Psyllid ID: psy723

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
MSSVSDKSQTEINSPPGSPADQNEPLGNATALVPTLDSHPLLPIEQYRIQLYNYAIQAERLRLSQQYGTPYTNYQTPNVNRVMNYFHPRFQISSEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRSANGKGHYWSIHPANVDDFKKGDFRRRKAQRKVRRHMGLSVDDDNDSNSPPPLSPPLTFPNILFSSHPFQCFPQMLPPLGSTNTTSPCISRKRQFDVDSLLAPDHPASDLENTGKRQFDVDSLLAPDHPASDLENTDARKKLKPTSSPQTKVKHAASITDEVFERLQPGEEDRNKSDEEIDAENEADIDVVNNNNDSESEKVQESLILQRYYQTIALRRFQMYQQQLHQNPSEH
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHcccccHHccHccccccccEEEEcccccccccEEEEccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
mssvsdksqteinsppgspadqneplgnatalvptldshpllpieQYRIQLYNYAIQAERLRLSqqygtpytnyqtpnvnrvmnyfhprfqisseepkpqhsyIGLIAMAILSSPEMKLVLSDIYQYILDNYsyfrtrgpgwrnsirhnlslndcfikagrsangkghywsihpanvddfkkgdfRRRKAQRKVRRhmglsvdddndsnsppplsppltfpnilfsshpfqcfpqmlpplgstnttspcisrkrqfdvdsllapdhpasdlentgkrqfdvdsllapdhpasdlentdarkklkptsspqtkvkhAASITDEVferlqpgeedrnksdeeidaeneadidvvnnnndsesEKVQESLILQRYYQTIALRRFQMYQQQlhqnpseh
mssvsdksqteinsppgspadqnePLGNATALVPTLDSHPLLPIEQYRIQLYNYAIQAERLRLSQQYGTPYTNYQTPNVNRVMNYFHPRFQISSEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRSANGKGHYWSIHpanvddfkkgdfRRRKAQrkvrrhmglsvdddndsnsPPPLSPPLTFPNILFSSHPFQCFPQMLPPLGSTNTTSPCISRKRQFDVDSLLAPDHPASDLENTGKRQFDVDSLLAPDhpasdlentdarkklkptsspqtkvkhaasitdevferlqpgeedrnksdeeidaeneadidvvnnnndsesekVQESLILQRYYQTIALRRFQMYQQQLHQNPSEH
MSSVSDKSQTEINSPPGSPADQNEPLGNATALVPTLDSHPLLPIEQYRIQLYNYAIQAERLRLSQQYGTPYTNYQTPNVNRVMNYFHPRFQISSEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRSANGKGHYWSIHPANVDDFKKGDFrrrkaqrkvrrHMGlsvdddndsnsppplspplTFPNILFSSHPFQCFPQMLPPLGSTNTTSPCISRKRQFDVDSLLAPDHPASDLENTGKRQFDVDSLLAPDHPASDLENTDARKKLKPTSSPQTKVKHAASITDEVFERLQPGEEDRNKSdeeidaeneadidVVNNNNDSESEKVQESLILQRYYQTIALRRFQMYQQQLHQNPSEH
******************************ALVPTLDSHPLLPIEQYRIQLYNYAIQAERLRLSQQYGTPYTNYQTPNVNRVMNYFHPRFQI********HSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRSANGKGHYWSIHPANVDDF**************************************TFPNILFSSHPFQCFPQML********************************************************************************************************************************SLILQRYYQTIALRRFQMY***********
******************************************************************************************************YIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRSANGKGHYWSIHPANVDDFKKGDF***************************************************************************************************************************************************************************************LQRYYQTIALRRFQM************
*********************QNEPLGNATALVPTLDSHPLLPIEQYRIQLYNYAIQAERLRLSQQYGTPYTNYQTPNVNRVMNYFHPRFQISSEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRSANGKGHYWSIHPANVDDFKKGDFR**********HMGLSV**********PLSPPLTFPNILFSSHPFQCFPQMLPPLGSTNTTSPCISRKRQFDVDSLLAPDHPASDLENTGKRQFDVDSLLAPDHPASDL**********************ASITDEVFERLQP************DAENEADIDVVNNNNDSESEKVQESLILQRYYQTIALRRFQMYQ**********
**************************GN*TA*VPTLDSHPLLPIEQYRIQLYNYAIQAERLRL**Q**T**********************ISSEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRSANGKGHYWSIHPANVDDFKKGDFRRRKAQRKV**********************************************************************************RQFDVDSLLAPDHPASDLENTDARKKLKPTSSPQT*****************************IDAENEADIDVVNNNNDSESEKVQESLILQRYYQTIALRRFQMYQQQLH******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSSVSDKSQTEINSPPGSPADQNEPLGNATALVPTLDSHPLLPIEQYRIQLYNYAIQAERLRLSQQYGTPYTNYQTPNVNRVMNYFHPRFQISSEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRSANGKGHYWSIHPANVDDFKKGDFRRRKAQRKVRRHMGLSVDDDNDSNSPPPLSPPLTFPNILFSSHPFQCFPQMLPPLGSTNTTSPCISRKRQFDVDSLLAPDHPASDLENTGKRQFDVDSLLAPDHPASDLENTDARKKLKPTSSPQTKVKHAASITDEVFERLQPGEEDRNKSDEEIDAENEADIDVVNNNNDSESEKVQESLILQRYYQTIALRRFQMYQQQLHQNPSEH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query395 2.2.26 [Sep-21-2011]
P32029271 Fork head domain-containi no N/A 0.453 0.660 0.350 6e-25
P32315427 Forkhead box protein A1-B N/A N/A 0.536 0.496 0.353 8e-25
Q12950439 Forkhead box protein D4 O yes N/A 0.273 0.246 0.5 3e-24
P32028372 Fork head domain-containi no N/A 0.263 0.279 0.509 5e-24
Q6LD29429 Forkhead box protein A1-A N/A N/A 0.356 0.328 0.406 6e-24
Q64732325 Forkhead box protein B1 O yes N/A 0.281 0.341 0.477 7e-24
Q99853325 Forkhead box protein B1 O no N/A 0.281 0.341 0.477 7e-24
Q12952345 Forkhead box protein L1 O no N/A 0.243 0.278 0.510 9e-24
Q64731336 Forkhead box protein L1 O no N/A 0.243 0.285 0.5 2e-23
Q8AWH1428 Forkhead box protein A1 O no N/A 0.356 0.329 0.406 2e-23
>sp|P32029|FD5_DROME Fork head domain-containing protein FD5 OS=Drosophila melanogaster GN=fd96Cb PE=2 SV=2 Back     alignment and function desciption
 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 109/197 (55%), Gaps = 18/197 (9%)

Query: 90  FQISSEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHN 149
            ++S  + KP +SYI L AMAI+ SP+  L LS+IY++I+D + ++R     W+NS+RHN
Sbjct: 5   LKMSYGDQKPPYSYISLTAMAIIHSPQRLLPLSEIYRFIMDQFPFYRKNTQKWQNSLRHN 64

Query: 150 LSLNDCFIKAGRSAN--GKGHYWSIHPANVDDFKKGDFRRRKAQRKVRR--------HMG 199
           LS NDCFIK  R+    GKG YW++HP   D F+ G   RR+ + +V++         + 
Sbjct: 65  LSFNDCFIKVPRNVTKAGKGSYWTLHPMAFDMFENGSLLRRRKRFRVKQLEKDISNWKLA 124

Query: 200 LSVDDD------NDSNSPPPLSPPLTFPNILFSSHPFQCFP-QMLPPLGSTNTTSPCISR 252
            + + +      +D  +    + P    ++L ++   Q  P +  PP+  T  T      
Sbjct: 125 AAANTEMVTHYLDDQLTQMAFADPARHGHVLANASAAQMSPYKATPPILPTTVTQLPARP 184

Query: 253 KRQFDVDSLLAPDHPAS 269
           KR F ++SL+APD PAS
Sbjct: 185 KRAFTIESLMAPD-PAS 200
Involved in development during embryogenesis.
Drosophila melanogaster (taxid: 7227)
>sp|P32315|FXA1B_XENLA Forkhead box protein A1-B OS=Xenopus laevis GN=foxa1-b PE=2 SV=1 Back     alignment and function description
>sp|Q12950|FOXD4_HUMAN Forkhead box protein D4 OS=Homo sapiens GN=FOXD4 PE=2 SV=4 Back     alignment and function description
>sp|P32028|FD4_DROME Fork head domain-containing protein FD4 OS=Drosophila melanogaster GN=fd96Ca PE=2 SV=2 Back     alignment and function description
>sp|Q6LD29|FXA1A_XENLA Forkhead box protein A1-A OS=Xenopus laevis GN=foxa1-a PE=2 SV=2 Back     alignment and function description
>sp|Q64732|FOXB1_MOUSE Forkhead box protein B1 OS=Mus musculus GN=Foxb1 PE=2 SV=2 Back     alignment and function description
>sp|Q99853|FOXB1_HUMAN Forkhead box protein B1 OS=Homo sapiens GN=FOXB1 PE=2 SV=3 Back     alignment and function description
>sp|Q12952|FOXL1_HUMAN Forkhead box protein L1 OS=Homo sapiens GN=FOXL1 PE=2 SV=2 Back     alignment and function description
>sp|Q64731|FOXL1_MOUSE Forkhead box protein L1 OS=Mus musculus GN=Foxl1 PE=2 SV=2 Back     alignment and function description
>sp|Q8AWH1|FOXA1_XENTR Forkhead box protein A1 OS=Xenopus tropicalis GN=foxa1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
195175447 571 GL15611 [Drosophila persimilis] gi|19410 0.564 0.390 0.551 5e-69
126002470 569 GA10799 [Drosophila pseudoobscura pseudo 0.564 0.391 0.547 1e-68
91076112299 PREDICTED: similar to Dvir_CG11152 [Trib 0.6 0.792 0.574 2e-68
194746769 601 GF10343 [Drosophila ananassae] gi|190629 0.605 0.397 0.501 1e-67
270014709286 hypothetical protein TcasGA2_TC004761 [T 0.544 0.751 0.612 3e-67
242011014449 Meiosis-specific transcription factor me 0.592 0.521 0.584 6e-66
357608636306 hypothetical protein KGM_06490 [Danaus p 0.511 0.660 0.622 1e-65
195133960 587 GI14084 [Drosophila mojavensis] gi|19391 0.394 0.265 0.671 2e-65
195354433 599 GM26767 [Drosophila sechellia] gi|194128 0.635 0.419 0.485 2e-65
194913474 604 GG16435 [Drosophila erecta] gi|190647922 0.754 0.493 0.452 2e-65
>gi|195175447|ref|XP_002028464.1| GL15611 [Drosophila persimilis] gi|194103196|gb|EDW25239.1| GL15611 [Drosophila persimilis] Back     alignment and taxonomy information
 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 162/294 (55%), Positives = 180/294 (61%), Gaps = 71/294 (24%)

Query: 42  LPIEQYRIQLYNYAIQAERLRLSQQYGT------------PYTNYQT-PNVNRVMNY--- 85
           + +EQYR+QLYNYA+  ER R  Q YGT            PY    T   VNR+      
Sbjct: 49  MALEQYRLQLYNYALNIERFRCPQ-YGTAGGASTPWMHMNPYAAQSTGTGVNRMTALSTI 107

Query: 86  -FHPRFQ--ISSEEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGW 142
              P+ Q     EEPKPQHSYIGLIAMAILSS EMKLVLSDIYQYILDNYSYFR+RGPGW
Sbjct: 108 SLFPQSQRIFQPEEPKPQHSYIGLIAMAILSSTEMKLVLSDIYQYILDNYSYFRSRGPGW 167

Query: 143 RNSIRHNLSLNDCFIKAGRSANGKGHYWSIHPANVDDFKKGDFRRRKAQRKVRRHMGLSV 202
           RNSIRHNLSLNDCFIK+GRSANGKGHYW+IHPAN+DDF+KGDFRRRKAQRKVR+HMGLSV
Sbjct: 168 RNSIRHNLSLNDCFIKSGRSANGKGHYWAIHPANMDDFRKGDFRRRKAQRKVRKHMGLSV 227

Query: 203 DDDNDSNSPPPLS---------------PPLTFP------NILFS------------SHP 229
           DD  DS SPPPL                  L++P         F+            SHP
Sbjct: 228 DDSTDSPSPPPLDLTTPPPPSSQATIQLAALSYPYHQNYIGQFFNRNSDTASPHYSVSHP 287

Query: 230 FQCF---PQMLPP-----------LGSTNTTSPC----ISRKRQFDVDSLLAPD 265
            Q     P  L P           + ST TT+       +RKRQFDV SLLAPD
Sbjct: 288 VQTLQRQPNCLEPSIQQAHQHIAYINSTTTTTIANMYSQTRKRQFDVASLLAPD 341

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|126002470|ref|XP_001352355.1| GA10799 [Drosophila pseudoobscura pseudoobscura] gi|54640636|gb|EAL29406.1| GA10799 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|91076112|ref|XP_969382.1| PREDICTED: similar to Dvir_CG11152 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|194746769|ref|XP_001953446.1| GF10343 [Drosophila ananassae] gi|190629342|gb|EDV44759.1| GF10343 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|270014709|gb|EFA11157.1| hypothetical protein TcasGA2_TC004761 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242011014|ref|XP_002426252.1| Meiosis-specific transcription factor mei4, putative [Pediculus humanus corporis] gi|212510315|gb|EEB13514.1| Meiosis-specific transcription factor mei4, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|357608636|gb|EHJ66075.1| hypothetical protein KGM_06490 [Danaus plexippus] Back     alignment and taxonomy information
>gi|195133960|ref|XP_002011406.1| GI14084 [Drosophila mojavensis] gi|193912029|gb|EDW10896.1| GI14084 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195354433|ref|XP_002043702.1| GM26767 [Drosophila sechellia] gi|194128890|gb|EDW50933.1| GM26767 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|194913474|ref|XP_001982706.1| GG16435 [Drosophila erecta] gi|190647922|gb|EDV45225.1| GG16435 [Drosophila erecta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
FB|FBgn0039937 599 fd102C "forkhead domain 102C" 0.329 0.217 0.666 2.3e-62
WB|WBGene00001442194 fkh-10 [Caenorhabditis elegans 0.265 0.541 0.666 1.6e-38
UNIPROTKB|O17593194 fkh-10 "Protein FKH-10" [Caeno 0.265 0.541 0.666 1.6e-38
ZFIN|ZDB-GENE-050208-663263 foxq2 "forkhead box Q2" [Danio 0.250 0.376 0.613 3.4e-34
UNIPROTKB|Q2V896329 FoxQ2 "Forkhead transcription 0.222 0.267 0.613 5.6e-29
FB|FBgn0004897372 fd96Ca "forkhead domain 96Ca" 0.222 0.236 0.555 2e-28
UNIPROTKB|Q9XZM6360 fkh1 "Winged helix transcripti 0.227 0.25 0.521 4.1e-28
UNIPROTKB|Q28BS5373 foxf1 "Forkhead box protein F1 0.222 0.235 0.544 6.4e-26
UNIPROTKB|Q9W706373 foxf1-a "Forkhead box protein 0.222 0.235 0.544 6.4e-26
UNIPROTKB|Q9W707372 foxf1-b "Forkhead box protein 0.222 0.236 0.544 6.4e-26
FB|FBgn0039937 fd102C "forkhead domain 102C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 476 (172.6 bits), Expect = 2.3e-62, Sum P(3) = 2.3e-62
 Identities = 94/141 (66%), Positives = 110/141 (78%)

Query:    69 TPYTNYQT---PNVNRV-----MNYFHPRFQ--ISSEEPKPQHSYIGLIAMAILSSPEMK 118
             +PY ++ +   P+VNR+     ++ F P+ Q     EEPKPQHSYIGLIAMAILSS +MK
Sbjct:    91 SPYGHHGSGSLPSVNRMAALSTISLF-PQTQRIFQPEEPKPQHSYIGLIAMAILSSTDMK 149

Query:   119 LVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRSANGKGHYWSIHPANVD 178
             LVLSDIYQYILDNY YFR+RGPGWRNSIRHNLSLNDCFIK+GRSANGKGHYW+IHPAN++
Sbjct:   150 LVLSDIYQYILDNYPYFRSRGPGWRNSIRHNLSLNDCFIKSGRSANGKGHYWAIHPANME 209

Query:   179 DFKKGDFXXXXXXXXXXXHMG 199
             DF+KGDF           HMG
Sbjct:   210 DFRKGDFRRRKAQRKVRKHMG 230
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IBA
GO:0008134 "transcription factor binding" evidence=IBA
GO:0009790 "embryo development" evidence=IBA
GO:0007389 "pattern specification process" evidence=IBA
GO:0008301 "DNA binding, bending" evidence=IBA
GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0005667 "transcription factor complex" evidence=IBA
GO:0003690 "double-stranded DNA binding" evidence=IBA
GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0009888 "tissue development" evidence=IBA
WB|WBGene00001442 fkh-10 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O17593 fkh-10 "Protein FKH-10" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-663 foxq2 "forkhead box Q2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q2V896 FoxQ2 "Forkhead transcription factor Q2" [Strongylocentrotus purpuratus (taxid:7668)] Back     alignment and assigned GO terms
FB|FBgn0004897 fd96Ca "forkhead domain 96Ca" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XZM6 fkh1 "Winged helix transcription factor Forkhead-1" [Strongylocentrotus purpuratus (taxid:7668)] Back     alignment and assigned GO terms
UNIPROTKB|Q28BS5 foxf1 "Forkhead box protein F1" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q9W706 foxf1-a "Forkhead box protein F1-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q9W707 foxf1-b "Forkhead box protein F1-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
cd0005978 cd00059, FH, Forkhead (FH), also known as a "winge 1e-41
smart0033989 smart00339, FH, FORKHEAD 3e-40
pfam0025096 pfam00250, Fork_head, Fork head domain 8e-40
COG5025610 COG5025, COG5025, Transcription factor of the Fork 1e-15
COG5025 610 COG5025, COG5025, Transcription factor of the Fork 2e-10
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix" Back     alignment and domain information 
 Score =  141 bits (357), Expect = 1e-41
 Identities = 46/78 (58%), Positives = 56/78 (71%), Gaps = 2/78 (2%)

Query: 98  KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
           KP +SY  LIAMAI SSPE +L LS+IY++I DN+ YFR    GW+NSIRHNLSLN CF+
Sbjct: 1   KPPYSYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFV 60

Query: 158 KAGRS--ANGKGHYWSIH 173
           K  R     GKG YW++ 
Sbjct: 61  KVPREPDEPGKGSYWTLD 78

FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix. Length = 78
>gnl|CDD|214627 smart00339, FH, FORKHEAD Back     alignment and domain information
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
KOG3563|consensus454 100.0
KOG3562|consensus277 100.0
PF0025096 Fork_head: Fork head domain; InterPro: IPR001766 T 100.0
cd0005978 FH Forkhead (FH), also known as a "winged helix". 100.0
smart0033989 FH FORKHEAD. FORKHEAD, also known as a "winged hel 100.0
KOG2294|consensus454 99.97
KOG4385|consensus581 99.96
COG5025610 Transcription factor of the Forkhead/HNF3 family [ 99.78
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 99.46
PF0053877 Linker_histone: linker histone H1 and H5 family; I 91.43
smart0052666 H15 Domain in histone families 1 and 5. 90.34
cd0007388 H15 linker histone 1 and histone 5 domains; the ba 86.15
PF0935465 HNF_C: HNF3 C-terminal domain; InterPro: IPR018533 81.64
>KOG3563|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.7e-46  Score=366.33  Aligned_cols=106  Identities=44%  Similarity=0.851  Sum_probs=101.5

Q ss_pred             CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccCCCCccccccccccccchhcccCcC--CCCCcceeee
Q psy723           95 EEPKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRS--ANGKGHYWSI  172 (395)
Q Consensus        95 ~~~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~~~gWKNSIRHNLSlN~~FvKv~R~--~~GKG~~Wtl  172 (395)
                      ...||||||+.||.|||+.+|.|+|||+|||+||++-|||||.+...|||||||.||+|+||+||.|.  .+|||+||+|
T Consensus       170 ~haKPPYSYISLITMAIQ~~pskmLTLSEIYqwIMDLFPyYrqNQQRWQNSIRHSLSFNDCFVKVaRSPDKPGKGSfWTL  249 (454)
T KOG3563|consen  170 THAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSFWTL  249 (454)
T ss_pred             cCCCCChhHHHHHHHHHHhCCccceeHHHHHHHHHHhhhHhhhhHHHHHhhhhhhccccceeeeccCCCCCCCCccceee
Confidence            35799999999999999999999999999999999999999999999999999999999999999996  4899999999


Q ss_pred             cCCchhhhccccchhhhhHHHHhhhcCC
Q psy723          173 HPANVDDFKKGDFRRRKAQRKVRRHMGL  200 (395)
Q Consensus       173 dP~~~~~f~~g~~rRRk~~rk~rk~~~~  200 (395)
                      +|++.++|++|.+.||.||.|+.|+.+.
T Consensus       250 HpdsGNMFENGCYLRRQKRFK~ekk~~~  277 (454)
T KOG3563|consen  250 HPDSGNMFENGCYLRRQKRFKCEKKEAS  277 (454)
T ss_pred             cCCcCcccccchhehhhhhhhhhhhhcc
Confidence            9999999999999999999999887764

>KOG3562|consensus Back     alignment and domain information
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [] Back     alignment and domain information
>cd00059 FH Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>smart00339 FH FORKHEAD Back     alignment and domain information
>KOG2294|consensus Back     alignment and domain information
>KOG4385|consensus Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication) Back     alignment and domain information
>smart00526 H15 Domain in histone families 1 and 5 Back     alignment and domain information
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Back     alignment and domain information
>PF09354 HNF_C: HNF3 C-terminal domain; InterPro: IPR018533 This presumed domain is found in the C-terminal region of Hepatocyte Nuclear Factor 3 alpha and beta chains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
2hdc_A97 Structure Of Transcription Factor GenesisDNA COMPLE 3e-22
2hfh_A109 The Nmr Structures Of A Winged Helix Protein: Genes 1e-21
1d5v_A94 Solution Structure Of The Forkhead Domain Of The Ad 2e-21
1vtn_C102 Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Reco 8e-21
1kq8_A100 Solution Structure Of Winged Helix Protein Hfh-1 Le 8e-18
1jxs_A98 Solution Structure Of The Dna-Binding Domain Of Int 5e-17
2c6y_A111 Crystal Structure Of Interleukin Enhancer-Binding F 6e-17
2a3s_A101 Solution Structure And Dynamics Of Dna-Binding Doma 1e-16
3g73_A142 Structure Of The Foxm1 Dna Binding Length = 142 1e-16
1e17_A150 Solution Structure Of The Dna Binding Domain Of The 1e-13
3l2c_A110 Crystal Structure Of The Dna Binding Domain Of Foxo 1e-13
3co7_C117 Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Le 9e-13
2uzk_A97 Crystal Structure Of The Human Foxo3a-Dbd Bound To 6e-12
3co6_C100 Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Le 6e-12
2k86_A103 Solution Structure Of Foxo3a Forkhead Domain Length 7e-12
2a07_F93 Crystal Structure Of Foxp2 Bound Specifically To Dn 2e-11
2kiu_A87 Solution Structure And Backbone Dynamics Of The Dna 6e-11
3qrf_F82 Structure Of A Domain-Swapped Foxp3 Dimer Length = 7e-11
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX Length = 97 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 98  KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
           KP +SYI LI MAIL SP+ KL LS I ++I + + Y+R + P W+NSIRHNLSLNDCF+
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 158 KAGRSAN--GKGHYWSIHPANVDDFKKGDF 185
           K  R     GKG+YW++ P + D F  G F
Sbjct: 62  KIPREPGNPGKGNYWTLDPQSEDMFDNGSF 91
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20 Structures Length = 109 Back     alignment and structure
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12) Length = 94 Back     alignment and structure
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition Motif Resembles Histone H5 Length = 102 Back     alignment and structure
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1 Length = 100 Back     alignment and structure
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Interleukin Enhancer Binding Factor Length = 98 Back     alignment and structure
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1 Bound To Dna Length = 111 Back     alignment and structure
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of Myocyte Nuclear Factor Length = 101 Back     alignment and structure
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding Length = 142 Back     alignment and structure
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound To Dna Length = 110 Back     alignment and structure
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Length = 117 Back     alignment and structure
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna Length = 97 Back     alignment and structure
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Length = 100 Back     alignment and structure
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain Length = 103 Back     alignment and structure
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna. Length = 93 Back     alignment and structure
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The Dna-Binding Domain Of Foxp1: Insight Into Its Domain Swapping Length = 87 Back     alignment and structure
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer Length = 82 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 1e-54
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 2e-53
2hdc_A97 Protein (transcription factor); structure, dyanami 1e-52
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 3e-52
2c6y_A111 Forkhead box protein K2; transcription regulation, 2e-51
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 4e-43
3bpy_A85 FORK head domain, forkhead transcription factor FO 7e-43
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 9e-43
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 2e-42
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 3e-42
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 4e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102 Back     alignment and structure
 Score =  174 bits (444), Expect = 1e-54
 Identities = 48/100 (48%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 97  PKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCF 156
            KP +SYI LI MAI  +P   L LS+IYQ+I+D + Y+R     W+NSIRH+LS NDCF
Sbjct: 2   AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCF 61

Query: 157 IKAGRSAN--GKGHYWSIHPANVDDFKKGDFRRRKAQRKV 194
           +K  RS +  GKG YW++HP++ + F+ G + RR+ + K+
Sbjct: 62  VKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFKL 101
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109 Back     alignment and structure
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 97 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 100 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Length = 111 Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Length = 117 Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} SCOP: a.4.5.14 Length = 85 Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Length = 142 Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Length = 93 Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} PDB: 3co6_C* Length = 110 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
2hdc_A97 Protein (transcription factor); structure, dyanami 100.0
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 100.0
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 100.0
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 100.0
2c6y_A111 Forkhead box protein K2; transcription regulation, 100.0
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 100.0
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 100.0
3bpy_A85 FORK head domain, forkhead transcription factor FO 100.0
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 100.0
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 100.0
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 100.0
1uss_A88 Histone H1; DNA binding protein, linker histone, D 80.85
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
Probab=100.00  E-value=1.3e-41  Score=283.64  Aligned_cols=94  Identities=53%  Similarity=0.995  Sum_probs=90.1

Q ss_pred             CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccCCCCccccccccccccchhcccCcC--CCCCcceeeecC
Q psy723           97 PKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRS--ANGKGHYWSIHP  174 (395)
Q Consensus        97 ~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~~~gWKNSIRHNLSlN~~FvKv~R~--~~GKG~~WtldP  174 (395)
                      .||||||++||+|||++||+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|.  .+|||+||+|+|
T Consensus         1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p   80 (97)
T 2hdc_A            1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP   80 (97)
T ss_dssp             CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred             CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence            499999999999999999999999999999999999999999999999999999999999999986  479999999999


Q ss_pred             Cchhhhccccchhhhh
Q psy723          175 ANVDDFKKGDFRRRKA  190 (395)
Q Consensus       175 ~~~~~f~~g~~rRRk~  190 (395)
                      ++.++|++|.++||++
T Consensus        81 ~~~~~f~~g~~~rrr~   96 (97)
T 2hdc_A           81 QSEDMFDNGSFLRRRK   96 (97)
T ss_dssp             THHHHHHHSCCCSSSC
T ss_pred             CHHHHHhCCCccCCCC
Confidence            9999999999987764
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C* Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Back     alignment and structure
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 395
d2hdca_97 a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [Ta 2e-39
d2c6ya198 a.4.5.14 (A:1-98) Interleukin enhancer binding fac 1e-38
d1d5va_94 a.4.5.14 (A:) Adipocyte-transcription factor FREAC 2e-37
d3bpya185 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapie 5e-33
d2a07f182 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP 1e-31
d1kq8a_75 a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Ra 5e-31
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  134 bits (338), Expect = 2e-39
 Identities = 50/96 (52%), Positives = 66/96 (68%), Gaps = 2/96 (2%)

Query: 98  KPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFI 157
           KP +SYI LI MAIL SP+ KL LS I ++I + + Y+R + P W+NSIRHNLSLNDCF+
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61

Query: 158 KAGRSAN--GKGHYWSIHPANVDDFKKGDFRRRKAQ 191
           K  R     GKG+YW++ P + D F  G F RR+ +
Sbjct: 62  KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 75 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
d2hdca_97 Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} 100.0
d2c6ya198 Interleukin enhancer binding factor {Human (Homo s 100.0
d1d5va_94 Adipocyte-transcription factor FREAC-11 (s12, fkh- 100.0
d2a07f182 Forkhead box protein P2, FOXP2 {Human (Homo sapien 100.0
d3bpya185 Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1kq8a_75 HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv 99.98
d1hsta_74 Histone H5, globular domain {Chicken (Gallus gallu 90.82
d1usta_92 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 90.32
d1ussa_88 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 89.48
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.9e-40  Score=270.55  Aligned_cols=94  Identities=53%  Similarity=0.995  Sum_probs=89.6

Q ss_pred             CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCccccCCCCccccccccccccchhcccCcC--CCCCcceeeecC
Q psy723           97 PKPQHSYIGLIAMAILSSPEMKLVLSDIYQYILDNYSYFRTRGPGWRNSIRHNLSLNDCFIKAGRS--ANGKGHYWSIHP  174 (395)
Q Consensus        97 ~KPPySYa~LI~~AI~sSP~kkLTLsEIY~~I~~~fPYyR~~~~gWKNSIRHNLSlN~~FvKv~R~--~~GKG~~WtldP  174 (395)
                      +||||||++||++||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||+|.  ..|||+||+|+|
T Consensus         1 vKPp~sY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyfr~~~~gWkNSIRHnLSln~~F~kv~~~~~~~gKg~~W~l~p   80 (97)
T d2hdca_           1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP   80 (97)
T ss_dssp             CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred             CCCCCcHHHHHHHHHHhCCCcCccHHHHHHHHHHhCccccCCCCCchhhhhhhcchhhhhcccCCCCCCCCCCcEEEECc
Confidence            599999999999999999999999999999999999999999999999999999999999999986  469999999999


Q ss_pred             Cchhhhccccchhhhh
Q psy723          175 ANVDDFKKGDFRRRKA  190 (395)
Q Consensus       175 ~~~~~f~~g~~rRRk~  190 (395)
                      ++.+.|++|.++||++
T Consensus        81 ~~~~~~~~~~~~rrrk   96 (97)
T d2hdca_          81 QSEDMFDNGSFLRRRK   96 (97)
T ss_dssp             THHHHHHHSCCCSSSC
T ss_pred             cHHHHhhcCCccccCC
Confidence            9999999999887764
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure