Psyllid ID: psy7092

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
MLKLSTPPLCQMLAGQYLFHLEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHDATHKKGEEEPVDFFAEHTNGDNFGFDAPAHPIITPTPTPTITASGSTSLAHPQNNNENTGAPSVEKAFSEAKPSNLGVKKIQSKKPSGPQNNNENTGAPSVEKAFSDAKPSNLGVKKIQSKKPSGFVCRCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCTHTLPLAFTPSGMGFASMSRSGGLGGKKLGKGGLGAQKVKANFAELEKEAELADSLKMQSATSKPQSVADVERENEDSIENISLRLAYQDISKQQKQEEEKLKAYNPKKAEQIERLGMYNNNNNNRLLSGR
ccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccEEccccEEEEEcccccccccccEEEEEEcccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEcEEEcccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccc
ccccccccccHHHHHHHHHHHccHHHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHccHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccEEcccccccccccccccccccccEcccccccEEEEEEccccccccccHHHHHHHHcccccccccHcccccccccccccccccccccccccccccHcHHHHccccccccccccccccccHEccccHHHHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccEEccc
mlklstpplcqmLAGQYLFHLEKVKNSKLLMLQIITFfpqecfdcnaknptwssvTYGVFICIDCSAVHRGLGVHLSFVrstqldtnWTWVQLRQMQlggnanapngqntRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFnqhnctskdaQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHDAthkkgeeepvdffaehtngdnfgfdapahpiitptptptitasgstslahpqnnnentgapsvekafseakpsnlgvkkiqskkpsgpqnnnentgapsvekafsdakpsnlgvkkiqskkpsgfvcrcppfyqanvltttpprqsLVAVHRGLGVHLSFVrstqldtnWTWVQLRQMQLGgnanamkaefgpfnagqfdspppdcthtlplaftpsgmgfasmsrsgglggkklgkgglgAQKVKANFAELEKEAELADSLkmqsatskpqsvadverENEDSIENISLRLAYQDISKQQKQEEEKLKAYNPKKAEQIERLGMynnnnnnrllsgr
MLKLSTPPLCQMLAGQYLFHLEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHDATHKKGEEEPVDFFAEHTNGDNFGFDAPAHPIITPTPTPTITASGSTSLAHPQNNNENTGAPSVEKAFSEAKpsnlgvkkiqskkpsgpqnnneNTGAPSVEKAFSDAKPSNLGVKKIQSKKPSGFVCRCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCTHTLPLAFTPSGMGFASMSRSGGLGGKKLGKGGLGAQKVKANFAELEKEAELadslkmqsatskpqsvadverenEDSIENISLRLAYQDISKQQKQEeeklkaynpkkaeqierlgmynnnnnnrllsgr
MLKLSTPPLCQMLAGQYLFHLEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHDATHKKGEEEPVDFFAEHTNGDNFGFDapahpiitptptptitaSGSTSLAHPQNNNENTGAPSVEKAFSEAKPSNLGVKKIQSKKPSGPQNNNENTGAPSVEKAFSDAKPSNLGVKKIQSKKPSGFVCRCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCTHTLPLAFTPSGMGFASMSRSgglggkklgkgglgAQKVKANFAELEKEAELADSLKMQSATSKPQSVADVERENEDSIENISLRLAYQDISkqqkqeeekLKAYNPKKAEQIERLGMYnnnnnnRLLSGR
********LCQMLAGQYLFHLEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTS*********RAAQLYREKLQHAAVQAMKIHGTKLFLDAMH************DFFAEHTNGDNFGFDA*************************************************************************************************GFVCRCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEF**************************************************************************************************************************************************
********************************QIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHF****************************************************************************************************************************************************************SVEKAFSDAKPSNLGVKKIQSKKPSGFVCRCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCTHTLPLA***************************************************************************************************************YNNN*********
MLKLSTPPLCQMLAGQYLFHLEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHDATHKKGEEEPVDFFAEHTNGDNFGFDAPAHPIITPTPTPTITASGSTSLAHPQNNN*********************************************EKAFSDAKPSNLGVKKIQSKKPSGFVCRCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCTHTLPLAFTPSGMGFASMSRSGGLGGKKLGKGGLGAQKVKANFAELEKEAEL************************DSIENISLRLAYQDISKQQKQEEEKLKAYNPKKAEQIERLGMYNNNNNNRLLSGR
*********************EKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAPNGQNTRLSLW*******LAFFKQLVNLWLNIEMYHFSIST******S***QHNCTSKD**QKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHD*********PVDFFAEHTNGDNFGFDAPAHP**TPT***T************************************************************************************GFVCRCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCTHTLPLAFTPS*******************************FAELEKEAELADSLKMQSATS***************IENISLRLAYQDISKQQKQEEEKLKAYNPKKAEQIERLGMYNN**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLKLSTPPLCQMLAGQYLFHLEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHDATHKKGEEEPVDFFAEHTNGDNFGFDAPAHPIITPTPTPTITASGSTSLAHPQNNNENTGAPSVEKAFSEAKPSNLGVKKIQSKKPSGPQNNNENTGAPSVEKAFSDAKPSNLGVKKIQSKKPSGFVCRCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCTHTLPLAFTPSGMGFASMSRSGGLGGKKLGKGGLGxxxxxxxxxxxxxxxxxxxxxKMQSATSKPQSVADVERENEDSIENISLRLAYQDISKQQKQEEEKLKAYNPKKAEQIERLGMYNNNNNNRLLSGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query540 2.2.26 [Sep-21-2011]
Q8N6H7521 ADP-ribosylation factor G yes N/A 0.346 0.358 0.429 8e-46
Q3MID3520 ADP-ribosylation factor G yes N/A 0.298 0.309 0.428 2e-44
Q99K28520 ADP-ribosylation factor G yes N/A 0.298 0.309 0.423 3e-44
A1L520520 ADP-ribosylation factor G yes N/A 0.320 0.332 0.412 1e-43
Q5RAT7521 ADP-ribosylation factor G yes N/A 0.285 0.295 0.438 3e-43
Q28CM8526 ADP-ribosylation factor G yes N/A 0.361 0.370 0.393 3e-43
Q17R07517 ADP-ribosylation factor G no N/A 0.353 0.369 0.408 2e-41
Q4KLN7525 ADP-ribosylation factor G no N/A 0.359 0.369 0.399 2e-41
Q09531529 Uncharacterized protein F yes N/A 0.238 0.243 0.474 2e-40
Q4R4C9516 ADP-ribosylation factor G N/A N/A 0.348 0.364 0.403 3e-40
>sp|Q8N6H7|ARFG2_HUMAN ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1 Back     alignment and function desciption
 Score =  185 bits (469), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 103/240 (42%), Positives = 129/240 (53%), Gaps = 53/240 (22%)

Query: 42  CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
           CFDC AKNP+W+S+TYGVF+CIDCS VHR LGVHLSF+RST+LD+NW W QLR MQ+GGN
Sbjct: 26  CFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGN 85

Query: 102 ANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTS 161
           ANA                                               +FF QH CT+
Sbjct: 86  ANA----------------------------------------------TAFFRQHGCTA 99

Query: 162 KDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHDAT-HKKGEEEPVDFFAEHT 220
            DA  KYNSRAAQ+YREK++     A+  HGT L++D M  A  +   E++  DFF EHT
Sbjct: 100 NDANTKYNSRAAQMYREKIRQLGSAALARHGTDLWIDNMSSAVPNHSPEKKDSDFFTEHT 159

Query: 221 NGDNFGFDAPA-HPIITPTPTPTITASGSTSLAHPQNNNENTGAPSVEKAFSEAKPSNLG 279
                 +DAPA  P  T  P P+  +SG   LA P++        +  KA  E K S +G
Sbjct: 160 QPP--AWDAPATEPSGTQQPAPSTESSG---LAQPEHGPNTDLLGTSPKASLELKSSIIG 214
GTPase-activating protein (GAP) for ADP ribosylation factor 1 (ARF1). Implicated in coatomer-mediated protein transport between the Golgi complex and the endoplasmic reticulum. Hydrolysis of ARF1-bound GTP may lead to dissociation of coatomer from Golgi-derived membranes to allow fusion with target membranes.
Homo sapiens (taxid: 9606)
>sp|Q3MID3|ARFG2_RAT ADP-ribosylation factor GTPase-activating protein 2 OS=Rattus norvegicus GN=Arfgap2 PE=2 SV=1 Back     alignment and function description
>sp|Q99K28|ARFG2_MOUSE ADP-ribosylation factor GTPase-activating protein 2 OS=Mus musculus GN=Arfgap2 PE=1 SV=1 Back     alignment and function description
>sp|A1L520|ARFG2_BOVIN ADP-ribosylation factor GTPase-activating protein 2 OS=Bos taurus GN=ARFGAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAT7|ARFG2_PONAB ADP-ribosylation factor GTPase-activating protein 2 OS=Pongo abelii GN=ARFGAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q28CM8|ARFG2_XENTR ADP-ribosylation factor GTPase-activating protein 2 OS=Xenopus tropicalis GN=arfgap2 PE=2 SV=1 Back     alignment and function description
>sp|Q17R07|ARFG3_BOVIN ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q4KLN7|ARFG3_RAT ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus norvegicus GN=Arfgap3 PE=2 SV=1 Back     alignment and function description
>sp|Q09531|YQP4_CAEEL Uncharacterized protein F07F6.4 OS=Caenorhabditis elegans GN=F07F6.4 PE=4 SV=2 Back     alignment and function description
>sp|Q4R4C9|ARFG3_MACFA ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
242011701557 ADP-ribosylation factor GTPase-activatin 0.270 0.262 0.551 3e-51
380020105529 PREDICTED: ADP-ribosylation factor GTPas 0.394 0.402 0.426 9e-50
307207942523 ADP-ribosylation factor GTPase-activatin 0.416 0.430 0.429 1e-49
340714901534 PREDICTED: ADP-ribosylation factor GTPas 0.355 0.359 0.442 2e-49
322790272521 hypothetical protein SINV_11656 [Solenop 0.418 0.433 0.424 3e-49
195378298561 GJ13704 [Drosophila virilis] gi|19415507 0.405 0.390 0.438 6e-49
350398779533 PREDICTED: ADP-ribosylation factor GTPas 0.353 0.358 0.440 8e-49
209571484540 ADP-ribosylation factor GTPase activatin 0.270 0.270 0.507 1e-48
110766623534 PREDICTED: ADP-ribosylation factor GTPas 0.4 0.404 0.413 3e-48
340714903545 PREDICTED: ADP-ribosylation factor GTPas 0.359 0.355 0.427 3e-48
>gi|242011701|ref|XP_002426585.1| ADP-ribosylation factor GTPase-activating protein, putative [Pediculus humanus corporis] gi|212510734|gb|EEB13847.1| ADP-ribosylation factor GTPase-activating protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/194 (55%), Positives = 120/194 (61%), Gaps = 48/194 (24%)

Query: 42  CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
           CFDCNAKNPTWSSVTYGVFICIDCSAVHR LGVH++FVRSTQLDTNWTWVQLRQMQLGGN
Sbjct: 27  CFDCNAKNPTWSSVTYGVFICIDCSAVHRSLGVHVTFVRSTQLDTNWTWVQLRQMQLGGN 86

Query: 102 ANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTS 161
           ANA N                                              FF QHNC +
Sbjct: 87  ANAAN----------------------------------------------FFRQHNCHT 100

Query: 162 KDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHDATHKKGEEEPVDFFAEH-T 220
            DAQQKY SRAAQLY++KL+ AAVQAMKIHGTKL L+  ++       +E +DFF EH T
Sbjct: 101 TDAQQKYTSRAAQLYKDKLKQAAVQAMKIHGTKLHLEPSNEKPEDNVVKE-IDFFEEHST 159

Query: 221 NGDNFGFDAPAHPI 234
             DNF     +H +
Sbjct: 160 ANDNFDESFTSHNL 173

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380020105|ref|XP_003693936.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like [Apis florea] Back     alignment and taxonomy information
>gi|307207942|gb|EFN85501.1| ADP-ribosylation factor GTPase-activating protein 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340714901|ref|XP_003395961.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|322790272|gb|EFZ15271.1| hypothetical protein SINV_11656 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|195378298|ref|XP_002047921.1| GJ13704 [Drosophila virilis] gi|194155079|gb|EDW70263.1| GJ13704 [Drosophila virilis] Back     alignment and taxonomy information
>gi|350398779|ref|XP_003485302.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|209571484|ref|NP_001129372.1| ADP-ribosylation factor GTPase activating protein 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|110766623|ref|XP_393119.3| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|340714903|ref|XP_003395962.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
FB|FBgn0037182552 ArfGAP3 "ADP-ribosylation fact 0.120 0.117 0.861 5.2e-45
UNIPROTKB|E9PIY6327 ARFGAP2 "ADP-ribosylation fact 0.116 0.192 0.777 1.1e-36
UNIPROTKB|E9PQP3274 ARFGAP2 "ADP-ribosylation fact 0.116 0.229 0.777 1.1e-36
UNIPROTKB|G5E9L0385 ARFGAP2 "Zinc finger protein 2 0.116 0.163 0.777 1.1e-36
UNIPROTKB|E2QYR7520 ARFGAP2 "Uncharacterized prote 0.116 0.121 0.777 8.1e-33
UNIPROTKB|F1SIB9520 ARFGAP2 "Uncharacterized prote 0.116 0.121 0.777 1.3e-32
UNIPROTKB|Q8N6H7521 ARFGAP2 "ADP-ribosylation fact 0.116 0.120 0.777 1.3e-32
UNIPROTKB|A6QR32486 ARFGAP2 "Uncharacterized prote 0.116 0.129 0.761 2.3e-32
UNIPROTKB|A1L520520 ARFGAP2 "ADP-ribosylation fact 0.116 0.121 0.761 4.3e-32
RGD|1306177520 Arfgap2 "ADP-ribosylation fact 0.116 0.121 0.761 4.7e-32
FB|FBgn0037182 ArfGAP3 "ADP-ribosylation factor GTPase activating protein 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 320 (117.7 bits), Expect = 5.2e-45, Sum P(2) = 5.2e-45
 Identities = 56/65 (86%), Positives = 60/65 (92%)

Query:    40 QECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 99
             + CFDC AK PTWSSVTYG+FICIDCSAVHR LGVHL+FVRST LDTNWTW+QLRQMQLG
Sbjct:    27 KSCFDCAAKAPTWSSVTYGIFICIDCSAVHRNLGVHLTFVRSTNLDTNWTWLQLRQMQLG 86

Query:   100 GNANA 104
             GNANA
Sbjct:    87 GNANA 91
GO:0008060 "ARF GTPase activator activity" evidence=ISS
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046331 "lateral inhibition" evidence=IMP
GO:0005912 "adherens junction" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0001745 "compound eye morphogenesis" evidence=IMP
UNIPROTKB|E9PIY6 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PQP3 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G5E9L0 ARFGAP2 "Zinc finger protein 289, ID1 regulated, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYR7 ARFGAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SIB9 ARFGAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N6H7 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A6QR32 ARFGAP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A1L520 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1306177 Arfgap2 "ADP-ribosylation factor GTPase activating protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 2e-33
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 3e-32
COG5347319 COG5347, COG5347, GTPase-activating protein that r 1e-26
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 3e-23
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 2e-12
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 2e-11
COG5347319 COG5347, COG5347, GTPase-activating protein that r 6e-08
PLN03114 395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 2e-05
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information 
 Score =  122 bits (308), Expect = 2e-33
 Identities = 38/63 (60%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 42  CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
           C DC A NPTW+S+  G+FICI CS VHR LGVH+S VRS  LD  WT  QL  M+ GGN
Sbjct: 16  CADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDK-WTPEQLEFMKAGGN 74

Query: 102 ANA 104
             A
Sbjct: 75  KRA 77

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 540
KOG0706|consensus 454 100.0
PLN03114395 ADP-ribosylation factor GTPase-activating protein 100.0
KOG0704|consensus386 100.0
KOG0703|consensus287 99.98
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.97
PF01412116 ArfGap: Putative GTPase activating protein for Arf 99.97
smart00105112 ArfGap Putative GTP-ase activating proteins for th 99.96
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 99.94
PLN03131 705 hypothetical protein; Provisional 99.94
KOG0703|consensus287 99.89
KOG0705|consensus749 99.79
KOG0704|consensus 386 99.74
smart00105112 ArfGap Putative GTP-ase activating proteins for th 99.73
PLN03114 395 ADP-ribosylation factor GTPase-activating protein 99.73
KOG0706|consensus 454 99.71
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.71
KOG0521|consensus785 99.7
PF01412116 ArfGap: Putative GTPase activating protein for Arf 99.68
KOG0818|consensus 669 99.64
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 99.47
PLN03131 705 hypothetical protein; Provisional 99.45
KOG1117|consensus 1186 99.44
KOG0702|consensus524 99.2
KOG0705|consensus749 99.1
KOG0521|consensus 785 98.74
KOG1117|consensus 1186 97.01
KOG0818|consensus 669 96.97
KOG0702|consensus 524 83.07
>KOG0706|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-52  Score=437.63  Aligned_cols=267  Identities=46%  Similarity=0.705  Sum_probs=214.1

Q ss_pred             hHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcCcCCcC
Q psy7092          26 NSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAP  105 (540)
Q Consensus        26 n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gGN~~an  105 (540)
                      ..++++.|...+.||+|||||++||+|+||+||||||++||++||+|||||+||||++||+ |+|.||++|+.|||.+|+
T Consensus        10 ~~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLDs-Ws~~qLR~M~~GGN~nA~   88 (454)
T KOG0706|consen   10 IQTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLDS-WSWEQLRRMQVGGNANAR   88 (454)
T ss_pred             HHHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeeccccc-CCHHHHhHhhhcCchhHH
Confidence            4566677777899999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             CCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHhhcCCCCcchhcccCcHHHHHHHHHHHHHHH
Q psy7092         106 NGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAV  185 (540)
Q Consensus       106 ~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~~~~~~~~~i~~KY~sraA~~YrekL~~~a~  185 (540)
                                                                    .||++|||...+++.||++|+|++||++|..++.
T Consensus        89 ----------------------------------------------~FFkqhg~~t~d~~aKY~SraA~~Yr~kl~~lv~  122 (454)
T KOG0706|consen   89 ----------------------------------------------VFFKQHGCVTLDANAKYNSRAAKLYREKLKKLVQ  122 (454)
T ss_pred             ----------------------------------------------HHHHHcCCcchhhhhhhccHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             HHHHHcCCeeeEcCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCCCCCCCCc
Q psy7092         186 QAMKIHGTKLFLDAMHDATHKKGEEEPVDFFAEHTNGDNFGFDAPAHPIITPTPTPTITASGSTSLAHPQNNNENTGAPS  265 (540)
Q Consensus       186 ~a~~~~~~~~~~d~~~~~~~~~~~~~~~Dff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (540)
                      ++|.+||+.++++...  ++..++.++.|||++|++...                                         
T Consensus       123 kam~~~~~~l~l~~~~--~~~~~~~~~~dffs~~~k~~~-----------------------------------------  159 (454)
T KOG0706|consen  123 KAMAEHGTSLLLDSAV--SSGSPESEDSDFFSESDKESS-----------------------------------------  159 (454)
T ss_pred             HHHHhcCccccccCCC--CCCCCccccccchhhcccccc-----------------------------------------
Confidence            9999999999999933  556778889999999987431                                         


Q ss_pred             chhhcccCCCCCcccccccCCCCCCCCCCCCCCCCCcccccccCCCCCcccccccccCCCCcccccCCcccccccccCCC
Q psy7092         266 VEKAFSEAKPSNLGVKKIQSKKPSGPQNNNENTGAPSVEKAFSDAKPSNLGVKKIQSKKPSGFVCRCPPFYQANVLTTTP  345 (540)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~crc~~~~~~~~~~~~~  345 (540)
                                            .++|+++.+....  .+++.   .+...|.+|+..+                      
T Consensus       160 ----------------------~~~~s~~~l~~~~--s~~~S---~~v~sg~~k~p~~----------------------  190 (454)
T KOG0706|consen  160 ----------------------KHEPSTDALKSLS--SPSAS---NTVVSGKKKPPVT----------------------  190 (454)
T ss_pred             ----------------------ccCCccccccccc--CCccc---cccccccccCCcc----------------------
Confidence                                  1344444444311  11111   1112255544333                      


Q ss_pred             CCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q psy7092         346 PRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCTHTLPLAFTPSGMGFA  425 (540)
Q Consensus       346 ~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~~kY~~~~A~~yK~~~P~s~~~lp~~~~~s~~~~~  425 (540)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (454)
T KOG0706|consen  191 --------------------------------------------------------------------------------  190 (454)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCcccCCCCCCCccccc-chHHHHHHHHHHhHhhhhhccCCCCccccccccccccccchhhHHHHHHHHHHH
Q psy7092         426 SMSRSGGLGGKKLGKGGLGAQKVKA-NFAELEKEAELADSLKMQSATSKPQSVADVERENEDSIENISLRLAYQDISKQQ  504 (540)
Q Consensus       426 ~fir~~~~~~k~~~~g~~~a~kvst-sFs~iE~qAq~adk~ke~kk~~~~~~~~~~k~e~e~~~~~sSlRlAykdle~q~  504 (540)
                          .+.++.++.  +.+|++++.+ +|..|+.+++.++++..+...       .+... ++ ....+++++|+|+..++
T Consensus       191 ----~k~~g~~k~--~~lgarkv~t~s~~~~~~~~~~~~~~~i~a~s-------~~~~s-~~-~~~~s~~~~~~e~~dd~  255 (454)
T KOG0706|consen  191 ----KKGLGAKKG--VTLGARKVNTKSFKSIESQAQEAEKNKIKAAS-------PKPSS-EE-SSARSSRLARQELQDDR  255 (454)
T ss_pred             ----ccccccccc--cccCceecccccccchhhccchhhhccccccC-------CCcch-hh-hcccchhhhhhHHHHHH
Confidence                222333332  2489999965 799999999999998877652       11111 22 34467899999999999


Q ss_pred             HHHHHHHHhcCCCchhHHHhhccc
Q psy7092         505 KQEEEKLKAYNPKKAEQIERLGMY  528 (540)
Q Consensus       505 K~~e~klk~~dPkKa~QaERLGM~  528 (540)
                      +++|++ ++ ||+|+.++|||||.
T Consensus       256 ~~~E~k-~~-d~~k~~~~~rlgmg  277 (454)
T KOG0706|consen  256 KKEEAK-AK-DGKKASSSERLGMG  277 (454)
T ss_pred             Hhhhhh-hc-Ccccccchhhhccc
Confidence            999998 56 99999999999994

>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0704|consensus Back     alignment and domain information
>KOG0703|consensus Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>KOG0703|consensus Back     alignment and domain information
>KOG0705|consensus Back     alignment and domain information
>KOG0704|consensus Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0706|consensus Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0521|consensus Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>KOG0818|consensus Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>KOG1117|consensus Back     alignment and domain information
>KOG0702|consensus Back     alignment and domain information
>KOG0705|consensus Back     alignment and domain information
>KOG0521|consensus Back     alignment and domain information
>KOG1117|consensus Back     alignment and domain information
>KOG0818|consensus Back     alignment and domain information
>KOG0702|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 1e-38
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 3e-11
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 1e-36
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 4e-12
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 4e-18
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 2e-05
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 5e-18
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 1e-05
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 2e-17
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 4e-04
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 1e-14
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 3e-13
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 3e-13
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 8e-10
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 8e-10
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 9e-10
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 6e-09
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 1e-08
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 2e-08
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 2e-08
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 2e-08
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 1e-05
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 2e-05
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure 
Iteration: 1

 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 94/158 (59%), Gaps = 46/158 (29%)
Query: 42  CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
           CFDC AKNP+W+S+TYGVF+CIDCS  HR LGVHLSF+RST+LD+NW+W QLR MQ+GGN
Sbjct: 32  CFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGN 91
Query: 102 ANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTS 161
           A+A                                               SFF+QH C++
Sbjct: 92  ASAS----------------------------------------------SFFHQHGCST 105
Query: 162 KDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDA 199
            D   KYNSRAAQLYREK++  A QA + HGT L+LD+
Sbjct: 106 NDTNAKYNSRAAQLYREKIKSLASQATRKHGTDLWLDS 143
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 1e-47
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 2e-15
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 2e-46
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 1e-15
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 2e-40
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 5e-14
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 3e-39
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 6e-14
2owa_A138 Arfgap-like finger domain containing protein; zinc 3e-38
2owa_A138 Arfgap-like finger domain containing protein; zinc 9e-15
3o47_A329 ADP-ribosylation factor GTPase-activating protein 6e-30
3o47_A329 ADP-ribosylation factor GTPase-activating protein 3e-10
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 1e-29
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 2e-10
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 1e-29
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 2e-10
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 2e-26
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 1e-08
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 2e-25
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 5e-07
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 3e-25
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 4e-08
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 1e-24
3jue_A 368 Arfgap with coiled-coil, ANK repeat and PH domain 7e-08
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 3e-23
3lju_X 386 ARF-GAP with dual PH domain-containing protein 1; 7e-07
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 3e-19
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 9e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-05
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
 Score =  162 bits (410), Expect = 1e-47
 Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 46/165 (27%)

Query: 40  QECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 99
           + CFDC AKNP+W+S+TYGVF+CIDCS  HR LGVHLSF+RST+LD+NW+W QLR MQ+G
Sbjct: 30  KVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVG 89

Query: 100 GNANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNC 159
           GNA+A                                               SFF+QH C
Sbjct: 90  GNASAS----------------------------------------------SFFHQHGC 103

Query: 160 TSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHDAT 204
           ++ D   KYNSRAAQLYREK++  A QA + HGT L+LD+   ++
Sbjct: 104 STNDTNAKYNSRAAQLYREKIKSLASQATRKHGTDLWLDSSGPSS 148
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query540
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 100.0
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 100.0
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 99.98
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 99.97
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.95
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.95
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.95
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.91
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.91
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.9
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 99.82
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 99.81
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 99.72
2owa_A138 Arfgap-like finger domain containing protein; zinc 99.72
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 99.72
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 99.71
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.7
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.7
3jue_A 368 Arfgap with coiled-coil, ANK repeat and PH domain 99.68
3lju_X 386 ARF-GAP with dual PH domain-containing protein 1; 99.61
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.42
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.38
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.37
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.36
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.4e-40  Score=305.90  Aligned_cols=133  Identities=58%  Similarity=1.017  Sum_probs=125.2

Q ss_pred             hhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcCcC
Q psy7092          23 KVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNA  102 (540)
Q Consensus        23 ~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gGN~  102 (540)
                      .++.+++++.|+..|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+||||+||++|+++||+.|+.+||.
T Consensus        13 k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~   92 (149)
T 2crw_A           13 KQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNA   92 (149)
T ss_dssp             HHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhH
Confidence            35678889999999999999999999999999999999999999999999999999999999955999999999999999


Q ss_pred             CcCCCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHhhcCCCCcchhcccCcHHHHHHHHHHHH
Q psy7092         103 NAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQH  182 (540)
Q Consensus       103 ~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~~~~~~~~~i~~KY~sraA~~YrekL~~  182 (540)
                      ++|                                              +||.+|++...+|++||++++|++||++|.+
T Consensus        93 ~an----------------------------------------------~~~e~~~~~~~~i~~KY~s~~a~~Yr~~l~~  126 (149)
T 2crw_A           93 SAS----------------------------------------------SFFHQHGCSTNDTNAKYNSRAAQLYREKIKS  126 (149)
T ss_dssp             HHH----------------------------------------------HHHHHHCCCCCCHHHHTTSHHHHHHHHHHHH
T ss_pred             HHH----------------------------------------------HHHHhcCCCCcchhhCcCcHHHHHHHHHHHH
Confidence            999                                              7777778878889999999999999999999


Q ss_pred             HHHHHHHHcCCeeeEcCCC
Q psy7092         183 AAVQAMKIHGTKLFLDAMH  201 (540)
Q Consensus       183 ~a~~a~~~~~~~~~~d~~~  201 (540)
                      ++++++++||++|++|+..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~  145 (149)
T 2crw_A          127 LASQATRKHGTDLWLDSSG  145 (149)
T ss_dssp             HHHHHHHTTSSSCTTSCCC
T ss_pred             HHHHHHHHcCCeeEeCCCC
Confidence            9999999999999998854
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 540
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 2e-22
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 1e-04
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.5 bits (224), Expect = 2e-22
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 40  QECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 99
             C DC A +PTW S   G+  CI+CS +HR LGVH S ++S  LD      +L   +  
Sbjct: 16  DVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV-LGTSELLLAKNI 74

Query: 100 GNANA 104
           GNA  
Sbjct: 75  GNAGF 79
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query540
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 99.97
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 99.73
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 81.98
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.4e-34  Score=251.28  Aligned_cols=120  Identities=25%  Similarity=0.363  Sum_probs=98.7

Q ss_pred             HHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcCcCCcCC
Q psy7092          27 SKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAPN  106 (540)
Q Consensus        27 ~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gGN~~an~  106 (540)
                      +++|..|+..|+|+.|||||+++|+|+|++||||||+.|||+||+||+|||+|||++||+ |++++|+.|+.+||..+| 
T Consensus         3 ~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~-w~~~~i~~~~~~GN~~~n-   80 (122)
T d1dcqa2           3 KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV-LGTSELLLAKNIGNAGFN-   80 (122)
T ss_dssp             HHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCGGGGHHHHHSCHHHHH-
T ss_pred             HHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCC-CCHHHHHHHHHHhHHHHH-
Confidence            578888999999999999999999999999999999999999999999999999999999 999999999999999999 


Q ss_pred             CccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHhhcCCCCcchhccc
Q psy7092         107 GQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQKY  168 (540)
Q Consensus       107 ~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~~~~~~~~~i~~KY  168 (540)
                            .+|++.              +-..+...+.+.++...+++||++.|...+|++.||
T Consensus        81 ------~~~ea~--------------~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~~  122 (122)
T d1dcqa2          81 ------EIMECC--------------LPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKH  122 (122)
T ss_dssp             ------HHHTTT--------------CCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCS
T ss_pred             ------HHHHhh--------------CCcccCcCCCCCccHHHHHHHHHHHHHhCccccccC
Confidence                  666651              111222334455667788999775555544444443
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure