Psyllid ID: psy7256

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MNDHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGVAVCSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDLNGAKRPVIPIATSGEVFPWNNVRLPTSTGMPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDGEFLYSRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWERKYLHKIMLKFLNVVENIPEEGDIPSNIVRYCERFIEFNSTRVPSERKLLLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSYLQ
ccccccccHHHHccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEEEcEEcccccccccccccccccccccccEEEEcccEEEcccccccEEEEEEccccccccccccccEEEEccccccHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHc
ccccccccEEEEEccccccccccccccccEccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHccccEEEEEEEccccEEEEEcccccccccEEEEEEEHEcccccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEcccccEEccEEEEcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcc
MNDHDVDDVAFLTGVNHyqsqngihkrslyehngvavcsQNRALIIASVVLSILFLSSLIIAYvgpqndcpcigekpvflqdedlngakrpvipiatsgevfpwnnvrlptstgmprpktsgvssaniptilstsshkygnaetkDFWSVLSKHSNHSINVKAIMDTWsrqmgfpvirisritpqhssnssttpapppmieysaTQTRFlltnepygrndsklllprspydykwyvplsyytdqtgykeQEIVWMNmtdgeflySRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWERKYLHKIMLKFLNVVenipeegdipsnIVRYCERFIEfnstrvpsERKLLLKVKAFFkdmdvgsgarsLEQSLETIELNIHWVRRNEEPIFQWLSSYLQ
MNDHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGVAVCSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDLNGAKRPVipiatsgevfpwnnvRLPTStgmprpktsgvssanIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRIsritpqhssnssttpapppMIEYSATQTRFLLTNepygrndsklllprspyDYKWYVPLSYYTDQTGYKEQEIVWMNMTDGEFlysrreqelrnvpkwrkywklimkkdnpeekeKLEWERKYLHKIMLKFLNVVENIPEEGDIPSNIVRYCERFIEfnstrvpserkLLLKVKAFFKDMdvgsgarsleqslETIElnihwvrrnEEPIFQWLSSYLQ
MNDHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGVAVCSQNRaliiasvvlsilflssliiaYVGPQNDCPCIGEKPVFLQDEDLNGAKRPVIPIATSGEVFPWNNVRLPTSTGMPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHssnssttpapppMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDGEFLYSRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWERKYLHKIMLKFLNVVENIPEEGDIPSNIVRYCERFIEFNSTRVPSERKLLLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSYLQ
*******DVAFLTGVNHYQSQNGIHKRSLYEHNGVAVCSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDLNGAKRPVIPIATSGEVFPWNNVRL********************************AETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISR**************************RFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDGEFLYSRREQELRNVPKWRKYWKLIMKK*******KLEWERKYLHKIMLKFLNVVENIPEEGDIPSNIVRYCERFIEFNSTRVPSERKLLLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSS***
****DVD*VAFLTGVNH****************GVAVCSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQ*********************PWNNVRLPTSTGMPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGR**SKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDGEFLYSRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWERKYLHKIMLKFLNVVENIPEEGDIPSNIVRYCERFIEFNSTRVPSERKLLLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSYL*
MNDHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGVAVCSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDLNGAKRPVIPIATSGEVFPWNNVRLPTSTGMPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITP***********PPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDGEFLYSRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWERKYLHKIMLKFLNVVENIPEEGDIPSNIVRYCERFIEFNSTRVPSERKLLLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSYLQ
****DVDDVAFLTGVNHY*******KRSLYEHNGVAVCSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDE*LNGAKRPVIPIATSGEVFPWNNVRLPTSTGMPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNE*******KLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDGEFLYSRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWERKYLHKIMLKFLNVVENIPEEGDIPSNIVRYCERFIEFNSTRVPSERKLLLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSYLQ
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNDHDVDDVAFLTGVNHYQSQNGIHKRSLYEHNGVAVCSQNRALIIASVVLSILFLSSLIIAYVGPQNDCPCIGEKPVFLQDEDLNGAKRPVIPIATSGEVFPWNNVRLPTSTGMPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYKEQEIVWMNMTDGEFLYSRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWERKYLHKIMLKFLNVVENIPEEGDIPSNIVRYCERFIEFNSTRVPSERKLLLKVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSYLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query398 2.2.26 [Sep-21-2011]
Q8CFQ3 1481 Intron-binding protein aq yes N/A 0.201 0.054 0.386 1e-10
O60306 1485 Intron-binding protein aq yes N/A 0.201 0.053 0.375 2e-10
Q32LQ0 956 Glutamyl aminopeptidase O no N/A 0.231 0.096 0.333 3e-08
P50123 945 Glutamyl aminopeptidase O no N/A 0.190 0.080 0.349 1e-06
Q07075 957 Glutamyl aminopeptidase O no N/A 0.201 0.083 0.327 4e-06
Q9UIQ6 1025 Leucyl-cystinyl aminopept no N/A 0.253 0.098 0.248 4e-06
Q8C129 1025 Leucyl-cystinyl aminopept no N/A 0.238 0.092 0.260 4e-06
Q8K093 1025 Thyrotropin-releasing hor no N/A 0.246 0.095 0.273 1e-05
Q10836 1025 Thyrotropin-releasing hor no N/A 0.246 0.095 0.281 1e-05
Q9UKU6 1024 Thyrotropin-releasing hor no N/A 0.108 0.041 0.478 2e-05
>sp|Q8CFQ3|AQR_MOUSE Intron-binding protein aquarius OS=Mus musculus GN=Aqr PE=2 SV=2 Back     alignment and function desciption
 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 8/88 (9%)

