Psyllid ID: psy71

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTGKFHVG
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccEEEEHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHHHccccEEcHHHHHHHHHccHHHHHHcHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHcccccHHHHccccEEEc
Coil and Loop (DISEMBL)
vlelagnaskdlkvkritpRHLQLAIRGDEELDSLIKATIAggarfglypevrrdgpalsyvTSASTVFFTNLSLMITELqkvafpstgECAAAFVVWATREFNLFVSHVIRELFVTqsslstlspCIAAVSAKCDQLTSLGLDLRYLLdgalrsplTKTLKETRDKLSDTIKLRcaedrwkpynlnnrqQRDKFLTEFTDAGLTSMSSYLTGKFHVG
Flexible Loop (DISEMBL)
vlelagnaskdlkvkritprhlqlairgdeelDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGalrspltktlketrdklsdtiklrcaedrwkpynlnnrqqrDKFLTEFTDAgltsmssyltgkfhvg
Low Complexity Region (SEG)
VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTGKFHVG
Disordered region (IsUnstruct)
****************ITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGL**************
Disordered Region (DISOPRED)
VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPE**********VTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTGKFHVG
Disordered Region (DISEMBL)
VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTGKFHVG
Disordered Region (DISPRO)
VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTGKFHVG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTGKFHVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q5BJ65	128	Histone H2A.V OS=Xenopus	yes	N/A	0.233	0.398	0.833	3e-18
Q6GM74	128	Histone H2A.V OS=Xenopus	N/A	N/A	0.233	0.398	0.833	3e-18
Q6Y237	128	Histone H2A.V OS=Pagrus m	N/A	N/A	0.233	0.398	0.833	3e-18
Q3THW5	128	Histone H2A.V OS=Mus musc	yes	N/A	0.233	0.398	0.833	3e-18
Q71UI9	128	Histone H2A.V OS=Homo sap	yes	N/A	0.233	0.398	0.833	3e-18
Q71PD7	128	Histone H2A.V OS=Danio re	yes	N/A	0.233	0.398	0.833	3e-18
P02272	128	Histone H2A.V OS=Gallus g	yes	N/A	0.233	0.398	0.833	3e-18
Q32LA7	128	Histone H2A.V OS=Bos taur	yes	N/A	0.233	0.398	0.833	3e-18
Q5ZMD6	128	Histone H2A.Z OS=Gallus g	yes	N/A	0.233	0.398	0.833	3e-18
Q6YNC8	128	Histone H2A.Z OS=Ovis ari	N/A	N/A	0.233	0.398	0.833	3e-18

>sp|Q5BJ65|H2AV_XENTR Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division.
Xenopus tropicalis (taxid: 8364)

>sp|Q6GM74|H2AV_XENLA Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division.

Xenopus laevis (taxid: 8355)

>sp|Q6Y237|H2AV_PAGMA Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division.

Pagrus major (taxid: 143350)

>sp|Q3THW5|H2AV_MOUSE Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division.

Mus musculus (taxid: 10090)

>sp|Q71UI9|H2AV_HUMAN Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division.

Homo sapiens (taxid: 9606)

>sp|Q71PD7|H2AV_DANRE Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division.

Danio rerio (taxid: 7955)

>sp|P02272|H2AV_CHICK Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division.

Gallus gallus (taxid: 9031)

>sp|Q32LA7|H2AV_BOVIN Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division.

Bos taurus (taxid: 9913)

>sp|Q5ZMD6|H2AZ_CHICK Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Gallus gallus (taxid: 9031)

>sp|Q6YNC8|H2AZ_SHEEP Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division.

Ovis aries (taxid: 9940)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
193624908	684	PREDICTED: exocyst complex component 8-l	0.747	0.238	0.404	6e-34
380017197	709	PREDICTED: exocyst complex component 8-l	0.738	0.227	0.432	1e-33
328778551	709	PREDICTED: exocyst complex component 8 [	0.738	0.227	0.419	2e-32
383851215	709	PREDICTED: exocyst complex component 8-l	0.738	0.227	0.401	4e-31
307196747	710	Exocyst complex component 8 [Harpegnatho	0.738	0.226	0.407	5e-31
189237923	700	PREDICTED: similar to exocyst complex 84	0.733	0.228	0.438	6e-31
270008025	637	hypothetical protein TcasGA2_TC014777 [T	0.733	0.251	0.438	7e-31
340727044	723	PREDICTED: exocyst complex component 8-l	0.756	0.228	0.385	1e-30
350403362	723	PREDICTED: exocyst complex component 8-l	0.756	0.228	0.385	2e-30
307186252	710	Exocyst complex component 8 [Camponotus	0.738	0.226	0.395	3e-30

>gi|193624908|ref|XP_001950703.1| PREDICTED: exocyst complex component 8-like [Acyrthosiphon pisum]

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/163 (40%), Positives = 105/163 (64%)

Query: 52  VRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVI 111
           V+RDG   ++V   S VFF     +  E    AFP++  C++AF++W  +E N F+  + 
Sbjct: 406 VKRDGAMSTFVKKYSMVFFGTTIEITHEFLYKAFPNSSACSSAFILWTIQEVNDFMVILN 465

Query: 112 RELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT 171
           + +FV Q+SLS LS CI  +   C +L   G+DL++ +DG LR PLTK++ + +DK  + 
Sbjct: 466 KHMFVPQTSLSNLSECIKVIHKNCQELCDYGIDLQFQIDGQLRIPLTKSINDIKDKTIEV 525

Query: 172 IKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTGK 214
           IK+R +ED+WKP+NL  +QQRDK + E+T+ G +++ SY  G+
Sbjct: 526 IKIRFSEDKWKPFNLKTKQQRDKIVEEYTNYGFSNIESYNKGE 568

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017197|ref|XP_003692547.1| PREDICTED: exocyst complex component 8-like [Apis florea]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 101/162 (62%), Gaps = 1/162 (0%)

Query: 52  VRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVI 111
           V+R+G    YV   S + F+N+  +  E  K+ FP +  C +  V+W ++E     +H+ 
Sbjct: 419 VKREGAIAPYVKQLSAIAFSNIVEITKEFLKL-FPQSTNCTSGLVLWCSQEVKYLTTHLT 477

Query: 112 RELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT 171
           ++LF+ Q SLSTL  CI  V + CDQLT LG+D RY LDG LRSPL K +++T +K  DT
Sbjct: 478 KQLFIPQVSLSTLVECIVCVRSHCDQLTQLGMDFRYQLDGQLRSPLAKAIQDTGEKYVDT 537

Query: 172 IKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTG 213
           +K   A+D W+P NL + +   KFL+EF D G+T  SSY+T 
Sbjct: 538 VKEYIAKDTWRPTNLESCKNVQKFLSEFDDLGITVPSSYITN 579

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778551|ref|XP_003249516.1| PREDICTED: exocyst complex component 8 [Apis mellifera]

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 52  VRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVI 111
           V+R+G    YV   S + F+N+  +  E  K+ FP +  C +  V+W ++E     +H+ 
Sbjct: 419 VKREGAIAPYVKQLSAIAFSNIVEITKEFLKL-FPQSTNCTSGLVLWCSQEVKYLTTHLT 477

Query: 112 RELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT 171
           ++LF+ Q SLS L  CI  V + CDQLT LG+D RY LDG LRSPL K +++T +K  DT
Sbjct: 478 KQLFIPQVSLSILVECIVCVRSHCDQLTQLGMDFRYQLDGQLRSPLAKAIQDTGEKYIDT 537

Query: 172 IKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTG 213
           +K   A+D W+P NL + +   KFL EF D G++  SSY+T 
Sbjct: 538 VKEYIAKDTWRPTNLESCKNVQKFLLEFDDLGISVPSSYITN 579

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851215|ref|XP_003701134.1| PREDICTED: exocyst complex component 8-like [Megachile rotundata]

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 96/162 (59%), Gaps = 1/162 (0%)

Query: 52  VRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVI 111
           V+R+G    YV   S + F+N+  +  E  K+ FP +  C +  VVW ++E     +H+ 
Sbjct: 418 VKREGAVSPYVKQLSAIAFSNIVEIAKEFLKI-FPQSTNCTSGLVVWCSQEVKHLTTHLT 476

Query: 112 RELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT 171
           +++F  Q SLSTL  CI +V + CDQLT LG+D RY LDG LRSPL K +++  +K  D 
Sbjct: 477 KQIFTPQVSLSTLVECIVSVRSHCDQLTQLGMDFRYQLDGQLRSPLAKAIQDAGEKYVDI 536

Query: 172 IKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTG 213
           +K+  AED W+P +L   +   K L+E  D G+T  S Y+T 
Sbjct: 537 VKVHIAEDTWRPKSLETNKNLQKLLSELDDLGITVPSFYVTN 578

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196747|gb|EFN78206.1| Exocyst complex component 8 [Harpegnathos saltator]

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 95/162 (58%), Gaps = 1/162 (0%)

Query: 52  VRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVI 111
           ++R+G  ++YV   S + F+N+  +  E  K  FP +  C +  V+W ++E     SH+ 
Sbjct: 419 IKREGTTVAYVKQLSAIAFSNIVEIAREFLKT-FPQSTNCTSGLVLWCSQEVKHLTSHLA 477

Query: 112 RELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT 171
           ++LF+ Q +LSTL  CI  V + CDQLT LG+D RY LDG LRSPL K +++  +    T
Sbjct: 478 KQLFLPQVTLSTLVECIVTVRSHCDQLTQLGMDFRYQLDGQLRSPLAKAIQDAGENCVGT 537

Query: 172 IKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTG 213
           +KL  AED W+P NL   Q   KFL+E  D G+    SY T 
Sbjct: 538 VKLHVAEDTWRPTNLETSQNLQKFLSELEDLGIGIPPSYSTN 579

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237923|ref|XP_001810409.1| PREDICTED: similar to exocyst complex 84-kDa subunit [Tribolium castaneum]

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 108/162 (66%), Gaps = 2/162 (1%)

Query: 52  VRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVI 111
           V+R+   + YV   S+V FTN+  M  E  + AFPS+  C++A+VVWA+ E ++F +H I
Sbjct: 414 VKRECSTVMYVRHLSSVVFTNMCHMTEEFLR-AFPSSSSCSSAYVVWASNELSVFTTHFI 472

Query: 112 RELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT 171
           +++F+ Q+SLSTL+ C+    ++C++L S G+DL Y LDGALR+ L + LK+ RDK  + 
Sbjct: 473 KQVFMPQTSLSTLTECVVLARSQCERLCSFGVDLCYQLDGALRTSLMQALKDARDKSIEV 532

Query: 172 IKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTG 213
            KLR  ED+W P NL  +    +FL E++D GL  + SY+TG
Sbjct: 533 AKLRALEDKWIPMNLRTKTALARFLQEYSDLGL-KVDSYVTG 573

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008025|gb|EFA04473.1| hypothetical protein TcasGA2_TC014777 [Tribolium castaneum]

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 108/162 (66%), Gaps = 2/162 (1%)

Query: 52  VRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVI 111
           V+R+   + YV   S+V FTN+  M  E  + AFPS+  C++A+VVWA+ E ++F +H I
Sbjct: 414 VKRECSTVMYVRHLSSVVFTNMCHMTEEFLR-AFPSSSSCSSAYVVWASNELSVFTTHFI 472

Query: 112 RELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT 171
           +++F+ Q+SLSTL+ C+    ++C++L S G+DL Y LDGALR+ L + LK+ RDK  + 
Sbjct: 473 KQVFMPQTSLSTLTECVVLARSQCERLCSFGVDLCYQLDGALRTSLMQALKDARDKSIEV 532

Query: 172 IKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTG 213
            KLR  ED+W P NL  +    +FL E++D GL  + SY+TG
Sbjct: 533 AKLRALEDKWIPMNLRTKTALARFLQEYSDLGL-KVDSYVTG 573

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727044|ref|XP_003401861.1| PREDICTED: exocyst complex component 8-like [Bombus terrestris]

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 96/166 (57%), Gaps = 1/166 (0%)

Query: 52  VRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVI 111
           V+ +G    YV   S + F+N+  +  E  K+ FP +  C +  VVW ++E     +H+ 
Sbjct: 432 VKSEGATTPYVKQLSAIAFSNIVEITKEFLKI-FPQSTNCTSGLVVWCSQEVKYLTTHLT 490

Query: 112 RELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT 171
           ++LF+ Q SL+TL  CI  V + CDQLT LG+D RY LDG LR+PL K +++T +K  + 
Sbjct: 491 KQLFIPQVSLNTLVECIVCVRSHCDQLTQLGMDFRYQLDGQLRTPLAKAIQDTGEKYVEI 550

Query: 172 IKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTGKFHV 217
           +K   AED W+P NL   +   K L+EF   G+T   SYL   + +
Sbjct: 551 VKKHIAEDMWRPTNLETCKNVQKLLSEFDGLGITVPQSYLKNDYWI 596

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403362|ref|XP_003486779.1| PREDICTED: exocyst complex component 8-like [Bombus impatiens]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 96/166 (57%), Gaps = 1/166 (0%)

Query: 52  VRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVI 111
           V+ +G    YV   S + F+N+  +  E  K+ FP +  C +  VVW ++E     +H+ 
Sbjct: 432 VKGEGATAPYVKQLSAIAFSNIVEITKEFLKI-FPQSTNCTSGLVVWCSQEVKYLTTHLT 490

Query: 112 RELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT 171
           ++LF+ Q SL+TL  CI  V + CDQLT LG+D RY LDG LR+PL K +++T +K  + 
Sbjct: 491 KQLFIPQVSLNTLVECIVCVRSHCDQLTQLGMDFRYQLDGQLRTPLAKAIQDTGEKYVEI 550

Query: 172 IKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTGKFHV 217
           +K   AED W+P NL   +   K L+EF   G+T   SYL   + +
Sbjct: 551 VKKHIAEDMWRPTNLETCKNVQKLLSEFDGLGITVPQSYLKNDYWI 596

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186252|gb|EFN71915.1| Exocyst complex component 8 [Camponotus floridanus]

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 92/162 (56%), Gaps = 1/162 (0%)

Query: 52  VRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVI 111
           ++R+   ++YV   S + F+N+  +  E  K  FP +  C +  +VW ++E     SH+ 
Sbjct: 419 IKRESTTMAYVKQLSAIAFSNIVEIAREFLKT-FPQSANCTSGLIVWCSQEVKHLTSHLA 477

Query: 112 RELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT 171
            +LFV Q +LS L  CI AV   CDQLT LG+D RY LDG +RSPL K +++  +   DT
Sbjct: 478 EQLFVPQITLSVLVECIVAVRGHCDQLTQLGMDFRYQLDGQIRSPLAKAIQDAGESCVDT 537

Query: 172 IKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTG 213
           +K   AED W+P NL   Q   K L+E  + G+   SSY T 
Sbjct: 538 MKRHVAEDTWRPTNLETSQNLQKLLSELDELGIGVPSSYATN 579

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
ZFIN|ZDB-GENE-070410-60	684	exoc8 "exocyst complex compone	0.743	0.236	0.298	1.7e-18
FB|FBgn0001197	141	His2Av "Histone H2A variant" [	0.233	0.361	0.833	2e-17
UNIPROTKB|F2Z4M5	127	H2AFZ "Histone H2A" [Gallus ga	0.233	0.401	0.833	2e-17
UNIPROTKB|P02272	128	H2AFV "Histone H2A.V" [Gallus	0.233	0.398	0.833	2e-17
UNIPROTKB|Q5ZMD6	128	H2AFZ "Histone H2A.Z" [Gallus	0.233	0.398	0.833	2e-17
UNIPROTKB|F1MT45	106	H2AFZ "Histone H2A" [Bos tauru	0.233	0.481	0.833	2e-17
UNIPROTKB|P0C0S4	128	H2AFZ "Histone H2A.Z" [Bos tau	0.233	0.398	0.833	2e-17
UNIPROTKB|Q32LA7	128	H2AFV "Histone H2A.V" [Bos tau	0.233	0.398	0.833	2e-17
UNIPROTKB|E2R678	128	H2AFZ "Uncharacterized protein	0.233	0.398	0.833	2e-17
UNIPROTKB|F6X834	128	H2AFZ "Histone H2A" [Canis lup	0.233	0.398	0.833	2e-17

ZFIN|ZDB-GENE-070410-60 exoc8 "exocyst complex component 8" [Danio rerio (taxid:7955)]

 Score = 219 (82.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 49/164 (29%), Positives = 82/164 (50%)

Query:    51 EVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHV 110
             ++R +G  L Y+     +FFT+L     E +      TG C +AFVVW+     +FV   
Sbjct:   405 QLRIEGATLLYIQKLCNIFFTSLLETAREFETDFAGDTG-CYSAFVVWSRSVMKMFVDAF 463

Query:   111 IRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSD 170
              +++F ++ SLST + C+   S  C QL+ +GLDL ++L   L   +   L+  +D + +
Sbjct:   464 SKQVFDSKESLSTAAECVKFASEHCKQLSEIGLDLTFILQSLLVKDIRAALQSQKDIIIE 523

Query:   171 TIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTGK 214
               + R +E+ W+  NL   +   K   E    G+ S   Y TG+
Sbjct:   524 ATRHRNSEEMWRRMNLMTPEALAKLKEEMRSCGIGSFEQY-TGE 566

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

FB|FBgn0001197 His2Av "Histone H2A variant" [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query:     1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
             VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct:    66 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

GO:0000786 "nucleosome" evidence=IEA;NAS

GO:0006333 "chromatin assembly or disassembly" evidence=NAS

GO:0003677 "DNA binding" evidence=IEA;NAS

GO:0005694 "chromosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005700 "polytene chromosome" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0071168 "protein localization to chromatin" evidence=IDA

UNIPROTKB|F2Z4M5 H2AFZ "Histone H2A" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query:     1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
             VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct:    65 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 115

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P02272 H2AFV "Histone H2A.V" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query:     1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
             VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct:    66 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5ZMD6 H2AFZ "Histone H2A.Z" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query:     1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
             VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct:    66 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MT45 H2AFZ "Histone H2A" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query:     1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
             VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct:    44 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 94

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|P0C0S4 H2AFZ "Histone H2A.Z" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query:     1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
             VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct:    66 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|Q32LA7 H2AFV "Histone H2A.V" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query:     1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
             VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct:    66 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|E2R678 H2AFZ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query:     1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
             VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct:    66 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

UNIPROTKB|F6X834 H2AFZ "Histone H2A" [Canis lupus familiaris (taxid:9615)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query:     1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
             VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct:    66 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P08991	H2AV_STRPU	No assigned EC number	0.8333	0.2339	0.408	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	218
PLN00154	136	PLN00154, PLN00154, histone H2A; Provisional	1e-25
PTZ00017	134	PTZ00017, PTZ00017, histone H2A; Provisional	3e-23
cd00074	115	cd00074, H2A, Histone 2A; H2A is a subunit of the	6e-20
COG5262	132	COG5262, HTA1, Histone H2A [Chromatin structure an	5e-18
smart00414	106	smart00414, H2A, Histone 2A	3e-17
PLN00157	132	PLN00157, PLN00157, histone H2A; Provisional	4e-13
PLN00156	139	PLN00156, PLN00156, histone H2AX; Provisional	6e-12
PLN00153	129	PLN00153, PLN00153, histone H2A; Provisional	6e-11
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	3e-05

>gnl|CDD|177756 PLN00154, PLN00154, histone H2A; Provisional

 Score = 96.6 bits (240), Expect = 1e-25
 Identities = 43/54 (79%), Positives = 47/54 (87%), Gaps = 3/54 (5%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGG   G+ P + +
Sbjct: 77  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG---GVIPHIHK 127

Length = 136

>gnl|CDD|185399 PTZ00017, PTZ00017, histone H2A; Provisional

 Score = 90.6 bits (225), Expect = 3e-23
 Identities = 34/53 (64%), Positives = 40/53 (75%), Gaps = 4/53 (7%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEV 52
           VLELAGNA+KD K KRITPRH+QLAIR DEEL+ L+   TIA G   G+ P +
Sbjct: 65  VLELAGNAAKDNKKKRITPRHIQLAIRNDEELNKLLAGVTIASG---GVLPNI 114

Length = 134

>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome

 Score = 80.8 bits (200), Expect = 6e-20
 Identities = 32/44 (72%), Positives = 37/44 (84%), Gaps = 1/44 (2%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 43
           VLELAGNA++D K KRITPRHLQLA+R DEEL+ L+K  TIA G
Sbjct: 58  VLELAGNAARDNKKKRITPRHLQLAVRNDEELNKLLKGVTIASG 101

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins. Length = 115

>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics]

 Score = 76.8 bits (189), Expect = 5e-18
 Identities = 30/44 (68%), Positives = 35/44 (79%), Gaps = 1/44 (2%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 43
           +LELAGNA++D K KRI PRHLQLAIR DEEL+ L+   TIA G
Sbjct: 64  ILELAGNAARDNKKKRIIPRHLQLAIRNDEELNKLLGDVTIAQG 107

Length = 132

>gnl|CDD|197711 smart00414, H2A, Histone 2A

 Score = 73.9 bits (182), Expect = 3e-17
 Identities = 32/44 (72%), Positives = 37/44 (84%), Gaps = 1/44 (2%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAGG 43
          VLELAGNA++D K +RITPRHLQLAIR DEEL+ L+K  TIA G
Sbjct: 47 VLELAGNAARDNKKRRITPRHLQLAIRNDEELNKLLKGVTIAQG 90

Length = 106

>gnl|CDD|177758 PLN00157, PLN00157, histone H2A; Provisional

 Score = 63.3 bits (154), Expect = 4e-13
 Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 4/53 (7%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV 52
           VLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA G   G+ P +
Sbjct: 64  VLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGGVTIAAG---GVLPNI 113

Length = 132

>gnl|CDD|215080 PLN00156, PLN00156, histone H2AX; Provisional

 Score = 60.8 bits (147), Expect = 6e-12
 Identities = 30/53 (56%), Positives = 38/53 (71%), Gaps = 4/53 (7%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAGGARFGLYPEV 52
           VLELAGNA++D K  RI PRH+QLA+R DEEL  L+ + TIA G   G+ P +
Sbjct: 67  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAAG---GVLPNI 116

Length = 139

>gnl|CDD|165721 PLN00153, PLN00153, histone H2A; Provisional

 Score = 57.8 bits (139), Expect = 6e-11
 Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 4/53 (7%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEV 52
           VLELAGNA++D K  RI PRH+QLAIR DEEL  L+ + TIA G   G+ P +
Sbjct: 62  VLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASG---GVLPNI 111

Length = 129

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGD 29
          +LE AG  ++  K K ITPR +QLA+R D
Sbjct: 47 ILEDAGLLARHAKRKTITPRDIQLAVRLD 75

Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG1757|consensus	131		99.76
PLN00154	136	histone H2A; Provisional	99.75
KOG2215|consensus	673		99.72
PLN00153	129	histone H2A; Provisional	99.72
PTZ00252	134	histone H2A; Provisional	99.71
COG5262	132	HTA1 Histone H2A [Chromatin structure and dynamics	99.71
PLN00156	139	histone H2AX; Provisional	99.71
KOG1756|consensus	131		99.71
PTZ00017	134	histone H2A; Provisional	99.7
PLN00157	132	histone H2A; Provisional	99.7
smart00414	106	H2A Histone 2A.	99.66
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	99.63
KOG2215|consensus	673		98.12
PF04124	338	Dor1: Dor1-like family ; InterPro: IPR007255 Dor1	97.34
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	97.05
KOG2069|consensus	581		84.26
COG5247	113	BUR6 Class 2 transcription repressor NC2, alpha su	81.11

>KOG1757|consensus

Probab=99.76  E-value=8e-20  Score=142.23  Aligned_cols=51  Identities=82%  Similarity=1.079  Sum_probs=49.3

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHHHHhcCCcccCCCCc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPE   51 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~~tia~~gv~~~~r~   51 (218)
                      |||||||+++|.|.+||||||+|||||.||||+.|++.|||+|||||++++
T Consensus        69 VLeLAgNasKdLKvKRitprHlqLAiRGDeELDtLIk~TiagGgViPhihk  119 (131)
T KOG1757|consen   69 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHK  119 (131)
T ss_pred             HHHHcccccccceeeeccchhheeeecCcHHHHHHHHHhhccCccccchHH
Confidence            689999999999999999999999999999999999999999999999765

>PLN00154 histone H2A; Provisional

Probab=99.75  E-value=2.2e-19  Score=144.47  Aligned_cols=52  Identities=79%  Similarity=1.039  Sum_probs=49.6

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHHHHhcCCcccCCCCcc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEV   52 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~~tia~~gv~~~~r~l   52 (218)
                      |||||||+|+|++++||||||+++||+||+||++||++|||+|||+|+++.+
T Consensus        77 VLELAGNaA~d~kk~RItPrHi~lAIrnDeEL~~Ll~~TIa~GGVlP~i~~~  128 (136)
T PLN00154         77 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKS  128 (136)
T ss_pred             HHHHHHHHHHhhCCceecHHHhhhhccCcHHHHHHhcCCccCCccCCCcchh
Confidence            6999999999999999999999999999999999999999999999997653

>KOG2215|consensus

Probab=99.72  E-value=8.2e-18  Score=164.21  Aligned_cols=166  Identities=18%  Similarity=0.248  Sum_probs=147.0

Q ss_pred             CCcccccCcchhhHHHHHHH---HHHHHHHHHHHHHHhhCCCCcchhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHH
Q psy71            49 YPEVRRDGPALSYVTSASTV---FFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLS  125 (218)
Q Consensus        49 ~r~l~~eG~~~~Yi~~Ls~v---~Ft~I~~t~~ef~~~~F~~~~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~a  125 (218)
                      +|.... ++...|++..|.+   +++.+.+.+.++. . |...|.|....++|+..+++.|...+.|+.-...++.++++
T Consensus       380 ~~s~~~-~a~~~~~~~~~~r~~~~~~d~~~~l~~~~-~-~e~~s~~~~~~~q~~~~~ldtl~~~l~~s~~e~~~~~s~~a  456 (673)
T KOG2215|consen  380 KHSESL-SAYRCRDTDEASRFLQVVQDFSEDLCDIL-K-FEQGSKCLYTSFQVLNKELDTLGRQLPRSYEEQGPARSMVA  456 (673)
T ss_pred             HHHHHH-HHHHhhhhhhhHHHHHHHHHHHHHHHHHh-h-hccchHHHHHHHHHHHHHHHHHHHHcccchhhcCchHHHHH
Confidence            334444 5555555555544   4666777777787 6 88888899999999999999999999999988888899999


Q ss_pred             HHHHHHHHHHhhhhhccCCcHHHHhhhccccHHHH--HHHHHHHHHHHHhhhhh-cCCcccCCCCCHHHHHHHHHHHhhc
Q psy71           126 PCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKT--LKETRDKLSDTIKLRCA-EDRWKPYNLNNRQQRDKFLTEFTDA  202 (218)
Q Consensus       126 eCi~i~~~hc~~L~evGLDl~flL~~lLr~~ie~a--l~~~~~~i~e~v~~r~~-ed~W~~~nl~~~~~~~k~~~e~~~l  202 (218)
                      +|++.+..||.+|...|+|+++.++.++|..++.+  ++.+++-|+|++++|.+ +|+|+|++++|+++++++.+||+++
T Consensus       457 ~iv~~a~~~~~qL~~ig~~lt~~~~~Llr~~le~s~~l~~~~E~~~~ald~r~~~ee~W~~~~L~t~s~Lk~l~ee~~~~  536 (673)
T KOG2215|consen  457 EIVKRAEHTSEQLTLIGLDLTIRDEALLRSKLESSQLLEGFKEGIADALDNRNREEESWVRYLLQTESALKDLSEELSDL  536 (673)
T ss_pred             HHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhHHHhhhhhcchhhHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999  99999999999999999 8999999999999999999999999


Q ss_pred             Ccccccc---cccCCccc
Q psy71           203 GLTSMSS---YLTGKFHV  217 (218)
Q Consensus       203 Gl~~~~~---y~~~~~~~  217 (218)
                      |+.-.++   |..||||+
T Consensus       537 gv~~~~~~~~~~e~d~~~  554 (673)
T KOG2215|consen  537 GVIYLRQISHELEGDGWL  554 (673)
T ss_pred             hhhhHhhhhcccccceEE
Confidence            9977776   89999997

>PLN00153 histone H2A; Provisional

Probab=99.72  E-value=9.2e-19  Score=140.06  Aligned_cols=52  Identities=58%  Similarity=0.777  Sum_probs=49.2

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV   52 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l   52 (218)
                      |||||||+|+|++++||||||+++||+||+||++||+ +||++|||+|+++..
T Consensus        62 VLELAgnaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~vTIa~GGV~P~i~~~  114 (129)
T PLN00153         62 VLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAV  114 (129)
T ss_pred             HHHHHHHHHHhcCCCccChHHHHhhccCcHHHHHHHCCCccCCCccCCCcchh
Confidence            6899999999999999999999999999999999998 899999999997643

>PTZ00252 histone H2A; Provisional

Probab=99.71  E-value=1.2e-18  Score=139.72  Aligned_cols=52  Identities=38%  Similarity=0.580  Sum_probs=48.3

Q ss_pred             Cccccchhhhh--cCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71             1 VLELAGNASKD--LKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV   52 (218)
Q Consensus         1 vLelag~~a~~--~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l   52 (218)
                      |||||||+|++  +|++||||||+++||+||+||++||+ +|||+|||+|+++.+
T Consensus        63 VLELAgnaa~d~~~kk~RItPrHi~lAIrNDeEL~~Ll~~vTIa~GGVlP~i~~~  117 (134)
T PTZ00252         63 LLELSVKAAAQQAKKPKRLTPRTVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKA  117 (134)
T ss_pred             HHHHHHHHHHhccCCcccccHHHHHhhccChHHHHHHHcCCccCCCccCCCccHh
Confidence            68999999976  89999999999999999999999998 799999999997653

>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]

Probab=99.71  E-value=1.8e-18  Score=135.64  Aligned_cols=51  Identities=59%  Similarity=0.791  Sum_probs=48.6

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPE   51 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~   51 (218)
                      |||||||+|+|+|++||+|||+|+||+||+||+.|+. +||++|||+|+|.+
T Consensus        64 ilelAgNaA~d~kkkri~PrHlqlAIrnD~EL~~l~~~~tIa~GGvlp~I~~  115 (132)
T COG5262          64 ILELAGNAARDNKKKRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNINP  115 (132)
T ss_pred             HHHHhhhhhhhcCcceechHHHHHHhcCcHHHHHHhhhheeecCCcccccCh
Confidence            6899999999999999999999999999999999998 89999999998654

>PLN00156 histone H2AX; Provisional

Probab=99.71  E-value=1.5e-18  Score=140.25  Aligned_cols=51  Identities=55%  Similarity=0.779  Sum_probs=48.8

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPE   51 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~   51 (218)
                      |||||||+|+|++++||||||+++||+||+||++||+ +||++|||+|+++.
T Consensus        67 VLELAgNaa~d~kk~RItPrHi~lAIrnDeEL~~Ll~~vTIa~GGV~P~i~~  118 (139)
T PLN00156         67 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAAGGVLPNIHQ  118 (139)
T ss_pred             HHHHHHHHHHHcCCCcCcHHHHHhhccCcHHHHHHHCCCccCCCccCCCccH
Confidence            6899999999999999999999999999999999998 79999999999764

>KOG1756|consensus

Probab=99.71  E-value=1.7e-18  Score=137.41  Aligned_cols=53  Identities=57%  Similarity=0.774  Sum_probs=49.9

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCccc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEVR   53 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l~   53 (218)
                      |||+|||+|+|++|.||||||+++||+||+||++|++ +||++|||+|++..+.
T Consensus        65 ile~agnaardnkk~ri~PrH~~lAI~NDeEL~~lL~~vtIa~GGvlPnI~~~l  118 (131)
T KOG1756|consen   65 ILELAGNAARDNKKTRITPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAIL  118 (131)
T ss_pred             HHHHhHHHhhhcCccccChHHHHHHHhCcHHHHHHhccceeccCCcccccchhh
Confidence            6899999999999999999999999999999999997 8999999999977643

>PTZ00017 histone H2A; Provisional

Probab=99.70  E-value=2.4e-18  Score=138.52  Aligned_cols=51  Identities=63%  Similarity=0.832  Sum_probs=48.7

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPE   51 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~   51 (218)
                      |||||||+|+|++++||||||+++||+||+||++||+ +|||+|||+|+++.
T Consensus        65 ILELAgNaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~  116 (134)
T PTZ00017         65 VLELAGNAAKDNKKKRITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHK  116 (134)
T ss_pred             HHHHHHHHHHhcCCCeecHHHHHhhccCcHHHHHHHcCCcccCCccCCCccH
Confidence            6899999999999999999999999999999999996 89999999999764

>PLN00157 histone H2A; Provisional

Probab=99.70  E-value=2.5e-18  Score=138.06  Aligned_cols=52  Identities=56%  Similarity=0.772  Sum_probs=49.1

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV   52 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l   52 (218)
                      |||||||+|++++++||||||+++||+||+||++||+ +|||+|||+|+++.+
T Consensus        64 VLELAgnaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~  116 (132)
T PLN00157         64 VLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSV  116 (132)
T ss_pred             HHHHHHHHHHhcCCccccHHHHhhcccCcHHHHHHHcCceecCCccCCCcchh
Confidence            6899999999999999999999999999999999998 799999999997543

>smart00414 H2A Histone 2A

Probab=99.66  E-value=1.4e-17  Score=129.64  Aligned_cols=51  Identities=63%  Similarity=0.847  Sum_probs=48.5

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPE   51 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~   51 (218)
                      |||||||+|++++++||||||+++||+||+||++||+ +||++|||+|+++.
T Consensus        47 ILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~L~~~vti~~ggv~p~i~~   98 (106)
T smart00414       47 VLELAGNAARDNKKRRITPRHLQLAIRNDEELNKLLKGVTIAQGGVLPNIHK   98 (106)
T ss_pred             HHHHHHHHHHhcCCCccchHHHhhhccCCHHHHHHHcCcccCCCccCCCcch
Confidence            6899999999999999999999999999999999998 79999999998754

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=99.63  E-value=5.6e-17  Score=127.97  Aligned_cols=52  Identities=63%  Similarity=0.859  Sum_probs=49.2

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV   52 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l   52 (218)
                      |||||||+|++++++|||||||++||+||+||++||+ +||++|||+|+++..
T Consensus        58 IlelA~n~ak~~k~krItp~hi~lAi~nD~EL~~L~~~vtI~~ggv~p~i~~~  110 (115)
T cd00074          58 VLELAGNAARDNKKKRITPRHLQLAVRNDEELNKLLKGVTIASGGVLPNIHKV  110 (115)
T ss_pred             HHHHHHHHHHHcCCCeEcHHHHHHHHhccHHHHHHHcCCcccCCccCCCcchh
Confidence            6899999999999999999999999999999999998 799999999997653

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>KOG2215|consensus

Probab=98.12  E-value=1.5e-06  Score=85.94  Aligned_cols=120  Identities=20%  Similarity=0.258  Sum_probs=109.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhCCCC--cchhhHhHHHHHHHHHHHHHHHHHhhccCC---CCcccHHHHHHHHHHHH
Q psy71            61 YVTSASTVFFTNLSLMITELQKVAFPST--GECAAAFVVWATREFNLFVSHVIRELFVTQ---SSLSTLSPCIAAVSAKC  135 (218)
Q Consensus        61 Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~--~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~---~~l~~~aeCi~i~~~hc  135 (218)
                      |-..++.+.|.+++-+..+-. ..|++.  |+|...-+.|+.++++.|-.++..+.|...   ..++..+.|++.+..+|
T Consensus       248 ~qa~~~~~~~~~~S~A~~e~~-~~~~~e~~~s~~~~~~~W~~~~~e~~~~~v~~~~~~~s~~~~~l~~~~~~~~~~~~~~  326 (673)
T KOG2215|consen  248 RQATFPKLRFSAISWALTESL-ISFGEENLPSYSDEEVLWLEELVELFKLLVAHNAFKTSLEAIHLRAASACLQLALTIC  326 (673)
T ss_pred             cccccchHHHhcCCcccCccc-ccccCCCCcccchhhhchhhhhhHHHHHHHHhccchhhHHHHHhhhcccchhhhhhhh
Confidence            334556899999999999999 999998  899999999999999999999999997774   66777888999999999


Q ss_pred             hhhhhccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCccc
Q psy71           136 DQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKP  183 (218)
Q Consensus       136 ~~L~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~  183 (218)
                      ..|+.+||-+...+-..++  .+++++.++++........+.-++|.-
T Consensus       327 ~~Lq~~~lfl~~~ll~~~~--~~~~le~~~r~~~~~~~~l~el~~~~~  372 (673)
T KOG2215|consen  327 KPLQMRELFLLNLLLKIFS--VERALERDFRVAQRRHHQLVELGRWSR  372 (673)
T ss_pred             hhhhHhHhhhhhHHHHHhh--hhhhhhhhHHHHhhhHHHHHHhhhhcc
Confidence            9999999999999999999  999999999999999999999999984

>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 []

Probab=97.34  E-value=0.0019  Score=59.23  Aligned_cols=108  Identities=15%  Similarity=0.243  Sum_probs=81.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhhCCCC-cc----------hhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccH
Q psy71            56 GPALSYVTSASTVFFTNLSLMITELQKVAFPST-GE----------CAAAFVVWATREFNLFVSHVIRELFVTQSSLSTL  124 (218)
Q Consensus        56 G~~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~-~~----------~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~  124 (218)
                      .++..|+..+..+|=..+-+++..|. ++||++ +.          -.+.+..|+.+.+..|...+++++....  ....
T Consensus       216 ~~~~~~lkr~iei~R~~~fdiitqY~-aIF~~e~~~~~~~~~~~~~~~~~l~sw~~~~v~~~l~~L~~~L~~~~--~~~~  292 (338)
T PF04124_consen  216 SDPYRYLKRYIEIYREHLFDIITQYR-AIFPDESSTSVSLQDRPKFIPSELFSWALHRVSSFLETLEMYLPRVD--ESSR  292 (338)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHhhccc--cchH
Confidence            45789999999999999999999999 999932 11          2367889999999999999999987762  1222


Q ss_pred             HHHHHHHHHHHhhhhhccCCcHHHHhhhccccHHHHHHHHHH
Q psy71           125 SPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRD  166 (218)
Q Consensus       125 aeCi~i~~~hc~~L~evGLDl~flL~~lLr~~ie~al~~~~~  166 (218)
                      +..+.-+.--|..|.-+|.||+.++...|...+.+....+..
T Consensus       293 ~sll~q~~y~~~S~~r~g~DF~~ll~~~~~~~~~~~f~~~~~  334 (338)
T PF04124_consen  293 ESLLTQLMYFASSFGRVGADFRPLLAPLFERAVLNLFETSVS  334 (338)
T ss_pred             HHHHHHHHHHHHhcCccCCChHHHhHHHHHHHHHHHHHHHHH
Confidence            223333333445689999999999998887777666555443

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=97.05  E-value=0.00014  Score=52.19  Aligned_cols=29  Identities=55%  Similarity=0.756  Sum_probs=27.1

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCC
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGD   29 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd   29 (218)
                      |+|+|++.|..+|+++|+|+|+++|+++|
T Consensus        47 il~~A~~~a~~~kR~tI~~~DI~~A~r~~   75 (75)
T PF00125_consen   47 ILEEAGNLARHAKRKTITPRDIQLAVRID   75 (75)
T ss_dssp             HHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred             hhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence            47899999999999999999999999976

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>KOG2069|consensus

Probab=84.26  E-value=7  Score=38.79  Aligned_cols=97  Identities=21%  Similarity=0.274  Sum_probs=69.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhhCCCC-----cch-------hhHhHHHHHHHHHHHHHHHHHhhccCCCCc-c
Q psy71            56 GPALSYVTSASTVFFTNLSLMITELQKVAFPST-----GEC-------AAAFVVWATREFNLFVSHVIRELFVTQSSL-S  122 (218)
Q Consensus        56 G~~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~-----~~~-------~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l-~  122 (218)
                      .++..|+.+...++=..+-++...|+ ++||++     +++       .|.|..|....+..|..++.+-+.-.-..+ .
T Consensus       240 ~~~~~~l~~~i~~~r~~lf~~i~qY~-aifpe~~~~~n~~~~~~~~~~~~~~~~w~~~~~ss~l~~i~~~~~~~~~~l~~  318 (581)
T KOG2069|consen  240 NNPYLYLKKTIEIIRVNLFDIITQYL-AVFPEDEGDLNPNGDVRYKNITDLLISWVLSKISSFLQLIEMMLKKGIESLEH  318 (581)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccCCCCcccCCCccCchhhhhhhHHHhhccHHHHHHHHHHhhhchHHH
Confidence            45678999999999999999999999 999983     222       246779999999999999997765442222 2


Q ss_pred             cHHHHHHHHHHHHhhhhhccCCcHHHHhhhccccH
Q psy71           123 TLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPL  157 (218)
Q Consensus       123 ~~aeCi~i~~~hc~~L~evGLDl~flL~~lLr~~i  157 (218)
                      ++-.||--+    ..+.-+|+||+-++-..|...+
T Consensus       319 vl~~cmyf~----~SF~rvg~Dfr~~lap~f~~~v  349 (581)
T KOG2069|consen  319 VLGQLMYFA----LSFGRVGLDFRGLLAPLLECVV  349 (581)
T ss_pred             HHHHHHHHH----HhhccccchhcccccHHHHHHH
Confidence            344444322    2367799999987766554433

>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

Probab=81.11  E-value=0.62  Score=36.37  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             cccchhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71             3 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK   37 (218)
Q Consensus         3 elag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~   37 (218)
                      .++++.||..+.+|||-+|+..|+.+||..+=|=.
T Consensus        63 ~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL~~   97 (113)
T COG5247          63 GLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKN   97 (113)
T ss_pred             HHHHHHHHhccchhhHHHHHHHHHhhhHHHHHHHH
Confidence            35688999999999999999999999999875543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
1f66_C	128	2.6 A Crystal Structure Of A Nucleosome Core Partic		3e-19
2jss_A	192	Nmr Structure Of Chaperone Chz1 Complexed With Hist		4e-17
1eqz_A	129	X-Ray Structure Of The Nucleosome Core Particle At		1e-09
2hio_A	128	Histone Octamer (Chicken), Chromosomal Protein Leng		1e-09
2nqb_C	123	Drosophila Nucleosome Structure Length = 123		2e-09
2pyo_C	120	Drosophila Nucleosome Core Length = 120		2e-09
2cv5_C	130	Crystal Structure Of Human Nucleosome Core Particle		2e-09
3a6n_C	133	The Nucleosome Containing A Testis-Specific Histone		2e-09
2xql_A	91	Fitting Of The H2a-H2b Histones In The Electron Mic		2e-09
1hio_A	95	Histone Octamer (Chicken), Chromosomal Protein, Alp		2e-09
3c1b_C	129	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		2e-09
2f8n_K	149	2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nuc		2e-09
1zbb_C	129	Structure Of The 4_601_167 Tetranucleosome Length =		3e-09
3kwq_C	107	Structural Characterization Of H3k56q Nucleosomes A		3e-09
1m18_C	129	Ligand Binding Alters The Structure And Dynamics Of		3e-09
1aoi_C	116	Complex Between Nucleosome Core Particle (H3,H4,H2a		3e-09
1s32_C	119	Molecular Recognition Of The Nucleosomal 'supergroo		3e-09
1kx3_C	128	X-Ray Structure Of The Nucleosome Core Particle, Nc		4e-09
1id3_C	131	Crystal Structure Of The Yeast Nucleosome Core Part		4e-09
1zla_C	129	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		3e-08
1u35_C	120	Crystal Structure Of The Nucleosome Core Particle C		3e-07

>pdb|1F66|C Chain C, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 128

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG   G+ P + +
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116

>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone H2a.Z-H2b Length = 192

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 46/52 (88%), Gaps = 3/52 (5%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEV 52
           VLELAGNA+KDLKVKRITPRHLQLAIRGD+ELDSLI+ATIA G   G+ P +
Sbjct: 144 VLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIASG---GVLPHI 192

>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A Resolution Length = 129

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA G   G+ P ++
Sbjct: 63  ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG---GVLPNIQ 113

>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein Length = 128

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA G   G+ P ++
Sbjct: 62  ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG---GVLPNIQ 112

>pdb|2NQB|C Chain C, Drosophila Nucleosome Structure Length = 123

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAGGARFGLYPEVR 53
           VLELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA G   G+ P ++
Sbjct: 61  VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQG---GVLPNIQ 111

>pdb|2PYO|C Chain C, Drosophila Nucleosome Core Length = 120

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAGGARFGLYPEVR 53
           VLELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA G   G+ P ++
Sbjct: 61  VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQG---GVLPNIQ 111

>pdb|2CV5|C Chain C, Crystal Structure Of Human Nucleosome Core Particle Length = 130

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA G   G+ P ++
Sbjct: 63  ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQG---GVLPNIQ 113

>pdb|3A6N|C Chain C, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 133

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA G   G+ P ++
Sbjct: 66  ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQG---GVLPNIQ 116

>pdb|2XQL|A Chain A, Fitting Of The H2a-H2b Histones In The Electron Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5). Length = 91

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 43
          +LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 48 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 91

>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 95

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGA 44
          +LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA G 
Sbjct: 48 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGG 92

>pdb|3C1B|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 129

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ + TIA G   G+ P ++
Sbjct: 62  ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112

>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nucleosomes Length = 149

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA G   G+ P ++
Sbjct: 82  ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQG---GVLPNIQ 132

>pdb|1ZBB|C Chain C, Structure Of The 4_601_167 Tetranucleosome Length = 129

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ + TIA G   G+ P ++
Sbjct: 62  ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112

>pdb|3KWQ|C Chain C, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 107

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
          +LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ + TIA G   G+ P ++
Sbjct: 49 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 99

>pdb|1M18|C Chain C, Ligand Binding Alters The Structure And Dynamics Of Nucleosomal Dna Length = 129

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ + TIA G   G+ P ++
Sbjct: 62  ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112

>pdb|1AOI|C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 116

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ + TIA G   G+ P ++
Sbjct: 59  ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 109

>pdb|1S32|C Chain C, Molecular Recognition Of The Nucleosomal 'supergroove' Length = 119

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ + TIA G   G+ P ++
Sbjct: 62  ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112

>pdb|1KX3|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 128

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ + TIA G   G+ P ++
Sbjct: 62  ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112

>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 131

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 4/56 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVRRD 55
           +LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA G   G+ P + ++
Sbjct: 63  ILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQG---GVLPNIHQN 115

>pdb|1ZLA|C Chain C, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 129

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
           +LELAGN  +D K  RI PRHLQLA+R DEEL+ L+ + TIA G   G+ P ++
Sbjct: 62  ILELAGNWERDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112

>pdb|1U35|C Chain C, Crystal Structure Of The Nucleosome Core Particle Containing The Histone Domain Of Macroh2a Length = 120

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIA-GGARFGLYPEV 52
           +LELA NA++D K  R+TPRH+ LA+  DEEL+ L+K  TIA GG    ++PE+
Sbjct: 60  ILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPEL 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
2d2s_A	235	Exocyst complex component EXO84; tethering complex	2e-17
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	1e-10
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	2e-10
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	2e-09
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	6e-09
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	2e-08
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	5e-08
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	2e-07

>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2 Length = 235

 Score = 77.0 bits (189), Expect = 2e-17
 Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 51  EVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHV 110
           ++       +Y+T  + + F  +   + + Q +      + ++  V W + E +     +
Sbjct: 128 QIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHFKLI 187

Query: 111 IRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTK 159
            ++L    +        I +   + D L ++GLD  Y LD  ++    K
Sbjct: 188 DKQLL---NDEMLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDK 233

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 Length = 149

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 29/44 (65%), Positives = 34/44 (77%), Gaps = 1/44 (2%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 43
           +LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA G
Sbjct: 82  ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQG 125

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Length = 192

 Score = 57.1 bits (136), Expect = 2e-10
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 43
           VLELAGNA+KDLKVKRITPRHLQLAIRGD+ELDSLI+ATIA G
Sbjct: 144 VLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIASG 186

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... Length = 129

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 29/44 (65%), Positives = 34/44 (77%), Gaps = 1/44 (2%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 43
           +LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA G
Sbjct: 63  ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 Length = 128

 Score = 51.5 bits (122), Expect = 6e-09
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 43
           VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG
Sbjct: 66  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 108

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Length = 120

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAGG 43
           +LELA NA++D K  R+TPRH+ LA+  DEEL+ L+K  TIA G
Sbjct: 60  ILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASG 103

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Length = 131

 Score = 49.2 bits (116), Expect = 5e-08
 Identities = 28/45 (62%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGA 44
           +LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA G 
Sbjct: 63  ILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGG 107

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* Length = 123

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 30/45 (66%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAGGA 44
           VLELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA G 
Sbjct: 61  VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGG 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
2d2s_A	235	Exocyst complex component EXO84; tethering complex	99.98
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	99.63
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	99.61
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	99.59
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	99.59
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	99.58
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	99.55
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	98.42
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	97.86
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	97.45
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	97.14
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	95.11
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	93.12
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	92.98
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	88.17
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	87.2
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	80.07

>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2

Probab=99.98  E-value=1.8e-33  Score=243.96  Aligned_cols=121  Identities=19%  Similarity=0.314  Sum_probs=108.3

Q ss_pred             HhHHHHHHhcCCcccCC-CCcccccCcchhhHHHHHHHHHHHHHHHHHHHHHhhCCC-CcchhhHhHHHHHHHHHHHHHH
Q psy71            32 LDSLIKATIAGGARFGL-YPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPS-TGECAAAFVVWATREFNLFVSH  109 (218)
Q Consensus        32 L~~Ll~~tia~~gv~~~-~r~l~~eG~~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~-~~~~~S~~V~Wa~~eve~F~~l  109 (218)
                      ..-+|+   +++.++.+ +|++.++||++.||++||++||+.|++|+++|+ ++||+ +|.|+|+||+||++|++.|+.+
T Consensus       111 ~~lfL~---~rs~~i~~~~r~l~~~gd~~~Yi~~Ls~i~Fs~I~~t~~~f~-~~F~~~~~~~~S~lV~Wa~~eve~f~~l  186 (235)
T 2d2s_A          111 LDLFLQ---NRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQ-DIFKELGAKISSILVDWCSDEVDNHFKL  186 (235)
T ss_dssp             HHHHHH---HHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHH-HHSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH---HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCcccccHHHHHHHHHHHHHHHH
Confidence            345556   67777877 899999999999999999999999999999999 99999 7789999999999999999999


Q ss_pred             HHHhhccCCCCcccHHHHHHHHHHHHhhhhhccCCcHHHHhhhccccHHH
Q psy71           110 VIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTK  159 (218)
Q Consensus       110 ~~rqv~~~~~~l~~~aeCi~i~~~hc~~L~evGLDl~flL~~lLr~~ie~  159 (218)
                      |+|||++ ++++++  +||+++++||++|+++||||+|+|+++|+|++++
T Consensus       187 ~~rqv~~-~~~l~~--ecv~i~~~~~~~L~~vGLd~~~~L~~ll~~~~~~  233 (235)
T 2d2s_A          187 IDKQLLN-DEMLSP--GSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDK  233 (235)
T ss_dssp             HHHHTTC----CCH--HHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGGG
T ss_pred             HHHHccC-CccHHH--HHHHHHHHHHHHHHHcCCChHHHHHHHHhhhHhh
Confidence            9999999 566665  9999999999999999999999999999999986

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=99.63  E-value=2.5e-17  Score=131.07  Aligned_cols=52  Identities=83%  Similarity=1.056  Sum_probs=49.6

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHHHHhcCCcccCCCCcc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEV   52 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~~tia~~gv~~~~r~l   52 (218)
                      |||+|||+|++++++|||||||++||+||+||++||++|||+|||+|+++..
T Consensus        66 IlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~~tia~ggv~P~i~~~  117 (128)
T 1f66_C           66 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKS  117 (128)
T ss_dssp             HHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCCSEETTCCCCCCCCGG
T ss_pred             HHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhcceecCCccCCCCCHH
Confidence            6899999999999999999999999999999999999999999999998764

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=99.61  E-value=6.9e-17  Score=127.19  Aligned_cols=52  Identities=48%  Similarity=0.648  Sum_probs=49.2

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV   52 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l   52 (218)
                      |||+|||+|++++++|||||||++||+||+||++||+ +|||+|||+|+++..
T Consensus        60 IlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~  112 (120)
T 2f8n_G           60 ILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPE  112 (120)
T ss_dssp             HHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGG
T ss_pred             HHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHH
Confidence            5899999999999999999999999999999999997 799999999997754

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=99.59  E-value=1.4e-16  Score=125.88  Aligned_cols=52  Identities=60%  Similarity=0.795  Sum_probs=49.2

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV   52 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l   52 (218)
                      |||+|||+|++++++|||||||++||+||+||++||+ +|||+|||+|+++..
T Consensus        61 IlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~  113 (123)
T 2nqb_C           61 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAV  113 (123)
T ss_dssp             HHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGG
T ss_pred             HHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhcCceeCCCCcCCCccHH
Confidence            5899999999999999999999999999999999997 799999999997754

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=99.59  E-value=1.4e-16  Score=127.10  Aligned_cols=52  Identities=54%  Similarity=0.749  Sum_probs=49.1

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV   52 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l   52 (218)
                      |||+|||+|++++++||+||||++||+||+||+.||+ +|||+|||+|+++..
T Consensus        63 IlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~~vtIa~ggvlP~i~~~  115 (131)
T 1id3_C           63 ILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQN  115 (131)
T ss_dssp             HHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTTTEEETTCCCCCCCCGG
T ss_pred             HHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhcCceecCCccCCCccHH
Confidence            5899999999999999999999999999999999997 799999999997754

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=99.58  E-value=2.1e-16  Score=125.82  Aligned_cols=52  Identities=58%  Similarity=0.785  Sum_probs=49.1

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV   52 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l   52 (218)
                      |||+|||+|++++++|||||||++||+||+||++||+ +|||+|||+|+++..
T Consensus        63 IlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~  115 (129)
T 1tzy_A           63 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAV  115 (129)
T ss_dssp             HHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGG
T ss_pred             HHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHH
Confidence            5899999999999999999999999999999999997 799999999997754

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=99.55  E-value=4.2e-16  Score=126.70  Aligned_cols=52  Identities=58%  Similarity=0.785  Sum_probs=49.1

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV   52 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l   52 (218)
                      |||+|||+|++++++||+||||++||+||+||++||+ +|||+|||+|++...
T Consensus        82 ILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~  134 (149)
T 2f8n_K           82 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAV  134 (149)
T ss_dssp             HHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGG
T ss_pred             HHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHH
Confidence            6899999999999999999999999999999999997 799999999997654

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=98.42  E-value=2.4e-08  Score=101.63  Aligned_cols=48  Identities=21%  Similarity=0.387  Sum_probs=36.2

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHHHHhcCCcccCC
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGL   48 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~~tia~~gv~~~   48 (218)
                      |||||||+|++++++||||||+++|++||+||+.||+.....+|++|.
T Consensus       141 ~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l~~~dee~~~~lp~  188 (1049)
T 3ksy_A          141 ILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDVEDINILSL  188 (1049)
T ss_dssp             HHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHHCC-----------
T ss_pred             HHHHHHHHHHHcCCceecCccccccccCCHHHHHHHhhccccccCCCC
Confidence            689999999999999999999999999999999999866667787775

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=97.86  E-value=1.4e-06  Score=65.85  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=22.2

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK   37 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~   37 (218)
                      ++|+|++.|+++++++|+|+||.+||++|++++.|+.
T Consensus        49 l~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~d   85 (98)
T 1jfi_A           49 LLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKA   85 (98)
T ss_dssp             HHHHHHHHHHTC---CBCHHHHHTTCC----------
T ss_pred             HHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHh
Confidence            3578999999999999999999999999999999985

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=97.45  E-value=1.9e-05  Score=61.51  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=31.1

Q ss_pred             ccccchhhhhcCCcccchhhhHHHhhCChhHhHH
Q psy71             2 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSL   35 (218)
Q Consensus         2 Lelag~~a~~~~~~rItPrhl~lAi~nd~eL~~L   35 (218)
                      ++.|++.|+++|+++|+|+||..||++|++++=|
T Consensus        80 ~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL  113 (119)
T 4g92_C           80 TMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL  113 (119)
T ss_dssp             HHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred             HHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence            5778999999999999999999999999999733

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=97.14  E-value=9.2e-05  Score=55.53  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=32.7

Q ss_pred             ccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71             2 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK   37 (218)
Q Consensus         2 Lelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~   37 (218)
                      ++.|++.|+++|+++|+|+||..||++|++++-|..
T Consensus        58 ~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d   93 (97)
T 1n1j_B           58 TLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID   93 (97)
T ss_dssp             HHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred             HHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence            467889999999999999999999999999988764

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=95.11  E-value=0.0044  Score=49.48  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=31.5

Q ss_pred             ccccchhh-hhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71             2 LELAGNAS-KDLKVKRITPRHLQLAIRGDEELDSLIK   37 (218)
Q Consensus         2 Lelag~~a-~~~~~~rItPrhl~lAi~nd~eL~~Ll~   37 (218)
                      ++.|++.| +..|+++|+|+||..||++++.++-|..
T Consensus        58 t~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~d   94 (140)
T 2byk_A           58 AGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQ   94 (140)
T ss_dssp             HHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTT
T ss_pred             HHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhc
Confidence            34578888 8999999999999999999999987773

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=93.12  E-value=0.015  Score=43.71  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=26.1

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCC
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGD   29 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd   29 (218)
                      |++.|.+.|++.++++|||+||.+|+++.
T Consensus        66 V~~dA~~~a~hakRktIt~~DV~~Alr~~   94 (103)
T 1tzy_D           66 VIRDAVTYTEHAKRKTVTAMDVVYALKRQ   94 (103)
T ss_dssp             HHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence            46778999999999999999999999875

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=92.98  E-value=0.017  Score=43.56  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=26.0

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCC
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGD   29 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd   29 (218)
                      |++.|.+.|++.++++|||+||.+|+++.
T Consensus        66 V~~dA~~~a~hakRktvt~~DV~~Alr~~   94 (103)
T 2yfw_B           66 VIRDAVTYTEHAKRKTVTSLDVVYALKRQ   94 (103)
T ss_dssp             HHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            46778899999999999999999999864

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=88.17  E-value=0.1  Score=36.17  Aligned_cols=27  Identities=19%  Similarity=0.230  Sum_probs=22.8

Q ss_pred             ccccchhhhhcCCcccchhhhHHHhhC
Q psy71             2 LELAGNASKDLKVKRITPRHLQLAIRG   28 (218)
Q Consensus         2 Lelag~~a~~~~~~rItPrhl~lAi~n   28 (218)
                      ++-|...|++.||+.|+|++|.+|+++
T Consensus        44 ~~dA~~~a~hakRkTI~~~DV~lA~~~   70 (70)
T 1ku5_A           44 AKKAVEFARHAGRKTVKVEDIKLAIKS   70 (70)
T ss_dssp             HHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence            345667788899999999999999985

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=87.20  E-value=0.13  Score=35.34  Aligned_cols=25  Identities=24%  Similarity=0.165  Sum_probs=21.0

Q ss_pred             ccchhhhhcCCcccchhhhHHHhhC
Q psy71             4 LAGNASKDLKVKRITPRHLQLAIRG   28 (218)
Q Consensus         4 lag~~a~~~~~~rItPrhl~lAi~n   28 (218)
                      -|...|...||+.|+|+||++|++.
T Consensus        42 ~A~~~a~~~kRkTI~~~Di~~A~~~   66 (68)
T 1b67_A           42 EAVKLAKHAGRKTIKAEDIELARKM   66 (68)
T ss_dssp             HHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred             HHHHHHHHcCCCccCHHHHHHHHHh
Confidence            3556678899999999999999864

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=80.07  E-value=1.6  Score=35.06  Aligned_cols=71  Identities=15%  Similarity=0.031  Sum_probs=42.4

Q ss_pred             ccchhhhhcCCcccchhhhHHHhhC--ChhHhHHHHHHhcCCc-ccCC--CCc-------ccccCcchhhHHHHHHHHHH
Q psy71             4 LAGNASKDLKVKRITPRHLQLAIRG--DEELDSLIKATIAGGA-RFGL--YPE-------VRRDGPALSYVTSASTVFFT   71 (218)
Q Consensus         4 lag~~a~~~~~~rItPrhl~lAi~n--d~eL~~Ll~~tia~~g-v~~~--~r~-------l~~eG~~~~Yi~~Ls~v~Ft   71 (218)
                      -|.+.|++.|||.|+|+||.+|+..  +++       .+.+.| -+|.  ++.       -+..++..-++.+.-..|..
T Consensus        45 ~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~-------v~d~~~l~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~  117 (154)
T 1f1e_A           45 AAKSVLDASGKKTLMEEHLKALADVLMVEG-------VEDYDGELFGRATVRRILKRAGIERASSDAVDLYNKLICRATE  117 (154)
T ss_dssp             HHHHHHHTTTCSEECHHHHHHHHHHHTCTT-------STTCCSCCCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcCCHHHHHHHHHhccccc-------CCccccccCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHH
Confidence            3567788999999999999999822  222       111111 1222  222       24555666666666666666


Q ss_pred             HHHHHHHHHH
Q psy71            72 NLSLMITELQ   81 (218)
Q Consensus        72 ~I~~t~~ef~   81 (218)
                      .|..-+.++.
T Consensus       118 ~I~~~A~~~a  127 (154)
T 1f1e_A          118 ELGEKAAEYA  127 (154)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d2d2sa1	229	a.118.17.2 (A:525-753) Exocyst complex component E	5e-16
d1tzya_	106	a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus)	1e-13
d1u35c1	106	a.22.1.1 (C:814-919) macro-H2A.1, histone domain {	6e-13
d1q9ca_	172	a.22.1.3 (A:) Histone domain of Son of sevenless p	2e-12
d1f66c_	103	a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), v	8e-12
d1n1jb_	78	a.22.1.3 (B:) Nuclear transcription factor Y subun	9e-06
d1jfia_	66	a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chai	1e-04

>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (176), Expect = 5e-16
 Identities = 17/104 (16%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 51  EVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHV 110
           ++       +Y+T  + + F  +   + + Q +      + ++  V W + E +     +
Sbjct: 122 QIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHFKLI 181

Query: 111 IRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALR 154
            ++L    +        I +   + D L ++GLD  Y LD  ++
Sbjct: 182 DKQLL---NDEMLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIK 222

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 106

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score = 62.1 bits (151), Expect = 1e-13
 Identities = 30/44 (68%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEEL-DSLIKATIAGG 43
          +LELAGNA++D K  RI PRHLQLAIR DEEL   L K TIA G
Sbjct: 50 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 93

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 6e-13
 Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 43
          +LELA NA++D K  R+TPRH+ LA+  DEEL+ L+K  TIA G
Sbjct: 49 ILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASG 92

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 10/36 (27%), Positives = 23/36 (63%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 36
           +L+LAGN  ++++   IT + +++A+  D+ L  + 
Sbjct: 136 ILKLAGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 171

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} Length = 103

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 8e-12
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 43
          VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG
Sbjct: 50 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 92

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 9e-06
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 36
          +   A   ++D K + +    + +AI   ++ D LI
Sbjct: 38 LTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 73

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAI 26
          +L+ A   ++    K +T  HL+  I
Sbjct: 40 LLKKACQVTQSRNAKTMTTSHLKQCI 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d2d2sa1	229	Exocyst complex component EXO84 {Baker's yeast (Sa	99.95
d1tzya_	106	Histone H2A {Chicken (Gallus gallus), erythrocytes	99.75
d1u35c1	106	macro-H2A.1, histone domain {Human (Homo sapiens)	99.71
d1f66c_	103	Histone H2A {Human (Homo sapiens), variant H2A.Z [	99.69
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	95.5
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	93.53
d1k6ka_	142	N-terminal, ClpS-binding domain of ClpA, an Hsp100	82.94
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	82.14
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	80.33

>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.4e-29  Score=211.82  Aligned_cols=115  Identities=17%  Similarity=0.254  Sum_probs=103.1

Q ss_pred             cCCcccCC-CCcccccCcchhhHHHHHHHHHHHHHHHHHHHHHhhCCCC-cchhhHhHHHHHHHHHHHHHHHHHhhccCC
Q psy71            41 AGGARFGL-YPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPST-GECAAAFVVWATREFNLFVSHVIRELFVTQ  118 (218)
Q Consensus        41 a~~gv~~~-~r~l~~eG~~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~-~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~  118 (218)
                      +++..+.+ +++++.+||+..||++|+.+||+.|++|+.+|+ ++||++ |.|+|.||.||++|++.|+.+|+||++++ 
T Consensus       111 ~rs~~l~~~i~~~~~~~~~~~Yi~~l~~i~f~~i~~t~~~y~-aiF~~~~~~~sS~lv~Wa~~ei~~f~~~l~r~l~~~-  188 (229)
T d2d2sa1         111 NRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQ-DIFKELGAKISSILVDWCSDEVDNHFKLIDKQLLND-  188 (229)
T ss_dssp             HHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHH-HHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCchhhhHHHHHHHHHHHHHHHHHHHHcccc-
Confidence            66777776 899999999999999999999999999999999 999764 66789999999999999999999999976 


Q ss_pred             CCcccHHHHHHHHHHHHhhhhhccCCcHHHHhhhccccHHH
Q psy71           119 SSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTK  159 (218)
Q Consensus       119 ~~l~~~aeCi~i~~~hc~~L~evGLDl~flL~~lLr~~ie~  159 (218)
                        .+++++||+++++||++|+++||||+|+|+++|++++++
T Consensus       189 --~~~~~~~i~~~~~~c~~L~~vGlDf~~lL~~ll~~~~~~  227 (229)
T d2d2sa1         189 --EMLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDK  227 (229)
T ss_dssp             ----CCHHHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGGG
T ss_pred             --hhHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHhhHHh
Confidence              567899999999999999999999999999999999875

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=99.75  E-value=5.6e-20  Score=139.97  Aligned_cols=51  Identities=57%  Similarity=0.778  Sum_probs=48.8

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPE   51 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~   51 (218)
                      |||||||+|+++|++||||||+++||+||+||++||+ +||++|||+|+++.
T Consensus        50 iLELAgn~a~~~k~~rItPrhi~lAirnDeeL~~L~~~vtI~~GGv~P~Ih~  101 (106)
T d1tzya_          50 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQA  101 (106)
T ss_dssp             HHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCG
T ss_pred             HHHHhhHHHHhcCCceecchhhhhcccCHHHHHHHHcCCeecCCCccCccCH
Confidence            6899999999999999999999999999999999996 89999999999765

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.4e-19  Score=135.61  Aligned_cols=51  Identities=49%  Similarity=0.673  Sum_probs=48.8

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPE   51 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~   51 (218)
                      |||||||+|+++|++||||||+++||+||+||++||+ +||++|||+|+++.
T Consensus        49 ILELAgn~a~~~k~~rItprhi~lairnD~EL~~L~~~vtI~~GGv~p~Ih~  100 (106)
T d1u35c1          49 ILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHP  100 (106)
T ss_dssp             HHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCG
T ss_pred             HHHHHHHHHHHcCCCeeecchhhhcccCHHHHHHHHcCCeEeCCcccCCcCH
Confidence            6899999999999999999999999999999999997 79999999999765

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

Probab=99.69  E-value=8.7e-19  Score=132.85  Aligned_cols=51  Identities=84%  Similarity=1.083  Sum_probs=49.1

Q ss_pred             CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHHHHhcCCcccCCCCc
Q psy71             1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPE   51 (218)
Q Consensus         1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~~tia~~gv~~~~r~   51 (218)
                      |||||||+|+++|++||||||+++||+||+||++||++||++|||+|+++.
T Consensus        50 ILelagn~a~~~~~~rItpr~l~lai~nD~EL~~L~~vti~~GGv~p~I~~  100 (103)
T d1f66c_          50 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHK  100 (103)
T ss_dssp             HHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCCSEETTCCCCCCCCG
T ss_pred             HHHHhhhhhccCCCCeeechhhhccccCcHHHHHHhCeEeeCCeecccccH
Confidence            589999999999999999999999999999999999999999999999775

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0012  Score=45.43  Aligned_cols=32  Identities=19%  Similarity=0.156  Sum_probs=28.2

Q ss_pred             cccchhhhhcCCcccchhhhHHHhhCChhHhH
Q psy71             3 ELAGNASKDLKVKRITPRHLQLAIRGDEELDS   34 (218)
Q Consensus         3 elag~~a~~~~~~rItPrhl~lAi~nd~eL~~   34 (218)
                      +-|++.|+..|+++|+|+||..||+++++++=
T Consensus        40 ~~A~~~a~~~~rkti~~~dl~~av~~~~~~~F   71 (78)
T d1n1jb_          40 LRAWIHTEDNKRRTLQRNDIAMAITKFDQFDF   71 (78)
T ss_dssp             HHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred             HHHHHHHHHcCCCcCCHHHHHHHHhcCChhHH
Confidence            45778899999999999999999999998743

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.004  Score=41.49  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=20.2

Q ss_pred             ccccchhhhhcCCcccchhhhHHHhh
Q psy71             2 LELAGNASKDLKVKRITPRHLQLAIR   27 (218)
Q Consensus         2 Lelag~~a~~~~~~rItPrhl~lAi~   27 (218)
                      ++.|++.|+.+|+++|+|+||..||+
T Consensus        41 ~~~A~~~a~~~krktI~~~dl~~ai~   66 (66)
T d1jfia_          41 LKKACQVTQSRNAKTMTTSHLKQCIE   66 (66)
T ss_dssp             HHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred             HHHHHHHHHHhCCCcCCHHHHHHHhC
Confidence            46788999999999999999999874

>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Double Clp-N motif
superfamily: Double Clp-N motif
family: Double Clp-N motif
domain: N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone
species: Escherichia coli [TaxId: 562]

Probab=82.94  E-value=0.18  Score=36.50  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             ccccchhhhhcCCcccchhhhHHHhhCChhHhHHH
Q psy71             2 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI   36 (218)
Q Consensus         2 Lelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll   36 (218)
                      |.-|-+.|+..+-..|+|+||.+|+-+|++-..++
T Consensus        10 l~~A~~~A~~~~h~~i~~EHLL~aLl~~~~~~~~l   44 (142)
T d1k6ka_          10 LNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL   44 (142)
T ss_dssp             HHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHhchhHHHHH
Confidence            45577889999999999999999999998865554

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=82.14  E-value=0.63  Score=35.07  Aligned_cols=71  Identities=17%  Similarity=0.070  Sum_probs=44.5

Q ss_pred             cchhhhhcCCcccchhhhHHHhhC--ChhH----hHHHH-H---HhcC-CcccCCCCcccccCcchhhHHHHHHHHHHHH
Q psy71             5 AGNASKDLKVKRITPRHLQLAIRG--DEEL----DSLIK-A---TIAG-GARFGLYPEVRRDGPALSYVTSASTVFFTNL   73 (218)
Q Consensus         5 ag~~a~~~~~~rItPrhl~lAi~n--d~eL----~~Ll~-~---tia~-~gv~~~~r~l~~eG~~~~Yi~~Ls~v~Ft~I   73 (218)
                      |.+.|+..+|+.|+|+||+.|++-  .+++    +.+|. .   .|++ .|+      -++..+...|+.+....|...|
T Consensus        43 A~~l~~~~~rKTi~~edi~~a~~~~~~~~~~~~~~~~fp~a~IkRi~k~~g~------~ris~dA~~~l~~~~E~fi~~l  116 (151)
T d1f1ea_          43 AKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELFGRATVRRILKRAGI------ERASSDAVDLYNKLICRATEEL  116 (151)
T ss_dssp             HHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCCSCCCCHHHHHHHHHHTTC------CEECHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcCCHHHHHHHHHhcccccccccccCccCHHHHHHHHHcCCc------chhhHHHHHHHHHHHHHHHHHH
Confidence            566788899999999999999763  1111    11121 0   1111 111      2466677777777777777777


Q ss_pred             HHHHHHHH
Q psy71            74 SLMITELQ   81 (218)
Q Consensus        74 ~~t~~ef~   81 (218)
                      .+-+..|.
T Consensus       117 ~~~A~~~a  124 (151)
T d1f1ea_         117 GEKAAEYA  124 (151)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776665

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=80.33  E-value=0.18  Score=32.97  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.3

Q ss_pred             cchhhhhcCCcccchhhhHHHhh
Q psy71             5 AGNASKDLKVKRITPRHLQLAIR   27 (218)
Q Consensus         5 ag~~a~~~~~~rItPrhl~lAi~   27 (218)
                      |...|+..||+.|+|+||..|++
T Consensus        44 a~~~a~~~kRkTi~~~DV~~Alk   66 (68)
T d1htaa_          44 AVKLAKHAGRKTIKAEDIELARK   66 (68)
T ss_dssp             HHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCcCCHHHHHHHHH
Confidence            55678889999999999999986