Psyllid ID: psy7153

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKIYPK
ccccccccccEEEEcccccccHHHcccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
cHHHHHcccccEEEEccccccEEEEccccccccEEEEEEccccccccHHccccEEEccHHHHHHHHHHHHHHHHHcccHHHHccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
meelkldpnqtllcqgtlrpdliESASHLASNKADvikthhndsPLIRALREqgkvieplkdFHKDEVRKlgldlgltpevvmrhpfpgpglAIRVICGeeryiekdysETQVLVKIIVEYDQMFKKIYPK
meelkldpnqtllCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKvieplkdfhkdeVRKLGLdlgltpevvmrhpfpgpGLAIRVICGEERYiekdysetqVLVKIIVEYDQMFKKIYPK
MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKIYPK
************LCQGTL***************************LIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKIY**
*****LDPNQTLLCQGTLRPDLIESASHL****ADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKIYPK
MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKIYPK
MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKIYPK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKIYPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query131 2.2.26 [Sep-21-2011]
P49915 693 GMP synthase [glutamine-h yes N/A 0.954 0.180 0.672 4e-43
Q5RA96 693 GMP synthase [glutamine-h yes N/A 0.954 0.180 0.672 4e-43
Q3THK7 693 GMP synthase [glutamine-h yes N/A 0.954 0.180 0.664 3e-42
Q4V7C6 693 GMP synthase [glutamine-h yes N/A 0.954 0.180 0.664 4e-42
Q09580 745 Probable GMP synthase [gl yes N/A 0.778 0.136 0.656 5e-35
P32073 718 GMP synthase [glutamine-h yes N/A 0.900 0.164 0.579 1e-34
Q8F4F4 603 Probable GMP synthase [gl yes N/A 0.816 0.177 0.5 7e-23
Q72RB7 603 Probable GMP synthase [gl yes N/A 0.816 0.177 0.5 7e-23
Q0VNF0523 GMP synthase [glutamine-h yes N/A 0.732 0.183 0.495 5e-20
Q311X7516 GMP synthase [glutamine-h yes N/A 0.702 0.178 0.552 8e-20
>sp|P49915|GUAA_HUMAN GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1 Back     alignment and function desciption
 Score =  172 bits (437), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 99/125 (79%)

Query: 3   ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
           E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct: 354 EMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 413

Query: 63  FHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYD 122
           FHKDEVR LG +LGL  E+V RHPFPGPGLAIRVIC EE YI KD+ ET  ++KI+ ++ 
Sbjct: 414 FHKDEVRILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFS 473

Query: 123 QMFKK 127
              KK
Sbjct: 474 ASVKK 478
Involved in the de novo synthesis of guanine nucleotides which are not only essential for DNA and RNA synthesis, but also provide GTP, which is involved in a number of cellular processes important for cell division.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 2
>sp|Q5RA96|GUAA_PONAB GMP synthase [glutamine-hydrolyzing] OS=Pongo abelii GN=GMPS PE=2 SV=1 Back     alignment and function description
>sp|Q3THK7|GUAA_MOUSE GMP synthase [glutamine-hydrolyzing] OS=Mus musculus GN=Gmps PE=1 SV=2 Back     alignment and function description
>sp|Q4V7C6|GUAA_RAT GMP synthase [glutamine-hydrolyzing] OS=Rattus norvegicus GN=Gmps PE=1 SV=1 Back     alignment and function description
>sp|Q09580|GUAA_CAEEL Probable GMP synthase [glutamine-hydrolyzing] OS=Caenorhabditis elegans GN=M106.4 PE=2 SV=3 Back     alignment and function description
>sp|P32073|GUAA_DICDI GMP synthase [glutamine-hydrolyzing] OS=Dictyostelium discoideum GN=guaA PE=1 SV=2 Back     alignment and function description
>sp|Q8F4F4|GUAA_LEPIN Probable GMP synthase [glutamine-hydrolyzing] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=guaA PE=3 SV=2 Back     alignment and function description
>sp|Q72RB7|GUAA_LEPIC Probable GMP synthase [glutamine-hydrolyzing] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=guaA PE=3 SV=1 Back     alignment and function description
>sp|Q0VNF0|GUAA_ALCBS GMP synthase [glutamine-hydrolyzing] OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=guaA PE=3 SV=1 Back     alignment and function description
>sp|Q311X7|GUAA_DESDG GMP synthase [glutamine-hydrolyzing] OS=Desulfovibrio desulfuricans (strain G20) GN=guaA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query131
270012865 687 hypothetical protein TcasGA2_TC030725 [T 0.969 0.184 0.740 3e-50
189240082 748 PREDICTED: similar to gmp synthase [Trib 0.969 0.169 0.740 3e-50
242013853 685 GMP synthase, putative [Pediculus humanu 0.969 0.185 0.732 1e-47
359843286 486 glutamine amidotransferase, partial [Sch 0.961 0.259 0.714 1e-47
66522082 718 PREDICTED: GMP synthase [glutamine-hydro 0.969 0.176 0.692 4e-47
380022491 718 PREDICTED: GMP synthase [glutamine-hydro 0.969 0.176 0.692 4e-47
380022489 716 PREDICTED: GMP synthase [glutamine-hydro 0.969 0.177 0.692 5e-47
307213208 718 GMP synthase [glutamine-hydrolyzing] [Ha 0.969 0.176 0.700 5e-47
383857453 717 PREDICTED: GMP synthase [glutamine-hydro 0.969 0.177 0.692 5e-47
340723652 718 PREDICTED: GMP synthase [glutamine-hydro 0.969 0.176 0.677 2e-46
>gi|270012865|gb|EFA09313.1| hypothetical protein TcasGA2_TC030725 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 110/127 (86%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           + +L L P + +L QGTLRPDLIESAS L S+KAD IKTHHNDS L+R LR +G+V+EPL
Sbjct: 346 ISDLNLKPEEVVLAQGTLRPDLIESASALVSSKADTIKTHHNDSELVRKLRSEGRVVEPL 405

Query: 61  KDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVE 120
           KDFHKDEVR LG DLGLTPE+VMRHPFPGPGLAIRV+C EE Y+E+D+SETQVLVKIIVE
Sbjct: 406 KDFHKDEVRALGRDLGLTPELVMRHPFPGPGLAIRVLCAEEPYMERDFSETQVLVKIIVE 465

Query: 121 YDQMFKK 127
           +DQM +K
Sbjct: 466 FDQMLQK 472

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189240082|ref|XP_001812886.1| PREDICTED: similar to gmp synthase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242013853|ref|XP_002427615.1| GMP synthase, putative [Pediculus humanus corporis] gi|212512030|gb|EEB14877.1| GMP synthase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|359843286|gb|AEV89778.1| glutamine amidotransferase, partial [Schistocerca gregaria] Back     alignment and taxonomy information
>gi|66522082|ref|XP_393336.2| PREDICTED: GMP synthase [glutamine-hydrolyzing] [Apis mellifera] Back     alignment and taxonomy information
>gi|380022491|ref|XP_003695077.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like isoform 2 [Apis florea] Back     alignment and taxonomy information
>gi|380022489|ref|XP_003695076.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like isoform 1 [Apis florea] Back     alignment and taxonomy information
>gi|307213208|gb|EFN88703.1| GMP synthase [glutamine-hydrolyzing] [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383857453|ref|XP_003704219.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340723652|ref|XP_003400203.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query131
ZFIN|ZDB-GENE-040426-1503 692 gmps "guanine monphosphate syn 0.954 0.180 0.68 4.8e-42
FB|FBgn0000239 720 bur "burgundy" [Drosophila mel 0.954 0.173 0.664 3e-41
UNIPROTKB|F8W720 594 GMPS "GMP synthase [glutamine- 0.954 0.210 0.672 5.9e-41
UNIPROTKB|F1NAQ8 693 GMPS "Uncharacterized protein" 0.954 0.180 0.672 8.4e-41
UNIPROTKB|J9NTM1 674 GMPS "Uncharacterized protein" 0.954 0.185 0.672 1.5e-40
UNIPROTKB|P49915 693 GMPS "GMP synthase [glutamine- 0.954 0.180 0.672 1.8e-40
UNIPROTKB|F1MC86 694 GMPS "Uncharacterized protein" 0.954 0.180 0.672 1.8e-40
UNIPROTKB|F1P9U2 705 GMPS "Uncharacterized protein" 0.954 0.177 0.672 2e-40
MGI|MGI:2448526 693 Gmps "guanine monophosphate sy 0.954 0.180 0.664 1.1e-39
RGD|1310063 693 Gmps "guanine monphosphate syn 0.954 0.180 0.664 1.1e-39
ZFIN|ZDB-GENE-040426-1503 gmps "guanine monphosphate synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 449 (163.1 bits), Expect = 4.8e-42, P = 4.8e-42
 Identities = 85/125 (68%), Positives = 100/125 (80%)

