Psyllid ID: psy7141

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MFQLRILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRYRKISSSL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccccccccccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccccccccccccccccccccHHcccccccccHHHHHHHccEEccccccccccccHEEEEEEccccccHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccEEEcEcccccccccEEEEcEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHcccEEccc
Coil and Loop (DISEMBL)
MFQLRILSNCVLhqlnsngklflplittasdlhtsqsCLKKSLAeievprftrhnnvvfppqqegeerrpafvchfkekikyspdkMWYIACLIRGMSVDQALIQLGYvakkgapfIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRleegkppknyywtgpqtgpeKLEEYLQSLRYRKISSSL
Flexible Loop (DISEMBL)
MFQLRILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEievprftrhnnvvfppqqegeerrpAFVCHFkekikyspdKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRrharvrmgrveYKYCTYFVrleegkppknyywtgpqtgpEKLEEYLQSLryrkisssl
Low Complexity Region (SEG)
MFQLRILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRYRKISSSL
Disordered region (IsUnstruct)
***LRILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPRFTRHNNVVF**********PAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTG************************
Disordered Region (DISOPRED)
********NCVLHQLNSN*K************HT***************************************CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEG********************YLQSLRYRK*****
Disordered Region (DISEMBL)
MFQLRILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRYRKISSSL
Disordered Region (DISPRO)
*F*LRILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRYRKIS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQLRILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRYRKISSSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q29IK4	233	39S ribosomal protein L22	yes	N/A	0.748	0.690	0.641	4e-56
Q9VXB5	233	39S ribosomal protein L22	yes	N/A	0.888	0.819	0.540	6e-55
P0C2C0	206	39S ribosomal protein L22	yes	N/A	0.920	0.961	0.470	2e-43
Q9NWU5	206	39S ribosomal protein L22	yes	N/A	0.893	0.932	0.478	9e-42
Q3SZX5	204	39S ribosomal protein L22	yes	N/A	0.874	0.921	0.477	2e-41
Q0VFH6	204	39S ribosomal protein L22	yes	N/A	0.827	0.872	0.494	1e-40
Q5RAH3	206	39S ribosomal protein L22	yes	N/A	0.916	0.956	0.457	5e-40
Q8BU88	206	39S ribosomal protein L22	yes	N/A	0.813	0.849	0.488	2e-37
A6U864	129	50S ribosomal protein L22	yes	N/A	0.474	0.790	0.4	5e-10
Q92QG5	129	50S ribosomal protein L22	yes	N/A	0.474	0.790	0.390	1e-09

>sp|Q29IK4|RM22_DROPS 39S ribosomal protein L22, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL22 PE=3 SV=2

 Score =  217 bits (553), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 104/162 (64%), Positives = 127/162 (78%), Gaps = 1/162 (0%)

Query: 54  HNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKG 113
           +N  V PPQQ  EE R A+VCH +  IKYSPDKMWYIA  +RGMSVD+AL QL +V KKG
Sbjct: 73  YNKTVHPPQQPDEEPRKAYVCHMRSNIKYSPDKMWYIAAFVRGMSVDEALKQLNFVLKKG 132

Query: 114 APFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCT 173
           A  +++TILEAQEMAV+ HNVE+KSNLWVAESFV K  V KGMRRHAR R G+VEYK+C 
Sbjct: 133 ATDVKETILEAQEMAVQRHNVEYKSNLWVAESFVGKGRVFKGMRRHARGRFGQVEYKHCH 192

Query: 174 YFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRYRKISSSL 215
           YFVRLEEG+PP++YY   PQT  ++ E +L+ +R RK+ +SL
Sbjct: 193 YFVRLEEGQPPEHYY-QEPQTPEQQYEHWLEQMRSRKVINSL 233

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9VXB5|RM22_DROME 39S ribosomal protein L22, mitochondrial OS=Drosophila melanogaster GN=mRpL22 PE=1 SV=2

 Score =  213 bits (543), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 106/196 (54%), Positives = 139/196 (70%), Gaps = 5/196 (2%)

Query: 24  PLITTASDLHTSQS----CLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPAFVCHFKEK 79
           P    +  LHT+ S    C K +       ++  +N  V PPQ+  EE R A+VCH +  
Sbjct: 39  PPALQSKSLHTAASAGMLCAKWNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSN 98

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
           IKYSPDKMWYIA  +RGMSVD+AL QL +V KKGA  +++TILEAQ++AV+ HNVE+KSN
Sbjct: 99  IKYSPDKMWYIAAFVRGMSVDEALKQLNFVLKKGATDVKETILEAQQIAVERHNVEYKSN 158

Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKL 199
           LW+AESFV K  V KG+RRHAR R G+VEYK+C YFVRLEEG+PP++YY   PQT  ++ 
Sbjct: 159 LWIAESFVGKGRVFKGVRRHARGRFGKVEYKHCHYFVRLEEGEPPQHYY-QEPQTPEQQY 217

Query: 200 EEYLQSLRYRKISSSL 215
           E +++ +R RKI +SL
Sbjct: 218 ESWMEQMRSRKIINSL 233

Drosophila melanogaster (taxid: 7227)

>sp|P0C2C0|RM22_RAT 39S ribosomal protein L22, mitochondrial OS=Rattus norvegicus GN=Mrpl22 PE=1 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/204 (47%), Positives = 129/204 (63%), Gaps = 6/204 (2%)

Query: 15  LNSNGKLFLP---LITTASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPA 71
           L   G L++P   + TT       QSC+  S +     R+ + N +V+PPQ  GE RRPA
Sbjct: 6   LRELGALWVPNLRIWTTQMLRVLPQSCIHTSTSLDISRRWEKKNKIVYPPQLPGEPRRPA 65

Query: 72  FVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKD 131
            + H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+D
Sbjct: 66  EIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAQIIKEVLLEAQDMAVRD 125

Query: 132 HNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTG 191
           HNVEF+SNL +AES   +   +K +R H R R G +E  YC YFV+L EG PP+      
Sbjct: 126 HNVEFRSNLHIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPRP---EA 182

Query: 192 PQTGPEKLEEYLQSLRYRKISSSL 215
           P+T  +  +EY+Q LR R I  +L
Sbjct: 183 PRTAVDHAKEYIQQLRSRTIIHTL 206

Rattus norvegicus (taxid: 10116)

>sp|Q9NWU5|RM22_HUMAN 39S ribosomal protein L22, mitochondrial OS=Homo sapiens GN=MRPL22 PE=1 SV=1

 Score =  169 bits (429), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 98/205 (47%), Positives = 132/205 (64%), Gaps = 13/205 (6%)

Query: 12  LHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPR-FTRHNNVVFPPQQEGEERRP 70
           +H L S GKL L ++   S +HTS        A +++ R + + N +V+PPQ  GE RRP
Sbjct: 14  IHNLRSRGKLALGVLPQ-SYIHTS--------ASLDISRKWEKKNKIVYPPQLPGEPRRP 64

Query: 71  AFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVK 130
           A + H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+
Sbjct: 65  AEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVR 124

Query: 131 DHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWT 190
           DHNVEF+SNL++AES   +   +K +R H R R G +E  YC YFV+L EG PP      
Sbjct: 125 DHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPP---E 181

Query: 191 GPQTGPEKLEEYLQSLRYRKISSSL 215
            P+T     +EY+Q LR R I  +L
Sbjct: 182 PPKTAVAHAKEYIQQLRSRTIVHTL 206

Homo sapiens (taxid: 9606)

>sp|Q3SZX5|RM22_BOVIN 39S ribosomal protein L22, mitochondrial OS=Bos taurus GN=MRPL22 PE=1 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 129/201 (64%), Gaps = 13/201 (6%)

Query: 16  NSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPR-FTRHNNVVFPPQQEGEERRPAFVC 74
           N  GKL L ++   S +HTS        A +E+ R + + N +V+PPQ  GE RRPA + 
Sbjct: 16  NLRGKLALGILPQ-SHIHTS--------ASLEISRKWEKKNKIVYPPQLPGEPRRPAEIY 66

Query: 75  HFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNV 134
           H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+DHNV
Sbjct: 67  HCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFSDKKGAQIIKEVLLEAQDMAVRDHNV 126

Query: 135 EFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQT 194
           EF+SNL++AES   +   +K +R H R R G +E  +C YFV+L EG PP       P+T
Sbjct: 127 EFRSNLYIAESTSGRGQYLKRIRYHGRGRFGIMEKVFCHYFVKLVEGPPPPP---EAPKT 183

Query: 195 GPEKLEEYLQSLRYRKISSSL 215
                +EY+Q LR R I  +L
Sbjct: 184 AVTHAKEYIQELRNRTIIHAL 204

Bos taurus (taxid: 9913)

>sp|Q0VFH6|RM22_XENTR 39S ribosomal protein L22, mitochondrial OS=Xenopus tropicalis GN=mrpl22 PE=2 SV=1

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/188 (49%), Positives = 123/188 (65%), Gaps = 10/188 (5%)

Query: 34  TSQSCLKKSLAEIE-VPRFTRH----NNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMW 88
           T+  CL +S      V   +RH    N +V+PPQ   E RRPA V H +++IKYS DKMW
Sbjct: 21  TASGCLPQSCVHTSAVLERSRHWEMKNRIVYPPQLPDEPRRPAEVYHCRKQIKYSKDKMW 80

Query: 89  YIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVL 148
           Y+A LIRGMSVDQA+ QL +  KKGA  +++ +LEAQ++AV++HNVEFKSNL+VAESF  
Sbjct: 81  YLAKLIRGMSVDQAIAQLEFNDKKGAKIMKEVLLEAQDLAVRNHNVEFKSNLYVAESFSN 140

Query: 149 KDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKP-PKNYYWTGPQTGPEKLEEYLQSLR 207
           K   +K +R H R   G ++  YC YFV+L EG P PK      P TG ++ +EY+Q LR
Sbjct: 141 KGKYLKRIRYHGRGMFGIMDKVYCHYFVKLVEGPPSPKE----EPMTGFQQAKEYVQQLR 196

Query: 208 YRKISSSL 215
            R I+  L
Sbjct: 197 SRTITHGL 204

Xenopus tropicalis (taxid: 8364)

>sp|Q5RAH3|RM22_PONAB 39S ribosomal protein L22, mitochondrial OS=Pongo abelii GN=MRPL22 PE=2 SV=1

 Score =  164 bits (414), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 96/210 (45%), Positives = 131/210 (62%), Gaps = 13/210 (6%)

Query: 7   LSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPR-FTRHNNVVFPPQQEG 65
           L    +H L S G+L   ++   S +HTS        A +++ R + + N +V+PPQ  G
Sbjct: 9   LGALWIHNLRSRGRLAWGVLPQ-SYVHTS--------ASLDISRKWEKKNKIVYPPQLPG 59

Query: 66  EERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQ 125
           E RRPA + H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ
Sbjct: 60  EPRRPAEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQ 119

Query: 126 EMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPK 185
           +MAV+DHNVEF+SNL++AES   +   +K +R H R R G +E  YC YFV+L EG PP 
Sbjct: 120 DMAVRDHNVEFRSNLYIAESTSGRGQYLKRIRYHGRGRFGIMERVYCHYFVKLVEGPPPP 179

Query: 186 NYYWTGPQTGPEKLEEYLQSLRYRKISSSL 215
                 P+      +EY+Q LR R I  +L
Sbjct: 180 P---EPPKMAVAHAKEYIQQLRSRTIIHTL 206

Pongo abelii (taxid: 9601)

>sp|Q8BU88|RM22_MOUSE 39S ribosomal protein L22, mitochondrial OS=Mus musculus GN=Mrpl22 PE=2 SV=1

 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 121/180 (67%), Gaps = 5/180 (2%)

Query: 37  SCLKKSLAEIEVPR-FTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIR 95
           SC+  S A +++ R + + N +V+PPQ  GE RRPA + H + +IKYS DKMWY+A +IR
Sbjct: 31  SCIHTS-ASLDISRKWEKKNKIVYPPQLPGEPRRPAEIYHCRRQIKYSKDKMWYLAKMIR 89

Query: 96  GMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKG 155
           GMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+DHNVEF+SNL +AES   +   +K 
Sbjct: 90  GMSIDQALAQLEFNDKKGAQIIKEVLLEAQDMAVRDHNVEFRSNLHIAESTSGRGQCLKR 149

Query: 156 MRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRYRKISSSL 215
           +R H R R G +E  YC YFV+L EG PP       P+T  +  ++Y+Q LR R I  +L
Sbjct: 150 IRYHGRGRFGIMEKVYCHYFVKLVEGPPPPP---EVPKTAVDHAKDYIQQLRSRTIIHTL 206

Mus musculus (taxid: 10090)

>sp|A6U864|RL22_SINMW 50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) GN=rplV PE=3 SV=1

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 3/105 (2%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
           I+ SP K+  +A LIRG  VD+AL +L +  K+ A  +R T+  A   A  +H+++  S 
Sbjct: 22  IRVSPQKLNLVAALIRGKKVDRALAELEFSRKRIAGTVRKTLESAIANAENNHDLDVDS- 80

Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRVE--YKYCTYFVRLEEGK 182
           L VAE+FV K IV+K      R R  RVE  + + T  VR  E K
Sbjct: 81  LIVAEAFVGKSIVMKRFHARGRGRASRVEKPFAHLTIVVREVEAK 125

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Sinorhizobium medicae (strain WSM419) (taxid: 366394)

>sp|Q92QG5|RL22_RHIME 50S ribosomal protein L22 OS=Rhizobium meliloti (strain 1021) GN=rplV PE=3 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 3/105 (2%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
           I+ SP K+  +A LIRG  VD+AL +L +  K+ A  ++ T+  A   A  +H+++  S 
Sbjct: 22  IRVSPQKLNLVAALIRGKKVDRALAELEFSRKRIAGTVKKTLESAIANAENNHDLDVDS- 80

Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRVE--YKYCTYFVRLEEGK 182
           L VAE+FV K IV+K      R R  RVE  + + T  VR  E K
Sbjct: 81  LIVAEAFVGKSIVMKRFHARGRGRASRVEKPFAHLTIVVREVEAK 125

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Rhizobium meliloti (strain 1021) (taxid: 266834)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
350423607	212	PREDICTED: 39S ribosomal protein L22, mi	0.944	0.957	0.549	5e-60
240849409	219	39S ribosomal protein L22, mitochondrial	0.869	0.853	0.587	1e-59
332019964	222	39S ribosomal protein L22, mitochondrial	0.874	0.846	0.578	3e-59
340727668	211	PREDICTED: 39S ribosomal protein L22, mi	0.939	0.957	0.530	7e-59
340727672	219	PREDICTED: 39S ribosomal protein L22, mi	0.939	0.922	0.530	7e-59
357607251	203	ribosomal protein L22 [Danaus plexippus]	0.851	0.901	0.602	1e-58
312376266	216	hypothetical protein AND_12937 [Anophele	0.865	0.861	0.577	6e-57
195130319	231	GI15151 [Drosophila mojavensis] gi|19390	0.934	0.870	0.550	8e-57
307181674	196	39S ribosomal protein L22, mitochondrial	0.851	0.933	0.567	3e-56
195457266	240	GK14752 [Drosophila willistoni] gi|19417	0.939	0.841	0.533	1e-55

>gi|350423607|ref|XP_003493534.1| PREDICTED: 39S ribosomal protein L22, mitochondrial-like isoform 1 [Bombus impatiens] gi|350423610|ref|XP_003493535.1| PREDICTED: 39S ribosomal protein L22, mitochondrial-like isoform 2 [Bombus impatiens]

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/211 (54%), Positives = 148/211 (70%), Gaps = 8/211 (3%)

Query: 5   RILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQE 64
           R +SN + +  NSN          +S    S +  K    E     F ++N VVFPPQ+ 
Sbjct: 10  RFISNKIFNANNSN--------CLSSIQQRSYNWYKDEEEEETNKGFLKYNKVVFPPQKP 61

Query: 65  GEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEA 124
           GEE+RP +VCH K+ IKYSP  MWYIAC +RGMSVD+A+ QL ++ KKGA   ++ ILEA
Sbjct: 62  GEEKRPGYVCHVKKFIKYSPLNMWYIACFVRGMSVDEAIKQLSFLKKKGAAIAKEVILEA 121

Query: 125 QEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPP 184
           Q MAV++HN+EFKSNLWVAESF  K I+IKG+RRHAR R+G V Y+YC YFVRLEEGKPP
Sbjct: 122 QRMAVEEHNIEFKSNLWVAESFATKSIIIKGIRRHARGRIGIVHYRYCNYFVRLEEGKPP 181

Query: 185 KNYYWTGPQTGPEKLEEYLQSLRYRKISSSL 215
           K+YY   P+TG E LEE+++ +R RKI +SL
Sbjct: 182 KHYYQPAPKTGEEWLEEWMEQMRTRKIYNSL 212

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849409|ref|NP_001155454.1| 39S ribosomal protein L22, mitochondrial [Acyrthosiphon pisum] gi|239792364|dbj|BAH72534.1| ACYPI002040 [Acyrthosiphon pisum]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/189 (58%), Positives = 142/189 (75%), Gaps = 2/189 (1%)

Query: 27  TTASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDK 86
           T  +D  TS   +K +  + E  R+  +N+V++PPQ+ GEERRPAFVCH K  IKYSP K
Sbjct: 33  TPKTDFSTSS--IKLAGTKDEPTRWLSYNDVIYPPQEPGEERRPAFVCHQKLNIKYSPKK 90

Query: 87  MWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESF 146
           MWY+A  +RGMSVD+AL QL  V +KGA  ++DTILEAQ++A++ HNVEFK+NLW+AESF
Sbjct: 91  MWYVASFVRGMSVDEALKQLPLVGRKGATIVKDTILEAQQLAIEKHNVEFKTNLWIAESF 150

Query: 147 VLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSL 206
             K  VIKGMRRHAR+RMG V Y+YC YFVRLEEG PP+NYY++ P+TGP  L  ++  +
Sbjct: 151 CGKGPVIKGMRRHARMRMGEVMYRYCHYFVRLEEGTPPENYYYSWPKTGPALLAHWVDEV 210

Query: 207 RYRKISSSL 215
           R RKI  SL
Sbjct: 211 RDRKIQGSL 219

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019964|gb|EGI60424.1| 39S ribosomal protein L22, mitochondrial [Acromyrmex echinatior]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 141/190 (74%), Gaps = 2/190 (1%)

Query: 27  TTASDLHTSQSCLKKSLAEIEVP-RFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPD 85
           T   ++H S  C +  L++   P RF  +N  VFPPQ+ GEERRPA+VCH K  IKYSP 
Sbjct: 34  TPTCNVHISAIC-RTDLSKYNTPTRFLDYNKTVFPPQKPGEERRPAYVCHMKANIKYSPK 92

Query: 86  KMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAES 145
           KMWYIA  +RGM+VD+A+ QL ++ KKGA   ++ ILEAQ +AV++HNVEFKSNLWVAES
Sbjct: 93  KMWYIASFVRGMTVDEAVKQLSFMYKKGAEIAKEVILEAQRLAVEEHNVEFKSNLWVAES 152

Query: 146 FVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQS 205
           F  K IVIKG+RRHA+ RMG + Y+YC Y+VRLEEG PPK+YY   P+TG E L ++++ 
Sbjct: 153 FSTKGIVIKGIRRHAKARMGVIHYRYCHYYVRLEEGPPPKHYYLPHPKTGEELLNDWMKQ 212

Query: 206 LRYRKISSSL 215
           LR RKI +SL
Sbjct: 213 LRMRKIPNSL 222

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727668|ref|XP_003402161.1| PREDICTED: 39S ribosomal protein L22, mitochondrial-like isoform 1 [Bombus terrestris] gi|340727670|ref|XP_003402162.1| PREDICTED: 39S ribosomal protein L22, mitochondrial-like isoform 2 [Bombus terrestris]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 112/211 (53%), Positives = 147/211 (69%), Gaps = 9/211 (4%)

Query: 5   RILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQE 64
           R +SN + +  NSN           S++        K   E     F ++N ++FPPQ+ 
Sbjct: 10  RFISNKIFNAENSN---------CLSNIQQRSYNWHKDKEEESNRGFLKYNKIIFPPQKP 60

Query: 65  GEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEA 124
           GEE+RP +VCH K+ IKYSP  MWYIAC +RGMSVD+A+ QL ++ KKGA   ++ ILEA
Sbjct: 61  GEEKRPGYVCHVKKFIKYSPLNMWYIACFVRGMSVDEAIKQLSFLKKKGAVIAKEVILEA 120

Query: 125 QEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPP 184
           Q MAV++HN+EFKSNLWVAESF  K ++IKGMRRHA+ R+G V Y+YC YFVRLEEGKPP
Sbjct: 121 QRMAVEEHNIEFKSNLWVAESFATKALIIKGMRRHAKGRIGIVHYRYCHYFVRLEEGKPP 180

Query: 185 KNYYWTGPQTGPEKLEEYLQSLRYRKISSSL 215
           K+YY   P+TG E LEE+++ +R RKI +SL
Sbjct: 181 KHYYQPAPKTGEELLEEWMEQMRTRKIYNSL 211

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727672|ref|XP_003402163.1| PREDICTED: 39S ribosomal protein L22, mitochondrial-like isoform 3 [Bombus terrestris]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 112/211 (53%), Positives = 147/211 (69%), Gaps = 9/211 (4%)

Query: 5   RILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQE 64
           R +SN + +  NSN           S++        K   E     F ++N ++FPPQ+ 
Sbjct: 18  RFISNKIFNAENSN---------CLSNIQQRSYNWHKDKEEESNRGFLKYNKIIFPPQKP 68

Query: 65  GEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEA 124
           GEE+RP +VCH K+ IKYSP  MWYIAC +RGMSVD+A+ QL ++ KKGA   ++ ILEA
Sbjct: 69  GEEKRPGYVCHVKKFIKYSPLNMWYIACFVRGMSVDEAIKQLSFLKKKGAVIAKEVILEA 128

Query: 125 QEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPP 184
           Q MAV++HN+EFKSNLWVAESF  K ++IKGMRRHA+ R+G V Y+YC YFVRLEEGKPP
Sbjct: 129 QRMAVEEHNIEFKSNLWVAESFATKALIIKGMRRHAKGRIGIVHYRYCHYFVRLEEGKPP 188

Query: 185 KNYYWTGPQTGPEKLEEYLQSLRYRKISSSL 215
           K+YY   P+TG E LEE+++ +R RKI +SL
Sbjct: 189 KHYYQPAPKTGEELLEEWMEQMRTRKIYNSL 219

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357607251|gb|EHJ65406.1| ribosomal protein L22 [Danaus plexippus]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 112/186 (60%), Positives = 145/186 (77%), Gaps = 3/186 (1%)

Query: 30  SDLHTSQSCLKKSLAEIEVP-RFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMW 88
           S+LHTSQ  L+ + ++  +P RF  +N  ++PPQ+ GEE RPAFVCH K  IKYSP+K+W
Sbjct: 19  SNLHTSQ--LRFAWSKDNLPKRFLEYNKKIYPPQEIGEEPRPAFVCHQKTNIKYSPEKLW 76

Query: 89  YIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVL 148
           YIA  IRGM++D+AL QL +V KKGA F+RDTILEAQ +A+ +HNVEFKSNLW+AESF  
Sbjct: 77  YIAVFIRGMTIDEALKQLSFVNKKGAGFVRDTILEAQNLAITEHNVEFKSNLWIAESFSG 136

Query: 149 KDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRY 208
           K  VIKG+RRHAR RMG V Y+Y  YFVRLEEGKPPK+YY   P T  ++L+++L+++R 
Sbjct: 137 KGTVIKGVRRHARGRMGEVRYQYSHYFVRLEEGKPPKDYYNLNPLTPQQQLDKWLENMRE 196

Query: 209 RKISSS 214
           RKI +S
Sbjct: 197 RKIINS 202

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312376266|gb|EFR23407.1| hypothetical protein AND_12937 [Anopheles darlingi]

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 139/187 (74%), Gaps = 1/187 (0%)

Query: 30  SDLHTSQSCLKKSLAEIEVP-RFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMW 88
           ++LHT+ +  K        P R+ ++N V++ PQ   EE RPA+VCH K  IKYSP KMW
Sbjct: 30  ANLHTTSALAKNWNGHNTGPQRWLQYNKVIYQPQTPTEEPRPAYVCHQKTNIKYSPKKMW 89

Query: 89  YIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVL 148
           Y+A  +RGMSVD+AL QL +V KKGA ++++ ILEA EMAVK HNVEF++NLWVAESF  
Sbjct: 90  YVAAFVRGMSVDEALKQLSFVDKKGASYVKEAILEAIEMAVKRHNVEFRTNLWVAESFCG 149

Query: 149 KDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRY 208
           K  V KG+RRHAR R G VEYK+C YFVRLEEG PP++YY   PQTG ++LEE+L ++R 
Sbjct: 150 KGRVFKGIRRHARGRSGEVEYKHCHYFVRLEEGSPPEHYYQPAPQTGEQQLEEWLGAMRR 209

Query: 209 RKISSSL 215
           RK++SSL
Sbjct: 210 RKVTSSL 216

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195130319|ref|XP_002009599.1| GI15151 [Drosophila mojavensis] gi|193908049|gb|EDW06916.1| GI15151 [Drosophila mojavensis]

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 115/209 (55%), Positives = 148/209 (70%), Gaps = 8/209 (3%)

Query: 15  LNSNGKLFL--PLITTASD---LHTSQS---CLKKSLAEIEVPRFTRHNNVVFPPQQEGE 66
           + S  KL    P+IT   D   +HT+ S   C K +       ++  +N  V PPQ+  E
Sbjct: 23  VTSAAKLLAMPPVITQNVDCCGVHTAASGGLCTKWNKHNYGPRKWLEYNKTVHPPQEADE 82

Query: 67  ERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQE 126
           E R A+VCH +  IKYSPDKMWYIA  +RGMSVD+AL QL +V KKGA  +R+TILEAQ+
Sbjct: 83  EPRKAYVCHMRSNIKYSPDKMWYIAAFVRGMSVDEALKQLNFVLKKGATDVRETILEAQQ 142

Query: 127 MAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKN 186
           MAV+ HNVE+KSNLW+AESFV K  V KGMRRHAR R GRVEYK+C YF+RLEEG+PP++
Sbjct: 143 MAVERHNVEYKSNLWIAESFVGKGRVFKGMRRHARGRFGRVEYKHCHYFLRLEEGEPPQH 202

Query: 187 YYWTGPQTGPEKLEEYLQSLRYRKISSSL 215
           YY   PQT  ++LE++L+ +R RK+ +SL
Sbjct: 203 YYLPEPQTPEQQLEQWLEQMRSRKVINSL 231

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181674|gb|EFN69177.1| 39S ribosomal protein L22, mitochondrial [Camponotus floridanus]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 135/185 (72%), Gaps = 2/185 (1%)

Query: 31  DLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMWYI 90
             H S  C K +    ++  F  HN  +FPPQ+  EERRPA+VCH KE IKYSP KMWYI
Sbjct: 14  SFHLSSICNKHNFQGPKL--FLSHNKKIFPPQKPDEERRPAYVCHMKENIKYSPKKMWYI 71

Query: 91  ACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKD 150
           A  +RGMSVD+A+ QL ++  KGA   +  ILEAQ +AV++HNVEFKSNLWVAESF  K 
Sbjct: 72  AAFVRGMSVDEAVKQLSFLHMKGAEIAKQIILEAQRLAVEEHNVEFKSNLWVAESFSTKG 131

Query: 151 IVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRYRK 210
           +VIKG+RRHA+ R G + Y+YC YFVRLEEG PPK+YY   P++G E LE++L+++  RK
Sbjct: 132 VVIKGLRRHAKYRRGIIHYRYCHYFVRLEEGPPPKHYYLPHPKSGEELLEDWLKNMHMRK 191

Query: 211 ISSSL 215
           +S+SL
Sbjct: 192 VSNSL 196

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195457266|ref|XP_002075499.1| GK14752 [Drosophila willistoni] gi|194171584|gb|EDW86485.1| GK14752 [Drosophila willistoni]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/210 (53%), Positives = 146/210 (69%), Gaps = 8/210 (3%)

Query: 10  CVLHQLNSNGKLFLPLITTASDLHTSQS----CLKKSLAEIEVPRFTRHNNVVFPPQQEG 65
            V H + + G++    ++ + DLHT+      C K +       ++  +N  V PPQQ  
Sbjct: 35  AVHHPMLTGGQVS---VSASRDLHTAAGSGGLCAKWNKNNHGPRKWLEYNKTVHPPQQND 91

Query: 66  EERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQ 125
           EE R A+VCH +  IKYSPDKMWYIA  +RGMSVD+AL QL +V KKGA  +R+TILEAQ
Sbjct: 92  EEPRKAYVCHMRSNIKYSPDKMWYIAAFVRGMSVDEALKQLNFVLKKGATDVRETILEAQ 151

Query: 126 EMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPK 185
           EMAV +HNVE+KSNLW+AESFV K  V KGMRRHAR R G VEYK+C YFVRLEEG+PP 
Sbjct: 152 EMAVHNHNVEYKSNLWIAESFVGKGRVFKGMRRHARGRYGHVEYKHCHYFVRLEEGEPPV 211

Query: 186 NYYWTGPQTGPEKLEEYLQSLRYRKISSSL 215
           +YY   PQT  ++ +++++ +R RKI +SL
Sbjct: 212 HYY-QEPQTPQQQYDQWMEQMRSRKIINSL 240

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
UNIPROTKB|Q29IK4	233	mRpL22 "39S ribosomal protein	0.748	0.690	0.641	8e-53
FB|FBgn0030786	233	mRpL22 "mitochondrial ribosoma	0.883	0.815	0.545	3.5e-52
UNIPROTKB|E7ESL0	212	MRPL22 "39S ribosomal protein	0.920	0.933	0.487	5.7e-43
ZFIN|ZDB-GENE-080303-28	209	mrpl22 "mitochondrial ribosoma	0.846	0.870	0.486	2.5e-42
UNIPROTKB|J3KQY1	232	MRPL22 "39S ribosomal protein	0.893	0.827	0.478	5.2e-42
UNIPROTKB|Q9NWU5	206	MRPL22 "39S ribosomal protein	0.893	0.932	0.478	5.2e-42
RGD|1309277	206	Mrpl22 "mitochondrial ribosoma	0.916	0.956	0.473	1.7e-41
UNIPROTKB|Q3SZX5	204	MRPL22 "39S ribosomal protein	0.874	0.921	0.477	4.6e-41
UNIPROTKB|Q5RAH3	206	MRPL22 "39S ribosomal protein	0.893	0.932	0.463	2.6e-40
MGI|MGI:1333794	206	Mrpl22 "mitochondrial ribosoma	0.813	0.849	0.488	6.8e-40

UNIPROTKB|Q29IK4 mRpL22 "39S ribosomal protein L22, mitochondrial" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 104/162 (64%), Positives = 127/162 (78%)

Query:    54 HNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKG 113
             +N  V PPQQ  EE R A+VCH +  IKYSPDKMWYIA  +RGMSVD+AL QL +V KKG
Sbjct:    73 YNKTVHPPQQPDEEPRKAYVCHMRSNIKYSPDKMWYIAAFVRGMSVDEALKQLNFVLKKG 132

Query:   114 APFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCT 173
             A  +++TILEAQEMAV+ HNVE+KSNLWVAESFV K  V KGMRRHAR R G+VEYK+C 
Sbjct:   133 ATDVKETILEAQEMAVQRHNVEYKSNLWVAESFVGKGRVFKGMRRHARGRFGQVEYKHCH 192

Query:   174 YFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRYRKISSSL 215
             YFVRLEEG+PP++YY   PQT  ++ E +L+ +R RK+ +SL
Sbjct:   193 YFVRLEEGQPPEHYYQE-PQTPEQQYEHWLEQMRSRKVINSL 233

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISS

GO:0008150 "biological_process" evidence=ND

FB|FBgn0030786 mRpL22 "mitochondrial ribosomal protein L22" [Drosophila melanogaster (taxid:7227)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 107/196 (54%), Positives = 141/196 (71%)

Query:    24 PLITTASDLHTSQS----CLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPAFVCHFKEK 79
             P + + S LHT+ S    C K +       ++  +N  V PPQ+  EE R A+VCH +  
Sbjct:    40 PALQSKS-LHTAASAGMLCAKWNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSN 98

Query:    80 IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
             IKYSPDKMWYIA  +RGMSVD+AL QL +V KKGA  +++TILEAQ++AV+ HNVE+KSN
Sbjct:    99 IKYSPDKMWYIAAFVRGMSVDEALKQLNFVLKKGATDVKETILEAQQIAVERHNVEYKSN 158

Query:   140 LWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKL 199
             LW+AESFV K  V KG+RRHAR R G+VEYK+C YFVRLEEG+PP++YY   PQT  ++ 
Sbjct:   159 LWIAESFVGKGRVFKGVRRHARGRFGKVEYKHCHYFVRLEEGEPPQHYYQE-PQTPEQQY 217

Query:   200 EEYLQSLRYRKISSSL 215
             E +++ +R RKI +SL
Sbjct:   218 ESWMEQMRSRKIINSL 233

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

UNIPROTKB|E7ESL0 MRPL22 "39S ribosomal protein L22, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 100/205 (48%), Positives = 134/205 (65%)

Query:    12 LHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPR-FTRHNNVVFPPQQEGEERRP 70
             +H L S GKL L L++  S L   QS +  S A +++ R + + N +V+PPQ  GE RRP
Sbjct:    14 IHNLRSRGKLALGLLSFHSVL--PQSYIHTS-ASLDISRKWEKKNKIVYPPQLPGEPRRP 70

Query:    71 AFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVK 130
             A + H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+
Sbjct:    71 AEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVR 130

Query:   131 DHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWT 190
             DHNVEF+SNL++AES   +   +K +R H R R G +E  YC YFV+L EG PP      
Sbjct:   131 DHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPP---E 187

Query:   191 GPQTGPEKLEEYLQSLRYRKISSSL 215
              P+T     +EY+Q LR R I  +L
Sbjct:   188 PPKTAVAHAKEYIQQLRSRTIVHTL 212

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

ZFIN|ZDB-GENE-080303-28 mrpl22 "mitochondrial ribosomal protein L22" [Danio rerio (taxid:7955)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 91/187 (48%), Positives = 128/187 (68%)

Query:    29 ASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMW 88
             +S   +  SCL  S +E+    + R N +V+PPQQ+ E RRPA +CH + +IKYS DKMW
Sbjct:    28 SSSTFSQVSCLHTS-SELNNKNWERRNRIVYPPQQKDEPRRPAEICHSRRQIKYSKDKMW 86

Query:    89 YIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVL 148
             Y+A LIRGM++DQAL+QL +  KKGA  IR+ +LEAQ+MAV++HNVE+KSNL++AES+  
Sbjct:    87 YLAKLIRGMTIDQALVQLEFNDKKGAKIIREVLLEAQDMAVRNHNVEYKSNLYIAESYSG 146

Query:   149 KDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRY 208
             K   +K +R H R   G +E  YC YFV+L EG PP+       +TG ++ +EY++ L+ 
Sbjct:   147 KGKYLKRIRYHGRGMFGIMEKVYCHYFVKLVEGVPPQMQ----TKTGFDQAKEYVEQLKN 202

Query:   209 RKISSSL 215
             R I  SL
Sbjct:   203 RTIIYSL 209

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|J3KQY1 MRPL22 "39S ribosomal protein L22, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 98/205 (47%), Positives = 132/205 (64%)

Query:    12 LHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPR-FTRHNNVVFPPQQEGEERRP 70
             +H L S GKL L ++   S +HTS        A +++ R + + N +V+PPQ  GE RRP
Sbjct:    40 IHNLRSRGKLALGVLPQ-SYIHTS--------ASLDISRKWEKKNKIVYPPQLPGEPRRP 90

Query:    71 AFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVK 130
             A + H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+
Sbjct:    91 AEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVR 150

Query:   131 DHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWT 190
             DHNVEF+SNL++AES   +   +K +R H R R G +E  YC YFV+L EG PP      
Sbjct:   151 DHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPP---E 207

Query:   191 GPQTGPEKLEEYLQSLRYRKISSSL 215
              P+T     +EY+Q LR R I  +L
Sbjct:   208 PPKTAVAHAKEYIQQLRSRTIVHTL 232

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

UNIPROTKB|Q9NWU5 MRPL22 "39S ribosomal protein L22, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 98/205 (47%), Positives = 132/205 (64%)

Query:    12 LHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPR-FTRHNNVVFPPQQEGEERRP 70
             +H L S GKL L ++   S +HTS        A +++ R + + N +V+PPQ  GE RRP
Sbjct:    14 IHNLRSRGKLALGVLPQ-SYIHTS--------ASLDISRKWEKKNKIVYPPQLPGEPRRP 64

Query:    71 AFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVK 130
             A + H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+
Sbjct:    65 AEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVR 124

Query:   131 DHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWT 190
             DHNVEF+SNL++AES   +   +K +R H R R G +E  YC YFV+L EG PP      
Sbjct:   125 DHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPP---E 181

Query:   191 GPQTGPEKLEEYLQSLRYRKISSSL 215
              P+T     +EY+Q LR R I  +L
Sbjct:   182 PPKTAVAHAKEYIQQLRSRTIVHTL 206

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS

RGD|1309277 Mrpl22 "mitochondrial ribosomal protein L22" [Rattus norvegicus (taxid:10116)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 97/205 (47%), Positives = 132/205 (64%)

Query:    15 LNSNGKLFLP--LITTASDLHT-SQSCLKKSLAEIEVPR-FTRHNNVVFPPQQEGEERRP 70
             L   G L++P   I T   L    QSC+  S + +++ R + + N +V+PPQ  GE RRP
Sbjct:     6 LRELGALWVPNLRIWTTQMLRVLPQSCIHTSTS-LDISRRWEKKNKIVYPPQLPGEPRRP 64

Query:    71 AFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVK 130
             A + H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+
Sbjct:    65 AEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAQIIKEVLLEAQDMAVR 124

Query:   131 DHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWT 190
             DHNVEF+SNL +AES   +   +K +R H R R G +E  YC YFV+L EG PP+     
Sbjct:   125 DHNVEFRSNLHIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPRP---E 181

Query:   191 GPQTGPEKLEEYLQSLRYRKISSSL 215
              P+T  +  +EY+Q LR R I  +L
Sbjct:   182 APRTAVDHAKEYIQQLRSRTIIHTL 206

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

UNIPROTKB|Q3SZX5 MRPL22 "39S ribosomal protein L22, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 96/201 (47%), Positives = 129/201 (64%)

Query:    16 NSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPR-FTRHNNVVFPPQQEGEERRPAFVC 74
             N  GKL L ++   S +HTS        A +E+ R + + N +V+PPQ  GE RRPA + 
Sbjct:    16 NLRGKLALGILPQ-SHIHTS--------ASLEISRKWEKKNKIVYPPQLPGEPRRPAEIY 66

Query:    75 HFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNV 134
             H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+DHNV
Sbjct:    67 HCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFSDKKGAQIIKEVLLEAQDMAVRDHNV 126

Query:   135 EFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQT 194
             EF+SNL++AES   +   +K +R H R R G +E  +C YFV+L EG PP       P+T
Sbjct:   127 EFRSNLYIAESTSGRGQYLKRIRYHGRGRFGIMEKVFCHYFVKLVEGPPPPP---EAPKT 183

Query:   195 GPEKLEEYLQSLRYRKISSSL 215
                  +EY+Q LR R I  +L
Sbjct:   184 AVTHAKEYIQELRNRTIIHAL 204

GO:0005739 "mitochondrion" evidence=IDA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q5RAH3 MRPL22 "39S ribosomal protein L22, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 95/205 (46%), Positives = 130/205 (63%)

Query:    12 LHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIEVPR-FTRHNNVVFPPQQEGEERRP 70
             +H L S G+L   ++   S +HTS        A +++ R + + N +V+PPQ  GE RRP
Sbjct:    14 IHNLRSRGRLAWGVLPQ-SYVHTS--------ASLDISRKWEKKNKIVYPPQLPGEPRRP 64

Query:    71 AFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVK 130
             A + H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+
Sbjct:    65 AEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVR 124

Query:   131 DHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWT 190
             DHNVEF+SNL++AES   +   +K +R H R R G +E  YC YFV+L EG PP      
Sbjct:   125 DHNVEFRSNLYIAESTSGRGQYLKRIRYHGRGRFGIMERVYCHYFVKLVEGPPPPP---E 181

Query:   191 GPQTGPEKLEEYLQSLRYRKISSSL 215
              P+      +EY+Q LR R I  +L
Sbjct:   182 PPKMAVAHAKEYIQQLRSRTIIHTL 206

GO:0005739 "mitochondrion" evidence=ISS

MGI|MGI:1333794 Mrpl22 "mitochondrial ribosomal protein L22" [Mus musculus (taxid:10090)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 88/180 (48%), Positives = 121/180 (67%)

Query:    37 SCLKKSLAEIEVPR-FTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIR 95
             SC+  S A +++ R + + N +V+PPQ  GE RRPA + H + +IKYS DKMWY+A +IR
Sbjct:    31 SCIHTS-ASLDISRKWEKKNKIVYPPQLPGEPRRPAEIYHCRRQIKYSKDKMWYLAKMIR 89

Query:    96 GMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKG 155
             GMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+DHNVEF+SNL +AES   +   +K 
Sbjct:    90 GMSIDQALAQLEFNDKKGAQIIKEVLLEAQDMAVRDHNVEFRSNLHIAESTSGRGQCLKR 149

Query:   156 MRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSLRYRKISSSL 215
             +R H R R G +E  YC YFV+L EG PP       P+T  +  ++Y+Q LR R I  +L
Sbjct:   150 IRYHGRGRFGIMEKVYCHYFVKLVEGPPPPPEV---PKTAVDHAKDYIQQLRSRTIIHTL 206

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NWU5	RM22_HUMAN	No assigned EC number	0.4780	0.8930	0.9320	yes	N/A
Q0VFH6	RM22_XENTR	No assigned EC number	0.4946	0.8279	0.8725	yes	N/A
Q3SZX5	RM22_BOVIN	No assigned EC number	0.4776	0.8744	0.9215	yes	N/A
Q29IK4	RM22_DROPS	No assigned EC number	0.6419	0.7488	0.6909	yes	N/A
Q5RAH3	RM22_PONAB	No assigned EC number	0.4571	0.9162	0.9563	yes	N/A
Q8BU88	RM22_MOUSE	No assigned EC number	0.4888	0.8139	0.8495	yes	N/A
P0C2C0	RM22_RAT	No assigned EC number	0.4705	0.9209	0.9611	yes	N/A
Q9VXB5	RM22_DROME	No assigned EC number	0.5408	0.8883	0.8197	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	215
cd00336	105	cd00336, Ribosomal_L22, Ribosomal protein L22/L17e	5e-25
pfam00237	105	pfam00237, Ribosomal_L22, Ribosomal protein L22p/L	5e-25
COG0091	120	COG0091, RplV, Ribosomal protein L22 [Translation,	2e-13
PRK00565	112	PRK00565, rplV, 50S ribosomal protein L22; Reviewe	6e-10
TIGR01044	103	TIGR01044, rplV_bact, ribosomal protein L22, bacte	9e-06

>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e

 Score = 93.7 bits (234), Expect = 5e-25
 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
           ++ SP K   +A LIRGMSVD+AL QL +V KK A  I   +  A+  A  +   +    
Sbjct: 8   LRISPKKARLVARLIRGMSVDEALAQLEFVPKKAAKIILKLLKSAEANAENNGLDD-PDK 66

Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRL 178
           L++    V K   +K  R  AR R   +  + C   V L
Sbjct: 67  LYIKHIQVNKGPTLKRRRPRARGRANPIRKRTCHITVVL 105

L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome. Length = 105

>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e

 Score = 93.7 bits (234), Expect = 5e-25
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 79  KIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKS 138
            I+ SP K   +A LIRG SV++AL  L +V KK A  I   +  A   A  +  ++   
Sbjct: 5   YIRISPKKARLVADLIRGKSVEEALAILEFVPKKAAKIILKLLKSAVANAENNKGLD-PD 63

Query: 139 NLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEE 180
           NL++ E FV K   +K  R  AR R   +  +     + L E
Sbjct: 64  NLYIKEIFVDKGPTLKRFRPRARGRATPIRKRTSHITIVLSE 105

This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Length = 105

>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 76  FKEKIKY---SPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDH 132
            K K +Y   SP K   +A LIRG  V +AL  L +V KK A  ++  +  A   A  + 
Sbjct: 11  AKAKARYLRISPKKARLVADLIRGKKVAEALAILEFVPKKAAKLVKKVLESAIANAENNK 70

Query: 133 NVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEE 180
            ++    L V+   V K  V+K     AR R  R+  +     V + E
Sbjct: 71  GLD-PDKLVVSHIAVDKGPVLKRFMPRARGRATRINKRTSHITVVVRE 117

Length = 120

>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed

 Score = 54.3 bits (132), Expect = 6e-10
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
           ++ SP K   +A LIRG  V++AL  L +  KK A  ++  +  A   A  +H ++   N
Sbjct: 10  VRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAENNHGLD-IDN 68

Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGK 182
           L V E++V +   +K  R  AR R  R+  +     V + E +
Sbjct: 69  LVVKEAYVDEGPTLKRFRPRARGRASRIRKRTSHITVVVAEKE 111

Length = 112

>gnl|CDD|130116 TIGR01044, rplV_bact, ribosomal protein L22, bacterial type

 Score = 42.9 bits (101), Expect = 9e-06
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFK-S 138
           ++ SP K   +A LIRG SV QAL  L +  KK AP I+  +  A  +A  +HN      
Sbjct: 6   VRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASA--IANAEHNYGLDAD 63

Query: 139 NLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFV 176
           NL V   FV +   +K +R  A+ R  R+  +     V
Sbjct: 64  NLVVVTIFVDEGPTLKRIRPRAKGRASRIRKRTSHITV 101

This model decribes bacterial and chloroplast ribosomal protein L22 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
KOG1711|consensus	218		100.0
PRK00565	112	rplV 50S ribosomal protein L22; Reviewed	100.0
CHL00034	117	rpl22 ribosomal protein L22	100.0
TIGR01044	103	rplV_bact ribosomal protein L22, bacterial type. T	100.0
COG0091	120	RplV Ribosomal protein L22 [Translation, ribosomal	100.0
PF00237	105	Ribosomal_L22: Ribosomal protein L22p/L17e; InterP	100.0
cd00336	105	Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17	100.0
TIGR01038	150	L22_arch ribosomal protein L22(archaeal)/L17(eukar	100.0
PRK04223	153	rpl22p 50S ribosomal protein L22P; Reviewed	100.0
PTZ00178	181	60S ribosomal protein L17; Provisional	100.0
PRK12279	311	50S ribosomal protein L22/unknown domain fusion pr	99.98
KOG3353|consensus	175		99.59

>KOG1711|consensus

Probab=100.00  E-value=1.2e-43  Score=304.16  Aligned_cols=175  Identities=39%  Similarity=0.593  Sum_probs=162.2

Q ss_pred             ccchhhhhhhhhcccCCCChhhhhhccceeCCCCCCCccCccceeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc
Q psy7141          29 ASDLHTSQSCLKKSLAEIEVPRFTRHNNVVFPPQQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY  108 (215)
Q Consensus        29 ~~~~ht~~~~~~~~~~~~~~~~w~~~n~~v~ppq~~~~~~r~~~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f  108 (215)
                      .+.+|++..       .+++++|+++|+++|||+.+.+|.+ .+|+||...|++|+||||.+|++||||+|+|||.||+|
T Consensus        36 ~s~i~s~~a-------l~~~~k~E~~~Ki~~~~~l~~~p~~-~eVya~~~~Ik~S~kK~~~l~~lirgm~v~~AL~Ql~~  107 (218)
T KOG1711|consen   36 VSDIESSPA-------LLGSEKWEERNKIVYPPQLPFEPKR-PEVYACSKSIKSSPKKVWLLARLIRGMSVEEALMQLEF  107 (218)
T ss_pred             ccchhhChh-------hcchHHHHHhccccCcccCCCCCcc-hhHHHHHHHHHhCHHHHHHHHHHHcCCCHHHHHHHhhc
Confidence            346666653       2579999999999999999999877 89999999999999999999999999999999999999


Q ss_pred             CcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEE-EEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCCCCCC
Q psy7141         109 VAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWV-AESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNY  187 (215)
Q Consensus       109 ~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I-~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~  187 (215)
                      ++||+|+.|.++|.+|.+||.++||+|. ++|+| +++++++|.++||+++|||||++++++++|||||+|+|+.++.++
T Consensus       108 s~kK~a~~i~~~l~~A~~nA~~~~gl~~-~~l~v~~~~t~~~g~~~Krl~~hargr~~ii~~~yvhi~v~L~e~s~~~~~  186 (218)
T KOG1711|consen  108 SDKKAAKTIAEVLLSARANAVHNHGLDP-DSLLVVAEATVGQGNELKRLKVHARGRFGIIRRPYVHIFVKLEEGSPPQQR  186 (218)
T ss_pred             chHHHHHHHHHHHHHHHhhhHHhcCCCc-cceEEEEeeecccchhhhheeeeccCcccceecceeeEEEEEeecCCCchh
Confidence            9999999999999999999999999995 66655 999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCchHHHHHHHHHhcccccccC
Q psy7141         188 YWTGPQTGPEKLEEYLQSLRYRKISSS  214 (215)
Q Consensus       188 y~~~~~~~~~~~~~~~~~~r~r~i~~~  214 (215)
                      |  ..+.++++.++|..+|++|.|-.|
T Consensus       187 ~--~~~~~~~~~~e~~~~l~~~pi~~~  211 (218)
T KOG1711|consen  187 Y--PGKKAKHHSSEYWQQLRSRPIYSS  211 (218)
T ss_pred             h--hhhhcchhcchhhhccCCcceEec
Confidence            5  478999999999999999988654

>PRK00565 rplV 50S ribosomal protein L22; Reviewed

Probab=100.00  E-value=4.2e-38  Score=247.51  Aligned_cols=109  Identities=28%  Similarity=0.368  Sum_probs=105.2

Q ss_pred             eeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCcc
Q psy7141          73 VCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIV  152 (215)
Q Consensus        73 v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~  152 (215)
                      +.+..+++++||+|+++||++||||+++||+.||+|+|+|+|+.|+++|+||.+||++++|+| +|+|||+++|||+|++
T Consensus         3 ~~A~~~~~~~SpkK~~~v~~~IrG~~v~~A~~~L~~~pkk~a~~i~k~L~sA~aNA~~~~g~d-~~~L~I~~~~v~~G~~   81 (112)
T PRK00565          3 AKAKARYVRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAENNHGLD-IDNLVVKEAYVDEGPT   81 (112)
T ss_pred             eEEEeCccccCHHHHHHHHHHHcCCcHHHHHHHHHHCcHhHHHHHHHHHHHHHHHHHhccCCC-hhHeEEEEEEECCCCc
Confidence            455699999999999999999999999999999999999999999999999999999889999 7999999999999999


Q ss_pred             cccccccCCCCcccccccceeEEEEEeeCC
Q psy7141         153 IKGMRRHARVRMGRVEYKYCTYFVRLEEGK  182 (215)
Q Consensus       153 lKRir~rArGRa~~i~k~~~HI~VvL~E~~  182 (215)
                      +||++||||||++++++++|||+|+|+|++
T Consensus        82 ~Kr~~~rArGR~~~i~k~~~hi~vvL~e~~  111 (112)
T PRK00565         82 LKRFRPRARGRASRIRKRTSHITVVVAEKE  111 (112)
T ss_pred             cCCCCCCcCCCCCccccCCccEEEEEEecC
Confidence            999999999999999999999999999965

>CHL00034 rpl22 ribosomal protein L22

Probab=100.00  E-value=1.1e-37  Score=247.30  Aligned_cols=108  Identities=22%  Similarity=0.278  Sum_probs=104.6

Q ss_pred             eeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCc
Q psy7141          72 FVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDI  151 (215)
Q Consensus        72 ~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~  151 (215)
                      ++++..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||.+||++++|+| +|+|||++++||+|+
T Consensus         9 ~~~A~~~~ir~SpkK~r~va~~IRG~~v~~A~~~L~~~pkk~a~~i~klL~sA~aNA~~~~gld-~d~L~I~~i~v~~G~   87 (117)
T CHL00034          9 EVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSAAANASHNMGLN-KANLFISKAEVDEGP   87 (117)
T ss_pred             eEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHccCCC-ccceEEEEEEECCCC
Confidence            4566699999999999999999999999999999999999999999999999999998889999 699999999999999


Q ss_pred             ccccccccCCCCcccccccceeEEEEEee
Q psy7141         152 VIKGMRRHARVRMGRVEYKYCTYFVRLEE  180 (215)
Q Consensus       152 ~lKRir~rArGRa~~i~k~~~HI~VvL~E  180 (215)
                      ++||++||||||++++++++|||+|+|+|
T Consensus        88 ~~KR~~prArGRa~~i~k~~sHI~Vvl~e  116 (117)
T CHL00034         88 TLKRFRPRAQGRSYPIKKPTCHITIVLKD  116 (117)
T ss_pred             ccCCCCcccCCCCCcccCCCccEEEEEec
Confidence            99999999999999999999999999987

>TIGR01044 rplV_bact ribosomal protein L22, bacterial type

Probab=100.00  E-value=1.6e-37  Score=241.17  Aligned_cols=102  Identities=31%  Similarity=0.381  Sum_probs=99.4

Q ss_pred             cccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCccccc
Q psy7141          76 FKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKG  155 (215)
Q Consensus        76 ~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKR  155 (215)
                      ..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||.+||++++|+| +|+|||+|++||+|+++||
T Consensus         2 ~~r~~r~SpkK~~~va~~IrG~~v~~A~~~L~f~pkk~a~~i~klL~sA~aNA~~~~~ld-~~~L~I~~~~v~~G~~~kr   80 (103)
T TIGR01044         2 KARFVRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASAIANAEHNYGLD-ADNLVVVTIFVDEGPTLKR   80 (103)
T ss_pred             cccccccCHHHHHHHHHHHcCCcHHHHHHHHhhCCHhHHHHHHHHHHHHHHHHHHccCCC-hHheEEEEEEECCCCcccC
Confidence            478999999999999999999999999999999999999999999999999998889999 7999999999999999999


Q ss_pred             ccccCCCCcccccccceeEEEEE
Q psy7141         156 MRRHARVRMGRVEYKYCTYFVRL  178 (215)
Q Consensus       156 ir~rArGRa~~i~k~~~HI~VvL  178 (215)
                      ++||||||++++++++|||+|+|
T Consensus        81 ~~~rarGRa~~i~k~~~hi~vvl  103 (103)
T TIGR01044        81 IRPRAKGRASRIRKRTSHITVVV  103 (103)
T ss_pred             CCCCCCCCCCcccCCCccEEEeC
Confidence            99999999999999999999986

This model decribes bacterial and chloroplast ribosomal protein L22.

>COG0091 RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-37  Score=247.78  Aligned_cols=112  Identities=28%  Similarity=0.333  Sum_probs=107.0

Q ss_pred             CccCccceeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEE
Q psy7141          65 GEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAE  144 (215)
Q Consensus        65 ~~~~r~~~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e  144 (215)
                      ..++++.     .+++++||+|+++||++||||++++|+.+|+|+|+|+|+.|.++|+||++||++++||| +|+|||.|
T Consensus         8 ~~~akA~-----~r~~riSpkk~r~Va~~IrG~~v~~A~~~L~~~pkKaa~~v~KvL~sA~aNAe~n~gLd-~d~L~V~~   81 (120)
T COG0091           8 EMEAKAK-----ARYLRISPKKARLVADLIRGKKVAEALAILEFVPKKAAKLVKKVLESAIANAENNKGLD-PDKLVVSH   81 (120)
T ss_pred             hhhhHhh-----hccCcCChHHHHHHHHHHcCCcHHHHHHHHHhChHHHHHHHHHHHHHHHhhHHhccCCC-hHHEEEEE
Confidence            3455666     99999999999999999999999999999999999999999999999999999889999 79999999


Q ss_pred             EEecCCcccccccccCCCCcccccccceeEEEEEeeCC
Q psy7141         145 SFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGK  182 (215)
Q Consensus       145 ~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~  182 (215)
                      ++||+|+++||++|||+||++++++++|||+|+|+|.+
T Consensus        82 i~v~~gp~lKR~~pRA~GRa~~i~k~tshItvvv~e~~  119 (120)
T COG0091          82 IAVDKGPVLKRFMPRARGRATRINKRTSHITVVVREKE  119 (120)
T ss_pred             EEeCCCceeeeecccccCccccccCCCceEEEEEeecC
Confidence            99999999999999999999999999999999999965

>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.1e-36  Score=234.16  Aligned_cols=104  Identities=37%  Similarity=0.490  Sum_probs=100.6

Q ss_pred             cccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCccccc
Q psy7141          76 FKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKG  155 (215)
Q Consensus        76 ~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKR  155 (215)
                      ..+++++||||++++|++||||+++||+.||+|+|+|+|+.|+++|++|.+||++++|+| +|+|||++++||+|+++||
T Consensus         2 ~~~~i~~S~kk~~~v~~~Irg~~v~~A~~~L~~~~~k~a~~i~k~L~~a~~nA~~~~g~d-~~~L~I~~~~v~~g~~~kr   80 (105)
T PF00237_consen    2 KLRNIRISPKKLREVARLIRGMSVDEAIAQLKFVPKKAAKFILKLLKSAIANAENNKGLD-PDNLYISEIWVNKGPYLKR   80 (105)
T ss_dssp             EEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHCTST-CGGEEEEEEEEEEEEEEEE
T ss_pred             ccccccCCHHHHHHHHHHHcCCCHHHHHHHHHhCcHHHHHHHHhhHHHHHhhcccccccc-cCceEEEEEEEEecccccC
Confidence            368999999999999999999999999999999999999999999999999999889999 7999999999999999999


Q ss_pred             ccccCCCCcccccccceeEEEEEee
Q psy7141         156 MRRHARVRMGRVEYKYCTYFVRLEE  180 (215)
Q Consensus       156 ir~rArGRa~~i~k~~~HI~VvL~E  180 (215)
                      ++||||||++++++++|||+|+|+|
T Consensus        81 ~~~rArGR~~~~~k~~~hi~vvl~E  105 (105)
T PF00237_consen   81 IRPRARGRAGPIRKRTSHITVVLKE  105 (105)
T ss_dssp             EEEECTTEEEEEEEEEEEEEEEEEE
T ss_pred             CCcCcCCCccCeecCceEEEEEEeC
Confidence            9999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L22 is known to bind 23S rRNA. It belongs to a family of ribosomal proteins which includes: bacterial L22; algal and plant chloroplast L22 (in legumes L22 is encoded in the nucleus instead of the chloroplast); cyanelle L22; archaebacterial L22; mammalian L17; plant L17 and yeast YL17.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3CD6_R 1Q7Y_S 1VQ6_R 1YI2_R 1QVF_Q 3CCR_R 3CCU_R 3CCL_R 1YJ9_R 3CCQ_R ....

>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e

Probab=100.00  E-value=3.7e-35  Score=227.04  Aligned_cols=104  Identities=33%  Similarity=0.378  Sum_probs=100.4

Q ss_pred             eccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCccc
Q psy7141          74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVI  153 (215)
Q Consensus        74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~l  153 (215)
                      +++.+++++||+|++++|++||||+++||+.||+|+++|+|+.|+++|+||.+||++++++| +++|||++++||+|+++
T Consensus         2 ~a~~~~i~~S~kK~~~v~~~Irg~~v~~A~~~L~~~~kk~a~~i~k~l~sa~~nA~~~~~~~-~~~L~I~~~~v~~g~~~   80 (105)
T cd00336           2 KAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFVPKKAAKIILKLLKSAEANAENNGLDD-PDKLYIKHIQVNKGPTL   80 (105)
T ss_pred             EEEEccCccCHHHHHHHHHHHcCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHhHHHcCCCC-ccceEEEEEEECCCCcc
Confidence            56689999999999999999999999999999999999999999999999999999877777 79999999999999999


Q ss_pred             ccccccCCCCcccccccceeEEEEE
Q psy7141         154 KGMRRHARVRMGRVEYKYCTYFVRL  178 (215)
Q Consensus       154 KRir~rArGRa~~i~k~~~HI~VvL  178 (215)
                      ||++||||||++++++++|||+|+|
T Consensus        81 kr~~~rarGR~~~~~k~~~hi~ivl  105 (105)
T cd00336          81 KRRRPRARGRANPIRKRTCHITVVL  105 (105)
T ss_pred             cCCCcCCCCCCcccccCceeEEEeC
Confidence            9999999999999999999999986

L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.

>TIGR01038 L22_arch ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal)

Probab=100.00  E-value=2.8e-33  Score=230.55  Aligned_cols=106  Identities=21%  Similarity=0.092  Sum_probs=102.0

Q ss_pred             eccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc--------------------------------CcccchHHHHHHH
Q psy7141          74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY--------------------------------VAKKGAPFIRDTI  121 (215)
Q Consensus        74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f--------------------------------~pKKaA~~I~kvL  121 (215)
                      .++.+++++||+|+++||++||||++++|+.+|+|                                +|+|+|+.|+++|
T Consensus        13 kA~~~~~riS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~~~~~~~~gR~P~Kaa~~i~klL   92 (150)
T TIGR01038        13 KARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRYNGKVGHRRGLKEWGWTAGRYPVKAAKFILKVL   92 (150)
T ss_pred             EEEeCCCcccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccccCCCchHHHHHHHHHH
Confidence            45599999999999999999999999999999999                                8999999999999


Q ss_pred             HHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeC
Q psy7141         122 LEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEG  181 (215)
Q Consensus       122 ~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~  181 (215)
                      +||.+||++ +|+| .|+|||.+++||+|+.+||++|||+||++++++++|||+|+|+|+
T Consensus        93 ~sA~aNA~~-~gld-~d~L~I~~i~vnkg~~~kR~~prA~GRa~~~~k~~~HI~Iil~e~  150 (150)
T TIGR01038        93 QNAEANAEY-KGLD-VEKLVIIHIQANKGPKIRRWMPRAFGRATPYNSSPTHIELVVEEK  150 (150)
T ss_pred             HHHHHHHHh-cCCC-hhHeEEEEEEECCCCccCCCCCccCCCCCcccCCCceEEEEEecC
Confidence            999999985 8999 699999999999999999999999999999999999999999874

This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22.

>PRK04223 rpl22p 50S ribosomal protein L22P; Reviewed

Probab=100.00  E-value=5.3e-33  Score=229.59  Aligned_cols=108  Identities=25%  Similarity=0.168  Sum_probs=103.2

Q ss_pred             eeccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc------------------------------CcccchHHHHHHHH
Q psy7141          73 VCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY------------------------------VAKKGAPFIRDTIL  122 (215)
Q Consensus        73 v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f------------------------------~pKKaA~~I~kvL~  122 (215)
                      +.+..+++++||+|+++||++||||+++||+.+|+|                              +|+|+|+.|+++|+
T Consensus        16 akA~~~~~rvS~kk~r~va~~IRG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~~~~~~gr~PkKaa~~i~KlL~   95 (153)
T PRK04223         16 AKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPFKRHNKKVGHRKGIDGWPAGRYPVKAAKAFLKLLE   95 (153)
T ss_pred             EEEEeCCCccChHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccCCCchHHHHHHHHHHH
Confidence            345599999999999999999999999999999999                              89999999999999


Q ss_pred             HHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCC
Q psy7141         123 EAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGK  182 (215)
Q Consensus       123 sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~  182 (215)
                      ||++||++ +|+| .|+|||.+++||+|+.+||++|||+||++++.+++|||+|+|+|.+
T Consensus        96 sA~aNA~~-~gld-~d~L~I~~i~v~kg~~~kR~~prA~GRa~~~~k~~sHI~Iil~e~~  153 (153)
T PRK04223         96 NAEANAEY-KGLD-TEKLVIVHIAAHKGRVIKGYMPRAFGRATPKNTETVNIEVILEEVE  153 (153)
T ss_pred             HHHHHHHh-cCCC-hhHeEEEEEEECCCCCCCCcCcccCCCCCcccCCCceEEEEEEeCC
Confidence            99999985 8999 6999999999999999999999999999999999999999999864

>PTZ00178 60S ribosomal protein L17; Provisional

Probab=100.00  E-value=4.9e-33  Score=234.86  Aligned_cols=115  Identities=14%  Similarity=0.059  Sum_probs=107.9

Q ss_pred             eccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc--------------------------------CcccchHHHHHHH
Q psy7141          74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY--------------------------------VAKKGAPFIRDTI  121 (215)
Q Consensus        74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f--------------------------------~pKKaA~~I~kvL  121 (215)
                      .++.+++++||+|+++||++||||++++|+.+|+|                                +|+|+|..|+++|
T Consensus        16 kA~~~~~riSpkk~r~Va~~IRGk~v~~A~~~L~~Vi~~k~~VPf~r~~~~vgh~~~~~~~~~~~GR~P~KaA~~i~KlL   95 (181)
T PTZ00178         16 KAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPFRRFNGGVGRTAQAKEFGHTQGRWPEKSVKFVLSLL   95 (181)
T ss_pred             EEEeCCcccchHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeecCCccccccccccccccCcCcHHHHHHHHHHH
Confidence            34499999999999999999999999999999997                                8999999999999


Q ss_pred             HHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCCCCCCcCC
Q psy7141         122 LEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWT  190 (215)
Q Consensus       122 ~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~y~~  190 (215)
                      +||.+||+ ++|+| +|+|||.+++||+|+++||++|||+||+++|++++|||+|+|+|.+...+.+..
T Consensus        96 ~SA~aNAe-~~gld-~d~L~I~~i~v~kG~~lKR~~pRA~GRA~~i~k~t~HI~Ivl~e~~~~~~~~~~  162 (181)
T PTZ00178         96 KNAEANAE-AKGLD-VEKLVISHVQVNRAPRGRRRTYRAHGRINPFMSSPCHIELIATEKDETVPKPKE  162 (181)
T ss_pred             HHHHHHHH-hcCCC-hhHeEEEEEEECCCcccCCCCCccCCCcCcccCCceeEEEEEEEcccccccchh
Confidence            99999999 69999 699999999999999999999999999999999999999999998777765543

>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional

Probab=99.98  E-value=1.2e-32  Score=248.50  Aligned_cols=112  Identities=16%  Similarity=0.148  Sum_probs=106.0

Q ss_pred             eeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhH-HhCCCCCCCCEEEEEEEecCCc
Q psy7141          73 VCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAV-KDHNVEFKSNLWVAESFVLKDI  151 (215)
Q Consensus        73 v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~-~~~gld~~~~L~I~e~~v~kG~  151 (215)
                      +.++.+++++||+|+++||++||||++++|+.+|+|+|+|+|..|+++|+||.+||+ +++|+| .|+|||.+++||+|+
T Consensus         3 akA~~r~iriSpkK~R~Va~~IRGk~v~~Al~~L~~~PkKaA~~I~KlLkSA~ANAe~~n~gld-~d~L~I~~~~VdkGp   81 (311)
T PRK12279          3 NKVIQRNIHISHRKASLVIDLVRNKPVHEAIRILSNTPKKFAPIVLKLLNSAISNVQHNSKDMD-PSKLYIYKIVANQGP   81 (311)
T ss_pred             eEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcCCC-hhHeEEEEEEECCCC
Confidence            455699999999999999999999999999999999999999999999999999999 579999 699999999999999


Q ss_pred             ccccccccCCCCcccccccceeEEEEEeeCCCCC
Q psy7141         152 VIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPK  185 (215)
Q Consensus       152 ~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~  185 (215)
                      .+||++||||||+++|++++|||+|+|.|..++.
T Consensus        82 ~lKR~~PRArGRA~~i~KrtsHItIvl~e~~~~~  115 (311)
T PRK12279         82 TMKRTLPRAKGSADQLFKRTTHLEIVLSDDVNER  115 (311)
T ss_pred             cccCCCCccCCCCCcccCCCccEEEEEecCCchh
Confidence            9999999999999999999999999999866543

>KOG3353|consensus

Probab=99.59  E-value=4.1e-17  Score=137.30  Aligned_cols=112  Identities=17%  Similarity=0.081  Sum_probs=104.6

Q ss_pred             ccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc--------------------------------CcccchHHHHHHHH
Q psy7141          75 HFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY--------------------------------VAKKGAPFIRDTIL  122 (215)
Q Consensus        75 ~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f--------------------------------~pKKaA~~I~kvL~  122 (215)
                      .++.++++|+|..++.+..|+++++..|+..|..                                +|+|+|+.++.+|+
T Consensus        11 arg~~lrv~fKn~r~~~~~i~~~~~~~a~~~l~~v~~~~~c~p~~~~~~g~g~~~q~k~~~~~~~rwpkksaefll~~Lk   90 (175)
T KOG3353|consen   11 ARGSNLRVHFKNTRETAQTIKCMELLKATVYLKDVILQKICVPFRRYNGGVGRTAQAKQWGWTQGRWPKKSAEFLLHMLK   90 (175)
T ss_pred             cccccEEEEeccCcccchhhcCcccccceeeeccchhhcccccceecCCCcCccchhhhhccccCcccchHHHHHHHHHH
Confidence            3489999999999999999999999999999862                                79999999999999


Q ss_pred             HHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCCCCCCc
Q psy7141         123 EAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYY  188 (215)
Q Consensus       123 sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~y  188 (215)
                      +|..||+. +|+|+ |.|+|.++.||+++.+.+.+|||+||.+++.+.+|||++||+|+++.+++-
T Consensus        91 N~esnaEl-kgldV-DsLvIehiqvnkApKm~~rtyraHg~in~y~ssP~hie~il~~ke~~v~k~  154 (175)
T KOG3353|consen   91 NAESNAEL-KGLDV-DSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKP  154 (175)
T ss_pred             hhhhcccc-cCcCc-ceeEeeehhhcccchhhhHHHHhhcccccccCChHHHHHHHHhhcccCCCh
Confidence            99999995 89995 999999999999999999999999999999999999999999998877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	215
2ftc_M	110	Structural Model For The Large Subunit Of The Mamma		8e-32
1giy_S	113	Crystal Structure Of The Ribosome At 5.5 A Resoluti		7e-04
3mrz_S	112	Recognition Of The Amber Stop Codon By Release Fact		8e-04

>pdb|2FTC|M Chain M, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 110

Iteration: 1
 Score =  133 bits (334), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 82/110 (74%)
Query: 75  HFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNV 134
           H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+DHNV
Sbjct: 1   HCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNV 60
Query: 135 EFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPP 184
           EF+SNL++AES   +   +K +R H R R G +E  YC YFV+L EG PP
Sbjct: 61  EFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPP 110

>pdb|1GIY|S Chain S, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Subunit, Three Trna, And Mrna Molecules Are In The File 1gix Length = 113

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
           ++ SP K+  +  LIRG S+++A   L Y  K+GA F+   +  A   AV +H++  +  
Sbjct: 10  VRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDM-LEDR 68
Query: 140 LWVAESFV 147
           L+V  ++V
Sbjct: 69  LYVKAAYV 76

>pdb|3MRZ|S Chain S, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 112

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
           ++ SP K+  +  LIRG S+++A   L Y  K+GA F+   +  A   AV +H++  +  
Sbjct: 10  VRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDM-LEDR 68
Query: 140 LWVAESFV 147
           L+V  ++V
Sbjct: 69  LYVKAAYV 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
2ftc_M	110	Mitochondrial ribosomal protein L22 isoform A; mit	2e-38
3r8s_S	110	50S ribosomal protein L22; protein biosynthesis, R	1e-09
1i4j_A	110	50S ribosomal protein L22; mutant, erythromycin re	5e-09
3bbo_U	199	Ribosomal protein L22; large ribosomal subunit, sp	4e-08
2zjr_P	134	50S ribosomal protein L22; ribosome, large ribosom	1e-07
3iz5_V	171	60S ribosomal protein L17 (L22P); eukaryotic ribos	3e-04

>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Length = 110

 Score =  128 bits (323), Expect = 2e-38
 Identities = 64/110 (58%), Positives = 82/110 (74%)

Query: 75  HFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNV 134
           H + +IKYS DKMWY+A LIRGMS+DQAL QL +  KKGA  I++ +LEAQ+MAV+DHNV
Sbjct: 1   HCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNV 60

Query: 135 EFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPP 184
           EF+SNL++AES   +   +K +R H R R G +E  YC YFV+L EG PP
Sbjct: 61  EFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPP 110

>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Length = 110

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
            + S  K+  +A LIRG  V QAL  L Y  KK A  ++  +  A   A  +   +   +
Sbjct: 10  ARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGAD-IDD 68

Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRV 167
           L V + FV +   +K +   A+ R  R+
Sbjct: 69  LKVTKIFVDEGPSMKRIMPRAKGRADRI 96

>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Length = 110

 Score = 51.3 bits (124), Expect = 5e-09
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEF-KS 138
           ++ SP K+  +  LIRG S+++A   L Y  K+GA F+   +  A   A   +N +  + 
Sbjct: 10  VRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESA--AANAVNNHDALED 67

Query: 139 NLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYC--TYFVRLEEGK 182
            L+V  ++V +      +   AR R   ++ +    T  +  + GK
Sbjct: 68  RLYVKAAYVDEGPA---VLPRARGRADIIKKRTSHITVILGEKHGK 110

>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 199

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEF-KS 138
           I  S DK   +   IRG S  + L+ L  +  +    I   I  A   A   HN +F K+
Sbjct: 39  ISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSA--AANASHNKQFNKA 96

Query: 139 NLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEK 198
           NL ++++ V K I +K ++  AR R   +    C   + L +     +Y        P+K
Sbjct: 97  NLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDITHFDSYDKFLESLTPKK 156

>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Length = 134

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEF-KS 138
           ++ SP K+  +  +IRG SV  A   L ++ +  +  +   +  A   A   HN E  + 
Sbjct: 31  VRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSA--KANALHNDEMLED 88

Query: 139 NLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEE 180
            L+V E++V     +K +   AR     ++ +     + + E
Sbjct: 89  RLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAE 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
2ftc_M	110	Mitochondrial ribosomal protein L22 isoform A; mit	100.0
3r8s_S	110	50S ribosomal protein L22; protein biosynthesis, R	100.0
2zjr_P	134	50S ribosomal protein L22; ribosome, large ribosom	100.0
1i4j_A	110	50S ribosomal protein L22; mutant, erythromycin re	100.0
3bbo_U	199	Ribosomal protein L22; large ribosomal subunit, sp	100.0
1vq8_R	155	50S ribosomal protein L22P; ribosome 50S, protein-	100.0
3j21_S	155	50S ribosomal protein L22P; archaea, archaeal, KIN	100.0
2zkr_r	184	60S ribosomal protein L17; protein-RNA complex, 60	100.0
3iz5_V	171	60S ribosomal protein L17 (L22P); eukaryotic ribos	100.0
3u5e_P	184	L20A, YL17, 60S ribosomal protein L17-A; translati	100.0
4a17_Q	183	RPL17, 60S ribosomal protein L21; eukaryotic ribos	100.0

>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M

Probab=100.00  E-value=1.1e-41  Score=266.14  Aligned_cols=110  Identities=58%  Similarity=0.958  Sum_probs=106.8

Q ss_pred             ccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCcccc
Q psy7141          75 HFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIK  154 (215)
Q Consensus        75 ~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lK  154 (215)
                      ||.+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||++||++++|+|++|+|||++++||+|+++|
T Consensus         1 ~~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~f~pkkaa~~v~klL~sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~K   80 (110)
T 2ftc_M            1 HCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLK   80 (110)
T ss_pred             CCcccceeCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCCCccCeEEEEEEECCCCccc
Confidence            68999999999999999999999999999999999999999999999999999998899994499999999999999999


Q ss_pred             cccccCCCCcccccccceeEEEEEeeCCCC
Q psy7141         155 GMRRHARVRMGRVEYKYCTYFVRLEEGKPP  184 (215)
Q Consensus       155 Rir~rArGRa~~i~k~~~HI~VvL~E~~~p  184 (215)
                      |++||||||+++|++++|||+|+|+|+++|
T Consensus        81 R~~prA~GRa~~i~k~~~HI~vvl~e~~~p  110 (110)
T 2ftc_M           81 RIRYHGRGRFGIMEKVYCHYFVKLVEGPPP  110 (110)
T ss_pred             CCCCCCCCCCCccccCCccEEEEEEeCCCC
Confidence            999999999999999999999999999886

>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...

Probab=100.00  E-value=3.2e-40  Score=257.89  Aligned_cols=109  Identities=25%  Similarity=0.258  Sum_probs=104.9

Q ss_pred             eeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCc
Q psy7141          72 FVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDI  151 (215)
Q Consensus        72 ~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~  151 (215)
                      |+.+..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||++||++++|+| +|+|||++++||+|+
T Consensus         2 e~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~f~pkkaa~~v~k~L~sA~aNAe~~~gld-~d~L~I~~~~v~~g~   80 (110)
T 3r8s_S            2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGAD-IDDLKVTKIFVDEGP   80 (110)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHSSCC-TTSCEEEEEEEEEEE
T ss_pred             eEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHhhCCHHHHHHHHHHHHHHHHhHHHhcCCC-hhheEEEEEEeCCCC
Confidence            4455699999999999999999999999999999999999999999999999999999988999 699999999999999


Q ss_pred             ccccccccCCCCcccccccceeEEEEEeeC
Q psy7141         152 VIKGMRRHARVRMGRVEYKYCTYFVRLEEG  181 (215)
Q Consensus       152 ~lKRir~rArGRa~~i~k~~~HI~VvL~E~  181 (215)
                      ++||++||||||+++|++++|||+|+|+|+
T Consensus        81 ~~KR~~pRA~GR~~~i~k~~~HI~vvl~ek  110 (110)
T 3r8s_S           81 SMKRIMPRAKGRADRILKRTSHITVVVSDR  110 (110)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEEEEEEEECC
T ss_pred             ccCCCCcCCCCCCCCcccCCccEEEEEecC
Confidence            999999999999999999999999999985

>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...

Probab=100.00  E-value=2.5e-39  Score=260.92  Aligned_cols=110  Identities=18%  Similarity=0.246  Sum_probs=105.7

Q ss_pred             eeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCcc
Q psy7141          73 VCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIV  152 (215)
Q Consensus        73 v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~  152 (215)
                      +++..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||++||++++|+| +|+|||++++||+|++
T Consensus        24 akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~f~pkKaA~~v~klL~sA~aNAe~n~gld-~d~L~I~~i~V~~Gp~  102 (134)
T 2zjr_P           24 GFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEML-EDRLFVKEAYVDAGPT  102 (134)
T ss_dssp             TEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCC-GGGEEEEEEEEEECCC
T ss_pred             EEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHCcHhHHHHHHHHHHHHHHhHHHhcCCC-hhheEEEEEEECCCcc
Confidence            455599999999999999999999999999999999999999999999999999999889999 6999999999999999


Q ss_pred             cccccccCCCCcccccccceeEEEEEeeCCC
Q psy7141         153 IKGMRRHARVRMGRVEYKYCTYFVRLEEGKP  183 (215)
Q Consensus       153 lKRir~rArGRa~~i~k~~~HI~VvL~E~~~  183 (215)
                      +||++||||||+++|++++|||+|+|+|++.
T Consensus       103 lKR~~pRA~GRa~~i~k~tsHItvvl~E~~~  133 (134)
T 2zjr_P          103 LKRLIPRARGSANIIKKRTSHITIIVAEKGN  133 (134)
T ss_dssp             EEEEEECSTTCEEEEEECCEEEEEEEEECCC
T ss_pred             ccCCCCCCCCCCcccccCCceEEEEEEecCC
Confidence            9999999999999999999999999999753

>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...

Probab=100.00  E-value=1.9e-38  Score=247.89  Aligned_cols=108  Identities=26%  Similarity=0.327  Sum_probs=103.1

Q ss_pred             eeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCc
Q psy7141          72 FVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDI  151 (215)
Q Consensus        72 ~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~  151 (215)
                      ++.+..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||++||++++|+| +|+|||++++||+|+
T Consensus         2 ~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~~~pkkaa~~v~klL~sA~aNAe~n~gld-~d~L~I~~~~v~~g~   80 (110)
T 1i4j_A            2 EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDAL-EDRLYVKAAYVDEGP   80 (110)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCC-GGGEEEEEEEEEEEE
T ss_pred             eEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCC-hhheEEEEEEECCCC
Confidence            3456699999999999999999999999999999999999999999999999999999988999 699999999999999


Q ss_pred             ccccccccCCCCcccccccceeEEEEEeeCCC
Q psy7141         152 VIKGMRRHARVRMGRVEYKYCTYFVRLEEGKP  183 (215)
Q Consensus       152 ~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~  183 (215)
                      +   ++||||||+++|++++|||+|+|+|++.
T Consensus        81 ~---~~pRA~GRa~~i~k~~~HItvvl~e~~~  109 (110)
T 1i4j_A           81 A---VLPRARGRADIIKKRTSHITVILGEKHG  109 (110)
T ss_dssp             E---ECSCSSSCCCSCCEEEEEEEEEEEESSC
T ss_pred             e---EeecCCCCCcccccCCeeEEEEEEecCC
Confidence            9   9999999999999999999999999753

>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=3.2e-39  Score=274.39  Aligned_cols=134  Identities=23%  Similarity=0.185  Sum_probs=114.6

Q ss_pred             eeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCc
Q psy7141          72 FVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDI  151 (215)
Q Consensus        72 ~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~  151 (215)
                      +++++.+++++||+|+++||++||||+|+||+.||+|+|+|+|..|+++|+||++||++++|+| +|+|||++|+||+|+
T Consensus        31 eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~f~PkKaA~~V~KlLkSA~ANAe~n~GLD-~d~L~I~~i~VnkGp  109 (199)
T 3bbo_U           31 EITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASHNKQFN-KANLIISKAEVNKGI  109 (199)
T ss_dssp             CBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGGGCCCTTHHHHHHHHHHHTTHHHHTSSCC-SSSCEEEECCCCBCC
T ss_pred             EEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHHHCCHhHHHHHHHHHHHHHHhHHhccCCC-hhheEEEEEEECCCC
Confidence            4566699999999999999999999999999999999999999999999999999999889999 699999999999999


Q ss_pred             ccccccccCCCCcccccccceeEEEEEeeCCCCCCCcCCCCCCchHHHHHHHHHh
Q psy7141         152 VIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSL  206 (215)
Q Consensus       152 ~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~y~~~~~~~~~~~~~~~~~~  206 (215)
                      ++||++||||||+++|++++|||+|+|+|++++.+|.....+.....+.+|+--|
T Consensus       110 ~lKR~~pRArGRa~~I~KrtsHItVVL~E~~~~~~yke~~~kl~~k~li~~~~~~  164 (199)
T 3bbo_U          110 TLKKVKPRARGRSYMILRPTCHITIVLRDITHFDSYDKFLESLTPKKLIALLGLM  164 (199)
T ss_dssp             CCCCCCCSSSSCSCCCCCCCBCCCCEEECCCCCCCCCCCCCC-------------
T ss_pred             cccCCCCCCCCCCCcccCCCccEEEEEeeCCchHHHHHHHHhhchhHHHHHHhhh
Confidence            9999999999999999999999999999999987765556677778888887544

>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...

Probab=100.00  E-value=2.4e-36  Score=248.72  Aligned_cols=108  Identities=17%  Similarity=0.028  Sum_probs=102.7

Q ss_pred             eccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc------------------------------CcccchHHHHHHHHH
Q psy7141          74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY------------------------------VAKKGAPFIRDTILE  123 (215)
Q Consensus        74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f------------------------------~pKKaA~~I~kvL~s  123 (215)
                      .++.+++++||+|+++||++||||++++|+.+|+|                              +|+|+|+.|+++|+|
T Consensus        16 kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~~gr~PkKaa~~ilklL~s   95 (155)
T 1vq8_R           16 KAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLEN   95 (155)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHHHHHHHHHHHHH
T ss_pred             EEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccccccccCCCcHHHHHHHHHHHHH
Confidence            44599999999999999999999999999999999                              999999999999999


Q ss_pred             HHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCC
Q psy7141         124 AQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKP  183 (215)
Q Consensus       124 A~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~  183 (215)
                      |++||+++ ||| +|+|||+|++||+|+++||++|||+||+++|++++|||+|+|+|.+.
T Consensus        96 A~aNAe~k-gld-~d~L~I~~i~v~kg~~~kR~~pRA~GRa~~~~k~~~HI~vil~E~~~  153 (155)
T 1vq8_R           96 AVGNADHQ-GFD-GEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEV  153 (155)
T ss_dssp             HHHHHHHT-TSC-GGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC--
T ss_pred             HHHHHHHc-CCC-hhheEEEEEEECCCccccCCCCCCCCCCCceeCCCccEEEEEEecCC
Confidence            99999975 999 69999999999999999999999999999999999999999999765

>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.3e-35  Score=244.34  Aligned_cols=107  Identities=21%  Similarity=0.191  Sum_probs=103.3

Q ss_pred             eccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc-----------------------------CcccchHHHHHHHHHH
Q psy7141          74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY-----------------------------VAKKGAPFIRDTILEA  124 (215)
Q Consensus        74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f-----------------------------~pKKaA~~I~kvL~sA  124 (215)
                      .+..+++++||+|+++||++||||++++|+.+|+|                             +|+|+|+.|+++|+||
T Consensus        19 kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~gr~PkKaa~~ilklL~sA   98 (155)
T 3j21_S           19 RASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNV   98 (155)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCSSSCSBEECCHHHHHHHHHHHHHH
T ss_pred             EEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccccCCCcCcCcHHHHHHHHHHHHHH
Confidence            45599999999999999999999999999999999                             9999999999999999


Q ss_pred             HHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCC
Q psy7141         125 QEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGK  182 (215)
Q Consensus       125 ~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~  182 (215)
                      ++||++ +||| +|+|||+||+||+|+++||++|||+||++++++++|||+|+|+|.+
T Consensus        99 ~aNAe~-kgld-~d~L~I~~i~vnkgp~~kR~~pRA~GR~~~~~k~~~HI~vil~E~~  154 (155)
T 3j21_S           99 KNNAVQ-KGLD-PDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVVEEIR  154 (155)
T ss_dssp             HHHHHH-HTCC-GGGCEEEEEEEEEEEEECCEEECSTTCEEECCEEEEEEEEEEECCC
T ss_pred             HHHHHH-cCCC-hhheEEEEEEecCCCcccCCCCCCCCCCCceecCCccEEEEEEecc
Confidence            999996 8999 6999999999999999999999999999999999999999999975

>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=6.7e-35  Score=245.89  Aligned_cols=112  Identities=18%  Similarity=0.126  Sum_probs=101.0

Q ss_pred             eccccccccCHHHHHHHHHHHcCCCHHHHHHHHc----------c----------------------CcccchHHHHHHH
Q psy7141          74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLG----------Y----------------------VAKKGAPFIRDTI  121 (215)
Q Consensus        74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~----------f----------------------~pKKaA~~I~kvL  121 (215)
                      .++.+++++||+|+++||++||||++++|+.+|+          |                      +|+|+|+.|+++|
T Consensus        16 kA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~~~~~~GR~PkKaa~~ilklL   95 (184)
T 2zkr_r           16 KSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHML   95 (184)
T ss_dssp             EEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHHHHHHHHH
T ss_pred             EEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccccccccCCCcHHHHHHHHHHH
Confidence            4559999999999999999999999999999999          9                      9999999999999


Q ss_pred             HHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCCCCCC
Q psy7141         122 LEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNY  187 (215)
Q Consensus       122 ~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~  187 (215)
                      +||.+||++ +||| +|+|||.||+||+|+++||++|||+||+++|++++|||+|+|+|.+..+++
T Consensus        96 ksA~aNAe~-kglD-~d~L~I~~i~Vnkg~~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~~v~k  159 (184)
T 2zkr_r           96 KNAESNAEL-KGLD-VDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK  159 (184)
T ss_dssp             HHHHHHHHH-HTSC-TTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEECC------
T ss_pred             HHHHHHHHH-cCCC-hhheEEEEEEECCCccCcCCCCCCCCCCCCccCCCceEEEEEEEcCccCCC
Confidence            999999996 5999 699999999999999999999999999999999999999999998876653

>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N

Probab=100.00  E-value=7.6e-35  Score=245.51  Aligned_cols=113  Identities=15%  Similarity=0.082  Sum_probs=107.4

Q ss_pred             eccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc--------------------------------CcccchHHHHHHH
Q psy7141          74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY--------------------------------VAKKGAPFIRDTI  121 (215)
Q Consensus        74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f--------------------------------~pKKaA~~I~kvL  121 (215)
                      .++.+++++||+|+++||++||||++++|+.+|+|                                +|+|+|+.|+++|
T Consensus        16 kA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~~g~~~GR~PkKaa~~ilklL   95 (184)
T 3u5e_P           16 SARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQGLL   95 (184)
T ss_dssp             EEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGGGTCSCEECCHHHHHHHHHHH
T ss_pred             EEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhccCCccCCCchHHHHHHHHHH
Confidence            44599999999999999999999999999999994                                7999999999999


Q ss_pred             HHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCCCCCCc
Q psy7141         122 LEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYY  188 (215)
Q Consensus       122 ~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~y  188 (215)
                      +||++||++ +||| .|+|||+||+||+|+++||++|||+||+++|++++|||+|+|+|++..+++-
T Consensus        96 ksA~aNAe~-kgLD-~d~L~I~~i~Vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~e~~v~k~  160 (184)
T 3u5e_P           96 QNAAANAEA-KGLD-ATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAKA  160 (184)
T ss_dssp             HHHHHHHHH-TTCC-TTTEEEEEEEEEECCCEEEEEEEGGGEEEEEEECCEEEEEEEEECCCCCCCC
T ss_pred             HHHHHHHHH-cCCC-hhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeccccCCCc
Confidence            999999996 8999 6999999999999999999999999999999999999999999999888653

>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q

Probab=100.00  E-value=2e-34  Score=242.60  Aligned_cols=112  Identities=13%  Similarity=0.054  Sum_probs=104.5

Q ss_pred             eccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc--------------------------------CcccchHHHHHHH
Q psy7141          74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY--------------------------------VAKKGAPFIRDTI  121 (215)
Q Consensus        74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f--------------------------------~pKKaA~~I~kvL  121 (215)
                      .++.+++++||+|+++||++||||++++|+.+|+|                                +|+|+|+.|+++|
T Consensus        18 kA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~~g~~~Gr~PkKaa~~ilklL   97 (183)
T 4a17_Q           18 KTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHEFGRTQGRWPVKSVKVILGLL   97 (183)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGGTTCSBEECCHHHHHHHHHHH
T ss_pred             EEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhhcCCccCcCcHHHHHHHHHHH
Confidence            44499999999999999999999999999999994                                8999999999999


Q ss_pred             HHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCCCCCC
Q psy7141         122 LEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNY  187 (215)
Q Consensus       122 ~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~  187 (215)
                      +||.+||++ +||| .|+|||.||+||+|+++||++|||+||+++|++++|||+|+|+|.+..+++
T Consensus        98 ksA~aNAe~-kgLD-~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~Eke~~v~k  161 (183)
T 4a17_Q           98 DNLSANAQA-KSLN-TANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRK  161 (183)
T ss_dssp             HHHHHHTTT-TTCC-STTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEEECCCC---
T ss_pred             HHHHHHHHh-cCCC-hhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEeeccccCcC
Confidence            999999985 6999 699999999999999999999999999999999999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	215
d2gycq1	106	d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escheric	1e-22
d2zjrp1	127	d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococ	4e-19
d1i4ja_	110	d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquat	3e-18
d1vqor1	150	d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon	7e-13

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

 Score = 86.0 bits (213), Expect = 1e-22
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
            + S  K+  +A LIRG  V QAL  L Y  KK A  ++  +  A   A  +   +   +
Sbjct: 6   ARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGAD-IDD 64

Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEE 180
           L V + FV +   +K +   A+ R  R+  +     V + +
Sbjct: 65  LKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 105

>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 77.5 bits (191), Expect = 4e-19
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 62  QQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTI 121
           +Q+ + R+P F     + ++ SP K+  +  +IRG SV  A   L ++ +  +  +   +
Sbjct: 8   KQQVKLRKPGFAVA--KYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVL 65

Query: 122 LEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEG 181
             A+  A+ +  +  +  L+V E++V     +K +   AR     ++ +     + + E 
Sbjct: 66  NSAKANALHNDEML-EDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEK 124

Query: 182 K 182
            
Sbjct: 125 G 125

>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]

 Score = 74.9 bits (184), Expect = 3e-18
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
           ++ SP K+  +  LIRG S+++A   L Y  K+GA F+   +  A   AV +H+   +  
Sbjct: 10  VRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDA-LEDR 68

Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEE 180
           L+V  ++V +   +      AR R   ++ +     V L E
Sbjct: 69  LYVKAAYVDEGPAVL---PRARGRADIIKKRTSHITVILGE 106

>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 61.5 bits (149), Expect = 7e-13
 Identities = 20/131 (15%), Positives = 33/131 (25%), Gaps = 32/131 (24%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKK--------------------------- 112
            + S      IA  I+G +  +A+  L  V +                            
Sbjct: 21  RQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRY 80

Query: 113 ---GAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEY 169
               +    D +  A   A  DH       + +      K    +G +  A  R      
Sbjct: 81  PEKASKAFLDLLENAVGNA--DHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNS 138

Query: 170 KYCTYFVRLEE 180
                 + LEE
Sbjct: 139 PQVDVELILEE 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d2zjrp1	127	Ribosomal protein L22 {Deinococcus radiodurans [Ta	100.0
d1i4ja_	110	Ribosomal protein L22 {Thermus aquaticus, subsp. T	100.0
d2gycq1	106	Ribosomal protein L22 {Escherichia coli [TaxId: 56	100.0
d1vqor1	150	Ribosomal protein L22 {Archaeon Haloarcula marismo	99.98

>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=3.6e-38  Score=250.18  Aligned_cols=106  Identities=19%  Similarity=0.271  Sum_probs=103.5

Q ss_pred             ccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccc
Q psy7141          77 KEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGM  156 (215)
Q Consensus        77 ~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRi  156 (215)
                      .+++++||+|++.||++||||+|+||+.||+|+|+|+|..|.++|+||++||++++|+| +|+|||++++||+|+++||+
T Consensus        21 ~k~ir~Sp~K~r~v~~~IrG~~v~eAl~~L~f~~kkaa~~v~k~l~sA~aNA~~~~~~d-~~~L~I~~~~v~~G~~~KR~   99 (127)
T d2zjrp1          21 AKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEML-EDRLFVKEAYVDAGPTLKRL   99 (127)
T ss_dssp             EEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCC-GGGEEEEEEEEEECCCEEEE
T ss_pred             hcccccCHHHHHHHHHHHcCCcHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHhcccCc-ccceEEEEEEECCCCcccCC
Confidence            78999999999999999999999999999999999999999999999999999889999 79999999999999999999


Q ss_pred             cccCCCCcccccccceeEEEEEeeCCC
Q psy7141         157 RRHARVRMGRVEYKYCTYFVRLEEGKP  183 (215)
Q Consensus       157 r~rArGRa~~i~k~~~HI~VvL~E~~~  183 (215)
                      +||||||++++++++|||+|+|.|+..
T Consensus       100 ~prArGRa~~i~k~~sHi~VvL~e~~~  126 (127)
T d2zjrp1         100 IPRARGSANIIKKRTSHITIIVAEKGN  126 (127)
T ss_dssp             EECSTTCEEEEEECCEEEEEEEEECCC
T ss_pred             CCCcCCCCCcccCCcccEEEEEEecCC
Confidence            999999999999999999999999764

>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]

Probab=100.00  E-value=5e-37  Score=238.18  Aligned_cols=108  Identities=26%  Similarity=0.332  Sum_probs=102.6

Q ss_pred             eeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCc
Q psy7141          72 FVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDI  151 (215)
Q Consensus        72 ~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~  151 (215)
                      |+.+..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|.++|+||++||++++|+| +|+|||++++||+|+
T Consensus         2 e~~A~~k~ir~Sp~K~r~va~~IrG~~v~~Al~~L~f~~~kaa~~i~k~l~SA~aNA~~~~~~d-~~~L~I~~~~v~~G~   80 (110)
T d1i4ja_           2 EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDAL-EDRLYVKAAYVDEGP   80 (110)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCC-GGGEEEEEEEEEEEE
T ss_pred             cEEEEcCccccCHHHHHHHHHHHcCCcHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhccCCC-ccceEEEEEEECCCc
Confidence            4556699999999999999999999999999999999999999999999999999999989999 699999999999999


Q ss_pred             ccccccccCCCCcccccccceeEEEEEeeCCC
Q psy7141         152 VIKGMRRHARVRMGRVEYKYCTYFVRLEEGKP  183 (215)
Q Consensus       152 ~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~  183 (215)
                      ++|   ||||||+++|++++|||+|+|.|++.
T Consensus        81 ~~k---~rarGRa~~i~k~~sHi~vvL~e~~~  109 (110)
T d1i4ja_          81 AVL---PRARGRADIIKKRTSHITVILGEKHG  109 (110)
T ss_dssp             EEC---SCSSSCCCSCCEEEEEEEEEEEESSC
T ss_pred             eEC---hhhccCCCcccCCcccEEEEEeecCC
Confidence            876   79999999999999999999999864

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-39  Score=249.21  Aligned_cols=105  Identities=26%  Similarity=0.286  Sum_probs=102.3

Q ss_pred             cccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCccccc
Q psy7141          76 FKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKG  155 (215)
Q Consensus        76 ~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKR  155 (215)
                      ..+++++||+|++.||++||||+|+||+.||+|+|+|+|+.|.++|+||++||++++|+| +|+|||+++|||+|+++||
T Consensus         2 ~~k~ir~Sp~K~r~va~~IrG~~v~~A~~~L~f~~kkaa~~i~k~l~sA~aNA~~~~~~d-~~~L~I~~~~v~~G~~~KR   80 (106)
T d2gycq1           2 KHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGAD-IDDLKVTKIFVDEGPSMKR   80 (106)
T ss_dssp             CCCCCCCCSSSSCSSSSSSSSSCSHHHHSSSSSCCSSTTSSTTTSSSSSSTTTSTTTTCC-TTTEEECCCCCCCCCBCCC
T ss_pred             CcCccccCHHHHHHHHHHHcCCcHHHHHHHHccCCcccchHHHHHHHHHHHHHHHhcCCC-HHHhEEEEEEECCCCcccC
Confidence            368999999999999999999999999999999999999999999999999999889999 7999999999999999999


Q ss_pred             ccccCCCCcccccccceeEEEEEeeC
Q psy7141         156 MRRHARVRMGRVEYKYCTYFVRLEEG  181 (215)
Q Consensus       156 ir~rArGRa~~i~k~~~HI~VvL~E~  181 (215)
                      ++||||||++++++++|||+|+|+|+
T Consensus        81 ~~~rarGRa~~i~k~~sHi~vvL~Ek  106 (106)
T d2gycq1          81 IMPRAKGRADRILKRTSHITVVVSDR  106 (106)
T ss_dssp             BCCCTTTCCCBCCCBCCCCCCCEEEC
T ss_pred             cCCcccCCCCcccCCCccEEEEEecC
Confidence            99999999999999999999999985

>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.98  E-value=1.2e-33  Score=229.28  Aligned_cols=105  Identities=17%  Similarity=0.038  Sum_probs=100.2

Q ss_pred             eccccccccCHHHHHHHHHHHcCCCHHHHHHHHc------------------------------cCcccchHHHHHHHHH
Q psy7141          74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLG------------------------------YVAKKGAPFIRDTILE  123 (215)
Q Consensus        74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~------------------------------f~pKKaA~~I~kvL~s  123 (215)
                      .++.+++++||+|+++||++||||+++||+.||+                              |+|+|+|+.|+++|+|
T Consensus        15 kA~~~~~riS~kK~~~va~~IrGk~v~~A~~~L~~v~~kk~avp~~~~~~~v~~~~~~~~~~~g~~p~kaa~~i~kll~s   94 (150)
T d1vqor1          15 KAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLEN   94 (150)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSCSBEECCHHHHHHHHHHHHH
T ss_pred             EEEeCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhcCCCcccChHHHHHHHHHHHHH
Confidence            3449999999999999999999999999999997                              6899999999999999


Q ss_pred             HHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEee
Q psy7141         124 AQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEE  180 (215)
Q Consensus       124 A~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E  180 (215)
                      |.+||++ .|+| +|+|||.++|||+|+++||++||||||++++++++|||+|+|+|
T Consensus        95 a~aNA~~-~~~d-~~~L~I~~~~v~kG~~~KR~~prArGRa~~i~k~~~hi~vvL~E  149 (150)
T d1vqor1          95 AVGNADH-QGFD-GEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEE  149 (150)
T ss_dssp             HHHHHHH-TTSC-GGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEEC
T ss_pred             HHHHHHh-cCCC-hhHeEEEEEEECCCccccCcCcccCCCCCCccCCCceEEEEEeC
Confidence            9999985 7899 79999999999999999999999999999999999999999987