Psyllid ID: psy7090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MVVIHRARLIVCHRARDLQYGRRPSLPGPVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Secondary Structure (PSIPRED)
ccEEcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEcccccEEEEEcccccccccccHHHHHccccccccccHHHHHHHHHHHHHcccccEEEccHHcHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHcccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEcccccEEEEEEcHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHccccHHHHHHHHHHHHHHcccccHEEEEHEccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
MVVIHRARLIVCHrardlqygrrpslpgpvvpafslqthqkntitgappkcvpkdktydytSMFRtyysrgdfpiamefksvgnkiswkediktLNYQYYLPIffdglreteypykFFASKGIHDLLengkdkivpvlphlilpiknalstrnpeVICETLKVLQHLVTsssmvgealVPYYKQIlphlnmykdlnkntgdaidysqmkreNIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Flexible Loop (DISEMBL)
mvvihrarlivchrardlqygrrpSLPGPVVPAFSLQTHQkntitgappkcvpkdkTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Low Complexity Region (SEG)
MVVIHRARLIVCHRARDLQYGRRPSLPGPVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Disordered region (IsUnstruct)
**VIHRARLIVCHRARDLQYGRRPSLPGPVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYT**
Disordered Region (DISOPRED)
**********************************************************D*TSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDL***********QMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTV*
Disordered Region (DISEMBL)
MVVIHRARLIVCHRARDLQYGRRPSLPGPVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Disordered Region (DISPRO)
MVVIHRARLIVCHRARD*****************************APPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVIHRARLIVCHRARDLQYGRRPSLPGPVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q9DAK2	241	Parkin coregulated gene p	yes	N/A	0.865	0.908	0.602	1e-76
Q96M98	296	Parkin coregulated gene p	no	N/A	0.865	0.739	0.507	2e-70
Q8N7B6	248	PACRG-like protein OS=Hom	no	N/A	0.656	0.669	0.306	2e-15
Q9D3X5	248	PACRG-like protein OS=Mus	no	N/A	0.656	0.669	0.306	2e-13

>sp|Q9DAK2|PACRG_MOUSE Parkin coregulated gene protein homolog OS=Mus musculus GN=Pacrg PE=1 SV=1

 Score =  286 bits (731), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/219 (60%), Positives = 170/219 (77%)

Query: 30  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 89
           V   F+++   KN++   PP      +     + FR  Y RGDFPIA+E  S GNKI+WK
Sbjct: 22  VSEGFTVKAMMKNSVVRGPPVAGAFKERPAKPTTFRKCYERGDFPIALEHDSKGNKIAWK 81

Query: 90  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 149
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 82  VEIEKLDYHHYLPLFFDGLSEMTFPYEFFARRGIHDMLEHGGNKILPVIPQLIIPIKNAL 141

Query: 150 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMK 209
           + RN ++IC TLKVLQHLV SS MVGEAL+PYY+QILP LN++K++N N+GD IDYSQ K
Sbjct: 142 NLRNRQIICVTLKVLQHLVVSSEMVGEALLPYYRQILPILNIFKNMNVNSGDGIDYSQQK 201

Query: 210 RENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
           RENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct: 202 RENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 240

Suppresses cell death induced by accumulation of unfolded Pael receptor (Pael-R, a substrate of Parkin). Facilitates the formation of inclusions consisting of Pael-R, molecular chaperones, protein degradation molecules and itself when proteasome is inhibited.
Mus musculus (taxid: 10090)

>sp|Q96M98|PACRG_HUMAN Parkin coregulated gene protein OS=Homo sapiens GN=PACRG PE=1 SV=2

 Score =  265 bits (678), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/258 (50%), Positives = 171/258 (66%), Gaps = 39/258 (15%)

Query: 30  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 89
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97

Query: 90  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 149
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PVLP LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNAL 157

Query: 150 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNK------------ 197
           + RN +VIC TLKVLQHLV S+ MVG+ALVPYY+QILP LN++K++N             
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGA 217

Query: 198 ---------------------------NTGDAIDYSQMKRENIGDLVQETLQILERHGGE 230
                                      N+GD IDYSQ KRENIGDL+QETL+  ER+GGE
Sbjct: 218 IMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGE 277

Query: 231 DACIYIKYMIPTYESCIL 248
           +A I IKY++PTYESC+L
Sbjct: 278 NAFINIKYVVPTYESCLL 295

Suppresses cell death induced by accumulation of unfolded Pael receptor (Pael-R, a substrate of Parkin). Facilitates the formation of inclusions consisting of Pael-R, molecular chaperones, protein degradation molecules and itself when proteasome is inhibited. May play an important role in the formation of Lewy bodies and protection of dopaminergic neurons against Parkinson disease.

Homo sapiens (taxid: 9606)

>sp|Q8N7B6|PACRL_HUMAN PACRG-like protein OS=Homo sapiens GN=PACRGL PE=1 SV=2

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 20/186 (10%)

Query: 62  SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASK 121
           S F   YS+G  P  +   SV +++ W+   ++L++   L    +GLRET++PY F + +
Sbjct: 78  SAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEGLRETKHPYTFVSKE 137

Query: 122 GIHDLL--ENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV 179
           G  +LL  +   +K +P+LP LI  +K AL   + EV    L  L  L   S +VG +L 
Sbjct: 138 GFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQL---SVVVGPSLN 194

Query: 180 PYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYM 239
            + K +L  L+                ++  +   + +   LQ LE+HGG  +   IK  
Sbjct: 195 DHLKHLLTSLS---------------KRLMDKKFKEPITSALQKLEQHGGSGSLSIIKSK 239

Query: 240 IPTYES 245
           IPTY S
Sbjct: 240 IPTYCS 245

Homo sapiens (taxid: 9606)

>sp|Q9D3X5|PACRL_MOUSE PACRG-like protein OS=Mus musculus GN=Pacrgl PE=1 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%)

Query: 62  SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASK 121
           + F   YS+G  P  +   SV +++ W+   + L +   L    +GLRET++PY F + +
Sbjct: 78  TAFAAIYSQGGIPCRLVHGSVKHRLQWECPPEILPFDPLLITLAEGLRETKHPYTFVSKE 137

Query: 122 GIHDLL--ENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV 179
           G  +LL  +   +K +P+LP LI  +K AL   + EV    L  L  L   S +VG    
Sbjct: 138 GFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLSALVQL---SVVVG---- 190

Query: 180 PYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYM 239
                  P LN +  L   +       ++  +   + +   LQ LE+HGG  + I IK  
Sbjct: 191 -------PSLNGHLKLLLTS----LSKRLMDKKFKEPITSALQKLEQHGGNASLIIIKSK 239

Query: 240 IPTYES 245
           IPTY S
Sbjct: 240 IPTYCS 245

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
55925315	232	parkin co-regulated gene protein [Danio	0.853	0.931	0.615	5e-77
73946224	257	PREDICTED: parkin coregulated gene prote	0.865	0.852	0.607	1e-75
194227493	257	PREDICTED: parkin coregulated gene prote	0.865	0.852	0.607	1e-75
392334614	257	PREDICTED: parkin coregulated gene prote	0.865	0.852	0.607	2e-75
213514322	230	parkin co-regulated gene protein [Salmo	0.853	0.939	0.606	2e-75
340375228	239	PREDICTED: parkin coregulated gene prote	0.853	0.903	0.629	2e-75
163915233	240	uncharacterized protein LOC100127543 [Xe	0.853	0.9	0.611	2e-75
261289807	221	hypothetical protein BRAFLDRAFT_99083 [B	0.853	0.977	0.611	2e-75
344295111	257	PREDICTED: parkin coregulated gene prote	0.865	0.852	0.607	2e-75
354476606	257	PREDICTED: parkin coregulated gene prote	0.865	0.852	0.607	2e-75

>gi|55925315|ref|NP_001007399.1| parkin co-regulated gene protein [Danio rerio] gi|55250310|gb|AAH85440.1| Zgc:101786 [Danio rerio] gi|182889412|gb|AAI65063.1| Zgc:101786 protein [Danio rerio]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 133/216 (61%), Positives = 174/216 (80%)

Query: 33  AFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDI 92
            F++ +  KN++   PP      +     + FR +Y RGDFPIA+E  S GN+I+WK +I
Sbjct: 16  GFTVMSTMKNSVVVGPPAAGAFRERPAKPTAFRKFYERGDFPIALEHDSKGNRIAWKVEI 75

Query: 93  KTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR 152
           + L+Y +YLP+FFDGL ET +PY+FFA +GIHD+LE+G +K++PV+P LI+PIKNAL+TR
Sbjct: 76  EKLDYHHYLPLFFDGLCETVHPYEFFARQGIHDMLEHGGNKVLPVIPQLIIPIKNALNTR 135

Query: 153 NPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKREN 212
           N +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++NKN+GD IDYSQ KREN
Sbjct: 136 NRQVICTTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMNKNSGDGIDYSQQKREN 195

Query: 213 IGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
           IGDL+QETL++ ER+GGEDA I IKYM+PTYESC+L
Sbjct: 196 IGDLIQETLEVFERYGGEDAFINIKYMVPTYESCLL 231

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|73946224|ref|XP_541188.2| PREDICTED: parkin coregulated gene protein [Canis lupus familiaris]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 133/219 (60%), Positives = 171/219 (78%)

Query: 30  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 89
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97

Query: 90  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 149
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNAL 157

Query: 150 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMK 209
           + RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N N+GD IDYSQ K
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMNVNSGDGIDYSQQK 217

Query: 210 RENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
           RENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct: 218 RENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCVL 256

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194227493|ref|XP_001500429.2| PREDICTED: parkin coregulated gene protein-like [Equus caballus]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 133/219 (60%), Positives = 171/219 (78%)

Query: 30  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 89
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPAAGAFKERPAKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97

Query: 90  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 149
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNAL 157

Query: 150 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMK 209
           + RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N N+GD IDYSQ K
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMNVNSGDGIDYSQQK 217

Query: 210 RENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
           RENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct: 218 RENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 256

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|392334614|ref|XP_003753225.1| PREDICTED: parkin coregulated gene protein-like [Rattus norvegicus] gi|392343690|ref|XP_003748744.1| PREDICTED: parkin coregulated gene protein-like [Rattus norvegicus] gi|149027497|gb|EDL83087.1| similar to PACRG (predicted), isoform CRA_a [Rattus norvegicus]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/219 (60%), Positives = 171/219 (78%)

Query: 30  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 89
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97

Query: 90  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 149
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNAL 157

Query: 150 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMK 209
           + RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N N+GD IDYSQ K
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMNVNSGDGIDYSQQK 217

Query: 210 RENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
           RENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct: 218 RENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 256

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|213514322|ref|NP_001134533.1| parkin co-regulated gene protein [Salmo salar] gi|209734084|gb|ACI67911.1| Parkin coregulated gene protein homolog [Salmo salar]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/216 (60%), Positives = 172/216 (79%)

Query: 33  AFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDI 92
            F++++  KN++   PP      +     + FR +Y RGDFPIA+E  + GN+I+WK +I
Sbjct: 14  GFTVKSTMKNSVVVGPPAAGAFRERPAKPTAFRKFYERGDFPIALEHDTKGNRIAWKVEI 73

Query: 93  KTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR 152
           + L+Y +YLP+FFDGL ET +PY+FFA +G+HD+LE+G  KI+PV+P LI+PIKNAL+TR
Sbjct: 74  EKLDYHHYLPLFFDGLCETVHPYEFFARQGVHDMLEHGGTKILPVIPQLIIPIKNALNTR 133

Query: 153 NPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKREN 212
           N +VIC TLKVLQHLV S  MVGEALVPYY+QILP LN++K++N N+GD IDYSQ KREN
Sbjct: 134 NRQVICTTLKVLQHLVVSGEMVGEALVPYYRQILPILNIFKNMNINSGDGIDYSQQKREN 193

Query: 213 IGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
           IGDL+QETL++ ER+GGEDA I IKYM+PTYESC+L
Sbjct: 194 IGDLIQETLEVFERYGGEDAFINIKYMVPTYESCML 229

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340375228|ref|XP_003386138.1| PREDICTED: parkin coregulated gene protein homolog [Amphimedon queenslandica]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 136/216 (62%), Positives = 170/216 (78%)

Query: 33  AFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDI 92
           AF+++ +  N    +PPK    +      + FR +Y RGDFPIA+E  + GNKI+WK +I
Sbjct: 23  AFTVKAYTGNAKVSSPPKAGALEPRPYKPTDFRKFYDRGDFPIALEHDTKGNKIAWKVEI 82

Query: 93  KTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR 152
           + L+Y +YLP+FFDGL ET +PY+FFA +G+HD+LE+G  KI+PV+P LI+PIKNAL+TR
Sbjct: 83  EKLDYHHYLPLFFDGLCETAHPYEFFARQGVHDMLEHGGKKILPVIPQLIIPIKNALNTR 142

Query: 153 NPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKREN 212
           N +VIC TLK+LQHLV SS +VGEALVPYY+QILP LN+YK  N N+GD IDYSQ KREN
Sbjct: 143 NVKVICTTLKILQHLVISSELVGEALVPYYRQILPILNIYKMKNLNSGDGIDYSQQKREN 202

Query: 213 IGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
           IGDL+QETL+  ERHGGEDA I IKYMIPTYESCIL
Sbjct: 203 IGDLIQETLEAFERHGGEDAFINIKYMIPTYESCIL 238

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|163915233|ref|NP_001106393.1| uncharacterized protein LOC100127543 [Xenopus (Silurana) tropicalis] gi|156230531|gb|AAI52038.1| LOC100127543 protein [Xenopus (Silurana) tropicalis]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/216 (61%), Positives = 169/216 (78%)

Query: 33  AFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDI 92
            F+++   KN+I   PP      +     + FR +Y RGDFPIA+E  + GNKI+WK +I
Sbjct: 24  GFTVKAMMKNSIVRGPPAAGAFKERPAKPTAFRKFYERGDFPIALEHDTKGNKIAWKVEI 83

Query: 93  KTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR 152
           + L+Y +YLP+FFDGL ET +PY+FFA +G+HD+LE+G  KI+PV+P LI+PIKNAL+ R
Sbjct: 84  EKLDYHHYLPLFFDGLCETTHPYEFFARQGVHDMLEHGGPKILPVIPQLIIPIKNALNIR 143

Query: 153 NPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKREN 212
           N +VIC TLKVLQHLV S+ MVGEALVPYY+QILP  N++K++N N+GD IDYSQ KREN
Sbjct: 144 NRQVICTTLKVLQHLVVSADMVGEALVPYYRQILPIFNIFKNVNINSGDGIDYSQQKREN 203

Query: 213 IGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
           IGDL+QETL+  ERHGGEDA I IKYM+PTYESC+L
Sbjct: 204 IGDLIQETLEAFERHGGEDAFINIKYMVPTYESCLL 239

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|261289807|ref|XP_002611765.1| hypothetical protein BRAFLDRAFT_99083 [Branchiostoma floridae] gi|229297137|gb|EEN67775.1| hypothetical protein BRAFLDRAFT_99083 [Branchiostoma floridae]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/216 (61%), Positives = 169/216 (78%)

Query: 33  AFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDI 92
            F+ ++  +N    APP      +     + FR +Y RGDFPIA+E  + GNKI+WK +I
Sbjct: 5   GFTTKSRLRNAKVLAPPNAGAFKERPAKPTAFRKFYERGDFPIALEHDTKGNKIAWKVEI 64

Query: 93  KTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR 152
           + L+Y +YLP+FFDGL ET +PY+FFA +G+HD+LE+G  KI+PV+P LI+PIKNAL+TR
Sbjct: 65  EKLDYHHYLPLFFDGLCETTHPYEFFARQGVHDMLEHGGSKILPVIPQLIIPIKNALNTR 124

Query: 153 NPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKREN 212
           N +V+C TLKVLQHLV S  MVGEALVPYY+QILP LN++K++N N+GD IDYSQ KREN
Sbjct: 125 NRQVVCTTLKVLQHLVVSGEMVGEALVPYYRQILPILNIFKNMNLNSGDGIDYSQQKREN 184

Query: 213 IGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
           IGDL+QETL+  ERHGGEDA I IKYM+PTYESC+L
Sbjct: 185 IGDLIQETLEAFERHGGEDAFINIKYMVPTYESCML 220

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344295111|ref|XP_003419257.1| PREDICTED: parkin coregulated gene protein-like [Loxodonta africana]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/219 (60%), Positives = 171/219 (78%)

Query: 30  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 89
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPTAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97

Query: 90  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 149
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMAFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNAL 157

Query: 150 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMK 209
           + RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N N+GD IDYSQ K
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSADMVGEALVPYYRQILPILNIFKNMNVNSGDGIDYSQQK 217

Query: 210 RENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
           RENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct: 218 RENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 256

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354476606|ref|XP_003500515.1| PREDICTED: parkin coregulated gene protein-like [Cricetulus griseus]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/219 (60%), Positives = 171/219 (78%)

Query: 30  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 89
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97

Query: 90  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 149
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNAL 157

Query: 150 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMK 209
           + RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N N+GD IDYSQ K
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMNVNSGDGIDYSQQK 217

Query: 210 RENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
           RENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct: 218 RENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 256

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
ZFIN|ZDB-GENE-041114-100	236	pacrg "PARK2 co-regulated" [Da	0.849	0.911	0.618	1.2e-72
UNIPROTKB|A5PK71	257	PACRG "Uncharacterized protein	0.861	0.848	0.613	6.1e-71
MGI|MGI:1916560	241	Pacrg "PARK2 co-regulated" [Mu	0.861	0.904	0.609	7.7e-71
RGD|1561027	302	Pacrg "Park2 co-regulated" [Ra	0.806	0.675	0.639	1.4e-69
UNIPROTKB|Q96M98	296	PACRG "Parkin coregulated gene	0.656	0.560	0.571	2.3e-68
UNIPROTKB|F1NWU1	269	F1NWU1 "Uncharacterized protei	0.656	0.617	0.577	2.5e-49
UNIPROTKB|F1LSS4	107	Pacrg "Protein Pacrg" [Rattus	0.418	0.990	0.660	7.2e-36
MGI|MGI:1914018	248	Pacrgl "PARK2 co-regulated-lik	0.640	0.653	0.324	1.4e-14

ZFIN|ZDB-GENE-041114-100 pacrg "PARK2 co-regulated" [Danio rerio (taxid:7955)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 133/215 (61%), Positives = 174/215 (80%)

Query:    34 FSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIK 93
             F++ +  KN++   PP      +     + FR +Y RGDFPIA+E  S GN+I+WK +I+
Sbjct:    21 FTVMSTMKNSVVVGPPAAGAFRERPAKPTAFRKFYERGDFPIALEHDSKGNRIAWKVEIE 80

Query:    94 TLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRN 153
              L+Y +YLP+FFDGL ET +PY+FFA +GIHD+LE+G +K++PV+P LI+PIKNAL+TRN
Sbjct:    81 KLDYHHYLPLFFDGLCETVHPYEFFARQGIHDMLEHGGNKVLPVIPQLIIPIKNALNTRN 140

Query:   154 PEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENI 213
              +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++NKN+GD IDYSQ KRENI
Sbjct:   141 RQVICTTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMNKNSGDGIDYSQQKRENI 200

Query:   214 GDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
             GDL+QETL++ ER+GGEDA I IKYM+PTYESC+L
Sbjct:   201 GDLIQETLEVFERYGGEDAFINIKYMVPTYESCLL 235

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|A5PK71 PACRG "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 135/220 (61%), Positives = 173/220 (78%)

Query:    30 VVPAFSLQTHQKNTITGAPPKCVP-KDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISW 88
             V   F+++   KN++   PP     K++    T+ FR +Y RGDFPIA+E  S GNKI+W
Sbjct:    38 VSEGFTVKAMMKNSVVRGPPSAGAFKERPTKPTA-FRKFYERGDFPIALEHDSKGNKIAW 96

Query:    89 KEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNA 148
             K +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNA
Sbjct:    97 KVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNA 156

Query:   149 LSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQM 208
             L+ RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K+ N N+GD IDYSQ 
Sbjct:   157 LNLRNRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNKNVNSGDGIDYSQQ 216

Query:   209 KRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
             KRENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct:   217 KRENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 256

GO:0097225 "sperm midpiece" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1916560 Pacrg "PARK2 co-regulated" [Mus musculus (taxid:10090)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 134/220 (60%), Positives = 173/220 (78%)

Query:    30 VVPAFSLQTHQKNTITGAPPKCVP-KDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISW 88
             V   F+++   KN++   PP     K++    T+ FR  Y RGDFPIA+E  S GNKI+W
Sbjct:    22 VSEGFTVKAMMKNSVVRGPPVAGAFKERPAKPTT-FRKCYERGDFPIALEHDSKGNKIAW 80

Query:    89 KEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNA 148
             K +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNA
Sbjct:    81 KVEIEKLDYHHYLPLFFDGLSEMTFPYEFFARRGIHDMLEHGGNKILPVIPQLIIPIKNA 140

Query:   149 LSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQM 208
             L+ RN ++IC TLKVLQHLV SS MVGEAL+PYY+QILP LN++K++N N+GD IDYSQ 
Sbjct:   141 LNLRNRQIICVTLKVLQHLVVSSEMVGEALLPYYRQILPILNIFKNMNVNSGDGIDYSQQ 200

Query:   209 KRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
             KRENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct:   201 KRENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 240

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005929 "cilium" evidence=IDA

GO:0007286 "spermatid development" evidence=IGI

GO:0044297 "cell body" evidence=IDA

GO:0097225 "sperm midpiece" evidence=IDA

RGD|1561027 Pacrg "Park2 co-regulated" [Rattus norvegicus (taxid:10116)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 131/205 (63%), Positives = 166/205 (80%)

Query:    44 ITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPI 103
             + G P     K++    T+ FR +Y RGDFPIA+E  S GNKI+WK +I+ L+Y +YLP+
Sbjct:    98 VRGPPAAGAFKERPTKPTA-FRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPL 156

Query:   104 FFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKV 163
             FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL+ RN +VIC TLKV
Sbjct:   157 FFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNALNLRNRQVICVTLKV 216

Query:   164 LQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQI 223
             LQHLV S+ MVGEALVPYY+QILP LN++K++N N+GD IDYSQ KRENIGDL+QETL+ 
Sbjct:   217 LQHLVVSAEMVGEALVPYYRQILPILNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEA 276

Query:   224 LERHGGEDACIYIKYMIPTYESCIL 248
              ER+GGEDA I IKYM+PTYESC+L
Sbjct:   277 FERYGGEDAFINIKYMVPTYESCLL 301

GO:0005739 "mitochondrion" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0007286 "spermatid development" evidence=ISO

GO:0044297 "cell body" evidence=ISO

GO:0097225 "sperm midpiece" evidence=ISO

UNIPROTKB|Q96M98 PACRG "Parkin coregulated gene protein" [Homo sapiens (taxid:9606)]

 Score = 506 (183.2 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
 Identities = 96/168 (57%), Positives = 129/168 (76%)

Query:    30 VVPAFSLQTHQKNTITGAPPKCVP-KDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISW 88
             V   F+++   KN++   PP     K++    T+ FR +Y RGDFPIA+E  S GNKI+W
Sbjct:    38 VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTA-FRKFYERGDFPIALEHDSKGNKIAW 96

Query:    89 KEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNA 148
             K +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PVLP LI+PIKNA
Sbjct:    97 KVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNA 156

Query:   149 LSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 196
             L+ RN +VIC TLKVLQHLV S+ MVG+ALVPYY+QILP LN++K++N
Sbjct:   157 LNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMN 204

GO:0005739 "mitochondrion" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0097225 "sperm midpiece" evidence=IEA

UNIPROTKB|F1NWU1 F1NWU1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 97/168 (57%), Positives = 130/168 (77%)

Query:    30 VVPAFSLQTHQKNTITGAPPKCVP-KDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISW 88
             V   F+++   KNT+   PP     K++    T+ FR +Y RGDFPIA+E  + GN+I+W
Sbjct:    14 VSDGFTVKAMMKNTVVRGPPLAGAFKERPTKPTA-FRKFYERGDFPIAIEHDTKGNRIAW 72

Query:    89 KEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNA 148
             K +I+ L+Y YYLP+FFDGL E  +PY+FFA +GIHD+LE+G++KI+PV+P LI+PIKNA
Sbjct:    73 KVEIEKLDYHYYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGENKILPVIPQLIIPIKNA 132

Query:   149 LSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 196
             LS RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N
Sbjct:   133 LSLRNRQVICITLKVLQHLVVSADMVGEALVPYYRQILPVLNIFKNMN 180

GO:0005739 "mitochondrion" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0097225 "sperm midpiece" evidence=IEA

UNIPROTKB|F1LSS4 Pacrg "Protein Pacrg" [Rattus norvegicus (taxid:10116)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 70/106 (66%), Positives = 92/106 (86%)

Query:    91 DIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALS 150
             +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL+
Sbjct:     2 EIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNALN 61

Query:   151 TRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 196
              RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N
Sbjct:    62 LRNRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMN 107

GO:0005739 "mitochondrion" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0097225 "sperm midpiece" evidence=IEA

MGI|MGI:1914018 Pacrgl "PARK2 co-regulated-like" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 59/182 (32%), Positives = 88/182 (48%)

Query:    64 FRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGI 123
             F   YS+G  P  +   SV +++ W+   + L +   L    +GLRET++PY F + +G 
Sbjct:    80 FAAIYSQGGIPCRLVHGSVKHRLQWECPPEILPFDPLLITLAEGLRETKHPYTFVSKEGF 139

Query:   124 HDLL--ENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPY 181
              +LL  +   +K +P+LP LI  +K AL   + EV    L  L  L   S +VG +L  +
Sbjct:   140 RELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLSALVQL---SVVVGPSLNGH 196

Query:   182 YKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIP 241
              K +L        L+K   D     + K       +   LQ LE+HGG  + I IK  IP
Sbjct:   197 LKLLLT------SLSKRLMD----KKFKEP-----ITSALQKLEQHGGNASLIIIKSKIP 241

Query:   242 TY 243
             TY
Sbjct:   242 TY 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      253       253   0.00083  114 3  11 22  0.43    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  200 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  24.12u 0.09s 24.21t   Elapsed:  00:00:10
  Total cpu time:  24.12u 0.09s 24.21t   Elapsed:  00:00:18
  Start:  Thu Aug 15 12:41:07 2013   End:  Thu Aug 15 12:41:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9DAK2	PACRG_MOUSE	No assigned EC number	0.6027	0.8656	0.9087	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	253
pfam10274	183	pfam10274, ParcG, Parkin co-regulated protein	3e-98

>gnl|CDD|220670 pfam10274, ParcG, Parkin co-regulated protein

 Score =  284 bits (729), Expect = 3e-98
 Identities = 115/185 (62%), Positives = 140/185 (75%), Gaps = 3/185 (1%)

Query: 62  SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASK 121
           + FR  Y RGD P  +   S  NKI WK D + L+Y  YLP FFDGLRET++PY+F A  
Sbjct: 1   TSFRYVYDRGDIPCRINHGSGKNKIQWKVDPEQLDYDPYLPTFFDGLRETKHPYRFVARN 60

Query: 122 GIHDLLEN-GKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVP 180
           GI DLLE  G +KI+PVLP LILP+K AL+TR+PEV C  LKVLQ LV SS ++GEALVP
Sbjct: 61  GIIDLLEAGGGEKILPVLPQLILPLKAALNTRDPEVFCVALKVLQQLVKSSPLIGEALVP 120

Query: 181 YYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMI 240
           YY+Q+LP LN++K+ N N GD IDY   K++NIGDL+QETL++LER+GG DA I IKYMI
Sbjct: 121 YYRQLLPVLNLFKNKNVNLGDRIDY--RKKKNIGDLIQETLELLERNGGPDALINIKYMI 178

Query: 241 PTYES 245
           PTYES
Sbjct: 179 PTYES 183

This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	100.0
KOG3961|consensus	262		100.0
KOG2171|consensus	1075		90.31
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	89.55
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	86.95
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	84.1
KOG2171|consensus	1075		80.55

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=100.00  E-value=2.6e-89  Score=593.88  Aligned_cols=182  Identities=65%  Similarity=1.129  Sum_probs=180.1

Q ss_pred             ChhHHHhhcCCCCEEEeeCCCCCeeeeeecCCCCCCCcchhhhhccccccccchHhHHHhhHHHHHHc-CCCcccccccc
Q psy7090          62 SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLEN-GKDKIVPVLPH  140 (253)
Q Consensus        62 T~Fr~~Y~rGdlP~~i~hgs~~~~L~Wkv~~e~LDy~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~-~~~KilPvlPq  140 (253)
                      |+||++|+||||||+++||+.+++|+|+|++|+||||||||+||||||||+|||+|+|++|++|||++ |++||+|+|||
T Consensus         1 t~Fr~~Y~rG~lP~~i~h~~~~~~l~W~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPq   80 (183)
T PF10274_consen    1 TQFRRFYERGDLPCRIDHGSVKNKLQWKVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQ   80 (183)
T ss_pred             ChHHHHHhcCCCCEEEECCCCCceeEEecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999 88999999999


Q ss_pred             chHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccchhHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHH
Q psy7090         141 LILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQET  220 (253)
Q Consensus       141 LI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eT  220 (253)
                      ||+|||+||||||++|+|++|++||+||+++++||||||||||||||+||+||++|.|+||+|||  ++++|+||+|+||
T Consensus        81 LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y--~~~~~~~dlI~et  158 (183)
T PF10274_consen   81 LIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDY--RKRKNLGDLIQET  158 (183)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCccccc--ccccchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999  6789999999999


Q ss_pred             HHHHHHhCChhHHHHhhhcCCcccc
Q psy7090         221 LQILERHGGEDACIYIKYMIPTYES  245 (253)
Q Consensus       221 L~~LE~~GG~dA~inIKymIPTYeS  245 (253)
                      |++||++||+|||+|||||||||||
T Consensus       159 L~~lE~~GG~dA~~nIKy~IPTYeS  183 (183)
T PF10274_consen  159 LELLERNGGPDAFINIKYMIPTYES  183 (183)
T ss_pred             HHHHHHhcChhHHHHHHHhCCCCCC
Confidence            9999999999999999999999998

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG3961|consensus

Probab=100.00  E-value=1.5e-89  Score=611.11  Aligned_cols=215  Identities=54%  Similarity=0.917  Sum_probs=211.3

Q ss_pred             CccccccccccccC-CCCccCCCCCCCCCCChhHHHhhcCCCCEEEeeCCCCCeeeeeecCCCCCCCcchhhhhcccccc
Q psy7090          33 AFSLQTHQKNTITG-APPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRET  111 (253)
Q Consensus        33 ~ft~~s~~~~~~~~-~p~~~~~f~~~~~~~T~Fr~~Y~rGdlP~~i~hgs~~~~L~Wkv~~e~LDy~~yLPiFfdGLrEt  111 (253)
                      +||.++.++++.+. .||++++|++++..+|+||.+|+||||||+++||+.+++|+|+|+||+|||++|||+|||||+|+
T Consensus        47 p~s~~~~~kr~~v~~~pp~~~~~~~~~~~ps~fr~~~~Rgdlpis~~~~~k~~~l~W~~~pe~Ldy~~yLp~F~dGL~e~  126 (262)
T KOG3961|consen   47 PFSARKLHKRPVVRLGPPTINAFRERPPVPSAFRAIYSRGDLPISLEHGSKGRKLQWECDPEKLDYCPYLPLFFDGLAET  126 (262)
T ss_pred             chhHhhcCCCceeccCCCCCccccccCCCccHHHHHHccCCCceecccCCCCCccccccCHHhccchHHHHHHhhhhhhc
Confidence            59999999999988 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccchhHHHhhchhhhh
Q psy7090         112 EYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNM  191 (253)
Q Consensus       112 ~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~lnl  191 (253)
                      +|||+|+|+||+.|||.++++||+|||||||.|||+||+|||.||+|.+||+||+||.++++||+|||||||||||+||+
T Consensus       127 ~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n~  206 (262)
T KOG3961|consen  127 DHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVLNT  206 (262)
T ss_pred             CCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHHHHhhhcCCcccceeec
Q psy7090         192 YKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILR  249 (253)
Q Consensus       192 fk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~inIKymIPTYeSc~~~  249 (253)
                      ||++|+|.||+|||  +|+.||||+|+|||+.||++||++|||||||||||||||.+|
T Consensus       207 ~k~~n~n~gd~idy--dk~~~igdlI~dTL~~LE~~GGpnAfINIKY~vPtYESC~~~  262 (262)
T KOG3961|consen  207 FKNSNVNRGDGIDY--DKNRNIGDLINDTLKHLERSGGPNAFINIKYMVPTYESCCLN  262 (262)
T ss_pred             hcccccccccccCc--cccccHHHHHHHHHHHHHHcCCccceeeEeeccCcchhhcCC
Confidence            99999999999999  478999999999999999999999999999999999999875

>KOG2171|consensus

Probab=90.31  E-value=0.33  Score=52.83  Aligned_cols=121  Identities=18%  Similarity=0.309  Sum_probs=86.4

Q ss_pred             hhhhccccccccchHhH-HHhhHHHHHH-cCCCccccccccchH-HHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q psy7090         102 PIFFDGLRETEYPYKFF-ASKGIHDLLE-NGKDKIVPVLPHLIL-PIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL  178 (253)
Q Consensus       102 PiFfdGLrEt~~PY~Fl-A~~G~~dLL~-~~~~KilPvlPqLI~-PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~AL  178 (253)
                      |....=+--+++|=.-- |--..-.+.+ ..++.|-|.||.|.- =++.+++.+.+.|-+.++-+|   ...++..+++.
T Consensus       434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaI---asvA~AA~~~F  510 (1075)
T KOG2171|consen  434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAI---ASVADAAQEKF  510 (1075)
T ss_pred             HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH---HHHHHHHhhhh
Confidence            35555555666653211 1222233334 467899999999999 788999999999998887655   55567789999


Q ss_pred             hhHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHHH
Q psy7090         179 VPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACI  234 (253)
Q Consensus       179 vPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~i  234 (253)
                      +|||..++|.|.-|...   .+|      .-.+.++--..|++.++.+..|+++|.
T Consensus       511 ~pY~d~~Mp~L~~~L~n---~~~------~d~r~LrgktmEcisli~~AVGke~F~  557 (1075)
T KOG2171|consen  511 IPYFDRLMPLLKNFLQN---ADD------KDLRELRGKTMECLSLIARAVGKEKFL  557 (1075)
T ss_pred             HhHHHHHHHHHHHHHhC---CCc------hhhHHHHhhHHHHHHHHHHHhhhhhhh
Confidence            99999999998765542   221      123455666789999999999999875

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=89.55  E-value=0.37  Score=46.18  Aligned_cols=98  Identities=22%  Similarity=0.429  Sum_probs=77.3

Q ss_pred             eeeeeecCCCCCCCcchhhhhccccccccchHhHHHhhHHHHHHcCC-CccccccccchHHHHHhhcCCCHHHHHHHHHH
Q psy7090          85 KISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGK-DKIVPVLPHLILPIKNALSTRNPEVICETLKV  163 (253)
Q Consensus        85 ~L~Wkv~~e~LDy~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~-~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~  163 (253)
                      ++=||.-.    |...+|.+.+|.+++...=+-..-.++--+|++-+ +-++|-+|+|++=+=.||+..|+++...+|++
T Consensus       313 klLykQR~----F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~t  388 (415)
T PF12460_consen  313 KLLYKQRF----FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLET  388 (415)
T ss_pred             hhHHhHHH----HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45555433    66789999999999876422222556777777755 68889999999999999999999999999999


Q ss_pred             HHHHHhcCCcccccchhHHHhhchhh
Q psy7090         164 LQHLVTSSSMVGEALVPYYKQILPHL  189 (253)
Q Consensus       164 Lq~Lv~~~~~VG~ALvPyyRqlLP~l  189 (253)
                      |..++..+   -+++-+|...|.|.|
T Consensus       389 L~~~l~~~---~~~i~~hl~sLI~~L  411 (415)
T PF12460_consen  389 LKMILEEA---PELISEHLSSLIPRL  411 (415)
T ss_pred             HHHHHHcC---HHHHHHHHHHHHHHH
Confidence            99998776   667777888888764

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=86.95  E-value=0.85  Score=39.15  Aligned_cols=105  Identities=24%  Similarity=0.375  Sum_probs=69.0

Q ss_pred             cccccchH--hHHHhhHHHHHHcC-----CCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccchhH
Q psy7090         109 RETEYPYK--FFASKGIHDLLENG-----KDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPY  181 (253)
Q Consensus       109 rEt~~PY~--FlA~~G~~dLL~~~-----~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPy  181 (253)
                      +|+++-+.  .=|.+-++.++..+     .+.+++.+.+++..|-..++..+-.|...++..|+.|+   ...|..+-||
T Consensus        15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~---~~l~~~~~~~   91 (228)
T PF12348_consen   15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLA---RQLGSHFEPY   91 (228)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHH---HHHGGGGHHH
T ss_pred             cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHhHhHHHH
Confidence            67766663  33455555666555     35777788888889999999999999999999998886   5678899999


Q ss_pred             HHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCC
Q psy7090         182 YKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGG  229 (253)
Q Consensus       182 yRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG  229 (253)
                      ..+++|.|  ++..    ||       ..+.+.+...++|..+-++.+
T Consensus        92 ~~~~l~~L--l~~~----~~-------~~~~i~~~a~~~L~~i~~~~~  126 (228)
T PF12348_consen   92 ADILLPPL--LKKL----GD-------SKKFIREAANNALDAIIESCS  126 (228)
T ss_dssp             HHHHHHHH--HHGG----G----------HHHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHH--HHHH----cc-------ccHHHHHHHHHHHHHHHHHCC
Confidence            99999974  3322    22       235688889999988888777

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=84.10  E-value=1.4  Score=35.27  Aligned_cols=69  Identities=26%  Similarity=0.368  Sum_probs=52.9

Q ss_pred             chHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccchhHHHhhc
Q psy7090         114 PYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQIL  186 (253)
Q Consensus       114 PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlL  186 (253)
                      +.+--|.+|+.+|++.+++-|-++.||+..=|++||...  +.=..++++...+++.=+.  +.|.|..-|+.
T Consensus        30 ~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~--~~l~~ll~~~~   98 (107)
T PF08064_consen   30 PEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDE--EDLGPLLDQIF   98 (107)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCH--HHHHHHHHHHH
Confidence            345668899999999999999999999999999999966  6666677777777765332  55555555443

; GO: 0004674 protein serine/threonine kinase activity

>KOG2171|consensus

Probab=80.55  E-value=6.2  Score=43.42  Aligned_cols=113  Identities=20%  Similarity=0.274  Sum_probs=88.1

Q ss_pred             chhhhhccccccccchHhHHHhhHHHHHHcC------CCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCc
Q psy7090         100 YLPIFFDGLRETEYPYKFFASKGIHDLLENG------KDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSM  173 (253)
Q Consensus       100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~------~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~  173 (253)
                      ++++|..|+.+-.+|-++.|.+++--+...-      ..|.-++||.++.-+..-++..|.++-+.+|++|--|+   +.
T Consensus       160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~---e~  236 (1075)
T KOG2171|consen  160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL---ES  236 (1075)
T ss_pred             HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH---hh
Confidence            8899999999999999999999887776432      26888999999999999999999999999999998886   44


Q ss_pred             ccccchhHHHhhchhh-hhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHh
Q psy7090         174 VGEALVPYYKQILPHL-NMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERH  227 (253)
Q Consensus       174 VG~ALvPyyRqlLP~l-nlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~  227 (253)
                      .++-|-||+-+++... -+.+|+  .++          ..++-++-|.|-.|-++
T Consensus       237 ~pk~l~~~l~~ii~~~l~Ia~n~--~l~----------~~~R~~ALe~ivs~~e~  279 (1075)
T KOG2171|consen  237 EPKLLRPHLSQIIQFSLEIAKNK--ELE----------NSIRHLALEFLVSLSEY  279 (1075)
T ss_pred             chHHHHHHHHHHHHHHHHHhhcc--ccc----------HHHHHHHHHHHHHHHHh
Confidence            5788999999999763 344433  332          34444555555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 31/210 (14%)

Query: 49  PKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK--EDIKTLNYQYYLPIFFD 106
           PK +   +  D+  M +   S           S   ++  K  E++  +NY++ +     
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 107 GLRETEYPYKFFASKGIHDLLENGKDKIVP---VLPHLILPIKNALSTRNPE--VI---- 157
             R+     + +  +   D L N                L ++ AL    P   V+    
Sbjct: 101 EQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 158 ------CETLKVLQHLVTSSSM--------VGEALVPYYKQILPHL-NMYKDLNKNTGDA 202
                    L V         M        +     P  + +L  L  +   ++ N    
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP--ETVLEMLQKLLYQIDPNWTSR 216

Query: 203 IDYSQMKRENIGDLVQETLQILERHGGEDA 232
            D+S   +  I  +  E  ++L+    E+ 
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.8
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.78
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.13
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	94.99
1qgr_A	876	Protein (importin beta subunit); transport recepto	94.4
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	94.39
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	94.02
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	93.56
1qgr_A	876	Protein (importin beta subunit); transport recepto	93.06
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	93.04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	92.99
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	92.92
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	91.57
2x19_B	963	Importin-13; nuclear transport, protein transport;	87.66
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	82.87
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	80.36
2x1g_F	971	Cadmus; transport protein, developmental protein,	80.19
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	80.11

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.80  E-value=0.0029  Score=52.87  Aligned_cols=113  Identities=16%  Similarity=0.214  Sum_probs=84.9

Q ss_pred             cchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhc-CCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7090          99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALS-TRNPEVICETLKVLQHLVTSSSMVGEA  177 (253)
Q Consensus        99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~-trd~~V~~~~L~~Lq~Lv~~~~~VG~A  177 (253)
                      .+.|-|++++..++--+|.-|...+..+++..+.-.-.-+.+++..|+..|. ..|..|...++++|..|+.   ..|+.
T Consensus        15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~---~l~~~   91 (242)
T 2qk2_A           15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK---GLAKR   91 (242)
T ss_dssp             GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH---HHGGG
T ss_pred             cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH---HHhhh
Confidence            3556799999988888999999999999987443233556788999999995 8999999999999999974   56889


Q ss_pred             chhHHHhhchhhh-hhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhC
Q psy7090         178 LVPYYKQILPHLN-MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHG  228 (253)
Q Consensus       178 LvPyyRqlLP~ln-lfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~G  228 (253)
                      +-||..+++|.+- .++++              +..+++-..++|..+-...
T Consensus        92 ~~~~~~~ilp~ll~~l~d~--------------~~~vr~~a~~aL~~~~~~~  129 (242)
T 2qk2_A           92 FSNYASACVPSLLEKFKEK--------------KPNVVTALREAIDAIYAST  129 (242)
T ss_dssp             GHHHHHHHHHHHHHGGGCC--------------CHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHcCC--------------CHHHHHHHHHHHHHHHHcC
Confidence            9999999999854 22322              2345555556555554443

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.0047  Score=53.42  Aligned_cols=120  Identities=13%  Similarity=0.159  Sum_probs=92.5

Q ss_pred             chhhhhccccccccchHhHHHhhHHHHHHcCCCccccc--cccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7090         100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPV--LPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA  177 (253)
Q Consensus       100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPv--lPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~A  177 (253)
                      +||..+|-+.|.+..-+--|...+..+.+.-.. +.+.  ++.++..|-.+|+++++.+-..+|..|..++..+...-..
T Consensus       105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~  183 (249)
T 2qk1_A          105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYST  183 (249)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchh
Confidence            578888888888765555555555556665433 4444  8899999999999999999999999999998776544467


Q ss_pred             chhHH-HhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHH
Q psy7090         178 LVPYY-KQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDAC  233 (253)
Q Consensus       178 LvPyy-RqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~  233 (253)
                      +.+|+ .+|+|.+.-+-+      |       ....+++.-.++|..+-+.-|++.+
T Consensus       184 l~~~l~~~iip~l~~~l~------D-------~~~~VR~aA~~~l~~i~~~vG~~~~  227 (249)
T 2qk1_A          184 LQRYLKDEVVPIVIQIVN------D-------TQPAIRTIGFESFAILIKIFGMNTF  227 (249)
T ss_dssp             HHHHHTTTHHHHHHHHHT------C-------SSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred             HHHHHHHHHHHHHHHHhc------C-------CCHHHHHHHHHHHHHHHHHhCHHHH
Confidence            99999 999999774332      1       2467899999999999999998754

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.13  E-value=0.026  Score=47.00  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=87.4

Q ss_pred             chhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccch
Q psy7090         100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV  179 (253)
Q Consensus       100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALv  179 (253)
                      ++|.+++.+.+++..-+--|...+..+.+..+      +.+++..|..+|.++|+.|-..++..|..++.... -.....
T Consensus        99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~-~~~~~~  171 (242)
T 2qk2_A           99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ-PTALNK  171 (242)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC-GGGCCH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC-CCCccH
Confidence            67888888888887777777888888776432      46788889999999999999999999988764431 012457


Q ss_pred             hHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHH
Q psy7090         180 PYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDAC  233 (253)
Q Consensus       180 PyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~  233 (253)
                      +|+.+++|.+--.-+      |       ....+++...++|..|-+.=|++.+
T Consensus       172 ~~l~~l~p~l~~~l~------D-------~~~~VR~~A~~~l~~l~~~vg~~~~  212 (242)
T 2qk2_A          172 KLLKLLTTSLVKTLN------E-------PDPTVRDSSAEALGTLIKLMGDKAV  212 (242)
T ss_dssp             HHHHHHHHHHHHHHT------S-------SCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHhc------C-------CChHHHHHHHHHHHHHHHHcCHHHH
Confidence            899999998664331      1       2467889999999999999898764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=94.99  E-value=0.05  Score=51.98  Aligned_cols=123  Identities=16%  Similarity=0.273  Sum_probs=85.0

Q ss_pred             chhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCC--HHHHHHHHHHHHHHHhcCCccccc
Q psy7090         100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRN--PEVICETLKVLQHLVTSSSMVGEA  177 (253)
Q Consensus       100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd--~~V~~~~L~~Lq~Lv~~~~~VG~A  177 (253)
                      ++|.++++|...+..-+.-|...+.++.+..++.+.|.++.++..+-..|.+.+  +++-..++.+|..++..   .|+.
T Consensus       640 i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~---~~~~  716 (861)
T 2bpt_A          640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN---IGAD  716 (861)
T ss_dssp             HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH---HGGG
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH---hhhh
Confidence            455666777544455566677777888888788999999999999999998865  88999999999888654   5899


Q ss_pred             chhHHHhhchhhhhhhcccCCCCc--ccccchhcccchhHHHHHHHHHHHHhCC
Q psy7090         178 LVPYYKQILPHLNMYKDLNKNTGD--AIDYSQMKRENIGDLVQETLQILERHGG  229 (253)
Q Consensus       178 LvPyyRqlLP~lnlfk~~n~n~gD--~idy~q~~~~~lgdlI~eTL~~LE~~GG  229 (253)
                      +.||+-+++|.+--..+.....+|  ..||.    .+++.-+.+++..+-+..|
T Consensus       717 ~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~----~~vr~~~l~~~~~i~~~l~  766 (861)
T 2bpt_A          717 FIPYLNDIMALCVAAQNTKPENGTLEALDYQ----IKVLEAVLDAYVGIVAGLH  766 (861)
T ss_dssp             GHHHHHHHHHHHHHHHTCCCSSSSHHHHHHH----HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCChHHHHHH----HHHHHHHHHHHHHHHHHHc
Confidence            999999999986543322111111  11221    2345555566665555444

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=94.40  E-value=0.092  Score=50.24  Aligned_cols=124  Identities=15%  Similarity=0.166  Sum_probs=84.6

Q ss_pred             chhhhhccccccccchHhHHHhhHHHHHHcCCCc--cccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC-----
Q psy7090         100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDK--IVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSS-----  172 (253)
Q Consensus       100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~K--ilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~-----  172 (253)
                      .+|.++.+|.+.....+.-|-..+..+.+..+..  .-|.+++++..|-.+|+. ++.|-..++.+|..++....     
T Consensus       409 ~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~  487 (876)
T 1qgr_A          409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADV  487 (876)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhcccc
Confidence            5777888887655555666777777777654433  347888999999999987 48888888999988876532     


Q ss_pred             ------cccccchhHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHHH
Q psy7090         173 ------MVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACI  234 (253)
Q Consensus       173 ------~VG~ALvPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~i  234 (253)
                            ..++.+.||+.+++|.|--..+...  .        ...+++..+.|+|..+-+..|.+...
T Consensus       488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~--~--------~~~~~r~~~~~~l~~l~~~~~~~~~~  545 (876)
T 1qgr_A          488 ADDQEEPATYCLSSSFELIVQKLLETTDRPD--G--------HQNNLRSSAYESLMEIVKNSAKDCYP  545 (876)
T ss_dssp             TTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS--S--------CSTTHHHHHHHHHHHHHHTCCSTTHH
T ss_pred             ccccccccchhhhHhHHHHHHHHHHHHhCcC--c--------chhhHHHHHHHHHHHHHHHCchhhHH
Confidence                  2346799999999998754332210  0        12355566677777777777665443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=94.39  E-value=0.038  Score=54.07  Aligned_cols=132  Identities=11%  Similarity=0.153  Sum_probs=91.1

Q ss_pred             cchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q psy7090          99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL  178 (253)
Q Consensus        99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~AL  178 (253)
                      .+++++++.+......-+--|..-+.++....++.+.|.++++++.+-++|+..++++-..+..++-.++.   .+|+.+
T Consensus       629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~---~~~~~~  705 (852)
T 4fdd_A          629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISI---QMGIEM  705 (852)
T ss_dssp             CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHH---HHGGGG
T ss_pred             cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHH---HhhHhH
Confidence            56777777775544334445555566666677889999999999999999999999999989888888864   458899


Q ss_pred             hhHHHhhchhhh-hhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHHHHhhhcCCcccc
Q psy7090         179 VPYYKQILPHLN-MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYES  245 (253)
Q Consensus       179 vPyyRqlLP~ln-lfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~inIKymIPTYeS  245 (253)
                      -||+.++++.|- ++++.+            -.+++.|-.-.|+..|-+.++...-..+-..+|++..
T Consensus       706 ~p~~~~il~~L~~~l~~~~------------~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~  761 (852)
T 4fdd_A          706 QPYIPMVLHQLVEIINRPN------------TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCT  761 (852)
T ss_dssp             GGGTHHHHHHHHHHHTCSS------------CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCC------------CCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHH
Confidence            999999999854 332211            1245666677777777777443222234444444443

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=94.02  E-value=0.17  Score=43.58  Aligned_cols=108  Identities=10%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             hhhccccccccchHhHHHhhHHH-HHHcCCCcccc---ccccchHHHHHhh-cCCCHHHHHHHHHHHHHHHhcCCccc-c
Q psy7090         103 IFFDGLRETEYPYKFFASKGIHD-LLENGKDKIVP---VLPHLILPIKNAL-STRNPEVICETLKVLQHLVTSSSMVG-E  176 (253)
Q Consensus       103 iFfdGLrEt~~PY~FlA~~G~~d-LL~~~~~KilP---vlPqLI~PiK~AL-~trd~~V~~~~L~~Lq~Lv~~~~~VG-~  176 (253)
                      -|.+.+..++=--|-=|.+.+.. +++ +..++.+   =...++.-|+..| +-.|..|...++++|.+|+   ...+ +
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~-~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la---~~l~~~   95 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLS-QTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELIC---DKLKTP   95 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGG-GCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH---HHHCTT
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHh-cCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH---Hhcccc
Confidence            46666655444444334444444 443 2345553   2358899999999 7889999999999999996   5567 8


Q ss_pred             cch-hHHHhhchh-hhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhC
Q psy7090         177 ALV-PYYKQILPH-LNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHG  228 (253)
Q Consensus       177 ALv-PyyRqlLP~-lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~G  228 (253)
                      ..- ||...+||. +..++++              ..++.+-+.++|..+-.+-
T Consensus        96 ~f~~~y~~~llp~ll~~l~dk--------------k~~V~~aa~~al~~i~~~~  135 (249)
T 2qk1_A           96 GFSKDYVSLVFTPLLDRTKEK--------------KPSVIEAIRKALLTICKYY  135 (249)
T ss_dssp             TSCHHHHHHHHHHHHHGGGCC--------------CHHHHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHHHHHHcCC--------------CHHHHHHHHHHHHHHHHHc
Confidence            898 999999987 4455543              3456677777777666655

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=93.56  E-value=0.11  Score=49.69  Aligned_cols=121  Identities=13%  Similarity=0.102  Sum_probs=80.1

Q ss_pred             CCCcchhhhhcc----cccccc-chHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7090          96 NYQYYLPIFFDG----LRETEY-PYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS  170 (253)
Q Consensus        96 Dy~~yLPiFfdG----LrEt~~-PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~  170 (253)
                      ++.+|++.+++.    +..... ..+--+...+.-+....++.+.|.+|+++..|...|++.++++-..++.++..++. 
T Consensus       590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~-  668 (861)
T 2bpt_A          590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN-  668 (861)
T ss_dssp             GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-
Confidence            445555554443    433322 23333444555566666778899999999999999999999999999999988875 


Q ss_pred             CCcccccchhHHHhhchhhh-hhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChh
Q psy7090         171 SSMVGEALVPYYKQILPHLN-MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGED  231 (253)
Q Consensus       171 ~~~VG~ALvPyyRqlLP~ln-lfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~d  231 (253)
                        .+|+.+.||..+++|.+- .+.+.+      .      +..++..+..+|..+-++.|++
T Consensus       669 --~~~~~~~~~~~~l~~~l~~~l~~~~------~------~~~vr~~~~~~l~~l~~~~~~~  716 (861)
T 2bpt_A          669 --SLEEDFRRYSDAMMNVLAQMISNPN------A------RRELKPAVLSVFGDIASNIGAD  716 (861)
T ss_dssp             --HTGGGGHHHHHHHHHHHHHHHHCTT------C------CTTHHHHHHHHHHHHHHHHGGG
T ss_pred             --HhchhccchHHHHHHHHHHHhCCcc------c------cHhhhHHHHHHHHHHHHHhhhh
Confidence              458899999999999853 222110      1      1234555555565555555554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=93.06  E-value=0.06  Score=51.53  Aligned_cols=88  Identities=20%  Similarity=0.309  Sum_probs=69.2

Q ss_pred             chhhhhcccccc-ccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCcccc
Q psy7090         100 YLPIFFDGLRET-EYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMVGE  176 (253)
Q Consensus       100 yLPiFfdGLrEt-~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~t--rd~~V~~~~L~~Lq~Lv~~~~~VG~  176 (253)
                      ++|.+..+|... ...-+.-|...+.++....++.+.|.+++++..|-..|++  .+.++...++.++..++.   ..|+
T Consensus       650 ~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~---~~g~  726 (876)
T 1qgr_A          650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL---AIGG  726 (876)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH---HHGG
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH---Hhch
Confidence            456666777765 3344566777778888777788999999999999999987  467888888888888754   4588


Q ss_pred             cchhHHHhhchhhh
Q psy7090         177 ALVPYYKQILPHLN  190 (253)
Q Consensus       177 ALvPyyRqlLP~ln  190 (253)
                      .+.||+.+++|.+.
T Consensus       727 ~~~~~l~~~~~~l~  740 (876)
T 1qgr_A          727 EFKKYLEVVLNTLQ  740 (876)
T ss_dssp             GGGGGHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            89999999999865

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=93.04  E-value=0.095  Score=53.43  Aligned_cols=91  Identities=10%  Similarity=0.093  Sum_probs=78.0

Q ss_pred             CCcchhhhhcccccccc-chHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccc
Q psy7090          97 YQYYLPIFFDGLRETEY-PYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVG  175 (253)
Q Consensus        97 y~~yLPiFfdGLrEt~~-PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG  175 (253)
                      |++++|.+.++|..... ..+--|.+++-.+....+.++.|.+++++..+..+++..+++|=..+++.+..++.   ..|
T Consensus       211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~---~~~  287 (1230)
T 1u6g_C          211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR---RCP  287 (1230)
T ss_dssp             CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH---CTT
T ss_pred             HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HCh
Confidence            77889999999977643 45566788888888887889999999999999999999999998899999988875   468


Q ss_pred             ccchhHHHhhchhhh
Q psy7090         176 EALVPYYKQILPHLN  190 (253)
Q Consensus       176 ~ALvPyyRqlLP~ln  190 (253)
                      +.+.||..+++|.+-
T Consensus       288 ~~~~~~l~~li~~ll  302 (1230)
T 1u6g_C          288 KEVYPHVSTIINICL  302 (1230)
T ss_dssp             CCCHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHHHHHH
Confidence            899999999999864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=92.99  E-value=0.28  Score=50.07  Aligned_cols=121  Identities=17%  Similarity=0.186  Sum_probs=81.7

Q ss_pred             cchhhhhcccccccc--chHhHHHhhHHHHHHc-CCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc-CC--
Q psy7090          99 YYLPIFFDGLRETEY--PYKFFASKGIHDLLEN-GKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS-SS--  172 (253)
Q Consensus        99 ~yLPiFfdGLrEt~~--PY~FlA~~G~~dLL~~-~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~-~~--  172 (253)
                      .++|.+.+.|.+...  --+.=|-..+..+++. +++.+.|.+++++..|-.+++.+++.|-..++.++..++.. ++  
T Consensus       475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~  554 (1230)
T 1u6g_C          475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLD  554 (1230)
T ss_dssp             HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcc
Confidence            456666777765543  1222233344445553 55668899999999999999999999988888888888743 22  


Q ss_pred             -cccccchhHHHhhchhhh-hhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChh
Q psy7090         173 -MVGEALVPYYKQILPHLN-MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGED  231 (253)
Q Consensus       173 -~VG~ALvPyyRqlLP~ln-lfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~d  231 (253)
                       ..+..+.||+.+|+|.+- .+.+.     |       ....+++...++|..|-.++|++
T Consensus       555 ~~~~~~~~~~~~~ll~~ll~~l~~~-----d-------~~~~vr~~a~~~lg~L~~~~g~~  603 (1230)
T 1u6g_C          555 QPSSFDATPYIKDLFTCTIKRLKAA-----D-------IDQEVKERAISCMGQIICNLGDN  603 (1230)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHHHSCS-----S-------SCHHHHHHHHHHHHHHHHHTGGG
T ss_pred             cccccchHHHHHHHHHHHHHHHhcc-----C-------CCHHHHHHHHHHHHHHHHHhCch
Confidence             234589999999999853 33211     1       12356666778888888888865

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=92.92  E-value=0.032  Score=54.63  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=75.3

Q ss_pred             CCcchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7090          97 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE  176 (253)
Q Consensus        97 y~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~  176 (253)
                      ++..+|.++++|.+....-+--|-..+..+.+..+..+.|.+|+++..|..+|+..+.+....+++++..++   +.+|+
T Consensus       440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~---~~~~~  516 (852)
T 4fdd_A          440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA---DSVGH  516 (852)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---HHHGG
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH---HHhhh
Confidence            345778888888887777777788888888888778899999999999999999998888888888888886   44677


Q ss_pred             cch--hHHHhhchhhh
Q psy7090         177 ALV--PYYKQILPHLN  190 (253)
Q Consensus       177 ALv--PyyRqlLP~ln  190 (253)
                      .+.  +||.+++|.+.
T Consensus       517 ~~~~~~~~~~l~p~l~  532 (852)
T 4fdd_A          517 HLNKPEYIQMLMPPLI  532 (852)
T ss_dssp             GGCCHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHH
Confidence            774  59999999864

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=91.57  E-value=0.16  Score=44.45  Aligned_cols=88  Identities=15%  Similarity=0.232  Sum_probs=63.8

Q ss_pred             cchhhhhccccccccchHhHHHhhHHHHHHcCC-CccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7090          99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGK-DKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA  177 (253)
Q Consensus        99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~-~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~A  177 (253)
                      ..+|.+.+.|.+.+--.+.-|...+-.+.+... +.+-+.+++++..|-.+|+..++.|-.++..+|..++   +..|+.
T Consensus       366 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~---~~~~~~  442 (462)
T 1ibr_B          366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEA  442 (462)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH---HHGGGG
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---Hhcccc
Confidence            355666667766554455555555555555333 4567889999999999999999999999999999886   445666


Q ss_pred             c--hhHHHhhchhh
Q psy7090         178 L--VPYYKQILPHL  189 (253)
Q Consensus       178 L--vPyyRqlLP~l  189 (253)
                      +  -+|+.+++|.|
T Consensus       443 ~~~~~~l~~ll~~L  456 (462)
T 1ibr_B          443 AINDVYLAPLLQCL  456 (462)
T ss_dssp             CCSTTTHHHHHHHH
T ss_pred             cccHHHHHHHHHHH
Confidence            5  37888888864

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=87.66  E-value=0.81  Score=45.12  Aligned_cols=89  Identities=10%  Similarity=0.173  Sum_probs=70.4

Q ss_pred             CcchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCCccc
Q psy7090          98 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR--NPEVICETLKVLQHLVTSSSMVG  175 (253)
Q Consensus        98 ~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~tr--d~~V~~~~L~~Lq~Lv~~~~~VG  175 (253)
                      ...|+.+++||.+  ..-+--|-..+..+.+..++.+.|.+++++.-+..+++..  +.+.....++++..++...+  .
T Consensus       528 ~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~--~  603 (963)
T 2x19_B          528 NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ--V  603 (963)
T ss_dssp             TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC--H
T ss_pred             HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC--H
Confidence            4577888888866  4555666677788888888889999999999999999863  56788888888888875433  4


Q ss_pred             ccchhHHHhhchhhh
Q psy7090         176 EALVPYYKQILPHLN  190 (253)
Q Consensus       176 ~ALvPyyRqlLP~ln  190 (253)
                      +...||+.++++++.
T Consensus       604 ~~~~~~~~~l~~~l~  618 (963)
T 2x19_B          604 EEILKNLHSLISPYI  618 (963)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            788999999998865

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=82.87  E-value=11  Score=32.79  Aligned_cols=126  Identities=10%  Similarity=0.073  Sum_probs=77.4

Q ss_pred             chhhhhccccccccchHhHHHhhHHHHHHcCCCccccccc-cchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC-------
Q psy7090         100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLP-HLILPIKNALSTRNPEVICETLKVLQHLVTSS-------  171 (253)
Q Consensus       100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlP-qLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~-------  171 (253)
                      .++.+.+.+...+...+--|.+.+.++.+..++.+-|.++ .++..+-..+...+++|...+++.+..++...       
T Consensus       218 l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~  297 (462)
T 1ibr_B          218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA  297 (462)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3666666554444444455666777777777788889999 89888888999999999999999888886542       


Q ss_pred             -----------CcccccchhHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChh
Q psy7090         172 -----------SMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGED  231 (253)
Q Consensus       172 -----------~~VG~ALvPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~d  231 (253)
                                 .....-.-+|..+++|.+-  +..... .+.. ..  ...+++....++|..|-..-|++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~--~~l~~~-d~d~-~~--~~~~~r~~a~~~L~~l~~~~~~~  362 (462)
T 1ibr_B          298 SEAAEQGRPPEHTSKFYAKGALQYLVPILT--QTLTKQ-DEND-DD--DDWNPCKAAGVCLMLLATCCEDD  362 (462)
T ss_dssp             CCTTCSSSCSSCCCCCHHHHHHHHHHHHHH--HHTTCC-CSSC-CT--TCCSHHHHHHHHHHHHHHHTTTT
T ss_pred             ccccccCCCccchhHHHHHHHhhhccHHHH--HHHHhc-cccc-cc--ccchHHHHHHHHHHHHHHhccHH
Confidence                       1112223357788888752  211110 0000 00  12245555666666666555543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=80.36  E-value=3.6  Score=41.17  Aligned_cols=123  Identities=14%  Similarity=0.175  Sum_probs=79.1

Q ss_pred             CCcchhhhhccccccccchHhHHHhhHHHHHHc-----------CCCccccccccchHHHHHhhcCCC---HH--HHHHH
Q psy7090          97 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLEN-----------GKDKIVPVLPHLILPIKNALSTRN---PE--VICET  160 (253)
Q Consensus        97 y~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~-----------~~~KilPvlPqLI~PiK~AL~trd---~~--V~~~~  160 (253)
                      +...|+.++.+|.....+-+.-|-..+..+++.           ..+-+.|.+++|+.-|-.+|+...   +.  ....+
T Consensus       494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l  573 (960)
T 1wa5_C          494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL  573 (960)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence            455788888999876666667777778877763           235688999999999999998751   11  22345


Q ss_pred             HHHHHHHHhcCCcccccchhHHHhhchhhhhhhccc-CCCCcccccchhcccchhHHHHHHHHHHHHhCChh
Q psy7090         161 LKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN-KNTGDAIDYSQMKRENIGDLVQETLQILERHGGED  231 (253)
Q Consensus       161 L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~lnlfk~~n-~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~d  231 (253)
                      +++|..++..   .++++.||+-.+++.|--.-+.- .|-.         +..+...+-|+|..+-+..|++
T Consensus       574 ~~al~~vv~~---~~~~~~p~~~~l~~~L~~~l~~~~~~~~---------~~~~~~~~~e~l~~l~~~~~~~  633 (960)
T 1wa5_C          574 MRSIFRVLQT---SEDSIQPLFPQLLAQFIEIVTIMAKNPS---------NPRFTHYTFESIGAILNYTQRQ  633 (960)
T ss_dssp             HHHHHHHHHH---HTTTTGGGHHHHHHHHHHHHHHHTTSCC---------CHHHHHHHHHHHHHHHHTSCGG
T ss_pred             HHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHhCCC---------CcHHHHHHHHHHHHHHhcCCcc
Confidence            6666666543   37899999999998765322221 1111         1223334566666666665654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=80.19  E-value=1.2  Score=44.14  Aligned_cols=87  Identities=15%  Similarity=0.174  Sum_probs=69.8

Q ss_pred             cchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCcccc
Q psy7090          99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMVGE  176 (253)
Q Consensus        99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~t--rd~~V~~~~L~~Lq~Lv~~~~~VG~  176 (253)
                      ..||.++.|| .  .+..--|-..+.++.+..++.+.|.+++|+.-+-.+++.  -+.+.....++++-.++...+  ++
T Consensus       546 ~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~--~~  620 (971)
T 2x1g_F          546 PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR--PE  620 (971)
T ss_dssp             HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC--TT
T ss_pred             HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC--HH
Confidence            3667777888 2  556777778888898888889999999999999999998  357888888888888876543  58


Q ss_pred             cchhHHHhhchhhh
Q psy7090         177 ALVPYYKQILPHLN  190 (253)
Q Consensus       177 ALvPyyRqlLP~ln  190 (253)
                      ...||+.++++++.
T Consensus       621 ~~~~~~~~ll~~l~  634 (971)
T 2x1g_F          621 EIPKYLDIIVSPCF  634 (971)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88999999877754

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=80.11  E-value=1.5  Score=39.66  Aligned_cols=48  Identities=15%  Similarity=0.241  Sum_probs=27.0

Q ss_pred             cccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccchhHHHhhchhhh
Q psy7090         138 LPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLN  190 (253)
Q Consensus       138 lPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~ln  190 (253)
                      +++++..|.+.|+..+++|-..++++|..++   ..+|+...+  .+++|.+.
T Consensus       517 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~---~~~~~~~~~--~~~~p~l~  564 (588)
T 1b3u_A          517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIG---PILDNSTLQ--SEVKPILE  564 (588)
T ss_dssp             HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG---GGSCHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCchHHHHHHHHHHHHH---HHhchhhhH--HHHHHHHH
Confidence            3556666666677666777666666666664   233443322  34555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	5e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.003
d1qgra_	876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	0.004

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 102 PIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRN--PEVICE 159
           P     L + + P    A   I D+  + ++        ++  +   +S  N   E+   
Sbjct: 642 PYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPA 701

Query: 160 TLKVLQHLVTSSSMVGEALVPYYKQILPHL--NMYKDLNKNTGDAIDYSQMKRENIGDLV 217
            L V   + ++   +G   +PY   I+              T +A+DY     E + D  
Sbjct: 702 VLSVFGDIASN---IGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758

Query: 218 QETLQIL 224
              +  L
Sbjct: 759 VGIVAGL 765

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 3/98 (3%)

Query: 92   IKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST 151
            +  ++ +  LP     L       +      +   + +    I P+L + I      L  
Sbjct: 955  LTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1014

Query: 152  RNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHL 189
             +  V    L        +       +      +LPHL
Sbjct: 1015 PDLNVRRVALVTFNSAAHN---KPSLIRDLLDTVLPHL 1049

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 20/169 (11%), Positives = 50/169 (29%), Gaps = 10/169 (5%)

Query: 42  NTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYL 101
                   K + +    +          +    +A++  S   +       + +     L
Sbjct: 608 QRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNIL 667

Query: 102 PIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETL 161
            + +  +++     +  +   + DL +     + P +   +  +   L+     V     
Sbjct: 668 TLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNAT 727

Query: 162 KVLQHLVTSSSMVGEALVPYYKQILPHL-------NMYKDLNKNTGDAI 203
             +  +      +G  + PY   +L  L       N  K L +NT   I
Sbjct: 728 WAIGEISIQ---MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI 773

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 102 PIFFDGLRETEYPYKFFASKG-IHDLLENGKDKIVPVLPHLILPIKNALSTRN--PEVIC 158
           P    GL+         A+ G + DL    +  I+P    ++  +   L   N    V  
Sbjct: 652 PFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKP 711

Query: 159 ETLKVLQHLVTSSSMVGEALVPYYKQILPHLN--MYKDLNKNTGDAIDYSQMKRENIGDL 216
           + L V   +  +   +G     Y + +L  L       ++K+  D +DY    RE+  + 
Sbjct: 712 QILSVFGDIALA---IGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEA 768

Query: 217 VQETLQIL 224
               +Q L
Sbjct: 769 YTGIVQGL 776

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	94.65
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	93.05
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.31
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.57
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	91.51
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	91.39
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	91.35
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	81.97

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.65  E-value=0.03  Score=49.35  Aligned_cols=88  Identities=17%  Similarity=0.297  Sum_probs=74.6

Q ss_pred             chhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCCccccc
Q psy7090         100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR--NPEVICETLKVLQHLVTSSSMVGEA  177 (253)
Q Consensus       100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~tr--d~~V~~~~L~~Lq~Lv~~~~~VG~A  177 (253)
                      .+|.+..+|.+.+...+..|...+.++....++.+.|.+++++..|-+.|...  ++++-..++.+|..++   ..+|++
T Consensus       640 i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~---~~~~~~  716 (861)
T d2bpta1         640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIA---SNIGAD  716 (861)
T ss_dssp             HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH---HHHGGG
T ss_pred             HhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH---HHHHHH
Confidence            56778889999999999999999999988888999999999999999999765  4567677777777775   456999


Q ss_pred             chhHHHhhchhhh
Q psy7090         178 LVPYYKQILPHLN  190 (253)
Q Consensus       178 LvPyyRqlLP~ln  190 (253)
                      +.||+-+++|.+-
T Consensus       717 ~~~~l~~~~~~l~  729 (861)
T d2bpta1         717 FIPYLNDIMALCV  729 (861)
T ss_dssp             GHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999864

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.05  E-value=0.047  Score=48.07  Aligned_cols=116  Identities=15%  Similarity=0.155  Sum_probs=77.9

Q ss_pred             hhhhhccccccccc-hHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccch
Q psy7090         101 LPIFFDGLRETEYP-YKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV  179 (253)
Q Consensus       101 LPiFfdGLrEt~~P-Y~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALv  179 (253)
                      +..+...+.....+ .+--+...+..+...-++.+.|.+++++..|-.+|+..+++|...++.++..++.   ..|+.+.
T Consensus       599 ~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~---~~~~~~~  675 (861)
T d2bpta1         599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN---SLEEDFR  675 (861)
T ss_dssp             HHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH---HTGGGGH
T ss_pred             HHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHH---HhHHHhH
Confidence            34444444444333 2223444555666666788999999999999999999999999999998888754   5689999


Q ss_pred             hHHHhhchhh-hhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChh
Q psy7090         180 PYYKQILPHL-NMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGED  231 (253)
Q Consensus       180 PyyRqlLP~l-nlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~d  231 (253)
                      ||..++++.| +.+++.+.+            .+++..+-++|..+-...|++
T Consensus       676 ~~~~~i~~~L~~~l~~~~~~------------~~~k~~~~~~l~~i~~~~~~~  716 (861)
T d2bpta1         676 RYSDAMMNVLAQMISNPNAR------------RELKPAVLSVFGDIASNIGAD  716 (861)
T ss_dssp             HHHHHHHHHHHHHHHCTTCC------------TTHHHHHHHHHHHHHHHHGGG
T ss_pred             hhHHHHHHHHHHHhCCCCCC------------HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999875 344433221            234445555555555544543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.033  Score=45.38  Aligned_cols=78  Identities=13%  Similarity=0.206  Sum_probs=59.0

Q ss_pred             CcchhhhhccccccccchHhHHHhhHHHHHHc-CCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7090          98 QYYLPIFFDGLRETEYPYKFFASKGIHDLLEN-GKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE  176 (253)
Q Consensus        98 ~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~-~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~  176 (253)
                      ..++|.+.+++...+-..+.-|...+-.+.+. .++.+-|.+|+++..|..+|+..++.|-.+|+.+|.++.   +.+++
T Consensus       364 ~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~---~~~~~  440 (458)
T d1ibrb_         364 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLPE  440 (458)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH---HHGGG
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHhhc
Confidence            45677788888876655566566666666554 346678999999999999999999999999999998885   44454


Q ss_pred             cc
Q psy7090         177 AL  178 (253)
Q Consensus       177 AL  178 (253)
                      ..
T Consensus       441 ~~  442 (458)
T d1ibrb_         441 AA  442 (458)
T ss_dssp             GC
T ss_pred             cc
Confidence            43

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.065  Score=47.55  Aligned_cols=89  Identities=18%  Similarity=0.247  Sum_probs=70.2

Q ss_pred             chhhhhccccccccc-hHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCCcccc
Q psy7090         100 YLPIFFDGLRETEYP-YKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR--NPEVICETLKVLQHLVTSSSMVGE  176 (253)
Q Consensus       100 yLPiFfdGLrEt~~P-Y~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~tr--d~~V~~~~L~~Lq~Lv~~~~~VG~  176 (253)
                      .+|.++.+|....+| -+..|..-+.++....++.+.|.+++++..+=..|+..  ++++-..++.++..++.   .+|+
T Consensus       650 ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~---~~~~  726 (876)
T d1qgra_         650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL---AIGG  726 (876)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH---HHGG
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH---HHhH
Confidence            456677888888877 45566666677777788999999999999999999755  36677777887777764   4699


Q ss_pred             cchhHHHhhchhhhh
Q psy7090         177 ALVPYYKQILPHLNM  191 (253)
Q Consensus       177 ALvPyyRqlLP~lnl  191 (253)
                      ...||..+++|.+.-
T Consensus       727 ~~~~yl~~~l~~l~~  741 (876)
T d1qgra_         727 EFKKYLEVVLNTLQQ  741 (876)
T ss_dssp             GGGGGHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999999998763

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.12  Score=47.87  Aligned_cols=115  Identities=12%  Similarity=0.144  Sum_probs=82.1

Q ss_pred             HHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccchhHHHhhchhhhhhhcccCC
Q psy7090         119 ASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKN  198 (253)
Q Consensus       119 A~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~lnlfk~~n~n  198 (253)
                      |..-+.|+....+..+.|.+++++..|-.+|+..+.+|..++..++-.|+.   ..|+++-||+.++++.|.-..+.. +
T Consensus       685 a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~---~~~~~~~py~~~il~~L~~il~~~-~  760 (888)
T d1qbkb_         685 SFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISI---QMGIEMQPYIPMVLHQLVEIINRP-N  760 (888)
T ss_dssp             HHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHH---HTGGGGGGGSHHHHHHHHHHHTCT-T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHHcCC-C
Confidence            333345666677889999999999999999999999998888887777754   458999999999988766333211 1


Q ss_pred             CCcccccchhcccchhHHHHHHHHHHHHhCChhHHHHhhhcCCccccee
Q psy7090         199 TGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCI  247 (253)
Q Consensus       199 ~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~inIKymIPTYeSc~  247 (253)
                                ..+++.+=+..||..|-...++..-..+...+|++.+.+
T Consensus       761 ----------~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l  799 (888)
T d1qbkb_         761 ----------TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSL  799 (888)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHH
T ss_pred             ----------ccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHh
Confidence                      124566667788888877776554445666666665544

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.034  Score=52.49  Aligned_cols=92  Identities=15%  Similarity=0.128  Sum_probs=73.7

Q ss_pred             CCCcchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccc
Q psy7090          96 NYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVG  175 (253)
Q Consensus        96 Dy~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG  175 (253)
                      +-..++|.+.+.|.....--+..|...+..++...++.+-|.+.++|.++=.+|+..|++|-..++..|..++...   .
T Consensus       959 ~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~---p 1035 (1207)
T d1u6gc_         959 DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK---P 1035 (1207)
T ss_dssp             SGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHC---G
T ss_pred             CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC---h
Confidence            4456889988888765544566666666666767788899999999999999999999999999999999998764   3


Q ss_pred             ccchhHHHhhchhhh
Q psy7090         176 EALVPYYKQILPHLN  190 (253)
Q Consensus       176 ~ALvPyyRqlLP~ln  190 (253)
                      ..+-||+-++||.+-
T Consensus      1036 ~li~~~l~~llp~l~ 1050 (1207)
T d1u6gc_        1036 SLIRDLLDTVLPHLY 1050 (1207)
T ss_dssp             GGTGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            445699999999853

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.16  Score=46.94  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=73.0

Q ss_pred             CCcchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7090          97 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE  176 (253)
Q Consensus        97 y~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~  176 (253)
                      ++..++.+++++.+....-+--|-..+..+.+.+++.+.|.+++++..+-.++...+.++....+++++.++   +.+|+
T Consensus       476 ~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~---~~~~~  552 (888)
T d1qbkb_         476 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA---DSVGH  552 (888)
T ss_dssp             TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH---HHHGG
T ss_pred             hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---Hhhhc
Confidence            456777777887776655666677788888888889999999999999999999999999888888888775   55677


Q ss_pred             cch--hHHHhhchhhh
Q psy7090         177 ALV--PYYKQILPHLN  190 (253)
Q Consensus       177 ALv--PyyRqlLP~ln  190 (253)
                      .+.  +|+..++|.+-
T Consensus       553 ~~~~~~~~~~l~~~l~  568 (888)
T d1qbkb_         553 HLNKPEYIQMLMPPLI  568 (888)
T ss_dssp             GGCSHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHH
Confidence            773  57888888764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.97  E-value=0.76  Score=42.96  Aligned_cols=94  Identities=11%  Similarity=0.110  Sum_probs=75.4

Q ss_pred             CCCcchhhhhcccccccc-chHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcc
Q psy7090          96 NYQYYLPIFFDGLRETEY-PYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMV  174 (253)
Q Consensus        96 Dy~~yLPiFfdGLrEt~~-PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~V  174 (253)
                      -+..+++.++++|..... ..+-.+.+++..|....+.++.|.+++++..+-.+++..++++-..++++|..++..   .
T Consensus       207 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~---~  283 (1207)
T d1u6gc_         207 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR---C  283 (1207)
T ss_dssp             -CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC---T
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh---C
Confidence            355677878888765433 344556778888888888999999999999999999999999999999999999754   4


Q ss_pred             cccchhHHHhhchhhhhh
Q psy7090         175 GEALVPYYKQILPHLNMY  192 (253)
Q Consensus       175 G~ALvPyyRqlLP~lnlf  192 (253)
                      +..+.||+.++++.+--+
T Consensus       284 ~~~~~~~~~~ii~~~l~~  301 (1207)
T d1u6gc_         284 PKEVYPHVSTIINICLKY  301 (1207)
T ss_dssp             TCCCHHHHHHHHHHHTTC
T ss_pred             hhhhhhhHHHHHHHHHHH
Confidence            677899999998876543