Query:     3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
             E+ L P    L QGTLRPDLIESASHLAS KA+VIKTHHND+ LIR LR++GKVIEPLKD
Sbjct:   353 EMNLKPEDVYLAQGTLRPDLIESASHLASGKAEVIKTHHNDTELIRKLRDEGKVIEPLKD 412

Query:    63 FHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYD 122
             FHKDEVR LG +LGL  E+V RHPFPGPGLAIRVIC +E Y+ KD++ET  ++KII ++ 
Sbjct:   413 FHKDEVRALGRELGLPEEIVSRHPFPGPGLAIRVICADEPYVCKDFAETNNILKIITDFS 472

Query:   123 QMFKK 127
                KK
Sbjct:   473 ASVKK 477
GO:0003922 "GMP synthase (glutamine-hydrolyzing) activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0006177 "GMP biosynthetic process" evidence=IEA
GO:0016462 "pyrophosphatase activity" evidence=IEA
GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
FB|FBgn0000239 bur "burgundy" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F8W720 GMPS "GMP synthase [glutamine-hydrolyzing]" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NAQ8 GMPS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9NTM1 GMPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P49915 GMPS "GMP synthase [glutamine-hydrolyzing]" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MC86 GMPS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9U2 GMPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2448526 Gmps "guanine monophosphate synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310063 Gmps "guanine monphosphate synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B2TXT2GUAA_SHIB36, ., 3, ., 5, ., 20.50450.77090.1923yesN/A
B1JDH6GUAA_PSEPW6, ., 3, ., 5, ., 20.50450.77090.1923yesN/A
Q2A3D4GUAA_FRATH6, ., 3, ., 5, ., 20.50900.78620.1996yesN/A
Q3K7D0GUAA_PSEPF6, ., 3, ., 5, ., 20.50450.77090.1923yesN/A
P32073GUAA_DICDI6, ., 3, ., 5, ., 20.57980.90070.1643yesN/A
Q4ZX09GUAA_PSEU26, ., 3, ., 5, ., 20.50450.77090.1923yesN/A
Q48LY0GUAA_PSE146, ., 3, ., 5, ., 20.50450.77090.1923yesN/A
A6W2W4GUAA_MARMS6, ., 3, ., 5, ., 20.51510.70220.1752yesN/A
P49915GUAA_HUMAN6, ., 3, ., 5, ., 20.6720.95410.1803yesN/A
Q886X5GUAA_PSESM6, ., 3, ., 5, ., 20.50450.77090.1923yesN/A
A4XY17GUAA_PSEMY6, ., 3, ., 5, ., 20.50450.77090.1923yesN/A
Q311X7GUAA_DESDG6, ., 3, ., 5, ., 20.55200.70220.1782yesN/A
Q4V7C6GUAA_RAT6, ., 3, ., 5, ., 20.6640.95410.1803yesN/A
Q5RA96GUAA_PONAB6, ., 3, ., 5, ., 20.6720.95410.1803yesN/A
Q09580GUAA_CAEEL6, ., 3, ., 5, ., 20.65680.77860.1369yesN/A
Q3THK7GUAA_MOUSE6, ., 3, ., 5, ., 20.6640.95410.1803yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.5LOW CONFIDENCE prediction!
3rd Layer6.3.5.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query131
cd01997295 cd01997, GMP_synthase_C, The C-terminal domain of 2e-44
PRK00074511 PRK00074, guaA, GMP synthase; Reviewed 7e-35
COG0519315 COG0519, GuaA, GMP synthase, PP-ATPase domain/subu 3e-30
TIGR00884311 TIGR00884, guaA_Cterm, GMP synthase (glutamine-hyd 5e-29
PLN02347536 PLN02347, PLN02347, GMP synthetase 2e-24
PRK00919307 PRK00919, PRK00919, GMP synthase subunit B; Valida 2e-22
>gnl|CDD|238955 cd01997, GMP_synthase_C, The C-terminal domain of GMP synthetase Back     alignment and domain information 
 Score =  146 bits (370), Expect = 2e-44
 Identities = 51/102 (50%), Positives = 64/102 (62%), Gaps = 7/102 (6%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
            ++L L      L QGTL PD+IES S   S  AD IK+HHN   L      + K+IEPL
Sbjct: 95  AKKLGLA---EYLAQGTLYPDVIESGSGKGS--ADTIKSHHNVGGLPE--DMKLKLIEPL 147

Query: 61  KDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEER 102
           +D  KDEVR+LG +LGL  E+V RHPFPGPGLA+R++     
Sbjct: 148 RDLFKDEVRELGRELGLPEEIVERHPFPGPGLAVRILGEVTE 189

It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes. Length = 295
>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed Back     alignment and domain information
>gnl|CDD|223593 COG0519, GuaA, GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|233169 TIGR00884, guaA_Cterm, GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit Back     alignment and domain information
>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase Back     alignment and domain information
>gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 131
COG0519315 GuaA GMP synthase, PP-ATPase domain/subunit [Nucle 100.0
KOG1622|consensus552 100.0
PLN02347536 GMP synthetase 99.98
cd01997295 GMP_synthase_C The C-terminal domain of GMP synthe 99.93
TIGR00884311 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C 99.93
PRK00919307 GMP synthase subunit B; Validated 99.89
PRK00074511 guaA GMP synthase; Reviewed 99.88
PF02540242 NAD_synthase: NAD synthase; InterPro: IPR022310 NA 99.59
PRK13980265 NAD synthetase; Provisional 99.51
PRK00876326 nadE NAD synthetase; Reviewed 99.44
PRK00768268 nadE NAD synthetase; Reviewed 99.37
cd00553248 NAD_synthase NAD+ synthase is a homodimer, which c 99.36
COG0171268 NadE NAD synthase [Coenzyme metabolism] 99.35
TIGR00552250 nadE NAD+ synthetase. NAD+ synthetase is a nearly 99.29
PTZ00323294 NAD+ synthase; Provisional 99.26
PRK13981540 NAD synthetase; Provisional 99.19
PRK02628679 nadE NAD synthetase; Reviewed 98.67
PLN02339700 NAD+ synthase (glutamine-hydrolysing) 98.22
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 96.9
cd01998 349 tRNA_Me_trans tRNA methyl transferase. This family 96.59
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 95.55
PF03054 356 tRNA_Me_trans: tRNA methyl transferase; InterPro: 95.46
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 95.41
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 95.11
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 94.61
KOG2805|consensus 377 94.23
cd01712177 ThiI ThiI is required for thiazole synthesis in th 93.89
PRK00143 346 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed 93.09
PRK08349198 hypothetical protein; Validated 92.87
TIGR00364201 exsB protein. This protein family is represented b 92.76
PRK14664 362 tRNA-specific 2-thiouridylase MnmA; Provisional 92.51
PRK14665 360 mnmA tRNA-specific 2-thiouridylase MnmA; Provision 92.39
PRK01565394 thiamine biosynthesis protein ThiI; Provisional 90.97
PRK11106231 queuosine biosynthesis protein QueC; Provisional 90.4
PF02568197 ThiI: Thiamine biosynthesis protein (ThiI); InterP 89.25
cd01995169 ExsB ExsB is a transcription regulator related pro 87.91
TIGR00420 352 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me 87.81
COG0482 356 TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid 87.36
cd01999 385 Argininosuccinate_Synthase Argininosuccinate synth 86.92
PRK14561194 hypothetical protein; Provisional 84.69
KOG2303|consensus706 81.47
PRK00509 399 argininosuccinate synthase; Provisional 81.25
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 80.74
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-44  Score=303.39  Aligned_cols=102  Identities=46%  Similarity=0.764  Sum_probs=89.7

Q ss_pred             CceeeccccccceeeccCCCCCCCCCccccccCCchHHHHHhhcccccccccccchHHHHHHHHHcCCChhhhccCCCCC
Q psy7153          10 QTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPG   89 (131)
Q Consensus        10 ~~~l~QGTiypD~iES~~~~~~~~a~~IKtHHNv~~l~~~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpG   89 (131)
                      ..||+|||||||||||++    +++.+|||||||||||++|+  ++++|||++|||||||+||++||||++|++||||||
T Consensus       122 ~~~LaQGTiYpDvIES~~----g~~~~IKSHHNVGGLP~~m~--lkLvEPLr~LfKDEVR~lg~~LGlp~~iv~RhPFPG  195 (315)
T COG0519         122 AEFLAQGTIYPDVIESGT----GKAGTIKSHHNVGGLPEDMK--LKLVEPLRELFKDEVRELGRELGLPEEIVYRHPFPG  195 (315)
T ss_pred             cceEEecccccceeeecC----CCCCccccccccCCCccccc--eeeeHHHHHHhHHHHHHHHHHhCCCHHHhccCCCCC
Confidence            789999999999999993    34589999999999999996  589999999999999999999999999999999999


Q ss_pred             CCceeeeccCcccccccChHHHHHHHHH
Q psy7153          90 PGLAIRVICGEERYIEKDYSETQVLVKI  117 (131)
Q Consensus        90 PGLaiR~~g~~e~~l~~~y~~~d~iL~~  117 (131)
                      |||||||+|.-.+|-..--.+.|.|+..
T Consensus       196 PGLaiRilGevt~Ekl~ilR~Ad~I~~e  223 (315)
T COG0519         196 PGLAVRILGEVTREKLEILREADAIVEE  223 (315)
T ss_pred             CCeEEEeecccCHHHHHHHHHHhHHHHH
Confidence            9999999999655544445555666544

>KOG1622|consensus Back     alignment and domain information
>PLN02347 GMP synthetase Back     alignment and domain information
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase Back     alignment and domain information
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit Back     alignment and domain information
>PRK00919 GMP synthase subunit B; Validated Back     alignment and domain information
>PRK00074 guaA GMP synthase; Reviewed Back     alignment and domain information
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6 Back     alignment and domain information
>PRK13980 NAD synthetase; Provisional Back     alignment and domain information
>PRK00876 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PRK00768 nadE NAD synthetase; Reviewed Back     alignment and domain information
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) Back     alignment and domain information
>COG0171 NadE NAD synthase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00552 nadE NAD+ synthetase Back     alignment and domain information
>PTZ00323 NAD+ synthase; Provisional Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>cd01998 tRNA_Me_trans tRNA methyl transferase Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2805|consensus Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed Back     alignment and domain information
>PRK08349 hypothetical protein; Validated Back     alignment and domain information
>TIGR00364 exsB protein Back     alignment and domain information
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>PRK01565 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>PRK11106 queuosine biosynthesis protein QueC; Provisional Back     alignment and domain information
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Back     alignment and domain information
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase Back     alignment and domain information
>PRK14561 hypothetical protein; Provisional Back     alignment and domain information
>KOG2303|consensus Back     alignment and domain information
>PRK00509 argininosuccinate synthase; Provisional Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query131
2vxo_A 697 Human Gmp Synthetase In Complex With Xmp Length = 6 3e-44
1gpm_A525 Escherichia Coli Gmp Synthetase Complexed With Amp 2e-20
3tqi_A527 Structure Of The Gmp Synthase (Guaa) From Coxiella 2e-20
3uow_A556 Crystal Structure Of Pf10_0123, A Gmp Synthetase Fr 3e-19
2ywb_A503 Crystal Structure Of Gmp Synthetase From Thermus Th 7e-15
2ywc_A503 Crystal Structure Of Gmp Synthetase From Thermus Th 7e-15
2dpl_A308 Crystal Structure Of The Gmp Synthase From Pyrococc 8e-15
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp Length = 697 Back     alignment and structure 
Iteration: 1

 Score =  173 bits (438), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 99/125 (79%)
Query: 3   ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
           E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct: 358 EMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 417
Query: 63  FHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYD 122
           FHKDEVR LG +LGL  E+V RHPFPGPGLAIRVIC EE YI KD+ ET  ++KI+ ++ 
Sbjct: 418 FHKDEVRILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFS 477
Query: 123 QMFKK 127
              KK
Sbjct: 478 ASVKK 482
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And Pyrophosphate Length = 525 Back     alignment and structure
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella Burnetii Length = 527 Back     alignment and structure
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From Plasmodium Falciparum Length = 556 Back     alignment and structure
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus Length = 503 Back     alignment and structure
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus In Complex With Xmp Length = 503 Back     alignment and structure
>pdb|2DPL|A Chain A, Crystal Structure Of The Gmp Synthase From Pyrococcus Horikoshii Ot3 Length = 308 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query131
2vxo_A 697 GMP synthase [glutamine-hydrolyzing]; proto-oncoge 4e-58
3uow_A556 GMP synthetase; structural genomics consortium, SG 1e-34
3tqi_A527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 7e-33
2ywb_A503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 1e-32
1gpm_A525 GMP synthetase, XMP aminase; class I glutamine ami 2e-32
2dpl_A308 GMP synthetase, GMP synthase [glutamine-hydrolyzin 9e-31
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697 Back     alignment and structure
 Score =  189 bits (483), Expect = 4e-58
 Identities = 84/127 (66%), Positives = 100/127 (78%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           + E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPL
Sbjct: 356 IGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPL 415

Query: 61  KDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVE 120
           KDFHKDEVR LG +LGL  E+V RHPFPGPGLAIRVIC EE YI KD+ ET  ++KI+ +
Sbjct: 416 KDFHKDEVRILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVAD 475

Query: 121 YDQMFKK 127
           +    KK
Sbjct: 476 FSASVKK 482
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556 Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527 Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503 Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525 Back     alignment and structure
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Length = 308 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query131
2vxo_A 697 GMP synthase [glutamine-hydrolyzing]; proto-oncoge 99.94
3uow_A556 GMP synthetase; structural genomics consortium, SG 99.93
1gpm_A525 GMP synthetase, XMP aminase; class I glutamine ami 99.88
2ywb_A503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 99.83
3tqi_A527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 99.81
2dpl_A308 GMP synthetase, GMP synthase [glutamine-hydrolyzin 99.8
1kqp_A271 NAD+ synthase, NH(3)-dependent NAD(+) synthetase, 99.42
1wxi_A275 NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l 99.41
3q4g_A279 NH(3)-dependent NAD(+) synthetase; structural geno 99.32
3fiu_A249 NH(3)-dependent NAD(+) synthetase; rossman fold, a 99.29
3p52_A249 NH(3)-dependent NAD(+) synthetase; structural geno 99.27
3dpi_A285 NAD+ synthetase; ssgcid, decode, structural genomi 99.14
3ilv_A634 Glutamine-dependent NAD(+) synthetase; protein str 99.14
3n05_A590 NH(3)-dependent NAD(+) synthetase; ligase, structu 99.12
2e18_A257 NH(3)-dependent NAD(+) synthetase; ligase, structu 99.02
1xng_A268 NH(3)-dependent NAD(+) synthetase; amidotransferas 98.97
3sdb_A680 Glutamine-dependent NAD(+) synthetase; glutamine-a 98.9
4f4h_A565 Glutamine dependent NAD+ synthetase; structural ge 98.73
3bl5_A219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 96.76
2c5s_A413 THII, probable thiamine biosynthesis protein THII; 96.24
2hma_A 376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 95.29
2der_A 380 TRNA-specific 2-thiouridylase MNMA; protein-RNA co 93.72
2pg3_A232 Queuosine biosynthesis protein QUEC; YP_049261.1, 91.3
3k32_A203 Uncharacterized protein MJ0690; predicted subunit 89.49
1sur_A215 PAPS reductase; assimilatory sulfate reduction, 3- 88.05
1vl2_A 421 Argininosuccinate synthase; TM1780, structural gen 85.09
1vbk_A307 Hypothetical protein PH1313; structural genomics, 85.05
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Back     alignment and structure
Probab=99.94  E-value=1.4e-27  Score=214.00  Aligned_cols=122  Identities=66%  Similarity=1.078  Sum_probs=107.1

Q ss_pred             CCCCCCCceeeccccccceeeccCCCCCCCCCccccccCCchHHHHHhhcccccccccccchHHHHHHHHHcCCChhhhc
Q psy7153           4 LKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVM   83 (131)
Q Consensus         4 ~~~~~~~~~l~QGTiypD~iES~~~~~~~~a~~IKtHHNv~~l~~~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~   83 (131)
                      ++.+.+..||+|||.|||+|||......+.+++||+|||+++++..+...+++++||++|+|+|||++|++||+|.++++
T Consensus       359 ~g~~~~~~~LatG~~~~D~iEs~~~~l~~g~~~iks~~nv~g~~~~~~~~~~~i~PL~~L~K~EVr~la~~lGlP~~i~~  438 (697)
T 2vxo_A          359 MNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGLPEELVS  438 (697)
T ss_dssp             TCCCTTSEEEECCCSSCCSBCCHHHHHHSCCCGGGSCCSSCHHHHHHHHTTCEECGGGGSCHHHHHHHHHHTTCCHHHHT
T ss_pred             cCCCcccEEEEEeccChhhhhhhhhhhhcCccccccccccchhhHHhccCCEEEEecccCCHHHHHHHHHHcCCCcceee
Confidence            34444566999999999999997533234578899999999999988765689999999999999999999999999999


Q ss_pred             cCCCCCCCceeeeccCcccccccChHHHHHHHHHHHhhhhhh
Q psy7153          84 RHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMF  125 (131)
Q Consensus        84 k~PfpGPGLaiR~~g~~e~~l~~~y~~~d~iL~~~~~~~~~~  125 (131)
                      |+|||||||++|+.+.+|.++|.+|+++|.+|+...++....
T Consensus       439 r~Ps~gpgL~~r~~~~de~~~g~~Y~~ld~iL~~~~~~~~el  480 (697)
T 2vxo_A          439 RHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFSASV  480 (697)
T ss_dssp             CCCCCTTGGGGGBCCBSSCCCCTTHHHHHHHHHHHHTHHHHT
T ss_pred             CCCCCCCccccCccccchhhhcCCHHHHHHHHHHHhhhHHHH
Confidence            999999999999998899999999999999999988755554
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Back     alignment and structure
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Back     alignment and structure
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A Back     alignment and structure
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A* Back     alignment and structure
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0 Back     alignment and structure
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Back     alignment and structure
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0 Back     alignment and structure
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0 Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Back     alignment and structure
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Back     alignment and structure
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 Back     alignment and structure
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 Back     alignment and structure
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Back     alignment and structure
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 131
d1gpma1197 c.26.2.1 (A:208-404) GMP synthetase, central domai 5e-12
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Length = 197 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: GMP synthetase, central domain
species: Escherichia coli [TaxId: 562]

 Score = 58.2 bits (139), Expect = 5e-12
 Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query: 28  HLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPF 87
             A+ KA VIK+HHN   L + +  +  ++EPLK+  KDEVRK+GL+LGL  +++ RHPF
Sbjct: 139 ASATGKAHVIKSHHNVGGLPKEM--KMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPF 196

Query: 88  P 88
           P
Sbjct: 197 P 197

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query131
d1xnga1255 NH3-dependent NAD+-synthetase {Helicobacter pylori 99.69
d1wxia1274 NH3-dependent NAD+-synthetase {Escherichia coli [T 99.48
d1kqpa_271 NH3-dependent NAD+-synthetase {Bacillus subtilis [ 99.41
d1gpma1197 GMP synthetase, central domain {Escherichia coli [ 99.29
d1gpma3121 GMP synthetase C-terminal dimerisation domain {Esc 96.28
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 95.16
d1j20a1165 Argininosuccinate synthetase, N-terminal domain {T 87.23
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 81.95
d1vl2a1168 Argininosuccinate synthetase, N-terminal domain {T 80.98
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Helicobacter pylori [TaxId: 210]

Probab=99.69  E-value=4e-18  Score=133.17  Aligned_cols=81  Identities=21%  Similarity=0.284  Sum_probs=72.1

Q ss_pred             CCCCCccccccCCchHHHHHhhcccccccccccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccccChH
Q psy7153          31 SNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYS  109 (131)
Q Consensus        31 ~~~a~~IKtHHNv~~l~~~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~  109 (131)
                      .+.++..++||+.+.+..++   ..+++||++|||+|||+||++||||++|++|+||||  |   |.||+ |.++|++|+
T Consensus       128 ~gt~n~~e~~~g~~t~~gd~---~~~l~Pl~dL~K~eVr~LA~~lglP~~i~~k~ps~~--L---~~~q~de~~lg~~Y~  199 (255)
T d1xnga1         128 IGTSNKSERMLGYGTLFGDL---ACAINPIGELFKTEVYELARRLNIPKKILNKPPSAD--L---FVGQSDEKDLGYPYS  199 (255)
T ss_dssp             BCCCCHHHHHHTCSCTTTTT---CCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCCC--S---STTCCHHHHHSSCHH
T ss_pred             CCCccHHHHhccccchhhhh---ccchhhhcCcCHHHHHHHHHHcCCchhhhcCCCCcc--c---ccccCcHhhhCCChH
Confidence            34567788999998887665   369999999999999999999999999999999999  8   68996 999999999


Q ss_pred             HHHHHHHHHH
Q psy7153         110 ETQVLVKIIV  119 (131)
Q Consensus       110 ~~d~iL~~~~  119 (131)
                      ++|.+|+.+.
T Consensus       200 ~lD~~l~~~~  209 (255)
T d1xnga1         200 VIDPLLKDIE  209 (255)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure