cols=42  Identities=14%  Similarity=0.184  Sum_probs=26.0

Q ss_pred             eEEEEeCCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         645 ESQYLMNDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       645 ~~~W~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      .+.|.++|+++...        ..++-.......+.+++...|+|.+.-.
T Consensus        37 ~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          37 EVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHV   86 (100)
T ss_dssp             EEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             EEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeC
Confidence            78999999988543        1111122333344456667899998764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.34  E-value=0.28  Score=36.57  Aligned_cols=72  Identities=19%  Similarity=0.151  Sum_probs=46.4

Q ss_pred             ccEEEecCCeEEEEEEEecc------CCCeEEEEeCCeEe---------------ccCCcEEEEeC--CCeEEEEECCCC
Q psy7040         434 SDIKVRAGSNFEFDINVIGE------PIPTKEWLCNDITI---------------ISKDRFKIVND--DKSTKLKVFDSK  490 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~------p~~~~~W~~~~~~~---------------~~~~~~~~~~~--~~~~~l~i~~l~  490 (716)
                      ..+.+.+|..+.|.|.+...      ....+.|++.....               ....++.+...  ....+|.|.+++
T Consensus         8 ~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   87 (118)
T d1qfoa_           8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLK   87 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred             CEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCC
Confidence            35789999999999988521      11234566542110               01233444322  356679999999


Q ss_pred             CCCceeEEEEEEcCC
Q psy7040         491 RGDSGIYTLAVKNSW  505 (716)
Q Consensus       491 ~~~~~~y~~~a~n~~  505 (716)
                      ..|.|.|.|.+....
T Consensus        88 ~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          88 PEDSGTYNFRFEISD  102 (118)
T ss_dssp             GGGCEEEEEEEECC-
T ss_pred             hhHCEEEEEEEEeCC
Confidence            999999999986543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=90.34  E-value=0.6  Score=34.35  Aligned_cols=69  Identities=17%  Similarity=0.207  Sum_probs=45.6

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEe------------c----cCCcEEEEe-CCCeEEEEECCCCCCCc
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI------------I----SKDRFKIVN-DDKSTKLKVFDSKRGDS  494 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~------------~----~~~~~~~~~-~~~~~~l~i~~l~~~~~  494 (716)
                      ..+.+.+|+.+.|.|.... ....+.|++..  ...            .    ...++.... ......|.|.++.++|+
T Consensus         7 ~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (112)
T d1kgce1           7 RYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDS   85 (112)
T ss_dssp             SEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGC
T ss_pred             CeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCC
Confidence            3467899999999998543 34568888631  100            0    122233222 23457899999999999


Q ss_pred             eeEEEEEEc
Q psy7040         495 GIYTLAVKN  503 (716)
Q Consensus       495 ~~y~~~a~n  503 (716)
                      +.|.|.+..
T Consensus        86 a~YyCa~~~   94 (112)
T d1kgce1          86 AVYLCASSL   94 (112)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEeeeC
Confidence            999997753

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=90.18  E-value=0.63  Score=34.16  Aligned_cols=69  Identities=22%  Similarity=0.272  Sum_probs=45.8

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEec----------------cCCcEEEEeC-CCeEEEEECCCCCCCc
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITII----------------SKDRFKIVND-DKSTKLKVFDSKRGDS  494 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~~----------------~~~~~~~~~~-~~~~~l~i~~l~~~~~  494 (716)
                      ..+.+..|+.+.+.|..... ...+.|++..  ....                ...++..... +....|.|.++.++|+
T Consensus         7 ~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Ds   85 (111)
T d2esve1           7 SHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDS   85 (111)
T ss_dssp             SEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCC
Confidence            35779999999999975432 3467888532  1100                1223333332 3446899999999999


Q ss_pred             eeEEEEEEc
Q psy7040         495 GIYTLAVKN  503 (716)
Q Consensus       495 ~~y~~~a~n  503 (716)
                      +.|.|.+..
T Consensus        86 a~YyCa~~~   94 (111)
T d2esve1          86 GVYFCASSQ   94 (111)
T ss_dssp             EEEEEEEES
T ss_pred             ceEEEeeeC
Confidence            999997653

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.99  E-value=0.18  Score=34.11  Aligned_cols=48  Identities=15%  Similarity=0.176  Sum_probs=36.0

Q ss_pred             eccCce--eeEEEEeCCeEeeeccc-----ceeeEEEEccCCC-CCcEEEEEEEEc
Q psy7040         638 SLMPIS--LESQYLMNDKRVTIDNV-----DYFTKITIRPLQR-SDTAQYTVTATN  685 (716)
Q Consensus       638 ~~~~~~--~~~~W~~~~~~~~~~~~-----~~~~~~~i~~l~~-~~~y~y~~~a~n  685 (716)
                      +.|+..  +.+.|.+++..+.....     .+...|.+.+... ++.|.|.|.+..
T Consensus        15 LTCP~~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_          15 LTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EECSSCTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EECCCCCCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCC
Confidence            677755  39999999988876411     2336789999887 789999999743

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=89.93  E-value=0.7  Score=34.17  Aligned_cols=41  Identities=22%  Similarity=0.178  Sum_probs=28.9

Q ss_pred             cceeeEEEEccCCCCCcEEEEEEEEcCCCCc--eeeEEEEEec
Q psy7040         660 VDYFTKITIRPLQRSDTAQYTVTATNSQGKD--QVFIEVVVTD  700 (716)
Q Consensus       660 ~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~--~~s~~l~v~~  700 (716)
                      ......|.|.+|.++|++.|-|.+....+..  -.--+|+|..
T Consensus        67 ~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~~FG~GT~LtV~~  109 (115)
T d1ogad1          67 ARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKP  109 (115)
T ss_dssp             TSSEEEEEESSCCGGGCEEEEEEEECTTSSEEECCCEEEEEEC
T ss_pred             ccceeeeeecCCCccceeeEcccccCCCCCcEECCCEEEEEec
Confidence            3445889999999999999999887543321  1234577764

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=89.74  E-value=0.48  Score=35.05  Aligned_cols=69  Identities=13%  Similarity=0.198  Sum_probs=45.5

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--Eec---------------cCCcEEEE-eCCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--TII---------------SKDRFKIV-NDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~~~---------------~~~~~~~~-~~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+.+|+.+.|.|... .....+.|++...  .+.               ........ ..+....|.|.++.++|++
T Consensus         7 ~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa   85 (114)
T d1ogae1           7 KYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTA   85 (114)
T ss_dssp             SEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCE
T ss_pred             CeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCce
Confidence            357799999999999875 3455788986421  100               01111111 1234557999999999999


Q ss_pred             eEEEEEEc
Q psy7040         496 IYTLAVKN  503 (716)
Q Consensus       496 ~y~~~a~n  503 (716)
                      .|-|.+..
T Consensus        86 ~YyCa~~~   93 (114)
T d1ogae1          86 FYLCASSS   93 (114)
T ss_dssp             EEEEEEES
T ss_pred             eEEEeecc
Confidence            99996653

>d2hfta1 b.1.2.1 (A:1-106) Extracellular region of human tissue factor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=2.2  Score=30.62  Aligned_cols=78  Identities=15%  Similarity=0.122  Sum_probs=52.2

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecC-C--CCCCeEEEEEEEEe
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLD-L--IEGNQYEFRVLAVN  403 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~-l--~~~~~Y~~~v~a~n  403 (716)
                      .|.|+++... +-.-.|.|.++..     -..|.|+++..+ ..|... ........+.|.+ +  .....|..||+|..
T Consensus         8 ~p~NV~~~S~-Nf~~iL~W~p~~~-----~~~YtVqy~~~~-~~W~~~-C~nit~~~CDlt~~~~~d~~~~Y~aRVrA~~   79 (106)
T d2hfta1           8 AAYNLTWKST-NFKTILEWEPKPV-----NQVYTVQISTKS-GDWKSK-CFYTTDTECDLTDEIVKDVKQTYLARVFSYP   79 (106)
T ss_dssp             CCEEEEEEEE-TTEEEEEEECCCS-----SEEEEEEEEETT-SCCEEE-EEEESCSEEECHHHHGGGTTSCEEEEEEEEE
T ss_pred             cceEEEEEEE-cCeEEEEECCCCC-----CEEEEEEEEEcC-Cchhhc-ccCcCccccccccccccCCCCCEEEEEEEEc
Confidence            4677777643 4567899998422     246999998765 567653 3445667777764 2  34678999999998


Q ss_pred             CCCCCCCCC
Q psy7040         404 KGGPGEPSD  412 (716)
Q Consensus       404 ~~g~~~~s~  412 (716)
                      ..+.+..+.
T Consensus        80 ~~~~S~~~~   88 (106)
T d2hfta1          80 AGNVESTGS   88 (106)
T ss_dssp             CSSCCCC--
T ss_pred             CCCcccccc
Confidence            777665443

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=89.50  E-value=1.4  Score=32.66  Aligned_cols=68  Identities=13%  Similarity=0.221  Sum_probs=46.8

Q ss_pred             cEEEecCCeEEEEEEEeccC--CCeEEEEeCC--eE---e-------------ccCCcEEEEeC--CCeEEEEECCCCCC
Q psy7040         435 DIKVRAGSNFEFDINVIGEP--IPTKEWLCND--IT---I-------------ISKDRFKIVND--DKSTKLKVFDSKRG  492 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p--~~~~~W~~~~--~~---~-------------~~~~~~~~~~~--~~~~~l~i~~l~~~  492 (716)
                      .+....|+.+.|.|.+.+..  ...+.|++..  ..   +             ....++.+..+  .+...|.|.++.++
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~   89 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE   89 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred             EEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccc
Confidence            46778999999999986543  3458898632  11   1             01223444432  35678999999999


Q ss_pred             CceeEEEEEE
Q psy7040         493 DSGIYTLAVK  502 (716)
Q Consensus       493 ~~~~y~~~a~  502 (716)
                      |++.|-|.+.
T Consensus        90 Dsa~YyCA~~   99 (120)
T d1ypzf1          90 DEAIYYCSYG   99 (120)
T ss_dssp             GCSEEEEEEC
T ss_pred             cceeEEEEEc
Confidence            9999999664

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=0.39  Score=35.32  Aligned_cols=27  Identities=19%  Similarity=0.182  Sum_probs=22.8

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCCC
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENING  209 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g  209 (716)
                      .+.+|+|.+++..|+|.|.|.......
T Consensus        67 ~~~sL~I~~v~~~D~G~Y~C~V~~~~~   93 (110)
T d1ncna_          67 DSWTLRLHNLQIKDKGLYQCIIHHKKP   93 (110)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEEECS
T ss_pred             CeEEEEECCCChhHCEEEEEEEEecCC
Confidence            467899999999999999998864443

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=0.42  Score=35.69  Aligned_cols=68  Identities=10%  Similarity=0.064  Sum_probs=44.3

Q ss_pred             cEEEecCCeEEEEEEEeccCCC---eEEEEeCCeEec-----------------cCCcEEEEeCCCeEEEEECCCCCCCc
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIP---TKEWLCNDITII-----------------SKDRFKIVNDDKSTKLKVFDSKRGDS  494 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~---~~~W~~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~l~~~~~  494 (716)
                      .+.+..|..+.|.|........   .+.|++....-.                 .........++....|.|.++..+|.
T Consensus         8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (118)
T d1i8lc_           8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDT   87 (118)
T ss_dssp             EEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGC
T ss_pred             EEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCC
Confidence            4667889999999998544333   478986532100                 00001122234567899999999999


Q ss_pred             eeEEEEEE
Q psy7040         495 GIYTLAVK  502 (716)
Q Consensus       495 ~~y~~~a~  502 (716)
                      +.|-|.+.
T Consensus        88 a~YyCa~~   95 (118)
T d1i8lc_          88 GLYICKVE   95 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEeEe
Confidence            99999664

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=89.14  E-value=0.27  Score=35.40  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=23.6

Q ss_pred             eEEEEeCCeEeeec---------ccce-e--eEEEEccCCCCCcEEEEEEEEcC
Q psy7040         645 ESQYLMNDKRVTID---------NVDY-F--TKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       645 ~~~W~~~~~~~~~~---------~~~~-~--~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      .+.|++||+++..+         ..+. .  ..|.+   .+.+...|+|.+.-.
T Consensus        37 ~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~   87 (101)
T d1fnga1          37 NVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDFYDCEVDHW   87 (101)
T ss_dssp             EEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECT
T ss_pred             EEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCEEEEEEEEC
Confidence            78999999987654         1111 1  23333   334445688988774

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=89.07  E-value=0.37  Score=35.51  Aligned_cols=26  Identities=15%  Similarity=0.100  Sum_probs=22.2

Q ss_pred             eeeEEEEccCCCCCcEEEEEEEEcCC
Q psy7040         662 YFTKITIRPLQRSDTAQYTVTATNSQ  687 (716)
Q Consensus       662 ~~~~~~i~~l~~~~~y~y~~~a~n~~  687 (716)
                      ....|+|.+|.++|++.|.|.+....
T Consensus        63 ~~~~L~I~~l~~~Dsa~YyCA~~~~~   88 (112)
T d1sq2n_          63 KSFSLRINDLTVEDGGTYRCGLGVAG   88 (112)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEECBTT
T ss_pred             ceeeeEecCCcCccCEEEeEEEecCC
Confidence            34689999999999999999877654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=89.04  E-value=0.82  Score=33.64  Aligned_cols=69  Identities=10%  Similarity=0.153  Sum_probs=45.9

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCC--eEec---------------cCCcEEEE-eCCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITII---------------SKDRFKIV-NDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~--~~~~---------------~~~~~~~~-~~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+.+|+.+.+.|.... ....+.|++..  ..+.               ....+... ..+....|.|.++.++|++
T Consensus         8 ~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   86 (113)
T d1j8he1           8 RYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTS   86 (113)
T ss_dssp             SEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCE
T ss_pred             CEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcc
Confidence            3567889999999998642 34567898632  1110               01222222 2345568999999999999


Q ss_pred             eEEEEEEc
Q psy7040         496 IYTLAVKN  503 (716)
Q Consensus       496 ~y~~~a~n  503 (716)
                      .|-|.+..
T Consensus        87 ~YyCa~~~   94 (113)
T d1j8he1          87 MYLCASSS   94 (113)
T ss_dssp             EEEEEEEC
T ss_pred             cEEeeEcc
Confidence            99998764

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.91  E-value=2.2  Score=28.45  Aligned_cols=71  Identities=14%  Similarity=0.124  Sum_probs=46.5

Q ss_pred             EEEecCCeEEEEEEEec-cCCCeEEEEeCCeE----eccCCcE--EEEeCC--CeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040         436 IKVRAGSNFEFDINVIG-EPIPTKEWLCNDIT----IISKDRF--KIVNDD--KSTKLKVFDSKRGDSGIYTLAVKNSWG  506 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~~~----~~~~~~~--~~~~~~--~~~~l~i~~l~~~~~~~y~~~a~n~~g  506 (716)
                      -.+..|+.+.++|.+.. .-.|.++|.|-...    +......  .....+  ....|.+..+.+.|.|.|+|.|--..|
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            35778999999999964 34678999875432    1111111  111122  234677899999999999999964443

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.90  E-value=1.5  Score=31.91  Aligned_cols=71  Identities=14%  Similarity=0.241  Sum_probs=48.7

Q ss_pred             cEEEecCCeEEEEEEEecc--CCCeEEEEeC--CeE---e-c---c--------CCcEEEEeC--CCeEEEEECCCCCCC
Q psy7040         435 DIKVRAGSNFEFDINVIGE--PIPTKEWLCN--DIT---I-I---S--------KDRFKIVND--DKSTKLKVFDSKRGD  493 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~--p~~~~~W~~~--~~~---~-~---~--------~~~~~~~~~--~~~~~l~i~~l~~~~  493 (716)
                      ...+.+|+.+++.|...+.  ....+.|++.  +..   + .   .        ..++.+..+  .+...|+|.+|+.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            4678899999999998754  3456788874  211   0 0   0        123445433  455779999999999


Q ss_pred             ceeEEEEEEcCC
Q psy7040         494 SGIYTLAVKNSW  505 (716)
Q Consensus       494 ~~~y~~~a~n~~  505 (716)
                      ++.|.|......
T Consensus        84 sa~YyCa~~~~~   95 (110)
T d1u9ka_          84 SGLYRCVIYHPP   95 (110)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEeCCC
Confidence            999999875443

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=88.89  E-value=0.017  Score=41.74  Aligned_cols=70  Identities=19%  Similarity=0.362  Sum_probs=45.2

Q ss_pred             EEEecCCeEEEEEEEeccCCCeEEEEeC--CeEec------------cCCcEEEEe--CCCeEEEEECCCCCCCceeEEE
Q psy7040         436 IKVRAGSNFEFDINVIGEPIPTKEWLCN--DITII------------SKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTL  499 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~--~~~~~------------~~~~~~~~~--~~~~~~l~i~~l~~~~~~~y~~  499 (716)
                      +.|.+|+.++|.|.... ....+.|++.  +..+.            ...++.+..  ......|.|.+++++|++.|-|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            45778999999997753 3346888863  21110            112222222  2344679999999999999999


Q ss_pred             EEEcCCC
Q psy7040         500 AVKNSWG  506 (716)
Q Consensus       500 ~a~n~~g  506 (716)
                      .+....|
T Consensus        82 A~~~~~g   88 (96)
T d1ymmd1          82 ATDTTSG   88 (96)
T ss_dssp             EEEETTS
T ss_pred             eEecCCC
Confidence            8765544

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=88.74  E-value=2.3  Score=30.39  Aligned_cols=75  Identities=15%  Similarity=0.067  Sum_probs=44.0

Q ss_pred             ecCCeEEEEEEEeccCC--CeEEEEeCCeEeccCCcEEEEeCCCe-----EEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040         439 RAGSNFEFDINVIGEPI--PTKEWLCNDITIISKDRFKIVNDDKS-----TKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  511 (716)
Q Consensus       439 ~~g~~~~~~~~v~~~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~-----~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s  511 (716)
                      ..|....|.|.+.+.-+  ..+.|.+++..............++.     ..|.|.   +.+.-.|+|.+.-..-..   
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~~l~~---   89 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFT---PEPSDIFSCIVTHEPDRY---   89 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEEC---CCTTCCEEEEEEETTTTE---
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEe---cCCCCEEEEEEEeCCCCC---
Confidence            45667789999988644  36899999988654433322222211     233333   334446788776553322   


Q ss_pred             EEEEEEEEEEEEeC
Q psy7040         512 AKVTVLGCSLKWNP  525 (716)
Q Consensus       512 ~~~~v~~v~l~W~~  525 (716)
                            .+...|++
T Consensus        90 ------p~~~~w~~   97 (103)
T d1hdma1          90 ------TAIAYWVP   97 (103)
T ss_dssp             ------EEEEEECC
T ss_pred             ------CEEEEecC
Confidence                  56677765

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.52  E-value=0.21  Score=35.65  Aligned_cols=61  Identities=11%  Similarity=0.045  Sum_probs=40.1

Q ss_pred             EeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCe--EEccccCcccceEEEcCCCCCCeEEEEEEEEc
Q psy7040         235 VHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW--TPAGETEGPVTGLEVEGLIPNHKYKFRVRAVN  302 (716)
Q Consensus       235 ~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n  302 (716)
                      ..+..++|.|+.+.     ....|.+...  +...+  ............|.|.++.+.+.+.|+|....
T Consensus        16 ~~G~~VTL~C~~~~-----~~~~f~L~ke--g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          16 TQGSPVTLRCQGGQ-----ETQEYRLYRE--KKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             ETTCCEEEEEECCT-----TCCCEEEEES--SSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCcEEEEEeCCC-----CCCEEEEEEC--CCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            46889999999542     2456766542  22211  11111124567999999999999999998754

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.49  E-value=0.25  Score=35.52  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=24.3

Q ss_pred             eEEEEeCCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         645 ESQYLMNDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       645 ~~~W~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      .+.|.++|.++...        ..+.-.......+.+++...|+|.+.-.
T Consensus        36 ~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          36 EIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHD   85 (99)
T ss_dssp             EEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             EEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeC
Confidence            78999999877554        1111122222233455556788887663

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.079  Score=38.05  Aligned_cols=40  Identities=13%  Similarity=0.074  Sum_probs=28.7

Q ss_pred             eEEEEeCCeEeeec-----ccceeeEEEEccCCCCCcEEEEEEEE
Q psy7040         645 ESQYLMNDKRVTID-----NVDYFTKITIRPLQRSDTAQYTVTAT  684 (716)
Q Consensus       645 ~~~W~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~y~y~~~a~  684 (716)
                      .+.++|+|......     ...+...|.|.++...++|+|+|...
T Consensus        33 ~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1          33 EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEe
Confidence            66777877543211     12344799999999999999999854

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=88.34  E-value=2  Score=31.51  Aligned_cols=64  Identities=19%  Similarity=0.316  Sum_probs=44.2

Q ss_pred             EEecCCeEEEEEEEeccCCC--eEEEEeC--CeEe--------------cc--CCcEEEEeC--CCeEEEEECCCCCCCc
Q psy7040         437 KVRAGSNFEFDINVIGEPIP--TKEWLCN--DITI--------------IS--KDRFKIVND--DKSTKLKVFDSKRGDS  494 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~--~~~W~~~--~~~~--------------~~--~~~~~~~~~--~~~~~l~i~~l~~~~~  494 (716)
                      .++.|+.+.|.|.+.|....  .+.|++.  ++.+              .+  ..++.+..+  .+...|.|.+|+++|.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt   90 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT   90 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence            47789999999999876543  4566643  1111              01  235666553  3556799999999999


Q ss_pred             eeEEEE
Q psy7040         495 GIYTLA  500 (716)
Q Consensus       495 ~~y~~~  500 (716)
                      ..|-|.
T Consensus        91 A~YYCA   96 (120)
T d1dn0b1          91 AVYYCA   96 (120)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            999993

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.34  E-value=1.7  Score=30.51  Aligned_cols=30  Identities=7%  Similarity=-0.066  Sum_probs=23.4

Q ss_pred             cCCeEEEEEEEeccCC--CeEEEEeCCeEecc
Q psy7040         440 AGSNFEFDINVIGEPI--PTKEWLCNDITIIS  469 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~--~~~~W~~~~~~~~~  469 (716)
                      .+..+.|.|.+.+.-+  ..+.|.+++..+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   45 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEP   45 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCC
Confidence            4677899999988533  37899999987654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=88.31  E-value=0.8  Score=33.72  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=23.4

Q ss_pred             ceeeEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040         661 DYFTKITIRPLQRSDTAQYTVTATNSQG  688 (716)
Q Consensus       661 ~~~~~~~i~~l~~~~~y~y~~~a~n~~G  688 (716)
                      .....|.|.+|.++|+|.|-|.+....|
T Consensus        69 ~~~~~L~i~~~~~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          69 SGRSTLYIAASQPGDSATYLCAVRPTSG   96 (113)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEESSS
T ss_pred             CCEEEeeeecCCCCCCcEEeEeEecCCC
Confidence            3447899999999999999999876544

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=0.33  Score=31.53  Aligned_cols=52  Identities=6%  Similarity=0.038  Sum_probs=32.0

Q ss_pred             eccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeE
Q psy7040         638 SLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI  694 (716)
Q Consensus       638 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~  694 (716)
                      +.|.  ..+.|++++..+...   ....+.+.....+..|.|+|.+.......+.+.
T Consensus        14 L~Cn--~si~W~k~~~~~~~~---~~k~lnLG~~~~DPRG~Y~C~~~e~~~~k~~~l   65 (74)
T d1xiwb_          14 VNCN--TSITWVEGTVGTLLS---DITRLDLGKRILDPRGIYRCNGTDIYKDKESTV   65 (74)
T ss_dssp             EECS--SCEEEEEECCCEEEG---GGTEEEEEEGGGCCEEEEEEC--------CEEE
T ss_pred             EEcc--CeeEEecCCcccccC---CccEeecCCcccCCCcceEeCCcccccccCccE
Confidence            5553  389999987654433   336789999999999999998765443333333

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=0.8  Score=32.39  Aligned_cols=43  Identities=9%  Similarity=0.104  Sum_probs=26.7

Q ss_pred             eEEEEeCCeEeeec-------cc--cee--eEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040         645 ESQYLMNDKRVTID-------NV--DYF--TKITIRPLQRSDTAQYTVTATNSQGKD  690 (716)
Q Consensus       645 ~~~W~~~~~~~~~~-------~~--~~~--~~~~i~~l~~~~~y~y~~~a~n~~G~~  690 (716)
                      .+.|+++|+++...       ..  .+.  ..|.|.   ..+...|+|.+....-..
T Consensus        33 ~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          33 HLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             EEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCE
T ss_pred             EEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCC
Confidence            89999999887654       11  111  234443   445678999988865443

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=88.02  E-value=0.82  Score=33.58  Aligned_cols=68  Identities=7%  Similarity=0.102  Sum_probs=44.5

Q ss_pred             cEEEecCCeEEEEEEEeccCCCeEEEEeC--CeEec------c---------CCc-EEEEeCCCeEEEEECCCCCCCcee
Q psy7040         435 DIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITII------S---------KDR-FKIVNDDKSTKLKVFDSKRGDSGI  496 (716)
Q Consensus       435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~--~~~~~------~---------~~~-~~~~~~~~~~~l~i~~l~~~~~~~  496 (716)
                      .+.+.+|+.+.|.|.... ....+.|++.  +....      .         ..+ ...........|.|.++.++|++.
T Consensus         8 ~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsav   86 (112)
T d2bnub1           8 FQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSV   86 (112)
T ss_dssp             EEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEE
T ss_pred             eEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEE
Confidence            467899999999998754 3456889863  21110      0         011 111122344689999999999999


Q ss_pred             EEEEEEc
Q psy7040         497 YTLAVKN  503 (716)
Q Consensus       497 y~~~a~n  503 (716)
                      |-|.+..
T Consensus        87 YyCA~~~   93 (112)
T d2bnub1          87 YFCASSY   93 (112)
T ss_dssp             EEEEEEC
T ss_pred             EEEeecC
Confidence            9997653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=87.84  E-value=0.96  Score=33.38  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=21.0

Q ss_pred             eEEEEccCCCCCcEEEEEEEEcC
Q psy7040         664 TKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      ..|+|.+|.++|++.|-|.+...
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          73 FHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEESS
T ss_pred             EEEeeccccccCCccceeeecCC
Confidence            57999999999999999999764

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=87.79  E-value=0.44  Score=33.96  Aligned_cols=43  Identities=14%  Similarity=0.196  Sum_probs=26.4

Q ss_pred             eEEEEeCCeEeeec---------ccceeeEEEEccCCCCCcEEEEEEEEcCC
Q psy7040         645 ESQYLMNDKRVTID---------NVDYFTKITIRPLQRSDTAQYTVTATNSQ  687 (716)
Q Consensus       645 ~~~W~~~~~~~~~~---------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~  687 (716)
                      .+.|.++|+++..+         ..+.-.......+..+....|+|.+.-..
T Consensus        34 ~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          34 KVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             EEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTT
T ss_pred             EEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCC
Confidence            89999999877654         11111222333445566668899987753

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=87.69  E-value=0.67  Score=32.98  Aligned_cols=45  Identities=16%  Similarity=0.081  Sum_probs=26.3

Q ss_pred             eEEEEeCCeEeeecc---------cceeeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         645 ESQYLMNDKRVTIDN---------VDYFTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~---------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                      .++|.++|+.+..+.         .+.-.......+.+++...|+|.+......
T Consensus        35 ~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          35 TITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             EEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTSS
T ss_pred             EEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCC
Confidence            889999998875440         111111112233455555799999886443

>d2hyma1 b.1.2.1 (A:1-109) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-alpha/beta receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.69  E-value=3.6  Score=29.57  Aligned_cols=65  Identities=6%  Similarity=0.027  Sum_probs=45.1

Q ss_pred             CCeEEEEEECCCCCCCCccceEEEEEEeCC-CCCeEEcccc-CcccceEEEcC--CCCCCeEEEEEEEEcC
Q psy7040         237 AEGVTLDWKVPDDDGGQPIEKYVVDKMDEA-TGRWTPAGET-EGPVTGLEVEG--LIPNHKYKFRVRAVNK  303 (716)
Q Consensus       237 ~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~-~~~~~~~~i~~--L~p~~~y~~~v~a~n~  303 (716)
                      +-.-.|.|++...  ..+-..|.++++..+ ...|...... ......+.+.+  +.+...|..+|+|..+
T Consensus        20 Nf~~iL~W~p~~~--s~~~~~YtVqy~~~~~~~~W~~v~~C~~it~t~CDLT~e~~~~~~~Y~~RV~A~~G   88 (109)
T d2hyma1          20 NFRSILSWELKNH--SIVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSG   88 (109)
T ss_dssp             SSCEEEEEECCCS--SCCCCEEEEEEEETTCTTCCEECSSSSSBSCSEEECTTTCCCSSSCEEEEEEEEET
T ss_pred             CCceEEEECCCCC--CCCCeEEEEEEEEEcccccCccchhhhCCCCCeEeCchhhccCCccEEEEEEEEcC
Confidence            4567899996432  223568999998654 4568876433 34566777766  4578889999999864

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=87.52  E-value=0.44  Score=34.10  Aligned_cols=42  Identities=21%  Similarity=0.214  Sum_probs=24.3

Q ss_pred             eEEEEeCCeEeeec---------ccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         645 ESQYLMNDKRVTID---------NVDYFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       645 ~~~W~~~~~~~~~~---------~~~~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      .++|.++|+++..+         ..+.-.......+.+.+.-.|+|.+.-.
T Consensus        37 ~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          37 NITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHW   87 (99)
T ss_dssp             EEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             EEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            78999999988654         1111112222223344455789998775

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=87.23  E-value=0.49  Score=34.93  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      ...|+|.+|+++|++.|.|.+...
T Consensus        65 ~~~L~I~~l~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_          65 SFSLRISDLRVEDSGTYKCQAFYS   88 (113)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             ceeeeecccccCCcceEeeeeecc
Confidence            368999999999999999998654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=87.21  E-value=0.31  Score=35.53  Aligned_cols=32  Identities=6%  Similarity=-0.051  Sum_probs=25.8

Q ss_pred             eEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       175 ~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      ++.....+....|+|.+++++|++.|.|.+.+
T Consensus        60 ~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          60 RFRGSGSGRDYSFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             TEEEEEETTEEEEEECSCCGGGCSEEEEEECS
T ss_pred             ceEeecCCCEeeeEehhhcccCCEeEEEEEeC
Confidence            44555556678999999999999999998753

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=87.14  E-value=1.1  Score=32.70  Aligned_cols=22  Identities=14%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             eEEEEccCCCCCcEEEEEEEEc
Q psy7040         664 TKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       664 ~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      ..|+|.+|.++|++.|-|.+..
T Consensus        73 ~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          73 STLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCcccCCCceEEEeeeC
Confidence            6899999999999999998764

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=86.99  E-value=1.7  Score=30.61  Aligned_cols=65  Identities=11%  Similarity=0.099  Sum_probs=41.8

Q ss_pred             EeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccc--cCcccceEEEcCCCCCCeEEEEEEEEcCC
Q psy7040         235 VHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE--TEGPVTGLEVEGLIPNHKYKFRVRAVNKQ  304 (716)
Q Consensus       235 ~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~~~y~~~v~a~n~~  304 (716)
                      ..+..++|.|..+.     ....|.+...............  .......|.|..+.+.+.++|+|......
T Consensus        14 ~~G~~VTl~C~~~~-----~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   80 (96)
T d1nkra1          14 KSEETVILQCWSDV-----MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTH   80 (96)
T ss_dssp             ETTCCEEEEEEESS-----CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTT
T ss_pred             CCCCcEEEEECCCC-----CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcCC
Confidence            35789999999543     2456766654332221222111  12345689999999999999999887654

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=0.51  Score=31.61  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=25.7

Q ss_pred             eccCcee--eEEEEeCCeE-e-eecccceeeEEEEccCCCCCcEEEEEE
Q psy7040         638 SLMPISL--ESQYLMNDKR-V-TIDNVDYFTKITIRPLQRSDTAQYTVT  682 (716)
Q Consensus       638 ~~~~~~~--~~~W~~~~~~-~-~~~~~~~~~~~~i~~l~~~~~y~y~~~  682 (716)
                      +.|...-  .|.|.+++.. + ..+     ..++|.==...++|+|+|.
T Consensus        26 L~C~t~eE~~I~W~kd~~se~~~~G-----ntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          26 LTCDTPEEDGITWTLDQSSEVLGSG-----KTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             EECSSSCCSSCEEEETTCCCCCEES-----SEEEEEECSGGGCEEEEEE
T ss_pred             EecCCCcccccEEeeCCccccccCC-----CEEEEEEEeccCCcceeEe
Confidence            6665444  7999998654 2 222     4555533334689999997

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=86.66  E-value=1.7  Score=30.70  Aligned_cols=30  Identities=13%  Similarity=0.014  Sum_probs=20.0

Q ss_pred             cCCeEEEEEEEeccCC--CeEEEEeCCeEecc
Q psy7040         440 AGSNFEFDINVIGEPI--PTKEWLCNDITIIS  469 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~--~~~~W~~~~~~~~~  469 (716)
                      .+....|.|.+.+.-+  ..+.|.+++..+..
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~   46 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETA   46 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCC
Confidence            3455679999987644  46899999977643

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=86.63  E-value=3.5  Score=30.08  Aligned_cols=67  Identities=19%  Similarity=0.315  Sum_probs=45.8

Q ss_pred             EEEecCCeEEEEEEEeccCCC--eEEEEeCC--e--------------Eecc--CCcEEEEeC--CCeEEEEECCCCCCC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIP--TKEWLCND--I--------------TIIS--KDRFKIVND--DKSTKLKVFDSKRGD  493 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~--~~~W~~~~--~--------------~~~~--~~~~~~~~~--~~~~~l~i~~l~~~~  493 (716)
                      -.+++|+.+.|.|.+.+....  .+.|++..  +              ...+  ..++.+..+  .+...|.|.+|+++|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            357889999999999876543  35666431  1              0011  235666554  355679999999999


Q ss_pred             ceeEEEEEE
Q psy7040         494 SGIYTLAVK  502 (716)
Q Consensus       494 ~~~y~~~a~  502 (716)
                      +..|-|...
T Consensus        89 tA~YYCAr~   97 (119)
T d1kxvc_          89 TAMYYCKPS   97 (119)
T ss_dssp             CEEEEEEEE
T ss_pred             cceEeeeec
Confidence            999999654

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.53  E-value=0.32  Score=36.23  Aligned_cols=26  Identities=19%  Similarity=0.179  Sum_probs=22.1

Q ss_pred             CccEEEEeccccCcceEEEEEEEeCC
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENIN  208 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~~  208 (716)
                      .+.+|+|.+++..|+|.|.|.+....
T Consensus        77 ~~~sL~I~~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          77 KVCNLLLKDLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEECC-
T ss_pred             CEEEEEECCCChhHCEEEEEEEEeCC
Confidence            46789999999999999999887543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.45  E-value=2.4  Score=29.94  Aligned_cols=66  Identities=14%  Similarity=0.167  Sum_probs=39.7

Q ss_pred             EeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEE-cc--ccCcccceEEEcCCCCCCeEEEEEEEEcCCC
Q psy7040         235 VHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTP-AG--ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG  305 (716)
Q Consensus       235 ~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~-~~--~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g  305 (716)
                      ..+..++|.|..+.     ....|.+............ ..  ...+....|.|..+.+.+.++|+|.-.....
T Consensus        16 ~~G~~VTL~C~~~~-----~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~   84 (98)
T d1ugna2          16 NSGGNVTLQCDSQV-----AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS   84 (98)
T ss_dssp             ETTCCEEEEEECSS-----CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             CCCCcEEEEeCCCC-----CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcCCC
Confidence            45789999999543     2456666542221111111 11  1123456899999999999999999876554

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.09  E-value=0.49  Score=33.48  Aligned_cols=60  Identities=8%  Similarity=0.111  Sum_probs=32.3

Q ss_pred             cceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         619 LTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       619 ~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      +..++|.+.+.||.=.  .+      .+.|.++|.++...        ..+.........+.+++.-.|+|.+.-.
T Consensus        15 ~~~~tL~C~~~gFyP~--~i------~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~   82 (94)
T d1t7va1          15 GEKKKLKCLAYDFYPG--KI------DVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHS   82 (94)
T ss_dssp             TSCEEEEEEEEEEBSS--CE------EEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEET
T ss_pred             CCCEEEEEEEEeEECC--CC------EEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEEC
Confidence            4456666655555210  00      78999999877554        1111122233333445555688887664

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=86.04  E-value=0.91  Score=33.50  Aligned_cols=25  Identities=20%  Similarity=0.088  Sum_probs=21.4

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEcCC
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATNSQ  687 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n~~  687 (716)
                      ...|+|.+++++|+|.|.|.+....
T Consensus        72 ~~~L~I~~~~~~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          72 SFHLQKSSAQLSDSALYYCALFLAS   96 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEECS
T ss_pred             eEEeeccccccccCccceEEEEcCC
Confidence            3679999999999999999876643

>d1a21a1 b.1.2.1 (A:4-106) Extracellular region of human tissue factor {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.54  E-value=2.9  Score=29.75  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=50.1

Q ss_pred             CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecC--CCC-CCeEEEEEEEEe
Q psy7040         327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLD--LIE-GNQYEFRVLAVN  403 (716)
Q Consensus       327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--l~~-~~~Y~~~v~a~n  403 (716)
                      .|.|+++... +-...|.|+++..     -..|.|+++..+ ..|... ........+.|.+  +.+ ...|..||+|..
T Consensus         3 k~~NV~~~S~-Nf~~iL~W~p~~~-----~~~YtVqy~~~~-~~W~~~-C~nit~~~CDlt~~~~~~~~~~Y~aRVra~~   74 (103)
T d1a21a1           3 RAYNLTWKST-NFKTILEWEPKSI-----DHVYTVQISTRL-ENWKSK-CFLTAETECDLTDEVVKDVGQTYMARVLSYP   74 (103)
T ss_dssp             CCEEEEEEEE-TTEEEEEEECCCS-----SEEEEEEEECSS-SCCEEE-EEEESSSEEECHHHHTTCTTSCBEEEEEEEE
T ss_pred             CCEEEEEEEE-cCceEEEECCCCC-----CeEEEEEEEecC-CCcccc-ccCcCcceecCcccccccCCCCEEEEEEEec
Confidence            4566666643 4467899998422     245999998765 578643 3455677777764  344 467999999998


Q ss_pred             CCCCCCC
Q psy7040         404 KGGPGEP  410 (716)
Q Consensus       404 ~~g~~~~  410 (716)
                      ..+.+..
T Consensus        75 ~~~~s~~   81 (103)
T d1a21a1          75 ARNGNTT   81 (103)
T ss_dssp             CCC--CC
T ss_pred             CCCcccc
Confidence            7765543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.48  E-value=1.5  Score=30.78  Aligned_cols=29  Identities=10%  Similarity=0.044  Sum_probs=23.0

Q ss_pred             CCeEEEEEEEeccCCC--eEEEEeCCeEecc
Q psy7040         441 GSNFEFDINVIGEPIP--TKEWLCNDITIIS  469 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~--~~~W~~~~~~~~~  469 (716)
                      +..+.|.|.+.+.-+.  .++|.+++..+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~   45 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQ   45 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGG
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCC
Confidence            4578999999887655  5799999987754

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.14  E-value=3.3  Score=30.43  Aligned_cols=66  Identities=11%  Similarity=0.022  Sum_probs=40.9

Q ss_pred             EEecCCeEEEEEEEeccCCCe---EEEEeCCe-Ee---------------ccCCcE--EEEeCCCeEEEEECCCCCCCce
Q psy7040         437 KVRAGSNFEFDINVIGEPIPT---KEWLCNDI-TI---------------ISKDRF--KIVNDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~~---~~W~~~~~-~~---------------~~~~~~--~~~~~~~~~~l~i~~l~~~~~~  495 (716)
                      .+..|..++|.|.........   +.|++... ..               ....++  ......+...|.|.++.++|++
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   90 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD   90 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence            366788899999886543322   23443211 00               011222  2334456678999999999999


Q ss_pred             eEEEEEE
Q psy7040         496 IYTLAVK  502 (716)
Q Consensus       496 ~y~~~a~  502 (716)
                      .|.|.+.
T Consensus        91 vYyCa~~   97 (118)
T d1yjdc1          91 IYFCKIE   97 (118)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999654

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=84.95  E-value=1.1  Score=32.86  Aligned_cols=70  Identities=17%  Similarity=0.201  Sum_probs=46.0

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeE--e------c---------cCCcEEEE-eCCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT--I------I---------SKDRFKIV-NDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~--~------~---------~~~~~~~~-~~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+.+|..+.|.|.... ....+.|++....  .      .         ...++... ..+....|.|.+++++|++
T Consensus         9 ~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   87 (113)
T d1nfdb1           9 RHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSA   87 (113)
T ss_dssp             SEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCE
T ss_pred             CEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCce
Confidence            3567899999999998643 3456889865321  0      0         01122222 2234568999999999999


Q ss_pred             eEEEEEEcC
Q psy7040         496 IYTLAVKNS  504 (716)
Q Consensus       496 ~y~~~a~n~  504 (716)
                      .|-|.+...
T Consensus        88 ~YyCa~~~~   96 (113)
T d1nfdb1          88 MYFCASSLR   96 (113)
T ss_dssp             EECEEEESS
T ss_pred             eEEEEeecC
Confidence            999977543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.91  E-value=0.35  Score=34.36  Aligned_cols=42  Identities=14%  Similarity=0.181  Sum_probs=23.4

Q ss_pred             eEEEEeCCeEeeecc---------cceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         645 ESQYLMNDKRVTIDN---------VDYFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       645 ~~~W~~~~~~~~~~~---------~~~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      .++|.++|+.+....         .+.........+..++.-.|+|.+.-.
T Consensus        33 ~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          33 TLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHE   83 (95)
T ss_dssp             EEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECT
T ss_pred             EEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEEC
Confidence            889999998876551         111122222223344445678887763

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=84.90  E-value=0.47  Score=34.53  Aligned_cols=34  Identities=9%  Similarity=-0.053  Sum_probs=26.9

Q ss_pred             CceEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         173 GMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       173 ~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      ..++.....+....|+|.+++++|++.|.|.+.+
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          59 PSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CcceeEeCCCCeeeecccCCccccCEEEeEecCc
Confidence            3455555556678999999999999999997653

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=84.87  E-value=0.69  Score=33.99  Aligned_cols=71  Identities=8%  Similarity=0.100  Sum_probs=45.7

Q ss_pred             ccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--Eec---------------cCCcEEEE-eCCCeEEEEECCCCCCCce
Q psy7040         434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--TII---------------SKDRFKIV-NDDKSTKLKVFDSKRGDSG  495 (716)
Q Consensus       434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~~~---------------~~~~~~~~-~~~~~~~l~i~~l~~~~~~  495 (716)
                      ..+.+.+|..+.|.|.... ....+.|++...  .+.               ........ .......|.|.+++++|++
T Consensus         6 ~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   84 (112)
T d2cdeb1           6 RYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTS   84 (112)
T ss_dssp             SEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCS
T ss_pred             CEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccc
Confidence            3467889999999998653 345688986421  100               00111111 1224567999999999999


Q ss_pred             eEEEEEEcCC
Q psy7040         496 IYTLAVKNSW  505 (716)
Q Consensus       496 ~y~~~a~n~~  505 (716)
                      .|-|.+....
T Consensus        85 ~YyCA~~~~~   94 (112)
T d2cdeb1          85 QYLCASSENI   94 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             cEEEEEecCC
Confidence            9999876443

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=84.74  E-value=1.7  Score=31.79  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             eeEEEEccCCCCCcEEEEEEEEc
Q psy7040         663 FTKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       663 ~~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      ...|+|.++.++|++.|-|.+.-
T Consensus        72 ~~~L~I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          72 VSTLKIQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             CEEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEEECCCCcCCCEEEEEeeeC
Confidence            36899999999999999998753

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=84.68  E-value=0.94  Score=33.31  Aligned_cols=28  Identities=29%  Similarity=0.464  Sum_probs=23.2

Q ss_pred             eeeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040         662 YFTKITIRPLQRSDTAQYTVTATNSQGK  689 (716)
Q Consensus       662 ~~~~~~i~~l~~~~~y~y~~~a~n~~G~  689 (716)
                      ....|.|.++.++|++.|-|.+....|.
T Consensus        69 ~~~~L~I~~~~~~Dsa~YyCa~~~~~~~   96 (113)
T d1h5ba_          69 RYSTLHIRDAQLEDSGTYFCAAEASSGS   96 (113)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEEECSSSS
T ss_pred             ceeEEEECCCCHhHCEEEEEEecCCCCC
Confidence            3367999999999999999998765543

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.64  E-value=0.4  Score=33.68  Aligned_cols=14  Identities=14%  Similarity=0.114  Sum_probs=11.5

Q ss_pred             eEEEEeCCeEeeec
Q psy7040         645 ESQYLMNDKRVTID  658 (716)
Q Consensus       645 ~~~W~~~~~~~~~~  658 (716)
                      .++|.++|.++...
T Consensus        33 ~v~W~~ng~~~~~~   46 (91)
T d3frua1          33 KFRFLRNGLASGSG   46 (91)
T ss_dssp             EEEEEETTEECCCC
T ss_pred             EEEEEECCEeCCcc
Confidence            88999999877554

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.62  E-value=0.5  Score=34.96  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=27.6

Q ss_pred             CceEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         173 GMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       173 ~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      ..++.+........|+|.+++++|+|.|.|.+..
T Consensus        65 ~~rfs~~~~~~~~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          65 TQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             TTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEECCCCChhcEEccCCCCCCEEEeEeEcC
Confidence            3456666666678999999999999999998763

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=84.17  E-value=0.91  Score=33.14  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=21.4

Q ss_pred             ceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040         661 DYFTKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       661 ~~~~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      .....|.|.+|.++|++.|-|.+.-
T Consensus        68 ~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          68 EKKLSLHIADSQPGDSATYFCAASA   92 (110)
T ss_dssp             GGEEEEEESSCCTTSCSEEEECCEE
T ss_pred             CCeeEeEeccCCCCCceeEeeeecC
Confidence            3346899999999999999998763

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=84.15  E-value=1  Score=32.05  Aligned_cols=65  Identities=20%  Similarity=0.187  Sum_probs=39.0

Q ss_pred             EeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCC
Q psy7040         235 VHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQ  304 (716)
Q Consensus       235 ~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~  304 (716)
                      ..+..++|.|+.+.     ....|.+......................+.|..+...+.++|+|......
T Consensus        18 ~~G~~VTL~C~~~~-----~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~   82 (99)
T d1nkra2          18 LAGENVTLSCSSRS-----SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHD   82 (99)
T ss_dssp             CTTCEEEEEEEESS-----CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETT
T ss_pred             cCCCeEEEEECCCC-----CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCC
Confidence            35789999999543     244566654221111112222222334567888888889999999876543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=83.54  E-value=3  Score=30.55  Aligned_cols=68  Identities=12%  Similarity=0.211  Sum_probs=46.0

Q ss_pred             EEEecCCeEEEEEEEeccCCC--eEEEEeCC--eE---------------ec--cCCcEEEEeC--CCeEEEEECCCCCC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIP--TKEWLCND--IT---------------II--SKDRFKIVND--DKSTKLKVFDSKRG  492 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~--~~~W~~~~--~~---------------~~--~~~~~~~~~~--~~~~~l~i~~l~~~  492 (716)
                      ..+++|+.+.|.|.+.|....  .+.|.+..  +.               ..  -..++.+..+  .+...|.+.+|+++
T Consensus        11 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~e   90 (122)
T d1vgeh1          11 EVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPE   90 (122)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCC
Confidence            457899999999999876433  45665421  11               00  1245555554  35567999999999


Q ss_pred             CceeEEEEEEc
Q psy7040         493 DSGIYTLAVKN  503 (716)
Q Consensus       493 ~~~~y~~~a~n  503 (716)
                      |...|-|....
T Consensus        91 DtA~YYCAr~~  101 (122)
T d1vgeh1          91 DTAVYYCARDP  101 (122)
T ss_dssp             GCEEEEEEEET
T ss_pred             cceEEEEeecC
Confidence            99999996653

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.48  E-value=0.81  Score=33.43  Aligned_cols=34  Identities=15%  Similarity=0.030  Sum_probs=27.4

Q ss_pred             CceEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         173 GMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       173 ~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      ..|+..........|.|.+++++|++.|.|.+..
T Consensus        61 ~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          61 PARFSGSLIGNKAALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             ceeeeecccccceeeecCCCCccccEeEEEEccc
Confidence            3455555566778999999999999999998764

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.47  E-value=4.7  Score=29.30  Aligned_cols=24  Identities=8%  Similarity=-0.020  Sum_probs=20.7

Q ss_pred             ccceEEEcCCCCCCeEEEEEEEEc
Q psy7040         279 PVTGLEVEGLIPNHKYKFRVRAVN  302 (716)
Q Consensus       279 ~~~~~~i~~L~p~~~y~~~v~a~n  302 (716)
                      ....+.|.++++.+...|.|.+..
T Consensus        71 ~~~~L~I~~~~~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          71 HDFHMNILDTRRNDSGIYLCGAIS   94 (114)
T ss_dssp             SEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CEEEEEECccCcCCCeEEEEEEEe
Confidence            345689999999999999998865

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=83.38  E-value=4.8  Score=29.25  Aligned_cols=69  Identities=20%  Similarity=0.291  Sum_probs=45.8

Q ss_pred             EEEecCCeEEEEEEEeccCCC--eEEEEeC--CeEe---------------c--cCCcEEEEeC--CCeEEEEECCCCCC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIP--TKEWLCN--DITI---------------I--SKDRFKIVND--DKSTKLKVFDSKRG  492 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~--~~~W~~~--~~~~---------------~--~~~~~~~~~~--~~~~~l~i~~l~~~  492 (716)
                      ..+++|+.+.|.|.+.|....  .+.|.+.  ++.+               .  -..++.+..+  .+...|.+.+|+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            457889999999999876433  3556532  1110               0  1234555544  35567999999999


Q ss_pred             CceeEEEEEEcC
Q psy7040         493 DSGIYTLAVKNS  504 (716)
Q Consensus       493 ~~~~y~~~a~n~  504 (716)
                      |...|-|.....
T Consensus        90 DtAvYYCAr~~~  101 (118)
T d2fbjh1          90 DTALYYCARLHY  101 (118)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cceEEEeeEecC
Confidence            999999976543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.30  E-value=0.92  Score=31.07  Aligned_cols=51  Identities=22%  Similarity=0.326  Sum_probs=37.4

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCC-CCceeEEEEE
Q psy7040         440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR-GDSGIYTLAV  501 (716)
Q Consensus       440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~-~~~~~y~~~a  501 (716)
                      .|..+.|.|.+.+.  ..+.|.+++..+....         ...|.+.++.. +++|.|.|..
T Consensus        13 SGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~---------~~~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2          13 SGTSVELTCPLDSD--ENLKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             ETTEEEEECSSCCC--TTCEEEETTEEECSCC---------CSEEEEESCCTTTSCEEEEEEC
T ss_pred             eCCEEEEECCCCCC--CceEEeeccccCCCCC---------CcEEEEccccccccCcceEEec
Confidence            57888999976543  4699999998765432         33567777755 6899999964

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.28  E-value=2.3  Score=31.23  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=21.0

Q ss_pred             eeeEEEEccCCCCCcEEEEEEEEc
Q psy7040         662 YFTKITIRPLQRSDTAQYTVTATN  685 (716)
Q Consensus       662 ~~~~~~i~~l~~~~~y~y~~~a~n  685 (716)
                      ....|.|.+|.++|++.|-|.+..
T Consensus        73 ~~~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          73 SRVNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CEEEEEhhcCccccCEeEEEEEec
Confidence            347899999999999999998764

>d1edqa1 b.1.18.2 (A:24-132) Chitinase A, N-terminal domain N {Serratia marcescens [TaxId: 615]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Chitinase A, N-terminal domain N
species: Serratia marcescens [TaxId: 615]

Probab=83.23  E-value=2.1  Score=30.57  Aligned_cols=42  Identities=17%  Similarity=0.155  Sum_probs=27.3

Q ss_pred             EeCCeEeeecccc-eeeEEEEccCCCCCcEEEEEEEEcCCCCce
Q psy7040         649 LMNDKRVTIDNVD-YFTKITIRPLQRSDTAQYTVTATNSQGKDQ  691 (716)
Q Consensus       649 ~~~~~~~~~~~~~-~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~  691 (716)
                      +.||..+...... ......+ ....+-.|.|+|...|..|.+.
T Consensus        57 ~~dg~~V~~g~~~~~~~~a~f-~v~kgG~y~m~V~LcN~~Gcs~   99 (109)
T d1edqa1          57 LLNGKEAWSGPSTGSSGTANF-KVNKGGRYQMQVALCNADGCTA   99 (109)
T ss_dssp             EETTEEEEEEECCSSEEEEEE-EECSCEEEEEEEEEEETTEEEE
T ss_pred             EECCEEEEeccCCcCceEEEE-EecCCCEEEEEEEEEcCCCccc
Confidence            5677777665222 2233333 4466778999999999999664

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=82.76  E-value=3.2  Score=29.63  Aligned_cols=67  Identities=21%  Similarity=0.314  Sum_probs=45.2

Q ss_pred             EEEecCCeEEEEEEEeccCCC--eEEEEeC--CeE-----------------ecc--CCcEEEEeC--CCeEEEEECCCC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIP--TKEWLCN--DIT-----------------IIS--KDRFKIVND--DKSTKLKVFDSK  490 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~--~~~W~~~--~~~-----------------~~~--~~~~~~~~~--~~~~~l~i~~l~  490 (716)
                      ..++.|+.+.|.|.+.|....  .+.|.+.  +..                 ..+  ..++.+..+  .+...|.+.+|+
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            457889999999999875433  4556532  111                 011  125566654  455679999999


Q ss_pred             CCCceeEEEEEE
Q psy7040         491 RGDSGIYTLAVK  502 (716)
Q Consensus       491 ~~~~~~y~~~a~  502 (716)
                      ++|+..|-|-..
T Consensus        90 ~eDTAvYYCAr~  101 (109)
T d2ck0h1          90 TEDTGIYYCVRG  101 (109)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HhHCEEEEEEEc
Confidence            999999999643

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=82.64  E-value=0.57  Score=34.13  Aligned_cols=33  Identities=15%  Similarity=0.133  Sum_probs=26.2

Q ss_pred             ceEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       174 ~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      .++.....+....|+|.+++++|++.|.|.+.+
T Consensus        60 ~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQAN   92 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CcceecccCCEEEEEEcccCcCCCEEEEEEcCC
Confidence            345555566678999999999999999996643

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=82.60  E-value=0.79  Score=33.10  Aligned_cols=31  Identities=13%  Similarity=-0.023  Sum_probs=24.3

Q ss_pred             eEEEEecCCccEEEEeccccCcceEEEEEEE
Q psy7040         175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAE  205 (716)
Q Consensus       175 ~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  205 (716)
                      ++.....+....|.|.+++++|++.|.|.+.
T Consensus        59 ~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          59 RFSGSGSGTSYSLTISSMETEDAATYYCQQW   89 (104)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             eEEEecCCCEEEEEecccCcccCCeEEEEec
Confidence            3444445567889999999999999999653

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=82.14  E-value=3.3  Score=30.02  Aligned_cols=67  Identities=19%  Similarity=0.255  Sum_probs=44.9

Q ss_pred             EEEecCCeEEEEEEEeccCCC--eEEEEeCC--e---------------Eec--cCCcEEEEeC--CCeEEEEECCCCCC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIP--TKEWLCND--I---------------TII--SKDRFKIVND--DKSTKLKVFDSKRG  492 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~--~~~W~~~~--~---------------~~~--~~~~~~~~~~--~~~~~l~i~~l~~~  492 (716)
                      ..++.|+.+.|.|.+.|....  .+.|.+.-  +               ...  -..++.+..+  .+...|.+.+|+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            457889999999999876533  45565421  1               000  1234555544  45567899999999


Q ss_pred             CceeEEEEEE
Q psy7040         493 DSGIYTLAVK  502 (716)
Q Consensus       493 ~~~~y~~~a~  502 (716)
                      |...|-|...
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jpth1          90 DTAVYYCARD   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeec
Confidence            9999999553

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.08  E-value=0.72  Score=33.47  Aligned_cols=32  Identities=9%  Similarity=0.028  Sum_probs=25.5

Q ss_pred             ceEEEEecCCccEEEEeccccCcceEEEEEEE
Q psy7040         174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAE  205 (716)
Q Consensus       174 ~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  205 (716)
                      .++..........|.|.+++++|++.|.|.+.
T Consensus        59 ~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          59 ARFSGSGSGTDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CceeeecCCCEEEeEECCcChhhCCCcccccc
Confidence            34555555667899999999999999999654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=81.93  E-value=0.62  Score=33.88  Aligned_cols=31  Identities=10%  Similarity=-0.047  Sum_probs=24.3

Q ss_pred             EEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       176 ~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      +.....+....|+|.+++++|++.|.|.+.+
T Consensus        62 ~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          62 FSGSRSGSDYSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             EEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             eEecccCCEEEEEEhhhcccCCeEEEEecCc
Confidence            3334445567899999999999999997654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=81.92  E-value=0.74  Score=33.40  Aligned_cols=32  Identities=13%  Similarity=-0.101  Sum_probs=25.5

Q ss_pred             eEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       175 ~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      ++..........|.|.+++++|++.|.|.+..
T Consensus        60 ~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          60 RFSGSGSGTEFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             TEEEEEETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred             ceeeeccCCEEEEEEccccccCCCcEeeeeCC
Confidence            44455555677899999999999999997653

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.62  E-value=7.7  Score=28.27  Aligned_cols=68  Identities=16%  Similarity=0.300  Sum_probs=45.3

Q ss_pred             EEEecCCeEEEEEEEeccCCC--eEEEEeC--CeEe------c-----------cCCcEEEEeC--CCeEEEEECCCCCC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIP--TKEWLCN--DITI------I-----------SKDRFKIVND--DKSTKLKVFDSKRG  492 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~--~~~W~~~--~~~~------~-----------~~~~~~~~~~--~~~~~l~i~~l~~~  492 (716)
                      ..++.|+.+.|.|.+.+....  .+.|++.  +..+      .           -..++.+..+  .+...|.|.+|+++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            357889999999998865432  4566542  1111      0           1235555543  45667999999999


Q ss_pred             CceeEEEEEEc
Q psy7040         493 DSGIYTLAVKN  503 (716)
Q Consensus       493 ~~~~y~~~a~n  503 (716)
                      |...|-|....
T Consensus        90 DtA~YYCAr~~  100 (120)
T d1pg7x1          90 DSAVYYCARED  100 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEeeecC
Confidence            99999997643

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=81.57  E-value=1.9  Score=31.52  Aligned_cols=32  Identities=16%  Similarity=0.073  Sum_probs=25.4

Q ss_pred             eEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       175 ~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      ++..........|+|.+++++|++.|.|.+..
T Consensus        62 ~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          62 RFSASKSGTSASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cceecCCCCeeeeEecccCcccCceEEEeecC
Confidence            34444455678999999999999999998764

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.56  E-value=4  Score=29.57  Aligned_cols=66  Identities=15%  Similarity=0.243  Sum_probs=43.5

Q ss_pred             EEEecCCeEEEEEEEeccCC--CeEEEEeC--CeEe------c-----------cCCcEEEEeC--CCeEEEEECCCCCC
Q psy7040         436 IKVRAGSNFEFDINVIGEPI--PTKEWLCN--DITI------I-----------SKDRFKIVND--DKSTKLKVFDSKRG  492 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~--~~~~W~~~--~~~~------~-----------~~~~~~~~~~--~~~~~l~i~~l~~~  492 (716)
                      ..++.|+.+.|.|.+.|...  ..+.|++.  +..+      .           -..++.+..+  .+...|.|.+|+++
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            34788999999999987532  34566542  1111      0           0134555543  34567999999999


Q ss_pred             CceeEEEEE
Q psy7040         493 DSGIYTLAV  501 (716)
Q Consensus       493 ~~~~y~~~a  501 (716)
                      |...|-|..
T Consensus        90 DtAvYYCAr   98 (115)
T d1f3dh1          90 DSAVYYCAN   98 (115)
T ss_dssp             GCEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999943

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.52  E-value=5.1  Score=28.33  Aligned_cols=63  Identities=14%  Similarity=0.211  Sum_probs=37.0

Q ss_pred             CCeEEEEEEEeccCCC--eEEEEeCC--eEe---------------c--cCCcEEEEeC--CCeEEEEECCCCCCCceeE
Q psy7040         441 GSNFEFDINVIGEPIP--TKEWLCND--ITI---------------I--SKDRFKIVND--DKSTKLKVFDSKRGDSGIY  497 (716)
Q Consensus       441 g~~~~~~~~v~~~p~~--~~~W~~~~--~~~---------------~--~~~~~~~~~~--~~~~~l~i~~l~~~~~~~y  497 (716)
                      |+.++|.|.+.|....  .+.|.+..  +.+               .  -..++.+..+  .+...|.+.+|+++|...|
T Consensus         2 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAvY   81 (103)
T d1oari_           2 GASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVY   81 (103)
T ss_dssp             CCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSEE
T ss_pred             CCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEEE
Confidence            6778899998876443  46666421  111               0  1234555544  3556799999999999999


Q ss_pred             EEEEEc
Q psy7040         498 TLAVKN  503 (716)
Q Consensus       498 ~~~a~n  503 (716)
                      -|....
T Consensus        82 YCAr~~   87 (103)
T d1oari_          82 YCARMW   87 (103)
T ss_dssp             EEEEEE
T ss_pred             EeEEEC
Confidence            996543

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=81.50  E-value=0.97  Score=33.16  Aligned_cols=34  Identities=12%  Similarity=-0.008  Sum_probs=26.5

Q ss_pred             eEEEEecCCccEEEEeccccCcceEEEEEEEeCC
Q psy7040         175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENIN  208 (716)
Q Consensus       175 ~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  208 (716)
                      ++..........|+|.+|+++|++.|.|.+.+..
T Consensus        63 ~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          63 RFSGSKSGNSASLTISGLQAEDEADYYCSSYDGS   96 (112)
T ss_dssp             TEEEEEETTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             cEEEECCCCEeeEEeCcCccccCEEEEEeeecCC
Confidence            3444445567889999999999999999876543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.46  E-value=3.4  Score=30.03  Aligned_cols=66  Identities=15%  Similarity=0.280  Sum_probs=44.7

Q ss_pred             EEEecCCeEEEEEEEeccCCC--eEEEEeCC--eE------ec-----------cCCcEEEEeC--CCeEEEEECCCCCC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIP--TKEWLCND--IT------II-----------SKDRFKIVND--DKSTKLKVFDSKRG  492 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~--~~~W~~~~--~~------~~-----------~~~~~~~~~~--~~~~~l~i~~l~~~  492 (716)
                      ..++.|+.+.|.|.+.|....  .+.|++..  +.      +.           -..++.+..+  .+...|.+.+|+++
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~e   88 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSE   88 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCC
Confidence            457889999999999876443  46665431  11      10           1234555543  45567999999999


Q ss_pred             CceeEEEEE
Q psy7040         493 DSGIYTLAV  501 (716)
Q Consensus       493 ~~~~y~~~a  501 (716)
                      |...|-|..
T Consensus        89 DtAvYYCAr   97 (117)
T d1um5h1          89 DSAVYYCAR   97 (117)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999954

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=81.30  E-value=0.63  Score=33.88  Aligned_cols=34  Identities=12%  Similarity=-0.047  Sum_probs=27.1

Q ss_pred             CceEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040         173 GMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN  206 (716)
Q Consensus       173 ~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  206 (716)
                      ..++.+........|+|.+++++|++.|.|.+..
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          59 PSRFSGSDSGKDYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             CTTEEEECSSSSEEEEESSCCGGGCSEEEEEECS
T ss_pred             ccccceecCCCeEEeEEcccccccCCcEEEeecc
Confidence            3455555566778999999999999999997653

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=81.20  E-value=3.7  Score=29.62  Aligned_cols=65  Identities=22%  Similarity=0.395  Sum_probs=43.3

Q ss_pred             EEecCCeEEEEEEEeccCCC--eEEEEeCC--eE------e---------cc--CCcEEEEeC--CCeEEEEECCCCCCC
Q psy7040         437 KVRAGSNFEFDINVIGEPIP--TKEWLCND--IT------I---------IS--KDRFKIVND--DKSTKLKVFDSKRGD  493 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~--~~~W~~~~--~~------~---------~~--~~~~~~~~~--~~~~~l~i~~l~~~~  493 (716)
                      .+++|+.+.|.|.+.|....  .+.|++..  +.      +         .+  ..++.+..+  .+...|.+.+|+++|
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eD   90 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSED   90 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCc
Confidence            47789999999999875432  35565421  11      1         01  235555544  355679999999999


Q ss_pred             ceeEEEEE
Q psy7040         494 SGIYTLAV  501 (716)
Q Consensus       494 ~~~y~~~a  501 (716)
                      ...|-|..
T Consensus        91 tAvYYCA~   98 (114)
T d1indh1          91 TALYFCAS   98 (114)
T ss_dssp             CEEEEEEC
T ss_pred             ccEEEECC
Confidence            99999964

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.04  E-value=2  Score=31.18  Aligned_cols=65  Identities=22%  Similarity=0.320  Sum_probs=44.3

Q ss_pred             EEecCCeEEEEEEEeccCCC--eEEEEeC--CeEe--------------c--cCCcEEEEeC--CCeEEEEECCCCCCCc
Q psy7040         437 KVRAGSNFEFDINVIGEPIP--TKEWLCN--DITI--------------I--SKDRFKIVND--DKSTKLKVFDSKRGDS  494 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~--~~~W~~~--~~~~--------------~--~~~~~~~~~~--~~~~~l~i~~l~~~~~  494 (716)
                      .++.|+.+.|.|.+.|....  .+.|.+.  ++.+              .  -..++.+..+  .+...|.+.+|+++|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt   90 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT   90 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence            47889999999999876543  4566543  1111              0  1235555544  3456799999999999


Q ss_pred             eeEEEEE
Q psy7040         495 GIYTLAV  501 (716)
Q Consensus       495 ~~y~~~a  501 (716)
                      ..|-|-.
T Consensus        91 AvYYCAr   97 (117)
T d1c5db1          91 AIYFCTR   97 (117)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEec
Confidence            9999954

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.02  E-value=0.75  Score=33.09  Aligned_cols=61  Identities=10%  Similarity=0.180  Sum_probs=34.7

Q ss_pred             cceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeecc---------cce-e--eEEEEccCCCCCcEEEEEEEEcC
Q psy7040         619 LTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDN---------VDY-F--TKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       619 ~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~---------~~~-~--~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      .+.+.|.+.+.||.-.  .+      .|.|.++|+++....         .+. .  ..|.|..-.-+..-.|+|.+...
T Consensus        20 ~~~~tl~C~v~~f~P~--~i------~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   91 (102)
T d1q0xl2          20 TAKATLVCTITDFYPG--VV------TVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHE   91 (102)
T ss_dssp             TTEEEEEEEEEEEBSS--CC------EEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEET
T ss_pred             CCeEEEEEEEeeeeCC--CC------EEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            4556666665555310  01      799999998776440         111 1  34555433333456799999875


Q ss_pred             C
Q psy7040         687 Q  687 (716)
Q Consensus       687 ~  687 (716)
                      .
T Consensus        92 ~   92 (102)
T d1q0xl2          92 G   92 (102)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.70  E-value=0.47  Score=35.58  Aligned_cols=25  Identities=36%  Similarity=0.388  Sum_probs=21.9

Q ss_pred             CccEEEEeccccCcceEEEEEEEeC
Q psy7040         183 YNTKLGVRMAQRADAGFYTVTAENI  207 (716)
Q Consensus       183 ~~~~l~i~~l~~~~~g~y~c~a~n~  207 (716)
                      .+.+|.|.+|++.|+|.|.|.+...
T Consensus        81 ~~~sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          81 KNCTLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEET
T ss_pred             CEEEEEECCCChHHCEEEEEEEEeC
Confidence            4678999999999999999988643

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=80.69  E-value=3.5  Score=29.91  Aligned_cols=65  Identities=17%  Similarity=0.272  Sum_probs=43.3

Q ss_pred             EEEecCCeEEEEEEEeccCCC--eEEEEeC--CeE------ec-----------cCCcEEEEeC--CCeEEEEECCCCCC
Q psy7040         436 IKVRAGSNFEFDINVIGEPIP--TKEWLCN--DIT------II-----------SKDRFKIVND--DKSTKLKVFDSKRG  492 (716)
Q Consensus       436 ~~~~~g~~~~~~~~v~~~p~~--~~~W~~~--~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~l~~~  492 (716)
                      ..++.|+.+.|.|.+.|....  .+.|.+.  ++.      +.           -..++.+..+  .+...|.+.+|+++
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            457889999999999875432  3556542  110      00           1234555543  35667899999999


Q ss_pred             CceeEEEE
Q psy7040         493 DSGIYTLA  500 (716)
Q Consensus       493 ~~~~y~~~  500 (716)
                      |...|-|-
T Consensus        90 DtAvYYCA   97 (118)
T d1nlbh1          90 DTATYFCA   97 (118)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEEe
Confidence            99999994

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.61  E-value=4.4  Score=28.92  Aligned_cols=72  Identities=14%  Similarity=0.106  Sum_probs=39.1

Q ss_pred             ecCCeEEEEEEEeccCC--CeEEEEeCCeEeccCCcE--EEEeCCC---eEEEEECCCC--CCCceeEEEEEEcCCCcee
Q psy7040         439 RAGSNFEFDINVIGEPI--PTKEWLCNDITIISKDRF--KIVNDDK---STKLKVFDSK--RGDSGIYTLAVKNSWGTDK  509 (716)
Q Consensus       439 ~~g~~~~~~~~v~~~p~--~~~~W~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~l~--~~~~~~y~~~a~n~~g~~~  509 (716)
                      .....+.|.|.+.+.-+  ..+.|.+++.........  ....++.   ...|.|..-+  .+....|+|.+....+...
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~   98 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKE   98 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEE
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEE
Confidence            34566789999987543  469999988655321100  0112221   2245554332  2233479999987765543


Q ss_pred             e
Q psy7040         510 G  510 (716)
Q Consensus       510 ~  510 (716)
                      .
T Consensus        99 ~   99 (105)
T d1dn0b2          99 K   99 (105)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=80.53  E-value=4  Score=29.59  Aligned_cols=66  Identities=15%  Similarity=0.276  Sum_probs=45.0

Q ss_pred             EEecCCeEEEEEEEeccCCC--eEEEEeC--CeEe--------------c--cCCcEEEEeC--CCeEEEEECCCCCCCc
Q psy7040         437 KVRAGSNFEFDINVIGEPIP--TKEWLCN--DITI--------------I--SKDRFKIVND--DKSTKLKVFDSKRGDS  494 (716)
Q Consensus       437 ~~~~g~~~~~~~~v~~~p~~--~~~W~~~--~~~~--------------~--~~~~~~~~~~--~~~~~l~i~~l~~~~~  494 (716)
                      .++.|+.+.|.|.+.|....  .+.|.+.  +..+              .  -..++.+..+  .+...|.|.+|+++|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDt   90 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccc
Confidence            47789999999999876443  4566642  1111              0  1234555543  4567899999999999


Q ss_pred             eeEEEEEE
Q psy7040         495 GIYTLAVK  502 (716)
Q Consensus       495 ~~y~~~a~  502 (716)
                      ..|-|...
T Consensus        91 AvYyCAr~   98 (116)
T d7fabh1          91 AVYYCARN   98 (116)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeeee
Confidence            99999654

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=80.52  E-value=2.9  Score=30.86  Aligned_cols=25  Identities=12%  Similarity=0.179  Sum_probs=21.9

Q ss_pred             eeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040         662 YFTKITIRPLQRSDTAQYTVTATNS  686 (716)
Q Consensus       662 ~~~~~~i~~l~~~~~y~y~~~a~n~  686 (716)
                      +...|.|.++.++|++.|-|.....
T Consensus        73 ~~~~L~i~~~~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          73 NLAVLKILAPSERDEGSYYCACDTL   97 (120)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEECC
T ss_pred             cceecccccccccCCceeecCcccC
Confidence            4479999999999999999987664

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=80.42  E-value=4.5  Score=29.60  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=43.8

Q ss_pred             EecCCeEEEEEEEeccCC----CeEEEEeC--CeEec----------------cCCcEEEEeC--CCeEEEEECCCCCCC
Q psy7040         438 VRAGSNFEFDINVIGEPI----PTKEWLCN--DITII----------------SKDRFKIVND--DKSTKLKVFDSKRGD  493 (716)
Q Consensus       438 ~~~g~~~~~~~~v~~~p~----~~~~W~~~--~~~~~----------------~~~~~~~~~~--~~~~~l~i~~l~~~~  493 (716)
                      +++|+.+.|.|.+.|...    ..+.|++.  +..+.                -..++.+..+  .+...|.|.+|+++|
T Consensus        12 v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eD   91 (120)
T d2agjh1          12 VKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVD   91 (120)
T ss_dssp             CCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGG
T ss_pred             ECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeecc
Confidence            567899999999876432    35778853  21110                0234555543  345679999999999


Q ss_pred             ceeEEEEEE
Q psy7040         494 SGIYTLAVK  502 (716)
Q Consensus       494 ~~~y~~~a~  502 (716)
                      ...|-|...
T Consensus        92 sAvYyCAr~  100 (120)
T d2agjh1          92 TATYYCART  100 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEeeEec
Confidence            999999643

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.38  E-value=0.5  Score=32.99  Aligned_cols=14  Identities=14%  Similarity=0.302  Sum_probs=11.6

Q ss_pred             eEEEEeCCeEeeec
Q psy7040         645 ESQYLMNDKRVTID  658 (716)
Q Consensus       645 ~~~W~~~~~~~~~~  658 (716)
                      .++|.++|+.+..+
T Consensus        33 ~v~W~~~g~~~~~~   46 (89)
T d2mhaa1          33 TLTWQLNGEELIQD   46 (89)
T ss_dssp             EEEEEETTEEECTT
T ss_pred             EEEEEECCEEeCCC
Confidence            78999999887654