Psyllid ID: psy7111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MDNRMRRQHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEEccHHHHHHHHHHHHcccHcccccccccccccccccc
Coil and Loop (DISEMBL)
mdnrmrrqhagnyyepvpnqfdggdaihQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLlrgmdddfdrtggflnnSMARSFH
Flexible Loop (DISEMBL)
mdnrmrrqhagnyyepvpNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH
Low Complexity Region (SEG)
MDNRMRRQHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH
Disordered region (IsUnstruct)
****************************************KIQALKSLTIDIGTEVKYQNEHLLRGM********************
Disordered Region (DISOPRED)
************************************DLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA****
Disordered Region (DISEMBL)
*********AGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH
Disordered Region (DISPRO)
*DNRMRRQHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMD*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDNRMRRQHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
O15155	118	BET1 homolog OS=Homo sapi	yes	N/A	0.712	0.525	0.523	1e-10
Q62896	118	BET1 homolog OS=Rattus no	yes	N/A	0.712	0.525	0.523	4e-10
O35623	118	BET1 homolog OS=Mus muscu	yes	N/A	0.701	0.516	0.532	4e-10
O13932	117	Protein transport protein	yes	N/A	0.678	0.504	0.383	1e-05
O35153	111	BET1-like protein OS=Mus	no	N/A	0.678	0.531	0.383	0.0007

>sp|O15155|BET1_HUMAN BET1 homolog OS=Homo sapiens GN=BET1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 22 DGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81
           G  A  +ENE+LT  LR+K+ A+KSL+I+IG EVK QN+ LL  MD  FD T GFL  +
Sbjct: 23 SGYSACEEENERLTESLRSKVTAIKSLSIEIGHEVKTQNK-LLAEMDSQFDSTTGFLGKT 81

Query: 82 MAR 84
          M +
Sbjct: 82 MGK 84

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE involved in the docking process of ER-derived vesicles with the cis-Golgi membrane.
Homo sapiens (taxid: 9606)

>sp|Q62896|BET1_RAT BET1 homolog OS=Rattus norvegicus GN=Bet1 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 22 DGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81
           G +A  +EN++LT  LR+K+ A+KSL+I+IG EVK QN+ LL  MD  FD T GFL  +
Sbjct: 23 SGYNACEEENDRLTESLRSKVTAIKSLSIEIGHEVKNQNK-LLAEMDSQFDSTTGFLGKT 81

Query: 82 MAR 84
          M R
Sbjct: 82 MGR 84

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE involved in the docking process of ER-derived vesicles with the cis-Golgi membrane.

Rattus norvegicus (taxid: 10116)

>sp|O35623|BET1_MOUSE BET1 homolog OS=Mus musculus GN=Bet1 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 23 GGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82
          G +A  +EN++LT  LR+K+ A+KSL+I+IG EVK QN+ LL  MD  FD T GFL  +M
Sbjct: 24 GYNACEEENDRLTESLRSKVTAIKSLSIEIGHEVKNQNK-LLAEMDSQFDSTTGFLGKTM 82

Query: 83 AR 84
           R
Sbjct: 83 GR 84

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE involved in the docking process of ER-derived vesicles with the cis-Golgi membrane.

Mus musculus (taxid: 10090)

>sp|O13932|BET1_SCHPO Protein transport protein bet1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet1 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR 84
          D++  EN++  S L  K+++LK LT++IGTE+   +  L+  M+D FD T   L+ +M R
Sbjct: 28 DSLENENDERISKLTGKVKSLKELTMNIGTEIT-SSTKLMESMNDSFDSTKSLLSGTMTR 86

SNARE required for targeting and fusion of ER-derived transport vesicles with the Golgi complex.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O35153|BET1L_MOUSE BET1-like protein OS=Mus musculus GN=Bet1l PE=3 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR 84
          D + +EN+++   L +K+  LKSL +DI  + + QN + L GMD DF    G L  S+ R
Sbjct: 15 DILDRENKRMADSLASKVTRLKSLALDIDRDTEDQNRY-LDGMDSDFTSVTGLLTGSVKR 73

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
307209976	113	BET1-like protein [Harpegnathos saltator	0.896	0.690	0.617	4e-19
350539285	121	uncharacterized protein LOC100571150 [Ac	0.942	0.677	0.571	3e-18
332026180	112	BET1-like protein [Acromyrmex echinatior	0.885	0.687	0.580	8e-18
91092516	110	PREDICTED: similar to CG14084 CG14084-PA	0.896	0.709	0.548	4e-17
307175728	113	BET1-like protein [Camponotus floridanus	0.896	0.690	0.567	2e-16
380014688	112	PREDICTED: BET1 homolog [Apis florea]	0.896	0.696	0.562	3e-16
110751020	112	PREDICTED: BET1 homolog [Apis mellifera]	0.896	0.696	0.562	4e-16
383850578	112	PREDICTED: BET1 homolog [Megachile rotun	0.896	0.696	0.55	6e-16
156541564	111	PREDICTED: BET1 homolog [Nasonia vitripe	0.885	0.693	0.55	8e-16
332375092	108	unknown [Dendroctonus ponderosae]	0.850	0.685	0.575	2e-15

>gi|307209976|gb|EFN86745.1| BET1-like protein [Harpegnathos saltator]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 65/81 (80%), Gaps = 3/81 (3%)

Query: 5  MRRQHAGNY-YEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHL 63
          MRR H+G Y YEP+P+     +A+  ENE++T +LR+KI ALKSL+IDIGTEVKYQ++ +
Sbjct: 1  MRRSHSGGYGYEPLPST-STQNAMEDENERVTEELRDKIHALKSLSIDIGTEVKYQDK-M 58

Query: 64 LRGMDDDFDRTGGFLNNSMAR 84
          LR MDDDFDRT GFL+ S+AR
Sbjct: 59 LRSMDDDFDRTSGFLSGSVAR 79

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350539285|ref|NP_001232939.1| uncharacterized protein LOC100571150 [Acyrthosiphon pisum] gi|239791927|dbj|BAH72366.1| ACYPI21107 [Acyrthosiphon pisum]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 61/84 (72%), Gaps = 2/84 (2%)

Query: 2  DNRMRRQHAGNYYEPVP-NQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQN 60
          D  MRR H GNYY+P+P N   GG+ I  EN+ LT  L++K+  LKSL+IDIG EVKYQ 
Sbjct: 5  DKIMRRSHGGNYYDPLPSNSSYGGEFIETENDDLTEQLKDKVNTLKSLSIDIGAEVKYQ- 63

Query: 61 EHLLRGMDDDFDRTGGFLNNSMAR 84
          + LLR MD DF+ TGGFL+N++ R
Sbjct: 64 DRLLRDMDHDFETTGGFLSNTLGR 87

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026180|gb|EGI66322.1| BET1-like protein [Acromyrmex echinatior]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 64/81 (79%), Gaps = 4/81 (4%)

Query: 5  MRRQHAGNY-YEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHL 63
          MRR H+G Y YEP+P+     + +  ENE++T +L++KI ALKSL+IDIGTEVKYQ++ +
Sbjct: 1  MRRSHSGGYGYEPLPST--SHNVVEDENERMTEELKDKIHALKSLSIDIGTEVKYQDK-M 57

Query: 64 LRGMDDDFDRTGGFLNNSMAR 84
          L+GMDDDFDRT G L+ S+AR
Sbjct: 58 LKGMDDDFDRTSGSLSGSVAR 78

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092516|ref|XP_969661.1| PREDICTED: similar to CG14084 CG14084-PA [Tribolium castaneum] gi|270012892|gb|EFA09340.1| hypothetical protein TcasGA2_TC001666 [Tribolium castaneum]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 62/82 (75%), Gaps = 4/82 (4%)

Query: 5  MRRQHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLL 64
          MRR HAGNYYEP+P      + + +EN+++ ++LR+K+ ALKSL+IDIG E+KYQ++ LL
Sbjct: 1  MRRAHAGNYYEPLPQT---SNEVEEENDRMANELRDKVGALKSLSIDIGNELKYQDK-LL 56

Query: 65 RGMDDDFDRTGGFLNNSMARSF 86
          R +DDD DRT GFL N+M R  
Sbjct: 57 RDVDDDMDRTRGFLGNTMNRVL 78

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175728|gb|EFN65586.1| BET1-like protein [Camponotus floridanus]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 62/81 (76%), Gaps = 3/81 (3%)

Query: 5  MRRQHAGNY-YEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHL 63
          MRR H+G Y YEP+P+     +AI  E+E++T +L++KI  LKSL+IDIGTEVKYQ++ L
Sbjct: 1  MRRSHSGGYSYEPLPST-STHNAIEDESERMTEELKHKIHTLKSLSIDIGTEVKYQDK-L 58

Query: 64 LRGMDDDFDRTGGFLNNSMAR 84
          LR MDDDF+RT G L+ S+ R
Sbjct: 59 LRNMDDDFERTSGSLSGSVTR 79

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014688|ref|XP_003691354.1| PREDICTED: BET1 homolog [Apis florea]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 58/80 (72%), Gaps = 2/80 (2%)

Query: 5  MRRQHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLL 64
          MRR H    YEP+P      D +  ENE++T  L++KI ALKSL+IDIG EV+YQ++ LL
Sbjct: 1  MRRSHTNYSYEPLPTT-SSHDGLEDENEKMTEHLKDKIYALKSLSIDIGQEVQYQDK-LL 58

Query: 65 RGMDDDFDRTGGFLNNSMAR 84
          RGMD+DF+RT G L NS+AR
Sbjct: 59 RGMDEDFERTSGSLTNSVAR 78

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110751020|ref|XP_001122558.1| PREDICTED: BET1 homolog [Apis mellifera]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 58/80 (72%), Gaps = 2/80 (2%)

Query: 5  MRRQHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLL 64
          MRR H    YEP+P      D +  ENE++T  L++KI ALKSL+IDIG EV+YQ++ LL
Sbjct: 1  MRRSHTNYSYEPLPTT-SSHDGLEDENERMTEHLKDKIYALKSLSIDIGQEVQYQDK-LL 58

Query: 65 RGMDDDFDRTGGFLNNSMAR 84
          RGMD+DF+RT G L NS+AR
Sbjct: 59 RGMDEDFERTSGSLTNSVAR 78

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850578|ref|XP_003700872.1| PREDICTED: BET1 homolog [Megachile rotundata]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 61/80 (76%), Gaps = 2/80 (2%)

Query: 5  MRRQHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLL 64
          MRR H+   YEP+P      D +  ENE++T+ L++KI ALKSL+IDIGTEV+YQ++ +L
Sbjct: 1  MRRAHSNYAYEPLPTT-SNHDNLEDENERMTNHLKDKIHALKSLSIDIGTEVQYQDK-ML 58

Query: 65 RGMDDDFDRTGGFLNNSMAR 84
          RGMD+DF+RT G L +S+AR
Sbjct: 59 RGMDEDFERTSGSLTSSVAR 78

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156541564|ref|XP_001600460.1| PREDICTED: BET1 homolog [Nasonia vitripennis]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 59/80 (73%), Gaps = 3/80 (3%)

Query: 5  MRRQHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLL 64
          MRR H+G  YEP+P+      ++ +EN+Q+   L+ KI ALKSL+IDIGTEVKYQN+ +L
Sbjct: 1  MRRTHSGYGYEPLPST--SSHSLEEENDQMAEQLKEKISALKSLSIDIGTEVKYQNK-ML 57

Query: 65 RGMDDDFDRTGGFLNNSMAR 84
            MDDDF+RT G L+ S+AR
Sbjct: 58 GDMDDDFERTSGSLSGSVAR 77

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375092|gb|AEE62687.1| unknown [Dendroctonus ponderosae]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 59/80 (73%), Gaps = 6/80 (7%)

Query: 5  MRRQHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLL 64
          MRR H   +YEP+P   D   AI QENE++T +L  KI  LKSL+IDIGTEV++Q++ LL
Sbjct: 1  MRRSH---HYEPLPQ--DANSAIEQENERMTHELAEKIGVLKSLSIDIGTEVQHQHK-LL 54

Query: 65 RGMDDDFDRTGGFLNNSMAR 84
          R +DDD DRTGGFL  +M+R
Sbjct: 55 RDVDDDMDRTGGFLGKTMSR 74

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
FB|FBgn0260857	117	Bet1 [Drosophila melanogaster	0.862	0.641	0.563	1.4e-16
UNIPROTKB|A6H7A4	118	BET1 "Uncharacterized protein"	0.793	0.584	0.527	7.1e-13
UNIPROTKB|F1SFA8	118	BET1 "Uncharacterized protein"	0.793	0.584	0.527	7.1e-13
UNIPROTKB|E1BRC4	115	BET1 "Uncharacterized protein"	0.896	0.678	0.469	2.8e-11
MGI|MGI:1343104	118	Bet1 "blocked early in transpo	0.701	0.516	0.532	2.8e-11
RGD|2203	118	Bet1 "Bet1 golgi vesicular mem	0.701	0.516	0.532	2.8e-11
UNIPROTKB|O15155	118	BET1 "BET1 homolog" [Homo sapi	0.701	0.516	0.532	3.5e-11
ZFIN|ZDB-GENE-040625-3	113	bet1 "blocked early in transpo	0.896	0.690	0.469	3.5e-11
WB|WBGene00043064	107	nbet-1 [Caenorhabditis elegans	0.735	0.598	0.417	6.8e-08
POMBASE|SPAC23C4.13	117	bet1 "SNARE Bet1 (predicted)"	0.678	0.504	0.383	2.9e-07

FB|FBgn0260857 Bet1 [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 49/87 (56%), Positives = 59/87 (67%)

Query:     5 MRRQHAGNY-YEPVPNQFDGG------DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVK 57
             MRR    NY Y+P+ NQ   G      DA+  ENEQ   +L+ KI ALKSLTIDIG EV+
Sbjct:     1 MRRN---NYPYQPL-NQHPSGPHPASHDALEAENEQAAEELKQKIGALKSLTIDIGNEVR 56

Query:    58 YQNEHLLRGMDDDFDRTGGFLNNSMAR 84
             YQ++ LLRG+DDD DRT GFL N+M R
Sbjct:    57 YQDK-LLRGIDDDMDRTSGFLGNAMTR 82

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|A6H7A4 BET1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 39/74 (52%), Positives = 49/74 (66%)