Query: 253 VWMNMTDGEFLYSRREQELRNVPKWRKYWKLIMKKD---NPEEKEKLEWERKYLHKIMLK 309
           +WM +       +R E EL+  PK RK+W LI K D   +PE +E+   ER++L +++ K
Sbjct: 174 MWMGLQP-----ARLELELKKTPKLRKFWNLIKKNDEKMDPEAREQAYQERRFLSRLIQK 228

Query: 310 FLNVVENIPEEGDIPSNIVRYCERFIEF 337
           F++V+++IP    +  + V YCERFIE 
Sbjct: 229 FISVLKSIPLSEPVTMDKVHYCERFIEL 256
Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre-mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing.
Mus musculus (taxid: 10090)
>sp|O60306|AQR_HUMAN Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4 Back     alignment and function description
>sp|Q32LQ0|AMPE_BOVIN Glutamyl aminopeptidase OS=Bos taurus GN=ENPEP PE=2 SV=1 Back     alignment and function description
>sp|P50123|AMPE_RAT Glutamyl aminopeptidase OS=Rattus norvegicus GN=Enpep PE=1 SV=2 Back     alignment and function description
>sp|Q07075|AMPE_HUMAN Glutamyl aminopeptidase OS=Homo sapiens GN=ENPEP PE=1 SV=3 Back     alignment and function description
>sp|Q9UIQ6|LCAP_HUMAN Leucyl-cystinyl aminopeptidase OS=Homo sapiens GN=LNPEP PE=1 SV=3 Back     alignment and function description
>sp|Q8C129|LCAP_MOUSE Leucyl-cystinyl aminopeptidase OS=Mus musculus GN=Lnpep PE=1 SV=1 Back     alignment and function description
>sp|Q8K093|TRHDE_MOUSE Thyrotropin-releasing hormone-degrading ectoenzyme OS=Mus musculus GN=Trhde PE=2 SV=1 Back     alignment and function description
>sp|Q10836|TRHDE_RAT Thyrotropin-releasing hormone-degrading ectoenzyme OS=Rattus norvegicus GN=Trhde PE=1 SV=1 Back     alignment and function description
>sp|Q9UKU6|TRHDE_HUMAN Thyrotropin-releasing hormone-degrading ectoenzyme OS=Homo sapiens GN=TRHDE PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
328703032 995 PREDICTED: endoplasmic reticulum aminope 0.278 0.111 0.598 7e-34
189233823 1704 PREDICTED: similar to AGAP006347-PA [Tri 0.268 0.062 0.576 1e-27
340709539 1004 PREDICTED: endoplasmic reticulum aminope 0.233 0.092 0.628 5e-27
328792853 1001 PREDICTED: endoplasmic reticulum aminope 0.221 0.087 0.652 5e-27
350412311 1004 PREDICTED: endoplasmic reticulum aminope 0.233 0.092 0.628 6e-27
380023453 1001 PREDICTED: LOW QUALITY PROTEIN: endoplas 0.221 0.087 0.652 8e-27
383860399 1002 PREDICTED: endoplasmic reticulum aminope 0.221 0.087 0.630 1e-26
270015121 1024 aminopeptidase N-like protein [Tribolium 0.268 0.104 0.571 4e-26
242021367 1011 Aminopeptidase N precursor, putative [Pe 0.256 0.100 0.548 2e-24
345496100 1008 PREDICTED: endoplasmic reticulum aminope 0.213 0.084 0.602 1e-23
>gi|328703032|ref|XP_003242073.1| PREDICTED: endoplasmic reticulum aminopeptidase 2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 1   MNDHDVDDVAFLTGVNHYQ-SQNGIHKRSLYEHNGVAVCSQNRALIIASVVLSILFLSSL 59
           M + +V+DVAFLT +NHY+ +Q+ +HK  +YEH  V  CS+  ALI+A   L ++FL S+
Sbjct: 1   MVEPEVEDVAFLTAINHYRDNQDMMHKSGIYEHTAVTACSRRTALIMAGTTLFLMFLCSV 60

Query: 60  IIAYVGPQNDCPCIGEKPVFLQDEDLNGAKRPVIPIATSGEVFPWNNVRLPT 111
           IIAY GPQNDCPCIGEKPVFL D+D     R +IPIAT+G++FPWNNVRLPT
Sbjct: 61  IIAYAGPQNDCPCIGEKPVFLPDDDGVNRSRSIIPIATNGDIFPWNNVRLPT 112

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189233823|ref|XP_971780.2| PREDICTED: similar to AGAP006347-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|340709539|ref|XP_003393363.1| PREDICTED: endoplasmic reticulum aminopeptidase 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328792853|ref|XP_395725.3| PREDICTED: endoplasmic reticulum aminopeptidase 2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|350412311|ref|XP_003489605.1| PREDICTED: endoplasmic reticulum aminopeptidase 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380023453|ref|XP_003695537.1| PREDICTED: LOW QUALITY PROTEIN: endoplasmic reticulum aminopeptidase 2-like [Apis florea] Back     alignment and taxonomy information
>gi|383860399|ref|XP_003705678.1| PREDICTED: endoplasmic reticulum aminopeptidase 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|270015121|gb|EFA11569.1| aminopeptidase N-like protein [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242021367|ref|XP_002431116.1| Aminopeptidase N precursor, putative [Pediculus humanus corporis] gi|212516365|gb|EEB18378.1| Aminopeptidase N precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|345496100|ref|XP_001603771.2| PREDICTED: endoplasmic reticulum aminopeptidase 2-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
FB|FBgn0051368 1486 CG31368 [Drosophila melanogast 0.178 0.047 0.541 2.9e-17
FB|FBgn0039064 1125 CG4467 [Drosophila melanogaste 0.261 0.092 0.378 3.8e-16
MGI|MGI:2387123 1025 Lnpep "leucyl/cystinyl aminope 0.128 0.049 0.313 7.6e-13
UNIPROTKB|F1MEM5 956 ENPEP "Glutamyl aminopeptidase 0.251 0.104 0.276 3.3e-12
UNIPROTKB|Q32LQ0 956 ENPEP "Glutamyl aminopeptidase 0.251 0.104 0.276 3.3e-12
ZFIN|ZDB-GENE-030131-1534 1003 lnpep "leucyl/cystinyl aminope 0.125 0.049 0.4 3.3e-12
UNIPROTKB|E2R6R0 935 ENPEP "Uncharacterized protein 0.103 0.043 0.488 1e-11
UNIPROTKB|F6XRM5 954 ENPEP "Uncharacterized protein 0.103 0.042 0.488 1.1e-11
FB|FBgn00524731036 CG32473 [Drosophila melanogast 0.165 0.063 0.318 1.1e-11
UNIPROTKB|G1M8R9 956 ENPEP "Uncharacterized protein 0.103 0.042 0.488 1.1e-11
FB|FBgn0051368 CG31368 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 241 (89.9 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 39/72 (54%), Positives = 57/72 (79%)

Query:   266 RREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWERKYLHKIMLKFLNVVENIPEEGDIPS 325
             RREQELR VP+WRKYWK ++KK+   + E L WER ++  +++ FL+++E+IP EG++P 
Sbjct:   200 RREQELREVPEWRKYWKRLLKKEKDSKPEVL-WERHFMQNLIIDFLHILESIPAEGEVPR 258

Query:   326 NIVRYCERFIEF 337
             N+V YCERF+EF
Sbjct:   259 NVVHYCERFLEF 270
GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;IC
GO:0097157 "pre-mRNA intronic binding" evidence=IEA
GO:0071011 "precatalytic spliceosome" evidence=IDA
GO:0071013 "catalytic step 2 spliceosome" evidence=IDA
FB|FBgn0039064 CG4467 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2387123 Lnpep "leucyl/cystinyl aminopeptidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MEM5 ENPEP "Glutamyl aminopeptidase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q32LQ0 ENPEP "Glutamyl aminopeptidase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1534 lnpep "leucyl/cystinyl aminopeptidase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R6R0 ENPEP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6XRM5 ENPEP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0052473 CG32473 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|G1M8R9 ENPEP "Uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
cd09601446 cd09601, M1_APN_2, Peptidase M1 Aminopeptidase N f 3e-12
COG0308 859 COG0308, PepN, Aminopeptidase N [Amino acid transp 6e-06
>gnl|CDD|189008 cd09601, M1_APN_2, Peptidase M1 Aminopeptidase N family incudes tricorn interacting factor F3, Endoplasmic reticulum aminopeptidase 1 (ERAP1), Aminopeptidase Q (APQ) Back     alignment and domain information 
 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query: 137 HKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFP 175
           H YGNA T D W  LS+ S    +VK IMDTW+ Q G+P
Sbjct: 408 HAYGNATTDDLWEALSEASKLGKDVKEIMDTWTLQPGYP 446

This M1 peptidase family includes eukaryotic and bacterial members: aminopeptidase N (APN), aminopeptidase Q (APQ, laeverin), endoplasmic reticulum aminopeptidase 1 (ERAP1) as well as tricorn interacting factor F3. Aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC 3.4.11.2), a Type II integral membrane protease, consists of a small N-terminal cytoplasmic domain, a single transmembrane domain and a large extracellular ectodomain that contains the active site. It preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is considered a marker of differentiation since it is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. ERAP1 also known as endoplasmic reticulum aminopeptidase associated with antigen processing (ERAAP), adipocyte derived leucine aminopeptidase (A-LAP) or aminopeptidase regulating tumor necrosis factor receptor I (THFRI) shedding (ARTS-1), associates with the closely related ER aminopeptidase ERAP2, for the final trimming of peptides within the ER for presentation by MHC class I molecules. ERAP1 is associated with ankylosing spondylitis (AS), an inflammatory arthritis that predominantly affects the spine. ERAP1 also aids in the shedding of membrane-bound cytokine receptors. The tricorn interacting factor F3, together with factors F1 and F2, degrades the tricorn protease products, producing free amino acids, thus completing the proteasomal degradation pathway. F3 is homologous to F2, but not F1, and shows a strong preference for glutamate in the P1' position. APQ, also known as laeverin, is specifically expressed in human embryo-derived extravillous trophoblasts (EVTs) that invade the uterus during early placentation. It cleaves the N-terminal amino acid of various peptides such as angiotensin III, endokinin C, and kisspeptin-10, all expressed in the placenta in large quantities. APN is a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs are also putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established. Length = 446
>gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 398
KOG1046|consensus882 100.0
TIGR02412 831 pepN_strep_liv aminopeptidase N, Streptomyces livi 99.91
COG0308 859 PepN Aminopeptidase N [Amino acid transport and me 99.75
PRK14015 875 pepN aminopeptidase N; Provisional 99.63
TIGR02414 863 pepN_proteo aminopeptidase N, Escherichia coli typ 99.63
TIGR02411601 leuko_A4_hydro leukotriene A-4 hydrolase/aminopept 99.29
PF11838324 ERAP1_C: ERAP1-like C-terminal domain; InterPro: I 98.82
KOG1047|consensus613 95.88
KOG1806|consensus 1320 95.86
PF01433390 Peptidase_M1: Peptidase family M1 This is family M 95.1
KOG1806|consensus 1320 91.03
>KOG1046|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-40  Score=366.02  Aligned_cols=304  Identities=26%  Similarity=0.466  Sum_probs=248.4

Q ss_pred             HHHHHHHHHHHHhcCCcCCCCCCCcceec---------cccCCCCCCcCC----CCCCcCCCCCCCCCCcccccC-----
Q psy7256          53 ILFLSSLIIAYVGPQNDCPCIGEKPVFLQ---------DEDLNGAKRPVI----PIATSGEVFPWNNVRLPTSTG-----  114 (398)
Q Consensus        53 ~~~gfAt~~ey~~~~~~~P~w~~~~~Fv~---------D~~~ss~t~pv~----~~~~i~~~Fdw~~~~IsY~KG-----  114 (398)
                      +-=|||+||+|++++.++|+|.++++|+.         |+..++  |||.    .+.+|.++||    .|+|.||     
T Consensus       351 LnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~s--hpi~~~v~~~~ei~e~fd----~i~Y~KGasvlR  424 (882)
T KOG1046|consen  351 LNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASS--HPISVPVESPSEIDEIFD----EISYQKGASVLR  424 (882)
T ss_pred             hcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhccccc--CCeeeecCCcchhhhhhh----hhhhhHHHHHHH
Confidence            33399999999999999999999998765         888886  8874    5777888999    9999999     


Q ss_pred             CchhhhhccccCccchhHHHhhhccCCCChHHHHHHHHhhcCCCccHHHHHHHHHccCCccEEEEEecCCCCCCCCCCCC
Q psy7256         115 MPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTP  194 (398)
Q Consensus       115 Ml~~F~~Gl~~F~~a~~~YL~~~~y~na~~~DLw~aL~~~~~~~~~v~~~m~sW~~q~GyPvv~v~~~~~~~~~~~~~~~  194 (398)
                      ||+.+. |...|++|++.||++|+|+||+++|||++|+  .+.+.+|+++|++||.|+|||||+|.++++          
T Consensus       425 ML~~~l-Ge~~F~~gi~~yL~~~~y~na~~~DLw~~l~--~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----------  491 (882)
T KOG1046|consen  425 MLESLL-GEEVFRKGLRSYLKKHQYSNAKTEDLWDALE--EGSGLDVSELMDTWTKQMGYPVVTVERNGD----------  491 (882)
T ss_pred             HHHHHH-CHHHHHHHHHHHHHHhccCCCCchhHHHHHh--ccCCCCHHHHHhhhhcCCCCceEEEEecCC----------
Confidence            886666 5566777777999999999999999999999  344569999999999999999999999887          


Q ss_pred             CCCCCeeEEEEEeeeccCCCCCCCCCCCCCCCCCCCCCeeEEeEEEEECCCCcc-----c---------eeeeeeecccc
Q psy7256         195 APPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYK-----E---------QEIVWMNMTDG  260 (398)
Q Consensus       195 ~~~~~~~i~l~Q~rf~~~~~~~~~~~~~~~~~~~~~~~~W~IPl~~~t~~~~~~-----~---------~~~~WLnl~s~  260 (398)
                            .++++|+||+.....            ++..++|+|||+|.+.+.+.+     +         .+..|+..+..
T Consensus       492 ------~~~l~Q~rf~~~~~~------------~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~wi~~N~~  553 (882)
T KOG1046|consen  492 ------SLTLTQERFLSDPDP------------SEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPESDQWIKVNLE  553 (882)
T ss_pred             ------EEEEehhhhccCCCc------------cccCcccceeEEEEcCCCCccceeeecCCCcceecCCCCeEEEEeCC
Confidence                  789999999987542            125799999999998866421     0         01124333211


Q ss_pred             --------------------------------------------------------------------------------
Q psy7256         261 --------------------------------------------------------------------------------  260 (398)
Q Consensus       261 --------------------------------------------------------------------------------  260 (398)
                                                                                                      
T Consensus       554 ~~g~yRV~Yd~~~w~~l~~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~  633 (882)
T KOG1046|consen  554 QTGYYRVNYDDENWALLIEQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLH  633 (882)
T ss_pred             cceEEEEEeCHHHHHHHHHHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHh
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy7256         261 --------------------------------------------------------------------------------  260 (398)
Q Consensus       261 --------------------------------------------------------------------------------  260 (398)
                                                                                                      
T Consensus       634 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~~~~ip~~lr~  713 (882)
T KOG1046|consen  634 SLEDTEIYSKFKEFVKKLILPIFEKLGWSDGADSSLDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAGTNPIPPDLRE  713 (882)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCCCChhhhh
Confidence                                                                                            


Q ss_pred             -ccchhhhhhhhcCchhHHHHHHHHHccCCHHHHHHHHHH------HHHHHHHHH-----------HHHHhh---ccCCC
Q psy7256         261 -EFLYSRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWE------RKYLHKIML-----------KFLNVV---ENIPE  319 (398)
Q Consensus       261 -Vy~~g~r~~~L~~~~~W~klw~~y~kt~~~~EK~kll~~------~~~L~~ll~-----------D~~~vi---~~i~~  319 (398)
                       |||.+++++   +++.|+++|++|+++..++||.+++.+      .+.|.++++           |.+.++   ..++.
T Consensus       714 ~vy~~~~~~g---~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~  790 (882)
T KOG1046|consen  714 VVYCTAVQFG---TEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPR  790 (882)
T ss_pred             hhhhHHHHhc---CHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcc
Confidence             788777766   788999999999999999999999997      555666663           555555   45558


Q ss_pred             CCCCchhHHH-----HHHHH-----HHhhhcCCc---chHHHHHHHHHhhhcc-cCCchhhHHHHHHHHHHHHHHHHHhC
Q psy7256         320 EGDIPSNIVR-----YCERF-----IEFNSTRVP---SERKLLLKVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRN  385 (398)
Q Consensus       320 G~~lawdfv~-----~~eRf-----l~~lI~~vt---t~~~~l~~~~~Ff~~~-~~g~~~~~~~qalEti~~NI~Wl~~n  385 (398)
                      |..+||+|++     +.+||     ++++|..++   ++...+.+++.||... ..+. .++++||+|+++.||+|++++
T Consensus       791 g~~~a~~~~~~n~~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~le~~~~ni~W~~~~  869 (882)
T KOG1046|consen  791 GVELAWKFLQDNWKELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGA-ERALQQALETVKANIQWVERN  869 (882)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchh-hHHHHHHHHHHHhhhhHHHhh
Confidence            9999999998     56664     777877777   3349999999999988 4454 899999999999999999999


Q ss_pred             hHHHHHHHhhhc
Q psy7256         386 EEPIFQWLSSYL  397 (398)
Q Consensus       386 ~~~i~~Wl~~~~  397 (398)
                      .+.+.+||....
T Consensus       870 ~~~l~~~l~~~~  881 (882)
T KOG1046|consen  870 EENLTQWLLEAL  881 (882)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998754

>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14015 pepN aminopeptidase N; Provisional Back     alignment and domain information
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type Back     alignment and domain information
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase Back     alignment and domain information
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G [] Back     alignment and domain information
>KOG1047|consensus Back     alignment and domain information
>KOG1806|consensus Back     alignment and domain information
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification Back     alignment and domain information
>KOG1806|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
4fyq_A903 Human Aminopeptidase N (Cd13) Length = 903 8e-05
1z1w_A 780 Crystal Structures Of The Tricorn Interacting Facor 8e-05
3q7j_A 780 Engineered Thermoplasma Acidophilum F3 Factor Mimic 8e-05
4f5c_A959 Crystal Structure Of The Spike Receptor Binding Dom 2e-04
4h5h_A908 Crystal Structure Of Porcine Aminopeptidase-N Compl 2e-04
4fke_A909 Crystal Structure Of Porcine Aminopeptidase-N Lengt 2e-04
4hol_A908 Crystal Structure Of Porcine Aminopeptidase-N Compl 2e-04
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13) Length = 903 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 340 TRVPSERKLLLKVKAFFKDMD---VGSGARSLEQSLETIELNIHWVRRNEEPIFQWLS 394
           TR  S    L +++ F KD +    GSG R+LEQ+LE  + NI WV+ N+E + QW +
Sbjct: 842 TRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQWFT 899
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3 From Thermoplasma Acidophilum, A Zinc Aminopeptidase In Three Different Conformations Length = 780 Back     alignment and structure
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human Aminopeptidase N (Apn) As A Target For Anticancer Drug Development Length = 780 Back     alignment and structure
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of A Porcine Respiratory Coronavirus In Complex With The Pig Aminopeptidase N Ectodomain Length = 959 Back     alignment and structure
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Cleaved Poly-Alanine Length = 908 Back     alignment and structure
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Length = 909 Back     alignment and structure
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Poly- Alanine Length = 908 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
1z5h_A 780 Tricorn protease interacting factor F3; zinc amino 2e-18
1z5h_A780 Tricorn protease interacting factor F3; zinc amino 2e-08
2xdt_A 897 Endoplasmic reticulum aminopeptidase 1; glycoprote 8e-17
2xdt_A897 Endoplasmic reticulum aminopeptidase 1; glycoprote 9e-11
3se6_A 967 Endoplasmic reticulum aminopeptidase 2; thermolysi 8e-17
3se6_A967 Endoplasmic reticulum aminopeptidase 2; thermolysi 8e-10
3cia_A605 Cold-active aminopeptidase; psychrohilic, hydrolas 3e-10
3rjo_A419 Endoplasmic reticulum aminopeptidase 1; ERAP1, hyd 3e-10
3rjo_A 419 Endoplasmic reticulum aminopeptidase 1; ERAP1, hyd 1e-04
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 6e-10
3b7s_A616 Leukotriene A-4 hydrolase; transition state, analo 8e-10
3ebh_A 889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 3e-06
2gtq_A 867 Aminopeptidase N; alanine aminopeptidase, M1 famil 2e-05
3b34_A 891 Aminopeptidase N; protease, hydrolase, thermolysin 8e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Length = 780 Back     alignment and structure
 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 33/109 (30%)

Query: 137 HKYGNAETKDFWSVLSKHSNHSINVKAIMDTWSRQMGFPVIRISRITPQHSSNSSTTPAP 196
           HK+GNAE  D W+ +   S     VK +M+ W +  G+PVI++ R   +           
Sbjct: 381 HKFGNAEGSDLWTAIEDVSG--KPVKRVMEYWIKNPGYPVIKLKRNGRK----------- 427

Query: 197 PPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQT 245
                 +  QTRFLL                   + +W VP++      
Sbjct: 428 -----ITMYQTRFLLN---------------GEEEGRWPVPVNIKKKDG 456
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Length = 780 Back     alignment and structure
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} Length = 967 Back     alignment and structure
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} Length = 967 Back     alignment and structure
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Length = 605 Back     alignment and structure
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens} Length = 419 Back     alignment and structure
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens} Length = 419 Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 Back     alignment and structure
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide, hydrolysis, hydrolase, leukotriene biosynthesis, metal-binding, metalloprotease; 1.47A {Homo sapiens} SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L* 2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ... Length = 616 Back     alignment and structure
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Length = 889 Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Length = 867 Back     alignment and structure
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Length = 891 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
3se6_A967 Endoplasmic reticulum aminopeptidase 2; thermolysi 100.0
4fke_A909 Aminopeptidase N; zinc aminopeptidase, hydrolase; 100.0
2xdt_A897 Endoplasmic reticulum aminopeptidase 1; glycoprote 100.0
1z5h_A780 Tricorn protease interacting factor F3; zinc amino 100.0
3rjo_A419 Endoplasmic reticulum aminopeptidase 1; ERAP1, hyd 99.94
3ebh_A 889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 99.68
2gtq_A 867 Aminopeptidase N; alanine aminopeptidase, M1 famil 99.63
3b34_A 891 Aminopeptidase N; protease, hydrolase, thermolysin 99.62
3u9w_A608 Leukotriene A-4 hydrolase; hydrolase-hydrolase inh 99.54
3cia_A605 Cold-active aminopeptidase; psychrohilic, hydrolas 99.28
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 99.17
4fgm_A597 Aminopeptidase N family protein; structural genomi 88.03
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-43  Score=392.31  Aligned_cols=312  Identities=22%  Similarity=0.342  Sum_probs=244.5

Q ss_pred             HHHHHHHHHHHHHHhcCCcCCCCCCCcceec--------cccCCCCCCcCC----CCCCcCCCCCCCCCCcccccC----
Q psy7256          51 LSILFLSSLIIAYVGPQNDCPCIGEKPVFLQ--------DEDLNGAKRPVI----PIATSGEVFPWNNVRLPTSTG----  114 (398)
Q Consensus        51 ~~~~~gfAt~~ey~~~~~~~P~w~~~~~Fv~--------D~~~ss~t~pv~----~~~~i~~~Fdw~~~~IsY~KG----  114 (398)
                      +++-=|||+||+|++++.++|+|++++.|+.        |+..++  ||+.    .|.++.++||    .|+|.||    
T Consensus       389 lWLnEGFAty~e~~~~~~~~p~~~~~~~~~~~~~~al~~D~~~~~--~Pi~~~v~~~~~i~~~Fd----~i~Y~KGa~vL  462 (967)
T 3se6_A          389 IWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSS--RPISKPAETPTQIQEMFD----EVSYNKGACIL  462 (967)
T ss_dssp             THHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHTTTTSTTC--CCSSCCCCSHHHHHHTSS----HHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhcccCC--CCceeecCCHHHHHHhcc----hhhhhHHHHHH
Confidence            5666699999999999999999998776643        666654  8875    4566778999    9999999    


Q ss_pred             -CchhhhhccccCccchhHHHhhhccCCCChHHHHHHHHhhc-------------------------CCCccHHHHHHHH
Q psy7256         115 -MPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHS-------------------------NHSINVKAIMDTW  168 (398)
Q Consensus       115 -Ml~~F~~Gl~~F~~a~~~YL~~~~y~na~~~DLw~aL~~~~-------------------------~~~~~v~~~m~sW  168 (398)
                       ||+.++ |-+.|+++|+.||++|+|+|++++|||++|++++                         +.+.+|+++|++|
T Consensus       463 ~mL~~~l-G~e~F~~gLr~Yl~~~~~~nat~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~~W  541 (967)
T 3se6_A          463 NMLKDFL-GEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTW  541 (967)
T ss_dssp             HHHHHHH-CHHHHHHHHHHHHHHHTTEEECHHHHHHHHHCC-------------------------CCCCCCHHHHHHHH
T ss_pred             HHHHHHh-HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhccccccccccccccccccccccccCCcCHHHHHHHH
Confidence             777666 5567888888999999999999999999999963                         2356999999999


Q ss_pred             HccCCccEEEEEecCCCCCCCCCCCCCCCCCeeEEEEEeeeccCCCCCCCCCCCCCCCCCCCCCeeEEeEEEEECCCCcc
Q psy7256         169 SRQMGFPVIRISRITPQHSSNSSTTPAPPPMIEYSATQTRFLLTNEPYGRNDSKLLLPRSPYDYKWYVPLSYYTDQTGYK  248 (398)
Q Consensus       169 ~~q~GyPvv~v~~~~~~~~~~~~~~~~~~~~~~i~l~Q~rf~~~~~~~~~~~~~~~~~~~~~~~~W~IPl~~~t~~~~~~  248 (398)
                      +.|+|||+|+|+++++                .++|+|+||+.++..   .+.  ..+.+..+++|+|||+|+++.++. 
T Consensus       542 ~~q~G~Pvl~V~~~~~----------------~~~l~Q~rf~~~~~~---~~~--~~~~~~~~~~W~IPl~~~~~~~~~-  599 (967)
T 3se6_A          542 TLQKGIPLLVVKQDGC----------------SLRLQQERFLQGVFQ---EDP--EWRALQERYLWHIPLTYSTSSSNV-  599 (967)
T ss_dssp             HHSCSCEEEEEEEETT----------------EEEEEEEECCCC----------------CCSCCCCCCEEEEESSCCC-
T ss_pred             hcCCCCcEEEEEecCC----------------EEEEEeeeecCCCCC---Ccc--ccccccCCceEEEEEEEEeCCCCc-
Confidence            9999999999999543                799999999986543   000  000112468999999999876431 


Q ss_pred             ceeee----------------eeecccc----------------------------------------------------
Q psy7256         249 EQEIV----------------WMNMTDG----------------------------------------------------  260 (398)
Q Consensus       249 ~~~~~----------------WLnl~s~----------------------------------------------------  260 (398)
                       .+..                |+..+..                                                    
T Consensus       600 -~~~~~l~~~~~~i~~~~~~~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~  678 (967)
T 3se6_A          600 -IHRHILKSKTDTLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLD  678 (967)
T ss_dssp             -CEEECCCSSEEEEECSSCCSCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred             -cceEEecCCceEEeccCCCceEEEeCCccEEEEEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence             1222                3322211                                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy7256         261 --------------------------------------------------------------------------------  260 (398)
Q Consensus       261 --------------------------------------------------------------------------------  260 (398)
                                                                                                      
T Consensus       679 ~~l~l~~~l~~E~~~~~w~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~lR~~il~~a  758 (967)
T 3se6_A          679 KALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVIDRQSWSDKGSVWDRMLRSALLKLA  758 (967)
T ss_dssp             HHHHHTTGGGTCCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTHHHHHHCCSSCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -----------------------------------ccchhhhhhhhcCchhHHHHHHHHHccCCHHHHHHHHHH------
Q psy7256         261 -----------------------------------EFLYSRREQELRNVPKWRKYWKLIMKKDNPEEKEKLEWE------  299 (398)
Q Consensus       261 -----------------------------------Vy~~g~r~~~L~~~~~W~klw~~y~kt~~~~EK~kll~~------  299 (398)
                                                         |||.+++     ++++|+++|++|+++.+++||.+|+.+      
T Consensus       759 c~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~Vyc~~~~-----~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d  833 (967)
T 3se6_A          759 CDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGAQ-----TTAGWNYLLEQYELSMSSAEQNKILYALSTSKH  833 (967)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHCSCHHHHHHHHHHHTTCCC
T ss_pred             HhCCCHHHHHHHHHHHHHhhcCCCcccCChhhhhHhHhhhhc-----cHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCC
Confidence                                               4554433     367899999999999999999999997      


Q ss_pred             ----HHHHHHHHH-------HHHHhh---ccCCCCCCCchhHHH-----HHHHH------HHhhhcCCc---chHHHHHH
Q psy7256         300 ----RKYLHKIML-------KFLNVV---ENIPEEGDIPSNIVR-----YCERF------IEFNSTRVP---SERKLLLK  351 (398)
Q Consensus       300 ----~~~L~~ll~-------D~~~vi---~~i~~G~~lawdfv~-----~~eRf------l~~lI~~vt---t~~~~l~~  351 (398)
                          +++|..+++       |...++   .+++.|++++|+|++     +.+||      ++++|..++   ++.+++.+
T Consensus       834 ~~ll~~~L~~~l~~~~i~~qd~~~~~~~v~~n~~g~~~~w~f~~~nw~~i~~~~~~~~~~~~~~i~~~~~~~~t~~~l~~  913 (967)
T 3se6_A          834 QEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQE  913 (967)
T ss_dssp             HHHHHHHHHHHHHCSSSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHTTTTTCCSHHHHHH
T ss_pred             HHHHHHHHHHHhCcCcCcHhHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccCCHHHHHH
Confidence                677777775       445554   456699999999998     67776      788888887   44499999


Q ss_pred             HHHhhhcc-cCCchhhHHHHHHHHHHHHHHHHHhChHHHHHHHhhhc
Q psy7256         352 VKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEEPIFQWLSSYL  397 (398)
Q Consensus       352 ~~~Ff~~~-~~g~~~~~~~qalEti~~NI~Wl~~n~~~i~~Wl~~~~  397 (398)
                      ++.||+.+ +.|++.++++||+|+|+.||+|+++|.++|.+||+.|+
T Consensus       914 ~~~f~~~~~~~~~~~~~~~q~le~i~~ni~W~~~~~~~i~~wl~~~~  960 (967)
T 3se6_A          914 VKLFFESLEAQGSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNT  960 (967)
T ss_dssp             HHHHHHHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999987 66777899999999999999999999999999998775
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A* Back     alignment and structure
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Back     alignment and structure
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Back     alignment and structure
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Back     alignment and structure
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ... Back     alignment and structure
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Back     alignment and structure
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 398
d3b7sa3252 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase cat 6e-07
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 252 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 6e-07
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 137 HKYGNAETKDFWSVLSKHSNHSIN--VKAIMDTWSRQMGFPVIRIS 180
             Y +  T D+   L  +    ++   +   + W    G P I+ +
Sbjct: 206 FSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPN 251

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
d3b7sa3252 Leukotriene A4 hydrolase catalytic domain {Human ( 99.44
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1e-15  Score=142.29  Aligned_cols=122  Identities=11%  Similarity=0.027  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHhcCCcCCCCCCCccee---------ccccCCCCCCcCCC----C--CCcCCCCCCCCCCcccccC-
Q psy7256          51 LSILFLSSLIIAYVGPQNDCPCIGEKPVFL---------QDEDLNGAKRPVIP----I--ATSGEVFPWNNVRLPTSTG-  114 (398)
Q Consensus        51 ~~~~~gfAt~~ey~~~~~~~P~w~~~~~Fv---------~D~~~ss~t~pv~~----~--~~i~~~Fdw~~~~IsY~KG-  114 (398)
                      +++-=|||+|+++.+++.+++++.....+.         .|+....  +|+..    +  .++...|+    .++|.|| 
T Consensus       106 ~WL~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~----~~~Y~Kga  179 (252)
T d3b7sa3         106 FWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGET--HPFTKLVVDLTDIDPDVAYS----SVPYEKGF  179 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTT--CGGGSSSCCCTTCCHHHHCS----SHHHHHHH
T ss_pred             hHhhccHHHHHHHHhhccccchhhhhhhhhhhhhhHHHHHhhhhcc--CCcceeeccccccchhhccc----ceeecchh
Confidence            566679999999999998887654332211         1444443  55532    2  23344789    9999999 


Q ss_pred             ----CchhhhhccccCccchhHHHhhhccCCCChHHHHHHHHhhcCCCccHHHH----HHHHHccCCccEEEEE
Q psy7256         115 ----MPRPKTSGVSSANIPTILSTSSHKYGNAETKDFWSVLSKHSNHSINVKAI----MDTWSRQMGFPVIRIS  180 (398)
Q Consensus       115 ----Ml~~F~~Gl~~F~~a~~~YL~~~~y~na~~~DLw~aL~~~~~~~~~v~~~----m~sW~~q~GyPvv~v~  180 (398)
                          ||+..++|.+.|+++|+.|+++|+|++++++|||++++++++.  ++...    |++|+.|+|||+|+|+
T Consensus       180 ~vl~mL~~~iG~~~~f~~~lr~yl~~~~~~~~~~~df~~~l~~~~~~--~~~~~~~~~f~~W~~~~G~P~l~v~  251 (252)
T d3b7sa3         180 ALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKD--KVDVLNQVDWNAWLYSPGLPPIKPN  251 (252)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHTGG--GHHHHTTSCHHHHHHCCSSCSSCCC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--ccchhhHhHHHHHhcCCCCCeeecc
Confidence                7777776666788899999999999999999999999999986  45555    9999999999999985