Query:    11 GNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDD 70
             GNY    PN   G  A  +ENE+LT  LRNK+ A+KSL+I+IG EVK+QN+ LL  MD  
Sbjct:    16 GNY--GYPNS--GYSACEEENERLTESLRNKVTAIKSLSIEIGHEVKHQNK-LLAEMDSQ 70

Query:    71 FDRTGGFLNNSMAR 84
             FD T GFL  +M +
Sbjct:    71 FDSTTGFLGKTMGK 84

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|F1SFA8 BET1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 39/74 (52%), Positives = 49/74 (66%)

Query:    11 GNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDD 70
             GNY    PN   G  A  +ENE+LT  LRNK+ A+KSL+I+IG EVK+QN+ LL  MD  
Sbjct:    16 GNY--GYPNS--GYSACEEENERLTESLRNKVTAIKSLSIEIGHEVKHQNK-LLAEMDSQ 70

Query:    71 FDRTGGFLNNSMAR 84
             FD T GFL  +M +
Sbjct:    71 FDSTTGFLGKTMGK 84

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|E1BRC4 BET1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 39/83 (46%), Positives = 53/83 (63%)

Query:     5 MRRQHAGNYYEPVPNQ--FDGGDAIHQE-NEQLTSDLRNKIQALKSLTIDIGTEVKYQNE 61
             MRR   G+   P  N    + G ++++E NE+LT  LR K+ A+KSL+I+IGTEVK QN+
Sbjct:     1 MRRAGLGDG-APTGNYGYTNSGYSVYEEENERLTESLRTKVSAIKSLSIEIGTEVKNQNK 59

Query:    62 HLLRGMDDDFDRTGGFLNNSMAR 84
              LL  MD+DFD   G L  +M R
Sbjct:    60 -LLSEMDNDFDSATGLLGATMGR 81

GO:0000139 "Golgi membrane" evidence=IEA

MGI|MGI:1343104 Bet1 "blocked early in transport 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 33/62 (53%), Positives = 44/62 (70%)

Query:    23 GGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82
             G +A  +EN++LT  LR+K+ A+KSL+I+IG EVK QN+ LL  MD  FD T GFL  +M
Sbjct:    24 GYNACEEENDRLTESLRSKVTAIKSLSIEIGHEVKNQNK-LLAEMDSQFDSTTGFLGKTM 82

Query:    83 AR 84
              R
Sbjct:    83 GR 84

GO:0000139 "Golgi membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0031201 "SNARE complex" evidence=ISO

GO:0031985 "Golgi cisterna" evidence=ISO

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=ISO

RGD|2203 Bet1 "Bet1 golgi vesicular membrane trafficking protein" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 33/62 (53%), Positives = 44/62 (70%)

Query:    23 GGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82
             G +A  +EN++LT  LR+K+ A+KSL+I+IG EVK QN+ LL  MD  FD T GFL  +M
Sbjct:    24 GYNACEEENDRLTESLRSKVTAIKSLSIEIGHEVKNQNK-LLAEMDSQFDSTTGFLGKTM 82

Query:    83 AR 84
              R
Sbjct:    83 GR 84

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0031201 "SNARE complex" evidence=IDA;TAS

GO:0031985 "Golgi cisterna" evidence=IDA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IDA

UNIPROTKB|O15155 BET1 "BET1 homolog" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query:    23 GGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82
             G  A  +ENE+LT  LR+K+ A+KSL+I+IG EVK QN+ LL  MD  FD T GFL  +M
Sbjct:    24 GYSACEEENERLTESLRSKVTAIKSLSIEIGHEVKTQNK-LLAEMDSQFDSTTGFLGKTM 82

Query:    83 AR 84
              +
Sbjct:    83 GK 84

GO:0015031 "protein transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040625-3 bet1 "blocked early in transport 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 38/81 (46%), Positives = 48/81 (59%)

Query:     5 MRRQHAGNYYEPVPNQFDGGDAIHQE-NEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHL 63
             MRR   G    P  N    G ++++E NE L   LR+K+ ALK L+IDIG EVK  N+ +
Sbjct:     1 MRRAGLGEG-GPQGNYVASGYSVYEEENEHLQEGLRDKVHALKHLSIDIGNEVKIHNK-M 58

Query:    64 LRGMDDDFDRTGGFLNNSMAR 84
             L  MD DFD TGG L  +M R
Sbjct:    59 LGEMDSDFDSTGGLLGATMGR 79

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00043064 nbet-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 28/67 (41%), Positives = 41/67 (61%)

Query:    18 PNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGF 77
             PNQ    + + + N+ L   L +K+ ALK +TI IG +V+ QN  LL  MD+DFD + G 
Sbjct:    11 PNQ--DANYLERHNDDLVGGLSSKVAALKRVTIAIGDDVREQNR-LLNDMDNDFDSSKGL 67

Query:    78 LNNSMAR 84
             L ++M R
Sbjct:    68 LQSTMRR 74

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPAC23C4.13 bet1 "SNARE Bet1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query:    25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR 84
             D++  EN++  S L  K+++LK LT++IGTE+    + L+  M+D FD T   L+ +M R
Sbjct:    28 DSLENENDERISKLTGKVKSLKELTMNIGTEITSSTK-LMESMNDSFDSTKSLLSGTMTR 86

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35623	BET1_MOUSE	No assigned EC number	0.5322	0.7011	0.5169	yes	N/A
O15155	BET1_HUMAN	No assigned EC number	0.5238	0.7126	0.5254	yes	N/A
Q62896	BET1_RAT	No assigned EC number	0.5238	0.7126	0.5254	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	87
pfam05739	62	pfam05739, SNARE, SNARE domain	5e-05
smart00397	66	smart00397, t_SNARE, Helical region found in SNARE	0.001
cd00193	60	cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se	0.001

>gnl|CDD|203323 pfam05739, SNARE, SNARE domain

 Score = 37.1 bits (87), Expect = 5e-05
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 31 NEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR 84
           ++   +L + I  LK L +D+G EV+ Q E LL  +DD+ D T   +  +  R
Sbjct: 1  RDEALEELESSIGELKQLFLDMGEEVEEQGE-LLDRIDDNVDNTQSRVERANKR 53

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62

>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs

 Score = 33.7 bits (78), Expect = 0.001
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR 84
           A  +E ++    L   IQ LK + +D+GTE++ Q E  L  ++D+ D     L  +  R
Sbjct: 4  LAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGE-QLDRIEDNVDDADVNLKKANKR 62

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66

>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

 Score = 33.6 bits (78), Expect = 0.001
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 28 HQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR 84
           QE ++    L   I  LK + +D+GTEV+ Q E L R ++D+ D     +  +  R
Sbjct: 1  EQERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDR-IEDNVDNADVNVKRANKR 56

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
KOG3385|consensus	118		99.86
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	99.28
KOG3202|consensus	235		99.23
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	99.09
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	98.95
KOG3065|consensus	273		98.64
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	93.65
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	90.98
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	85.59
PRK00846	77	hypothetical protein; Provisional	85.39
KOG0810|consensus	297		84.28
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	83.06

>KOG3385|consensus

Probab=99.86  E-value=1.9e-22  Score=137.68  Aligned_cols=82  Identities=43%  Similarity=0.603  Sum_probs=72.8

Q ss_pred             hhhhhccCCCCCC----CCCCCCCc--chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccc
Q psy7111           4 RMRRQHAGNYYEP----VPNQFDGG--DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGF   77 (87)
Q Consensus         4 ~~~~~~~~~~~~~----~~~~~~~~--~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~   77 (87)
                      ||+|.++.++-+|    ..+++|+|  +.+|.|||++++.|..||.+||.|+++|++||+.||+ +||.|+++||+|+++
T Consensus         1 r~~R~g~~dg~~~l~~~~~~a~ss~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnk-lld~mdddfdsts~~   79 (118)
T KOG3385|consen    1 RGSRFGLFDGSNGLEDGVSRASSSSHLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNK-LLDGMDDDFDSTSGF   79 (118)
T ss_pred             CCcccCcccCCCcccccccccCchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHH-HHHHhccchhhhHHH
Confidence            6889988888666    22233334  7888999999999999999999999999999999999 999999999999999


Q ss_pred             hhHhhhhcc
Q psy7111          78 LNNSMARSF   86 (87)
Q Consensus        78 L~~t~~Rl~   86 (87)
                      |++||+|++
T Consensus        80 L~gtm~r~~   88 (118)
T KOG3385|consen   80 LSGTMGRLK   88 (118)
T ss_pred             HHHHHHHHH
Confidence            999999986

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=99.28  E-value=1.1e-11  Score=73.93  Aligned_cols=56  Identities=34%  Similarity=0.484  Sum_probs=53.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111          30 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF   86 (87)
Q Consensus        30 QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~   86 (87)
                      |+++.|+.|+..|..||+++.+|+.||.+|+. +||.+++.|+.|...|..+.++|.
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~-~ld~i~~~vd~~~~~l~~~~~~l~   56 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNE-MLDRIEDNVDRANENLKKGNKKLK   56 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999 999999999999999999999875

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>KOG3202|consensus

Probab=99.23  E-value=2.1e-11  Score=91.56  Aligned_cols=60  Identities=27%  Similarity=0.475  Sum_probs=55.7

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF   86 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~   86 (87)
                      +.+++| |+.|+.|++.|++||++|..||+|++.|+. |||+|+++||.|.++|.++++++.
T Consensus       145 qm~~eQ-De~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~-llDdl~~e~d~t~srl~~~~~~l~  204 (235)
T KOG3202|consen  145 QMLQEQ-DEGLDGLSATVQRLKGMALAMGEELEEQGR-LLDDLDNEMDRTESRLDRVMKRLA  204 (235)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555 789999999999999999999999999999 999999999999999999999875

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=99.09  E-value=4.6e-10  Score=65.15  Aligned_cols=58  Identities=31%  Similarity=0.428  Sum_probs=54.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        29 ~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      ++.++.++.|+..|..|++++.+|+.||..|+. +||.+.+.|+.+...++.+.+++.+
T Consensus         2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~-~ld~i~~~~~~~~~~~~~~~~~l~k   59 (60)
T cd00193           2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGE-LLDRIEDNVDNADVNVKRANKRLKK   59 (60)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345778999999999999999999999999999 9999999999999999999999864

>smart00397 t_SNARE Helical region found in SNAREs

Probab=98.95  E-value=4.8e-09  Score=61.57  Aligned_cols=62  Identities=27%  Similarity=0.412  Sum_probs=56.4

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      ..+.++.++.++.|+..|..|++++.+|+.||..|+. +||.+.+.++.+...++.+.+++.+
T Consensus         4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~-~ld~i~~~~d~~~~~~~~~~~~l~~   65 (66)
T smart00397        4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGE-QLDRIEDNVDDADVNLKKANKRLKK   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            3445556789999999999999999999999999999 9999999999999999999998864

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>KOG3065|consensus

Probab=98.64  E-value=1.5e-07  Score=72.21  Aligned_cols=62  Identities=26%  Similarity=0.382  Sum_probs=58.9

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      ...|.+.|+.|++|+..+..||.||.++|.||+.||. .||.+.+.+|+....+..+-+|+++
T Consensus       210 ~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~-~Ld~I~~k~d~~d~~v~~~n~R~~k  271 (273)
T KOG3065|consen  210 PAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNE-RLDRIEDKVDRLDLRVDKANKRAKK  271 (273)
T ss_pred             ChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHhHHHHHHHhhhhHHHHHHHHHHh
Confidence            6778888999999999999999999999999999999 9999999999999999999999864

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=93.65  E-value=0.35  Score=35.90  Aligned_cols=56  Identities=21%  Similarity=0.265  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111          30 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF   86 (87)
Q Consensus        30 QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~   86 (87)
                      ..|...++|..=.+.||+-+..+++=+++.+. .|+.....+|+....|+....|++
T Consensus       164 ~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~-~L~~~~~~~d~n~~~l~~~~~rl~  219 (251)
T PF09753_consen  164 LQEDLTEEMLSLARQLKENSLAFSQILKEDNK-VLDRTEEGLDRNLSSLKRESKRLK  219 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33568899999999999999999999999999 999999999999999999988875

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=90.98  E-value=1.4  Score=26.06  Aligned_cols=55  Identities=15%  Similarity=0.183  Sum_probs=44.1

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhh
Q psy7111          27 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA   83 (87)
Q Consensus        27 le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~   83 (87)
                      |.++++ .|+.=...+.-.-++|.+|-.++..|+. .|......++.+...|..+-+
T Consensus         3 l~~e~~-~L~~s~~~~~e~~~~g~~~l~~L~~Qre-~L~~~~~kl~~i~~~l~~s~~   57 (66)
T PF12352_consen    3 LLRESD-SLQRSHRMADETEEIGAATLEDLRSQRE-QLKRVRDKLDDIDSNLPKSNS   57 (66)
T ss_dssp             HHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHH
Confidence            445544 6677777788888999999999999999 999999888888877765543

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=85.59  E-value=6.2  Score=24.11  Aligned_cols=49  Identities=12%  Similarity=0.105  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111          32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS   81 (87)
Q Consensus        32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t   81 (87)
                      +++|..|..++.-+-..-..+.+.|-.|.. .|+.|...+.....+|+..
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~-~I~~L~~~l~~L~~rl~~~   51 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQR-QIDRLQRQLRLLRERLREL   51 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            568899999999999999999999999999 9999999988888877653

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK00846 hypothetical protein; Provisional

Probab=85.39  E-value=7  Score=24.96  Aligned_cols=52  Identities=8%  Similarity=-0.052  Sum_probs=46.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111          29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS   81 (87)
Q Consensus        29 ~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t   81 (87)
                      +..+++++.|..+|.-+-..-..+.+.|-.|.. .|+.|...+.....+|+.+
T Consensus         9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~-~I~~L~~ql~~L~~rL~~~   60 (77)
T PRK00846          9 QALEARLVELETRLSFQEQALTELSEALADARL-TGARNAELIRHLLEDLGKV   60 (77)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            445678999999999999999999999999999 9999999998888888764

>KOG0810|consensus

Probab=84.28  E-value=3.2  Score=32.37  Aligned_cols=58  Identities=16%  Similarity=0.375  Sum_probs=48.1

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        26 ~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      .+++--+ .+-.|...+.-|.+|-.+|-..|+.|-. +||.+...+.++...+..+...+
T Consensus       200 Eiq~Rh~-~ik~LEksi~ELhqlFlDMa~LVe~QgE-mvd~IE~nV~~A~~~V~~g~~~~  257 (297)
T KOG0810|consen  200 EIQERHD-EIKKLEKSIRELHQLFLDMAVLVESQGE-MVDRIENNVENAVDYVEQGVDHL  257 (297)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444433 5678999999999999999999999999 99999999999888777765544

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=83.06  E-value=5.5  Score=27.54  Aligned_cols=50  Identities=20%  Similarity=0.268  Sum_probs=38.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchh
Q psy7111          29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN   79 (87)
Q Consensus        29 ~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~   79 (87)
                      .+.-++|+.|..|+...+.++..|.+||.+=.. -++.+..+++..+..+.
T Consensus        64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~-dv~~i~~dv~~v~~~V~  113 (126)
T PF07889_consen   64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE-DVSQIGDDVDSVQQMVE  113 (126)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            445567888888888888899999988887777 78888888877665544

The region featured in this family is approximately 100 amino acids long.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	87
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	7e-07
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	7e-05
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	1e-04

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82

 Score = 41.7 bits (98), Expect = 7e-07
 Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 11 GNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDD 70
          G++   +       + + +  ++    +   I  LK+++  IG E++ Q   +L     +
Sbjct: 1  GSHMASMTGG----NNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAV-MLEDFSHE 55

Query: 71 FDRTGGFLNNSMAR 84
           + T   L+N M +
Sbjct: 56 LESTQSRLDNVMKK 69

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66

 Score = 36.2 bits (84), Expect = 7e-05
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 24 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA 83
          G A   E ++    +   I  L+ + +D+G E+  QN  + R + +  D     ++ +  
Sbjct: 1  GSARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR-IMEKADSNKTRIDEANQ 59

Query: 84 R 84
          R
Sbjct: 60 R 60

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87

 Score = 36.4 bits (84), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 1  MDNRMRRQHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQN 60
          +D R +   +G +   V N     DA   E ++    +   I  L+ + +D+G E+  QN
Sbjct: 2  VDEREQMAISGGFIRRVTN-----DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQN 56

Query: 61 EHLLRGMDDDFDRTGGFLNNSMAR 84
             +  + +  D     ++ +  R
Sbjct: 57 R-QIDRIMEKADSNKTRIDEANQR 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	99.71
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	99.7
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	99.67
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	99.65
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	99.54
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	99.45
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	96.1
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	93.47
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	92.89
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	92.76
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	92.76
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	92.15
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	91.34

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=99.71  E-value=1.8e-17  Score=100.97  Aligned_cols=62  Identities=18%  Similarity=0.296  Sum_probs=59.1

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      +.+|+|+|+.|+.|+.+|++||++|++||+||+.||. +||.|+++||++..+|+.+.+|+++
T Consensus         2 d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~-~Ld~l~~~~d~~~~~l~~~~~rl~~   63 (66)
T 1n7s_D            2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNR-QIDRIMEKADSNKTRIDEANQRATK   63 (66)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999 9999999999999999999999863

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.70  E-value=1.7e-17  Score=100.77  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      ++|++| |+.|+.|+.+|++||++|++||+||+.||. +||+|+++||++..+|+++++|+++
T Consensus         2 ~~~~eq-D~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~-lLd~l~~~~d~~~~~l~~~~~rl~~   62 (65)
T 1gl2_D            2 SHMQEQ-DAGLDALSSIISRQKQMGQEIGNELDEQNE-IIDDLANLVENTDEKLRTEARRVTL   62 (65)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             cHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666 679999999999999999999999999999 9999999999999999999999875

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.67  E-value=1.4e-16  Score=102.10  Aligned_cols=62  Identities=19%  Similarity=0.317  Sum_probs=59.5

Q ss_pred             cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111          24 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF   86 (87)
Q Consensus        24 ~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~   86 (87)
                      .+.+|+++|+.|+.|+..|++||++|++||+||+.||. +||.|+++||++..+|..+.+|++
T Consensus        20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~-~Ld~i~~~~D~~~~rl~~~~~rl~   81 (87)
T 1sfc_D           20 NDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNR-QIDRIMEKADSNKTRIDEANQRAT   81 (87)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999 999999999999999999999886

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=99.65  E-value=5.4e-17  Score=102.79  Aligned_cols=61  Identities=20%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      +.+++| |+.|+.|+.+|.+||++|++||+||+.||. |||+|+++||++..+|+++++|+++
T Consensus        12 ~~~~eQ-D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~-lLd~l~~~~d~~~~~L~~~~~r~~~   72 (82)
T 2nps_D           12 NMGRMQ-DEQLELVSGSIGVLKNMSQRIGGELEEQAV-MLEDFSHELESTQSRLDNVMKKLAK   72 (82)
T ss_dssp             -------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777 568999999999999999999999999999 9999999999999999999999863

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.54  E-value=8.3e-15  Score=94.09  Aligned_cols=62  Identities=18%  Similarity=0.330  Sum_probs=59.0

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      +.+|.+.|+.|+.|+..|++||++|.+||+||+.||. +||.+++.+|++..+|..+.+|+++
T Consensus        22 d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~-~LD~i~~~~D~~~~rl~~~n~r~~k   83 (87)
T 1l4a_D           22 DAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNR-QVDRIQQKAESNESRIDEANKKATK   83 (87)
T ss_dssp             SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888999999999999999999999999999999 9999999999999999999998753

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=99.45  E-value=2.8e-13  Score=82.90  Aligned_cols=62  Identities=16%  Similarity=0.216  Sum_probs=59.4

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      +.+|.|.|+.|++|+..|++||++|.+||+||+.||. +||.+....|++..+|..+.+||+|
T Consensus         2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~-~ldrI~~k~d~~d~ri~~~~~Rl~~   63 (64)
T 3b5n_D            2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQK-RLNNIEESTDDLDINLHMNTNRLAG   63 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5688999999999999999999999999999999999 9999999999999999999999875

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=96.10  E-value=0.017  Score=37.42  Aligned_cols=61  Identities=15%  Similarity=0.286  Sum_probs=53.7

Q ss_pred             cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111          24 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF   86 (87)
Q Consensus        24 ~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~   86 (87)
                      ...+++. ++.+..|...+.-|.++-.++...|.+|.. +||.++..++.+...+..+...+.
T Consensus        13 l~~i~eR-~~eI~~Ie~~I~eL~~iF~dla~lV~eQge-~Id~Ie~nv~~a~~~v~~g~~eL~   73 (109)
T 3hd7_B           13 LSEIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDTK   73 (109)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667777 457899999999999999999999999999 999999999999998888776553

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=93.47  E-value=0.3  Score=29.44  Aligned_cols=58  Identities=16%  Similarity=0.342  Sum_probs=49.7

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        26 ~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      .+++. .+.+..|...|.-|.+|-.++..=|.+|.. +||.++..++.|...+..+..-+
T Consensus         4 ~i~eR-~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~~L   61 (77)
T 1jth_B            4 EIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDT   61 (77)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555 457899999999999999999999999999 99999999999888877765544

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=92.89  E-value=0.37  Score=28.67  Aligned_cols=53  Identities=11%  Similarity=0.245  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      .+.+..|...|.-|.+|-.++..=|.+|-. +||.++..++.|...+..+..-|
T Consensus         5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~eL   57 (71)
T 2nps_B            5 ETAIQQLEADILDVNQIFKDLAMMIHDQGD-LIDSIEANVESSEVHVERASDQL   57 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999999999999 99999999999988887766544

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=92.76  E-value=0.47  Score=28.09  Aligned_cols=58  Identities=16%  Similarity=0.164  Sum_probs=50.2

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        26 ~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      .+++. .+.+..|...|.-|.+|-.++..=|.+|.. +||.++..++.|...+..+...+
T Consensus         4 ~i~eR-~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~~L   61 (69)
T 3b5n_B            4 EVQAR-HQELLKLEKSMAELTQLFNDMEELVIEQQE-NVDVIDKNVEDAQLDVEQGVGHT   61 (69)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455 457899999999999999999999999999 99999999999998887776554

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=92.76  E-value=0.37  Score=28.30  Aligned_cols=57  Identities=12%  Similarity=0.308  Sum_probs=49.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          27 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        27 le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      +++. ...+..|...|.-|.+|-.++..=|.+|-. +||.++..++.|...+..+..-|
T Consensus         4 i~eR-~~~i~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~eL   60 (65)
T 1gl2_B            4 MHER-ESSIRQLEADIMDINEIFKDLGMMIHEQGD-VIDSIEANVESAEVHVQQANQQL   60 (65)
T ss_dssp             -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344 357899999999999999999999999999 99999999999998888776654

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=92.15  E-value=0.57  Score=28.67  Aligned_cols=59  Identities=15%  Similarity=0.339  Sum_probs=51.1

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      ..+++. .+.+..|...|.-|.+|-.++..=|.+|.. +||.++..++.+...+..+...|
T Consensus        14 ~~i~eR-~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~eL   72 (83)
T 1sfc_B           14 SEIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDT   72 (83)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666 457899999999999999999999999999 99999999999988887776544

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=91.34  E-value=0.87  Score=26.76  Aligned_cols=59  Identities=15%  Similarity=0.339  Sum_probs=51.2

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      ..+++. .+.+..|...|.-|.+|-.++..=|.+|.. +||.++..++.|...+..+..-+
T Consensus         5 ~~i~eR-~~ei~~Ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~~L   63 (68)
T 1n7s_B            5 SEIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDT   63 (68)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555 457899999999999999999999999999 99999999999998888776554

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00