Psyllid ID: psy7262
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
No hits with e-value below 0.001 by BLAST
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 840 | ||||||
| UNIPROTKB|Q7SX63 | 634 | HSP70 "Heat shock protein 70" | 0.261 | 0.347 | 0.813 | 2e-184 | |
| UNIPROTKB|P54652 | 639 | HSPA2 "Heat shock-related 70 k | 0.246 | 0.323 | 0.838 | 1.1e-183 | |
| UNIPROTKB|E2QX84 | 637 | HSPA2 "Uncharacterized protein | 0.246 | 0.324 | 0.838 | 1.1e-183 | |
| UNIPROTKB|F1SA70 | 636 | LOC100621324 "Uncharacterized | 0.246 | 0.325 | 0.838 | 1.1e-183 | |
| MGI|MGI:96243 | 633 | Hspa2 "heat shock protein 2" [ | 0.246 | 0.327 | 0.838 | 1.1e-183 | |
| RGD|620664 | 633 | Hspa2 "heat shock protein 2" [ | 0.246 | 0.327 | 0.838 | 1.1e-183 | |
| UNIPROTKB|P34933 | 636 | HSPA2 "Heat shock-related 70 k | 0.246 | 0.325 | 0.838 | 2.9e-183 | |
| UNIPROTKB|Q9TUG3 | 636 | HSPA2 "Heat shock-related 70 k | 0.246 | 0.325 | 0.838 | 6.1e-183 | |
| UNIPROTKB|P08106 | 634 | P08106 "Heat shock 70 kDa prot | 0.261 | 0.347 | 0.8 | 2.3e-181 | |
| ZFIN|ZDB-GENE-040426-1221 | 647 | hsc70 "heat shock cognate 70" | 0.260 | 0.338 | 0.826 | 3.6e-174 |
| UNIPROTKB|Q7SX63 HSP70 "Heat shock protein 70" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 2.0e-184, Sum P(2) = 2.0e-184
Identities = 179/220 (81%), Positives = 192/220 (87%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 660
+GE+NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV+EFKRK+
Sbjct: 193 AGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVEEFKRKH 252
Query: 661 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 720
K+D+ NKRA+RRLRTACERAKRTLSSSTQASIEIDSLFEG+DFYTSITRARFEELNADL
Sbjct: 253 KRDIAGNKRAVRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADL 312
Query: 721 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXX 780
FRGT+EPVEK+LRDAK+DK QI +IVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDE
Sbjct: 313 FRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAV 372
Query: 781 XXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGV 820
IL GDKSE VQD GIETAGGV
Sbjct: 373 AYGAAVQAAILMGDKSENVQDLLLLDVTPLSLGIETAGGV 412
|
|
| UNIPROTKB|P54652 HSPA2 "Heat shock-related 70 kDa protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 1.1e-183, Sum P(2) = 1.1e-183
Identities = 187/223 (83%), Positives = 196/223 (87%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T + GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRL
Sbjct: 15 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRL 74
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
IGRKFEDATVQ+DMKHWPF VVS+GGKPK++VEYKGE KTFFPEE+SSMVLTKMKE AEA
Sbjct: 75 IGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEA 134
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
YLG GK V +AVITVPAYFNDSQRQATKD+GTI GLNVLRIINEPTAAA
Sbjct: 135 YLG------------GK-VHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAA 181
Query: 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
IAYGLDKK AG GE+NVLIFDLGGGTFDVSILTIEDGIFE
Sbjct: 182 IAYGLDKK--GCAG-GEKNVLIFDLGGGTFDVSILTIEDGIFE 221
|
|
| UNIPROTKB|E2QX84 HSPA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 1.1e-183, Sum P(2) = 1.1e-183
Identities = 187/223 (83%), Positives = 196/223 (87%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T + GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRL
Sbjct: 15 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRL 74
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
IGRKFEDATVQ+DMKHWPF VVS+GGKPK++VEYKGE KTFFPEE+SSMVLTKMKE AEA
Sbjct: 75 IGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEMKTFFPEEISSMVLTKMKEIAEA 134
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
YLG GK V +AVITVPAYFNDSQRQATKD+GTI GLNVLRIINEPTAAA
Sbjct: 135 YLG------------GK-VQSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAA 181
Query: 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
IAYGLDKK AG GE+NVLIFDLGGGTFDVSILTIEDGIFE
Sbjct: 182 IAYGLDKK--GCAG-GEKNVLIFDLGGGTFDVSILTIEDGIFE 221
|
|
| UNIPROTKB|F1SA70 LOC100621324 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 1.1e-183, Sum P(2) = 1.1e-183
Identities = 187/223 (83%), Positives = 196/223 (87%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T + GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRL
Sbjct: 15 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRL 74
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
IGRKFEDATVQ+DMKHWPF VVS+GGKPK++VEYKGE KTFFPEE+SSMVLTKMKE AEA
Sbjct: 75 IGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEIKTFFPEEISSMVLTKMKEIAEA 134
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
YLG GK V +AVITVPAYFNDSQRQATKD+GTI GLNVLRIINEPTAAA
Sbjct: 135 YLG------------GK-VQSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAA 181
Query: 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
IAYGLDKK AG GE+NVLIFDLGGGTFDVSILTIEDGIFE
Sbjct: 182 IAYGLDKK--GCAG-GEKNVLIFDLGGGTFDVSILTIEDGIFE 221
|
|
| MGI|MGI:96243 Hspa2 "heat shock protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 1.1e-183, Sum P(2) = 1.1e-183
Identities = 187/223 (83%), Positives = 196/223 (87%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T + GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRL
Sbjct: 15 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRL 74
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
IGRKFEDATVQ+DMKHWPF VVS+GGKPK++VEYKGE KTFFPEE+SSMVLTKMKE AEA
Sbjct: 75 IGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEMKTFFPEEISSMVLTKMKEIAEA 134
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
YLG GK V +AVITVPAYFNDSQRQATKD+GTI GLNVLRIINEPTAAA
Sbjct: 135 YLG------------GK-VQSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAA 181
Query: 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
IAYGLDKK AG GE+NVLIFDLGGGTFDVSILTIEDGIFE
Sbjct: 182 IAYGLDKK--GCAG-GEKNVLIFDLGGGTFDVSILTIEDGIFE 221
|
|
| RGD|620664 Hspa2 "heat shock protein 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 1.1e-183, Sum P(2) = 1.1e-183
Identities = 187/223 (83%), Positives = 196/223 (87%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T + GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRL
Sbjct: 15 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRL 74
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
IGRKFEDATVQ+DMKHWPF VVS+GGKPK++VEYKGE KTFFPEE+SSMVLTKMKE AEA
Sbjct: 75 IGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEMKTFFPEEISSMVLTKMKEIAEA 134
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
YLG GK V +AVITVPAYFNDSQRQATKD+GTI GLNVLRIINEPTAAA
Sbjct: 135 YLG------------GK-VQSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAA 181
Query: 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
IAYGLDKK AG GE+NVLIFDLGGGTFDVSILTIEDGIFE
Sbjct: 182 IAYGLDKK--GCAG-GEKNVLIFDLGGGTFDVSILTIEDGIFE 221
|
|
| UNIPROTKB|P34933 HSPA2 "Heat shock-related 70 kDa protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 2.9e-183, Sum P(2) = 2.9e-183
Identities = 187/223 (83%), Positives = 196/223 (87%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T + GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRL
Sbjct: 15 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRL 74
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
IGRKFEDATVQ+DMKHWPF VVS+GGKPK++VEYKGE KTFFPEE+SSMVLTKMKE AEA
Sbjct: 75 IGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEIKTFFPEEISSMVLTKMKEIAEA 134
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
YLG GK V +AVITVPAYFNDSQRQATKD+GTI GLNVLRIINEPTAAA
Sbjct: 135 YLG------------GK-VQSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAA 181
Query: 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
IAYGLDKK AG GE+NVLIFDLGGGTFDVSILTIEDGIFE
Sbjct: 182 IAYGLDKK--GCAG-GEKNVLIFDLGGGTFDVSILTIEDGIFE 221
|
|
| UNIPROTKB|Q9TUG3 HSPA2 "Heat shock-related 70 kDa protein 2" [Capra hircus (taxid:9925)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 6.1e-183, Sum P(2) = 6.1e-183
Identities = 187/223 (83%), Positives = 196/223 (87%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T + GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRL
Sbjct: 15 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRL 74
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
IGRKFEDATVQ+DMKHWPF VVS+GGKPK++VEYKGE KTFFPEE+SSMVLTKMKE AEA
Sbjct: 75 IGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEIKTFFPEEISSMVLTKMKEIAEA 134
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
YLG GK V +AVITVPAYFNDSQRQATKD+GTI GLNVLRIINEPTAAA
Sbjct: 135 YLG------------GK-VQSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAA 181
Query: 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
IAYGLDKK AG GE+NVLIFDLGGGTFDVSILTIEDGIFE
Sbjct: 182 IAYGLDKK--GCAG-GEKNVLIFDLGGGTFDVSILTIEDGIFE 221
|
|
| UNIPROTKB|P08106 P08106 "Heat shock 70 kDa protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.3e-181, Sum P(2) = 2.3e-181
Identities = 176/220 (80%), Positives = 189/220 (85%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 660
+GE+NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVN FV+EFK K+
Sbjct: 193 AGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNRFVEEFKGKH 252
Query: 661 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 720
K+D NKRA+RRLRTACERA+RTLSSSTQASIEIDSLFEG+DFYTSITRARFEELNADL
Sbjct: 253 KRDNAGNKRAVRRLRTACERARRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADL 312
Query: 721 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXX 780
FRGT+EPVEK+LRDAK+DK QI +IVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDE
Sbjct: 313 FRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAV 372
Query: 781 XXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGV 820
IL GDKSE VQD GIETAGGV
Sbjct: 373 AYGAAVQAAILMGDKSENVQDLLLLDVTPLSLGIETAGGV 412
|
|
| ZFIN|ZDB-GENE-040426-1221 hsc70 "heat shock cognate 70" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 922 (329.6 bits), Expect = 3.6e-174, Sum P(2) = 3.6e-174
Identities = 181/219 (82%), Positives = 191/219 (87%)
Query: 602 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 661
GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+K
Sbjct: 191 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFITEFKRKFK 250
Query: 662 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 721
KD+T NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG DFYTSITRARFEELNADLF
Sbjct: 251 KDITGNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGADFYTSITRARFEELNADLF 310
Query: 722 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXX 781
RGT+EPVEK+LRDAKMDKAQIHDIVLVGGSTRIPK+QKLLQDFFNG++LNKSINPDE
Sbjct: 311 RGTLEPVEKALRDAKMDKAQIHDIVLVGGSTRIPKIQKLLQDFFNGRDLNKSINPDEAVA 370
Query: 782 XXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGV 820
IL GD SE VQD GIETAGGV
Sbjct: 371 YGAAVQAAILTGDTSENVQDLLLLDVTPLSLGIETAGGV 409
|
|
Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 840 | |||
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 0.0 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 1e-170 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-151 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 1e-150 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-148 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 1e-135 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 1e-130 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-128 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 1e-123 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-115 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-108 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 8e-95 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 8e-94 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 2e-88 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 1e-87 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 3e-86 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 3e-80 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 2e-79 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 3e-79 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 9e-78 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 5e-77 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 6e-72 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 9e-72 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 2e-71 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-69 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 6e-69 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 7e-69 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 1e-66 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 1e-65 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 5e-65 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 5e-65 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 6e-64 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 5e-62 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 6e-61 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 2e-60 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 3e-60 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 2e-59 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 9e-59 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 3e-58 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 2e-57 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 2e-57 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 2e-56 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 7e-55 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 6e-53 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 5e-52 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 2e-51 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 8e-50 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 1e-49 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 3e-47 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 3e-47 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 3e-43 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 2e-41 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 3e-41 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 2e-38 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 2e-36 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 4e-35 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 6e-34 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 5e-25 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 7e-19 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 5e-10 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 9e-07 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 4e-06 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 4e-06 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 4e-06 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 3e-05 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 3e-05 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 8e-05 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 9e-05 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 2e-04 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 3e-04 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 4e-04 | |
| cd07809 | 487 | cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup | 4e-04 | |
| cd11736 | 468 | cd11736, HSPA12B_like_NBD, Nucleotide-binding doma | 5e-04 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 5e-04 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 0.002 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 0.002 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 615 bits (1587), Expect = 0.0
Identities = 283/473 (59%), Positives = 329/473 (69%), Gaps = 81/473 (17%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
GV+++ VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA NP NT+FDAKRLIGRKF
Sbjct: 19 GVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKF 78
Query: 409 EDATVQADMKHWPFEVVSDG-GKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+D+ VQ+DMKHWPF+V + G KP I+V Y+GE KTF PEE+SSMVL KMKE AE
Sbjct: 79 DDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAE----- 133
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
AYLGK V +AV+TVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAAIAYG
Sbjct: 134 --------AYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSI 587
LDKK G GE+NVLIFDLGGGTFDVS+LTIEDGIFE + G T
Sbjct: 186 LDKK-----GDGEKNVLIFDLGGGTFDVSLLTIEDGIFE--------VKATAGDT----- 227
Query: 588 LTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 647
LGG FD ++ F V +DF +
Sbjct: 228 ----------------------HLGGEDFDNRLVE-----FCV-----------QDFKRK 249
Query: 648 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 707
+ +R ++ T +RA R L ++ TQA+IEIDSLFEG+D+ +
Sbjct: 250 NRGKDLSSNQRALRRLRTQCERAKRTLSSS-----------TQATIEIDSLFEGIDYNVT 298
Query: 708 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 767
I+RARFEEL D FR T++PVEK L+DA MDK +H++VLVGGSTRIPKVQ L++DFFNG
Sbjct: 299 ISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNG 358
Query: 768 KELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
KE KSINPDEAVAYGAAVQAAIL G++S +VQDLLLLDVTPLSLG+ETAGGV
Sbjct: 359 KEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGV 411
|
Length = 653 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 601 bits (1552), Expect = 0.0
Identities = 247/480 (51%), Positives = 304/480 (63%), Gaps = 90/480 (18%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T++ V + G E+IAND+GNRTTPS VAFT ERL+G AAK Q NP NT+F KRL
Sbjct: 9 TNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPKNTVFSVKRL 68
Query: 404 IGRKFEDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGRKF D VQ D+KH P++VV G ++V Y GE TF PE++S+MVL K+KETAE
Sbjct: 69 IGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE--TFTPEQISAMVLQKLKETAE 126
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
AYLG+ V++AVITVPAYFND+QRQATKD+G IAGLNVLRIINEPTAA
Sbjct: 127 -------------AYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAA 173
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGT 582
A+AYGLDKK ERNVL+FDLGGGTFDVSIL I DG+FE VL G T
Sbjct: 174 ALAYGLDKK------DKERNVLVFDLGGGTFDVSILEIGDGVFE------VL--ATNGDT 219
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
LGG FD ++
Sbjct: 220 H---------------------------LGGEDFDNRLV--------------------- 231
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFE- 700
+ V F K+KY DL+ + RAL+RLR A E+AK LSS T+ ++ +
Sbjct: 232 ---DHFVEEF----KKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMAD 284
Query: 701 GVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 760
G D ++TRA+FEEL ADLF T+EPVEK+L+DAK+ K++I ++VLVGGSTRIP VQ+L
Sbjct: 285 GKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQEL 344
Query: 761 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
+++FF GKE +K +NPDEAVA GAAVQA +L G +V+D+LLLDVTPLSLGIET GGV
Sbjct: 345 VKEFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGT--FDVKDVLLLDVTPLSLGIETLGGV 401
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 549 bits (1418), Expect = 0.0
Identities = 241/444 (54%), Positives = 296/444 (66%), Gaps = 88/444 (19%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
GVF++G+VEIIANDQGNR TPSYVAFTD ERLIGDAAKNQ NP NTIFD KRLIGRKF
Sbjct: 16 GVFKNGRVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNPENTIFDVKRLIGRKF 75
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
+D VQ D+K P++VV+ GKP I+V+ KGE KTF PEE+S+MVLTKMKE AE
Sbjct: 76 DDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEISAMVLTKMKEIAE------ 129
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
AYLGK V +AV+TVPAYFND+QRQATKD+GTIAGLNV+RIINEPTAAAIAYGL
Sbjct: 130 -------AYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGL 182
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGGGTFDV 585
DKK GE+N+L+FDLGGGTFDVS+LTI++G+FE +G+ + LGG FD
Sbjct: 183 DKK------GGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTH-----LGGEDFDQ 231
Query: 586 SILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFD 645
++ E+F I+ +F+ K D
Sbjct: 232 RVM---EHF----------------------------IK--LFKKKH----------GKD 248
Query: 646 NRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFY 705
+Q+ +R+ +K KRA LSS Q IEI+SLF+G DF
Sbjct: 249 ISKDKRALQKLRREVEK----AKRA--------------LSSQHQTRIEIESLFDGEDFS 290
Query: 706 TSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 765
++TRA+FEELN DLF+ T++PV+K L DA + K+ I +IVLVGGSTRIPKVQ+LL++FF
Sbjct: 291 ETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFF 350
Query: 766 NGKELNKSINPDEAVAYGAAVQAA 789
NGKE ++ INPDEAVAYGAAVQA
Sbjct: 351 NGKEPSRGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 506 bits (1307), Expect = e-170
Identities = 214/480 (44%), Positives = 282/480 (58%), Gaps = 106/480 (22%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V + G+ ++I N +G RTTPS VAFT ERL+G AK Q NP NTIF KRL+GR+
Sbjct: 18 VMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRD 77
Query: 409 EDATVQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
E+ VQ D+K P+++V D G ++++ K + P+E+S+M+L K+K+ AE YLG+
Sbjct: 78 EE--VQKDIKLVPYKIVKADNGDAWVEID----GKKYTPQEISAMILQKLKKDAEDYLGE 131
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
V+ AVIT VPAYFND+QRQATKD+G IAGL VLRIINEPTAAA+AYG
Sbjct: 132 KVTEAVIT-------------VPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 178
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSI 587
LDKK G+ +L++DLGGGTFDVSIL I DG+FE VL G T
Sbjct: 179 LDKK-------GDEKILVYDLGGGTFDVSILEIGDGVFE------VL--STNGDTH---- 219
Query: 588 LTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 647
LGG FD R
Sbjct: 220 -----------------------LGGDDFD----------------------------QR 228
Query: 648 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSL-FEGVD--- 703
++++ EFK++ DL +K AL+RL+ A E+AK LSS+ Q I +L F D
Sbjct: 229 IIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEI---NLPFITADASG 285
Query: 704 ---FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 760
+TRA+FEEL DL T+EP +++L+DA + + I +++LVGGSTR+P VQ+L
Sbjct: 286 PKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQEL 345
Query: 761 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
+++FF GKE NK +NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGV
Sbjct: 346 VKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGV 400
|
Length = 627 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 446 bits (1150), Expect = e-151
Identities = 178/193 (92%), Positives = 188/193 (97%)
Query: 600 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK 659
G GERNVLIFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGEDFDNR+VNHFVQEFKRK
Sbjct: 184 GGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRK 243
Query: 660 YKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 719
+KKD++ NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG+DFYTSITRARFEEL AD
Sbjct: 244 HKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELCAD 303
Query: 720 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 779
LFRGT+EPVEK LRDAK+DK+QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA
Sbjct: 304 LFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 363
Query: 780 VAYGAAVQAAILH 792
VAYGAAVQAAIL
Sbjct: 364 VAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 454 bits (1169), Expect = e-150
Identities = 213/476 (44%), Positives = 277/476 (58%), Gaps = 98/476 (20%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V + G+ +I N +G RTTPS VAFT ERL+G AK Q NP NTI+ KR +GR+F
Sbjct: 16 VMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF 75
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
++ V + K P++VV DGG ++KV+ K + P+E+S+M+L K+K+ AEAYLG+
Sbjct: 76 DE--VTEEAKRVPYKVVGDGGDVRVKVD----GKEYTPQEISAMILQKLKKDAEAYLGEK 129
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
V+ AVIT VPAYFND+QRQATKD+G IAGL VLRIINEPTAAA+AYGL
Sbjct: 130 VTEAVIT-------------VPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 176
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
DK + +L+FDLGGGTFDVSIL I DG+FE + G T
Sbjct: 177 DK------SKKDEKILVFDLGGGTFDVSILEIGDGVFE--------VLSTAGDTH----- 217
Query: 589 TIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 648
LGG FD R+
Sbjct: 218 ----------------------LGGDDFD----------------------------QRI 227
Query: 649 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----F 704
++ EFK++ DL+ +K AL+RL+ A E+AK LSS I + +
Sbjct: 228 IDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHL 287
Query: 705 YTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF 764
++TRA+FEEL ADL T EPV ++L+DA + + I +++LVGGSTRIP VQ+L++DF
Sbjct: 288 EMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDF 347
Query: 765 FNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
F GKE NKS+NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGV
Sbjct: 348 F-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGV 398
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 441 bits (1137), Expect = e-148
Identities = 187/239 (78%), Positives = 199/239 (83%), Gaps = 26/239 (10%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRLIGRKF
Sbjct: 14 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRKF 73
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
D VQ+DMKHWPF+VV+ GGKP I VEYKGE KTF+PEE+SSMVLTKMKE AE
Sbjct: 74 SDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVLTKMKEIAE------ 127
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
AYLGKTV+NAVITVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAAIAYGL
Sbjct: 128 -------AYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 180
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGGGTFD 584
DKK G GERNVLIFDLGGGTFDVS+LTIEDGIFE +G+ + LGG FD
Sbjct: 181 DKK-----GGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTH-----LGGEDFD 229
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 412 bits (1062), Expect = e-135
Identities = 216/468 (46%), Positives = 271/468 (57%), Gaps = 111/468 (23%)
Query: 354 GKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412
G ++I N +G R TPS VAF+ + E L+G AAK Q NP NTIF KR IGR
Sbjct: 26 GLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG----- 80
Query: 413 VQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNA 472
KI VE G K + PEE+S+M+LTK+KE AEAYLG+ V++A
Sbjct: 81 ---------------SNGLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDA 123
Query: 473 VITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKV 532
VIT VPAYFND+QRQATKD+ IAGLNVLR+INEPTAAA+AYGLDK
Sbjct: 124 VIT-------------VPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG- 169
Query: 533 GSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEE 592
E+ VL++DLGGGTFDVS+L I DG+FE VL GG
Sbjct: 170 ------KEKTVLVYDLGGGTFDVSLLEIGDGVFE------VLA--TGGDNH--------- 206
Query: 593 YFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652
LGG FD +++ + +V F
Sbjct: 207 ------------------LGGDDFDNALI------------------------DYLVMEF 224
Query: 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRAR 712
K K DL ++K AL+RLR A E+AK LSS+TQ SI + S+ +D +TRA+
Sbjct: 225 ----KGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAK 280
Query: 713 FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 772
FEEL DL T+EPVE++L+DA ++K+ I ++LVGGSTRIP VQ+L+++FF GKE K
Sbjct: 281 FEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEK 339
Query: 773 SINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
SINPDEAVA GAA+QAA+L G+ D+LLLDV PLSLGIET GGV
Sbjct: 340 SINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGV 383
|
Length = 579 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 393 bits (1012), Expect = e-130
Identities = 196/443 (44%), Positives = 255/443 (57%), Gaps = 100/443 (22%)
Query: 358 IIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQAD 416
+I N +G RTTPS VAFT D ERL+G AK Q NP NT++ KRLIGR+F+D VQ D
Sbjct: 26 VIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPENTLYATKRLIGRRFDDPEVQKD 85
Query: 417 MKHWPFEVV--SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVI 474
+K+ P+++V S+G VE G K + P ++ + VL KMKETAEAYLGK V NAVI
Sbjct: 86 IKNVPYKIVKASNG---DAWVEAHG--KKYSPSQIGAFVLMKMKETAEAYLGKPVKNAVI 140
Query: 475 TAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 534
T VPAYFNDSQRQATKD+G IAGLNVLR+INEPTAAA+AYGLDKK
Sbjct: 141 T-------------VPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKDDK 187
Query: 535 TAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYF 594
+ ++DLGGGTFD+SIL I+ G+FE + G TF
Sbjct: 188 V-------IAVYDLGGGTFDISILEIQKGVFE--------VKSTNGDTF----------- 221
Query: 595 PLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 654
LGG FD N ++ H V+
Sbjct: 222 ----------------LGGEDFD----------------------------NALLRHLVK 237
Query: 655 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSI 708
EFK++ DLT + AL+RLR A E+AK LSSS Q +I+ + D +
Sbjct: 238 EFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQT--DINLPYITADASGPKHLNMKL 295
Query: 709 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK 768
TRA+FE L DL + T+EP +K+L+DA + K+ I +++LVGG TR+PKVQ+ +++ F GK
Sbjct: 296 TRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIF-GK 354
Query: 769 ELNKSINPDEAVAYGAAVQAAIL 791
E +K +NPDEAVA GAA+Q +L
Sbjct: 355 EPSKGVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 389 bits (1003), Expect = e-128
Identities = 180/444 (40%), Positives = 242/444 (54%), Gaps = 79/444 (17%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V + G ++++AN+ NR TPS V+F + +RLIG+AAKNQ N NT+ + KRLIGRKF
Sbjct: 15 AVARKGGIDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNFKNTVRNFKRLIGRKF 74
Query: 409 EDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+D VQ ++K PF+VV GK IKV Y GE K F PE+V +M+LTK+KE AE
Sbjct: 75 DDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLLTKLKEIAE----- 129
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
L V++ VI+VP+YF D+QR+A D+ IAGLN LR++NE TA A+AYG
Sbjct: 130 --------KALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYG 181
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSI 587
+ K DL E RNV D+G + VSI
Sbjct: 182 IYKT---------------DL----------------PEEEKPRNVAFVDIGHSSTQVSI 210
Query: 588 LTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 647
F+ L + STA D +LGG DFD
Sbjct: 211 --------------------------VAFNKGKLKV-------LSTAFDRNLGGRDFDEA 237
Query: 648 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 707
+ HF +EFK KYK D+ +N +A RL ACE+ K+ LS++T+A + I+ L E D
Sbjct: 238 LFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLMEDKDVSGK 297
Query: 708 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 767
I R FEEL A L EP+EK+L +A + K IH + +VGGSTRIP V++L+ F G
Sbjct: 298 IKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF-G 356
Query: 768 KELNKSINPDEAVAYGAAVQAAIL 791
KEL+ ++N DEAVA G A+Q A+L
Sbjct: 357 KELSTTLNADEAVARGCALQCAML 380
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 386 bits (994), Expect = e-123
Identities = 149/207 (71%), Positives = 183/207 (88%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI+RNTTIPTK++Q FTTY+DNQPGVLIQV+EGERAMTKDNNLLGKF L IPPAPR
Sbjct: 412 MTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPR 471
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGILNV+A +KSTGK NKITITND+GRLSK DI+RMVN+AEKYKAED
Sbjct: 472 GVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAED 531
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
E + + AKN LE+YC++MK+T++DEK+K K+SD+++ I ++ ++WL+ NQLAEK
Sbjct: 532 EANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEK 591
Query: 181 EEFEHKQKELEAICNPIITKLYQGSGG 207
EEFEHKQKE+E++CNPI+TK+YQ +GG
Sbjct: 592 EEFEHKQKEVESVCNPIMTKMYQAAGG 618
|
Length = 653 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 354 bits (909), Expect = e-115
Identities = 186/449 (41%), Positives = 253/449 (56%), Gaps = 88/449 (19%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T++ V II N +G RTTPS V+FT T L+G+AAK Q A++P NT F KRL
Sbjct: 12 TNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPENTFFATKRL 71
Query: 404 IGRKFEDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGR+F+D VQ MK +++V G I K + P +++S VL K+K+TAE
Sbjct: 72 IGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTN----GKKYSPSQIASFVLKKLKKTAE 127
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
AYLGK V AVIT VPAYFNDSQRQATKD+GT+AGL VLRIINEPTAA
Sbjct: 128 AYLGKRVDEAVIT-------------VPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAA 174
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGT 582
A+AYG+DK+ +N+ ++DLGGGTFD+SIL IEDG+FE + G T
Sbjct: 175 ALAYGIDKR------KENKNIAVYDLGGGTFDISILNIEDGVFE--------VKATNGDT 220
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
LGG FD +I+
Sbjct: 221 M---------------------------LGGEDFDNAIV--------------------- 232
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 702
++ F + KYK DLT NK+A++R++ A E+AK LSSS ++ IE+ L
Sbjct: 233 ---QYIIKEFKR----KYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPK 285
Query: 703 DFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 762
+ITR FE+L + + T+ P ++ L+DA + K I +++LVGG TR+P +Q ++Q
Sbjct: 286 HLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQ 345
Query: 763 DFFNGKELNKSINPDEAVAYGAAVQAAIL 791
+ F GK+ +KS+NPDEAVA GAA+Q +IL
Sbjct: 346 EIF-GKKPSKSVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 334 bits (859), Expect = e-108
Identities = 156/447 (34%), Positives = 218/447 (48%), Gaps = 116/447 (25%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTER-LIGDAAKNQVAMNPNNTIFDAKR 402
T++L V+Q GK +I N G TPS V+ + L+G AA+ ++ +P+ T KR
Sbjct: 8 TNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDLTAASFKR 67
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
+G +D +Y+ + F EE+SS+VL +KE AE
Sbjct: 68 FMG--------------------TD-------KKYRLGKREFRAEELSSLVLRSLKEDAE 100
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
AYLG+ V+ AVI+ VPAYFND QR+ATK +G +AGL V R+INEPTAA
Sbjct: 101 AYLGEPVTEAVIS-------------VPAYFNDEQRKATKRAGELAGLKVERLINEPTAA 147
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGT 582
A+AYGL K E L+FDLGGGT
Sbjct: 148 ALAYGLHDK------------------------------------DEETKFLVFDLGGGT 171
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
FDVS+L E F DG+ EV+++AGD +LGGE
Sbjct: 172 FDVSVL---ELF------------------------------DGVMEVRASAGDNYLGGE 198
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 702
DF + F++ K + L RL A ERAKR LS +A + + EG
Sbjct: 199 DFTRALAEAFLK--KHGLDFEKLDPSE-LARLLRAAERAKRALSDQEEAEMSVR--IEGE 253
Query: 703 DFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 762
+ ++TR FEE+ L +P+E++LRDA++ + I +I+LVGG+TR+P V+KL+
Sbjct: 254 ELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVS 313
Query: 763 DFFNGKELNKSINPDEAVAYGAAVQAA 789
F G+ +NPDE VA GAA+QA
Sbjct: 314 RLF-GRFPLVHLNPDEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 301 bits (774), Expect = 8e-95
Identities = 138/438 (31%), Positives = 207/438 (47%), Gaps = 72/438 (16%)
Query: 355 KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414
EI+ N++ R TPS VAF ERL G A + A P K L+G+ +D +V
Sbjct: 20 PFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQVYLHLKDLLGKPADDPSVS 79
Query: 415 ADMKHWPF-EVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAV 473
P +V D + + + + EE+ +M+L K+ AE +
Sbjct: 80 LYQSRHPLPYLVVDESRGTVAFKISDGE-EYSVEELVAMILNYAKKLAEEHAK------- 131
Query: 474 ITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 533
V + VITVP YF +QRQA D+ +AGLNVL ++N+ TAAA+ Y LD++
Sbjct: 132 -----EAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYALDRR-- 184
Query: 534 STAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEY 593
FE + + VL +D+G G+ +++
Sbjct: 185 -------------------------------FENNKPQYVLFYDMGAGSTTATVVEFS-- 211
Query: 594 FPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653
+ + EV D LGG +FD R+ +H
Sbjct: 212 ---------------------PVEEKEKSKTVPQIEVLGVGWDRTLGGREFDLRLADHLA 250
Query: 654 QEFKRKYK--KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRA 711
+EF+ K+K D+ TN RA+ +L RAK LS++++A + I+SL++ +DF T ITRA
Sbjct: 251 KEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDDIDFKTKITRA 310
Query: 712 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN 771
FEEL ADLF + P++K+L A + I + L+GG+TR+PKVQ+ L + K+L
Sbjct: 311 EFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEELSEAVGKKKLG 370
Query: 772 KSINPDEAVAYGAAVQAA 789
K +N DEA A GAA AA
Sbjct: 371 KHLNADEAAAMGAAYYAA 388
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 308 bits (789), Expect = 8e-94
Identities = 187/482 (38%), Positives = 264/482 (54%), Gaps = 96/482 (19%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T + K ++ N +G RTTPS VAF +E+L+G AAK Q NP +T + KRL
Sbjct: 37 TYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRL 96
Query: 404 IGRKFEDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGR+FED +Q D+K+ P+++V + G ++ G K + P ++ + VL KMKETAE
Sbjct: 97 IGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ---DGNGKQYSPSQIGAFVLEKMKETAE 153
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
+LG VSNAV+T PAYFND+QRQATKD+GTIAGLNV+R++NEPTAA
Sbjct: 154 NFLGHKVSNAVVTC-------------PAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAA 200
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGT 582
A+AYG+DK S + ++DLGGGTFD+S+L I G+FE + G T
Sbjct: 201 ALAYGMDKTKDSL-------IAVYDLGGGTFDISVLEIAGGVFE--------VKATNGDT 245
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
LGG FD L + D I E
Sbjct: 246 ---------------------------HLGGEDFD---LALSDYILE------------- 262
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 702
EF++ DL+ + AL+R+R A E+AK LSS+ + + + +
Sbjct: 263 ------------EFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANA 310
Query: 703 D----FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 758
D I+R++FE + L ++ P ++ ++DA ++ +I+D+VLVGG TR+PKV
Sbjct: 311 DGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVV 370
Query: 759 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAG 818
+ ++ FF K+ + +NPDEAVA GAA +L GD V+ L+LLDVTPLSLGIET G
Sbjct: 371 EEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLG 425
Query: 819 GV 820
GV
Sbjct: 426 GV 427
|
Length = 657 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 284 bits (729), Expect = 2e-88
Identities = 124/242 (51%), Positives = 158/242 (65%), Gaps = 33/242 (13%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V + G+ +I N +G+RTTPS VAFT ERL+G AK Q NP NTIF KR +GRKF
Sbjct: 18 VMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPENTIFSIKRFMGRKF 77
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
++ + + + VV +GG K++++ G K + P+E+S+M+L K+KE AEAYLG+
Sbjct: 78 DEVEEERKVPYKV--VVDEGGNYKVEIDSNG--KDYTPQEISAMILQKLKEDAEAYLGEK 133
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
V+ AVIT VPAYFNDSQRQATKD+G IAGL VLRIINEPTAAA+AYGL
Sbjct: 134 VTEAVIT-------------VPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 180
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGGGTFDV 585
DKK G +L++DLGGGTFDVSIL I DG+FE +G+ + LGG FD
Sbjct: 181 DKK-------GNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTH-----LGGDDFDQ 228
Query: 586 SI 587
I
Sbjct: 229 RI 230
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 289 bits (742), Expect = 1e-87
Identities = 112/204 (54%), Positives = 145/204 (71%), Gaps = 8/204 (3%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI RNTTIPTK++Q F+T +DNQ V IQVY+GER M DN LLG FEL IPPAPR
Sbjct: 402 MTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPR 461
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGIL V+A +K TGKE KITIT G LS ++IERMV DAE+Y AED
Sbjct: 462 GVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAAED 520
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDAN-QLAE 179
+K+K I AKN E Y ++++ ++++E DK+ +A++ K + I+WL + +
Sbjct: 521 KKRKERIEAKNEAEEYVYSLEKSLKEE--GDKLPEADKK----KVEEAIEWLKEELEGED 574
Query: 180 KEEFEHKQKELEAICNPIITKLYQ 203
KEE E K +EL+ + PI ++YQ
Sbjct: 575 KEEIEAKTEELQKVVQPIGERMYQ 598
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 278 bits (714), Expect = 3e-86
Identities = 94/190 (49%), Positives = 129/190 (67%), Gaps = 1/190 (0%)
Query: 600 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK 659
R +L+FDLGGGTFDVS++ +E G+FEV +T GD HLGG+DFDN + ++ ++FK K
Sbjct: 181 DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEK 240
Query: 660 YKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 719
DL + RALRRL+ A E+AK LSSS +A+I + L G D +TR FEEL
Sbjct: 241 GGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRP 300
Query: 720 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 779
L T++ VE+ L DA + I ++LVGGS+RIP V++LL++ F GK+ +SI+PDEA
Sbjct: 301 LLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELF-GKKPLRSIDPDEA 359
Query: 780 VAYGAAVQAA 789
VA GAA+ AA
Sbjct: 360 VALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 262 bits (673), Expect = 3e-80
Identities = 123/245 (50%), Positives = 155/245 (63%), Gaps = 32/245 (13%)
Query: 353 HGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDA 411
GK EII N +G+RTTPS V F E L+G+AAK Q NP NT+ D KRLIGRKF+D
Sbjct: 18 GGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPENTVGDFKRLIGRKFDDP 77
Query: 412 TVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSN 471
VQ+ K + D G P I V + K + PEEVS+++L K+KE AEAYLG+ V+
Sbjct: 78 LVQSAKKV----IGVDRGAPIIPVPVELGGKKYSPEEVSALILKKLKEDAEAYLGEPVTE 133
Query: 472 AVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKK 531
AVIT VPAYFND+QR+ATK++ IAGLNV+R+INEPTAAA+AYGLDKK
Sbjct: 134 AVIT-------------VPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKK 180
Query: 532 VGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE--GSGERNVLIFDLGGGTFDVSILT 589
R +L+FDLGGGTFDVS++ +E G+FE +G N LGG FD
Sbjct: 181 -----DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDN----HLGGDDFD---NA 228
Query: 590 IEEYF 594
+ +Y
Sbjct: 229 LADYL 233
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 268 bits (688), Expect = 2e-79
Identities = 100/209 (47%), Positives = 135/209 (64%), Gaps = 6/209 (2%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI+RNTTIPTK++Q F+T +DNQP V I V +GER M DN LG+F LT IPPAPR
Sbjct: 401 MTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPR 460
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGI++V+A +K TGKE ITIT G LS E+IERMV DAE ED
Sbjct: 461 GVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANAEED 519
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
+K+K ++ A+N +S + + T+++ L DK+ E+ +I ++ + L +K
Sbjct: 520 KKRKELVEARNQADSLIYQTEKTLKE--LGDKVPADEKEKIEAAIKELKEALKGE---DK 574
Query: 181 EEFEHKQKELEAICNPIITKLYQGSGGAP 209
E + K +EL + +YQ + A
Sbjct: 575 EAIKAKTEELTQASQKLGEAMYQQAQAAQ 603
|
Length = 627 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 268 bits (688), Expect = 3e-79
Identities = 121/224 (54%), Positives = 160/224 (71%), Gaps = 12/224 (5%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
E+ +L+FDLGGGTFDVSIL + DG+FEVK+TAG+ HLGG+DFDN +V+ V+ F+++
Sbjct: 185 EQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGI 244
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEEL 716
DL+ +K AL+RLR A E+AK LSS SI + F D +TRA+FEEL
Sbjct: 245 DLSQDKMALQRLREAAEKAKIELSSMLTTSINLP--FITADETGPKHLEMELTRAKFEEL 302
Query: 717 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 776
DL T+EP++++L+DA + I ++LVGGSTRIP VQ+ +Q FF GK+ ++S+NP
Sbjct: 303 TKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNP 362
Query: 777 DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
DEAVA GAA+QA +L G EV+DLLLLDVTPLSLGIET G V
Sbjct: 363 DEAVALGAAIQAGVLGG----EVKDLLLLDVTPLSLGIETLGEV 402
|
Length = 653 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 9e-78
Identities = 99/194 (51%), Positives = 138/194 (71%), Gaps = 5/194 (2%)
Query: 602 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 661
G +L++DLGGGTFDVSIL I DG+FEV +T GDTHLGG+DFD R+++ V+EFK++
Sbjct: 184 GNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEFKKEEG 243
Query: 662 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELN 717
DL +K AL+RL+ A E+AK LSS T+ I + + ++TRA+FEEL
Sbjct: 244 IDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEELT 303
Query: 718 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 777
DL T+EPV+++L+DAK+ + I +++LVGGSTRIP VQ+L+++ F GKE NK +NPD
Sbjct: 304 EDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELF-GKEPNKGVNPD 362
Query: 778 EAVAYGAAVQAAIL 791
E VA GAA+Q +L
Sbjct: 363 EVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 261 bits (670), Expect = 5e-77
Identities = 122/219 (55%), Positives = 162/219 (73%), Gaps = 9/219 (4%)
Query: 606 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 665
+L+FDLGGGTFDVSIL + DG+FEV ST+GDTHLGG+DFD ++VN ++EFK+K DL+
Sbjct: 189 ILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLS 248
Query: 666 TNKRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-VDFYTSITRARFEELNADLF 721
+++AL+RL A E+AK LS+ TQ I I + G ++TRA+FEEL +DL
Sbjct: 249 KDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLI 308
Query: 722 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 781
PVE +L+DAK+DK+ I ++VLVGGSTRIP +Q+L++ GK+ N+S+NPDE VA
Sbjct: 309 NRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVA 367
Query: 782 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
GAAVQA +L G EV+D+LLLDVTPLSLG+ET GGV
Sbjct: 368 IGAAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGV 402
|
Length = 621 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 6e-72
Identities = 117/223 (52%), Positives = 157/223 (70%), Gaps = 13/223 (5%)
Query: 604 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 663
+ + ++DLGGGTFD+SIL I G+FEVK+T G+T LGGEDFD R++N+ + EFK++ D
Sbjct: 226 KTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGID 285
Query: 664 LTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEELN 717
L +K AL+RLR A E AK LSS TQ EI+ F D ++RA+ EEL
Sbjct: 286 LKKDKLALQRLREAAETAKIELSSKTQ--TEINLPFITADQSGPKHLQIKLSRAKLEELT 343
Query: 718 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 777
DL + T+EP EK ++DA + K +++D++LVGG TR+PKV + ++ F GKE +K +NPD
Sbjct: 344 HDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPD 402
Query: 778 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
EAVA GAA+QA +L G E++DLLLLDVTPLSLGIET GGV
Sbjct: 403 EAVAMGAAIQAGVLKG----EIKDLLLLDVTPLSLGIETLGGV 441
|
Length = 663 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 9e-72
Identities = 108/224 (48%), Positives = 150/224 (66%), Gaps = 9/224 (4%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 660
S + VL+FDLGGGTFDVS+L + +G+FEVK+T+GDT LGG DFD R+V+ ++F K
Sbjct: 184 SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKE 243
Query: 661 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEEL 716
DL +++AL+RL A E+AK LS + I + + D T + R +FE L
Sbjct: 244 GIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESL 303
Query: 717 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 776
DL + PV+++L+DA + I ++VLVGGSTR+P VQ+L++ +E N+++NP
Sbjct: 304 CGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNP 362
Query: 777 DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
DE VA GAA+QA IL G E++DLLLLDVTPLSLG+ET GGV
Sbjct: 363 DEVVAVGAAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGV 402
|
Length = 668 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 2e-71
Identities = 100/203 (49%), Positives = 135/203 (66%), Gaps = 6/203 (2%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI+RNTTIPTK++Q F+T +DNQP V I V +GER M DN LG+FELT IPPAPR
Sbjct: 399 MTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPR 458
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGIL+V+A +K TGKE ITIT G LS+E+IERMV +AE ED
Sbjct: 459 GVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANAEED 517
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
+K+K I A+N+ +S + + T+++ DK+ E+ +I ++ + L +
Sbjct: 518 KKRKEEIEARNNADSLAYQAEKTLKE--AGDKLPAEEKEKIEKAVAELKEALKGE---DV 572
Query: 181 EEFEHKQKELEAICNPIITKLYQ 203
EE + K +EL+ + +YQ
Sbjct: 573 EEIKAKTEELQQALQKLAEAMYQ 595
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 1e-69
Identities = 119/219 (54%), Positives = 154/219 (70%), Gaps = 9/219 (4%)
Query: 606 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 665
+L+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+DFD R+V+ FK+ DL
Sbjct: 226 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLL 285
Query: 666 TNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELNADLF 721
+K+AL+RL A E+AK LSS TQ SI + + D T++TRA+FEEL +DL
Sbjct: 286 KDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLL 345
Query: 722 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 781
PVE +LRDAK+ I +++LVGGSTRIP VQ+L++ GK+ N ++NPDE VA
Sbjct: 346 DRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKK-LTGKDPNVTVNPDEVVA 404
Query: 782 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
GAAVQA +L G EV D++LLDVTPLSLG+ET GGV
Sbjct: 405 LGAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGV 439
|
Length = 673 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 6e-69
Identities = 124/256 (48%), Positives = 160/256 (62%), Gaps = 34/256 (13%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKR 402
T+++ V + GK +I N +G RTTPS VA+T + L+G AK Q +NP NT + KR
Sbjct: 12 TNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKR 71
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGRKF + + + K ++V +D IK+E K F PEE+S+ VL K+ E A
Sbjct: 72 FIGRKFSE--ISEEAKQVSYKVKTDS-NGNIKIECPALNKDFSPEEISAQVLRKLVEDA- 127
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
+ YLG+TV+ AVITVPAYFNDSQRQATKD+G IAGL VLRIINEPTAA
Sbjct: 128 ------------SKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 175
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLG 579
++AYGLDKK T +L+FDLGGGTFDVSIL + DG+FE SG+ + LG
Sbjct: 176 SLAYGLDKKNNET-------ILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTH-----LG 223
Query: 580 GGTFDVSILT--IEEY 593
G FD I+ I+E+
Sbjct: 224 GDDFDKKIVNWLIKEF 239
|
Length = 621 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 7e-69
Identities = 110/248 (44%), Positives = 155/248 (62%), Gaps = 32/248 (12%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKR 402
T+++ V + GK +IAN +G RTTPS V FT D E L+G A+ Q+ +NP NT ++ KR
Sbjct: 12 TNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKR 71
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGR++++ + K P+ + + + ++++ + F PEE+S+M+L K+ + A
Sbjct: 72 FIGRRYDELD--PESKRVPYTIRRNE-QGNVRIKCPRLEREFAPEELSAMILRKLADDAS 128
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
YLG+ V+ AVIT VPAYFNDSQRQAT+D+G IAGL V RI+NEPTAA
Sbjct: 129 RYLGEPVTGAVIT-------------VPAYFNDSQRQATRDAGRIAGLEVERILNEPTAA 175
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLG 579
A+AYGLD+ S + VL+FDLGGGTFDVS+L + +G+FE SG+ LG
Sbjct: 176 ALAYGLDR-------SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQ-----LG 223
Query: 580 GGTFDVSI 587
G FD I
Sbjct: 224 GNDFDKRI 231
|
Length = 668 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 233 bits (596), Expect = 1e-66
Identities = 89/218 (40%), Positives = 137/218 (62%), Gaps = 13/218 (5%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
E + ++DLGGGTFD+SIL + G+FEV +T GD+ LGG+DFD+ + + ++ +
Sbjct: 200 EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILE--QAGLSP 257
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
L + R L A AK LS + + + +L++G ITR +F L A L +
Sbjct: 258 RLDPEDQ--RLLLDAARAAKEALSDADSVEVSV-ALWQG-----EITREQFNALIAPLVK 309
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 782
T+ ++LRDA ++ ++ ++V+VGGSTR+P V++ + +FF G+ SI+PD+ VA
Sbjct: 310 RTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAI 368
Query: 783 GAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
GAA+QA IL G+K + D+LLLDV PLSLG+ET GG+
Sbjct: 369 GAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGL 404
|
Length = 616 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 1e-65
Identities = 115/241 (47%), Positives = 151/241 (62%), Gaps = 30/241 (12%)
Query: 357 EIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQA 415
++I N +G RTTPS VAFT+ +RL+G AK Q NP NT+F KRLIGR++++ +
Sbjct: 64 KVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDATKK 123
Query: 416 DMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVI 474
+ K P+++V + G I+ + K + P ++ + VL KMKETAE+YLG+ V AVI
Sbjct: 124 EQKILPYKIVRASNGDAWIE----AQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVI 179
Query: 475 TAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 534
T VPAYFNDSQRQATKD+G IAGL+VLRIINEPTAAA+A+G+DK G
Sbjct: 180 T-------------VPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGK 226
Query: 535 TAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILT--IEE 592
T + ++DLGGGTFD+SIL I G+FE LGG FD IL I E
Sbjct: 227 T-------IAVYDLGGGTFDISILEILGGVFEVKATNGNT--SLGGEDFDQRILNYLIAE 277
Query: 593 Y 593
+
Sbjct: 278 F 278
|
Length = 663 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 5e-65
Identities = 115/248 (46%), Positives = 155/248 (62%), Gaps = 31/248 (12%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKR 402
T++ V + GK +I N +G RTTPS V F + +RL+G AK Q N NT++ KR
Sbjct: 12 TNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKR 71
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
IGR+++D + + P+ V G + V+ +G + + P+E+S+M+L K+K+ AE
Sbjct: 72 FIGRRWDDT--EEERSRVPYTCVK-GRDDTVNVQIRG--RNYTPQEISAMILQKLKQDAE 126
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
AYLG+ V+ AVIT VPAYF D+QRQATKD+GTIAGL VLRIINEPTAA
Sbjct: 127 AYLGEPVTQAVIT-------------VPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAA 173
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE--GSGERNVLIFDLGG 580
A+AYGLDK+ E+ +L+FDLGGGTFDVSIL + DG+FE + N LGG
Sbjct: 174 ALAYGLDKQ------DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNN----HLGG 223
Query: 581 GTFDVSIL 588
FD I+
Sbjct: 224 DDFDNCIV 231
|
Length = 653 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 222 bits (566), Expect = 5e-65
Identities = 142/445 (31%), Positives = 222/445 (49%), Gaps = 79/445 (17%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V + G +E IAN+ +R TP+ ++ R IG+AAK+Q+ N NTI K+L GR F
Sbjct: 15 AVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSF 74
Query: 409 EDATVQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+D VQ + P+E+ G +KV Y E + F E+V+ M+L K+KET+E L K
Sbjct: 75 DDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKK 134
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
V++ VI+ +P++F D++R++ + +AGLN LR++NE TA A+AYG
Sbjct: 135 PVADCVIS-------------IPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYG 181
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSI 587
+ K+ RNV+ D+G + VS+ G+ VL TFD
Sbjct: 182 IYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFN------KGKLKVL-----ATTFD--- 227
Query: 588 LTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 647
P LGG FD ++
Sbjct: 228 -------PY--------------LGGRNFDEAL--------------------------- 239
Query: 648 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYT 706
V++F EFK KYK ++ N RAL RL CE+ K+ +S+ ++ + I+ +D +
Sbjct: 240 -VDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSS 298
Query: 707 SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 766
+ RA+FE+L A L P++ + A + + I+ I +VGG+TRIP V++ + FF
Sbjct: 299 KMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL 358
Query: 767 GKELNKSINPDEAVAYGAAVQAAIL 791
K+++ ++N DEAVA G A+Q AIL
Sbjct: 359 -KDISTTLNADEAVARGCALQCAIL 382
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 219 bits (558), Expect = 6e-64
Identities = 143/444 (32%), Positives = 216/444 (48%), Gaps = 79/444 (17%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFE 409
V + G +E IAN+ +R TP+ ++F R IG AAK+QV N NT+ KR GR F
Sbjct: 16 VARAGGIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNAKNTVQGFKRFHGRAFS 75
Query: 410 DATVQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
D VQA+ +++V G IKV Y E + F E+V++M+LTK+KETAE
Sbjct: 76 DPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAMLLTKLKETAE------ 129
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
+ L K V + V++VP ++ D++R++ D+ IAGLN LR++NE TA A+AYG+
Sbjct: 130 -------SALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGI 182
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
K+ RNV+ D+G + VS+ G+ VL FD +
Sbjct: 183 YKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFN------KGKLKVL-----ATAFDTT-- 229
Query: 589 TIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 648
LGG FD E N
Sbjct: 230 ----------------------LGGRKFD------------------------EVLVNYF 243
Query: 649 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTS 707
F +++K D+ + RAL RL CE+ K+ +S+ ++ + I+ +D +
Sbjct: 244 CEEFGKKYKL----DIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGT 299
Query: 708 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 767
+ R +F E+ DL P+ L AK+ K I+ + +VGG+TRIP V++ + FF G
Sbjct: 300 MNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKFF-G 358
Query: 768 KELNKSINPDEAVAYGAAVQAAIL 791
KE++ ++N DEAVA G A+Q AIL
Sbjct: 359 KEVSTTLNADEAVARGCALQCAIL 382
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 5e-62
Identities = 95/221 (42%), Positives = 130/221 (58%), Gaps = 15/221 (6%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD+ + K+
Sbjct: 180 EGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI-------LKQ 232
Query: 663 ---DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 719
N R L A AK L + S+E+D +G DF +TR FE L
Sbjct: 233 LGISADLNPEDQRLLLQAARAAKEAL--TDAESVEVDFTLDGKDFKGKLTRDEFEALIQP 290
Query: 720 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 779
L + T+ ++LRDA + +I +VLVGGSTR+P V++ + + F G+E I+PD+
Sbjct: 291 LVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQV 349
Query: 780 VAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
VA GAA+QA +L G++ DLLLLDVTPLSLGIET GG+
Sbjct: 350 VALGAAIQADLLAGNRIGN--DLLLLDVTPLSLGIETMGGL 388
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 6e-61
Identities = 112/239 (46%), Positives = 143/239 (59%), Gaps = 32/239 (13%)
Query: 354 GKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412
GK I+ N +G RTTPS VA+T +RL+G AK Q +NP NT F KR IGRK +
Sbjct: 59 GKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116
Query: 413 VQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNA 472
V + K + VV D +K++ K F EE+S+ VL K+ + A
Sbjct: 117 VDEESKQVSYRVVRDENG-NVKLDCPAIGKQFAAEEISAQVLRKLVDDA----------- 164
Query: 473 VITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKV 532
+ +L V+ AVITVPAYFNDSQR ATKD+G IAGL VLRIINEPTAA++AYG +KK
Sbjct: 165 --SKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKS 222
Query: 533 GSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGGGTFDVSIL 588
T +L+FDLGGGTFDVS+L + DG+FE SG+ + LGG FD I+
Sbjct: 223 NET-------ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTH-----LGGDDFDKRIV 269
|
Length = 673 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (553), Expect = 2e-60
Identities = 98/205 (47%), Positives = 143/205 (69%), Gaps = 6/205 (2%)
Query: 2 TALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRG 61
T LI RNTTIPTK++Q F+T +DNQ V I+V++GER M DN LLG+F+L IPPAPRG
Sbjct: 443 TRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRG 502
Query: 62 VPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDE 121
VPQIEVTFD+DANGI+N++A++KSTGK+ +ITI + G LS E+IE+MV +AE+YK +DE
Sbjct: 503 VPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDE 561
Query: 122 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKE 181
K+K ++ AKN E+ ++++ + D LKDKISDA++ ++ K + L + + +
Sbjct: 562 KKKELVDAKNEAETLIYSVEKQLSD--LKDKISDADKDELKQKITKLRSTLSSEDV---D 616
Query: 182 EFEHKQKELEAICNPIITKLYQGSG 206
+ K K+L+ I + Y+
Sbjct: 617 SIKDKTKQLQEASWKISQQAYKQGN 641
|
Length = 663 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 3e-60
Identities = 98/244 (40%), Positives = 130/244 (53%), Gaps = 34/244 (13%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T++L GKV+I+ ++ G PS V + D +G A +P NTI KRL
Sbjct: 10 TNSLVASVLSGKVKILPDENGRVLLPSVVHYGDGGISVGHDALKLAISDPKNTISSVKRL 69
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
+G+ ED ++ + P +GG + T P EVS+ +L +KE AE
Sbjct: 70 MGKSIED--IKKSFPYLPILEGKNGGIILFHTQ----QGTVTPVEVSAEILKALKERAEK 123
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
LG + AVIT VPAYF+D+QRQATKD+ +AGLNVLR++NEPTAAA
Sbjct: 124 SLGGEIKGAVIT-------------VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAA 170
Query: 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGG 580
+AYGLDKK E ++DLGGGTFDVSIL + G+FE G+ LGG
Sbjct: 171 LAYGLDKKK-------EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSA-----LGG 218
Query: 581 GTFD 584
FD
Sbjct: 219 DDFD 222
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 2e-59
Identities = 114/435 (26%), Positives = 193/435 (44%), Gaps = 78/435 (17%)
Query: 356 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQA 415
++I+ N+ NR+TPS V F R +G+ KN+ N NT+ + KR+IG + +
Sbjct: 20 IDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQ 79
Query: 416 DMKH-WPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVI 474
+ KH V D K +V + GE F ++++M + K+K+T + +++ I
Sbjct: 80 ESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCI 139
Query: 475 TAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 534
VP ++ + QR D+ IAGLN +RI+N+ TAA ++YG+ K
Sbjct: 140 A-------------VPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLP 186
Query: 535 TAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYF 594
R V D+G ++ SI+ + G + + G D
Sbjct: 187 EGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLK-----------VLGTACDKH-------- 227
Query: 595 PLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 654
GG FD++I H E ++ ++
Sbjct: 228 ----------------FGGRDFDLAI---------------TEHFADEFKTKYKID--IR 254
Query: 655 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFE 714
E + Y + L TA E+ K+ LS++T A ++S+ VD + ++R E
Sbjct: 255 ENPKAYNRIL-----------TAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELE 303
Query: 715 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 774
EL L EPV K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++
Sbjct: 304 ELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTL 362
Query: 775 NPDEAVAYGAAVQAA 789
N DEA+A GAA A
Sbjct: 363 NQDEAIAKGAAFICA 377
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 9e-59
Identities = 97/203 (47%), Positives = 133/203 (65%), Gaps = 8/203 (3%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
T +I+RNTTIP K++Q F+T +D Q V I V++GER M DN LG+FEL IPPAPR
Sbjct: 384 RTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPR 443
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGILNVTA + TGKE ITI G LS E+IERMV DAE A D
Sbjct: 444 GVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALD 502
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
+K + ++ A+N ES ++++ +++ K+S+ E+ +I + D+ + L+ EK
Sbjct: 503 KKFRELVEARNEAESLIYSLEKALKEI---VKVSEEEKEKIEEAITDLEEALE----GEK 555
Query: 181 EEFEHKQKELEAICNPIITKLYQ 203
EE + K +EL+ + + K YQ
Sbjct: 556 EEIKAKIEELQEVTQKLAEKKYQ 578
|
Length = 579 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 3e-58
Identities = 85/188 (45%), Positives = 126/188 (67%)
Query: 602 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 661
G+ VL++ LGG + DV+IL + G++ V +T+ D +LGGE F + + EFKRK+K
Sbjct: 188 GKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLANEFKRKWK 247
Query: 662 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 721
+D+ N RA+ +L A E AK+ LS+ A+ ++SL+EG+DF S++RARFE L + LF
Sbjct: 248 QDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCSSLF 307
Query: 722 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 781
+EP+EK L A + K I+ +VL GGS+RIPK+Q+L++D F E+ SI+PDE +A
Sbjct: 308 PKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDEVIA 367
Query: 782 YGAAVQAA 789
GAA QA
Sbjct: 368 IGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 2e-57
Identities = 91/217 (41%), Positives = 129/217 (59%), Gaps = 4/217 (1%)
Query: 2 TALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRG 61
T +I+RNTTIPT ++Q F+T +D Q V I V +GERAM KDN LGKF LT IPPAPRG
Sbjct: 404 TKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRG 463
Query: 62 VPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDE 121
VPQIEV+F+ID NGIL V+A ++ TG+E I ITN G LS +IERM +AEKY ED
Sbjct: 464 VPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAEKYAEEDR 522
Query: 122 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKE 181
++K +I KN +S ++ +ST+++ + IS+ + + K ++ + E
Sbjct: 523 RRKQLIELKNQADSLLYSYESTLKEN--GELISEELKQRAEQKVE-QLEAALTDPNISLE 579
Query: 182 EFEHKQKELEAICNPIITKLYQGSGGAPVQPFTTTQV 218
E + + +E + I ++YQ G T
Sbjct: 580 ELKQQLEEFQQALLAIGAEVYQQGGSQTTDTVEPTSD 616
|
Length = 653 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 2e-57
Identities = 90/216 (41%), Positives = 126/216 (58%), Gaps = 27/216 (12%)
Query: 352 QHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDA 411
+ G+ E++ ++QG PS V + + +G A+ A +P NTI KR +GR D
Sbjct: 37 RSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD- 95
Query: 412 TVQADMKHWPFE-VVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVS 470
+Q H P++ V S+ G P I+ K+ P EVS+ +L +++ AE LG +
Sbjct: 96 -IQQRYPHLPYQFVASENGMPLIRT--AQGLKS--PVEVSAEILKALRQRAEETLGGELD 150
Query: 471 NAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDK 530
AVIT VPAYF+D+QRQATKD+ +AGLNVLR++NEPTAAAIAYGLD
Sbjct: 151 GAVIT-------------VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDS 197
Query: 531 KVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
G E + ++DLGGGTFD+SIL + G+FE
Sbjct: 198 --GQ-----EGVIAVYDLGGGTFDISILRLSKGVFE 226
|
Length = 616 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 2e-56
Identities = 98/206 (47%), Positives = 132/206 (64%), Gaps = 8/206 (3%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT +I RNTTIPTK+++ F+T DNQ V I V +GER + KDN LG F L IPPAPR
Sbjct: 403 MTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPR 462
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGIL+VTA +K TGKE ITI L K+++ERMV +AEK AED
Sbjct: 463 GVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAED 521
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL-DANQLAE 179
++++ I KN ES C+ + +++ LKDKIS+ ++ +I ++IK L A Q
Sbjct: 522 KEKREKIDLKNQAESLCYQAEKQLKE--LKDKISEEKKEKI----ENLIKKLRQALQNDN 575
Query: 180 KEEFEHKQKELEAICNPIITKLYQGS 205
E + +EL+ I ++Y +
Sbjct: 576 YESIKSLLEELQKALMEIGKEVYSST 601
|
Length = 621 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 7e-55
Identities = 91/220 (41%), Positives = 124/220 (56%), Gaps = 22/220 (10%)
Query: 349 GVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGR 406
GV+Q G+ +II ++ G ++ PS VAFT L+G A Q NP NTI+DAKR IG+
Sbjct: 35 GVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNPQNTIYDAKRFIGK 94
Query: 407 KFEDATVQADMKHWPFEVVSD-GGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYL 465
F ++ + + F+V + E KT PEE+ S ++ K+++ AE YL
Sbjct: 95 IFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSRLILKLRKMAEKYL 154
Query: 466 GKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 525
G V AVI+ VPA F++ QR AT + +AGL VLR+INEPTAAA+A
Sbjct: 155 GTPVGKAVIS-------------VPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALA 201
Query: 526 YGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIF 565
YGL KK NVL+ DLGGGT DVS+L + G+F
Sbjct: 202 YGLHKK------QDVFNVLVVDLGGGTLDVSLLNKQGGMF 235
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 6e-53
Identities = 77/188 (40%), Positives = 106/188 (56%), Gaps = 11/188 (5%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 660
E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD + + +KY
Sbjct: 178 KKEGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLL----KKY 233
Query: 661 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 720
+ L +AK LS + + +E+ G DF +ITR FE+L L
Sbjct: 234 GLKSLISDEDQAELLLIARKAKEALSGAEE--VEVR----GQDFKCTITREEFEKLIDPL 287
Query: 721 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAV 780
+ T+ +++LRDA + I ++LVGGSTRIP VQ+ + FF K L INPDE V
Sbjct: 288 VKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLC-DINPDEVV 346
Query: 781 AYGAAVQA 788
A GAA+QA
Sbjct: 347 AIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 5e-52
Identities = 98/245 (40%), Positives = 133/245 (54%), Gaps = 35/245 (14%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAF-TDTERLIGDAAKNQVAMNPNNTIFDAKR 402
T++L + G E++ + +G PS V + D +G A A +P NTI KR
Sbjct: 9 TNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKR 68
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
L+GR ED + + P+ V DG +++ T P EVS+ +L K+K+ AE
Sbjct: 69 LMGRSIEDIKTFSIL---PYRFV-DGPGEMVRLRTVQGTVT--PVEVSAEILKKLKQRAE 122
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
LG + AVIT VPAYF+D+QRQATKD+ +AGLNVLR++NEPTAA
Sbjct: 123 ESLGGDLVGAVIT-------------VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAA 169
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLG 579
A+AYGLDK + E ++DLGGGTFDVSIL + G+FE G+ LG
Sbjct: 170 AVAYGLDK-------ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSA-----LG 217
Query: 580 GGTFD 584
G FD
Sbjct: 218 GDDFD 222
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 2e-51
Identities = 83/223 (37%), Positives = 133/223 (59%), Gaps = 17/223 (7%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
TSA V++ G+ +++AND G+R TP+ VAFTDTE ++G AAK N NTI K++
Sbjct: 10 TSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAANTIVKNKQI 69
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
+GR + D Q + +++ G+PK ++ + + K P+EV+ ++ KMKE A+
Sbjct: 70 LGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFKKMKEIAQ- 128
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
+ LG + VITVP YF++ Q+ A +++ AG NVLRII+EP+AAA
Sbjct: 129 ------------SALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAA 176
Query: 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
+AYG+ G + +G+ VL++ LGG + DV+IL + G++
Sbjct: 177 LAYGI----GQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYR 215
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 8e-50
Identities = 76/196 (38%), Positives = 118/196 (60%), Gaps = 7/196 (3%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 660
+ +RNV++ D GG DVS++ + G++ + +TA D LGG+ D+ +V HF +EF +K
Sbjct: 191 ALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALVKHFAKEFTKKT 250
Query: 661 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 720
K D TN RAL +LR E K+TLS+ST A+ ++SL EG+DF++SI R RFE L + +
Sbjct: 251 KTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFHSSINRLRFELLASAV 310
Query: 721 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKS 773
FR V ++ A +D I +++LVGG+ PK+ L F ++K+
Sbjct: 311 FRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLFPETTTITAPITVSKA 370
Query: 774 INPDEAVAYGAAVQAA 789
++P E VA G A+QA+
Sbjct: 371 LDPSELVARGCAIQAS 386
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 1e-49
Identities = 86/194 (44%), Positives = 124/194 (63%), Gaps = 7/194 (3%)
Query: 605 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDL 664
NVL+ DLGGGT DVS+L + G+F ++ AG+ LGG+DF+ R++ + Q+ KY K
Sbjct: 212 NVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYLYQKIYEKYGKVP 271
Query: 665 TTNKRALRRLRTACERAK--RTLSSSTQASIEIDSLFEG---VDFYTSITRARFEELNAD 719
NK ++RLR A E AK TL ST S+ + L EG V F +TR FE LN D
Sbjct: 272 D-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYELTRDEFETLNED 330
Query: 720 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 779
LF+ + P+E L + +DK ++ +IVLVGGSTRIP++++++ FF GK+ N S++P+ A
Sbjct: 331 LFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFF-GKDPNTSVDPELA 389
Query: 780 VAYGAAVQAAILHG 793
V G A+QA I+ G
Sbjct: 390 VVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 3e-47
Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 8/213 (3%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT +I RNTT+PT +++ F+T +D Q V I V +GER +DN LG F L IPPAPR
Sbjct: 440 MTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPR 499
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEV FDIDANGIL+V+A +K TGK+ ITIT L K+++ERMV +AEK+ ED
Sbjct: 500 GVPQIEVKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAKED 558
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAE- 179
++++ + KN +S + + +++ L DK+ + ++ K ++ + + +
Sbjct: 559 KEKRDAVDTKNQADSVVYQTEKQLKE--LGDKVPADVKEKVEAKLKELKDAIASGSTQKM 616
Query: 180 KEEFEHKQKELEAICNPIITKLYQGSGGAPVQP 212
K+ +E+ I LY G P
Sbjct: 617 KDAMAALNQEVMQIGQ----SLYNQPGAGGAGP 645
|
Length = 673 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 3e-47
Identities = 133/481 (27%), Positives = 204/481 (42%), Gaps = 131/481 (27%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T++L + + KV++I + P+ + FT IG+ N + KRL
Sbjct: 29 TNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGN----------NKGLRSIKRL 78
Query: 404 IGRKFED----ATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKE 459
G+ ++ + + +K + + + + K+ K E+++ + +K
Sbjct: 79 FGKTLKEILNTPALFSLVKDY---LDVNSSELKLNFA----NKQLRIPEIAAEIFIYLKN 131
Query: 460 TAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 519
AE L ++ AVIT VPA+FND+ R + IAG VLR+I EP
Sbjct: 132 QAEEQLKTNITKAVIT-------------VPAHFNDAARGEVMLAAKIAGFEVLRLIAEP 178
Query: 520 TAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLG 579
TAAA AYGL+K + G + L++DLG
Sbjct: 179 TAAAYAYGLNKN-----------------------------QKGCY--------LVYDLG 201
Query: 580 GGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 639
GGTFDVSIL I+E GIF+V +T GD L
Sbjct: 202 GGTFDVSILNIQE---------------------------------GIFQVIATNGDNML 228
Query: 640 GGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLF 699
GG D D + + +F DL + L+ ++AK TL+ + S D++
Sbjct: 229 GGNDIDVVITQYLCNKF------DLPNSIDTLQ----LAKKAKETLTY--KDSFNNDNI- 275
Query: 700 EGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 759
SI + E+L L T+ ++ L A I ++LVGG+TRIP ++
Sbjct: 276 -------SINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKD 326
Query: 760 LLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG 819
L F L+ I+PD+AV +GAA+QA L + LL+DV PLSLG+E GG
Sbjct: 327 ELYKAFKVDILS-DIDPDKAVVWGAALQAENL----IAPHTNSLLIDVVPLSLGMELYGG 381
Query: 820 V 820
+
Sbjct: 382 I 382
|
Length = 595 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 3e-43
Identities = 72/181 (39%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
M LI RNTTIP +++ F+T +NQ V I V++GER M DN LG+F+L+ IPPAPR
Sbjct: 403 MKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPR 462
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQ++V FDIDANGIL V+A +++TG+E +TI LS++++ RM+ +AE ED
Sbjct: 463 GVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADED 521
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ--ILDKCNDVIKWLDANQLA 178
+++ I +N + + + D L+ AER + + DV L+ +
Sbjct: 522 RRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDR 581
Query: 179 E 179
E
Sbjct: 582 E 582
|
Length = 668 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 2e-41
Identities = 79/160 (49%), Positives = 114/160 (71%), Gaps = 4/160 (2%)
Query: 2 TALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRG 61
T +I +NTTIPTK++QTF+T +DNQ V I+V++GER M DN ++G+F+L IPPAPRG
Sbjct: 429 TRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRG 488
Query: 62 VPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDE 121
VPQIEVTFDIDANGI +VTA +K+TGK ITIT + G LSKE IE+M+ D+E++ D
Sbjct: 489 VPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADR 547
Query: 122 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 161
++ ++ +N+ E+ + + + K +SDAE+ +
Sbjct: 548 VKRELVEVRNNAETQLTTAERQLGEWKY---VSDAEKENV 584
|
Length = 657 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 3e-41
Identities = 87/238 (36%), Positives = 130/238 (54%), Gaps = 20/238 (8%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFE 409
V + G +E +AN+ +R TPS ++F R IG AAKNQ + NNT+ + KR GR F
Sbjct: 16 VARAGGIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSNFKRFHGRAFN 75
Query: 410 DATVQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
D VQ + ++ +++V G +KV Y GE F E++++M+LTK+KETAE
Sbjct: 76 DPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAMLLTKLKETAE------ 129
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
L K V++ VI+VP++F D++R++ D+ I GLN LR++N+ TA A+ YG+
Sbjct: 130 -------NNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGI 182
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFD--LGGGTFD 584
K+ + R V+ D+G F VS G + G FD LGG FD
Sbjct: 183 YKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGT----AFDPFLGGKNFD 236
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-38
Identities = 74/237 (31%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 354 GKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413
GK ++IAN+ G R PS +++ + G+ AK Q+ N NTI + + L+G+ F + V
Sbjct: 20 GKADVIANEDGERQIPSAISYHGEQEYHGNQAKAQLIRNAKNTITNFRDLLGKPFSEIDV 79
Query: 414 QADMKHWPFEVVSDGGK--PKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSN 471
A P V + K E + EV+ L ++KE AE +LGK V+
Sbjct: 80 SAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVRFLRRLKEAAEDFLGKKVAG 139
Query: 472 AVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKK 531
AV++ VP +F+D Q +A + AGL VL++I EP AA +AY +
Sbjct: 140 AVLS-------------VPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLAYDAGEP 186
Query: 532 VGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLI----FDLGGGTFD 584
A +RNV++ D GG DVS++ + G++ +L LGG T D
Sbjct: 187 TEDEA--LDRNVVVADFGGTRTDVSVIAVRGGLY------TILATAHDPGLGGDTLD 235
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-36
Identities = 75/189 (39%), Positives = 107/189 (56%), Gaps = 2/189 (1%)
Query: 604 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 663
R V+ D+G F VS G +V TA D LGG++FD ++V HF EFK KYK D
Sbjct: 195 RIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEHFCAEFKTKYKLD 254
Query: 664 LTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
+ RAL RL CE+ K+ +SS ST + I+ D + R++FEEL ADL +
Sbjct: 255 AKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCADLLQ 314
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 782
P+ L + + + +VGG+TRIP V++ + FF GK+++ ++N DEAVA
Sbjct: 315 RIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFF-GKDVSTTLNADEAVAR 373
Query: 783 GAAVQAAIL 791
G A+Q AIL
Sbjct: 374 GCALQCAIL 382
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 4e-35
Identities = 64/162 (39%), Positives = 90/162 (55%), Gaps = 11/162 (6%)
Query: 4 LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 63
+I RNT IP + Q FTTY D Q ++I V +GER + +D L +FEL IPP G
Sbjct: 392 IIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAA 451
Query: 64 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED--- 120
+I VTF +DA+G+L V+A E+STG E I + G LS E+IERM+ D+ K+ ED
Sbjct: 452 RIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAEEDMYA 510
Query: 121 -EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 161
+ + A+ LE+ + D L +S+ ER I
Sbjct: 511 RALAEQKVEAERILEAL---QAALAADGDL---LSEDERAAI 546
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 6e-34
Identities = 64/165 (38%), Positives = 91/165 (55%), Gaps = 17/165 (10%)
Query: 4 LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 63
+I RNTTIP + Q FTT+ D Q + I V +GER + D L +FEL IPP G
Sbjct: 408 IIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAA 467
Query: 64 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED--- 120
+I VTF +DA+G+L+VTA+EKSTG E I + G L+ ++I RM+ D+ + ED
Sbjct: 468 RIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEEDMQA 526
Query: 121 ----EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 161
E++ + A+ LE+ + D L +S AER I
Sbjct: 527 RALAEQK---VEAERVLEAL---QAALAADGDL---LSAAERAAI 562
|
Length = 616 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 5e-25
Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 8/206 (3%)
Query: 4 LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 63
+I RNT IP + FTTY+DNQ G+ + +GER M D L +FEL +PP G
Sbjct: 386 IIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSI 445
Query: 64 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQ 123
+ EVTF IDA+GIL+V+A EK + + I + + G + K +I+ M+ +A K D
Sbjct: 446 RAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTT 504
Query: 124 KAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI---LDKCNDVIKWLDANQLAEK 180
+ + A E+ FN++ + +L +S++E + I LD + + D +
Sbjct: 505 RLLQEAVIEAEALIFNIERAI--AELTTLLSESEISIINSLLDNIKEAVHARDIILINNS 562
Query: 181 -EEFEHK-QKELEAICNPIITKLYQG 204
+EF+ K +K ++ N II L +G
Sbjct: 563 IKEFKSKIKKSMDTKLNIIINDLLKG 588
|
Length = 595 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 7e-19
Identities = 103/505 (20%), Positives = 156/505 (30%), Gaps = 159/505 (31%)
Query: 345 SALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLI 404
SA+ V + G+ ++ + G+ T PS + F E + L
Sbjct: 10 SAV-AVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREV-----------------LF 51
Query: 405 GRKFEDATVQADMKHWPFEVVSDG----------GKPKIKVEYKGEAKTFFPEEVSSMVL 454
GR A ++ +G G + E + + E++ + L
Sbjct: 52 GRAAIAAYLEGPG---------EGRLMRSLKSFLGSSLFR-ETRIFGRRLTFEDLVARFL 101
Query: 455 TKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQ----RQATKDSGTI--- 507
++K+ AEA LG + VI G+ P +F QA
Sbjct: 102 AELKQRAEAALGAEIDRVVI----GR---------PVHFVGDDEAADAQAEARLRAAARA 148
Query: 508 AGLNVLRIINEPTAAAIAYG--LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIF 565
AG + EP AAA+ Y L + E VL+ D+GGGT D S+
Sbjct: 149 AGFKDVEFQYEPIAAALDYEQRLTR---------EELVLVVDIGGGTSDFSL-------- 191
Query: 566 EGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIED 625
LG + + L G +GG FD +
Sbjct: 192 ----------VRLGPSRRGRADRRAD---ILAHSGVR--------IGGTDFDRRL--SLH 228
Query: 626 GIFEVKSTAGDTHLG----GEDFDNR---------------MVNHF----VQEFKRKYKK 662
+ LG +N R+ +
Sbjct: 229 AVMP--------LLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLRELRELAR 280
Query: 663 DLTTNKRALRRLRT------------ACERAKRTLSSSTQASIEIDSLFEGVDFYTSITR 710
D L RL T A E AK LSS + I++D F V +TR
Sbjct: 281 D-AVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLD--FVEVGLEAPVTR 337
Query: 711 ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF----- 765
A FE A V+++L A + I + L GGS+ +P V++ F
Sbjct: 338 AEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFPAARI 397
Query: 766 -NGKELNKSINPDEAVAYGAAVQAA 789
G +VA G A+ AA
Sbjct: 398 VEGDAF-------GSVASGLALAAA 415
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 5e-10
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 30/158 (18%)
Query: 442 KTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNA--VITVPAYFNDSQRQ 499
+V + L + E A L KT N TA + V+TVPA ++D+ +Q
Sbjct: 104 PGKTAVDVIADYLRYLYEHALEELKKTYGNGEFTA------LDIEWVLTVPAIWSDAAKQ 157
Query: 500 ATKDSGTIAGLNV-------LRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGT 552
A +++ AGL L I+ EP AAA+ + G+ L+ D GGGT
Sbjct: 158 AMREAAIKAGLVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDG-FLVCDAGGGT 216
Query: 553 FDVSILTIEDG-------IFEGSGERNVLIFDLGGGTF 583
D+++ + + GSG L G TF
Sbjct: 217 VDLTVYEVTSVEPLRLKELAAGSGG-------LCGSTF 247
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545
VI VP+ +R+A K+S AG + +I EP AAAI GL V GS ++
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL--PVEEPTGS-----MV 154
Query: 546 FDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
D+GGGT +V+++++ GI R +GG FD +I+
Sbjct: 155 VDIGGGTTEVAVISL-GGIVVSRSIR------VGGDEFDEAII 190
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 4e-06
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545
VI VP+ + +R+A D+ AG + +I EP AAAI GLD + G+ ++
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD--IFEPKGN-----MV 146
Query: 546 FDLGGGTFDVSIL 558
D+GGGT +++++
Sbjct: 147 VDIGGGTTEIAVI 159
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 4e-06
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 424 VVSDGGKPKIKVEYKGEAKTFFPE---EVSSMVLTKMKETAEAYLGKTVSNAVITAYLGK 480
V G+ + + L ++ + A L + IT G
Sbjct: 14 VADLDGEILPEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGV 73
Query: 481 TVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGE 540
N + + + G + ++N+ AAA+A GL K E
Sbjct: 74 PKENREVIILPNLLL---IPLALALEDLGGVPVAVVNDAVAAALAEGLFGK-------EE 123
Query: 541 RNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDL 578
VL+ DLG GT ++I +EDG + I +
Sbjct: 124 DTVLVVDLGTGTTGIAI--VEDGKGGVGAAGELGIAEA 159
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 718 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 772
ADL R +E V +LRD+ + I I L+GG + P +++L D F G ++
Sbjct: 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDV 420
Query: 773 SINPDEAVAYGAAVQAAILHGDKS 796
+E A GAA+ AA G+K
Sbjct: 421 P-EGEEGPALGAAILAAWALGEKD 443
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-05
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 40/195 (20%)
Query: 606 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 665
++ D+GGGT +++++++ GI KS +GG+DFD ++ + +RKY
Sbjct: 144 NMVVDIGGGTTEIAVISL-GGIVVSKS----IRVGGDDFDEAIIRY----VRRKYN---- 190
Query: 666 TNKRALRRL----RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 721
L RTA E K + S+ E +G D T + R E+ ++
Sbjct: 191 --------LLIGERTA-EEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEV 239
Query: 722 RGTM-EPVEKSLRDAK--MDK------AQIHD--IVLVGGSTRIPKVQKLLQDFFNGKEL 770
R + EP+++ + K ++K A I D IVL GG + + +L+ + G +
Sbjct: 240 REALKEPLDEIVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPV 298
Query: 771 NKSINPDEAVAYGAA 785
+ +P VA GA
Sbjct: 299 RVAEDPLTCVAKGAG 313
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 483 SNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERN 542
VI VP+ + +R+A K++ AG + +I EP AAAI GL V G+
Sbjct: 94 PRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGLP--VEEPTGN---- 147
Query: 543 VLIFDLGGGTFDVSILT 559
++ D+GGGT +V++++
Sbjct: 148 -MVVDIGGGTTEVAVIS 163
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545
+I +P +++A +++ AG + +I EP AAAI GLD + +G+ ++
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGN-----MV 151
Query: 546 FDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
D+GGGT D+++L++ GI S + + G FD +I+
Sbjct: 152 VDIGGGTTDIAVLSLG-GIVTSSSIK------VAGDKFDEAII 187
|
Length = 336 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 9e-05
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 484 NAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNV 543
VI VP+ + +R+A +++ AG + +I EP AAAI GL V G+
Sbjct: 102 RIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--VTEPVGN----- 154
Query: 544 LIFDLGGGTFDVSIL 558
++ D+GGGT +V+++
Sbjct: 155 MVVDIGGGTTEVAVI 169
|
Length = 335 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545
VI VP+ D +R+A K++ AG + +I EP AAAI GL + GS ++
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP--IMEPTGS-----MV 157
Query: 546 FDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
D+GGGT +V+++++ GI S R +GG D +I+
Sbjct: 158 VDIGGGTTEVAVISL-GGIVSSSSVR------VGGDKMDEAII 193
|
Length = 342 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 53/146 (36%)
Query: 424 VVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVS 483
VV DG I V++ G + ++ ++K T E LG+ +++A TA T
Sbjct: 57 VVRDG----IVVDFIG----------AVTIVRRLKATLEEKLGRELTHAA-TAIPPGTSE 101
Query: 484 NAVITVPAYFNDSQRQATKDSGTI------AGLNVLRIINEPTAAAIAYGLDKKVGSTAG 537
D I AGL V +++EPTAAA G+D
Sbjct: 102 ------------------GDPRAIINVVESAGLEVTHVLDEPTAAAAVLGIDNGA----- 138
Query: 538 SGERNVLIFDLGGGTFDVSILTIEDG 563
+ D+GGGT +SIL +DG
Sbjct: 139 -------VVDIGGGTTGISIL--KDG 155
|
Length = 267 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 41/205 (20%), Positives = 69/205 (33%), Gaps = 34/205 (16%)
Query: 605 NVLIFDLGGGTFDVSILTIEDGI-FEVK-STAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
L+ D GGGT D+++ + +K AG L G F +R F + K + +
Sbjct: 206 GFLVCDAGGGTVDLTVYEVTSVEPLRLKELAAGSGGLCGSTFVDR---AFEELLKERLGE 262
Query: 663 DLTT----NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELN- 717
+ L E KR+ + I S N
Sbjct: 263 LFYELPSKSPALWLILMRFFETIKRSFGGTDN-DTNIVLPGS---LALSKKDPERGIRNG 318
Query: 718 ---------ADLFRGTMEPVEKSLRDAKMDKAQIHD----IVLVGGSTRIPKVQKLLQDF 764
LF +E + + + ++++A+ D I LVGG P ++ L++
Sbjct: 319 ELKISGEDMKSLFDPVIEEIIDLIEE-QLEQAEKGDKVKYIFLVGGFGESPYLRSRLKER 377
Query: 765 FNGKELNKSI----NPDEAVAYGAA 785
F + +P AV GA
Sbjct: 378 F--SSRGIRVLRPPDPQLAVVRGAV 400
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 718 ADLFRGTMEPVEKSLRDAKMDK-----AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 772
A+L R +E LR +D + +I L+GG + P ++++ D N +
Sbjct: 367 ANLARAAVEGATFGLRYG-LDLLRALGLKSTEIRLIGGGAKSPAWRQIIADIMNAE---- 421
Query: 773 SINP--DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 808
+ P +EA A GAA+QAA E+ D+ L ++
Sbjct: 422 VVVPDTEEAAALGAAIQAAWCL--TGEDGADVALAELC 457
|
This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487 |
| >gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 74/321 (23%), Positives = 128/321 (39%), Gaps = 62/321 (19%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGL------NVLRIINEPTAAAIAYGLDKKVGSTAGSG 539
V+TVPA + +Q +++ +AGL L I EP AA+I Y ++
Sbjct: 144 VLTVPAIWKQPAKQFMREAAYLAGLVSPENPEQLLIALEPEAASI-YCRKLRLHQLTDLS 202
Query: 540 ERNVLIFDLGGG-TFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRS 598
+R V FD+ G + D S + + R L+ + G G + + Y
Sbjct: 203 QRAVTNFDIDGSRSIDSSFRQAREQLRRSRHSRTFLV-ESGTGELWSEMQAGDRY----- 256
Query: 599 WGSGERNVLIFDLGGGTFDVSILTIED--GIFE--VKSTAGDTHLGGED--FDNRMVNHF 652
++ D GGGT D+++ IE G + K++ G G D F+ + F
Sbjct: 257 --------IVADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIF 308
Query: 653 VQEFKRKYKKDLTTNKR--ALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFY----- 705
++F +K KR A L A E KRT + ++ I F +DFY
Sbjct: 309 GEDFIDTFKA-----KRPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHRG 363
Query: 706 ----TSITRARFE--------------ELNADLFRGTMEPVEKSLRDAKMDKAQIHDI-- 745
T++ ++ E +LF+ T+ + + + + M K ++ +
Sbjct: 364 QNVETALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHI-ENLMQKPEVKGVKF 422
Query: 746 -VLVGGSTRIPKVQKLLQDFF 765
LVGG P +Q+ +Q+
Sbjct: 423 LFLVGGFAESPMLQRAVQNAL 443
|
Human HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps to 20p13) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12B. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. HSPA12B may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 468 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 39/145 (26%)
Query: 421 PFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGK 480
+VV DG I V++ G + ++ ++K+T E LG +++A G
Sbjct: 27 FADVVRDG----IVVDFLG----------AVEIVRRLKDTLEQKLGIELTHAATAIPPGT 72
Query: 481 TVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGE 540
+ V +S AG+ VL +++EPTAAA +
Sbjct: 73 IEGD--PKVIVNVIES-----------AGIEVLHVLDEPTAAAAVLQIK----------- 108
Query: 541 RNVLIFDLGGGTFDVSILTIEDGIF 565
N + D+GGGT +SIL I+
Sbjct: 109 -NGAVVDVGGGTTGISILKKGKVIY 132
|
Length = 239 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 32/145 (22%)
Query: 453 VLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNV 512
++ ++K+T E LG ++A TA T + + + AGL V
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAA-TAIPPGTEQGDP------------RISINVIESAGLEV 123
Query: 513 LRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIF---EGSG 569
L +++EPTAAA LD + + D+GGGT +SI+ I+ E +G
Sbjct: 124 LHVLDEPTAAADVLQLD------------DGGVVDIGGGTTGISIVKKGKVIYSADEPTG 171
Query: 570 ERNV-LIFDLGGGTFDVSILTIEEY 593
++ L+ G + +S+ E+Y
Sbjct: 172 GTHMTLVL---AGNYGISLEEAEQY 193
|
Length = 277 |
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.002
Identities = 24/118 (20%), Positives = 61/118 (51%), Gaps = 19/118 (16%)
Query: 103 KEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKL--KDKISDAE--- 157
+E+ +R++ +A+K +AE K++A++ AK + +++ E E ++++ E
Sbjct: 37 EEEAKRILEEAKK-EAEAIKKEALLEAKEEI----HKLRNEFEKELRERRNELQKLEKRL 91
Query: 158 ---------RTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG 206
+ ++L+K + ++ + +++E E K++ELE + + +L + SG
Sbjct: 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG 149
|
Length = 520 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 840 | |||
| KOG0100|consensus | 663 | 100.0 | ||
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0101|consensus | 620 | 100.0 | ||
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| KOG0103|consensus | 727 | 100.0 | ||
| KOG0104|consensus | 902 | 100.0 | ||
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| KOG0100|consensus | 663 | 100.0 | ||
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 99.97 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.97 | |
| KOG0101|consensus | 620 | 99.96 | ||
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 99.96 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.96 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 99.95 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 99.95 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 99.94 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 99.94 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.94 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 99.93 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 99.93 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 99.93 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.93 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 99.93 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 99.92 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 99.92 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 99.91 | |
| KOG0102|consensus | 640 | 99.9 | ||
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.89 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 99.85 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 99.8 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.8 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.79 | |
| KOG0103|consensus | 727 | 99.78 | ||
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.66 | |
| KOG0104|consensus | 902 | 99.51 | ||
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.47 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.38 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.33 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.33 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 99.18 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 99.13 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 99.04 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 98.95 | |
| PTZ00004 | 378 | actin-2; Provisional | 98.91 | |
| PTZ00452 | 375 | actin; Provisional | 98.9 | |
| PTZ00281 | 376 | actin; Provisional | 98.89 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 98.8 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 98.77 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 98.58 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.54 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 98.18 | |
| KOG0679|consensus | 426 | 98.14 | ||
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 98.05 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 97.97 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 97.79 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 97.7 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 97.59 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 97.53 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 97.08 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 97.03 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 96.91 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 96.88 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 96.6 | |
| KOG0676|consensus | 372 | 96.6 | ||
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 96.29 | |
| KOG0797|consensus | 618 | 95.65 | ||
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 95.38 | |
| PLN02669 | 556 | xylulokinase | 95.24 | |
| PRK15027 | 484 | xylulokinase; Provisional | 95.22 | |
| KOG0680|consensus | 400 | 95.08 | ||
| PRK13317 | 277 | pantothenate kinase; Provisional | 94.66 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 94.34 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 94.31 | |
| PRK04123 | 548 | ribulokinase; Provisional | 94.21 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 94.18 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 94.16 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 94.11 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 94.09 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 94.03 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 94.0 | |
| KOG2517|consensus | 516 | 94.0 | ||
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 93.55 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 93.45 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 93.45 | |
| PLN02295 | 512 | glycerol kinase | 93.39 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 92.98 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 92.72 | |
| KOG2531|consensus | 545 | 92.51 | ||
| PLN02666 | 1275 | 5-oxoprolinase | 91.89 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 91.12 | |
| KOG0681|consensus | 645 | 91.09 | ||
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 88.93 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 87.65 | |
| KOG0677|consensus | 389 | 87.47 | ||
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 84.12 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 83.43 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 82.28 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 82.12 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 82.05 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 80.9 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 80.59 |
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-76 Score=606.17 Aligned_cols=411 Identities=66% Similarity=1.013 Sum_probs=391.0
Q ss_pred cCCCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChH
Q psy7262 334 FIPSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412 (840)
Q Consensus 334 ~~~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~ 412 (840)
..-+|||| |||||||+++.+|+++||.|++|+|.+||.|+|.+++|++|+.|..++..||++++.+.|||+|+.+++..
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~ 114 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKS 114 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChh
Confidence 45689999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCeeEeecCCcceEEEEEc-CcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCC
Q psy7262 413 VQADMKHWPFEVVSDGGKPKIKVEYK-GEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPA 491 (840)
Q Consensus 413 ~~~~~~~~p~~~~~~~~~~~~~v~~~-~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa 491 (840)
+|.+.+.+||.+++.++++++.|... |+.+.++|+++.+|+|..+++.|+.++|..+ .++|+|||+
T Consensus 115 vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv-------------~~AVvTvPA 181 (663)
T KOG0100|consen 115 VQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKV-------------THAVVTVPA 181 (663)
T ss_pred hhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcc-------------cceEEecch
Confidence 99999999999999999999999987 5689999999999999999999999999876 899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCc
Q psy7262 492 YFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGER 571 (840)
Q Consensus 492 ~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~ 571 (840)
||++.||++..+|-..||++.+++++||+|||++|+++... .
T Consensus 182 YFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~------g-------------------------------- 223 (663)
T KOG0100|consen 182 YFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKD------G-------------------------------- 223 (663)
T ss_pred hcchHHHhhhcccceeccceEEEeecCccHHHHHhcccccC------C--------------------------------
Confidence 99999999999999999999999999999999999887652 2
Q ss_pred eeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHH
Q psy7262 572 NVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH 651 (840)
Q Consensus 572 ~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~ 651 (840)
+++++|||+||||||+|++.+.++.|++++..++.++||++||++.++|
T Consensus 224 -------------------------------EknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~ 272 (663)
T KOG0100|consen 224 -------------------------------EKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEY 272 (663)
T ss_pred -------------------------------cceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHH
Confidence 3346777777777777777888999999999999999999999999999
Q ss_pred HHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHH
Q psy7262 652 FVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKS 731 (840)
Q Consensus 652 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~ 731 (840)
+.+.++++.+.++..+.++..+|+++||+||++||.+.+..+.|+++++|.|++-++||+.|+++--+++...+.+++.+
T Consensus 273 fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kv 352 (663)
T KOG0100|consen 273 FIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKV 352 (663)
T ss_pred HHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccce
Q psy7262 732 LRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLS 811 (840)
Q Consensus 732 l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~s 811 (840)
|+++++...+|+.|+||||++|||-||+.|+++|.+.+.....||++|||+|||.+|..++| .....++++.|++|++
T Consensus 353 l~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsG--ee~t~divLLDv~pLt 430 (663)
T KOG0100|consen 353 LEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSG--EEDTGDIVLLDVNPLT 430 (663)
T ss_pred HhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccccc--ccCcCcEEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 5677899999999999
Q ss_pred eEEEeeCCeEEEccccC
Q psy7262 812 LGIETAGGVSYSQSQLG 828 (840)
Q Consensus 812 ~gi~~~~~~~~~~~~~~ 828 (840)
+|||+.||+|-..++.+
T Consensus 431 lGIETvGGVMTklI~RN 447 (663)
T KOG0100|consen 431 LGIETVGGVMTKLIPRN 447 (663)
T ss_pred ceeeeecceeeccccCC
Confidence 99999999999888654
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-65 Score=603.05 Aligned_cols=418 Identities=75% Similarity=1.095 Sum_probs=378.4
Q ss_pred cCCCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChH
Q psy7262 334 FIPSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412 (840)
Q Consensus 334 ~~~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~ 412 (840)
..+++||| |||||+||++++|.+++|+|..|+|++||+|+|.++++++|..|..++..+|.++++++||+||+.+.++.
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 34578999 99999999999999999999999999999999998899999999999999999999999999999999988
Q ss_pred HHhhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCC
Q psy7262 413 VQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPA 491 (840)
Q Consensus 413 ~~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa 491 (840)
++...+.+||.+.. .++...+.+.+.++...++|++|++++|++|++.|+.+++..+ .++|||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v-------------~~~VItVPa 149 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQV-------------KDAVVTVPA 149 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCc-------------ceeEEEeCC
Confidence 88888889998764 6677788888888888999999999999999999999988755 899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCc
Q psy7262 492 YFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGER 571 (840)
Q Consensus 492 ~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~ 571 (840)
+|++.||+++++||+.|||+.+++++||+|||++|+..... ..+.++||+|+||||+|+|++++.
T Consensus 150 ~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~-----~~~~~vlv~D~GggT~dvsv~~~~---------- 214 (653)
T PTZ00009 150 YFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKG-----DGEKNVLIFDLGGGTFDVSLLTIE---------- 214 (653)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccC-----CCCCEEEEEECCCCeEEEEEEEEe----------
Confidence 99999999999999999999999999999999999875432 135678888888888888887653
Q ss_pred eeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHH
Q psy7262 572 NVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH 651 (840)
Q Consensus 572 ~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~ 651 (840)
++.+++++..++..+||.+||.+|+++
T Consensus 215 -----------------------------------------------------~~~~~v~a~~gd~~lGG~d~D~~l~~~ 241 (653)
T PTZ00009 215 -----------------------------------------------------DGIFEVKATAGDTHLGGEDFDNRLVEF 241 (653)
T ss_pred -----------------------------------------------------CCeEEEEEecCCCCCChHHHHHHHHHH
Confidence 235677888888999999999999999
Q ss_pred HHHHHHHhcc-CCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHH
Q psy7262 652 FVQEFKRKYK-KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEK 730 (840)
Q Consensus 652 l~~~~~~~~~-~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~ 730 (840)
+.+++.+++. .++..+++.+.+|+.+||++|+.||.+..+.+.++.+.++.++.+.|||++|+++++|+++++.++|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~ 321 (653)
T PTZ00009 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEK 321 (653)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987663 566678899999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccc
Q psy7262 731 SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPL 810 (840)
Q Consensus 731 ~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~ 810 (840)
+|+++++...+|+.|+||||+||+|+|++.|++.|++..+....||++|||+|||++|+++++...+.++++.++|++|+
T Consensus 322 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~ 401 (653)
T PTZ00009 322 VLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPL 401 (653)
T ss_pred HHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeeccc
Confidence 99999999999999999999999999999999999777788889999999999999999999866678889999999999
Q ss_pred eeEEEeeCCeEEEccccCceEe
Q psy7262 811 SLGIETAGGVSYSQSQLGWLLI 832 (840)
Q Consensus 811 s~gi~~~~~~~~~~~~~~~~~~ 832 (840)
+||+++.++.+.++++.+..++
T Consensus 402 slgi~~~~~~~~~ii~~~t~iP 423 (653)
T PTZ00009 402 SLGLETAGGVMTKLIERNTTIP 423 (653)
T ss_pred ccCccccCCceEEEEeCCCcCC
Confidence 9999999988887775544433
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=595.17 Aligned_cols=413 Identities=46% Similarity=0.747 Sum_probs=369.5
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~~ 414 (840)
.++||| |||||+||++++|.+++|+|..|.+++||+|+|.++++++|..|..+...+|.++++++||+||+.+.+..++
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~ 107 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQ 107 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHH
Confidence 588999 9999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhcccCCeeEeec-CCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCC
Q psy7262 415 ADMKHWPFEVVSD-GGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYF 493 (840)
Q Consensus 415 ~~~~~~p~~~~~~-~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~ 493 (840)
.....+||.+... ++... +.. +.+..++|++|.+++|++|++.|+.++|.++ ..+|||||++|
T Consensus 108 ~~~~~~p~~vv~~~~~~~~--i~~-~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v-------------~~aVITVPayF 171 (657)
T PTZ00186 108 KDIKNVPYKIVRAGNGDAW--VQD-GNGKQYSPSQIGAFVLEKMKETAENFLGHKV-------------SNAVVTCPAYF 171 (657)
T ss_pred HhhccCcEEEEEcCCCceE--EEe-CCCeEEcHHHHHHHHHHHHHHHHHHHhCCcc-------------ceEEEEECCCC
Confidence 8889999998753 33332 222 3357899999999999999999999998765 89999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCcee
Q psy7262 494 NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNV 573 (840)
Q Consensus 494 ~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~ 573 (840)
++.||+++++||+.|||+.+++++||+|||++|+.... .+.++||+|+||||+|+|++++.
T Consensus 172 ~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~-------~~~~vlV~DlGGGT~DvSil~~~------------ 232 (657)
T PTZ00186 172 NDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT-------KDSLIAVYDLGGGTFDISVLEIA------------ 232 (657)
T ss_pred ChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC-------CCCEEEEEECCCCeEEEEEEEEe------------
Confidence 99999999999999999999999999999999976542 35678888888888888877643
Q ss_pred EEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHH
Q psy7262 574 LIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653 (840)
Q Consensus 574 ~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~ 653 (840)
++.+++++..++..+||.+||.+|++|+.
T Consensus 233 ---------------------------------------------------~g~~~V~at~Gd~~LGG~DfD~~l~~~~~ 261 (657)
T PTZ00186 233 ---------------------------------------------------GGVFEVKATNGDTHLGGEDFDLALSDYIL 261 (657)
T ss_pred ---------------------------------------------------CCEEEEEEecCCCCCCchhHHHHHHHHHH
Confidence 34577888889999999999999999999
Q ss_pred HHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCC----eeeEEEEehHHHHHHHHHHHHHHHHHHH
Q psy7262 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEPVE 729 (840)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~e~e~~~~~~i~~i~~~i~ 729 (840)
++|+.+++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++.+.|||++|+++++|+++++..++.
T Consensus 262 ~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~ 341 (657)
T PTZ00186 262 EEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCK 341 (657)
T ss_pred HHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHH
Confidence 999988887887888999999999999999999999988888765432 3578999999999999999999999999
Q ss_pred HHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEecc
Q psy7262 730 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTP 809 (840)
Q Consensus 730 ~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~ 809 (840)
++|+++++...+|+.|+||||+||+|.|++.|++.| +.......||++|||+|||++|+.+++. ++++.+.|++|
T Consensus 342 ~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p 416 (657)
T PTZ00186 342 QCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTP 416 (657)
T ss_pred HHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCceEEEeecc
Confidence 999999999999999999999999999999999999 4556678899999999999999999872 46889999999
Q ss_pred ceeEEEeeCCeEEEccccCceEeeeccCCC
Q psy7262 810 LSLGIETAGGVSYSQSQLGWLLIFYVCNPF 839 (840)
Q Consensus 810 ~s~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (840)
++||+++.+|.+.++++.+..++..++..|
T Consensus 417 ~slgie~~~g~~~~iI~rnt~iP~~~~~~f 446 (657)
T PTZ00186 417 LSLGIETLGGVFTRMIPKNTTIPTKKSQTF 446 (657)
T ss_pred ccccceecCCEEEEEEeCCCEeeEEEeecc
Confidence 999999999999999988888887776655
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=585.96 Aligned_cols=411 Identities=47% Similarity=0.758 Sum_probs=362.2
Q ss_pred CCCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEee-CCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChH
Q psy7262 335 IPSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412 (840)
Q Consensus 335 ~~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~-~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~ 412 (840)
..++||| |||||+||++.+|.+.+|+|..|++++||+|+|. ++++++|..|..++..+|.++++++|++||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 3578999 9999999999999999999999999999999998 56899999999999999999999999999998765
Q ss_pred HHhhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCC
Q psy7262 413 VQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPA 491 (840)
Q Consensus 413 ~~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa 491 (840)
++.....+||.+.. +++...+.+ ...+..++|++|++++|++|++.|+.++|.++ .++|||||+
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~--~~~~~~~speel~a~iL~~lk~~ae~~lg~~v-------------~~~VITVPa 144 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKC--PRLEREFAPEELSAMILRKLADDASRYLGEPV-------------TGAVITVPA 144 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEE--ecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCc-------------ceEEEEECC
Confidence 34445678998764 344444443 34458899999999999999999999998765 799999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCc
Q psy7262 492 YFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGER 571 (840)
Q Consensus 492 ~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~ 571 (840)
+|++.||+++++||+.|||+.+++++||+|||++|+.... .+.++||+|+||||+|+|++++.
T Consensus 145 ~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-------~~~~vlV~DlGgGT~Dvsv~~~~---------- 207 (668)
T PRK13410 145 YFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS-------SSQTVLVFDLGGGTFDVSLLEVG---------- 207 (668)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC-------CCCEEEEEECCCCeEEEEEEEEc----------
Confidence 9999999999999999999999999999999999977542 45688899999998888887653
Q ss_pred eeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHH
Q psy7262 572 NVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH 651 (840)
Q Consensus 572 ~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~ 651 (840)
++.+++++..++..+||.+||.+|+++
T Consensus 208 -----------------------------------------------------~g~~~V~at~gd~~lGG~dfD~~l~~~ 234 (668)
T PRK13410 208 -----------------------------------------------------NGVFEVKATSGDTQLGGNDFDKRIVDW 234 (668)
T ss_pred -----------------------------------------------------CCeEEEEEeecCCCCChhHHHHHHHHH
Confidence 235677888898999999999999999
Q ss_pred HHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCC----eeeEEEEehHHHHHHHHHHHHHHHHH
Q psy7262 652 FVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEP 727 (840)
Q Consensus 652 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~e~e~~~~~~i~~i~~~ 727 (840)
+.++|..+++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++...|||++|+++++++++++..+
T Consensus 235 l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~ 314 (668)
T PRK13410 235 LAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRP 314 (668)
T ss_pred HHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999888887887888999999999999999999999888888765432 46788999999999999999999999
Q ss_pred HHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEe
Q psy7262 728 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDV 807 (840)
Q Consensus 728 i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~ 807 (840)
|+++|+++++.+.+|+.|+||||+||+|+|++.|++.| +..+....||++|||+|||++|+++++ .++++.++|+
T Consensus 315 i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~l~Dv 389 (668)
T PRK13410 315 VKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAG----ELKDLLLLDV 389 (668)
T ss_pred HHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhcc----cccceeEEee
Confidence 99999999999999999999999999999999999999 566778889999999999999999987 3578999999
Q ss_pred ccceeEEEeeCCeEEEccccCceEeeeccC
Q psy7262 808 TPLSLGIETAGGVSYSQSQLGWLLIFYVCN 837 (840)
Q Consensus 808 ~~~s~gi~~~~~~~~~~~~~~~~~~~~~~~ 837 (840)
+|+++|+++.+|.+.++++.+..++..++.
T Consensus 390 ~p~slgie~~~g~~~~li~rnt~iP~~~~~ 419 (668)
T PRK13410 390 TPLSLGLETIGGVMKKLIPRNTTIPVRRSD 419 (668)
T ss_pred ccccccceecCCeeEEEEeCCCcccccccc
Confidence 999999999999998888776666555543
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=587.18 Aligned_cols=406 Identities=50% Similarity=0.800 Sum_probs=361.9
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeC-CcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~-~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
+++||| |||||+||++++|.+++|+|..|+|++||+|+|++ +++++|..|..++..+|.++++++|+|||+.+.++.+
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 689999 99999999999999999999999999999999984 5899999999999999999999999999999999888
Q ss_pred HhhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 414 QADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 414 ~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
+.....+||.+.. .++...+. .. +..++|++|++++|++|++.|+.++|..+ .++|||||++
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~--~~--~~~~speel~a~iL~~lk~~ae~~lg~~v-------------~~~VITVPa~ 184 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIE--AQ--GKKYSPSQIGAFVLEKMKETAESYLGRKV-------------KQAVITVPAY 184 (663)
T ss_pred HhhhccCCeEEEecCCCceEEE--EC--CEEECHHHHHHHHHHHHHHHHHHHhCCCC-------------ceEEEEECCC
Confidence 8888899999875 34444443 33 47899999999999999999999998765 8999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
|++.||+++++||+.|||+.+++++||+|||++|+.... .+.++||+|+||||+|+|++++.
T Consensus 185 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-------~~~~vlV~DlGgGT~DvSv~~~~----------- 246 (663)
T PTZ00400 185 FNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN-------DGKTIAVYDLGGGTFDISILEIL----------- 246 (663)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC-------CCcEEEEEeCCCCeEEEEEEEec-----------
Confidence 999999999999999999999999999999999976532 46788999999999988887653
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
++.+++++..++..+||.+||.+|++++
T Consensus 247 ----------------------------------------------------~g~~~v~a~~gd~~LGG~d~D~~l~~~l 274 (663)
T PTZ00400 247 ----------------------------------------------------GGVFEVKATNGNTSLGGEDFDQRILNYL 274 (663)
T ss_pred ----------------------------------------------------CCeeEEEecccCCCcCHHHHHHHHHHHH
Confidence 2346677888889999999999999999
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCC----eeeEEEEehHHHHHHHHHHHHHHHHHH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEPV 728 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~e~e~~~~~~i~~i~~~i 728 (840)
.++|+.+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++++|+++++.+++
T Consensus 275 ~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i 354 (663)
T PTZ00400 275 IAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPC 354 (663)
T ss_pred HHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 9999988887788888999999999999999999998888888765432 478899999999999999999999999
Q ss_pred HHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEec
Q psy7262 729 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 808 (840)
Q Consensus 729 ~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~ 808 (840)
.++|+++++.+.+|+.|+||||+|++|+|++.|++.| +.++....||++|||+|||++|+++++ .++++.+.|++
T Consensus 355 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~----~~~~~~~~dv~ 429 (663)
T PTZ00400 355 EKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKG----EIKDLLLLDVT 429 (663)
T ss_pred HHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcC----CccceEEEecc
Confidence 9999999999999999999999999999999999999 556778899999999999999999987 25788999999
Q ss_pred cceeEEEeeCCeEEEccccCceEee
Q psy7262 809 PLSLGIETAGGVSYSQSQLGWLLIF 833 (840)
Q Consensus 809 ~~s~gi~~~~~~~~~~~~~~~~~~~ 833 (840)
|++||+++.+|.+.++++.+..++.
T Consensus 430 p~slgi~~~~g~~~~ii~~~t~iP~ 454 (663)
T PTZ00400 430 PLSLGIETLGGVFTRLINRNTTIPT 454 (663)
T ss_pred ccceEEEecCCeeEEEEecCccCCc
Confidence 9999999999988877755544433
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-63 Score=584.42 Aligned_cols=408 Identities=50% Similarity=0.789 Sum_probs=359.4
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeC-CcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~-~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
.++||| |||||+||++.+|.+.+|+|..|+|++||+|+|.+ +++++|..|..+...+|.++++++|||||+.+.+...
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 82 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTEE 82 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchhH
Confidence 478999 99999999999999999999999999999999984 5899999999999999999999999999999877543
Q ss_pred HhhcccCCeeEeec-CCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 414 QADMKHWPFEVVSD-GGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 414 ~~~~~~~p~~~~~~-~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
...++||.++.. ++...+ ... +..++|++|++++|++|++.|+.++|..+ .++|||||++
T Consensus 83 --~~~~~~~~~v~~~~~~~~~--~i~--~~~~~peei~a~iL~~lk~~ae~~lg~~v-------------~~~VITVPa~ 143 (653)
T PRK13411 83 --ERSRVPYTCVKGRDDTVNV--QIR--GRNYTPQEISAMILQKLKQDAEAYLGEPV-------------TQAVITVPAY 143 (653)
T ss_pred --HhhcCCceEEecCCCceEE--EEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCc-------------ceEEEEECCC
Confidence 456789987653 333333 333 37899999999999999999999998765 8999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
|++.||+++++||+.|||+.+++++||+|||++|+.... ..+.++||+|+||||+|+|++++.
T Consensus 144 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~------~~~~~vlV~DlGgGT~dvsi~~~~----------- 206 (653)
T PRK13411 144 FTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQ------DQEQLILVFDLGGGTFDVSILQLG----------- 206 (653)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccc------CCCCEEEEEEcCCCeEEEEEEEEe-----------
Confidence 999999999999999999999999999999999977542 135678888888888888877643
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
++.+++++..++..+||.+||.+|++++
T Consensus 207 ----------------------------------------------------~~~~~V~at~gd~~LGG~dfD~~l~~~l 234 (653)
T PRK13411 207 ----------------------------------------------------DGVFEVKATAGNNHLGGDDFDNCIVDWL 234 (653)
T ss_pred ----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHHHHHHH
Confidence 3456788889999999999999999999
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccC----CeeeEEEEehHHHHHHHHHHHHHHHHHH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE----GVDFYTSITRARFEELNADLFRGTMEPV 728 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~e~e~~~~~~i~~i~~~i 728 (840)
.++|..+.+.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++++|+++++.++|
T Consensus 235 ~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i 314 (653)
T PRK13411 235 VENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPM 314 (653)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999988888778888899999999999999999999998888876542 3468899999999999999999999999
Q ss_pred HHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEec
Q psy7262 729 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 808 (840)
Q Consensus 729 ~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~ 808 (840)
+++|+++++.+.+|+.|+||||+||+|+|++.|++.|++..+....||++|||+|||++|+.+++. ++++.++|++
T Consensus 315 ~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~ 390 (653)
T PRK13411 315 QQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVT 390 (653)
T ss_pred HHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeecc
Confidence 999999999999999999999999999999999999977778888999999999999999999873 6789999999
Q ss_pred cceeEEEeeCCeEEEccccCceEeeec
Q psy7262 809 PLSLGIETAGGVSYSQSQLGWLLIFYV 835 (840)
Q Consensus 809 ~~s~gi~~~~~~~~~~~~~~~~~~~~~ 835 (840)
|++||+++.++.+.++++.+..++..+
T Consensus 391 p~slgi~~~~~~~~~ii~r~t~iP~~~ 417 (653)
T PRK13411 391 PLSLGIETLGEVFTKIIERNTTIPTSK 417 (653)
T ss_pred cceeeEEecCCceEEEEECCCccccee
Confidence 999999999998888876655554444
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-62 Score=578.43 Aligned_cols=403 Identities=54% Similarity=0.855 Sum_probs=359.5
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEee-CCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~-~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
+++||| |||||+||++++|.+++++|..|++++||+|+|. ++++++|..|..+...+|.++++++|+|||+. ++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~ 80 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEV 80 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHH
Confidence 578999 9999999999999999999999999999999997 67899999999999999999999999999988 4556
Q ss_pred HhhcccCCeeEeec-CCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 414 QADMKHWPFEVVSD-GGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 414 ~~~~~~~p~~~~~~-~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
+...+.+||.+... ++...+ ...+ ..++|+++++++|++|++.|+.+++..+ .++|||||++
T Consensus 81 ~~~~~~~p~~~~~~~~~~~~~--~~~~--~~~~peel~a~iL~~lk~~ae~~~g~~v-------------~~~VItVPa~ 143 (627)
T PRK00290 81 QKDIKLVPYKIVKADNGDAWV--EIDG--KKYTPQEISAMILQKLKKDAEDYLGEKV-------------TEAVITVPAY 143 (627)
T ss_pred HHHhhcCCeEEEEcCCCceEE--EECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCC-------------ceEEEEECCC
Confidence 66778899998753 333333 3443 7899999999999999999999988765 8999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
|++.||+++++||+.|||+.+++++||+|||++|+.... .+.++||+|+||||+|+|++++.
T Consensus 144 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-------~~~~vlV~D~GggT~dvsv~~~~----------- 205 (627)
T PRK00290 144 FNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-------GDEKILVYDLGGGTFDVSILEIG----------- 205 (627)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC-------CCCEEEEEECCCCeEEEEEEEEe-----------
Confidence 999999999999999999999999999999999976542 45789999999999999888653
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
++.+++++..++..+||.+||.+|++++
T Consensus 206 ----------------------------------------------------~~~~~vla~~gd~~lGG~d~D~~l~~~~ 233 (627)
T PRK00290 206 ----------------------------------------------------DGVFEVLSTNGDTHLGGDDFDQRIIDYL 233 (627)
T ss_pred ----------------------------------------------------CCeEEEEEecCCCCcChHHHHHHHHHHH
Confidence 2356778888989999999999999999
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccC----CeeeEEEEehHHHHHHHHHHHHHHHHHH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE----GVDFYTSITRARFEELNADLFRGTMEPV 728 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~e~e~~~~~~i~~i~~~i 728 (840)
.++++.+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++++++++++.++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 313 (627)
T PRK00290 234 ADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPC 313 (627)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999998888778888899999999999999999999999888876643 2578899999999999999999999999
Q ss_pred HHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEec
Q psy7262 729 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 808 (840)
Q Consensus 729 ~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~ 808 (840)
+++|+++++.+.+|+.|+||||+|++|+|++.|++.| +.++....||++|||+|||++|+.+++ .++++.++|++
T Consensus 314 ~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~----~~~~~~~~d~~ 388 (627)
T PRK00290 314 KQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAG----DVKDVLLLDVT 388 (627)
T ss_pred HHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcC----Cccceeeeecc
Confidence 9999999999999999999999999999999999999 667788899999999999999999987 35789999999
Q ss_pred cceeEEEeeCCeEEEccccCceEe
Q psy7262 809 PLSLGIETAGGVSYSQSQLGWLLI 832 (840)
Q Consensus 809 ~~s~gi~~~~~~~~~~~~~~~~~~ 832 (840)
|++||+++.++.+.++++.+..++
T Consensus 389 ~~slgi~~~~~~~~~ii~~~t~~P 412 (627)
T PRK00290 389 PLSLGIETLGGVMTKLIERNTTIP 412 (627)
T ss_pred ceEEEEEecCCeEEEEecCCCcCC
Confidence 999999999998888776644443
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=579.07 Aligned_cols=409 Identities=50% Similarity=0.766 Sum_probs=360.4
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEee-CCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~-~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
.++||| |||||+||++++|.+.+|+|..|++++||+|+|. ++.+++|..|..+...+|.++++++|+|||+.+.+ .
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 117 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--V 117 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--h
Confidence 589999 9999999999999999999999999999999997 45899999999999999999999999999999865 3
Q ss_pred HhhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 414 QADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 414 ~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
+.....+||.+.. .++...+.+.. .+..++|+++++++|++|++.++.+++..+ .++|||||++
T Consensus 118 ~~~~~~~~~~v~~~~~~~v~~~~~~--~~~~~speei~a~iL~~lk~~ae~~lg~~v-------------~~~VITVPa~ 182 (673)
T PLN03184 118 DEESKQVSYRVVRDENGNVKLDCPA--IGKQFAAEEISAQVLRKLVDDASKFLNDKV-------------TKAVITVPAY 182 (673)
T ss_pred hhhhhcCCeEEEecCCCcEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHHhCCCC-------------CeEEEEECCC
Confidence 4456778998865 34444444433 346899999999999999999999888755 8999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
|++.||+++++||+.|||+.+++++||+|||++|+.... .+.++||+|+||||+|+|++++.
T Consensus 183 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-------~~~~vlV~DlGgGT~DvSi~~~~----------- 244 (673)
T PLN03184 183 FNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK-------SNETILVFDLGGGTFDVSVLEVG----------- 244 (673)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC-------CCCEEEEEECCCCeEEEEEEEec-----------
Confidence 999999999999999999999999999999999976542 45678889999999888887653
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
++.+++++..++..+||.+||.+|++++
T Consensus 245 ----------------------------------------------------~~~~eVla~~gd~~LGG~dfD~~L~~~~ 272 (673)
T PLN03184 245 ----------------------------------------------------DGVFEVLSTSGDTHLGGDDFDKRIVDWL 272 (673)
T ss_pred ----------------------------------------------------CCEEEEEEecCCCccCHHHHHHHHHHHH
Confidence 2356788888999999999999999999
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccC----CeeeEEEEehHHHHHHHHHHHHHHHHHH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE----GVDFYTSITRARFEELNADLFRGTMEPV 728 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~e~e~~~~~~i~~i~~~i 728 (840)
.++|+.+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++...|||++|+++++++++++.++|
T Consensus 273 ~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i 352 (673)
T PLN03184 273 ASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPV 352 (673)
T ss_pred HHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999998888777788999999999999999999999998888875532 3578899999999999999999999999
Q ss_pred HHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEec
Q psy7262 729 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 808 (840)
Q Consensus 729 ~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~ 808 (840)
+++|+++++...+|+.|+||||+||+|.|++.|++.| +..+....||++|||+|||++|+++++ .++++.++|++
T Consensus 353 ~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~~~dv~ 427 (673)
T PLN03184 353 ENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAG----EVSDIVLLDVT 427 (673)
T ss_pred HHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhcc----CccceEEEecc
Confidence 9999999999999999999999999999999999999 566777889999999999999999987 35678999999
Q ss_pred cceeEEEeeCCeEEEccccCceEeeecc
Q psy7262 809 PLSLGIETAGGVSYSQSQLGWLLIFYVC 836 (840)
Q Consensus 809 ~~s~gi~~~~~~~~~~~~~~~~~~~~~~ 836 (840)
|++||+++.++.+.++++.+..++..+.
T Consensus 428 p~slgi~~~~~~~~~ii~r~t~iP~~~~ 455 (673)
T PLN03184 428 PLSLGLETLGGVMTKIIPRNTTLPTSKS 455 (673)
T ss_pred cccceEEecCCeeEEEEeCCCccceecc
Confidence 9999999999999888876655554443
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=571.38 Aligned_cols=403 Identities=55% Similarity=0.857 Sum_probs=357.5
Q ss_pred Ccccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCC-cEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHHH
Q psy7262 337 SHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414 (840)
Q Consensus 337 ~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~-~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~~ 414 (840)
++||| |||||+||++++|.+.+++|..|++++||+|+|.++ ++++|..|..++..+|.++++++|+|||+.+. .++
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~~ 79 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EVT 79 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HHH
Confidence 57999 999999999999999999999999999999999954 89999999999999999999999999999873 355
Q ss_pred hhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCC
Q psy7262 415 ADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFN 494 (840)
Q Consensus 415 ~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~ 494 (840)
.....+||.+..+++...+.+ . +..++|+++++++|++|++.++.+++.++ .++|||||++|+
T Consensus 80 ~~~~~~~~~v~~~~~~~~~~v--~--~~~~~peel~a~~L~~l~~~a~~~~~~~v-------------~~~VItVPa~f~ 142 (595)
T TIGR02350 80 EEAKRVPYKVVGDGGDVRVKV--D--GKEYTPQEISAMILQKLKKDAEAYLGEKV-------------TEAVITVPAYFN 142 (595)
T ss_pred HHhhcCCeeEEcCCCceEEEE--C--CEEecHHHHHHHHHHHHHHHHHHHhCCCC-------------CeEEEEECCCCC
Confidence 567789998555555555544 3 47899999999999999999999998765 799999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeE
Q psy7262 495 DSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVL 574 (840)
Q Consensus 495 ~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~ 574 (840)
+.||+++++||+.|||+.+.+++||+|||++|+.... ..+.++||+|+||||+|+|++++.
T Consensus 143 ~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~------~~~~~vlV~D~Gggt~dvsv~~~~------------- 203 (595)
T TIGR02350 143 DAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS------KKDEKILVFDLGGGTFDVSILEIG------------- 203 (595)
T ss_pred HHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc------CCCcEEEEEECCCCeEEEEEEEec-------------
Confidence 9999999999999999999999999999999976542 246788999999999998888653
Q ss_pred EEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHH
Q psy7262 575 IFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 654 (840)
Q Consensus 575 ~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~ 654 (840)
++.+++++..++..+||.+||..|++++.+
T Consensus 204 --------------------------------------------------~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 204 --------------------------------------------------DGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred --------------------------------------------------CCeEEEEEecCCcccCchhHHHHHHHHHHH
Confidence 235677888888999999999999999999
Q ss_pred HHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccC----CeeeEEEEehHHHHHHHHHHHHHHHHHHHH
Q psy7262 655 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE----GVDFYTSITRARFEELNADLFRGTMEPVEK 730 (840)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~e~e~~~~~~i~~i~~~i~~ 730 (840)
++.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++++|+++++.++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~ 313 (595)
T TIGR02350 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQ 313 (595)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888778888899999999999999999999998888876543 356889999999999999999999999999
Q ss_pred HHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccc
Q psy7262 731 SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPL 810 (840)
Q Consensus 731 ~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~ 810 (840)
+|+++++.+.+|+.|+||||+|++|+|++.|++.|+ .++....||++|||+|||++|+.+++. ++++.++|++|+
T Consensus 314 ~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~ 388 (595)
T TIGR02350 314 ALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPL 388 (595)
T ss_pred HHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeecccc
Confidence 999999999999999999999999999999999995 678888999999999999999999873 678899999999
Q ss_pred eeEEEeeCCeEEEccccCceEe
Q psy7262 811 SLGIETAGGVSYSQSQLGWLLI 832 (840)
Q Consensus 811 s~gi~~~~~~~~~~~~~~~~~~ 832 (840)
+||++..+|.+.++++.+..++
T Consensus 389 ~igi~~~~~~~~~ii~~~~~iP 410 (595)
T TIGR02350 389 SLGIETLGGVMTKLIERNTTIP 410 (595)
T ss_pred eeEEEecCCceEEEEeCCCcCC
Confidence 9999999998887765544433
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=566.85 Aligned_cols=401 Identities=41% Similarity=0.635 Sum_probs=351.2
Q ss_pred Ccccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCC-cEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHHH
Q psy7262 337 SHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414 (840)
Q Consensus 337 ~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~-~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~~ 414 (840)
++||| |||||+||++++|++++|+|..|++.+||+|+|.++ .+++|..|..++..+|.++++++|||+|+.+.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 36999 999999999999999999999999999999999855 899999999999999999999999999998766432
Q ss_pred hhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCC
Q psy7262 415 ADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYF 493 (840)
Q Consensus 415 ~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~ 493 (840)
...+||.+.. .++...+.+ .+ ..++|+++.+++|++|++.|+.+++..+ .++|||||++|
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~--~~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v-------------~~~VItVPa~f 140 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRT--VQ--GTVTPVEVSAEILKKLKQRAEESLGGDL-------------VGAVITVPAYF 140 (599)
T ss_pred --cccCCEEEEEcCCCceEEEe--CC--CEEcHHHHHHHHHHHHHHHHHHHhCCCc-------------ceEEEEECCCC
Confidence 5667898764 334444433 22 4789999999999999999999988765 89999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCcee
Q psy7262 494 NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNV 573 (840)
Q Consensus 494 ~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~ 573 (840)
++.||+++++||+.|||+.+++++||+|||++|+.... .+.++||+|+||||+|+|++++.
T Consensus 141 ~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-------~~~~vlV~DlGgGT~DvSi~~~~------------ 201 (599)
T TIGR01991 141 DDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA-------SEGIYAVYDLGGGTFDVSILKLT------------ 201 (599)
T ss_pred CHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC-------CCCEEEEEEcCCCeEEEEEEEEc------------
Confidence 99999999999999999999999999999999986643 45788999999999999888653
Q ss_pred EEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHH
Q psy7262 574 LIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653 (840)
Q Consensus 574 ~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~ 653 (840)
++.+++++..++..+||.+||.+|++++.
T Consensus 202 ---------------------------------------------------~~~~~vla~~gd~~lGG~d~D~~l~~~l~ 230 (599)
T TIGR01991 202 ---------------------------------------------------KGVFEVLATGGDSALGGDDFDHALAKWIL 230 (599)
T ss_pred ---------------------------------------------------CCeEEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 23467888889999999999999999998
Q ss_pred HHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHH
Q psy7262 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLR 733 (840)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~ 733 (840)
+++ +.+...+++.+.+|+.+||++|+.||....+.+.++. ++.++.+.|||++|+++++|+++++.++|.++|+
T Consensus 231 ~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~ 304 (599)
T TIGR01991 231 KQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALR 304 (599)
T ss_pred Hhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 3344567788889999999999999999988888864 5778999999999999999999999999999999
Q ss_pred HcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccceeE
Q psy7262 734 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLG 813 (840)
Q Consensus 734 ~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~s~g 813 (840)
++++.+.+|+.|+||||+|++|+|++.|++.| +..+....||++|||+|||++|+.+++ .+..+++.+.|++|++||
T Consensus 305 ~a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~--~~~~~~~~l~dv~p~slg 381 (599)
T TIGR01991 305 DAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAG--NRIGNDLLLLDVTPLSLG 381 (599)
T ss_pred HcCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhcc--ccccCceEEEEeeeeeeE
Confidence 99999999999999999999999999999999 455677889999999999999999997 445568999999999999
Q ss_pred EEeeCCeEEEccccCceEeeecc
Q psy7262 814 IETAGGVSYSQSQLGWLLIFYVC 836 (840)
Q Consensus 814 i~~~~~~~~~~~~~~~~~~~~~~ 836 (840)
+++.+|.+.++++.+..++..+.
T Consensus 382 i~~~~g~~~~ii~rnt~iP~~~~ 404 (599)
T TIGR01991 382 IETMGGLVEKIIPRNTPIPVARA 404 (599)
T ss_pred EEecCCEEEEEEeCCCcCCccce
Confidence 99999999988877666655443
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=563.21 Aligned_cols=409 Identities=52% Similarity=0.803 Sum_probs=359.3
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeC-CcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~-~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
.++||| |||||++|++++|.+.+|+|..|++++||+|+|.+ +++++|..|......+|.++++++|++||+.+.+ .
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 578999 99999999999999999999999999999999985 5799999999999999999999999999998754 3
Q ss_pred HhhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 414 QADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 414 ~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
......+||.+.. +++...+.+. ..+..++|+++.+++|++|++.|+.+++..+ .++|||||++
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~--~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v-------------~~~VItVPa~ 145 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECP--ALNKDFSPEEISAQVLRKLVEDASKYLGETV-------------TQAVITVPAY 145 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEe--cCCeEEcHHHHHHHHHHHHHHHHHHHhCCCC-------------CeEEEEECCC
Confidence 4455668998765 3344444433 3347899999999999999999999887755 7999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
|++.||+++++||+.|||+.+++++||+|||++|+.... .+.++||+|+||||+|+|+++++
T Consensus 146 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-------~~~~vlV~DlGgGT~DvSv~~~~----------- 207 (621)
T CHL00094 146 FNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK-------NNETILVFDLGGGTFDVSILEVG----------- 207 (621)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC-------CCCEEEEEEcCCCeEEEEEEEEc-----------
Confidence 999999999999999999999999999999999976532 45678999999999998887653
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
++.+++++..++..+||.+||.+|++++
T Consensus 208 ----------------------------------------------------~~~~~vla~~gd~~lGG~d~D~~l~~~~ 235 (621)
T CHL00094 208 ----------------------------------------------------DGVFEVLSTSGDTHLGGDDFDKKIVNWL 235 (621)
T ss_pred ----------------------------------------------------CCEEEEEEEecCCCcChHHHHHHHHHHH
Confidence 2356788888999999999999999999
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccC----CeeeEEEEehHHHHHHHHHHHHHHHHHH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE----GVDFYTSITRARFEELNADLFRGTMEPV 728 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~e~e~~~~~~i~~i~~~i 728 (840)
.++|+++++.++..+++.+.+|+.+||++|+.||....+.+.++.+.. +.++...|+|++|+++++++++++..+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 315 (621)
T CHL00094 236 IKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPV 315 (621)
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999998888878788899999999999999999999888888876542 2467889999999999999999999999
Q ss_pred HHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEec
Q psy7262 729 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 808 (840)
Q Consensus 729 ~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~ 808 (840)
+++|+++++.+.+|+.|+||||+|++|.|++.|++.| +..+....||++|||+|||++|+.+++ .++++.++|++
T Consensus 316 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~----~~~~~~~~d~~ 390 (621)
T CHL00094 316 ENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAG----EVKDILLLDVT 390 (621)
T ss_pred HHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcC----Cccceeeeeee
Confidence 9999999999999999999999999999999999999 566778889999999999999999987 35688999999
Q ss_pred cceeEEEeeCCeEEEccccCceEeeecc
Q psy7262 809 PLSLGIETAGGVSYSQSQLGWLLIFYVC 836 (840)
Q Consensus 809 ~~s~gi~~~~~~~~~~~~~~~~~~~~~~ 836 (840)
|++||++..+|.+.++++.+..++..++
T Consensus 391 ~~~lgi~~~~~~~~~ii~~~t~iP~~~~ 418 (621)
T CHL00094 391 PLSLGVETLGGVMTKIIPRNTTIPTKKS 418 (621)
T ss_pred ceeeeeeccCCEEEEEEeCCCccceeee
Confidence 9999999999999888877666554443
|
|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-61 Score=562.48 Aligned_cols=399 Identities=40% Similarity=0.633 Sum_probs=347.2
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~~ 414 (840)
.++||| |||||+||++.+|++++|+|..|++++||+|+|.++++++|..|..++..+|.++++++|+|+|+.+.+. +
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~--~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADI--Q 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh--h
Confidence 478999 9999999999999999999999999999999999888999999999999999999999999999987653 3
Q ss_pred hhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCC
Q psy7262 415 ADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYF 493 (840)
Q Consensus 415 ~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~ 493 (840)
.....+||.+.. .++...+.+ .+ ..++|+++.+++|++|++.++.++|..+ ..+|||||++|
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~--~~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v-------------~~~VITVPa~f 160 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRT--AQ--GLKSPVEVSAEILKALRQRAEETLGGEL-------------DGAVITVPAYF 160 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEe--cC--CeEcHHHHHHHHHHHHHHHHHHHhCCCc-------------ceEEEEECCCC
Confidence 335667888764 345544443 22 4789999999999999999999988755 89999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCcee
Q psy7262 494 NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNV 573 (840)
Q Consensus 494 ~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~ 573 (840)
++.||+++++||+.|||+.+++++||+|||++|+.... .+.++||+|+||||+|+|++++.
T Consensus 161 ~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-------~~~~vlV~DlGGGT~DvSv~~~~------------ 221 (616)
T PRK05183 161 DDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG-------QEGVIAVYDLGGGTFDISILRLS------------ 221 (616)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC-------CCCEEEEEECCCCeEEEEEEEee------------
Confidence 99999999999999999999999999999999976542 35688999999999998887653
Q ss_pred EEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHH
Q psy7262 574 LIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653 (840)
Q Consensus 574 ~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~ 653 (840)
++.+++++..++..+||.+||.+|++++.
T Consensus 222 ---------------------------------------------------~~~~evlat~gd~~lGG~d~D~~l~~~~~ 250 (616)
T PRK05183 222 ---------------------------------------------------KGVFEVLATGGDSALGGDDFDHLLADWIL 250 (616)
T ss_pred ---------------------------------------------------CCEEEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 23567888899999999999999999998
Q ss_pred HHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHH
Q psy7262 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLR 733 (840)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~ 733 (840)
++++ .+...+++.+.+|+.+||++|+.||....+.+.+... ...|||++|+++++|+++++.+++.++|+
T Consensus 251 ~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L~ 320 (616)
T PRK05183 251 EQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRALR 320 (616)
T ss_pred HHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7664 3333577888899999999999999999888887532 12499999999999999999999999999
Q ss_pred HcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccceeE
Q psy7262 734 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLG 813 (840)
Q Consensus 734 ~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~s~g 813 (840)
++++.+.+|+.|+||||+|++|+|++.|++.|+ ..+....||++|||+|||++|+.+++ .+..+++.+.|++|++||
T Consensus 321 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npdeaVA~GAAi~a~~l~~--~~~~~~~~l~dv~p~slg 397 (616)
T PRK05183 321 DAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG-RTPLTSIDPDKVVAIGAAIQADILAG--NKPDSDMLLLDVIPLSLG 397 (616)
T ss_pred HcCCCcccCCEEEEECCcccChHHHHHHHHHhc-cCcCcCCCchHHHHHHHHHHHHHhcc--ccccCceEEEeecccccc
Confidence 999999999999999999999999999999994 45667889999999999999999997 344578999999999999
Q ss_pred EEeeCCeEEEccccCceEeeecc
Q psy7262 814 IETAGGVSYSQSQLGWLLIFYVC 836 (840)
Q Consensus 814 i~~~~~~~~~~~~~~~~~~~~~~ 836 (840)
+++.+|.+.++++.+..++..++
T Consensus 398 i~~~~g~~~~ii~r~t~iP~~~~ 420 (616)
T PRK05183 398 LETMGGLVEKIIPRNTTIPVARA 420 (616)
T ss_pred ceecCCeEEEEEeCCCccccccc
Confidence 99999999988877666665553
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=572.47 Aligned_cols=413 Identities=51% Similarity=0.814 Sum_probs=363.9
Q ss_pred Ccccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHHHh
Q psy7262 337 SHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQA 415 (840)
Q Consensus 337 ~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~~~ 415 (840)
++||| |||+++||++.+|.+++|.|..|+|++||+|+|.++++++|..|...+.++|+++++++|+|||+.+.+..++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 47999 99999999999999999999999999999999999899999999999999999999999999999999988888
Q ss_pred hcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCC
Q psy7262 416 DMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFN 494 (840)
Q Consensus 416 ~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~ 494 (840)
....+||.+.. .++...+.+.+.+....++|+++++++|++|++.++.+++..+ .++|||||++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~-------------~~~vitVPa~~~ 147 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKV-------------TDVVITVPAYFT 147 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBE-------------EEEEEEE-TT--
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhccccc-------------ccceeeechhhh
Confidence 88899999875 4888889999888888999999999999999999999998765 799999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeE
Q psy7262 495 DSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVL 574 (840)
Q Consensus 495 ~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~ 574 (840)
+.||++|++||+.|||+.+.+++||+|||++|++.... .+..+||+|+||||+|+|++++.
T Consensus 148 ~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~------~~~~vlv~D~Gggt~dvs~~~~~------------- 208 (602)
T PF00012_consen 148 DEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD------KGKTVLVVDFGGGTFDVSVVEFS------------- 208 (602)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS------SEEEEEEEEEESSEEEEEEEEEE-------------
T ss_pred hhhhhcccccccccccccceeecccccccccccccccc------cccceeccccccceEeeeehhcc-------------
Confidence 99999999999999999999999999999999776542 56778888888888888877643
Q ss_pred EEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHH
Q psy7262 575 IFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 654 (840)
Q Consensus 575 ~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~ 654 (840)
++.+++++..++..+||.+||.+|++++.+
T Consensus 209 --------------------------------------------------~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 209 --------------------------------------------------NGQFEVLATAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp --------------------------------------------------TTEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------cccccccccccccccccceecceeeccccc
Confidence 345677788888999999999999999999
Q ss_pred HHHHhccCCccccHHHHHHHHHHHHHHHHHcCC--CCeeEEEEecccC-CeeeEEEEehHHHHHHHHHHHHHHHHHHHHH
Q psy7262 655 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSS--STQASIEIDSLFE-GVDFYTSITRARFEELNADLFRGTMEPVEKS 731 (840)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~i~i~~~~~-~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~ 731 (840)
+++.+++.+...+++.+.+|+.+||++|+.||. .....+.++.+.+ +.++.+.|+|++|+++++|+++++.++|.++
T Consensus 239 ~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~ 318 (602)
T PF00012_consen 239 KFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKA 318 (602)
T ss_dssp HHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccc
Confidence 999888888888899999999999999999999 6677778877776 7899999999999999999999999999999
Q ss_pred HHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccce
Q psy7262 732 LRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLS 811 (840)
Q Consensus 732 l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~s 811 (840)
|++++....+|+.|+|+||+|++|+|++.|++.|+ ..+..+.||++|||+|||++|+.+++ .+...++.+.|++|++
T Consensus 319 l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~d~~~~~ 395 (602)
T PF00012_consen 319 LKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSG--SFRVKDIKIIDVTPFS 395 (602)
T ss_dssp HHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHT--SCSSTSSCESEBESSE
T ss_pred cccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcc--cccccccccccccccc
Confidence 99999999999999999999999999999999996 77888899999999999999999998 5777889999999999
Q ss_pred eEEEeeCCeEEEccccCceEeee
Q psy7262 812 LGIETAGGVSYSQSQLGWLLIFY 834 (840)
Q Consensus 812 ~gi~~~~~~~~~~~~~~~~~~~~ 834 (840)
|||+..++.+..+++.+..++..
T Consensus 396 ~~i~~~~~~~~~ii~~~t~iP~~ 418 (602)
T PF00012_consen 396 IGIEVSNGKFSKIIPKNTPIPSK 418 (602)
T ss_dssp EEEEETTTEEEEEESTTEBSSEE
T ss_pred ccccccccccccccccccccccc
Confidence 99999999888888776555443
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-60 Score=529.45 Aligned_cols=424 Identities=77% Similarity=1.093 Sum_probs=389.9
Q ss_pred ccCCCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCCh
Q psy7262 333 NFIPSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDA 411 (840)
Q Consensus 333 ~~~~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~ 411 (840)
+..+.+||| |||++||+++..|.++++.|..|++++||+|+|.++++++|.+|..+...+|.+++..+|+++|+.++++
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~ 84 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDP 84 (620)
T ss_pred cccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccch
Confidence 345688999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeC
Q psy7262 412 TVQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVP 490 (840)
Q Consensus 412 ~~~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVP 490 (840)
.++...++|||.+.. .++.+.+.+.+.++...++|+++.++.|.+++..++.++|..+ ..+|+|||
T Consensus 85 ~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v-------------~~aviTVP 151 (620)
T KOG0101|consen 85 EVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTV-------------KKAVVTVP 151 (620)
T ss_pred hhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCce-------------eeEEEEec
Confidence 999999999999884 5668999999999999999999999999999999999999876 89999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCC
Q psy7262 491 AYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGE 570 (840)
Q Consensus 491 a~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~ 570 (840)
++|++.||+++.+|+..|||+.+++++||+|||++|++.+. ...+.+|||.|+||||+|+|++
T Consensus 152 a~F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~-----~~~~~~VlI~DlGggtfdvs~l------------ 214 (620)
T KOG0101|consen 152 AYFNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKK-----VLGERNVLIFDLGGGTFDVSVL------------ 214 (620)
T ss_pred CCcCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhcccc-----ccceeeEEEEEcCCCceeeeeE------------
Confidence 99999999999999999999999999999999999986544 2245555555555555555554
Q ss_pred ceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHH
Q psy7262 571 RNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVN 650 (840)
Q Consensus 571 ~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~ 650 (840)
.+.++.+.+++..++.++||++||+.+.+
T Consensus 215 ---------------------------------------------------~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 215 ---------------------------------------------------SLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred ---------------------------------------------------EeccchhhhhhhcccccccchhhhHHHHH
Confidence 44445678889999999999999999999
Q ss_pred HHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHH
Q psy7262 651 HFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEK 730 (840)
Q Consensus 651 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~ 730 (840)
|+..+|+++++.++..+++...+|+.+||.+|+.||....+++.++++.++.++...|+|.+|+.++.+++..+..++..
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~ 323 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEK 323 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccc
Q psy7262 731 SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPL 810 (840)
Q Consensus 731 ~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~ 810 (840)
+|+++.++..+|+.|+||||++++|.++..+++.|++..+....||+++||+|||++|+.+++.....+.++++.|+.|+
T Consensus 324 ~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl 403 (620)
T KOG0101|consen 324 ALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPL 403 (620)
T ss_pred HHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccc
Confidence 99999999999999999999999999999999999888889999999999999999999999988888899999999999
Q ss_pred eeEEEeeCCeEEEccccCceEeeeccC
Q psy7262 811 SLGIETAGGVSYSQSQLGWLLIFYVCN 837 (840)
Q Consensus 811 s~gi~~~~~~~~~~~~~~~~~~~~~~~ 837 (840)
++||++.++.+.++.+.+..+.--++.
T Consensus 404 ~~gve~a~~~~~~~i~~~t~~P~~k~~ 430 (620)
T KOG0101|consen 404 SLGVETAGGVFTVLIPRNTSIPTKKTQ 430 (620)
T ss_pred cccccccCCcceeeeecccccceeeee
Confidence 999999999988888765555444443
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-58 Score=531.94 Aligned_cols=390 Identities=57% Similarity=0.841 Sum_probs=350.9
Q ss_pred CCcccc-ccceEEEEEEECC-eEEEEEcCCCCcccceEEEeeCC-cEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChH
Q psy7262 336 PSHPVS-FITSALQGVFQHG-KVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g-~~~ii~~~~g~~~iPS~V~f~~~-~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~ 412 (840)
..+||| ||||||||+++++ .+.+++|..|.|.+||+|+|.++ ++++|..|..++..+|.+++..+|+++|+...
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~--- 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN--- 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC---
Confidence 467999 9999999999988 79999999999999999999966 59999999999999999999999999997611
Q ss_pred HHhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 413 VQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 413 ~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
...+.+...+ +.++|+++.+++|++|++.++.+++..+ ..+|||||++
T Consensus 83 -----------------~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v-------------~~~VItVPay 130 (579)
T COG0443 83 -----------------GLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKV-------------TDAVITVPAY 130 (579)
T ss_pred -----------------CCcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCc-------------ceEEEEeCCC
Confidence 0011222333 7899999999999999999999999866 8999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
|++.||+++++|++.|||+.+++++||+|||++|+++.. .+.+|||+|+||||+|+|++++.
T Consensus 131 F~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~-------~~~~vlV~DlGGGTfDvSll~~~----------- 192 (579)
T COG0443 131 FNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG-------KEKTVLVYDLGGGTFDVSLLEIG----------- 192 (579)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC-------CCcEEEEEEcCCCCEEEEEEEEc-----------
Confidence 999999999999999999999999999999999988765 67789999999999999888754
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
.+.+++++..++.++||++||.+|.+++
T Consensus 193 ----------------------------------------------------~g~~ev~at~gd~~LGGddfD~~l~~~~ 220 (579)
T COG0443 193 ----------------------------------------------------DGVFEVLATGGDNHLGGDDFDNALIDYL 220 (579)
T ss_pred ----------------------------------------------------CCEEEEeecCCCcccCchhHHHHHHHHH
Confidence 2357889999999999999999999999
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSL 732 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l 732 (840)
..+|..+.+.++..+++...+|..+||++|+.||...++.+.++....+.++...|+|++|++++.+++.++...+.+++
T Consensus 221 ~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al 300 (579)
T COG0443 221 VMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQAL 300 (579)
T ss_pred HHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888899999999999999999999999999999998777766788999999999999999999999999999
Q ss_pred HHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEecccee
Q psy7262 733 RDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSL 812 (840)
Q Consensus 733 ~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~s~ 812 (840)
.++++...+|+.|+||||++|+|.|++.+++.|+ .++....||+++||.|||++|+.+++... +++..|++|+++
T Consensus 301 ~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~~----d~ll~Dv~plsl 375 (579)
T COG0443 301 KDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSL 375 (579)
T ss_pred HHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCccc----CceEEeeeeecc
Confidence 9999999999999999999999999999999995 77888899999999999999999998432 889999999999
Q ss_pred EEEeeCCeEEEccccCceEeeec
Q psy7262 813 GIETAGGVSYSQSQLGWLLIFYV 835 (840)
Q Consensus 813 gi~~~~~~~~~~~~~~~~~~~~~ 835 (840)
|+++.++++.++++.+-.+...+
T Consensus 376 gie~~~~~~~~ii~rn~~iP~~~ 398 (579)
T COG0443 376 GIETLGGVRTPIIERNTTIPVKK 398 (579)
T ss_pred ccccCcchhhhHHhcCCCCCccc
Confidence 99999998888886554444333
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-57 Score=527.36 Aligned_cols=377 Identities=33% Similarity=0.489 Sum_probs=311.2
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~~ 414 (840)
.++||| |||||+||++.+|++++|+|..|++++||+|+|.++++++|..| +++++||++|+.+.+....
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 478999 99999999999999999999999999999999998889999987 7899999999987652111
Q ss_pred hhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCC
Q psy7262 415 ADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFN 494 (840)
Q Consensus 415 ~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~ 494 (840)
............ .+...+.+... +..++|+++.+++|++|++.|+.++|..+ .++|||||++|+
T Consensus 90 ~~~~~~~k~~~~-~~~~~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v-------------~~aVITVPa~f~ 153 (595)
T PRK01433 90 PALFSLVKDYLD-VNSSELKLNFA--NKQLRIPEIAAEIFIYLKNQAEEQLKTNI-------------TKAVITVPAHFN 153 (595)
T ss_pred hhhHhhhhheee-cCCCeeEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCc-------------ceEEEEECCCCC
Confidence 000000001111 12223334443 47899999999999999999999998765 899999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeE
Q psy7262 495 DSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVL 574 (840)
Q Consensus 495 ~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~ 574 (840)
+.||+++++||+.|||+.+++++||+|||++|+.... .+..+||+|+||||+|+|++++.
T Consensus 154 ~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-------~~~~vlV~DlGGGT~DvSi~~~~------------- 213 (595)
T PRK01433 154 DAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN-------QKGCYLVYDLGGGTFDVSILNIQ------------- 213 (595)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC-------CCCEEEEEECCCCcEEEEEEEEe-------------
Confidence 9999999999999999999999999999999976542 34578888888888888887643
Q ss_pred EEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHH
Q psy7262 575 IFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 654 (840)
Q Consensus 575 ~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~ 654 (840)
++.+++++..++..+||.+||.+|.+++.+
T Consensus 214 --------------------------------------------------~~~~~V~at~gd~~lGG~d~D~~l~~~~~~ 243 (595)
T PRK01433 214 --------------------------------------------------EGIFQVIATNGDNMLGGNDIDVVITQYLCN 243 (595)
T ss_pred --------------------------------------------------CCeEEEEEEcCCcccChHHHHHHHHHHHHH
Confidence 345678899999999999999999999997
Q ss_pred HHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7262 655 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRD 734 (840)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~~ 734 (840)
++... .+. +.+..||++|+.||....... ..+.|||++|+++++|+++++.++++++|++
T Consensus 244 ~~~~~------~~~----~~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~ 303 (595)
T PRK01433 244 KFDLP------NSI----DTLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQECLEQ 303 (595)
T ss_pred hcCCC------CCH----HHHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 76321 122 233459999999998765321 1688999999999999999999999999999
Q ss_pred cCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccceeEE
Q psy7262 735 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGI 814 (840)
Q Consensus 735 a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~s~gi 814 (840)
++ ..+|+.|+||||+|++|+|++.|++.| +.++..+.||++|||+|||++|+.+++. ..+++++|++|+++|+
T Consensus 304 a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgi 376 (595)
T PRK01433 304 AG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPLSLGM 376 (595)
T ss_pred cC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEecccceEE
Confidence 98 568999999999999999999999999 5667778899999999999999999862 2478899999999999
Q ss_pred EeeCCeEEEccccCceEeeec
Q psy7262 815 ETAGGVSYSQSQLGWLLIFYV 835 (840)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~ 835 (840)
++.+|.+.++++.+..++..+
T Consensus 377 ~~~~g~~~~ii~rnt~iP~~~ 397 (595)
T PRK01433 377 ELYGGIVEKIIMRNTPIPISV 397 (595)
T ss_pred EecCCEEEEEEECCCccccee
Confidence 999999999887776666543
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=493.50 Aligned_cols=414 Identities=54% Similarity=0.797 Sum_probs=373.5
Q ss_pred ccCCCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEee-CCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCC
Q psy7262 333 NFIPSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFED 410 (840)
Q Consensus 333 ~~~~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~-~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~ 410 (840)
....++||| |||+|||++..++.+.++.|..|.|++||+|+|. +..+++|..|+++...+|+++++.-|+++|+.+.+
T Consensus 25 ~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d 104 (640)
T KOG0102|consen 25 VKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDD 104 (640)
T ss_pred CCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccC
Confidence 345689999 9999999999999999999999999999999997 55999999999999999999999999999999999
Q ss_pred hHHHhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeC
Q psy7262 411 ATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVP 490 (840)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVP 490 (840)
+.+++..+.+||.++. ..+..+.++. .+..++|.++.++.|.+++.+|+++++... ...|+|||
T Consensus 105 ~evq~~~k~vpyKiVk-~~ngdaw~e~--~G~~~spsqig~~vl~kmk~tae~yl~~~v-------------~~avvtvp 168 (640)
T KOG0102|consen 105 PEVQKDIKQVPYKIVK-ASNGDAWVEA--RGKQYSPSQIGAFVLMKMKETAEAYLGKKV-------------KNAVITVP 168 (640)
T ss_pred HHHHHHHHhCCcceEE-ccCCcEEEEe--CCeEecHHHHHHHHHHHHHHHHHHHcCchh-------------hheeeccH
Confidence 9999999999999987 4444555555 559999999999999999999999999866 89999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCC
Q psy7262 491 AYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGE 570 (840)
Q Consensus 491 a~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~ 570 (840)
+||++.||++..+|.++||++++++++||+|||+.|+++.. ....
T Consensus 169 AyfndsqRqaTkdag~iagl~vlrvineptaaalaygld~k-------~~g~---------------------------- 213 (640)
T KOG0102|consen 169 AYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKK-------EDGV---------------------------- 213 (640)
T ss_pred HHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhccccc-------CCCc----------------------------
Confidence 99999999999999999999999999999999999988764 2234
Q ss_pred ceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHH
Q psy7262 571 RNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVN 650 (840)
Q Consensus 571 ~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~ 650 (840)
++|||+||||||+++..+.++.|++.+..++.++||++||..+.+
T Consensus 214 -----------------------------------iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~ 258 (640)
T KOG0102|consen 214 -----------------------------------IAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVR 258 (640)
T ss_pred -----------------------------------eEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHH
Confidence 445555555555555566778899999999999999999999999
Q ss_pred HHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCC----eeeEEEEehHHHHHHHHHHHHHHHH
Q psy7262 651 HFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTME 726 (840)
Q Consensus 651 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~e~e~~~~~~i~~i~~ 726 (840)
++...|+...+.++..+.+++.||..++|++|+.||......+.++.+..+ ..+++++||.+|++++.++|++.++
T Consensus 259 ~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~ 338 (640)
T KOG0102|consen 259 FIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIE 338 (640)
T ss_pred HHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhh
Confidence 999999998899999999999999999999999999999999888876654 5688999999999999999999999
Q ss_pred HHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEE
Q psy7262 727 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLD 806 (840)
Q Consensus 727 ~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d 806 (840)
.+..+|++|++...+|+.|+|+||++|+|.+++.|++.| +.......||+++||.|||+++..+.+ .++++.+.|
T Consensus 339 p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~g----eVkdvlLLd 413 (640)
T KOG0102|consen 339 PCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSG----EVKDVLLLD 413 (640)
T ss_pred HHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhc----cccceeeee
Confidence 999999999999999999999999999999999999999 666667789999999999999999988 689999999
Q ss_pred eccceeEEEeeCCeEEEccccCceEeeeccC
Q psy7262 807 VTPLSLGIETAGGVSYSQSQLGWLLIFYVCN 837 (840)
Q Consensus 807 ~~~~s~gi~~~~~~~~~~~~~~~~~~~~~~~ 837 (840)
|.|+++|||+.||++-+.++.+-.|..-+..
T Consensus 414 VtpLsLgietlggvft~Li~rnttIptkksq 444 (640)
T KOG0102|consen 414 VTPLSLGIETLGGVFTKLIPRNTTIPTKKSQ 444 (640)
T ss_pred cchHHHHHHhhhhhheecccCCcccCchhhh
Confidence 9999999999999999999877666554443
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-57 Score=501.91 Aligned_cols=426 Identities=43% Similarity=0.657 Sum_probs=391.6
Q ss_pred CCccccccceEE-EEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHHH
Q psy7262 336 PSHPVSFITSAL-QGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414 (840)
Q Consensus 336 ~~~gIDGtT~s~-va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~~ 414 (840)
+++|||+|..+| +|+.+.|.+++|.|+.++|.+|++|+|.++.|++|.+|..+...++.+++..+||++|+.+.++.++
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 388999555555 6888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCC
Q psy7262 415 ADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYF 493 (840)
Q Consensus 415 ~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~ 493 (840)
...+.+|+.++. .++...+.+.|.|+...++|++|+||||.+|++.++..+..++ .++||+||++|
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v-------------~DcvIavP~~F 148 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPV-------------SDCVIAVPSYF 148 (727)
T ss_pred hcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCC-------------CCeeEeccccc
Confidence 999999999875 8999999999999999999999999999999999999887655 89999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCcee
Q psy7262 494 NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNV 573 (840)
Q Consensus 494 ~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~ 573 (840)
++.||+++.+||+.|||+.+++++|-+|+|+.|+..+..-.
T Consensus 149 Td~qRravldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP--------------------------------------- 189 (727)
T KOG0103|consen 149 TDSQRRAVLDAARIAGLNPLRLMNDTTATALAYGIYKTDLP--------------------------------------- 189 (727)
T ss_pred cHHHHHHHHhHHhhcCccceeeeecchHhHhhcccccccCC---------------------------------------
Confidence 99999999999999999999999999999999988764211
Q ss_pred EEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHH
Q psy7262 574 LIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653 (840)
Q Consensus 574 ~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~ 653 (840)
+....+++++.+|+|..++.+++..+..+.+.+++...+..+||++||++|.+|+.
T Consensus 190 ------------------------~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa 245 (727)
T KOG0103|consen 190 ------------------------ENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFA 245 (727)
T ss_pred ------------------------CcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHH
Confidence 01133566888888888888888899999999999999999999999999999999
Q ss_pred HHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHH
Q psy7262 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLR 733 (840)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~ 733 (840)
.+|+.+++.+...++++..||...||+.|+.||++....++|+++.++.|.+-.|+|++|++++.|+++++...+..+|+
T Consensus 246 ~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~ 325 (727)
T KOG0103|consen 246 KEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALA 325 (727)
T ss_pred HHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccceeE
Q psy7262 734 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLG 813 (840)
Q Consensus 734 ~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~s~g 813 (840)
++++...+|+.|.+|||+||+|.|++.|.+.| +..+.+++|.++|||+||||.+|++++ .++++.+.++|+.||++.
T Consensus 326 d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP--~frVRef~v~Di~pysIs 402 (727)
T KOG0103|consen 326 DAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSP--TFRVREFSVEDIVPYSIS 402 (727)
T ss_pred HhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCc--cccceecceecccceeEE
Confidence 99999999999999999999999999999999 889999999999999999999999999 899999999999999997
Q ss_pred EE--eeC---C----eEEEc--cccCceEeeeccCCCC
Q psy7262 814 IE--TAG---G----VSYSQ--SQLGWLLIFYVCNPFE 840 (840)
Q Consensus 814 i~--~~~---~----~~~~~--~~~~~~~~~~~~~~~~ 840 (840)
++ ..+ + +++.- +|..|.|+|+|++||.
T Consensus 403 ~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~F~ 440 (727)
T KOG0103|consen 403 LRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGPFT 440 (727)
T ss_pred EEeccccccCCCceeeecCCCCCCCceEEEEEecCceE
Confidence 76 221 1 12222 3678999999999994
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=451.04 Aligned_cols=414 Identities=33% Similarity=0.509 Sum_probs=368.6
Q ss_pred CCCcccc-ccceEEEEEEECCe-EEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChH
Q psy7262 335 IPSHPVS-FITSALQGVFQHGK-VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412 (840)
Q Consensus 335 ~~~~gID-GtT~s~va~~~~g~-~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~ 412 (840)
..+++|| |+-+.-|+++.||- .+|+.|..++|++|++|+|.+++|+||.+|.....++|+.++..++.+||++..++.
T Consensus 22 ~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~ 101 (902)
T KOG0104|consen 22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPT 101 (902)
T ss_pred hhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcH
Confidence 4477999 88888899999986 578999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhcccCCee-EeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCC
Q psy7262 413 VQADMKHWPFE-VVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPA 491 (840)
Q Consensus 413 ~~~~~~~~p~~-~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa 491 (840)
+....+++||. ++.+..+..+.+.+++ ...+++++++||+|.+.+..|+.+...++ .++|||||.
T Consensus 102 v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~I-------------kd~ViTVP~ 167 (902)
T KOG0104|consen 102 VDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPI-------------KDMVITVPP 167 (902)
T ss_pred HHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcch-------------hheEEeCCc
Confidence 88888888875 4444467777777666 68899999999999999999999988765 899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCc
Q psy7262 492 YFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGER 571 (840)
Q Consensus 492 ~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~ 571 (840)
+|++.+|+++.+||++||++.+.+|+|..|||+.|++.++ ........+++|+|+|.|.|-.+++.+..---...
T Consensus 168 ~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rR--k~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~--- 242 (902)
T KOG0104|consen 168 FFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRR--KEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQ--- 242 (902)
T ss_pred ccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhcc--ccCCCCceEEEEEecCCCceeEEEEEEEeeccccc---
Confidence 9999999999999999999999999999999999999875 33445678889999999999888876541000000
Q ss_pred eeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHH
Q psy7262 572 NVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH 651 (840)
Q Consensus 572 ~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~ 651 (840)
| .....++++..+.+..+||..+..+|.++
T Consensus 243 ----------------------------------------g----------~~~p~i~~~gvGfd~tLGG~e~~~rLr~~ 272 (902)
T KOG0104|consen 243 ----------------------------------------G----------GKQPQIQVLGVGFDRTLGGLEMTMRLRDH 272 (902)
T ss_pred ----------------------------------------c----------CccceEEEEeeccCCccchHHHHHHHHHH
Confidence 0 01235677788888999999999999999
Q ss_pred HHHHHHHhccC--CccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHH
Q psy7262 652 FVQEFKRKYKK--DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVE 729 (840)
Q Consensus 652 l~~~~~~~~~~--~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~ 729 (840)
|.+.|.+.++. ++..++|++.+|.++|+++|..||.+.++...|+++.++.|+...|||++|+++|+++..++..+|.
T Consensus 273 l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~ 352 (902)
T KOG0104|consen 273 LANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPIN 352 (902)
T ss_pred HHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHH
Confidence 99999877654 5778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEecc
Q psy7262 730 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTP 809 (840)
Q Consensus 730 ~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~ 809 (840)
++|..++++.++|+.|+|.||++|+|.||+.|.+..+..++...+|.++|+++||+++||.|+. +|.++.+.+.|.++
T Consensus 353 dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk--sFKvKpf~V~D~~~ 430 (902)
T KOG0104|consen 353 DALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK--SFKVKPFNVVDASV 430 (902)
T ss_pred HHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcc--cccccceeeeeccc
Confidence 9999999999999999999999999999999999998889999999999999999999999997 99999999999999
Q ss_pred ceeEEEeeCC
Q psy7262 810 LSLGIETAGG 819 (840)
Q Consensus 810 ~s~gi~~~~~ 819 (840)
|+|-++-.+.
T Consensus 431 yp~~v~f~~~ 440 (902)
T KOG0104|consen 431 YPYLVEFETE 440 (902)
T ss_pred ccEEEEeccC
Confidence 9888776654
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=447.79 Aligned_cols=343 Identities=23% Similarity=0.312 Sum_probs=281.3
Q ss_pred Ccccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEee----------------------------------------
Q psy7262 337 SHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFT---------------------------------------- 375 (840)
Q Consensus 337 ~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~---------------------------------------- 375 (840)
++||| |||||+||++++|++++|+++.|++.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 46999 9999999999999999999999999999999994
Q ss_pred -CCcEEEcHHHHHHHHhCcCch--hhhhhHhcCCCCCChHHHhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHH
Q psy7262 376 -DTERLIGDAAKNQVAMNPNNT--IFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSM 452 (840)
Q Consensus 376 -~~~~~~G~~A~~~~~~~p~~~--i~~~K~llg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~ 452 (840)
++..++|.+|+.++..+|..+ +.++|++||...... .....+++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~-----------------------------~~~~~~e~l~a~ 132 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP-----------------------------QQVALFEDLVCA 132 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc-----------------------------cceeCHHHHHHH
Confidence 446789999999988888877 789999999653110 122348899999
Q ss_pred HHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCC-----HHHHHH---HHHHHHHcCCcEEEeecchHHHHH
Q psy7262 453 VLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFN-----DSQRQA---TKDSGTIAGLNVLRIINEPTAAAI 524 (840)
Q Consensus 453 ~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~-----~~~r~~---l~~Aa~~AG~~~v~~v~Ep~AAAl 524 (840)
+|++|++.++.++|.++ .++|||||++|+ +.||++ |++||+.|||+.+.|++||+|||+
T Consensus 133 iL~~lk~~ae~~~g~~v-------------~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl 199 (450)
T PRK11678 133 MMLHIKQQAEAQLQAAI-------------TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGL 199 (450)
T ss_pred HHHHHHHHHHHHhCCCC-------------CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHH
Confidence 99999999999988765 899999999998 777765 799999999999999999999999
Q ss_pred HhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCc
Q psy7262 525 AYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGER 604 (840)
Q Consensus 525 ~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~ 604 (840)
+|+... ..++++||+|+||||+|+|+++++++...
T Consensus 200 ~y~~~~-------~~~~~vlV~D~GGGT~D~Svv~~~~~~~~-------------------------------------- 234 (450)
T PRK11678 200 DFEATL-------TEEKRVLVVDIGGGTTDCSMLLMGPSWRG-------------------------------------- 234 (450)
T ss_pred Hhcccc-------CCCCeEEEEEeCCCeEEEEEEEecCcccc--------------------------------------
Confidence 996532 25788999999999999999987532000
Q ss_pred eEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHH-HHHHHHHHHh----ccCC--------------c-
Q psy7262 605 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-NHFVQEFKRK----YKKD--------------L- 664 (840)
Q Consensus 605 ~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~-~~l~~~~~~~----~~~~--------------~- 664 (840)
......++++..+ ..+||.+||..|+ +++...+... .+.+ +
T Consensus 235 ------------------~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~ 295 (450)
T PRK11678 235 ------------------RADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVP 295 (450)
T ss_pred ------------------cCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccc
Confidence 0112345677776 6899999999998 5777766411 1100 0
Q ss_pred --------------------cccHHHH------------HHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHH
Q psy7262 665 --------------------TTNKRAL------------RRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRAR 712 (840)
Q Consensus 665 --------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e 712 (840)
..+++.. .+|+.+||++|+.||..+.+.+.++.+.. ++.+.|+|++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~~--~~~~~ItR~e 373 (450)
T PRK11678 296 AQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISD--GLATEISQQG 373 (450)
T ss_pred hhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccCC--CcceeeCHHH
Confidence 0122222 36889999999999999999998886544 5779999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHH
Q psy7262 713 FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 791 (840)
Q Consensus 713 ~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l 791 (840)
|+++++++++++.++|+++|+++++. ++.|+||||+|++|.|++.|++.||..++. ..+|..+||.|+|++|..+
T Consensus 374 fe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 374 LEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHHHHHHHHhh
Confidence 99999999999999999999999876 479999999999999999999999777665 4599999999999999754
|
|
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=330.27 Aligned_cols=210 Identities=64% Similarity=0.996 Sum_probs=203.9
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|++||||||.||++|++.|+|+.|+|..+.|++|+||+...++|+.||+|.+.||||+|+|.|+|+|||++|.||||+|+
T Consensus 440 MTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~Vs 519 (663)
T KOG0100|consen 440 MTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVS 519 (663)
T ss_pred eeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEccCceEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccc-hhhhccCCHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVED-EKLKDKISDAERT 159 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~-~~~~~~~~~~e~~ 159 (840)
+.++.++++..++|++..++|++++|++|++++++|+++|+..+++.+++|+||+|.|.+++.+.+ +++...+++++++
T Consensus 520 AeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe 599 (663)
T KOG0100|consen 520 AEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKE 599 (663)
T ss_pred eeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 4699999999999
Q ss_pred HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q psy7262 160 QILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPV 210 (840)
Q Consensus 160 ~l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~~~~~~~ 210 (840)
.++.++++..+||+++.++++++|++++++|...+.||..++|+..++++.
T Consensus 600 ~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~~~~ 650 (663)
T KOG0100|consen 600 TIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGGAPE 650 (663)
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Confidence 999999999999999999999999999999999999999999997666653
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=304.81 Aligned_cols=307 Identities=21% Similarity=0.324 Sum_probs=229.4
Q ss_pred cccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCC---cEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 338 HPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDT---ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 338 ~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~---~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
+||| |||++.++.. ++..++. .||+|+|+.+ -..+|.+|.....+.|.+.... +
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~------- 63 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------R------- 63 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------c-------
Confidence 7999 7777777665 4444443 5999999943 3479999988866666654421 1
Q ss_pred HhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCC
Q psy7262 414 QADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYF 493 (840)
Q Consensus 414 ~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~ 493 (840)
|+. ...+...++...+|+++.+.+...... ....+|+|||++|
T Consensus 64 -------pi~-----------------~G~i~d~~~~~~~l~~~~~~~~~~~~~-------------~~p~~vitvP~~~ 106 (336)
T PRK13928 64 -------PLR-----------------DGVIADYDVTEKMLKYFINKACGKRFF-------------SKPRIMICIPTGI 106 (336)
T ss_pred -------cCC-----------------CCeEecHHHHHHHHHHHHHHHhccCCC-------------CCCeEEEEeCCCC
Confidence 110 011223366777788877554221111 1147999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCcee
Q psy7262 494 NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNV 573 (840)
Q Consensus 494 ~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~ 573 (840)
+..+|+++++|++.||++.+.+++||.|||++|+.... .+..++|+|+||||||+++++.+..
T Consensus 107 ~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-------~~~~~lVvDiGggttdvsvv~~g~~---------- 169 (336)
T PRK13928 107 TSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS-------QPSGNMVVDIGGGTTDIAVLSLGGI---------- 169 (336)
T ss_pred CHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc-------CCCeEEEEEeCCCeEEEEEEEeCCE----------
Confidence 99999999999999999999999999999999976432 4566899999999999999875320
Q ss_pred EEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHH
Q psy7262 574 LIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653 (840)
Q Consensus 574 ~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~ 653 (840)
...++..+||.+||..|++++.
T Consensus 170 ----------------------------------------------------------~~~~~~~lGG~did~~i~~~l~ 191 (336)
T PRK13928 170 ----------------------------------------------------------VTSSSIKVAGDKFDEAIIRYIR 191 (336)
T ss_pred ----------------------------------------------------------EEeCCcCCHHHHHHHHHHHHHH
Confidence 0112468999999999999998
Q ss_pred HHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCC----eeEEEEec--ccCCeeeEEEEehHHHHHHHHHHHHHHHHH
Q psy7262 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST----QASIEIDS--LFEGVDFYTSITRARFEELNADLFRGTMEP 727 (840)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~~--~~~~~~~~~~itr~e~e~~~~~~i~~i~~~ 727 (840)
++++.... ...||++|+.++... ...+.+.. ...+.+..+.|++++|++++.+.++++.+.
T Consensus 192 ~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~ 258 (336)
T PRK13928 192 KKYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQA 258 (336)
T ss_pred HHhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHH
Confidence 66542111 246889999886531 23333321 233456678999999999999999999999
Q ss_pred HHHHHHHcC--CCccCcc-EEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHc
Q psy7262 728 VEKSLRDAK--MDKAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 792 (840)
Q Consensus 728 i~~~l~~a~--~~~~~Id-~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~ 792 (840)
|.+.|+.++ +....++ .|+|+||+|++|.|++.+++.| +.++....||++|||+|||+++..+.
T Consensus 259 i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~~ 325 (336)
T PRK13928 259 VKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENID 325 (336)
T ss_pred HHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhchH
Confidence 999999986 4455677 7999999999999999999999 67787888999999999999987643
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=301.49 Aligned_cols=306 Identities=21% Similarity=0.345 Sum_probs=233.9
Q ss_pred Ccccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCC-c--EEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChH
Q psy7262 337 SHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDT-E--RLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412 (840)
Q Consensus 337 ~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~-~--~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~ 412 (840)
.+||| |||++. ++.+++.. +.|+ ||+|+|+++ . .++|.+|..+..+.|.++... + +..+
T Consensus 6 ~~giDlGt~~~~--i~~~~~~~-~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi~~-- 68 (335)
T PRK13929 6 EIGIDLGTANIL--VYSKNKGI-ILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PMKD-- 68 (335)
T ss_pred eEEEEcccccEE--EEECCCcE-EecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cCCC--
Confidence 47999 777765 45555543 4453 999999843 2 579999999988888876653 1 1100
Q ss_pred HHhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 413 VQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 413 ~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
..+.--++.+.+|++++..++..++... ....+|+|||++
T Consensus 69 -----------------------------G~I~d~d~~~~~l~~~~~~~~~~l~~~~-----------~~~~vvitvP~~ 108 (335)
T PRK13929 69 -----------------------------GVIADYDMTTDLLKQIMKKAGKNIGMTF-----------RKPNVVVCTPSG 108 (335)
T ss_pred -----------------------------CccCCHHHHHHHHHHHHHHHHHhcCCCC-----------CCCeEEEEcCCC
Confidence 0111227889999999998877665432 113799999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
|+..+|+++.+|++.||++.+.+++||.|||++|..... .+..++|+|+||||||+++++.++-
T Consensus 109 ~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-------~~~~~lvvDiG~gtt~v~vi~~~~~--------- 172 (335)
T PRK13929 109 STAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVD-------EPVANVVVDIGGGTTEVAIISFGGV--------- 172 (335)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcC-------CCceEEEEEeCCCeEEEEEEEeCCE---------
Confidence 999999999999999999999999999999999865422 4567899999999999999864320
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
...+...+||.+||..|.+++
T Consensus 173 -----------------------------------------------------------~~~~~~~~GG~~id~~l~~~l 193 (335)
T PRK13929 173 -----------------------------------------------------------VSCHSIRIGGDQLDEDIVSFV 193 (335)
T ss_pred -----------------------------------------------------------EEecCcCCHHHHHHHHHHHHH
Confidence 011235799999999999999
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCC----eeEEEEec--ccCCeeeEEEEehHHHHHHHHHHHHHHHH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST----QASIEIDS--LFEGVDFYTSITRARFEELNADLFRGTME 726 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~~--~~~~~~~~~~itr~e~e~~~~~~i~~i~~ 726 (840)
.+.+. ... . ...||++|+.++... ...+.+.. ...+.+..+.+++++|++++.+.+.++.+
T Consensus 194 ~~~~~----~~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~ 260 (335)
T PRK13929 194 RKKYN----LLI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILE 260 (335)
T ss_pred HHHhC----cCc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHH
Confidence 76442 111 1 247999999998632 22233321 22345568999999999999999999999
Q ss_pred HHHHHHHHcCCC--ccCcc-EEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHH
Q psy7262 727 PVEKSLRDAKMD--KAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 727 ~i~~~l~~a~~~--~~~Id-~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a 788 (840)
.|.+.|+++... ...++ .|+|+||+|++|.+.+.+++.| +.++....||+++||.||+..-
T Consensus 261 ~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 261 AIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 999999998643 35677 6999999999999999999999 6778888899999999999764
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-31 Score=289.51 Aligned_cols=306 Identities=23% Similarity=0.352 Sum_probs=220.7
Q ss_pred Ccccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCC---cEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChH
Q psy7262 337 SHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDT---ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412 (840)
Q Consensus 337 ~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~---~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~ 412 (840)
.+||| ||+++.+.. .|+..++ .+||+|+|.++ ..++|.+|.....+.|.++....
T Consensus 7 ~igIDlGt~~~~i~~--~~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~~------------ 65 (334)
T PRK13927 7 DLGIDLGTANTLVYV--KGKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAIR------------ 65 (334)
T ss_pred eeEEEcCcceEEEEE--CCCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEEe------------
Confidence 36999 777777633 2332233 27999999844 24899999988766666543221
Q ss_pred HHhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 413 VQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 413 ~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
|+. + ..+.--+....+|+++.......... . ..+|+|+|++
T Consensus 66 --------pi~----~-------------G~i~d~~~~~~ll~~~~~~~~~~~~~-~-------------~~~vi~vP~~ 106 (334)
T PRK13927 66 --------PMK----D-------------GVIADFDVTEKMLKYFIKKVHKNFRP-S-------------PRVVICVPSG 106 (334)
T ss_pred --------cCC----C-------------CeecCHHHHHHHHHHHHHHHhhccCC-C-------------CcEEEEeCCC
Confidence 110 0 00000134455666655444322111 0 3799999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
|++.+|+++++|++.||++.+.+++||.|||++|+.... .+..++|+|+||||||+++++.++.
T Consensus 107 ~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~-------~~~~~lvvDiGggttdvs~v~~~~~--------- 170 (334)
T PRK13927 107 ITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVT-------EPTGSMVVDIGGGTTEVAVISLGGI--------- 170 (334)
T ss_pred CCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCccc-------CCCeEEEEEeCCCeEEEEEEecCCe---------
Confidence 999999999999999999999999999999999965432 4567899999999999999865321
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
...+...+||.+||+.|.+++
T Consensus 171 -----------------------------------------------------------~~~~~~~lGG~~id~~l~~~l 191 (334)
T PRK13927 171 -----------------------------------------------------------VYSKSVRVGGDKFDEAIINYV 191 (334)
T ss_pred -----------------------------------------------------------EeeCCcCChHHHHHHHHHHHH
Confidence 011225699999999999999
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCe----eEEEEe--cccCCeeeEEEEehHHHHHHHHHHHHHHHH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ----ASIEID--SLFEGVDFYTSITRARFEELNADLFRGTME 726 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~--~~~~~~~~~~~itr~e~e~~~~~~i~~i~~ 726 (840)
.+.+. ... . ...+|++|+.++.... ..+.+. ....+.+..+.|+|++|++++.+.++++.+
T Consensus 192 ~~~~~----~~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 258 (334)
T PRK13927 192 RRNYN----LLI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVE 258 (334)
T ss_pred HHHhC----cCc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHH
Confidence 76542 111 1 2368899999875322 223332 223445567899999999999999999999
Q ss_pred HHHHHHHHcCCC--ccCcc-EEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHH
Q psy7262 727 PVEKSLRDAKMD--KAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 791 (840)
Q Consensus 727 ~i~~~l~~a~~~--~~~Id-~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l 791 (840)
.|.++|+++... ...++ .|+|+||+|++|.+++.|++.| +.++....+|+++||+||++++..+
T Consensus 259 ~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 259 AVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred HHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhhH
Confidence 999999988643 23344 5999999999999999999999 6778888899999999999998653
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=282.28 Aligned_cols=305 Identities=24% Similarity=0.333 Sum_probs=218.5
Q ss_pred cccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCC-----c--EEEcHHHHHHHHhCcCchhhhhhHhcCCCCC
Q psy7262 338 HPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDT-----E--RLIGDAAKNQVAMNPNNTIFDAKRLIGRKFE 409 (840)
Q Consensus 338 ~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~-----~--~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~ 409 (840)
+||| |||+|.+++...|. ++ ..||+|+|.++ + .++|.+|.....+.|.++.. ++-+...
T Consensus 5 ~giDlGt~~s~i~~~~~~~--~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~pi~~G-- 71 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRGI--VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--IRPMKDG-- 71 (333)
T ss_pred eEEecCcceEEEEECCCCE--EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--EecCCCC--
Confidence 7999 88888876643332 33 37999999843 3 67999998876665655431 2211100
Q ss_pred ChHHHhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEee
Q psy7262 410 DATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITV 489 (840)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitV 489 (840)
.... -+....+++|+........+.. . ..+|+||
T Consensus 72 --------------------------------~i~d-~~~~~~~~~~~l~~~~~~~~~~------------~-~~~vitv 105 (333)
T TIGR00904 72 --------------------------------VIAD-FEVTEKMIKYFIKQVHSRKSFF------------K-PRIVICV 105 (333)
T ss_pred --------------------------------EEEc-HHHHHHHHHHHHHHHhcccccC------------C-CcEEEEe
Confidence 0001 1344455555554433211111 0 3799999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCC
Q psy7262 490 PAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSG 569 (840)
Q Consensus 490 Pa~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g 569 (840)
|++|+..+|+++++|++.||++.+.+++||.|||++|+.... .+..++|+|+||||||+++++.++.+
T Consensus 106 P~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-------~~~~~lVvDiG~gttdvs~v~~~~~~----- 173 (333)
T TIGR00904 106 PSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE-------EPTGSMVVDIGGGTTEVAVISLGGIV----- 173 (333)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc-------CCceEEEEEcCCCeEEEEEEEeCCEE-----
Confidence 999999999999999999999999999999999999865322 45678999999999999998754210
Q ss_pred CceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHH
Q psy7262 570 ERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 649 (840)
Q Consensus 570 ~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~ 649 (840)
..+...+||.+||+.|.
T Consensus 174 ---------------------------------------------------------------~~~~~~lGG~did~~l~ 190 (333)
T TIGR00904 174 ---------------------------------------------------------------VSRSIRVGGDEFDEAII 190 (333)
T ss_pred ---------------------------------------------------------------ecCCccchHHHHHHHHH
Confidence 11235699999999999
Q ss_pred HHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCe-----eEEEEec--ccCCeeeEEEEehHHHHHHHHHHHH
Q psy7262 650 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ-----ASIEIDS--LFEGVDFYTSITRARFEELNADLFR 722 (840)
Q Consensus 650 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~i~i~~--~~~~~~~~~~itr~e~e~~~~~~i~ 722 (840)
+++.+.+. ... . ...||++|+.++.... ..+.+.. ...+......|+++++.+++.+.++
T Consensus 191 ~~l~~~~~----~~~--~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 257 (333)
T TIGR00904 191 NYIRRTYN----LLI--G-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVN 257 (333)
T ss_pred HHHHHHhc----ccC--C-------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHH
Confidence 99876542 111 1 2478999999875322 1222221 1122344578999999999999999
Q ss_pred HHHHHHHHHHHHcCCCc-cCc-c-EEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHH
Q psy7262 723 GTMEPVEKSLRDAKMDK-AQI-H-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 723 ~i~~~i~~~l~~a~~~~-~~I-d-~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~ 790 (840)
++.+.+.+.++.+.... .++ + .|+|+||+|++|.++++|++.| +.++....||+++||.||++++..
T Consensus 258 ~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 258 QIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 99999999999876432 233 3 6999999999999999999999 778888889999999999998754
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=280.50 Aligned_cols=306 Identities=23% Similarity=0.325 Sum_probs=222.3
Q ss_pred Ccccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeC---CcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChH
Q psy7262 337 SHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTD---TERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412 (840)
Q Consensus 337 ~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~---~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~ 412 (840)
.+||| ||+++.++.+..+ + ++ .+||+|+|.+ +..++|.+|.......|.+... ++
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~---------- 68 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--IR---------- 68 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-E-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--ee----------
Confidence 36999 8888877776332 2 22 2599999984 2468999998876555544221 11
Q ss_pred HHhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 413 VQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 413 ~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
|+. + ..+..-+....+|+++++.+....... ...+|+|+|++
T Consensus 69 --------pi~----~-------------G~i~d~~~~e~ll~~~~~~~~~~~~~~-------------~~~vvit~P~~ 110 (335)
T PRK13930 69 --------PLK----D-------------GVIADFEATEAMLRYFIKKARGRRFFR-------------KPRIVICVPSG 110 (335)
T ss_pred --------cCC----C-------------CeEcCHHHHHHHHHHHHHHHhhcccCC-------------CCcEEEEECCC
Confidence 111 0 111112557777777776554322211 26899999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
|+..+|+++.+|++.+|++.+.+++||.|||++|+.... .+..++|+|+||||||++++..+..
T Consensus 111 ~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~-------~~~~~lVvDiG~gttdvs~v~~g~~--------- 174 (335)
T PRK13930 111 ITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT-------EPVGNMVVDIGGGTTEVAVISLGGI--------- 174 (335)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC-------CCCceEEEEeCCCeEEEEEEEeCCE---------
Confidence 999999999999999999999999999999998865432 3446799999999999998864310
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
. ......+||.++|+.|.+++
T Consensus 175 ----------------------------------------------------------~-~~~~~~lGG~~id~~l~~~l 195 (335)
T PRK13930 175 ----------------------------------------------------------V-YSESIRVAGDEMDEAIVQYV 195 (335)
T ss_pred ----------------------------------------------------------E-eecCcCchhHHHHHHHHHHH
Confidence 0 12336799999999999999
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCe----eEEEEe--cccCCeeeEEEEehHHHHHHHHHHHHHHHH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ----ASIEID--SLFEGVDFYTSITRARFEELNADLFRGTME 726 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~--~~~~~~~~~~~itr~e~e~~~~~~i~~i~~ 726 (840)
.+++. ... . ...||++|+.++.... ..+.+. ....+.+..+.|++++|++++.+.++++.+
T Consensus 196 ~~~~~----~~~--~-------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 262 (335)
T PRK13930 196 RRKYN----LLI--G-------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVE 262 (335)
T ss_pred HHHhC----CCC--C-------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHH
Confidence 76542 111 1 1468999999875432 223332 122344557889999999999999999999
Q ss_pred HHHHHHHHcCCC--ccCccE-EEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHH
Q psy7262 727 PVEKSLRDAKMD--KAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 727 ~i~~~l~~a~~~--~~~Id~-V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~ 790 (840)
.|.++++.+... .+.++. |+|+||+|++|.++++|++.| +.++....+|+.+||.||++++..
T Consensus 263 ~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 263 AVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhC
Confidence 999999987532 233454 999999999999999999999 667778889999999999999854
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-29 Score=279.23 Aligned_cols=202 Identities=84% Similarity=1.240 Sum_probs=196.7
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|+++|+|||.+|++++++|+|+.|+|..+.|.+||||+..+++|..+|.|.+.||||+|+|+|+|+|+|.+|.||||.|+
T Consensus 414 ~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD~ngiL~Vt 493 (620)
T KOG0101|consen 414 FTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVT 493 (620)
T ss_pred ceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecCCCcEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
++++.+++...++|.+..++|+.++|++|..+++.+..+|...+.+.+++|.||+|+|.++..++++. +.++++++.+
T Consensus 494 a~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~--~~i~~~~~~~ 571 (620)
T KOG0101|consen 494 AVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK--GKINEEDKQK 571 (620)
T ss_pred eccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc--cccChhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998754 8999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQG 204 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~ 204 (840)
+..++.+...||+.+..+.+++|++|.++|+..+.||+.+++++
T Consensus 572 ~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 572 ILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 99999999999999888889999999999999999999999986
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-28 Score=285.07 Aligned_cols=204 Identities=72% Similarity=1.128 Sum_probs=193.8
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|+.++|+.+.|++|||++....+|..||+|.|.+++++++|.++|+|+|++|.||+|+|+
T Consensus 412 ~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~ 491 (653)
T PTZ00009 412 MTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNVS 491 (653)
T ss_pred eEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEECCCCeEEEE
Confidence 46899999999999999999999999999999999999988999999999999999999998899999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.+..+++...+++.....+|+.++++++++++.++..+|+..+++.+++|+||+|||++|++|+++++.++++++++++
T Consensus 492 ~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~ 571 (653)
T PTZ00009 492 AEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKAT 571 (653)
T ss_pred EecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHH
Confidence 99999999888888766677999999999999999999999999999999999999999999998656899999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQG 204 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~ 204 (840)
+.+.++++++||+++++++.++|++|+++|+++++|+..|++..
T Consensus 572 l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~ 615 (653)
T PTZ00009 572 IEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQA 615 (653)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988888999999999999999999999998853
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=261.64 Aligned_cols=305 Identities=25% Similarity=0.347 Sum_probs=210.0
Q ss_pred CccccccceEEEEEEECCeEEEEEcCCCCcccceEEEeeC---CcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 337 SHPVSFITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTD---TERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 337 ~~gIDGtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~---~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
.+|||.||+++..+..+.. ++.++ ||+|+|+. +-..+|++|...+.+.|.+....
T Consensus 3 ~igIDLGT~~t~i~~~~~G--iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~-------------- 60 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG--IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVV-------------- 60 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE--EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE--------------
T ss_pred ceEEecCcccEEEEECCCC--EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEE--------------
Confidence 4699955555443433322 23333 99999994 34568999988766655543221
Q ss_pred HhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCC
Q psy7262 414 QADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYF 493 (840)
Q Consensus 414 ~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~ 493 (840)
.|.. ..-+.=.++...+|+++.+.+...... .-..++++||+.-
T Consensus 61 ------~Pl~-----------------~GvI~D~~~~~~~l~~~l~k~~~~~~~-------------~~p~vvi~vP~~~ 104 (326)
T PF06723_consen 61 ------RPLK-----------------DGVIADYEAAEEMLRYFLKKALGRRSF-------------FRPRVVICVPSGI 104 (326)
T ss_dssp -------SEE-----------------TTEESSHHHHHHHHHHHHHHHHTSS-S-------------S--EEEEEE-SS-
T ss_pred ------cccc-----------------CCcccCHHHHHHHHHHHHHHhccCCCC-------------CCCeEEEEeCCCC
Confidence 1211 011112367888888888776542111 1168999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCcee
Q psy7262 494 NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNV 573 (840)
Q Consensus 494 ~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~ 573 (840)
++.+|+++.+|+..||.+.+.+++||.|||+..+..-. .+...|||||||||||++++.+++-
T Consensus 105 T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~-------~~~g~miVDIG~GtTdiavislggi---------- 167 (326)
T PF06723_consen 105 TEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIF-------EPRGSMIVDIGGGTTDIAVISLGGI---------- 167 (326)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TT-------SSS-EEEEEE-SS-EEEEEEETTEE----------
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCC-------CCCceEEEEECCCeEEEEEEECCCE----------
Confidence 99999999999999999999999999999999866543 5677899999999999999865421
Q ss_pred EEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHH
Q psy7262 574 LIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653 (840)
Q Consensus 574 ~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~ 653 (840)
+ . .....+||+++|+++.+++.
T Consensus 168 ---------------------------------v------------------------~-s~si~~gG~~~DeaI~~~ir 189 (326)
T PF06723_consen 168 ---------------------------------V------------------------A-SRSIRIGGDDIDEAIIRYIR 189 (326)
T ss_dssp ---------------------------------E------------------------E-EEEES-SHHHHHHHHHHHHH
T ss_pred ---------------------------------E------------------------E-EEEEEecCcchhHHHHHHHH
Confidence 0 0 11157899999999999998
Q ss_pred HHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCC----eeEEEEe--cccCCeeeEEEEehHHHHHHHHHHHHHHHHH
Q psy7262 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST----QASIEID--SLFEGVDFYTSITRARFEELNADLFRGTMEP 727 (840)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~--~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~ 727 (840)
+++.-.. =...||+.|+.+.... ...+.+. .+..|....+.|+.+++.+++.+.+.+|.+.
T Consensus 190 ~~y~l~I-------------g~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~ 256 (326)
T PF06723_consen 190 EKYNLLI-------------GERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEA 256 (326)
T ss_dssp HHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred HhhCccc-------------CHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 8774111 1246889999887532 2234443 4567788899999999999999999999999
Q ss_pred HHHHHHHcCCCc-cCc--cEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHH
Q psy7262 728 VEKSLRDAKMDK-AQI--HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 728 i~~~l~~a~~~~-~~I--d~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a 788 (840)
|+++|++.--.. .+| +.|+|+||+|+++.+.+.|++.+ +.++....||..+||+||....
T Consensus 257 i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 257 IKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp HHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHH
Confidence 999999753111 132 56999999999999999999999 8899999999999999999655
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=274.14 Aligned_cols=203 Identities=45% Similarity=0.674 Sum_probs=189.4
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..++|+.+.|+||||++..+.+|..||+|.|.|+|++++|.++|+|+|++|.||+|+|+
T Consensus 403 ~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~ 482 (653)
T PRK13411 403 FTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVS 482 (653)
T ss_pred eEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.+..+++...+.+... ..|+++|+++++++++++..+|++++++.+++|+||+|+|.+|++|++ +...++++++++
T Consensus 483 a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~--~~~~~~~~er~~ 559 (653)
T PRK13411 483 AQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE--NGELISEELKQR 559 (653)
T ss_pred EeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHH
Confidence 99999998888888654 459999999999999999999999999999999999999999999973 578999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGG 207 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~~~~ 207 (840)
+.+.++++++||+++ +++.++|++++++|++.+.++..++|++.++
T Consensus 560 i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 560 AEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999763 4578999999999999999999999876444
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=272.34 Aligned_cols=213 Identities=46% Similarity=0.738 Sum_probs=197.0
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..|+|+.+.|++|||++..+.+|..||+|.|.|+|++++|.++|+|+|++|.||+|+|+
T Consensus 442 ~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~ 521 (663)
T PTZ00400 442 FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNIS 521 (663)
T ss_pred eEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.+..+++...+++... .+|+.+++++++++++++..+|++.+++.+++|+||+|+|.+|++|. ++...++++++++
T Consensus 522 a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--e~~~~~s~~ere~ 598 (663)
T PTZ00400 522 AVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS--DLKDKISDADKDE 598 (663)
T ss_pred EEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhCCHHHHHH
Confidence 99999999888888754 45999999999999999999999999999999999999999999996 3888999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcceee
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPVQPFTTTQVL 219 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~~~~~~~~~~~~~~~~ 219 (840)
+.+.++++++||+++ +.++|++++++|++++.++..++|+++.+.+.++.+++.++
T Consensus 599 i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~~~~~~~~~~~~~~~ 654 (663)
T PTZ00400 599 LKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTNSE 654 (663)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCcc
Confidence 999999999999754 36899999999999999999999887777777777766553
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=271.80 Aligned_cols=202 Identities=35% Similarity=0.586 Sum_probs=186.0
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++.+|+|..++|+.+.|+||||++....+|..||+|.|.|+|++++|.++|+|+|++|.||+|+|+
T Consensus 403 ~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~V~ 482 (668)
T PRK13410 403 MKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVS 482 (668)
T ss_pred eEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccc--hhhhccCCHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVED--EKLKDKISDAER 158 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~--~~~~~~~~~~e~ 158 (840)
+.++.++++..++|... .+|+++|+++++++++++..+|+..+++.++||++|+|+|++|++|.+ +.+..++++++|
T Consensus 483 a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~ 561 (668)
T PRK13410 483 ATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQR 561 (668)
T ss_pred EEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHH
Confidence 99999999888888654 569999999999999999999999999999999999999999999974 368899999999
Q ss_pred HHHHHHHHHHHHHHhh-CCcccHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7262 159 TQILDKCNDVIKWLDA-NQLAEKEEFEHKQKELEAICNPIITKLYQ 203 (840)
Q Consensus 159 ~~l~~~l~e~~~WLd~-~~~a~~~~~~~kl~eL~~~~~~i~~r~~~ 203 (840)
+++.+.++++++||++ +....++.|++++++|+.+..++..|..+
T Consensus 562 ~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 562 RAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999954 44566677888888888888888777666
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=269.26 Aligned_cols=206 Identities=39% Similarity=0.661 Sum_probs=188.7
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..|+|+.+.|+||||++....+|..||+|.|.+++++++|.++|+|+|++|.||+|+|+
T Consensus 440 ~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~ 519 (673)
T PLN03184 440 MTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 519 (673)
T ss_pred eEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.+..++++..+++... .+|+++++++++++++++..+|++.+++.++||+||+|||.+|++|. ++.++++++++++
T Consensus 520 a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~--e~~~~~~~eer~~ 596 (673)
T PLN03184 520 ATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK--ELGDKVPADVKEK 596 (673)
T ss_pred EEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH--HHhhhCCHHHHHH
Confidence 99999999888888754 46999999999999999999999999999999999999999999996 4888999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPVQP 212 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~~~~~~~~~ 212 (840)
+.+.++++++||+.+ +.+++++++++|.+.+.++..++|.+.++++.|+
T Consensus 597 l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 645 (673)
T PLN03184 597 VEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGP 645 (673)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999754 3578899999999999999988887655444443
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=226.91 Aligned_cols=311 Identities=23% Similarity=0.337 Sum_probs=230.3
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeC--C---cEEEcHHHHHHHHhCcCchhhhhhHhcCCCCC
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTD--T---ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFE 409 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~--~---~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~ 409 (840)
..+||| ||.|+-|.+-..| ++.++ ||+|+++. + ...+|.+|+.++.+.|++...- ++..
T Consensus 7 ~diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~ai------RPmk 71 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAI------RPMK 71 (342)
T ss_pred ccceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCceEE------eecC
Confidence 478999 6666655443233 55666 99999985 3 3568999999987777765432 1111
Q ss_pred ChHHHhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEee
Q psy7262 410 DATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITV 489 (840)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitV 489 (840)
| ..+--.++...+|+|+.+......+. . ....++++|
T Consensus 72 d-------------------------------GVIAd~~~te~ml~~fik~~~~~~~~-~-----------~~prI~i~v 108 (342)
T COG1077 72 D-------------------------------GVIADFEVTELMLKYFIKKVHKNGSS-F-----------PKPRIVICV 108 (342)
T ss_pred C-------------------------------cEeecHHHHHHHHHHHHHHhccCCCC-C-----------CCCcEEEEe
Confidence 1 11112278888888888776432211 0 115799999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCC
Q psy7262 490 PAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSG 569 (840)
Q Consensus 490 Pa~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g 569 (840)
|..-++-.|+++++|++.||.+.+.++.||.|||+...+.-. .+..-+||||||||||++++.+++-+
T Consensus 109 P~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~-------ep~G~mvvDIGgGTTevaVISlggiv----- 176 (342)
T COG1077 109 PSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIM-------EPTGSMVVDIGGGTTEVAVISLGGIV----- 176 (342)
T ss_pred cCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCccc-------CCCCCEEEEeCCCceeEEEEEecCEE-----
Confidence 999999999999999999999999999999999998855433 44456999999999999998775410
Q ss_pred CceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHH
Q psy7262 570 ERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 649 (840)
Q Consensus 570 ~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~ 649 (840)
......+||+.+|+.+.
T Consensus 177 ---------------------------------------------------------------~~~Sirv~GD~~De~Ii 193 (342)
T COG1077 177 ---------------------------------------------------------------SSSSVRVGGDKMDEAII 193 (342)
T ss_pred ---------------------------------------------------------------EEeeEEEecchhhHHHH
Confidence 11124679999999999
Q ss_pred HHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCC--------CeeEEEEecccCCeeeEEEEehHHHHHHHHHHH
Q psy7262 650 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS--------TQASIEIDSLFEGVDFYTSITRARFEELNADLF 721 (840)
Q Consensus 650 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~--------~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i 721 (840)
.++.+.++--.+. ..+|+.|+..... .+..+.-..+..+..-.+.++.+++.+++++.+
T Consensus 194 ~yvr~~~nl~IGe-------------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v 260 (342)
T COG1077 194 VYVRKKYNLLIGE-------------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPL 260 (342)
T ss_pred HHHHHHhCeeecH-------------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHH
Confidence 9998877532222 1366777665322 123344444556777889999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CCccCccE-EEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 722 RGTMEPVEKSLRDAK--MDKAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 722 ~~i~~~i~~~l~~a~--~~~~~Id~-V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
+.|.+.++..|++.. +.++-++. ++|+||+|.+..+.+.|++.. +.++....+|..+||.|+......+..
T Consensus 261 ~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~~ 334 (342)
T COG1077 261 NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALDL 334 (342)
T ss_pred HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhHh
Confidence 999999999999853 33344555 999999999999999999988 778888899999999999988876653
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=260.92 Aligned_cols=208 Identities=40% Similarity=0.604 Sum_probs=191.2
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++..|+|..|+|+.+.|+|||||+..+.+|..||+|.|.|+||.++|.++|+|+|++|.||+|+|+
T Consensus 428 ~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~ 507 (657)
T PTZ00186 428 FTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVT 507 (657)
T ss_pred EEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.++.+|+...++|.... .|+++|+++++++++++..+|+..+++.+++|++|.+++.++..+++ . ..++++++++
T Consensus 508 a~d~~tg~~~~~~i~~~~-~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 583 (657)
T PTZ00186 508 AKDKATGKTQNITITANG-GLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE--W-KYVSDAEKEN 583 (657)
T ss_pred EEEccCCcEEEEEeccCc-cCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--h-ccCCHHHHHH
Confidence 999999999999997654 59999999999999999999999999999999999999999999964 1 4689999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPVQPF 213 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~~~~~~~~~~ 213 (840)
+.+.++++++||+.+ +.+.+.+++++++|++.+.++..+++.+.+++++++.
T Consensus 584 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 635 (657)
T PTZ00186 584 VKTLVAELRKAMENP-NVAKDDLAAATDKLQKAVMECGRTEYQQAAAANSGSS 635 (657)
T ss_pred HHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Confidence 999999999999743 3467899999999999999999988876666665543
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=261.89 Aligned_cols=198 Identities=49% Similarity=0.752 Sum_probs=186.3
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..++|+.+.|++|||++....+|..||+|.|.++|++++|.++|+|+|++|.||+|+|+
T Consensus 401 ~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~ 480 (627)
T PRK00290 401 MTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVS 480 (627)
T ss_pred EEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.+..+++...+++... .+|+.++++++++++.++..+|++.+++.+++|+||+|+|.+|++|+ ++...++++++++
T Consensus 481 a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~--~~~~~~~~~e~~~ 557 (627)
T PRK00290 481 AKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK--ELGDKVPADEKEK 557 (627)
T ss_pred EEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHHHH
Confidence 99999999888888654 45999999999999999999999999999999999999999999996 4778999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQG 204 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~ 204 (840)
+.+.++++++||+++ +.++|++++++|+++++++..|++++
T Consensus 558 i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~ 598 (627)
T PRK00290 558 IEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQ 598 (627)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999755 57899999999999999999998864
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-25 Score=260.74 Aligned_cols=198 Identities=47% Similarity=0.719 Sum_probs=185.1
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..++|+.+.++||||++..+.+|..||+|.|.++|++++|.++|+|+|++|.||+|+|+
T Consensus 403 ~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v~ 482 (621)
T CHL00094 403 MTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVT 482 (621)
T ss_pred EEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.+..+++...+.+... .+|++++++++++++.++..+|++.+++.++||+||+|+|.+|++++ .+...+++++|++
T Consensus 483 ~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~--~~~~~~~~~~~~~ 559 (621)
T CHL00094 483 AKDKGTGKEQSITIQGA-STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK--ELKDKISEEKKEK 559 (621)
T ss_pred EeeccCCceeeeeeccc-hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH--HHhccCCHHHHHH
Confidence 99999998888888643 46999999999999999999999999999999999999999999997 3888999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQG 204 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~ 204 (840)
+.+.++++++||+++ ..+++++++++|++.++++..+++..
T Consensus 560 ~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~~ 600 (621)
T CHL00094 560 IENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYSS 600 (621)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999654 34799999999999999999988773
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=230.28 Aligned_cols=200 Identities=22% Similarity=0.335 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHh
Q psy7262 447 EEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAY 526 (840)
Q Consensus 447 ~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y 526 (840)
.+..+++|+++++.++..++... .++|+|||++|++.||+++.+|++.||++.+.++.||.|||+.|
T Consensus 39 ~~~~~~~l~~l~~~a~~~~g~~~-------------~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~ 105 (239)
T TIGR02529 39 FLGAVEIVRRLKDTLEQKLGIEL-------------THAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVL 105 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCc-------------CcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHh
Confidence 38999999999999988877655 79999999999999999999999999999999999999999988
Q ss_pred hcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceE
Q psy7262 527 GLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNV 606 (840)
Q Consensus 527 ~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v 606 (840)
... ..+|+||||||||+++++.+.
T Consensus 106 ~~~------------~~~vvDiGggtt~i~i~~~G~-------------------------------------------- 129 (239)
T TIGR02529 106 QIK------------NGAVVDVGGGTTGISILKKGK-------------------------------------------- 129 (239)
T ss_pred cCC------------CcEEEEeCCCcEEEEEEECCe--------------------------------------------
Confidence 421 259999999999999975321
Q ss_pred EEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcC
Q psy7262 607 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLS 686 (840)
Q Consensus 607 ~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 686 (840)
++ . ..+..+||++||+.|++.+. . -...||++|+.+.
T Consensus 130 i~-----------------------~-~~~~~~GG~~it~~Ia~~~~--------i-----------~~~~AE~~K~~~~ 166 (239)
T TIGR02529 130 VI-----------------------Y-SADEPTGGTHMSLVLAGAYG--------I-----------SFEEAEEYKRGHK 166 (239)
T ss_pred EE-----------------------E-EEeeecchHHHHHHHHHHhC--------C-----------CHHHHHHHHHhcC
Confidence 00 0 12357899999998876552 1 1257888988754
Q ss_pred CCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcC
Q psy7262 687 SSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 766 (840)
Q Consensus 687 ~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~ 766 (840)
. .+++.+++.+.++++.+.+++.|++. .++.|+|+||+|++|.+++.+++.|
T Consensus 167 ~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~l- 218 (239)
T TIGR02529 167 D----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQL- 218 (239)
T ss_pred C----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHh-
Confidence 1 45677899999999999999999864 3578999999999999999999999
Q ss_pred CCcccCCCChhhHHHHHHHH
Q psy7262 767 GKELNKSINPDEAVAYGAAV 786 (840)
Q Consensus 767 ~~~v~~~~~p~~aVA~GAal 786 (840)
+.++..+.||+++||.|||+
T Consensus 219 g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 219 GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred CCCcccCCCCCeehhheeec
Confidence 77888899999999999985
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=256.82 Aligned_cols=196 Identities=50% Similarity=0.757 Sum_probs=183.3
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..|+|+.+.+++|||++..+.+|..||+|.|.+++++++|.++|+|+|++|.||+|+|+
T Consensus 399 ~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~ 478 (595)
T TIGR02350 399 MTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVS 478 (595)
T ss_pred eEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.+..+++...+++... .+|+.++++++++++.++..+|+..+++.+++|+||+|||.+|++|++ +...++++++++
T Consensus 479 ~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~--~~~~~~~~e~~~ 555 (595)
T TIGR02350 479 AKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE--AGDKLPAEEKEK 555 (595)
T ss_pred EEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHH
Confidence 99999999888888765 459999999999999999999999999999999999999999999963 578999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLY 202 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~ 202 (840)
+.+.++++++||+++ +..+|++++++|++++.++..++|
T Consensus 556 l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 556 IEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999765 357899999999999999987765
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-24 Score=249.42 Aligned_cols=197 Identities=32% Similarity=0.497 Sum_probs=183.2
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||+++++.|+|..++|+.+.++|||||+..+.+|..||+|.|.|+|+.++|.++|+|+|++|.||+|+|+
T Consensus 405 ~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~ 484 (616)
T PRK05183 405 VEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVT 484 (616)
T ss_pred EEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.++.++++..+.+.... .|++++++++++++.+++.+|+..+++.+++|++|.|+|.+++.+.+ ....++++++++
T Consensus 485 a~~~~~~~~~~~~i~~~~-~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~ 561 (616)
T PRK05183 485 AMEKSTGVEASIQVKPSY-GLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA--DGDLLSAAERAA 561 (616)
T ss_pred EEEcCCCcEEEecccccc-cCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHH
Confidence 999999999888886554 49999999999999999999999999999999999999999999963 346789999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 203 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~ 203 (840)
+.+.++++++||+.+ +.++|++++++|++.+.++..+.++
T Consensus 562 ~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~ 601 (616)
T PRK05183 562 IDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMD 601 (616)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999754 4689999999999999999986665
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=247.20 Aligned_cols=197 Identities=34% Similarity=0.506 Sum_probs=182.1
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++..|+|..|+|+.+.|+|||||+..+.+|..||+|.|.|+|+.++|.++|+|+|++|.||+|+|+
T Consensus 389 ~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~ 468 (599)
T TIGR01991 389 VEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVS 468 (599)
T ss_pred EEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.++.++++..+.+.... .|++++++++++++.++..+|+..++..+++|++|+|+|.++..+.+ +...++++++++
T Consensus 469 a~~~~t~~~~~~~i~~~~-~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 545 (599)
T TIGR01991 469 AQEQSTGVEQSIQVKPSY-GLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA--DGDLLSEDERAA 545 (599)
T ss_pred EEECCCCcEEEEeccccc-CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHH
Confidence 999999998888887554 49999999999999999999999999999999999999999998863 456889999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 203 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~ 203 (840)
+.+.++++++||+++ +.++++++.++|++++.++..+.++
T Consensus 546 ~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 546 IDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999754 3578999999999999999876654
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=243.64 Aligned_cols=190 Identities=31% Similarity=0.478 Sum_probs=171.7
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||+++++.|+|..++|+.+.|+|||||+..+.+|..||+|.|.|+|+.++|.++|+|+|++|.||+|+|+
T Consensus 383 ~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~ 462 (595)
T PRK01433 383 VEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVS 462 (595)
T ss_pred EEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.++.+|++..+.|.... .|+++|+++++++++++..+|+..++..+++|++|+++|.+++.+++ +...++++++++
T Consensus 463 a~~~~t~~~~~~~i~~~~-~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 539 (595)
T PRK01433 463 AYEKISNTSHAIEVKPNH-GIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE--LTTLLSESEISI 539 (595)
T ss_pred EEEcCCCcEEEEEecCCC-CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHH
Confidence 999999999999887654 49999999999999999999999999999999999999999999963 566789999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHH
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNP 196 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~ 196 (840)
+.+.++++++||+.++ ...+++++++|+....+
T Consensus 540 i~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 540 INSLLDNIKEAVHARD---IILINNSIKEFKSKIKK 572 (595)
T ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHH
Confidence 9999999999997543 44555555555555555
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=224.65 Aligned_cols=202 Identities=42% Similarity=0.671 Sum_probs=188.0
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|+.||||||.||++++..|.|.-|+|+.|.|+++|||+....+|..||+|.+.|+||+|+|.|+|+|+|.+|.|||++|+
T Consensus 428 ft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~vs 507 (640)
T KOG0102|consen 428 FTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVS 507 (640)
T ss_pred heecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCceeeee
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
|.++.+++..++++....+ |+++|++.|+.+++++...|+.++++.+.+|..++++|.....+. ++.+.++.++..+
T Consensus 508 A~dk~t~K~qsi~i~~sgg-Ls~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~--~~~~~~~~~~~~~ 584 (640)
T KOG0102|consen 508 AKDKGTGKSQSITIASSGG-LSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLK--EFEEKIPAEECEK 584 (640)
T ss_pred hhhcccCCccceEEeecCC-CCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhh--hhhhhCcHHHHHH
Confidence 9999999999999988766 999999999999999999999999999999999999999988886 5778888889999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 205 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~~ 205 (840)
+...+.++.+.+..-+..+..++..+...|++...++..-++...
T Consensus 585 i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~ 629 (640)
T KOG0102|consen 585 LEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNM 629 (640)
T ss_pred HHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhh
Confidence 999999999988432333458899999999999999999888653
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-22 Score=209.98 Aligned_cols=201 Identities=24% Similarity=0.367 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhh
Q psy7262 448 EVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527 (840)
Q Consensus 448 ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~ 527 (840)
+.....|+++++.++..++... ..++++||++|+..+++++.+|++.||++...++.||.|++..|.
T Consensus 67 ~~a~~~i~~~~~~ae~~~g~~i-------------~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~ 133 (267)
T PRK15080 67 IGAVTIVRRLKATLEEKLGREL-------------THAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLG 133 (267)
T ss_pred HHHHHHHHHHHHHHHHHhCCCc-------------CeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhC
Confidence 7788899999999988877655 788999999999999999999999999999999999999998773
Q ss_pred cccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEE
Q psy7262 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVL 607 (840)
Q Consensus 528 ~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~ 607 (840)
.. .++|+||||||||+++++-+. +
T Consensus 134 ~~------------~~~vvDIGggtt~i~v~~~g~--------------------------------------------~ 157 (267)
T PRK15080 134 ID------------NGAVVDIGGGTTGISILKDGK--------------------------------------------V 157 (267)
T ss_pred CC------------CcEEEEeCCCcEEEEEEECCe--------------------------------------------E
Confidence 21 258999999999999875321 0
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCC
Q psy7262 608 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 687 (840)
Q Consensus 608 v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 687 (840)
.. ..+..+||.+||+.+++++. . -+..||++|+.++
T Consensus 158 -----------------------~~-~~~~~~GG~~it~~Ia~~l~--------i-----------~~~eAE~lK~~~~- 193 (267)
T PRK15080 158 -----------------------VY-SADEPTGGTHMSLVLAGAYG--------I-----------SFEEAEQYKRDPK- 193 (267)
T ss_pred -----------------------EE-EecccCchHHHHHHHHHHhC--------C-----------CHHHHHHHHhccC-
Confidence 01 12468999999999987762 1 1246888887653
Q ss_pred CCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCC
Q psy7262 688 STQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 767 (840)
Q Consensus 688 ~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~ 767 (840)
+++++.+++++.++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.| +
T Consensus 194 ---------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g 246 (267)
T PRK15080 194 ---------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-G 246 (267)
T ss_pred ---------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-C
Confidence 257788999999999999999998863 5789999999999999999999999 7
Q ss_pred CcccCCCChhhHHHHHHHHHH
Q psy7262 768 KELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 768 ~~v~~~~~p~~aVA~GAal~a 788 (840)
.++..+.+|+.++|.|||+++
T Consensus 247 ~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 247 LPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCcccCCCchHHHHHHHHhhC
Confidence 788889999999999999874
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-20 Score=219.44 Aligned_cols=197 Identities=40% Similarity=0.728 Sum_probs=180.7
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.++||+|+++|++++..|+|..++|..+.+.+|+|+.....+|..||+|.|.++++.++|.++|+|+|++|.||+|+|+
T Consensus 405 ~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~Gil~V~ 484 (602)
T PF00012_consen 405 FSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENGILSVE 484 (602)
T ss_dssp EEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTSEEEEE
T ss_pred cccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeeeeehhhh
Confidence 46799999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.+...+....+.+..... +++++++++.++++++..+|+..++..+++|+||+++|++|+.+++. .+.++++++
T Consensus 485 ~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~~~~~~~~~-- 559 (602)
T PF00012_consen 485 AAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--KDFVSEEEK-- 559 (602)
T ss_dssp EEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--GGGSTHHHH--
T ss_pred hcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--hccCCHHHH--
Confidence 9999888888888877655 99999999999999999999999999999999999999999999864 677787777
Q ss_pred HHHHHHHHHHHHh-hCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7262 161 ILDKCNDVIKWLD-ANQLAEKEEFEHKQKELEAICNPIITKLYQ 203 (840)
Q Consensus 161 l~~~l~e~~~WLd-~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~ 203 (840)
.+.+++..+||+ ..+.++.++|++|+++|++..+||..|+++
T Consensus 560 -~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 560 -KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp -HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788999999994 456778999999999999999999999874
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=202.94 Aligned_cols=195 Identities=49% Similarity=0.753 Sum_probs=184.1
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.++|++|+.+|+++...|+|..|+|..+.++++|||+....+|..+|.|.+.++||.++|.++|+|+|.+|.||+++|+
T Consensus 384 ~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~ 463 (579)
T COG0443 384 RTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVT 463 (579)
T ss_pred hhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.++.+++...++|....+ |++++++.|.+.++.+...|+..++..+.+|.++.+++.++..|.+.. .+++++++.
T Consensus 464 a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~ 539 (579)
T COG0443 464 AKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV---KVSEEEKEK 539 (579)
T ss_pred eecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc---cCCHHHHHH
Confidence 9999999999999999888 999999999999999999999999999999999999999999997532 899999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 203 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~ 203 (840)
+.+.+.++++||++ + .++++.+.++|+....++..+.++
T Consensus 540 ~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 540 IEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999976 2 889999999999999999887664
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-18 Score=190.30 Aligned_cols=195 Identities=23% Similarity=0.318 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeEE
Q psy7262 496 SQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLI 575 (840)
Q Consensus 496 ~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~ 575 (840)
...+.+.+|++.||++...++.||.|+|+.|.... ..+..++|+|+||||||+++++.+.
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-------~~~~~~~vvDiG~gtt~i~i~~~g~------------- 217 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-------EKELGVCLIDIGGGTTDIAVYTGGS------------- 217 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-------hhcCCEEEEEeCCCcEEEEEEECCE-------------
Confidence 56677889999999999999999999999884322 2456799999999999999985321
Q ss_pred EecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHHH
Q psy7262 576 FDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 655 (840)
Q Consensus 576 ~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~ 655 (840)
+++ .....+||+++++.+.+.+.
T Consensus 218 -------------------------------~~~------------------------~~~i~~GG~~it~~i~~~l~-- 240 (371)
T TIGR01174 218 -------------------------------IRY------------------------TKVIPIGGNHITKDIAKALR-- 240 (371)
T ss_pred -------------------------------EEE------------------------EeeecchHHHHHHHHHHHhC--
Confidence 000 11246899999998876542
Q ss_pred HHHhccCCccccHHHHHHHHHHHHHHHHHcCCC------CeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHH
Q psy7262 656 FKRKYKKDLTTNKRALRRLRTACERAKRTLSSS------TQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVE 729 (840)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~ 729 (840)
.....||++|+.++.. ....+.+.... .+....|++++|++++++.++++.+.+.
T Consensus 241 -----------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii~~~~~ei~~~i~ 301 (371)
T TIGR01174 241 -----------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEIIEARAEEILEIVK 301 (371)
T ss_pred -----------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHHHHHHHHHHHHHH
Confidence 2245789999998763 23455555443 3556899999999999999999999997
Q ss_pred -HHHHHcCCCccCccE-EEEEcCCCCcHHHHHHHHhHcCCC-cccC----------CCChhhHHHHHHHHH
Q psy7262 730 -KSLRDAKMDKAQIHD-IVLVGGSTRIPKVQKLLQDFFNGK-ELNK----------SINPDEAVAYGAAVQ 787 (840)
Q Consensus 730 -~~l~~a~~~~~~Id~-V~LvGG~s~~p~v~~~l~~~f~~~-~v~~----------~~~p~~aVA~GAal~ 787 (840)
+.|++++.. .+++. |+|+||+|++|.+++.+++.|+.. ++.. ..+|..++|.|+++|
T Consensus 302 ~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 302 QKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred HHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 999998876 56777 999999999999999999999432 1111 237899999999864
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-17 Score=186.43 Aligned_cols=197 Identities=20% Similarity=0.234 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeEEE
Q psy7262 497 QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIF 576 (840)
Q Consensus 497 ~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~~ 576 (840)
..+.+.+|++.||++...++.||.|+|..+.... .++..++|+||||||||++++.-+.
T Consensus 167 ~~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-------e~~~gv~vvDiGggtTdisv~~~G~-------------- 225 (420)
T PRK09472 167 MAKNIVKAVERCGLKVDQLIFAGLASSYAVLTED-------ERELGVCVVDIGGGTMDIAVYTGGA-------------- 225 (420)
T ss_pred HHHHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-------hhhcCeEEEEeCCCceEEEEEECCE--------------
Confidence 3445567999999999999999999999885432 2567899999999999999996321
Q ss_pred ecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHHHH
Q psy7262 577 DLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 656 (840)
Q Consensus 577 d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~ 656 (840)
++ ......+||+++++.|++.+.-
T Consensus 226 ------------------------------l~------------------------~~~~i~~GG~~it~dIa~~l~i-- 249 (420)
T PRK09472 226 ------------------------------LR------------------------HTKVIPYAGNVVTSDIAYAFGT-- 249 (420)
T ss_pred ------------------------------EE------------------------EEeeeechHHHHHHHHHHHhCc--
Confidence 11 1112568999999998765521
Q ss_pred HHhccCCccccHHHHHHHHHHHHHHHHHcCCC------CeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHH
Q psy7262 657 KRKYKKDLTTNKRALRRLRTACERAKRTLSSS------TQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEK 730 (840)
Q Consensus 657 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~ 730 (840)
-...||++|+.+... ....+.+....+. ....+++.+|.+++.+.++++.+.+.+
T Consensus 250 -----------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~ii~~r~~ei~~~i~~ 310 (420)
T PRK09472 250 -----------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEVIEPRYTELLNLVNE 310 (420)
T ss_pred -----------------CHHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 135788998765421 2344555543332 235889999999999987777777764
Q ss_pred -------HHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccC------------CCChhhHHHHHHHHHHHH
Q psy7262 731 -------SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK------------SINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 731 -------~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~------------~~~p~~aVA~GAal~a~~ 790 (840)
.+..++.....++.|+|+||+|++|.|++.+++.|+ .++.. ..+|..|+|.|+++|+..
T Consensus 311 ~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 311 EILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 456667777778999999999999999999999993 33321 248999999999999863
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=189.23 Aligned_cols=199 Identities=21% Similarity=0.358 Sum_probs=166.0
Q ss_pred cEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCC-CCeEEEEEEecCCccEEEE
Q psy7262 2 TALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRG-VPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 2 ~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G-~~~I~vtf~ld~nGil~V~ 80 (840)
..+||+|.++|.+|..+| ++...|.+.+.|......+ .....|++|.+.++.+...| ..+++|+..+|.+||+.|+
T Consensus 416 ~evF~~~~~~p~~K~lT~--~Rk~~F~lea~yt~~~~lp-~~~~kI~~~~i~~v~~~~~ge~skVKvkvr~n~~Gi~~i~ 492 (727)
T KOG0103|consen 416 TEVFPKGHPSPSVKLLTF--NRKGPFTLEAKYTKVNKLP-YPKPKIEKWTITGVTPSEDGEFSKVKVKVRLNEHGIDTIE 492 (727)
T ss_pred eeeecCCCCCCCceEEEE--EecCceEEEEEeccccccC-CCCCceeeEEecccccCccccccceeEEEEEcCccceeee
Confidence 479999999999999988 8999999999887766665 66788999999999988774 5579999999999999874
Q ss_pred EEe--------------e--------------ccc----cccceeEecc-CCCCCHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy7262 81 AIE--------------K--------------STG----KENKITITND-RGRLSKEDIERMVNDAEKYKAEDEKQKAVI 127 (840)
Q Consensus 81 a~~--------------~--------------~~~----~~~~l~i~~~-~~~ls~eei~~~~~~~~~~~~~D~~~~~~~ 127 (840)
..- . ..+ +...+.+... .+.|+..+++..++++.+|..+|+...++.
T Consensus 493 sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~ 572 (727)
T KOG0103|consen 493 SATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETV 572 (727)
T ss_pred cceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 211 0 001 1112223222 236999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHhhccchhhhccCCHHHHHHHHHHHHHHHHHH-hhCCcccHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7262 128 SAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL-DANQLAEKEEFEHKQKELEAICNPIITKLYQG 204 (840)
Q Consensus 128 eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~~~WL-d~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~ 204 (840)
++||.||+|||++|++|.+ .|..++++++++++...|+++++|| ++|++.++..|..|+.+|+++++....+.+..
T Consensus 573 D~KNaleeyVY~~R~kl~~-~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~~~r~~e~~~ 649 (727)
T KOG0103|consen 573 DAKNALEEYVYDMRDKLSD-KYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGDKKRFDENEE 649 (727)
T ss_pred cHHHHHHHHHHHHHHHhhh-hhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 9999999999999999986 8999999999999999999999999 88999999999999999999998433333333
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-14 Score=157.42 Aligned_cols=209 Identities=26% Similarity=0.386 Sum_probs=162.7
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeecc
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIED 562 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~ 562 (840)
.-.++++|..+ -+.|.+|++.+|++...++.+|.|+|.....+. .++.+++++||||||||+++++-+.
T Consensus 156 ~vhvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d-------EkelGv~lIDiG~GTTdIai~~~G~ 224 (418)
T COG0849 156 EVHVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTED-------EKELGVALIDIGGGTTDIAIYKNGA 224 (418)
T ss_pred EEEEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc-------cHhcCeEEEEeCCCcEEEEEEECCE
Confidence 34466666644 456899999999999999999999998775443 3788999999999999999996431
Q ss_pred CcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchh
Q psy7262 563 GIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642 (840)
Q Consensus 563 ~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~ 642 (840)
+. ..+..++||+
T Consensus 225 -------------------------------------------l~-------------------------~~~~ipvgG~ 236 (418)
T COG0849 225 -------------------------------------------LR-------------------------YTGVIPVGGD 236 (418)
T ss_pred -------------------------------------------EE-------------------------EEeeEeeCcc
Confidence 11 1122678999
Q ss_pred hhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCC------CeeEEEEecccCCeeeEEEEehHHHHHH
Q psy7262 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS------TQASIEIDSLFEGVDFYTSITRARFEEL 716 (840)
Q Consensus 643 ~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~itr~e~e~~ 716 (840)
+++..|+.-|...++ .||+.|+..... ....+.++.... +....+++.++.++
T Consensus 237 ~vT~DIa~~l~t~~~-------------------~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~--~~~~~~t~~~ls~I 295 (418)
T COG0849 237 HVTKDIAKGLKTPFE-------------------EAERIKIKYGSALISLADDEETIEVPSVGS--DIPRQVTRSELSEI 295 (418)
T ss_pred HHHHHHHHHhCCCHH-------------------HHHHHHHHcCccccCcCCCcceEecccCCC--cccchhhHHHHHHH
Confidence 999999988854443 678888776542 233456655443 33678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCC-cccC----------CCChhhHHHHHHH
Q psy7262 717 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-ELNK----------SINPDEAVAYGAA 785 (840)
Q Consensus 717 ~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~-~v~~----------~~~p~~aVA~GAa 785 (840)
+++.+.++..++++.|++.+....-...|+|+||++.+|.+.+..++.|+.. ++.. ..+|..+.|.|..
T Consensus 296 I~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~ 375 (418)
T COG0849 296 IEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLL 375 (418)
T ss_pred HHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHH
Confidence 9999999999999999999987667788999999999999999999999421 1111 2468999999999
Q ss_pred HHHHHH
Q psy7262 786 VQAAIL 791 (840)
Q Consensus 786 l~a~~l 791 (840)
++++.+
T Consensus 376 ~~~~~~ 381 (418)
T COG0849 376 LYGALM 381 (418)
T ss_pred HHHhhc
Confidence 999864
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=153.96 Aligned_cols=252 Identities=20% Similarity=0.325 Sum_probs=190.9
Q ss_pred EeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCC-------CCCeEEEEEEecCCc
Q psy7262 3 ALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR-------GVPQIEVTFDIDANG 75 (840)
Q Consensus 3 ~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~-------G~~~I~vtf~ld~nG 75 (840)
.+|++|.+||.++.++|+.+.| .+.+.++|..-+ ..+..+.|+|+..+.+ ....|+++|.+|.+|
T Consensus 452 ~lf~~~~~yPnk~vi~~~~ysd-df~~~~n~~~~~-------~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sg 523 (902)
T KOG0104|consen 452 DLFARMSPYPNKKVITFTSYSD-DFPFNINYGDLG-------QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSG 523 (902)
T ss_pred HHHhcCCcCCCcceeeccccCC-ccccccchhhhc-------cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcC
Confidence 4799999999998888765444 355555542211 2356899999875422 123499999999999
Q ss_pred cEEEEEEeecc--------------------------------------------cc-cc--------------------
Q psy7262 76 ILNVTAIEKST--------------------------------------------GK-EN-------------------- 90 (840)
Q Consensus 76 il~V~a~~~~~--------------------------------------------~~-~~-------------------- 90 (840)
++.|+..+..+ .+ +.
T Consensus 524 i~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~ 603 (902)
T KOG0104|consen 524 IVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETS 603 (902)
T ss_pred ceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhhhhccCccccccccccccccccccccccccch
Confidence 99875432100 00 00
Q ss_pred -----------------ceeEecc---CCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhh
Q psy7262 91 -----------------KITITND---RGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLK 150 (840)
Q Consensus 91 -----------------~l~i~~~---~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~ 150 (840)
.+.|... ...|.+..++....+++.+..+|+.+.++.++.|.||.|+|.+.++|++++|.
T Consensus 604 e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~ 683 (902)
T KOG0104|consen 604 EAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYA 683 (902)
T ss_pred hccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHh
Confidence 0222211 13488999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHH-hhCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcceeeeccccccccc
Q psy7262 151 DKISDAERTQILDKCNDVIKWL-DANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPVQPFTTTQVLCSKLFTFHQF 229 (840)
Q Consensus 151 ~~~~~~e~~~l~~~l~e~~~WL-d~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (840)
++.+++++..|.+.+..+.+|| |++....+..+.+++.+|++++..+..|..+. .-++.++.+|.++
T Consensus 684 e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~------------kq~pe~l~~l~~~ 751 (902)
T KOG0104|consen 684 EVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEER------------KQFPEELEALKNL 751 (902)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHH------------HhhhHHHHHHHHH
Confidence 9999999999999999999999 77888889999999999999999999998874 3388899999999
Q ss_pred cCCcccccccceeeccCCCccccccccccccccCCCCchhhHHHHHHHHHhcccccccc
Q psy7262 230 YPKSSCFLHNFNIVGHSSDANFESFWKGGERKKSDKNSTDLFLEVLANVIKRQKFLVTY 288 (840)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (840)
++++.+|+.+++.+ +.|-.+ |.-.|+-=++.|.++|....+....
T Consensus 752 l~~s~~~l~~~~~~---------~~~~E~-----d~~ft~~e~~~L~k~i~~t~~W~~~ 796 (902)
T KOG0104|consen 752 LNRSFSFLKQARNL---------STWEEK-----DTIFTKTEIDTLEKVIAKTTAWLND 796 (902)
T ss_pred HHHHHHHHhccccc---------cccchh-----ccchhhhhHHHHHHHHHHhHHHhhh
Confidence 99999999999988 334321 1133444456666666664444433
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-13 Score=150.21 Aligned_cols=217 Identities=19% Similarity=0.192 Sum_probs=142.9
Q ss_pred ceEEEeeCCCCCHHHHHHHHHH-HHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeec
Q psy7262 483 SNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~A-a~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
..+++++|..++..+|+.+.+. .+..|++.+.++.+|.+|+++++ ..+.+|||+|+|+|+++.+--+
T Consensus 96 ~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g------------~~~~lVVDiG~~~t~i~pv~~G 163 (371)
T cd00012 96 HPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASG------------RTTGLVVDSGDGVTHVVPVYDG 163 (371)
T ss_pred CceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcC------------CCeEEEEECCCCeeEEEEEECC
Confidence 6899999999998888887764 67799999999999999999873 3577999999999999877422
Q ss_pred cCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCch
Q psy7262 562 DGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 641 (840)
Q Consensus 562 ~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG 641 (840)
. + +........+||
T Consensus 164 ~--------------------------------------------~----------------------~~~~~~~~~~GG 177 (371)
T cd00012 164 Y--------------------------------------------V----------------------LPHAIKRLDLAG 177 (371)
T ss_pred E--------------------------------------------E----------------------chhhheeccccH
Confidence 1 0 000111257899
Q ss_pred hhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCe---------------eEEEEecccCCeeeEE
Q psy7262 642 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ---------------ASIEIDSLFEGVDFYT 706 (840)
Q Consensus 642 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------------~~i~i~~~~~~~~~~~ 706 (840)
.++|+.|.+.+..... ..... .-...++..|+.+..-.. ..... .+.++ ..+
T Consensus 178 ~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~-~lpd~--~~i 244 (371)
T cd00012 178 RDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTY-ELPDG--RTI 244 (371)
T ss_pred HHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeE-ECCCC--eEE
Confidence 9999999988754321 00000 112234555555432100 00111 11122 245
Q ss_pred EEehHHHH---HHHHH-----HHHHHHHHHHHHHHHcCCC--ccCccEEEEEcCCCCcHHHHHHHHhHcC----C-----
Q psy7262 707 SITRARFE---ELNAD-----LFRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFN----G----- 767 (840)
Q Consensus 707 ~itr~e~e---~~~~~-----~i~~i~~~i~~~l~~a~~~--~~~Id~V~LvGG~s~~p~v~~~l~~~f~----~----- 767 (840)
.+..+.|. .++.| ....+.+.|.+++...... ..-++.|+|+||+|++|.+.++|++.+. .
T Consensus 245 ~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~ 324 (371)
T cd00012 245 KVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTK 324 (371)
T ss_pred EEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceE
Confidence 56655442 34444 2347778888888775432 2346789999999999999999998873 2
Q ss_pred CcccCCCChhhHHHHHHHHHHHH
Q psy7262 768 KELNKSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 768 ~~v~~~~~p~~aVA~GAal~a~~ 790 (840)
..+....+|..++-.||.++|..
T Consensus 325 ~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 325 VKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred EEEccCCCccccEEeCchhhcCc
Confidence 12345568899999999999954
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-12 Score=143.34 Aligned_cols=236 Identities=19% Similarity=0.197 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHh
Q psy7262 448 EVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAY 526 (840)
Q Consensus 448 ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y 526 (840)
+.+..+++++... .++... .-..++++.|...+..+|+.+.+.+ +..|++.+.++.+|.+|++++
T Consensus 75 ~~~e~i~~~~~~~---~l~~~~-----------~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~ 140 (373)
T smart00268 75 DDMEKIWDYTFFN---ELRVEP-----------EEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYAS 140 (373)
T ss_pred HHHHHHHHHHHhh---hcCCCC-----------ccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhC
Confidence 6677777777654 222211 1157999999999999999998887 577999999999999999887
Q ss_pred hcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceE
Q psy7262 527 GLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNV 606 (840)
Q Consensus 527 ~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v 606 (840)
+ ..+.||||+|+|+|+++.+--+.
T Consensus 141 g------------~~~~lVVDiG~~~t~v~pv~~G~-------------------------------------------- 164 (373)
T smart00268 141 G------------RTTGLVIDSGDGVTHVVPVVDGY-------------------------------------------- 164 (373)
T ss_pred C------------CCEEEEEecCCCcceEEEEECCE--------------------------------------------
Confidence 3 45789999999999998874211
Q ss_pred EEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcC
Q psy7262 607 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLS 686 (840)
Q Consensus 607 ~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 686 (840)
.+ ........+||.++|+.|.+++...- ...... .-...++..|+.+.
T Consensus 165 ~~----------------------~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~ 212 (373)
T smart00268 165 VL----------------------PHAIKRIDIAGRDLTDYLKELLSERG---YQFNSS-------AEFEIVREIKEKLC 212 (373)
T ss_pred Ec----------------------hhhheeccCcHHHHHHHHHHHHHhcC---CCCCcH-------HHHHHHHHhhhhee
Confidence 00 00011157899999999988775410 000000 01123344444432
Q ss_pred CC-------------------CeeEEEEecccCCeeeEEEEehHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCC-
Q psy7262 687 SS-------------------TQASIEIDSLFEGVDFYTSITRARF---EELNADL-----FRGTMEPVEKSLRDAKMD- 738 (840)
Q Consensus 687 ~~-------------------~~~~i~i~~~~~~~~~~~~itr~e~---e~~~~~~-----i~~i~~~i~~~l~~a~~~- 738 (840)
.- ....+. +.++.. +.+..+.+ |.++.|. ...+.+.|.+++..+...
T Consensus 213 ~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg~~--~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~ 287 (373)
T smart00268 213 YVAEDFEKEMKKARESSESSKLEKTYE---LPDGNT--IKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDV 287 (373)
T ss_pred eecCChHHHHHHhhhcccccccceeEE---CCCCCE--EEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhH
Confidence 10 011111 122222 33443333 2334432 246778888888765422
Q ss_pred -ccCccEEEEEcCCCCcHHHHHHHHhHc----CC---CcccCCCChhhHHHHHHHHHHHH
Q psy7262 739 -KAQIHDIVLVGGSTRIPKVQKLLQDFF----NG---KELNKSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 739 -~~~Id~V~LvGG~s~~p~v~~~l~~~f----~~---~~v~~~~~p~~aVA~GAal~a~~ 790 (840)
..-.+.|+|+||+|++|.+.++|.+.+ |. ..+..+.++..++=.||+++|..
T Consensus 288 r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 288 RKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 223467999999999999999998877 21 13444556778888898888753
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-10 Score=127.90 Aligned_cols=213 Identities=14% Similarity=0.203 Sum_probs=134.2
Q ss_pred ceEEEeeCCCCCHHHH-HHHHHHHHHc------------CCcEEEeecchHHHHHHhhcccccCC-CCCCCCceEEEEec
Q psy7262 483 SNAVITVPAYFNDSQR-QATKDSGTIA------------GLNVLRIINEPTAAAIAYGLDKKVGS-TAGSGERNVLIFDL 548 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r-~~l~~Aa~~A------------G~~~v~~v~Ep~AAAl~y~~~~~~~~-~~~~~~~~vLVvDi 548 (840)
..++.+.|+.+...++ +.+++..... -+..+.+++||.+|.+++..+..... ........++||||
T Consensus 113 v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDI 192 (344)
T PRK13917 113 VVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDF 192 (344)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEc
Confidence 3556699999865443 6677655321 12457889999999887766532100 01123456899999
Q ss_pred CCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeE
Q psy7262 549 GGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIF 628 (840)
Q Consensus 549 GGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~ 628 (840)
|+||||+++++-.. +
T Consensus 193 G~~TtD~~v~~~~~-----------------------------------------------------------------~ 207 (344)
T PRK13917 193 GSGTTDLDTIQNLK-----------------------------------------------------------------R 207 (344)
T ss_pred CCCcEEEEEEeCcE-----------------------------------------------------------------E
Confidence 99999999874210 0
Q ss_pred EEEEeeCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEE
Q psy7262 629 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSI 708 (840)
Q Consensus 629 ~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~i 708 (840)
+....+....|...+.+.+.+++... ..+..+ +.. ++ +++ |... .+.+. .+. .+.+
T Consensus 208 -~~~~s~s~~~G~~~~~~~I~~~i~~~---~~~~~~--~~~---~i----e~~---l~~g---~i~~~---~~~--~id~ 263 (344)
T PRK13917 208 -VEEESFVIPKGTIDVYKRIASHISKK---EEGASI--TPY---ML----EKG---LEYG---ACKLN---QKT--VIDF 263 (344)
T ss_pred -cccccccccchHHHHHHHHHHHHHhh---CCCCCC--CHH---HH----HHH---HHcC---cEEeC---CCc--eEeh
Confidence 01112225678888888887777432 212211 111 11 111 2111 11111 111 1223
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHH
Q psy7262 709 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 709 tr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a 788 (840)
++++.++++++++++.+.|...+.. ..+++.|+|+||++++ +++.|++.||.. ....||..|.|+|...+|
T Consensus 264 -~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~--~~~~~p~~ANa~G~~~~g 334 (344)
T PRK13917 264 -KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV--EKADESQFANVRGYYKYG 334 (344)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe--EEcCChHHHHHHHHHHHH
Confidence 4567778888888888888877753 3478999999999986 899999999754 456799999999999999
Q ss_pred HHHcC
Q psy7262 789 AILHG 793 (840)
Q Consensus 789 ~~l~~ 793 (840)
..+.+
T Consensus 335 ~~~~~ 339 (344)
T PRK13917 335 ELLKN 339 (344)
T ss_pred HHHhc
Confidence 76654
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-12 Score=126.04 Aligned_cols=195 Identities=25% Similarity=0.369 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccc
Q psy7262 452 MVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKK 531 (840)
Q Consensus 452 ~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~ 531 (840)
.+.+.+++.+++.+|... .+..=++|..-.....+...+..+.||++.+..++||+|||.-..++
T Consensus 76 eiVrrlkd~lEk~lGi~~-------------tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~-- 140 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRF-------------THAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD-- 140 (277)
T ss_pred HHHHHHHHHHHHhhCeEe-------------eeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC--
Confidence 456788899999999877 67777788888777778888889999999999999999998755433
Q ss_pred cCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEc
Q psy7262 532 VGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDL 611 (840)
Q Consensus 532 ~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~ 611 (840)
+-.|||+|||||-||+++-+.-+.
T Consensus 141 ----------dg~VVDiGGGTTGIsi~kkGkViy---------------------------------------------- 164 (277)
T COG4820 141 ----------DGGVVDIGGGTTGISIVKKGKVIY---------------------------------------------- 164 (277)
T ss_pred ----------CCcEEEeCCCcceeEEEEcCcEEE----------------------------------------------
Confidence 236899999999999998653111
Q ss_pred CCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCee
Q psy7262 612 GGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQA 691 (840)
Q Consensus 612 Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~ 691 (840)
..+...||.++...|+-.. +. -...+|..|..-..
T Consensus 165 ----------------------~ADEpTGGtHmtLvlAG~y--------gi-----------~~EeAE~~Kr~~k~---- 199 (277)
T COG4820 165 ----------------------SADEPTGGTHMTLVLAGNY--------GI-----------SLEEAEQYKRGHKK---- 199 (277)
T ss_pred ----------------------eccCCCCceeEEEEEeccc--------Cc-----------CHhHHHHhhhcccc----
Confidence 1112333333333222111 11 01234444433211
Q ss_pred EEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCccc
Q psy7262 692 SIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN 771 (840)
Q Consensus 692 ~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~ 771 (840)
.+|.-..+.|+++++.+.+...++..+ +..++|+||+|.-|.+.+.+++.| ..++.
T Consensus 200 ------------------~~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~ 255 (277)
T COG4820 200 ------------------GEEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVH 255 (277)
T ss_pred ------------------chhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccccc
Confidence 112223457888888888888887755 557999999999999999999999 88999
Q ss_pred CCCChhhHHHHHHHH
Q psy7262 772 KSINPDEAVAYGAAV 786 (840)
Q Consensus 772 ~~~~p~~aVA~GAal 786 (840)
.|..|....-.|.|+
T Consensus 256 ~P~~p~y~TPLgIA~ 270 (277)
T COG4820 256 LPQHPLYMTPLGIAS 270 (277)
T ss_pred cCCCcceechhhhhh
Confidence 999998888787774
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.9e-10 Score=120.52 Aligned_cols=207 Identities=18% Similarity=0.194 Sum_probs=124.0
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHHHHc---------CCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCce
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSGTIA---------GLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTF 553 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa~~A---------G~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTt 553 (840)
..+|++.|..+...+++.+++..... -++.+.+++||.+|.+++..+.. ........++||||||+|+
T Consensus 103 ~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~---~~~~~~~~~lVIDIG~~Tt 179 (320)
T TIGR03739 103 DQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHG---KLLTGKEQSLIIDPGYFTF 179 (320)
T ss_pred CEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCC---CcccCcCcEEEEecCCCee
Confidence 57999999999988999999987532 34678899999999888765432 1112456789999999999
Q ss_pred EEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEe
Q psy7262 554 DVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKST 633 (840)
Q Consensus 554 Dis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~ 633 (840)
|+.+++-. .+ +...
T Consensus 180 D~~~~~~~-----------------------------------------------------------------~~-~~~~ 193 (320)
T TIGR03739 180 DWLVARGM-----------------------------------------------------------------RL-VQKR 193 (320)
T ss_pred eeehccCC-----------------------------------------------------------------EE-cccc
Confidence 99766311 00 0111
Q ss_pred eCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHH
Q psy7262 634 AGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARF 713 (840)
Q Consensus 634 ~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~ 713 (840)
.+....|-..+-+.+.+.+.++ ++........ .+-...+.-| . +.+ .+. .+.|+ +.+
T Consensus 194 s~s~~~G~~~~~~~I~~~i~~~----~g~~~~~~~~---~i~~~l~~g~-------~--~~~----~gk--~~di~-~~~ 250 (320)
T TIGR03739 194 SGSVNGGMSDIYRLLAAEISKD----IGTPAYRDID---RIDLALRTGK-------Q--PRI----YQK--PVDIK-RCL 250 (320)
T ss_pred cCCchhHHHHHHHHHHHHHHhh----cCCCCccCHH---HHHHHHHhCC-------c--eee----cce--ecCch-HHH
Confidence 2224567666666666655543 3332101111 1111111111 0 000 011 12232 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHH
Q psy7262 714 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 714 e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a 788 (840)
+ .....++.+...|...+ + ...+++.|+|+||++. .+++.|++.||...+....||..|.|+|-..++
T Consensus 251 ~-~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 251 E-LAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred H-HHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 2 22333333333333333 1 2245889999999998 678999999988777677899999999987665
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-09 Score=121.53 Aligned_cols=205 Identities=18% Similarity=0.160 Sum_probs=127.0
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeec
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
..+++|.|..++..+|+.|.+.+ +..+++.+.+..+|.+|++++...... .......+-||||+|.|+|+++.+--+
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~--~~~~g~~tglVVDiG~~~T~i~PV~~G 180 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKA--KELGGTLTGTVIDSGDGVTHVIPVVDG 180 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccc--cccCCceeEEEEECCCCceEEEEEECC
Confidence 46899999999999999987776 455999999999999998876332111 001123356999999999998765321
Q ss_pred cCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCch
Q psy7262 562 DGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 641 (840)
Q Consensus 562 ~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG 641 (840)
. + +.....-..+||
T Consensus 181 ~--------------------------------------------~----------------------l~~~~~~~~~GG 194 (414)
T PTZ00280 181 Y--------------------------------------------V----------------------IGSSIKHIPLAG 194 (414)
T ss_pred E--------------------------------------------E----------------------cccceEEecCcH
Confidence 0 0 000001146899
Q ss_pred hhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCC-----------------eeEEEEecccCCeee
Q psy7262 642 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST-----------------QASIEIDSLFEGVDF 704 (840)
Q Consensus 642 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------------~~~i~i~~~~~~~~~ 704 (840)
.++++.|.+.|.+. +..+... .....++..|+.+.... ...+.+.....+...
T Consensus 195 ~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~ 264 (414)
T PTZ00280 195 RDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPY 264 (414)
T ss_pred HHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCcc
Confidence 99999999887542 1111111 01123455555543210 011222222223334
Q ss_pred EEEEehHHHH---HHHHHHH------HHHHHHHHHHHHHcCCC--ccCccEEEEEcCCCCcHHHHHHHHhHc
Q psy7262 705 YTSITRARFE---ELNADLF------RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFF 765 (840)
Q Consensus 705 ~~~itr~e~e---~~~~~~i------~~i~~~i~~~l~~a~~~--~~~Id~V~LvGG~s~~p~v~~~l~~~f 765 (840)
.+.|..+.|. -++.|.+ ..+.++|.+++.++... ..-.+.|+|+||+|.+|.+.++|++.+
T Consensus 265 ~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El 336 (414)
T PTZ00280 265 TVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDV 336 (414)
T ss_pred EEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHH
Confidence 6777777774 3555532 25677888888776433 223577999999999999999998877
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.9e-09 Score=118.79 Aligned_cols=224 Identities=20% Similarity=0.246 Sum_probs=132.6
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeec
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
..++++.|..++...|+.|.+.+ +..|++.+.++.+|.+|+++++. .+-||||+|.+.|.++.+--+
T Consensus 95 ~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~------------~tglVVD~G~~~t~v~pV~dG 162 (393)
T PF00022_consen 95 HPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGR------------TTGLVVDIGYSSTSVVPVVDG 162 (393)
T ss_dssp SEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTB------------SSEEEEEESSS-EEEEEEETT
T ss_pred ceeeeeccccCCchhhhhhhhhhhcccccceeeeeeccccccccccc------------ccccccccceeeeeeeeeeec
Confidence 68999999999999998877766 57799999999999999887743 356999999999988766311
Q ss_pred cCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCch
Q psy7262 562 DGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 641 (840)
Q Consensus 562 ~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG 641 (840)
- ++. .......+||
T Consensus 163 ~-~~~-----------------------------------------------------------------~~~~~~~~GG 176 (393)
T PF00022_consen 163 Y-VLP-----------------------------------------------------------------HSIKRSPIGG 176 (393)
T ss_dssp E-E-G-----------------------------------------------------------------GGBEEES-SH
T ss_pred c-ccc-----------------------------------------------------------------cccccccccH
Confidence 0 000 0001146899
Q ss_pred hhhhhHHHHHHHHHH-H--HhccCCcc----ccHHHHHHHHHHHHHHHHHc---------------CCCCeeEEEEeccc
Q psy7262 642 EDFDNRMVNHFVQEF-K--RKYKKDLT----TNKRALRRLRTACERAKRTL---------------SSSTQASIEIDSLF 699 (840)
Q Consensus 642 ~~~d~~l~~~l~~~~-~--~~~~~~~~----~~~~~~~~L~~~~e~~K~~L---------------s~~~~~~i~i~~~~ 699 (840)
.+++..+.+.|..+- . ..+..... ........-...++..|+.+ .......+.++
T Consensus 177 ~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP--- 253 (393)
T PF00022_consen 177 DDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP--- 253 (393)
T ss_dssp HHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---
Confidence 999999988887631 0 00000000 00000001111222333221 12222333332
Q ss_pred CCeeeEEEEehHHHH---HHHHHHH------------HHHHHHHHHHHHHcCCCcc--CccEEEEEcCCCCcHHHHHHHH
Q psy7262 700 EGVDFYTSITRARFE---ELNADLF------------RGTMEPVEKSLRDAKMDKA--QIHDIVLVGGSTRIPKVQKLLQ 762 (840)
Q Consensus 700 ~~~~~~~~itr~e~e---~~~~~~i------------~~i~~~i~~~l~~a~~~~~--~Id~V~LvGG~s~~p~v~~~l~ 762 (840)
++. .+.+..+.+. -++.|.. ..+.++|.+++........ -.+.|+|+||+|.+|.+.++|.
T Consensus 254 dg~--~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~ 331 (393)
T PF00022_consen 254 DGQ--TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQ 331 (393)
T ss_dssp TSS--EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHH
T ss_pred ccc--ccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHH
Confidence 222 4566665553 2333322 1577888888887654322 2478999999999999999998
Q ss_pred hHcCC-------CcccCCC-ChhhHHHHHHHHHHH
Q psy7262 763 DFFNG-------KELNKSI-NPDEAVAYGAAVQAA 789 (840)
Q Consensus 763 ~~f~~-------~~v~~~~-~p~~aVA~GAal~a~ 789 (840)
+.+.. .++..+. +|..++=.||+++|.
T Consensus 332 ~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilas 366 (393)
T PF00022_consen 332 QELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILAS 366 (393)
T ss_dssp HHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHT
T ss_pred HHhhhhhhccccceeccCchhhhhcccccceeeec
Confidence 77622 2445555 899999999999995
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.1e-09 Score=112.65 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcC--CCcccCCCChhhHHHHHHH
Q psy7262 711 ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGAA 785 (840)
Q Consensus 711 ~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~--~~~v~~~~~p~~aVA~GAa 785 (840)
+++.+.++..++++.+.|.+.+. ...+++.|+||||++. .+.+.|++.++ ...+....||+.|-|+|-+
T Consensus 246 ~~v~~~i~~~~~~l~~~i~~~~~----~~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 246 DDVSEVIEEAVEELINRILRELG----DFSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TS-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 34445555555555555554443 2346889999999986 68999999985 4577888899999999965
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-08 Score=111.35 Aligned_cols=214 Identities=17% Similarity=0.199 Sum_probs=134.4
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeec
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
..+++|-|..+...+|+.+.+.+ +..|++.+.++.+|.+|+++++ ..+-||||+|.++|+++.+--+
T Consensus 102 ~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g------------~~tglVVDiG~~~t~v~pV~dG 169 (378)
T PTZ00004 102 HPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG------------RTTGIVLDSGDGVSHTVPIYEG 169 (378)
T ss_pred CcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC------------CceEEEEECCCCcEEEEEEECC
Confidence 57889999999999998776655 6689999999999999987762 2356999999999988765211
Q ss_pred cCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCch
Q psy7262 562 DGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 641 (840)
Q Consensus 562 ~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG 641 (840)
.. +.......++||
T Consensus 170 --------------------------------------------~~----------------------l~~~~~~~~~GG 183 (378)
T PTZ00004 170 --------------------------------------------YS----------------------LPHAIHRLDVAG 183 (378)
T ss_pred --------------------------------------------EE----------------------eecceeeecccH
Confidence 00 000111146899
Q ss_pred hhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCC---------------C--eeEEEEecccCCeee
Q psy7262 642 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS---------------T--QASIEIDSLFEGVDF 704 (840)
Q Consensus 642 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~---------------~--~~~i~i~~~~~~~~~ 704 (840)
.+++..|.+.|... +..+... .. ...++..|+.+... . ...+. +.++.
T Consensus 184 ~~lt~~L~~lL~~~-----~~~~~~~--~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~---lPdg~-- 248 (378)
T PTZ00004 184 RDLTEYMMKILHER-----GTTFTTT--AE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE---LPDGT-- 248 (378)
T ss_pred HHHHHHHHHHHHhc-----CCCCCcH--HH---HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE---CCCCC--
Confidence 99999988877432 1111111 00 11233444433210 0 11222 22332
Q ss_pred EEEEehHHHH---HHHHHH------HHHHHHHHHHHHHHcCCC--ccCccEEEEEcCCCCcHHHHHHHHhHc----CC--
Q psy7262 705 YTSITRARFE---ELNADL------FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFF----NG-- 767 (840)
Q Consensus 705 ~~~itr~e~e---~~~~~~------i~~i~~~i~~~l~~a~~~--~~~Id~V~LvGG~s~~p~v~~~l~~~f----~~-- 767 (840)
.+.+..+.|. -++.|. ...+.++|.+++.++..+ ..-...|+|+||+|.+|.+.++|+..+ |.
T Consensus 249 ~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~ 328 (378)
T PTZ00004 249 IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTM 328 (378)
T ss_pred EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCc
Confidence 3456665553 355553 235667788887776433 223477999999999999999998776 21
Q ss_pred -CcccCCCChhhHHHHHHHHHHH
Q psy7262 768 -KELNKSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 768 -~~v~~~~~p~~aVA~GAal~a~ 789 (840)
.++..+.++..++=.||+++|.
T Consensus 329 ~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 329 KIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred cEEEecCCCCceeEEECcccccC
Confidence 1344455677788889888875
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.5e-08 Score=108.34 Aligned_cols=214 Identities=16% Similarity=0.202 Sum_probs=132.9
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeec
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
..+++|-|..++..+|+.|.+.+ +..+++.+.+...|.+++++++ ..+-||||+|.|.|.++-+--+
T Consensus 101 ~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g------------~~tglVVDiG~~~t~v~PV~dG 168 (375)
T PTZ00452 101 QPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG------------KTIGLVVDSGEGVTHCVPVFEG 168 (375)
T ss_pred CceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC------------CceeeeecCCCCcceEEEEECC
Confidence 57899999999999999987766 5578899999999999987662 2356999999999988765311
Q ss_pred cCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCch
Q psy7262 562 DGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 641 (840)
Q Consensus 562 ~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG 641 (840)
- -+........+||
T Consensus 169 ~------------------------------------------------------------------~l~~~~~r~~~gG 182 (375)
T PTZ00452 169 H------------------------------------------------------------------QIPQAITKINLAG 182 (375)
T ss_pred E------------------------------------------------------------------EeccceEEeeccc
Confidence 0 0000011145789
Q ss_pred hhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCC--------------C--eeEEEEecccCCeeeE
Q psy7262 642 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS--------------T--QASIEIDSLFEGVDFY 705 (840)
Q Consensus 642 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~--------------~--~~~i~i~~~~~~~~~~ 705 (840)
.++++.|.+.|... +..+.... . ...++..|+.+... . ...+.+ .++. .
T Consensus 183 ~~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~L---PDg~--~ 247 (375)
T PTZ00452 183 RLCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKL---PDGN--I 247 (375)
T ss_pred hHHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEEC---CCCC--E
Confidence 88888887766421 11111100 0 01133344433211 0 112222 2332 3
Q ss_pred EEEehHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCC--ccCccEEEEEcCCCCcHHHHHHHHhHc----CC-C--
Q psy7262 706 TSITRARFE---ELNADLF-----RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFF----NG-K-- 768 (840)
Q Consensus 706 ~~itr~e~e---~~~~~~i-----~~i~~~i~~~l~~a~~~--~~~Id~V~LvGG~s~~p~v~~~l~~~f----~~-~-- 768 (840)
+.+..+.|. -++.|.+ ..+.++|.+++..+... ..-.+.|+|+||+|.+|.+.++|++.+ |. .
T Consensus 248 i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v 327 (375)
T PTZ00452 248 LTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKI 327 (375)
T ss_pred EEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCcee
Confidence 566666663 3555543 25667777777765432 223578999999999999999998776 22 1
Q ss_pred cccCCCChhhHHHHHHHHHHH
Q psy7262 769 ELNKSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 769 ~v~~~~~p~~aVA~GAal~a~ 789 (840)
++..+.++..++=.|+.++|.
T Consensus 328 ~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 328 QVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred EEecCCCcceeEEECchhhcC
Confidence 244445666777889988885
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=111.62 Aligned_cols=216 Identities=18% Similarity=0.225 Sum_probs=135.4
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeec
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
..+++|-|..+...+|+.|.+.+ +..+++.+.+...|.+++++++ ..+-||||+|.+.|.++-+--+
T Consensus 102 ~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g------------~~tglVVDiG~~~t~v~PV~dG 169 (376)
T PTZ00281 102 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG------------RTTGIVMDSGDGVSHTVPIYEG 169 (376)
T ss_pred CeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC------------CceEEEEECCCceEEEEEEEec
Confidence 57899999999999999988754 6689999999999999987662 2366999999999987654221
Q ss_pred cCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCch
Q psy7262 562 DGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 641 (840)
Q Consensus 562 ~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG 641 (840)
-. +........+||
T Consensus 170 ~~------------------------------------------------------------------~~~~~~~~~~GG 183 (376)
T PTZ00281 170 YA------------------------------------------------------------------LPHAILRLDLAG 183 (376)
T ss_pred cc------------------------------------------------------------------chhheeeccCcH
Confidence 00 000111156899
Q ss_pred hhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCC--------------eeEEEEecccCCeeeEEE
Q psy7262 642 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST--------------QASIEIDSLFEGVDFYTS 707 (840)
Q Consensus 642 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~--------------~~~i~i~~~~~~~~~~~~ 707 (840)
.++++.|.+.|... +..+... .. ...++..|+.+..-. ....... +.++. .+.
T Consensus 184 ~~lt~~L~~lL~~~-----~~~~~~~--~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~-LPdg~--~i~ 250 (376)
T PTZ00281 184 RDLTDYMMKILTER-----GYSFTTT--AE---REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE-LPDGQ--VIT 250 (376)
T ss_pred HHHHHHHHHHHHhc-----CCCCCcH--HH---HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEE-CCCCC--EEE
Confidence 99999888776432 1111110 00 123445555543111 0011111 22222 355
Q ss_pred EehHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--ccCccEEEEEcCCCCcHHHHHHHHhHc----CC---Ccc
Q psy7262 708 ITRARF---EELNADLF-----RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFF----NG---KEL 770 (840)
Q Consensus 708 itr~e~---e~~~~~~i-----~~i~~~i~~~l~~a~~~--~~~Id~V~LvGG~s~~p~v~~~l~~~f----~~---~~v 770 (840)
|..+.| |.++.|.+ ..+.++|.+++..+... ..-.+.|+|+||+|.+|.+.++|++.+ |. .++
T Consensus 251 i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v 330 (376)
T PTZ00281 251 IGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKI 330 (376)
T ss_pred eeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEE
Confidence 665555 24555533 25667777777765432 223468999999999999999988776 22 134
Q ss_pred cCCCChhhHHHHHHHHHHH
Q psy7262 771 NKSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 771 ~~~~~p~~aVA~GAal~a~ 789 (840)
..+.++..++=.||.++|+
T Consensus 331 ~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 331 IAPPERKYSVWIGGSILAS 349 (376)
T ss_pred ecCCCCceeEEECcccccC
Confidence 4555777888899998885
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-07 Score=104.35 Aligned_cols=216 Identities=16% Similarity=0.158 Sum_probs=134.0
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeec
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
..+++|-|..+...+|+.|.+.+ +..+++.+.+..+|.+|+++++ ..+-+|||+|.+.|.+.-+--+
T Consensus 107 ~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g------------~~tglVVD~G~~~t~v~PV~~G 174 (380)
T PTZ00466 107 HPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCG------------KTNGTVLDCGDGVCHCVSIYEG 174 (380)
T ss_pred CeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcC------------CceEEEEeCCCCceEEEEEECC
Confidence 57889999999999999986655 6678999999999999987762 2466999999999987654211
Q ss_pred cCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCch
Q psy7262 562 DGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 641 (840)
Q Consensus 562 ~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG 641 (840)
- .+........+||
T Consensus 175 ~------------------------------------------------------------------~~~~~~~~~~~GG 188 (380)
T PTZ00466 175 Y------------------------------------------------------------------SITNTITRTDVAG 188 (380)
T ss_pred E------------------------------------------------------------------EeecceeEecCch
Confidence 0 0000111146899
Q ss_pred hhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCC-------------CeeEEEEecccCCeeeEEEE
Q psy7262 642 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS-------------TQASIEIDSLFEGVDFYTSI 708 (840)
Q Consensus 642 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-------------~~~~i~i~~~~~~~~~~~~i 708 (840)
.++++.|.+.|.+. +...... .-...++..|+.+... ........ +.++. .+.|
T Consensus 189 ~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~-LPdg~--~i~l 255 (380)
T PTZ00466 189 RDITTYLGYLLRKN-----GHLFNTS-----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYI-LPDGS--QILI 255 (380)
T ss_pred hHHHHHHHHHHHhc-----CCCCCcH-----HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEE-CCCCc--EEEE
Confidence 99988888776421 1111110 1112244455443210 00011111 22322 3556
Q ss_pred ehHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCC--ccCccEEEEEcCCCCcHHHHHHHHhHc----CC---Cccc
Q psy7262 709 TRARFE---ELNADLF-----RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFF----NG---KELN 771 (840)
Q Consensus 709 tr~e~e---~~~~~~i-----~~i~~~i~~~l~~a~~~--~~~Id~V~LvGG~s~~p~v~~~l~~~f----~~---~~v~ 771 (840)
..+.|. -++.|.+ ..+.++|.+.+.++..+ ..-...|+|+||+|.+|.+.++|++.+ |. ..+.
T Consensus 256 ~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~ 335 (380)
T PTZ00466 256 GSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRIS 335 (380)
T ss_pred chHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEe
Confidence 666663 3555532 25667777777765433 223578999999999999999998877 21 1244
Q ss_pred CCCChhhHHHHHHHHHHH
Q psy7262 772 KSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 772 ~~~~p~~aVA~GAal~a~ 789 (840)
.+.++..++=.||+++|.
T Consensus 336 ~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 336 APPERKFSTFIGGSILAS 353 (380)
T ss_pred cCCCCceeEEECchhhcC
Confidence 455666777889988885
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-07 Score=105.00 Aligned_cols=184 Identities=14% Similarity=0.187 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEeecchHHHHHHhh-cccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCcee
Q psy7262 495 DSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG-LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNV 573 (840)
Q Consensus 495 ~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~-~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~ 573 (840)
....+.+.++++.||++...+..+|.|.+-.+. +..... ....+..+++++|||++||+++++.-+.
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~-~~~~~~~~~~lvdiG~~~t~l~i~~~g~----------- 209 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLA-SRTYRLTDAALVDIGATSSTLNLLHPGR----------- 209 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCc-cccccCceEEEEEECCCcEEEEEEECCe-----------
Confidence 456777899999999999999999999876553 111100 0011222489999999999999885321
Q ss_pred EEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHH
Q psy7262 574 LIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653 (840)
Q Consensus 574 ~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~ 653 (840)
+.+ .....+||.++++.+.+.+.
T Consensus 210 ---------------------------------~~~------------------------~r~i~~G~~~i~~~i~~~~~ 232 (348)
T TIGR01175 210 ---------------------------------MLF------------------------TREVPFGTRQLTSELSRAYG 232 (348)
T ss_pred ---------------------------------EEE------------------------EEEeechHHHHHHHHHHHcC
Confidence 110 11256899999988865441
Q ss_pred HHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHH
Q psy7262 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLR 733 (840)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~ 733 (840)
. -...||+.|........ .-.+++++.++++...|.+.++
T Consensus 233 --------~-----------~~~~Ae~~k~~~~~~~~---------------------~~~~~~~~~~~~l~~eI~~~l~ 272 (348)
T TIGR01175 233 --------L-----------NPEEAGEAKQQGGLPLL---------------------YDPEVLRRFKGELVDEIRRSLQ 272 (348)
T ss_pred --------C-----------CHHHHHHHHhcCCCCCc---------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 1 12456777764321100 0123455556666666666654
Q ss_pred Hc--CCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCccc-------------------CCCChhhHHHHHHHHHH
Q psy7262 734 DA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN-------------------KSINPDEAVAYGAAVQA 788 (840)
Q Consensus 734 ~a--~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~-------------------~~~~p~~aVA~GAal~a 788 (840)
-. ......++.|+|+||+++++.+.+.+++.+ +.++. ....|..++|.|+|+++
T Consensus 273 ~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 273 FFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLPTEVANPFALMALDAKVDAGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred hhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCCeEecChHHhcccCccCCHHHHHhhhHHHHHHhhHhhcC
Confidence 32 222346899999999999999999999998 33221 11356778889988764
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.2e-07 Score=100.00 Aligned_cols=190 Identities=20% Similarity=0.284 Sum_probs=108.8
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCc
Q psy7262 485 AVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGI 564 (840)
Q Consensus 485 vVitVPa~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~ 564 (840)
.++++|- ..-+...++++.||++...+=-+|.|.+-.+...... .......+.++++|||+.+|.++++.-+
T Consensus 129 ll~Aa~k----~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~-~~~~~~~~~~~lvdiG~~~t~~~i~~~g--- 200 (340)
T PF11104_consen 129 LLVAAPK----EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQ-LPDEEDAETVALVDIGASSTTVIIFQNG--- 200 (340)
T ss_dssp EEEEEEH----HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHT-ST----T-EEEEEEE-SS-EEEEEEETT---
T ss_pred EEEEEcH----HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHh-CCcccccceEEEEEecCCeEEEEEEECC---
Confidence 4444543 5666788899999999887766777655444331110 1111234578999999999998887522
Q ss_pred ccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhh
Q psy7262 565 FEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDF 644 (840)
Q Consensus 565 ~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~ 644 (840)
.++| .....+||..+
T Consensus 201 -----------------------------------------~~~f------------------------~R~i~~G~~~l 215 (340)
T PF11104_consen 201 -----------------------------------------KPIF------------------------SRSIPIGGNDL 215 (340)
T ss_dssp -----------------------------------------EEEE------------------------EEEES-SHHHH
T ss_pred -----------------------------------------EEEE------------------------EEEEeeCHHHH
Confidence 1111 11257899999
Q ss_pred hhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHH
Q psy7262 645 DNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGT 724 (840)
Q Consensus 645 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i 724 (840)
++++++.+--.+ ..+|..|..-+-.. +...+.+.+.++++
T Consensus 216 ~~~i~~~~~i~~-------------------~~Ae~~k~~~~l~~---------------------~~~~~~l~~~~~~l 255 (340)
T PF11104_consen 216 TEAIARELGIDF-------------------EEAEELKRSGGLPE---------------------EYDQDALRPFLEEL 255 (340)
T ss_dssp HHHHHHHTT--H-------------------HHHHHHHHHT---------------------------HHHHHHHHHHHH
T ss_pred HHHHHHhcCCCH-------------------HHHHHHHhcCCCCc---------------------chHHHHHHHHHHHH
Confidence 999987753222 24555555421100 22234455555555
Q ss_pred HHHHHHHHH--HcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcc---------cCCC----------ChhhHHHHH
Q psy7262 725 MEPVEKSLR--DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL---------NKSI----------NPDEAVAYG 783 (840)
Q Consensus 725 ~~~i~~~l~--~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v---------~~~~----------~p~~aVA~G 783 (840)
..-|.+.++ ........|+.|+|+||+++++.|.+.|++.+ +.++ ..+. .|..+||.|
T Consensus 256 ~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~G 334 (340)
T PF11104_consen 256 AREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALG 334 (340)
T ss_dssp HHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhHHHHHHH
Confidence 555555555 22233457999999999999999999999999 4322 1111 366799999
Q ss_pred HHHHH
Q psy7262 784 AAVQA 788 (840)
Q Consensus 784 Aal~a 788 (840)
+|++.
T Consensus 335 LAlR~ 339 (340)
T PF11104_consen 335 LALRG 339 (340)
T ss_dssp HHHHH
T ss_pred HhhcC
Confidence 99874
|
|
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.9e-05 Score=92.09 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=64.1
Q ss_pred eeEEEEehHHHHHHHH---HHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCC-----------
Q psy7262 703 DFYTSITRARFEELNA---DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK----------- 768 (840)
Q Consensus 703 ~~~~~itr~e~e~~~~---~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~----------- 768 (840)
+..+.|+..++...+- -.|.+....+-+++..- +.|.++|+|=-|++|.|+..+.+..|=.
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 4568899999988774 56666666666666653 4678999999999999999999997411
Q ss_pred --------cccCCCChhhHHHHHHHHHHHHHc
Q psy7262 769 --------ELNKSINPDEAVAYGAAVQAAILH 792 (840)
Q Consensus 769 --------~v~~~~~p~~aVA~GAal~a~~l~ 792 (840)
+-.+..||-+.||.||.+-+....
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 112455999999999987775444
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00012 Score=77.63 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=41.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhHcCCCccc-CCCChhhHHHHHHHHHHHH
Q psy7262 743 HDIVLVGGSTRIPKVQKLLQDFFNGKELN-KSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 743 d~V~LvGG~s~~p~v~~~l~~~f~~~~v~-~~~~p~~aVA~GAal~a~~ 790 (840)
..|+|+||.++.|.+++.+++.+ +.++. .+.+|+.+-|.|||++|..
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 35899999999999999999999 66665 5778999999999999954
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00016 Score=77.29 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHh
Q psy7262 448 EVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAY 526 (840)
Q Consensus 448 ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y 526 (840)
+++.+.++|.++.- +.... ...-++||-|++=+.+.|+.+.+.+ +...++...++.+|.++|++.
T Consensus 86 D~~~~~w~~~~~~~---Lk~~p-----------~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~ 151 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQ---LKVNP-----------EEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFAN 151 (426)
T ss_pred HHHHHHHHHHHhhh---hhcCc-----------cccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhc
Confidence 67777777776432 21111 2257899999988788887766554 667888889999999998866
Q ss_pred hcccccCCCCCCCCceEEEEecCCCceEEEEE
Q psy7262 527 GLDKKVGSTAGSGERNVLIFDLGGGTFDVSIL 558 (840)
Q Consensus 527 ~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~ 558 (840)
...+.||||||++++.++-+
T Consensus 152 ------------GrstalVvDiGa~~~svsPV 171 (426)
T KOG0679|consen 152 ------------GRSTALVVDIGATHTSVSPV 171 (426)
T ss_pred ------------CCCceEEEEecCCCceeeee
Confidence 34567999999999877655
|
|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00012 Score=83.12 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=52.7
Q ss_pred ceEEEeeCCCCCHHHHHHHHHH-HHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEe
Q psy7262 483 SNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILT 559 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~A-a~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~ 559 (840)
..+++|-|..+....|+.+.+. .+...+..+.+..++.+++++.+.. ..+.+|+|+|.+.|+++-+-
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~----------~~~g~ViD~G~~~t~v~PV~ 174 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSS----------DETGLVIDSGDSVTHVIPVV 174 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCC----------CCceEEEEcCCCceeeEeee
Confidence 5899999999999888876654 4667788888888888887765322 14779999999999987664
|
|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.6e-05 Score=78.53 Aligned_cols=67 Identities=28% Similarity=0.407 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCcc-EEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHH
Q psy7262 714 EELNADLFRGTMEPVEKSLRDAKMDKAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 786 (840)
Q Consensus 714 e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id-~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal 786 (840)
+++++.+++.+...+.+.+.... ++ .|+|+||.+++|++.+.+++.+ +.++..+.+|..+.|.|||+
T Consensus 180 ~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 180 EDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHh
Confidence 34555666666666666554432 44 7999999999999999999999 78888899999999999996
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0096 Score=67.82 Aligned_cols=66 Identities=9% Similarity=0.198 Sum_probs=46.0
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhc-cCCccceEEEeeCCCCCHHHHHHHHHHHHHc
Q psy7262 443 TFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAY-LGKTVSNAVITVPAYFNDSQRQATKDSGTIA 508 (840)
Q Consensus 443 ~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~-~~~~~~~vVitVPa~~~~~~r~~l~~Aa~~A 508 (840)
.++-..+.+.+|..+..+|..+++...++.-..-. ..+....+.+|+|.-....+|+.+|+-+..|
T Consensus 423 ~ySRSslmTfML~EilaqAl~qiNsp~tR~kl~~~~aPR~LRsiILTlPsAmPk~EreIfr~r~~eA 489 (1014)
T COG4457 423 CYSRSSLMTFMLSEILAQALSQINSPATRLKLRHKDAPRQLRSIILTLPSAMPKQEREIFRQRMEEA 489 (1014)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhcCHHHhhhhccCCchHhhhhheeeCCccCCchHHHHHHHHHHHH
Confidence 45667888999999998888877654433322111 1123368999999999988888877776665
|
|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00018 Score=80.37 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=54.2
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHHHH------------cCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCC
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSGTI------------AGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGG 550 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa~~------------AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGG 550 (840)
.-.+||.+... ++.++++++. ||++.-.++. |.|++.+...+ .++..++++||||
T Consensus 89 ~ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse--------Eke~gVa~IDIGg 155 (475)
T PRK10719 89 GAVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE--------ERNTRVLNIDIGG 155 (475)
T ss_pred cEEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh--------hccCceEEEEeCC
Confidence 46677777644 4556666665 5555444444 88888866532 2678899999999
Q ss_pred CceEEEEEeeccCcccCCCCceeEEEecCCCccc
Q psy7262 551 GTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFD 584 (840)
Q Consensus 551 GTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d 584 (840)
|||++++++-+. ..+.-.+++||..+.
T Consensus 156 GTT~iaVf~~G~-------l~~T~~l~vGG~~IT 182 (475)
T PRK10719 156 GTANYALFDAGK-------VIDTACLNVGGRLIE 182 (475)
T ss_pred CceEEEEEECCE-------EEEEEEEecccceEE
Confidence 999999997542 122334567776443
|
|
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=68.12 Aligned_cols=50 Identities=26% Similarity=0.322 Sum_probs=37.8
Q ss_pred ccCccEEEEEcCCCCcHHHHHHHHhHcCCC-------cccCCCChhhHHHHHHHHHH
Q psy7262 739 KAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 739 ~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~-------~v~~~~~p~~aVA~GAal~a 788 (840)
..+|+.|+||||++.-.-|-++|.+.+..- .|.-..-|..|||.|+++.-
T Consensus 273 iR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 273 IRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp CCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHHH
T ss_pred cccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHhh
Confidence 357999999999999888888888887432 45556679999999999653
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0064 Score=64.51 Aligned_cols=161 Identities=16% Similarity=0.234 Sum_probs=93.6
Q ss_pred HHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeEEEe
Q psy7262 498 RQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFD 577 (840)
Q Consensus 498 r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~~d 577 (840)
.....+|+++|||+...+=-|..|.--.|..... ..........|+|+|||+-.|-+.++.-+.
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~-~~~~~~a~~~vav~~Igat~s~l~vi~~gk--------------- 214 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLAS-QFGPEEAAMKVAVFDIGATSSELLVIQDGK--------------- 214 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHH-HhCCchhhhhheeeeecccceEEEEEECCe---------------
Confidence 4446789999999887776677777555541111 011111122368899999888887764220
Q ss_pred cCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHHHHH
Q psy7262 578 LGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 657 (840)
Q Consensus 578 ~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~ 657 (840)
. .| .....+||+.+..++.+.+--.+
T Consensus 215 -----------------------------~-------------------ly-----~r~~~~g~~Qlt~~i~r~~~L~~- 240 (354)
T COG4972 215 -----------------------------I-------------------LY-----TREVPVGTDQLTQEIQRAYSLTE- 240 (354)
T ss_pred -----------------------------e-------------------ee-----EeeccCcHHHHHHHHHHHhCCCh-
Confidence 0 01 12367899998888765542111
Q ss_pred HhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy7262 658 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKM 737 (840)
Q Consensus 658 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~~a~~ 737 (840)
..++.+|....... +. .-+-+...+..++++|.+.|+-.+..++
T Consensus 241 ------------------~~a~~~k~~~~~P~-----------~y------~~~vl~~f~~~l~~ei~Rslqfy~~~s~- 284 (354)
T COG4972 241 ------------------EKAEEIKRGGTLPT-----------DY------GSEVLRPFLGELTQEIRRSLQFYLSQSE- 284 (354)
T ss_pred ------------------hHhHHHHhCCCCCC-----------ch------hHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 13455554433211 00 0122223333444444444444444443
Q ss_pred CccCccEEEEEcCCCCcHHHHHHHHhHc
Q psy7262 738 DKAQIHDIVLVGGSTRIPKVQKLLQDFF 765 (840)
Q Consensus 738 ~~~~Id~V~LvGG~s~~p~v~~~l~~~f 765 (840)
..+|+.++|.||++.+-.|.+.|.+.+
T Consensus 285 -~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 285 -MVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred -cceeeEEEEecCCcchhhHHHHHHHHh
Confidence 347999999999999999999999998
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0092 Score=64.56 Aligned_cols=45 Identities=31% Similarity=0.338 Sum_probs=43.0
Q ss_pred EEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHH
Q psy7262 745 IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 745 V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~ 790 (840)
|+|+||.+....+.+++++.+ +.+|..|.+|+..-|.|||++|..
T Consensus 346 iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhh
Confidence 999999999999999999999 789999999999999999999964
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.01 Score=62.32 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCc----ccCCCChhhHHHHHHHHHH
Q psy7262 719 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE----LNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 719 ~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~----v~~~~~p~~aVA~GAal~a 788 (840)
.+...+.+.+...+++.+.. -+.|+|+||.++.+.+.+.+++.+++.+ +..+.+|+.+-|.|||++|
T Consensus 192 Gl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 192 GIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 34444444444444443211 1359999999999999999999885433 5556789999999999874
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.004 Score=68.86 Aligned_cols=46 Identities=33% Similarity=0.413 Sum_probs=42.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHH
Q psy7262 743 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 743 d~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~ 789 (840)
+.|+++||.++.+.+.+.+++.+ +.++..+.+|+.+-|.|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 35999999999999999999999 77888899999999999999985
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.013 Score=64.22 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=41.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhHcC----CCcccCCCChhhHHHHHHHHHH
Q psy7262 743 HDIVLVGGSTRIPKVQKLLQDFFN----GKELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 743 d~V~LvGG~s~~p~v~~~l~~~f~----~~~v~~~~~p~~aVA~GAal~a 788 (840)
..|+|+||.++.+.+.+.+++.+. +.++..+.+|+.+-|.|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999984 4668889999999999999875
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0029 Score=68.40 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHH
Q psy7262 715 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 786 (840)
Q Consensus 715 ~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal 786 (840)
.+++-..+.+.+.|++.....+..+.+. .++.+||.+ |++...+.+.++-..+..+..|.-+-|.||++
T Consensus 215 ~i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 215 GIVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 3444455566666666655556555432 244556655 78888888888555677776778889999984
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.014 Score=64.35 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=33.8
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhHc----CC-C--cccCCCChhhHHHHHHHHHHH
Q psy7262 740 AQIHDIVLVGGSTRIPKVQKLLQDFF----NG-K--ELNKSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 740 ~~Id~V~LvGG~s~~p~v~~~l~~~f----~~-~--~v~~~~~p~~aVA~GAal~a~ 789 (840)
.-...|+|+||++..|.+.+++.+.+ |+ . ++..+.+...+|=.|+.+.|+
T Consensus 289 ~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 289 DLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred HHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEee
Confidence 34578999999999999999998876 21 1 234443333556667666663
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0065 Score=61.68 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-ccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHH
Q psy7262 713 FEELNADLFRGTMEPVEKSLRDAKMD-KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 713 ~e~~~~~~i~~i~~~i~~~l~~a~~~-~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~ 790 (840)
..+++..+++.+.-.++..++..... ...++.|+++||.++++.+.+.+.+.+ +.+|....+ .++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 34455555555555555554444211 234789999999999999999999999 777766644 88999999999864
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.099 Score=58.41 Aligned_cols=125 Identities=15% Similarity=0.157 Sum_probs=85.2
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCCHHHHHH-HHHHHHHcCCcEEEeecchH
Q psy7262 442 KTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQA-TKDSGTIAGLNVLRIINEPT 520 (840)
Q Consensus 442 ~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~~~~r~~-l~~Aa~~AG~~~v~~v~Ep~ 520 (840)
...+..++++++-+-+.-...+.+..+.... ..-++|+-||-.|.....+. ++-.....||..+.++-|..
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl--------~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESl 266 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKL--------FQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESL 266 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHh--------cceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhh
Confidence 4456667777654433322333443333111 12689999999999776544 55566778999999999999
Q ss_pred HHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeee
Q psy7262 521 AAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIE 591 (840)
Q Consensus 521 AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~ 591 (840)
||.+..++. ..-|||||+-+|-|++++-+ +.. .+.-+.++.||.++++..+.+.
T Consensus 267 aatfGaGls------------s~CVVdiGAQkTsIaCVEdG--vs~---~ntri~L~YGGdDitr~f~~ll 320 (618)
T KOG0797|consen 267 AATFGAGLS------------SACVVDIGAQKTSIACVEDG--VSL---PNTRIILPYGGDDITRCFLWLL 320 (618)
T ss_pred HHHhcCCcc------------ceeEEEccCcceeEEEeecC--ccc---cCceEEeccCCchHHHHHHHHH
Confidence 998766543 24799999999999998754 211 2335678999999998766543
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.05 Score=64.37 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=62.7
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHH
Q psy7262 709 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 709 tr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a 788 (840)
+|..+..++..+++.+.=.++..++........++.|.++||.++++...+.+.+.+ +.+|....++ ++.++|||++|
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA 488 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYVN-EAVLHGAAMLG 488 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecChh-HHHHHHHHHHH
Confidence 466667777777777765555555544322235788999999999999999999999 8888777555 47799999999
Q ss_pred HHHcC
Q psy7262 789 AILHG 793 (840)
Q Consensus 789 ~~l~~ 793 (840)
+.-.|
T Consensus 489 ~~~~G 493 (541)
T TIGR01315 489 AKAAG 493 (541)
T ss_pred HHhcC
Confidence 76555
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.054 Score=64.14 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHH
Q psy7262 716 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~ 790 (840)
+++.+++.+.=.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.+|.....+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 34445555554444444444332 45789999999999999999999999 7778766555 6789999999975
|
|
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.046 Score=63.79 Aligned_cols=52 Identities=29% Similarity=0.408 Sum_probs=45.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|+++||+++++...+.+.+.+ +.+|....+.+++.+.|||++|+.-.|
T Consensus 386 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G 437 (484)
T PRK15027 386 KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_pred CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcC
Confidence 4788999999999999999999999 888866656777889999999987665
|
|
| >KOG0680|consensus | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.66 Score=49.30 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=28.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHc----CC---CcccCCCChhhH
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFF----NG---KELNKSINPDEA 779 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f----~~---~~v~~~~~p~~a 779 (840)
-+..|+++||.|..|..+++|+..+ |. ..+..+.||..-
T Consensus 317 l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~ 362 (400)
T KOG0680|consen 317 LLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITF 362 (400)
T ss_pred HHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCccee
Confidence 3567999999999999999998876 21 245566666543
|
|
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.062 Score=57.53 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=42.9
Q ss_pred CccEEEEEc-CCCCcHHHHHHHHhHcC--CCcccCCCChhhHHHHHHHHHHH
Q psy7262 741 QIHDIVLVG-GSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 741 ~Id~V~LvG-G~s~~p~v~~~l~~~f~--~~~v~~~~~p~~aVA~GAal~a~ 789 (840)
.+..|+++| |.+..|.+++.+.+.+. +.++..+.+|..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356899999 79999999999998873 56788899999999999999875
|
|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.11 Score=61.04 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 715 ELNADLFRGTMEPVEKSLRDAK-MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 715 ~~~~~~i~~i~~~i~~~l~~a~-~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++..+++.+.-.++..++... .....++.|.++||+++++...+.+.+.+ +.+|.... ..++.|+|||+.|+.-.|
T Consensus 376 ~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 376 HIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEecC-cccchHHHHHHHHhhhcC
Confidence 3444455555444444433332 11224788999999999999999999999 78886654 446889999999976555
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.5 Score=53.92 Aligned_cols=83 Identities=24% Similarity=0.356 Sum_probs=61.1
Q ss_pred EEEehHHHHHHHHHHHHHHH---HHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHH
Q psy7262 706 TSITRARFEELNADLFRGTM---EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 782 (840)
Q Consensus 706 ~~itr~e~e~~~~~~i~~i~---~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~ 782 (840)
+.-+.+.+-.+....++.+. +.|-+++++.+ -.|+.|+..||-.+.|.+.+.+.+.. +.++..+ ..+++++.
T Consensus 396 L~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~ll 470 (544)
T COG1069 396 LDTSPESLALLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLL 470 (544)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhh
Confidence 34445555566655555553 44555566655 45899999999999999999999998 6666666 67789999
Q ss_pred HHHHHHHHHcC
Q psy7262 783 GAAVQAAILHG 793 (840)
Q Consensus 783 GAal~a~~l~~ 793 (840)
|+|+.++--.+
T Consensus 471 GsAm~~avAag 481 (544)
T COG1069 471 GAAMFAAVAAG 481 (544)
T ss_pred HHHHHHHHHhc
Confidence 99999875554
|
|
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.11 Score=61.77 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCC-CCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 716 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
++..+++.+.-.+...++........++.|.++||+ ++++.+.+.+.+.+ +.+|.... +.++.|.|||++|+.-.|
T Consensus 413 l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 413 IYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVVA-SDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEecC-ccccchHHHHHHHHHHhc
Confidence 344444444433333333222122347889999999 99999999999999 77776554 456889999999986554
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.13 Score=60.41 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 716 LNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~~l~~a~~-~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
++..+++.+.-.++..++.... ....++.|.++||.++++.+.+.+.+.+ +.+|..... .++.|.|||+.|+.-.|
T Consensus 380 i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 380 IVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPEM-AETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecCc-ccchHHHHHHHHHhhcC
Confidence 4444455554444444433221 1224788999999999999999999999 878876654 44789999999986655
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.11 Score=60.25 Aligned_cols=75 Identities=15% Similarity=0.241 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHH
Q psy7262 715 ELNADLFRGTMEPVEK---SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 791 (840)
Q Consensus 715 ~~~~~~i~~i~~~i~~---~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l 791 (840)
.++..+++.+.-.++. .+++.+ ...++.|.++||++++|...+.+.+.+ +.+|....++ ++.++|||+.|+.-
T Consensus 366 ~l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~-e~~~lGaA~~a~~a 441 (465)
T TIGR02628 366 HIYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDDA-ETTVAGAAMFGFYG 441 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccCC-cchHHHHHHHHHHh
Confidence 3444455554444443 344432 224788999999999999999999999 7888766554 57799999999865
Q ss_pred cC
Q psy7262 792 HG 793 (840)
Q Consensus 792 ~~ 793 (840)
.|
T Consensus 442 ~G 443 (465)
T TIGR02628 442 VG 443 (465)
T ss_pred cC
Confidence 54
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.13 Score=60.86 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCC-CCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 716 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
+++.+++.+.-.++..++........++.|.++||+ ++++.+.+.+.+.| +.+|....++ ++.|.|||+.|+.-.|
T Consensus 410 ~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~~-e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 410 LYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVASD-QAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccCC-cchhHHHHHHHHHHcC
Confidence 344444444433333333322122357899999999 99999999999999 7888766554 5779999999987665
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.11 Score=60.68 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 716 LNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~~l~~a~~-~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
++..+++.+.-.++..++.... ....++.|.++||+++++...+.+.+.+ +.+|..... .++.|+|||+.|+.-.|
T Consensus 373 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~~~-~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 373 IARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRPKV-TETTALGAAYAAGLAVG 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEecCC-CcchHHHHHHHHHhhcC
Confidence 3444444444444444333321 1234789999999999999999999999 788866544 46779999999976655
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.13 Score=59.88 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=54.8
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHcCC-CccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHH
Q psy7262 709 TRARFEELNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 787 (840)
Q Consensus 709 tr~e~e~~~~~~i~~i~~~i~~~l~~a~~-~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~ 787 (840)
+|.++ +..+++.+.-.++..++.... ....++.|.++||+++++...+.+.+.+ +.+|.... ..++.++|||+.
T Consensus 359 ~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~l 433 (470)
T PRK10331 359 TRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAMF 433 (470)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHHH
Confidence 45554 444444444333333333221 1235789999999999999999999999 77886664 446889999999
Q ss_pred HHHHcC
Q psy7262 788 AAILHG 793 (840)
Q Consensus 788 a~~l~~ 793 (840)
|+.-.|
T Consensus 434 a~~~~G 439 (470)
T PRK10331 434 GWYGVG 439 (470)
T ss_pred HHHhcC
Confidence 976554
|
|
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.15 Score=59.53 Aligned_cols=51 Identities=35% Similarity=0.576 Sum_probs=44.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|.++||.++++.+.+.+.+.+ +.+|.... ..++.|.|||++|+.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~~-~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVPE-GEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeecC-CCcchHHHHHHHHHHhcC
Confidence 4789999999999999999999999 77787664 556889999999987665
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.18 Score=57.62 Aligned_cols=77 Identities=22% Similarity=0.321 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCc-cCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCC
Q psy7262 716 LNADLFRGTMEPVEKSLRDAKMDK-AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 794 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~~l~~a~~~~-~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~ 794 (840)
+....++.|.-.+++.|+...... ..|+.+.+.||.|+.|.+.+.+.+.+ +.++..+.+++. |+.|||++|+..+++
T Consensus 388 ia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 388 LARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcCC
Confidence 333445555444444444433333 57889999999999999999999999 688988888887 999999999988874
|
|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.77 Score=51.99 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=45.3
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHcCCcEEEee---cchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEee
Q psy7262 484 NAVITVPAYFNDSQRQATKDSGTIAGLNVLRII---NEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTI 560 (840)
Q Consensus 484 ~vVitVPa~~~~~~r~~l~~Aa~~AG~~~v~~v---~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~ 560 (840)
-|.||==.-=...++..+...+..||==++.-. .|..=|+...+...- .......|+=+|||||||-+++++-
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~----S~~~~~~V~NiDIGGGTtN~avf~~ 162 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAAL----SKEHHTVVANIDIGGGTTNIAVFDN 162 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHH----hhhhCCeEEEEEeCCCceeEEEEEC
Confidence 456665555566777778888888872121111 244444333222111 1124567899999999999999986
Q ss_pred cc
Q psy7262 561 ED 562 (840)
Q Consensus 561 ~~ 562 (840)
+.
T Consensus 163 G~ 164 (473)
T PF06277_consen 163 GE 164 (473)
T ss_pred CE
Confidence 53
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.19 Score=59.05 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=43.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|.++||.++++...+.+.+.+ +.+|....++ ++.+.|||++|+.-.|
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGLKALG 451 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHHHhcC
Confidence 5789999999999999999999999 7888766555 5789999999986655
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.18 Score=58.38 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=42.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|.++||++++++..+.+.+.+ +.+|... +.++.|.|||+.|+.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999 7777644 356889999999986554
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.2 Score=58.94 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHc----CC--CccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHH
Q psy7262 715 ELNADLFRGTMEPVEKSLRDA----KM--DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 715 ~~~~~~i~~i~~~i~~~l~~a----~~--~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a 788 (840)
++++.+++.+.=.++..++.. +. ....++.|.++||+++++.+.+.+.+.+ +.+|..+. ..++.|+|||+.|
T Consensus 380 ~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~~A 457 (512)
T PLN02295 380 HIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRPA-DIETTALGAAYAA 457 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEecC-ccccHHHHHHHHH
Confidence 344445555544444444432 21 2235788999999999999999999999 88886654 4468899999999
Q ss_pred HHHcC
Q psy7262 789 AILHG 793 (840)
Q Consensus 789 ~~l~~ 793 (840)
+.-.+
T Consensus 458 ~~~~G 462 (512)
T PLN02295 458 GLAVG 462 (512)
T ss_pred HhhcC
Confidence 76655
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.24 Score=58.35 Aligned_cols=51 Identities=25% Similarity=0.368 Sum_probs=43.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|.++||+++++...+.+.+.+ +.+|....++ ++.++|||++|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 4789999999999999999999999 8888766545 5779999999976655
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.27 Score=57.17 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=42.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|.++||+++++...+.+.+.+ +.+|.... .++.+.|||+.|+.-.|
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999 77775543 37889999999976555
|
|
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.37 Score=53.43 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=45.8
Q ss_pred HcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHH
Q psy7262 734 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 734 ~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~ 790 (840)
..+......+.|++|||.|+...|-+.|.+.| +.++... +...+.|.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 34555557789999999999999999999999 7777655 7777899999999764
|
|
| >PLN02666 5-oxoprolinase | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.8 Score=53.97 Aligned_cols=77 Identities=12% Similarity=0.080 Sum_probs=48.5
Q ss_pred EehHHHHHHHHHHH-HHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHH
Q psy7262 708 ITRARFEELNADLF-RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 786 (840)
Q Consensus 708 itr~e~e~~~~~~i-~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal 786 (840)
++-++....+..+. +.+.+.|+......+.++.+. .++..|| .=|...-.|.+.++-..++.+.+|.-.-|.|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGG--agp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGG--AGPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecC--cHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 45555554333333 445566666666666665432 2333344 4478888899999555588888898888999885
Q ss_pred H
Q psy7262 787 Q 787 (840)
Q Consensus 787 ~ 787 (840)
-
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 4
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.93 Score=53.17 Aligned_cols=51 Identities=27% Similarity=0.325 Sum_probs=38.8
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHH
Q psy7262 740 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 791 (840)
Q Consensus 740 ~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l 791 (840)
..++.|.++||+|++++..+.+.+.+ +.++..+...+.+.+-||++.+...
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~e~~a~g~A~~~~~~~ 450 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVEEAGALGGAALAAAAL 450 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcccchHHHHHHHHHHHh
Confidence 34678999999999999999999999 8788766555555555555555444
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.21 Score=56.37 Aligned_cols=49 Identities=18% Similarity=0.368 Sum_probs=42.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhHcC-------CCcccCCCChhhHHHHHHHHHHHH
Q psy7262 742 IHDIVLVGGSTRIPKVQKLLQDFFN-------GKELNKSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 742 Id~V~LvGG~s~~p~v~~~l~~~f~-------~~~v~~~~~p~~aVA~GAal~a~~ 790 (840)
|+.|+||||+|.+|.+.++|+..+- ...|....||....=+||+.+|+.
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 7899999999999999999998873 235677889999999999999864
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=88.93 E-value=1.1 Score=48.01 Aligned_cols=71 Identities=25% Similarity=0.328 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhH----cCCCcccCCCChhhHHHHHHHHHH
Q psy7262 715 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF----FNGKELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 715 ~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~----f~~~~v~~~~~p~~aVA~GAal~a 788 (840)
++++...+.+.+.+...+.+...... .|+|+||....+.+++.+.+. .+..++..+..|....|.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 34455555666666666666543322 299999999998777777444 344456677789999999999986
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=87.65 E-value=1.2 Score=41.37 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=14.9
Q ss_pred EEEEecCCCceEEEEEeec
Q psy7262 543 VLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 543 vLVvDiGGGTtDis~~~~~ 561 (840)
|+++|||++|+.+.+++.+
T Consensus 1 i~~iDiGs~~~~~~i~~~~ 19 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG 19 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT
T ss_pred CEEEEcCCCcEEEEEEEeC
Confidence 5789999999999888754
|
|
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=87.47 E-value=2.2 Score=43.95 Aligned_cols=221 Identities=17% Similarity=0.233 Sum_probs=121.3
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeec
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
..+.+|-|.-=....|+.|-+.. +..||.-+.+.-...-+ -|+... ..-+|||-|-|-|-+.-+--+
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLt--LYAQGL----------~tGvVvDSGDGVTHi~PVye~ 169 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLT--LYAQGL----------LTGVVVDSGDGVTHIVPVYEG 169 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHH--HHHhcc----------cceEEEecCCCeeEEeeeecc
Confidence 58999999988888888876654 67899887765443333 232211 123789999997765432100
Q ss_pred cCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCch
Q psy7262 562 DGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 641 (840)
Q Consensus 562 ~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG 641 (840)
..+.-+ ..-..+.|
T Consensus 170 ----------------------------------------------------------------~~l~HL--trRldvAG 183 (389)
T KOG0677|consen 170 ----------------------------------------------------------------FVLPHL--TRRLDVAG 183 (389)
T ss_pred ----------------------------------------------------------------eehhhh--hhhccccc
Confidence 000000 11145788
Q ss_pred hhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCC-----------CeeEEEEe--cccCCeeeEEEE
Q psy7262 642 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS-----------TQASIEID--SLFEGVDFYTSI 708 (840)
Q Consensus 642 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------~~~~i~i~--~~~~~~~~~~~i 708 (840)
+++.+-+.+.|+.+=- .+.+.. + ...++..|+.|.-. .++++-++ .+.+|. .+.+
T Consensus 184 RdiTryLi~LLl~rGY-afN~tA--D-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGR--vIkv 251 (389)
T KOG0677|consen 184 RDITRYLIKLLLRRGY-AFNHTA--D-------FETVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGR--VIKV 251 (389)
T ss_pred hhHHHHHHHHHHhhcc-cccccc--c-------hHHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCc--EEEe
Confidence 9998888887764310 111100 0 11223334433211 01111111 122332 2455
Q ss_pred ehHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCc--cCccEEEEEcCCCCcHHHHHHHHhHcCC-----------
Q psy7262 709 TRARFE---ELNADLF-----RGTMEPVEKSLRDAKMDK--AQIHDIVLVGGSTRIPKVQKLLQDFFNG----------- 767 (840)
Q Consensus 709 tr~e~e---~~~~~~i-----~~i~~~i~~~l~~a~~~~--~~Id~V~LvGG~s~~p~v~~~l~~~f~~----------- 767 (840)
--+.|+ .+++|.+ ..+.+++-++++.+.++. .--.+|+|.||++.-|.+-.++++.+..
T Consensus 252 G~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~ 331 (389)
T KOG0677|consen 252 GGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDT 331 (389)
T ss_pred cceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCCh
Confidence 556664 4666643 345666677777665542 2347899999999999988888766521
Q ss_pred -----Cccc--CCCChhhHHHHHHHHHHHHHcC
Q psy7262 768 -----KELN--KSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 768 -----~~v~--~~~~p~~aVA~GAal~a~~l~~ 793 (840)
-++. .+..---.|-.|.|.+|..+..
T Consensus 332 ~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 332 DKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred hhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 1122 2222234577777777876664
|
|
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.12 E-value=20 Score=38.69 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=18.8
Q ss_pred CCceEEEEecCCCceEEEEEeec
Q psy7262 539 GERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 539 ~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
+...|+=+||||||+.+|++.-+
T Consensus 143 r~t~v~NlDIGGGTtN~slFD~G 165 (473)
T COG4819 143 RLTRVLNLDIGGGTTNYSLFDAG 165 (473)
T ss_pred hceEEEEEeccCCccceeeeccc
Confidence 44568999999999999998543
|
|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=83.43 E-value=2.4 Score=45.27 Aligned_cols=47 Identities=21% Similarity=0.100 Sum_probs=40.2
Q ss_pred cCccEEEEEcC-CCCcHHHHHHHHhHc--CCCcccCCCChhhHHHHHHHH
Q psy7262 740 AQIHDIVLVGG-STRIPKVQKLLQDFF--NGKELNKSINPDEAVAYGAAV 786 (840)
Q Consensus 740 ~~Id~V~LvGG-~s~~p~v~~~l~~~f--~~~~v~~~~~p~~aVA~GAal 786 (840)
..+..|+++|| ....|.+++.+...+ .+.++..+.++...+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45788999999 778999999998875 346778889999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.28 E-value=6.2 Score=46.17 Aligned_cols=58 Identities=26% Similarity=0.346 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEe
Q psy7262 497 QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILT 559 (840)
Q Consensus 497 ~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~ 559 (840)
....+.++-+..|++.-.+--|-||--.+.+.....+ ..+..+|+|||||+|.+++++
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~-----~~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTG-----GADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccC-----CCCCEEEEEecCCeeeEEEec
Confidence 3444666667779977444444555433334444322 223589999999999999875
|
|
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.12 E-value=4.3 Score=45.97 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=57.2
Q ss_pred EEEehHH-HHHHHHHHHHHHHHHHHHHHHHcCCCcc-CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHH
Q psy7262 706 TSITRAR-FEELNADLFRGTMEPVEKSLRDAKMDKA-QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 783 (840)
Q Consensus 706 ~~itr~e-~e~~~~~~i~~i~~~i~~~l~~a~~~~~-~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~G 783 (840)
+-|||.- -+.+++..++.+.=...+.++....... .++.+-+=||++++.++.+...+.+ +.+|.++. -.+..|.|
T Consensus 365 ~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~-~~EtTAlG 442 (499)
T COG0554 365 FGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPV-VLETTALG 442 (499)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeeccc-cchhhHHH
Confidence 4455432 2334444555554444444443322211 5778888899999999999999999 78888774 44677999
Q ss_pred HHHHHHHHcC
Q psy7262 784 AAVQAAILHG 793 (840)
Q Consensus 784 Aal~a~~l~~ 793 (840)
||++|..-.|
T Consensus 443 aA~lAGla~G 452 (499)
T COG0554 443 AAYLAGLAVG 452 (499)
T ss_pred HHHHHhhhhC
Confidence 9999976555
|
|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=82.05 E-value=25 Score=38.54 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCC---cccCCCCh----hhHHHHHHHHHHH
Q psy7262 717 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK---ELNKSINP----DEAVAYGAAVQAA 789 (840)
Q Consensus 717 ~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~---~v~~~~~p----~~aVA~GAal~a~ 789 (840)
++.+++.+.+.|...+.. ..+++.|+|.|-.+++|-+++.+++.|.+. ++. ...+ ....|.|||+.|.
T Consensus 240 ~ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 240 WEAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred HHHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhh
Confidence 344445555555544333 235688999999999999988888887332 221 1222 2347999999998
Q ss_pred HHcCCC
Q psy7262 790 ILHGDK 795 (840)
Q Consensus 790 ~l~~~~ 795 (840)
.+.+..
T Consensus 315 glaGG~ 320 (343)
T PF07318_consen 315 GLAGGR 320 (343)
T ss_pred hhhccc
Confidence 888744
|
The function of this family is unknown. |
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.90 E-value=6.3 Score=45.70 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEe
Q psy7262 498 RQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILT 559 (840)
Q Consensus 498 r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~ 559 (840)
.+.+..+-+..|++.-.+--|-||--.+.+.-...+ .....+|+|||||+|.+++..
T Consensus 91 ~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~-----~~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 91 DEFLARVEKELGLPIEVISGEEEARLIYLGVASTLP-----RKGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred HHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCC-----CCCCEEEEEecCCeEEEEEec
Confidence 445888888889977555556666655555544432 256789999999999999875
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=80.59 E-value=6.4 Score=46.27 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEee
Q psy7262 498 RQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTI 560 (840)
Q Consensus 498 r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~ 560 (840)
...+.++-+..|++.-.+--|-||...+.+.....+ .....+|+|||||+|.+++++-
T Consensus 99 ~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~-----~~~~~lvvDIGGGStEl~~~~~ 156 (513)
T PRK10854 99 TDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQP-----EKGRKLVIDIGGGSTELVIGEN 156 (513)
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccC-----CCCCeEEEEeCCCeEEEEEecC
Confidence 344556666679877444444455433334444332 2246899999999999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 840 | |||
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 0.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 1e-100 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 1e-164 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 1e-74 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 1e-159 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 1e-154 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 1e-159 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 1e-155 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 1e-153 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 1e-152 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 1e-66 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 1e-149 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 1e-142 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 1e-103 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 1e-100 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 3e-04 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 2e-99 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 3e-04 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 1e-97 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 3e-04 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 1e-78 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 9e-06 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 3e-74 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 2e-04 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 9e-72 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 5e-09 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 2e-68 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 2e-52 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 2e-08 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 4e-44 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 6e-37 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 9e-36 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 8e-25 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 3e-16 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 3e-10 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 2e-04 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 7e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 9e-08 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 2e-06 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 9e-05 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 9e-05 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 1e-04 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 2e-04 |
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 796 bits (2058), Expect = 0.0
Identities = 332/472 (70%), Positives = 361/472 (76%), Gaps = 81/472 (17%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRLIGR+F
Sbjct: 19 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRF 78
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
+DA VQ+DMKHWPF VV+D G+PK++VEYKGE K+F+PEEVSSMVLTKMKE AE
Sbjct: 79 DDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAE------ 132
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
AYLGKTV+NAV+TVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAAIAYGL
Sbjct: 133 -------AYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 185
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSIL 588
DKK ERNVLIFDLGGGTFDVSILTI GIFE V G T
Sbjct: 186 DKK-----VGAERNVLIFDLGGGTFDVSILTIAAGIFE------VK--STAGDTH----- 227
Query: 589 TIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 648
LGG FD ++ N
Sbjct: 228 ----------------------LGGEDFDNRMV------------------------NHF 241
Query: 649 VNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSI 708
+ F ++ K KD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSI
Sbjct: 242 IAEFKRKHK----KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSI 297
Query: 709 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK 768
TRARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGK
Sbjct: 298 TRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGK 357
Query: 769 ELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
ELNKSINPDEAVAYGAAVQAAIL GDKSE VQDLLLLDVTPLSLGIETAGGV
Sbjct: 358 ELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGV 409
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 320 bits (823), Expect = e-100
Identities = 130/145 (89%), Positives = 139/145 (95%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPR
Sbjct: 410 MTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPR 469
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAED
Sbjct: 470 GVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAED 529
Query: 121 EKQKAVISAKNSLESYCFNMKSTVE 145
EKQ+ +S+KNSLESY FNMK+TVE
Sbjct: 530 EKQRDKVSSKNSLESYAFNMKATVE 554
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 488 bits (1259), Expect = e-164
Identities = 198/483 (40%), Positives = 270/483 (55%), Gaps = 105/483 (21%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
+ ++ N +G+RTTPS +A+T E L+G AK Q NP NT+F KRLIGR+F
Sbjct: 18 IMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRF 77
Query: 409 EDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+D VQ D+ PF+++ +D G ++V+ + P ++S+ VL KMK+TAE YLG+
Sbjct: 78 QDEEVQRDVSIMPFKIIAADNGDAWVEVK----GQKMAPPQISAEVLKKMKKTAEDYLGE 133
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
V+ AVIT VPAYFND+QRQATKD+G IAGL V RIINEPTAAA+AYG
Sbjct: 134 PVTEAVIT-------------VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE----DGIFEGSGERNVLIFDLGGGTF 583
LDK +G R + ++DLGGGTFD+SI+ I+ + FE VL G T
Sbjct: 181 LDKG------TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFE------VL--ATNGDTH 226
Query: 584 DVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 643
LGG FD
Sbjct: 227 ---------------------------LGGEDFD-------------------------- 233
Query: 644 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 703
+R++N+ V+EFK+ DL + A++RL+ A E+AK LSS+ Q +++ + D
Sbjct: 234 --SRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLPYITAD 289
Query: 704 ------FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 757
+TRA+ E L DL ++EP++ +L+DA + + I D++LVGG TR+P V
Sbjct: 290 ATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMV 349
Query: 758 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETA 817
QK + +FF GKE K +NPDEAVA GAAVQ +L GD V+D+LLLDVTPLSLGIET
Sbjct: 350 QKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETM 404
Query: 818 GGV 820
GGV
Sbjct: 405 GGV 407
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 254 bits (651), Expect = 1e-74
Identities = 83/203 (40%), Positives = 117/203 (57%), Gaps = 6/203 (2%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI +NTTIPTK +Q F+T DNQ V I V +GER DN LG+F L I PAPR
Sbjct: 408 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPR 467
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
G+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G L++++I++MV DAE D
Sbjct: 468 GMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAEANAEAD 526
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
K ++ +N + + + VE+ DK+ ++T I + L +K
Sbjct: 527 RKFDELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTALETALKGE---DK 581
Query: 181 EEFEHKQKELEAICNPIITKLYQ 203
E K +EL + ++ Q
Sbjct: 582 AAIEAKMQELAQVSQKLMEIAQQ 604
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 469 bits (1209), Expect = e-159
Identities = 182/218 (83%), Positives = 191/218 (87%), Gaps = 16/218 (7%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRLIGRKF
Sbjct: 38 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKF 97
Query: 409 EDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKT 468
EDATVQ+DMKHWPF VVS+GGKPK++VEYKGE KTFFPEE+SSMVLTKMKE AE
Sbjct: 98 EDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAE------ 151
Query: 469 VSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 528
AYLG V +AVITVPAYFNDSQRQATKD+GTI GLNVLRIINEPTAAAIAYGL
Sbjct: 152 -------AYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGL 204
Query: 529 DKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 566
DKK + GE+NVLIFDLGGGTFDVSILTIEDGIFE
Sbjct: 205 DKKGCA---GGEKNVLIFDLGGGTFDVSILTIEDGIFE 239
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 459 bits (1184), Expect = e-155
Identities = 174/198 (87%), Positives = 187/198 (94%)
Query: 597 RSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 656
+ GE+NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV+H +EF
Sbjct: 207 KGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEF 266
Query: 657 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 716
KRK+KKD+ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EGVDFYTSITRARFEEL
Sbjct: 267 KRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEEL 326
Query: 717 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 776
NADLFRGT+EPVEK+LRDAK+DK QI +IVLVGGSTRIPK+QKLLQDFFNGKELNKSINP
Sbjct: 327 NADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINP 386
Query: 777 DEAVAYGAAVQAAILHGD 794
DEAVAYGAAVQAAIL GD
Sbjct: 387 DEAVAYGAAVQAAILIGD 404
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 453 bits (1169), Expect = e-153
Identities = 176/454 (38%), Positives = 247/454 (54%), Gaps = 101/454 (22%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
+ ++ N +G+RTTPS +A+T E L+G AK Q NP NT+F KRLIGR+F
Sbjct: 18 IMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRF 77
Query: 409 EDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+D VQ D+ PF+++ +D G ++V+ + P ++S+ VL KMK+TAE YLG+
Sbjct: 78 QDEEVQRDVSIMPFKIIAADNGDAWVEVK----GQKMAPPQISAEVLKKMKKTAEDYLGE 133
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
V+ AVIT VPAYFND+QRQATKD+G IAGL V RIINEPTAAA+AYG
Sbjct: 134 PVTEAVIT-------------VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE----DGIFEGSGERNVLIFDLGGGTF 583
LDK +G R + ++DLGGGTFD+SI+ I+ + FE VL + G T
Sbjct: 181 LDKG------TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFE------VLATN--GDTH 226
Query: 584 DVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 643
LGG FD
Sbjct: 227 ---------------------------LGGEDFD-------------------------- 233
Query: 644 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 703
+R++N+ V+EFK+ DL + A++RL+ A E+AK LSS+ Q +++ + D
Sbjct: 234 --SRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLPYITAD 289
Query: 704 ------FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 757
+TRA+ E L DL ++E ++ +L+DA + + I D++LVGG TR+P V
Sbjct: 290 ATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMV 349
Query: 758 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 791
QK + +FF GKE K +NPDEAVA GAAVQ +L
Sbjct: 350 QKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVL 382
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 455 bits (1173), Expect = e-152
Identities = 193/475 (40%), Positives = 262/475 (55%), Gaps = 120/475 (25%)
Query: 350 VFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFE 409
V + G+V++I N +GNRTTPS VAF + ERL+G+ AK Q NPN TI KR +G +
Sbjct: 18 VLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPN-TIISIKRHMGTDY- 75
Query: 410 DATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTV 469
KVE +G K + P+E+S+++L +K AE YLG+ V
Sbjct: 76 ------------------------KVEIEG--KQYTPQEISAIILQYLKSYAEDYLGEPV 109
Query: 470 SNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLD 529
+ AVIT VPAYFND+QRQATKD+G IAGL V RIINEPTAAA+AYGLD
Sbjct: 110 TRAVIT-------------VPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLD 156
Query: 530 KKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILT 589
K+ ++ +L++DLGGGTFDVSIL + DG+FE V G
Sbjct: 157 KE-------EDQTILVYDLGGGTFDVSILELGDGVFE------VKATA--GDNH------ 195
Query: 590 IEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 649
LGG FD ++
Sbjct: 196 ---------------------LGGDDFD----------------------------QVII 206
Query: 650 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-VDFY 705
++ V +FK+++ DL+ +K AL+RL+ A E+AK+ LS TQ I I + G +
Sbjct: 207 DYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLE 266
Query: 706 TSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 765
++TRA+FEEL+A L TM PV ++L+DA + A I ++LVGGSTRIP VQ+ ++
Sbjct: 267 MTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL 326
Query: 766 NGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
GKE +K +NPDE VA GAA+Q ++ G+ V+D++LLDVTPLSLGIET GGV
Sbjct: 327 -GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGV 376
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 1e-66
Identities = 74/134 (55%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
T LI+RNTTIPT ++Q FTT +DNQ V I V +GER M DN LG+F+LT IPPAPR
Sbjct: 377 FTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPR 436
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGI++V A + T KE ITI + G LS+E+I+RM+ +AE+ D
Sbjct: 437 GVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENAEAD 495
Query: 121 EKQKAVISAKNSLE 134
K+K +N +
Sbjct: 496 RKRKEAAELRNEAD 509
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 454 bits (1170), Expect = e-149
Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 3/221 (1%)
Query: 601 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 660
R V D+G ++ SI+ + G +V TA D H GG DFD + HF EFK KY
Sbjct: 194 EKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKY 253
Query: 661 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 720
K D+ N +A R+ TA E+ K+ LS++T A ++S+ VD + ++R EEL L
Sbjct: 254 KIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPL 313
Query: 721 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAV 780
EPV K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N DEA+
Sbjct: 314 LERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAI 372
Query: 781 AYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVS 821
A GAA AI V+ D+ P S+ V
Sbjct: 373 AKGAAFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVE 411
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 434 bits (1118), Expect = e-142
Identities = 68/250 (27%), Positives = 123/250 (49%), Gaps = 25/250 (10%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKF 408
V ++ ++I+ N+ NR+TPS V F R +G+ KN+ N NT+ + KR+IG +
Sbjct: 17 AVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDY 76
Query: 409 EDATVQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGK 467
+ + KH+ ++V D K +V + GE F ++++M + K+K+T +
Sbjct: 77 HHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKA 136
Query: 468 TVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527
+++ I VP ++ + QR D+ IAGLN +RI+N+ TAA ++YG
Sbjct: 137 NITDVCIA-------------VPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 183
Query: 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFE---GSGERNVLIFDLGGGTFD 584
+ K R V D+G ++ SI+ + G + + +++ GG FD
Sbjct: 184 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKH-----FGGRDFD 238
Query: 585 VSILTIEEYF 594
++I E+F
Sbjct: 239 LAIT---EHF 245
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 332 bits (854), Expect = e-103
Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 17/222 (7%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSI--PPA 58
+ ++ P+ + T D T + + +E+T + P
Sbjct: 415 HMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEG 472
Query: 59 PRGVPQIEVTFDIDANGILNV----------TAIEKSTGKENKITITNDRGRLSKEDIER 108
VP +++ D +G+ + + T K++ +TI L + +
Sbjct: 473 QDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNE 531
Query: 109 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDV 168
++ + A+D+ KN+LE Y + ++ +E+E SDAE+T++ N
Sbjct: 532 LIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEE-YAPFASDAEKTKLQGMLNKA 590
Query: 169 IKWL-DANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAP 209
+WL D + K ++ K +EL ++ N I +
Sbjct: 591 EEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKK 632
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 305 bits (784), Expect = e-100
Identities = 91/134 (67%), Positives = 115/134 (85%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI RNT IPTK +TFTTY+DNQPGV IQVYEGERAMT+DN+ LG FEL+ IPPAPR
Sbjct: 19 MTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPR 78
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTF+IDANGILNV+A +KSTGK N+ITI N++GRL++ DI+RMV++A++++ ED
Sbjct: 79 GVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKED 138
Query: 121 EKQKAVISAKNSLE 134
+Q+ + A+N LE
Sbjct: 139 GEQRERVQARNQLE 152
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 806 DVTPLSLGIETAGGV 820
DV PLSLGIETAGGV
Sbjct: 4 DVAPLSLGIETAGGV 18
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 304 bits (781), Expect = 2e-99
Identities = 92/134 (68%), Positives = 112/134 (83%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LIKRNT IPTK++Q F+T DNQP V+I+VYEGERAM+KDNNLLGKFELT IPPAPR
Sbjct: 19 MTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPR 78
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTF +DANGIL V+A +K TGK ITITND+GRL++E+I+RMV +AEK+ +ED
Sbjct: 79 GVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASED 138
Query: 121 EKQKAVISAKNSLE 134
KA + ++N LE
Sbjct: 139 ASIKAKVESRNKLE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 806 DVTPLSLGIETAGGV 820
DV L+LGIET GGV
Sbjct: 4 DVNALTLGIETTGGV 18
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 299 bits (768), Expect = 1e-97
Identities = 83/134 (61%), Positives = 106/134 (79%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI RNT IPTK++Q F+T +D+Q V I +YEGER M DN+ LG F++T IPPAPR
Sbjct: 19 MTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPR 78
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTF+ID NGIL+V+A +K TG +NK+TITND RLS EDIERM+NDA+K+ A+D
Sbjct: 79 GVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADD 138
Query: 121 EKQKAVISAKNSLE 134
+ QK + ++N LE
Sbjct: 139 QAQKEKVESRNELE 152
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 806 DVTPLSLGIETAGGV 820
DV PL+LGIET GGV
Sbjct: 4 DVNPLTLGIETVGGV 18
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 1e-78
Identities = 83/206 (40%), Positives = 118/206 (57%), Gaps = 6/206 (2%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI +NTTIPTK +Q F+T DNQ V I V +GER DN LG+F L I PAPR
Sbjct: 20 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPR 79
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
G+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G L++++I++MV DAE D
Sbjct: 80 GMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAEANAEAD 138
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
K + ++ +N + + + VE+ DK+ ++T I + L +K
Sbjct: 139 RKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTALETALKGE---DK 193
Query: 181 EEFEHKQKELEAICNPIITKLYQGSG 206
E K +EL + ++ Q
Sbjct: 194 AAIEAKMQELAQVSQKLMEIAQQQHA 219
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 802 LLLLDVTPLSLGIETAGGV 820
+LLLDVTPLSLGIET GGV
Sbjct: 1 VLLLDVTPLSLGIETMGGV 19
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 240 bits (616), Expect = 3e-74
Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 6/205 (2%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
+ +I RNTTIP + Q FTT+ D Q + I V +GER + +D L +F L IP P
Sbjct: 17 VEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPA 76
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
G I VTF +DA+G+L+VTA+EKSTG E I + G L+ +I M+ D+ Y +D
Sbjct: 77 GGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSEIASMIKDSMSYAEQD 135
Query: 121 EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180
K + + K ++ + +S AER I D + + + +
Sbjct: 136 VKARMLAEQKVEAARVLESLHGALAA--DAALLSAAERQVIDDAAAHLSEVAQGD---DV 190
Query: 181 EEFEHKQKELEAICNPIITKLYQGS 205
+ E K ++ + S
Sbjct: 191 DAIEQAIKNVDKQTQDFAARRMDQS 215
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 805 LDVTPLSLGIETAGGV 820
+DV PLSLG+ET GG+
Sbjct: 1 MDVIPLSLGLETMGGL 16
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 9e-72
Identities = 80/145 (55%), Positives = 103/145 (71%), Gaps = 1/145 (0%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
T LI RNTTIPTK++Q F+T +D Q V I+V +GER M DN LLG+F L IPPAPR
Sbjct: 39 FTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPR 98
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGI++V+A +K TG+E +I I + G LSK+DIE MV +AEKY ED
Sbjct: 99 GVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGG-LSKDDIENMVKNAEKYAEED 157
Query: 121 EKQKAVISAKNSLESYCFNMKSTVE 145
++K + A N E + ++ +E
Sbjct: 158 RRKKERVEAVNMAEGIIHDTETKME 182
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 5e-09
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 787 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
L + +DVTPLSLGIET GGV
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGV 38
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 2e-68
Identities = 77/134 (57%), Positives = 98/134 (73%), Gaps = 1/134 (0%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI RNTTIPTK++Q F+T +D Q V I+V++GER M N LLG+F L IPPAPR
Sbjct: 19 MTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPR 78
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQ+EVTFDIDANGI+NV+A ++ TGKE +I I + G LSK+ IE M+ +AEK AED
Sbjct: 79 GVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQIENMIKEAEKNAAED 137
Query: 121 EKQKAVISAKNSLE 134
K+K ++ N E
Sbjct: 138 AKRKELVEVINQAE 151
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 2e-52
Identities = 60/99 (60%), Positives = 72/99 (72%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI +NTTIPTK +Q F+T DNQ V I V +GER DN LG+F L I PAPR
Sbjct: 36 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPR 95
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 99
G+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 96 GMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 134
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 788 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 820
++ H + ++DVTPLSLGIET GGV
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGV 35
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 4e-44
Identities = 52/97 (53%), Positives = 70/97 (72%)
Query: 113 AEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL 172
+ + + LESY FN+K T+EDEKLKDKIS ++ +I DKC++++KWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 173 DANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAP 209
D+NQ AEKEEFEH+QK+LE + NPII+KLYQ +GGAP
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAP 99
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 6e-37
Identities = 58/88 (65%), Positives = 71/88 (80%)
Query: 122 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKE 181
+SAKN+LESY FNMKS VEDE LK KIS+A++ ++LDKC +VI WLDAN LAEK+
Sbjct: 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKD 62
Query: 182 EFEHKQKELEAICNPIITKLYQGSGGAP 209
EFEHK+KELE +CNPII+ LYQG+GG
Sbjct: 63 EFEHKRKELEQVCNPIISGLYQGAGGPG 90
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Length = 113 | Back alignment and structure |
|---|
Score = 130 bits (327), Expect = 9e-36
Identities = 57/84 (67%), Positives = 69/84 (82%)
Query: 126 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEH 185
V + LESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 186 KQKELEAICNPIITKLYQGSGGAP 209
+QKELE +CNPIITKLYQ +GG P
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMP 85
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 45/341 (13%), Positives = 87/341 (25%), Gaps = 139/341 (40%)
Query: 448 EVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTI 507
+ ++ ++K E LG + A +P +A
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATA-------------IPPGTVGRNAEACGHVVAG 117
Query: 508 AGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEG 567
AGL ++ +++EP AAA A G++ +
Sbjct: 118 AGLELVTLVDEPVAAARALGINDGI----------------------------------- 142
Query: 568 SGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGI 627
+ D+GGGT ++++ + G T
Sbjct: 143 -------VVDIGGGTTGIAVI---------------------EKGKITATFDE------- 167
Query: 628 FEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 687
GG + + F A E K+ S
Sbjct: 168 ----------PTGGTHLSLVLAGSYKIPF------------------EEA-ETIKKDFSR 198
Query: 688 STQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVL 747
+ + R +E + +++ + Q + +
Sbjct: 199 HREIMRVV--------------------------RPVIEKMALIVKEVIKNYDQTLPVYV 232
Query: 748 VGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 788
VGG+ + + F GKE+ I+P G A+
Sbjct: 233 VGGTAYLTGFSEEFSRFL-GKEVQVPIHPLLVTPLGIALFG 272
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 3e-16
Identities = 28/317 (8%), Positives = 79/317 (24%), Gaps = 103/317 (32%)
Query: 474 ITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 533
+T Y + + + +++ T + G + ++++ E A +
Sbjct: 104 LTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD-- 161
Query: 534 STAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEY 593
++LI DLGG T D+S
Sbjct: 162 -----------------------------------ELDSLLIIDLGGTTLDISQ------ 180
Query: 594 FPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653
+ + + GD+ LG + + +
Sbjct: 181 -----------------------------VMGKLSGISKIYGDSSLGVSLVTSAVKDALS 211
Query: 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARF 713
+ ++ A + + + + I I
Sbjct: 212 LARTK------GSSYLADDIIIHRKDNNYLKQRINDENKISI------------------ 247
Query: 714 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELN 771
+ + +E+ + + + + ++++GG + + ++ +
Sbjct: 248 ---VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFF 302
Query: 772 KSINPDEAVAYGAAVQA 788
K+ N + G +
Sbjct: 303 KTNNSQYDLVNGMYLIG 319
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 3e-10
Identities = 24/193 (12%), Positives = 56/193 (29%), Gaps = 34/193 (17%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
+NV + D GG S+ S G +D R+ +
Sbjct: 171 NKNVAVIDFGGLNMGFSLY---RNCVVNPSERFIEEHGVKDLIIRVGD----ALTDLNNG 223
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
+L TN++A L + + + + I+ +
Sbjct: 224 NLITNEQAESALNNGYMKKGGEIDTESSTVIK------------------------KVKE 259
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 782
++ K + Q+ ++ +GG+T+ +++ + + + N
Sbjct: 260 KFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY-PNNSIITNNSQWTTCE 316
Query: 783 GAAVQAAILHGDK 795
G A + +
Sbjct: 317 GLYKVAVAKYCIQ 329
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 13/118 (11%), Positives = 30/118 (25%), Gaps = 25/118 (21%)
Query: 484 NAVITVPA--YFNDSQRQATKD------------SGTIAGLNVLRIINEPTAAAIAYGLD 529
V+ P N ++ +D + I + + + +
Sbjct: 107 QLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ 166
Query: 530 KKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSI 587
+ +NV + D GG + + S I + G + +
Sbjct: 167 ENFK------NKNVAVIDFGGLNMG--FSLYRNCVVNPS---ERFIEEHGVKDLIIRV 213
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 7e-10
Identities = 54/443 (12%), Positives = 112/443 (25%), Gaps = 139/443 (31%)
Query: 355 KVEIIANDQGNRTT------------PSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKR 402
+ ++ D G T PS A T+TE ++ + T F
Sbjct: 20 HMVVVGLDVGYGDTKVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKF---- 75
Query: 403 LIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAE 462
+ G+ + +E ++ + E+
Sbjct: 76 IYGKYASG----------------------NNIRVPQGDGRLASKEAFPLIAAALWESGI 113
Query: 463 AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 522
G V + + P D + +A K++ L V E
Sbjct: 114 HNDGSPVDLVIGS------------GTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQF 161
Query: 523 AIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGT 582
I +++ +G G ++ L G
Sbjct: 162 NI----------------TRLIMR------------------PQGVG---AALYLLNQGI 184
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
+ ++ D+G T DV + + D V + +G
Sbjct: 185 IEQQ----------------PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVG 227
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 702
D + + +E DL Q ++ +F
Sbjct: 228 DAISALSRKIAKETGFVVPFDL------------------------AQEALSHPVMFRQK 263
Query: 703 DF-YTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 761
++ E+L + +E + +LR + ++ VGG + + +
Sbjct: 264 QVGGPEVSGPILEDLANRI----IENIRLNLRGEVDR---VTSLIPVGGGSNL--IGDRF 314
Query: 762 QDFFNGKELNKSI-NPDEAVAYG 783
++ G + + A A G
Sbjct: 315 EEIAPGTLVKIKPEDLQFANALG 337
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 1e-08
Identities = 73/535 (13%), Positives = 137/535 (25%), Gaps = 169/535 (31%)
Query: 315 FYRSQQLKCFAQNFSHFT-NFIPSHPVSFITSALQGVFQHGKVEIIANDQGNRTTPSYVA 373
F + + S F F+ + + + + +++ I + + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-SKDAVSGTLRL 67
Query: 374 FTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKI 433
F + + V KF + ++ + K + I
Sbjct: 68 FW----TLLSKQEEMVQ----------------KFVEEVLRINYK-FLMS--------PI 98
Query: 434 KVEYKGEA--KTFFPEEVSSM-----VLTKM-------KETAEAYLGKTVSNAVITAY-- 477
K E + + + E+ + V K L + +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 478 --LGKTV-SNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTA-----AAIAYGLD 529
GKT + V + Q D I LN+ + N P + Y +D
Sbjct: 159 LGSGKTWVALDVC------LSYKVQCKMDFK-IFWLNL-KNCNSPETVLEMLQKLLYQID 210
Query: 530 KKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILT 589
S + L + + E +L+ +V
Sbjct: 211 PNWTSRSDHSSNIKL-------RIHSIQAELRRLLKSKPYENCLLVLL------NVQNAK 257
Query: 590 IEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 649
F L +L+ T + + S A TH+ + +
Sbjct: 258 AWNAFNLSC------KILL------------TTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 650 NHFVQEFKRKY----KKDL-----TTNKRAL----RRLR-----------TACERAKRTL 685
V+ KY +DL TTN R L +R C++ +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 686 SSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR--------------GTMEPVE-- 729
SS ++ L + R F+ L+ +F + +
Sbjct: 360 ESS------LNVL------EPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 730 --------KSL--RDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 774
SL + K I I L +L N L++SI
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYL-----------ELKVKLENEYALHRSI 449
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 7e-07
Identities = 86/636 (13%), Positives = 171/636 (26%), Gaps = 213/636 (33%)
Query: 262 KSDKNSTDLFLEVL----ANVIKRQKFLVTYLLKSFACGPEDYIFDKSASLTI---VDQK 314
K + T L ++++ F+ L ++ ++ + + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINY-----KFLMSPIKTEQRQPSMMTR 110
Query: 315 FYRSQQLKCF--AQNFSHFTNFIPS-HPVSFITSALQ------GVFQHG----------- 354
Y Q+ + + Q F+ + + P + AL V G
Sbjct: 111 MYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 355 ------KVEIIANDQ------GNRTTPSYVAFTDTERLIGDAAKNQVAMN--------PN 394
KV+ + + N +P V ++L+ N + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 395 NTIFDAKR--LIGRKFEDA-----TVQADMKHW-PFEV------------VSD--GGKPK 432
++I R L + +E+ VQ + K W F + V+D
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 433 IKVEYKGEAKTFFPEEVSSMVL--TKMKETAEAYLGKTVSNAVITAYLGKTVSNAVIT-- 488
+ + T P+EV S++L + T + + + + +++ + + T
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWD 345
Query: 489 -VPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFD 547
D + S LNVL EP + + +F
Sbjct: 346 NWKHVNCDKLTTIIESS-----LNVL----EPAEYRKMF--------------DRLSVFP 382
Query: 548 LGGGTFDVSI----LTI--EDGIFEGSGE-----RNVLIFDLGGGTFDVSILTIEEYFPL 596
I L++ D I + + +SI +I Y L
Sbjct: 383 P-----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLEL 435
Query: 597 RSWGSGERNV---LI--------FDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLG---- 640
+ E + ++ FD D + H+G
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY-----LDQYFYS--------HIGHHLK 482
Query: 641 ----GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEID 696
E F+ + D ++ +R TA AS I
Sbjct: 483 NIEHPERMT---------LFRMVFL-DFRFLEQKIRHDSTAW-----------NASGSIL 521
Query: 697 SLFEGVDFYTS-ITR--ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 753
+ + + FY I ++E L + + E + T
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK---------------YTD 566
Query: 754 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 789
+ ++ L DEA+ A Q
Sbjct: 567 L--LRIALM------------AEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 1e-06
Identities = 74/552 (13%), Positives = 162/552 (29%), Gaps = 133/552 (24%)
Query: 22 YSDNQPGVLIQVYEGER-AMTKDNNLLGKFELTSIPPAP---RGVPQIEVTFDIDANGIL 77
QP ++ ++Y +R + DN + K+ ++ + P + + ++ ++ +G+L
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 78 ----NVTAIE--KSTGKENK-------ITITNDRGRLSKEDIERMVND-----AEKYKAE 119
A++ S + K + + N S E + M+ + +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN---SPETVLEMLQKLLYQIDPNWTSR 216
Query: 120 DEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ---ILDKCNDVIKWLDANQ 176
+ + +S++ +L+ + +L +V +A
Sbjct: 217 SDHSSNIKLRIHSIQ------------AELRRLLKSKPYENCLLVLL---NV--Q-NAKA 258
Query: 177 LAEKEEFEHKQKELEAICNPIIT-------------KLYQGSGGAPVQPFTTTQV--LCS 221
F C ++T S T +V L
Sbjct: 259 W---NAFNLS-------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 222 K-LFTFHQFYPKSSCFLHNF--NIVGHSSDANFESFWKGGERKKSDKNST--DLFLEVLA 276
K L Q P+ + +I+ S + + W + DK +T + L VL
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 277 NVIKRQKFLVTYLLKSFACGPEDYIFDKSASLTI-----------------VDQKFYRSQ 319
R+ F + +F SA + V K ++
Sbjct: 368 PAEYRKMF------DRLS------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 320 QLKCFAQNFSHFTNFIPSHPVSFITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTER 379
++ + T IPS + H I+ + +T S
Sbjct: 416 LVE---KQPKESTISIPSIYLELKVKLENEYALHRS--IVDHYNIPKTFDSDDLIPPYLD 470
Query: 380 -----LIG---DAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKP 431
IG ++ M +F R + +K + + +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ---- 526
Query: 432 KIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVIT-VP 490
+K YK + + + ++ +L K N + + Y + A++
Sbjct: 527 -LKF-YKP----YICD--NDPKYERLVNAILDFLPKIEENLICSKYT-DLLRIALMAEDE 577
Query: 491 AYFNDSQRQATK 502
A F ++ +Q +
Sbjct: 578 AIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 7e-04
Identities = 60/448 (13%), Positives = 126/448 (28%), Gaps = 132/448 (29%)
Query: 62 VPQIEVTF--DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAE 119
+ E F + D + ++ + LSKE+I+ ++ +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMP-----------------KSILSKEEIDHIIMSKDAVSGT 64
Query: 120 D-------EKQKAVISA--KNSLE-SYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVI 169
KQ+ ++ + L +Y F M +++ ++ Q ND
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 170 KWLDANQLAEKEEFEHKQKELEAICNPIITKLY--QGSGGAPVQPFTTTQVLCSKLFTFH 227
+ N + + +Q LE + + GSG + +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSG---------KTWVALDVC--- 171
Query: 228 QFYPKSSCFLHNFNIVGHSSDANFESFW-KGGERKKSDKNSTDLFLEVLANVIKRQKFLV 286
Y +F I FW NS + LE+L L+
Sbjct: 172 LSYKVQCKM--DFKI-----------FWLNLKNC-----NSPETVLEMLQK-------LL 206
Query: 287 TYLLKSFACGPEDYIFDKSASLTIVDQKFYRSQQLKCFAQNFSHFTNFIPSHPVSFITSA 346
+ ++ + + L I + + LK + +
Sbjct: 207 YQIDPNWTSRSD---HSSNIKLRIHSIQAELRRLLK------------SKPYENCLLV-- 249
Query: 347 LQGVFQHGKVEIIANDQGNRT--TPSYVAFTDTERLIGDAAKNQVAMNPNNTIF---DAK 401
L V Q+ K A + + T + TD + A ++++ ++ + K
Sbjct: 250 LLNV-QNAKA-WNAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLTPDEVK 304
Query: 402 RL----IGRKFED-----------------ATVQADMKHWPF--EVVSDGGKPKIKV--- 435
L + + +D +++ + W V D I+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 436 -----EYKGEAKTF--FPEEV--SSMVL 454
EY+ FP +++L
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILL 392
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 9e-08
Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 34/196 (17%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
E + D G GT + + V+ + + G DF R+ + +K +
Sbjct: 183 EGKYSVLDFGSGTTIIDTY---QNMKRVEEESFVINKGTIDFYKRIAS----HVSKKSEG 235
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
T + + L + + + I+ + F + L
Sbjct: 236 ASITPRMIEKGLEY------KQCKLNQKTVIDF--------------KDEFYKEQDSLIE 275
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 782
M E ++ + I I++ GG I L ++ K+ + +
Sbjct: 276 EVMSNFEITVGNI----NSIDRIIVTGGGANI--HFDSLSHYY-SDVFEKADDSQFSNVR 328
Query: 783 GAAVQAAILHGDKSEE 798
G +L +E
Sbjct: 329 GYEKLGELLKNKVEQE 344
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 718 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 773
+L R +E + S RD + A I I+L+GG + ++ L G ++ +
Sbjct: 397 ENLARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSIL-GMDVTR- 454
Query: 774 INPDEAVAYGAAVQAAILHGDKSEE 798
DE VA GAA QAA + ++E
Sbjct: 455 PATDEYVAIGAARQAAWVLSGETEP 479
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Length = 344 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 9e-05
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 486 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545
VI VP D +R+A D+G AG + + +I EP AAAI L+ V +G+ ++
Sbjct: 99 VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLN--VEEPSGN-----MV 151
Query: 546 FDLGGGTFDVSIL 558
D+GGGT +V+++
Sbjct: 152 VDIGGGTTEVAVI 164
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 9e-05
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 718 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 773
+L R +E V +L D + + L+GG R +++L D G++L+
Sbjct: 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYR 417
Query: 774 INPDEAVAYGAAVQAAI 790
D A GAA A I
Sbjct: 418 TGGDVGPALGAARLAQI 434
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 718 ADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 775
A + +E SLR + ++ + +VGG R +++ D L +
Sbjct: 377 AQILLAVLEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMIADNL-NVSLLVKPD 435
Query: 776 PDEAVAYGAAVQAAI 790
G A AA+
Sbjct: 436 AHLHPLRGLAALAAV 450
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 26/186 (13%)
Query: 583 FDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 642
DV R +R L+ D+G + + +L L G+
Sbjct: 170 LDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLL--RGDKPLA---VRVLTLSGK 224
Query: 643 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 702
DF + F + E KRT +T + + + L +
Sbjct: 225 DFTEAIARSFNLDLLA-------------------AEEVKRTYGMATLPTEDEELLLDFD 265
Query: 703 DFYTSITRARFEELNADLFRGTMEPVEKSLR--DAKMDKAQIHDIVLVGGSTRIPKVQKL 760
+ R + + + + +SL ++++A L+GG +++ + L
Sbjct: 266 AERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASL 325
Query: 761 LQDFFN 766
L D
Sbjct: 326 LTDTLG 331
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 840 | |||
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 100.0 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 100.0 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 99.96 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.96 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 99.95 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 99.95 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.94 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.94 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.93 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.91 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.88 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.88 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.87 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.86 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.86 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.85 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 99.83 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.77 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.76 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 99.74 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.64 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.52 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.48 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.28 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 99.24 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 99.22 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.19 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 99.07 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 99.07 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 99.02 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 98.98 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 98.78 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 97.75 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 97.54 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 95.91 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 95.59 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 95.47 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 95.4 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 95.24 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 95.22 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 95.15 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 95.13 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 94.92 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 94.6 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 94.52 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 94.43 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 94.4 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 94.35 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 94.34 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 94.34 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 94.23 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 94.02 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 93.67 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 92.9 | |
| 3cet_A | 334 | Conserved archaeal protein; Q6M145, MRR63, NESG, X | 90.83 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 90.35 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 87.72 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 84.84 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 84.58 |
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-64 Score=587.05 Aligned_cols=417 Identities=85% Similarity=1.213 Sum_probs=382.2
Q ss_pred CCCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 335 IPSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 335 ~~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
..++||| |||||+||++.+|.+++|+|+.|++++||+|+|+++++++|.+|..++..+|+++++++|+|+|+.+.++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 83 (554)
T 1yuw_A 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 83 (554)
T ss_dssp CCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHH
T ss_pred CCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCCcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHHH
Confidence 3578999 999999999999999999999999999999999988999999999999999999999999999999999888
Q ss_pred HhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCC
Q psy7262 414 QADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYF 493 (840)
Q Consensus 414 ~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~ 493 (840)
+...+.+||.+...++.+.+.+.+.+....++|+++++++|++|++.++.+++..+ .++|||||++|
T Consensus 84 ~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v-------------~~~VitVPa~f 150 (554)
T 1yuw_A 84 QSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTV-------------TNAVVTVPAYF 150 (554)
T ss_dssp HHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCC-------------CEEEEEECTTC
T ss_pred HHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCC-------------CeEEEEECCCC
Confidence 88889999999877888888899988889999999999999999999999988755 79999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCcee
Q psy7262 494 NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNV 573 (840)
Q Consensus 494 ~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~ 573 (840)
++.||+++++|++.||++.+.+++||+|||++|+..... ..+..+||+|+||||+|+|++++.
T Consensus 151 ~~~qr~a~~~A~~~AGl~~~~li~EP~AAAlay~~~~~~-----~~~~~vlV~D~GgGT~Dvsv~~~~------------ 213 (554)
T 1yuw_A 151 NDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKV-----GAERNVLIFDLGGGTFDVSILTIA------------ 213 (554)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTCSTTC-----SSCEEEEEEEECSSCEEEEEEEEE------------
T ss_pred CHHHHHHHHHHHHHcCCCeEEEeCcHHHHHHHHHhhccC-----CCCcEEEEEEcCCCeEEEEEEEEc------------
Confidence 999999999999999999999999999999999876532 146789999999999999988653
Q ss_pred EEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHH
Q psy7262 574 LIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653 (840)
Q Consensus 574 ~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~ 653 (840)
++.+++++..++..+||.+||.+|++++.
T Consensus 214 ---------------------------------------------------~g~~~v~a~~g~~~lGG~d~d~~l~~~l~ 242 (554)
T 1yuw_A 214 ---------------------------------------------------AGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242 (554)
T ss_dssp ---------------------------------------------------TTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------CCcEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23456777788899999999999999999
Q ss_pred HHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHH
Q psy7262 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLR 733 (840)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~ 733 (840)
++++++++.++..+++.+.+|+.+||++|+.||......+.++.+.++.++...|+|++|+++++|+++++.++|+++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~ 322 (554)
T 1yuw_A 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALR 322 (554)
T ss_dssp HHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccceeE
Q psy7262 734 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLG 813 (840)
Q Consensus 734 ~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~s~g 813 (840)
++++...+|+.|+||||+|++|+|++.|++.|++.++..+.||++|||+|||++|+.+++...+.++++++.|++|++||
T Consensus 323 ~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~slg 402 (554)
T 1yuw_A 323 DAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLG 402 (554)
T ss_dssp HTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSSCEE
T ss_pred HcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEeeeeEEE
Confidence 99999999999999999999999999999999778888899999999999999999999865667788999999999999
Q ss_pred EEeeCCeEEEccccCceEe
Q psy7262 814 IETAGGVSYSQSQLGWLLI 832 (840)
Q Consensus 814 i~~~~~~~~~~~~~~~~~~ 832 (840)
+++.+|.+..+++.+..++
T Consensus 403 i~~~~g~~~~li~r~t~iP 421 (554)
T 1yuw_A 403 IETAGGVMTVLIKRNTTIP 421 (554)
T ss_dssp EEETTTEEEEEECTTCBSS
T ss_pred EEecCceEEEEEECCCccC
Confidence 9999999988886654443
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-63 Score=592.15 Aligned_cols=425 Identities=31% Similarity=0.523 Sum_probs=379.3
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~~ 414 (840)
.++||| |||||+||++.+|.+++|+|+.|++++||+|+|.+++++||.+|..+...+|.++++++|++||+.+.+..++
T Consensus 3 ~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~ 82 (675)
T 3d2f_A 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFE 82 (675)
T ss_dssp CCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTHH
T ss_pred cEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCCcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHHH
Confidence 478999 9999999999999999999999999999999999889999999999999999999999999999999998888
Q ss_pred hhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCC
Q psy7262 415 ADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYF 493 (840)
Q Consensus 415 ~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~ 493 (840)
...+++||.+.. .++...+.+.+.|+...++|++|++++|++|++.|+.+++..+ .++|||||++|
T Consensus 83 ~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v-------------~~~VITVPa~f 149 (675)
T 3d2f_A 83 QESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANI-------------TDVCIAVPPWY 149 (675)
T ss_dssp HHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCC-------------CEEEEEECTTC
T ss_pred HHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCc-------------ceEEEEECCCC
Confidence 888999999875 4677778888888778999999999999999999999988755 79999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCcee
Q psy7262 494 NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNV 573 (840)
Q Consensus 494 ~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~ 573 (840)
++.||+++++|++.||++.+++++||+|||++|+..+..-......+.++||+|+||||+|+|++++.
T Consensus 150 ~~~qR~a~~~Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~------------ 217 (675)
T 3d2f_A 150 TEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFK------------ 217 (675)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEE------------
T ss_pred CHHHHHHHHHHHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEec------------
Confidence 99999999999999999999999999999999987652100001356788999999999998888653
Q ss_pred EEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHH
Q psy7262 574 LIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653 (840)
Q Consensus 574 ~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~ 653 (840)
++.+++++..++..+||.+||.+|++++.
T Consensus 218 ---------------------------------------------------~g~~~V~a~~gd~~lGG~d~D~~l~~~l~ 246 (675)
T 3d2f_A 218 ---------------------------------------------------KGQLKVLGTACDKHFGGRDFDLAITEHFA 246 (675)
T ss_dssp ---------------------------------------------------TTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------CCeEEEEEEcCCCCccHHHHHHHHHHHHH
Confidence 23456777888899999999999999999
Q ss_pred HHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHH
Q psy7262 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLR 733 (840)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~ 733 (840)
++|+++++.++..+++.+.+|+.+||++|+.||......+.++.+.++.++.+.|+|++|+++++|+++++..+|+++|+
T Consensus 247 ~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~i~~~L~ 326 (675)
T 3d2f_A 247 DEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALA 326 (675)
T ss_dssp HHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998988888889999999999999999999998888899988877888999999999999999999999999999999
Q ss_pred HcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccceeE
Q psy7262 734 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLG 813 (840)
Q Consensus 734 ~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~s~g 813 (840)
++++.+.+|+.|+||||+|++|+|++.|++.| +.++..+.||++|||+|||++|+.+++ .+.++++.+.|++|++||
T Consensus 327 ~a~l~~~~I~~VvLvGGssriP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAa~~a~~ls~--~~~v~~~~l~Dv~p~slg 403 (675)
T 3d2f_A 327 QAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICAIHSP--TLRVRPFKFEDIHPYSVS 403 (675)
T ss_dssp HHTCCGGGCCEEEEESGGGGSHHHHHHHHHHH-TSCEECCSCTTTHHHHHHHHHHHHTCS--SCCCCCCEEEEEECSCEE
T ss_pred HhCCChhhCcEEEEECCCccChHHHHHHHHhc-CCCccccCCcchHHHHHHHHHHHHhCC--CCcccceEEEeeeecceE
Confidence 99999999999999999999999999999999 677888899999999999999999998 567889999999999999
Q ss_pred EEeeCCe----EEEcccc------CceEeeeccCCC
Q psy7262 814 IETAGGV----SYSQSQL------GWLLIFYVCNPF 839 (840)
Q Consensus 814 i~~~~~~----~~~~~~~------~~~~~~~~~~~~ 839 (840)
+++.++. +..+++. .+..+|+..++|
T Consensus 404 i~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~ 439 (675)
T 3d2f_A 404 YSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDF 439 (675)
T ss_dssp EEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCE
T ss_pred eeecCCCCCcceEEEEcCCCCCCcccceeeeecCCc
Confidence 9999874 6666644 444556555543
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-62 Score=576.64 Aligned_cols=414 Identities=49% Similarity=0.765 Sum_probs=371.1
Q ss_pred CCCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEee-CCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChH
Q psy7262 335 IPSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412 (840)
Q Consensus 335 ~~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~-~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~ 412 (840)
..++||| |||||+||++++|.+++++|..|++++||+|+|. ++.+++|..|..+...+|.++++++|+|||+.+.++.
T Consensus 2 ~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 81 (605)
T 4b9q_A 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHH
T ss_pred CcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHH
Confidence 3578999 9999999999999999999999999999999998 5589999999999999999999999999999999999
Q ss_pred HHhhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCC
Q psy7262 413 VQADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPA 491 (840)
Q Consensus 413 ~~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa 491 (840)
++...+.+||.+.. .++...+.+ . +..++|+++++++|++|++.++.+++... .++|||||+
T Consensus 82 v~~~~~~~p~~~~~~~~g~~~~~~--~--~~~~~p~ei~a~iL~~lk~~ae~~lg~~v-------------~~~VITVPa 144 (605)
T 4b9q_A 82 VQRDVSIMPFKIIAADNGDAWVEV--K--GQKMAPPQISAEVLKKMKKTAEDYLGEPV-------------TEAVITVPA 144 (605)
T ss_dssp HHHHHTTCSSEEEECTTSBEEEEE--T--TEEECHHHHHHHHHHHHHHHHHHHHTSCC-------------CEEEEEECT
T ss_pred HHHHhhcCCeEEEEcCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCC-------------CeEEEEECC
Confidence 99999999999875 444444433 3 47899999999999999999999998865 899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCc
Q psy7262 492 YFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGER 571 (840)
Q Consensus 492 ~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~ 571 (840)
+|++.||+++++|++.|||+.+++++||+|||++|+.... ..+.++||+|+||||+|+|++++....
T Consensus 145 ~f~~~qr~a~~~Aa~~AGl~v~~li~EP~AAAlaygl~~~------~~~~~vlV~DlGGGT~Dvsi~~~~~~~------- 211 (605)
T 4b9q_A 145 YFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG------TGNRTIAVYDLGGGAFDISIIEIDEVD------- 211 (605)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHTTSC------CSSEEEEEEEECSSCEEEEEEEEEESS-------
T ss_pred CCCHHHHHHHHHHHHHcCCceEEEeCcHHHHHHHhhhhcc------CCCCEEEEEECCCCeEEEEEEEEecCC-------
Confidence 9999999999999999999999999999999999987653 146789999999999999999864310
Q ss_pred eeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHH
Q psy7262 572 NVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH 651 (840)
Q Consensus 572 ~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~ 651 (840)
..+.+++++..++..+||.+||.+|+++
T Consensus 212 ----------------------------------------------------~~~~~evla~~gd~~lGG~d~D~~l~~~ 239 (605)
T 4b9q_A 212 ----------------------------------------------------GEKTFEVLATNGDTHLGGEDFDSRLINY 239 (605)
T ss_dssp ----------------------------------------------------SCEEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred ----------------------------------------------------CCceEEEEEecCCCCcChHHHHHHHHHH
Confidence 0135678888999999999999999999
Q ss_pred HHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccC----CeeeEEEEehHHHHHHHHHHHHHHHHH
Q psy7262 652 FVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE----GVDFYTSITRARFEELNADLFRGTMEP 727 (840)
Q Consensus 652 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~e~e~~~~~~i~~i~~~ 727 (840)
+.++|+.+++.+...+++.+.+|+.+||++|+.||......+.++.+.. +.++.+.|+|++|+++++|+++++..+
T Consensus 240 l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~ 319 (605)
T 4b9q_A 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEP 319 (605)
T ss_dssp HHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 9999999998888889999999999999999999999998888776543 257889999999999999999999999
Q ss_pred HHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEe
Q psy7262 728 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDV 807 (840)
Q Consensus 728 i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~ 807 (840)
|+++|+++++...+|+.|+||||+|++|+|++.|++.| +.++....||++|||+|||++|+.+++. .+++++.|+
T Consensus 320 v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAai~a~~l~~~----~~~~~l~dv 394 (605)
T 4b9q_A 320 LKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDV 394 (605)
T ss_dssp HHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHH-TSCCCSSSCTTTHHHHHHHHHHHHHHTS----SCSEEEECB
T ss_pred HHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHh-ccCcCCCcChhHHHHHhHHHHHHHhcCC----CCceEEEee
Confidence 99999999999999999999999999999999999999 6778888999999999999999999983 568999999
Q ss_pred ccceeEEEeeCCeEEEccccCceEeeec
Q psy7262 808 TPLSLGIETAGGVSYSQSQLGWLLIFYV 835 (840)
Q Consensus 808 ~~~s~gi~~~~~~~~~~~~~~~~~~~~~ 835 (840)
+|++||+++.+|.+..+++.+..++..+
T Consensus 395 ~p~slgie~~~g~~~~ii~rnt~iP~~~ 422 (605)
T 4b9q_A 395 TPLSLGIETMGGVMTTLIAKNTTIPTKH 422 (605)
T ss_dssp CSSCEEEEETTTEEEEEECTTCBSSEEE
T ss_pred eeeEEEEEEcCCEEEEEEeCCCcCCcce
Confidence 9999999999999988886655544433
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-61 Score=568.20 Aligned_cols=411 Identities=50% Similarity=0.796 Sum_probs=363.3
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEee-CCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~-~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
.++||| |||||+||++.+|.+++|+|+.|++++||+|+|+ ++++++|.+|..+...+|.++++++|+++|+.+.++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~v 82 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (605)
T ss_dssp -CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTTH
T ss_pred CEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHHH
Confidence 478999 9999999999999999999999999999999996 56899999999999999999999999999999988777
Q ss_pred HhhcccCCeeEe-ecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 414 QADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 414 ~~~~~~~p~~~~-~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
+...+.+||.+. ..++...+.+ .| ..++|+++++++|++|++.|+.+++... .++|||||++
T Consensus 83 ~~~~~~~p~~~~~~~~g~~~i~~--~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~v-------------~~~VitVPa~ 145 (605)
T 2kho_A 83 QRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDYLGEPV-------------TEAVITVPAY 145 (605)
T ss_dssp HHHHHHCSSCEEECTTSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHHHCSCC-------------CEEEEEECTT
T ss_pred HHHhhcCCeEEEECCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCC-------------cEEEEEECCC
Confidence 777778899876 3555555554 43 6899999999999999999999988755 7999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
|++.||+++++|++.||++.+++++||+|||++|+.... ..+.++||+|+||||+|+|++++....
T Consensus 146 f~d~qr~a~~~A~~~AGl~v~~li~EP~AAAlay~l~~~------~~~~~vlV~DlGGGT~Dvsi~~~~~~~-------- 211 (605)
T 2kho_A 146 FNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG------TGNRTIAVYDLGGGTFDISIIEIDEVD-------- 211 (605)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTTTSS------SSEEEEEEEEECSSCEEEEEEEEECTT--------
T ss_pred CCHHHHHHHHHHHHHcCCceEEEecCHHHHHHHhhhccc------CCCCEEEEEECCCCeEEEEEEEEEecC--------
Confidence 999999999999999999999999999999999986542 146789999999999999998764200
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
.++.+++++..++..+||.+||.+|++++
T Consensus 212 ---------------------------------------------------~~g~~~v~a~~gd~~lGG~d~D~~l~~~l 240 (605)
T 2kho_A 212 ---------------------------------------------------GEKTFEVLATNGDTHLGGEDFDSRLINYL 240 (605)
T ss_dssp ---------------------------------------------------TSCEEEEEEEEEESSCSGGGTHHHHHHHH
T ss_pred ---------------------------------------------------CCCeEEEEEECCCCCccHHHHHHHHHHHH
Confidence 02356778888889999999999999999
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccC---C-eeeEEEEehHHHHHHHHHHHHHHHHHH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE---G-VDFYTSITRARFEELNADLFRGTMEPV 728 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~e~e~~~~~~i~~i~~~i 728 (840)
.++++++++.++..+++.+.+|+.+||++|+.||......+.++.+.+ | .++.+.|+|++|+++++|+++++.++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i 320 (605)
T 2kho_A 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPL 320 (605)
T ss_dssp HHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888999999999999999999999888888876543 2 467789999999999999999999999
Q ss_pred HHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEec
Q psy7262 729 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 808 (840)
Q Consensus 729 ~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~ 808 (840)
+++|+++++...+|+.|+||||+|++|+|++.|++.| +.++....||++|||+|||++|+.+++. ++++++.|++
T Consensus 321 ~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f-g~~~~~~~npd~aVA~GAa~~a~~l~~~----~~~~~l~dv~ 395 (605)
T 2kho_A 321 KVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVT 395 (605)
T ss_dssp HHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHHTTTTTS----CCCCCCSBCC
T ss_pred HHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhc-CCCcCcCCCcchHHHHHHHHHHHHhcCC----ccCceEEeee
Confidence 9999999999899999999999999999999999999 6678888999999999999999998873 5678899999
Q ss_pred cceeEEEeeCCeEEEccccCceEee
Q psy7262 809 PLSLGIETAGGVSYSQSQLGWLLIF 833 (840)
Q Consensus 809 ~~s~gi~~~~~~~~~~~~~~~~~~~ 833 (840)
|++||+++.+|.+..+++.+..++.
T Consensus 396 p~slgi~~~~g~~~~li~r~t~iP~ 420 (605)
T 2kho_A 396 PLSLGIETMGGVMTTLIAKNTTIPT 420 (605)
T ss_dssp CCCEEEEETTTEEEEEECTTBCSSE
T ss_pred eeeccccccCCceEEEEecccccCc
Confidence 9999999999999888866544443
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-57 Score=513.33 Aligned_cols=380 Identities=87% Similarity=1.246 Sum_probs=351.4
Q ss_pred CCCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 335 IPSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 335 ~~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
..++||| |||||+||++.+|.+++++++.|++++||+|+|.++.+++|.+|..+...+|.++++++|+++|+.+.+..+
T Consensus 23 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~~~ 102 (404)
T 3i33_A 23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATV 102 (404)
T ss_dssp CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSSCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSHHH
T ss_pred CCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCCCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcHHH
Confidence 3478999 999999999999999999999999999999999988999999999999999999999999999999999998
Q ss_pred HhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCC
Q psy7262 414 QADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYF 493 (840)
Q Consensus 414 ~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~ 493 (840)
+...+.+||.+...++...+.+.+.++...++|+++++++|++|++.++.+++... .++|||||++|
T Consensus 103 ~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~-------------~~~vitvPa~~ 169 (404)
T 3i33_A 103 QSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKV-------------HSAVITVPAYF 169 (404)
T ss_dssp HHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCC-------------CEEEEEECTTC
T ss_pred HHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCC-------------CcEEEEECCCC
Confidence 88889999999988999999999998889999999999999999999999988765 79999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCcee
Q psy7262 494 NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNV 573 (840)
Q Consensus 494 ~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~ 573 (840)
++.||++|++|++.|||+.+.+++||+|||++|....... ...+..+||||+||||+|++++++.+
T Consensus 170 ~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~---~~~~~~vlV~D~GgGT~dvsv~~~~~----------- 235 (404)
T 3i33_A 170 NDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGC---AGGEKNVLIFDLGGGTFDVSILTIED----------- 235 (404)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEEEHHHHHHHHTTTTSSCS---SSSCCEEEEEEECSSCEEEEEEEEET-----------
T ss_pred CHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHhhcccc---cCCCceEEEEECCCCcEEEEEEEEeC-----------
Confidence 9999999999999999999999999999999997765321 22567899999999999999887542
Q ss_pred EEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHH
Q psy7262 574 LIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 653 (840)
Q Consensus 574 ~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~ 653 (840)
+.+++++..++..+||.+||+.|.+++.
T Consensus 236 ----------------------------------------------------~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 263 (404)
T 3i33_A 236 ----------------------------------------------------GIFEVKSTAGDTHLGGEDFDNRMVSHLA 263 (404)
T ss_dssp ----------------------------------------------------TEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------CeEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2456677777789999999999999999
Q ss_pred HHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHH
Q psy7262 654 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLR 733 (840)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~ 733 (840)
++++++++.+...+++.+.+|+..||++|+.|+......+.++.+.++.++.+.|+|++|++++++.++++.+.|.++|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l~ 343 (404)
T 3i33_A 264 EEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALR 343 (404)
T ss_dssp HHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888889999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred HcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 734 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 734 ~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
+++....+|+.|+||||+|++|+|++.|++.|++.++..+.||++|||+|||++|+.+++
T Consensus 344 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 344 DAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 999998999999999999999999999999998888989999999999999999999886
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-57 Score=521.62 Aligned_cols=383 Identities=52% Similarity=0.816 Sum_probs=340.4
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~~ 414 (840)
.++||| |||+|+||++.+|.+++++|+.|++++||+|+|.++.+++|.+|..+...+| ++++++|+++|+++
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~------ 75 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNP-NTIISIKRHMGTDY------ 75 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCC------
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCc------
Confidence 578999 9999999999999999999999999999999998788999999999988999 99999999999743
Q ss_pred hhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCC
Q psy7262 415 ADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFN 494 (840)
Q Consensus 415 ~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~ 494 (840)
. +...| ..++|+++++++|++|++.++.+++... ..+|||||++|+
T Consensus 76 --------~-----------~~~~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~~-------------~~~VitvPa~~~ 121 (509)
T 2v7y_A 76 --------K-----------VEIEG--KQYTPQEISAIILQYLKSYAEDYLGEPV-------------TRAVITVPAYFN 121 (509)
T ss_dssp --------C-----------EEETT--EEECHHHHHHHHHHHHHHHHHHHHTSCC-------------CEEEEEECTTCC
T ss_pred --------E-----------EEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCC-------------CeEEEEECCCCC
Confidence 1 11222 4788999999999999999999888755 799999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeE
Q psy7262 495 DSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVL 574 (840)
Q Consensus 495 ~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~ 574 (840)
+.||++|++|++.||++.+.+++||+|||++|+.... .+.++||+|+||||+|+|++++.+
T Consensus 122 ~~qr~a~~~a~~~AGl~~~~li~Ep~AAAlay~~~~~-------~~~~vlV~D~GgGT~Dvsv~~~~~------------ 182 (509)
T 2v7y_A 122 DAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKE-------EDQTILVYDLGGGTFDVSILELGD------------ 182 (509)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTGGGS-------CSEEEEEEEECSSCEEEEEEEEET------------
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHhhccC-------CCCEEEEEECCCCeEEEEEEEEcC------------
Confidence 9999999999999999999999999999999987642 567899999999999999886532
Q ss_pred EEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHH
Q psy7262 575 IFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 654 (840)
Q Consensus 575 ~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~ 654 (840)
+.+++++..++..+||.+||..|++++.+
T Consensus 183 ---------------------------------------------------g~~~v~a~~g~~~lGG~d~d~~l~~~l~~ 211 (509)
T 2v7y_A 183 ---------------------------------------------------GVFEVKATAGDNHLGGDDFDQVIIDYLVN 211 (509)
T ss_dssp ---------------------------------------------------TEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------CeEEEEEecCCCCcCHHHHHHHHHHHHHH
Confidence 34566777788899999999999999999
Q ss_pred HHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccC---C-eeeEEEEehHHHHHHHHHHHHHHHHHHHH
Q psy7262 655 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE---G-VDFYTSITRARFEELNADLFRGTMEPVEK 730 (840)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~e~e~~~~~~i~~i~~~i~~ 730 (840)
+++++++.++..+++.+.+|+.+||++|+.|+......+.++.+.+ | .++.+.|+|++|+++++|+++++.++|.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 291 (509)
T 2v7y_A 212 QFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQ 291 (509)
T ss_dssp HHHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888899999999999999999999888888875543 2 45778999999999999999999999999
Q ss_pred HHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcCCCCccccceEEEEeccc
Q psy7262 731 SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPL 810 (840)
Q Consensus 731 ~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~d~~~~ 810 (840)
+|+++++...+|+.|+||||+|++|+|++.|++.| +.++..+.||++|||+|||++|+.+++. +++++++|++|+
T Consensus 292 ~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f-~~~~~~~~~p~~aVa~Gaa~~a~~l~~~----~~~~~~~dv~p~ 366 (509)
T 2v7y_A 292 ALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPL 366 (509)
T ss_dssp HHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHH-SSCCBCCSCTTTHHHHHHHHHHHHHHTC----CCCCCCCCBCSS
T ss_pred HHHHcCCChhHCcEEEEECCcccChHHHHHHHHHh-CCCcCcCCCchhhhHhhHHHHHHHhcCC----ccCceEEEeecc
Confidence 99999998889999999999999999999999999 6678888999999999999999999874 467889999999
Q ss_pred eeEEEeeCCeEEEccccCceEeee
Q psy7262 811 SLGIETAGGVSYSQSQLGWLLIFY 834 (840)
Q Consensus 811 s~gi~~~~~~~~~~~~~~~~~~~~ 834 (840)
+||+++.+|.+..+++.+..++..
T Consensus 367 slgi~~~~~~~~~li~~~~~iP~~ 390 (509)
T 2v7y_A 367 SLGIETMGGVFTKLIERNTTIPTS 390 (509)
T ss_dssp EEEEEETTTEEEEEECTTCBSSEE
T ss_pred ccceeecCCceEEEEeCCCcCCcc
Confidence 999999999998888665544433
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-55 Score=498.30 Aligned_cols=376 Identities=30% Similarity=0.525 Sum_probs=332.3
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~~ 414 (840)
.++||| |||+++||++.+|.+++++|+.|++++||+|+|.++++++|.+|..+...+|.+++.++|+++|+++.+...+
T Consensus 14 ~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~~~ 93 (409)
T 4gni_A 14 VVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPT 93 (409)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEETTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCCCG
T ss_pred cEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECCCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchhhh
Confidence 478999 9999999999999999999999999999999999999999999999999999999999999999987665443
Q ss_pred hhcccCCeeEeecCCcceEEEEEc----CcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeC
Q psy7262 415 ADMKHWPFEVVSDGGKPKIKVEYK----GEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVP 490 (840)
Q Consensus 415 ~~~~~~p~~~~~~~~~~~~~v~~~----~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVP 490 (840)
.. ..++.....++...+.+... +....++|+++++++|++|+++++..++... .++|||||
T Consensus 94 ~~--~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~-------------~~~vitvP 158 (409)
T 4gni_A 94 HN--HASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKV-------------TSAVITIP 158 (409)
T ss_dssp GG--TTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCC-------------CEEEEEEC
T ss_pred hh--ccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCC-------------CeEEEEEC
Confidence 32 33444456677777776654 3568999999999999999999999988755 79999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCC
Q psy7262 491 AYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGE 570 (840)
Q Consensus 491 a~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~ 570 (840)
++|++.||++|++|++.|||+.+.+++||+|||++|..... ....+.++||||+||||+|+|++++.+
T Consensus 159 a~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~----~~~~~~~vlv~D~GgGT~dvsv~~~~~-------- 226 (409)
T 4gni_A 159 TNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAYDARPE----ATISDKIIVVADLGGSRSDVTVLASRS-------- 226 (409)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTC----------CCEEEEEEEECSSCEEEEEEEEET--------
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHHhcccc----cCCCCCEEEEEECCCCceEEEEEEEeC--------
Confidence 99999999999999999999999999999999999977541 223678899999999999999887542
Q ss_pred ceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHH
Q psy7262 571 RNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVN 650 (840)
Q Consensus 571 ~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~ 650 (840)
+.+++++..++..+||.+||..|++
T Consensus 227 -------------------------------------------------------~~~~v~~~~~~~~lGG~~~d~~i~~ 251 (409)
T 4gni_A 227 -------------------------------------------------------GMYTILATVHDYEYHGIALDKVLID 251 (409)
T ss_dssp -------------------------------------------------------TEEEEEEEEEESSSSHHHHHHHHHH
T ss_pred -------------------------------------------------------CeEEEEEecCCCCcCHHHHHHHHHH
Confidence 3456777777789999999999999
Q ss_pred HHHHHHHHhcc--CCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHH
Q psy7262 651 HFVQEFKRKYK--KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPV 728 (840)
Q Consensus 651 ~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i 728 (840)
++.+.+..+++ .+...+++.+.+|+.+||++|+.|+......+.++.+.++.++...|+|++|+++++|+++++.++|
T Consensus 252 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i 331 (409)
T 4gni_A 252 HFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLV 331 (409)
T ss_dssp HHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHH
Confidence 99999998887 7777888999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCC-cc------cCCCChhhHHHHHHHHHHHHHcC
Q psy7262 729 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-EL------NKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 729 ~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~-~v------~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
+++|+++++...+|+.|+||||+|++|+|++.|++.|+.. ++ ....||++|||+|||++|+....
T Consensus 332 ~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 332 ESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQE 403 (409)
T ss_dssp HHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhh
Confidence 9999999999899999999999999999999999999654 34 57789999999999999998764
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-53 Score=473.94 Aligned_cols=373 Identities=49% Similarity=0.796 Sum_probs=324.9
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEee-CCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~-~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
.++||| |||+++|+++.+|.++++.|+.|++++||+|+|+ ++.+++|.+|......+|.++++++|++||+.+.++.+
T Consensus 3 ~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 82 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (383)
T ss_dssp CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred cEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHHH
Confidence 478999 9999999999999999999999999999999997 46789999999999999999999999999999888877
Q ss_pred HhhcccCCeeEee-cCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 414 QADMKHWPFEVVS-DGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 414 ~~~~~~~p~~~~~-~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
+...+.+||.+.. .++...+.+ .+ ..++|+++++++|+++++.++.+++... .++|+|||++
T Consensus 83 ~~~~~~~p~~~~~~~~~~~~~~~--~g--~~~~~~~i~~~~L~~l~~~a~~~~~~~~-------------~~~vitvP~~ 145 (383)
T 1dkg_D 83 QRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDYLGEPV-------------TEAVITVPAY 145 (383)
T ss_dssp HHHTTTCSSEEEECSSSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHHHSSCC-------------CEEEECBCTT
T ss_pred HHHhhcCCeEEEEcCCCcEEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCC-------------CeEEEEECCC
Confidence 7777888998753 445444444 33 5899999999999999999998887654 7999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
|++.+|++|++|++.||++.+.+++||+|||++|+.... ..+.++||+|+||||+|+++++.+...
T Consensus 146 ~~~~~r~~~~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~------~~~~~~lVvD~Gggttdvsv~~~~~~~-------- 211 (383)
T 1dkg_D 146 FNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG------TGNRTIAVYDLGGGTFDISIIEIDEVD-------- 211 (383)
T ss_dssp CCHHHHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC-------CCEEEEEEEEECSSCEEEEEEEEEC----------
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHHHhccC------CCCcEEEEEEcCCCeEEEEEEEEEecC--------
Confidence 999999999999999999999999999999999976532 256789999999999999998764210
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
.++.+++++..++..+||.+||+.|.+++
T Consensus 212 ---------------------------------------------------~~~~~~v~~~~~~~~lGG~~id~~l~~~l 240 (383)
T 1dkg_D 212 ---------------------------------------------------GEKTFEVLATNGDTHLGGEDFDSRLINYL 240 (383)
T ss_dssp -----------------------------------------------------CCCEEEEEEEESSCSHHHHHHHHHHHH
T ss_pred ---------------------------------------------------CCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01234556666778999999999999999
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccC---C-eeeEEEEehHHHHHHHHHHHHHHHHHH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE---G-VDFYTSITRARFEELNADLFRGTMEPV 728 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~e~e~~~~~~i~~i~~~i 728 (840)
.+++..+++.++..+++.+.+|+..||++|+.|+......+.++.+.+ | .++.+.|+|++|+++++|.++++.+.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i 320 (383)
T 1dkg_D 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELL 320 (383)
T ss_dssp HHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHH
Confidence 999988888777778889999999999999999998888887765443 2 456789999999999999999999999
Q ss_pred HHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHH
Q psy7262 729 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 791 (840)
Q Consensus 729 ~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l 791 (840)
.++|+++++...+|+.|+|+||+|++|+|++.|++.| +.++..+.||++|||+|||++|+.+
T Consensus 321 ~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~l 382 (383)
T 1dkg_D 321 KVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVL 382 (383)
T ss_dssp HHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHTTTT
T ss_pred HHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHh-CCCCCCCcChHHHHHHHHHHHHHhh
Confidence 9999999988889999999999999999999999999 5678888999999999999999765
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=330.69 Aligned_cols=309 Identities=23% Similarity=0.329 Sum_probs=228.1
Q ss_pred CCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCC--c-EEEcHHHHHHHHhCcCchhhhhhHhcCCCCCCh
Q psy7262 336 PSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDT--E-RLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDA 411 (840)
Q Consensus 336 ~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~--~-~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~ 411 (840)
..+||| |||++++++..++ .++ .+||+|+|+++ . .++|++|.....++|.++...
T Consensus 4 ~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~------------ 62 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAI------------ 62 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEE------------
T ss_pred ceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEE------------
Confidence 468999 8888888765333 232 27999999854 3 479999988776666664321
Q ss_pred HHHhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCC
Q psy7262 412 TVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPA 491 (840)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa 491 (840)
.|+. ++ .+...+....++.++.+.+... ... ....+|||||+
T Consensus 63 --------~p~~----~g-------------~i~~~~~~~~i~~~~l~~~~~~--~~~-----------~~~~~vitvP~ 104 (344)
T 1jce_A 63 --------RPMR----DG-------------VIADYTVALVMLRYFINKAKGG--MNL-----------FKPRVVIGVPI 104 (344)
T ss_dssp --------CCEE----TT-------------EESSHHHHHHHHHHHHHHHHTS--CCS-----------CCCEEEEEECT
T ss_pred --------ecCC----CC-------------eeCChHHHHHHHHHHHHHHhhc--ccc-----------CCCeEEEEECC
Confidence 1221 00 1111233344444444433221 001 01689999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCc
Q psy7262 492 YFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGER 571 (840)
Q Consensus 492 ~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~ 571 (840)
+|++.||+++++|++.||++.+.+++||+|||++|+.... .+.+++|+|+||||||+++++.+.
T Consensus 105 ~~~~~~r~~~~~a~~~aG~~~~~li~ep~Aaa~~~~~~~~-------~~~~~lVvDiGggttdvsv~~~~~--------- 168 (344)
T 1jce_A 105 GITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVE-------EPSGNMVVDIGGGTTEVAVISLGS--------- 168 (344)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHTTCCTT-------SSSCEEEEEECSSCEEEEEEETTE---------
T ss_pred CCCHHHHHHHHHHHHHcCCCeEeccCCHHHHHHhcCCCCC-------CCceEEEEEeCCCeEEEEEEEcCC---------
Confidence 9999999999999999999999999999999999975432 467899999999999999986531
Q ss_pred eeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHH
Q psy7262 572 NVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH 651 (840)
Q Consensus 572 ~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~ 651 (840)
+ + ..++..+||.+||+.|.++
T Consensus 169 ----------------------------------~-~------------------------~~~~~~lGG~~id~~l~~~ 189 (344)
T 1jce_A 169 ----------------------------------I-V------------------------TWESIRIAGDEMDEAIVQY 189 (344)
T ss_dssp ----------------------------------E-E------------------------EEEEESCSHHHHHHHHHHH
T ss_pred ----------------------------------E-E------------------------eeCCCCccChhHHHHHHHH
Confidence 0 0 0123679999999999999
Q ss_pred HHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCe------eEEEEe--cccCCeeeEEEEehHHHHHHHHHHHHH
Q psy7262 652 FVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ------ASIEID--SLFEGVDFYTSITRARFEELNADLFRG 723 (840)
Q Consensus 652 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~--~~~~~~~~~~~itr~e~e~~~~~~i~~ 723 (840)
+.+++. .... ...||++|+.|+.... ..+.+. .+.++.+..+.|+|++|+++++|.+++
T Consensus 190 l~~~~~----~~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 256 (344)
T 1jce_A 190 VRETYR----VAIG---------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVA 256 (344)
T ss_dssp HHHHHC----EECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHH
T ss_pred HHHHhC----cccC---------HHHHHHHHHHHhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHH
Confidence 976543 2111 3578999999987542 244443 334566778999999999999999999
Q ss_pred HHHHHHHHHHHcCCC--ccCc-cEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHc
Q psy7262 724 TMEPVEKSLRDAKMD--KAQI-HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 792 (840)
Q Consensus 724 i~~~i~~~l~~a~~~--~~~I-d~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~ 792 (840)
+.+.|.++|++++.. .+.+ +.|+|+||+|++|.|++.|++.| +.++..+.||++|||+||+++|+.++
T Consensus 257 i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 257 IVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHH-CCCccccCChHHHHHHHHHHHHhChH
Confidence 999999999987532 2234 68999999999999999999999 56677788999999999999997544
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=300.64 Aligned_cols=197 Identities=42% Similarity=0.635 Sum_probs=187.4
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|++||||||+||++++++|+|..|+|+.+.|++||||+..+.+|..||+|.|.|+||+|+|.++|+|+|++|.||+|+|+
T Consensus 20 ~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G~~~IeVtf~iD~nGiL~V~ 99 (219)
T 4e81_A 20 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVS 99 (219)
T ss_dssp EEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCSCEEEEEEECTTCCEEEE
T ss_pred EEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCCCceEEEEEEeCCCCCEeee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.++.+|++..++|.+.. .||++||++|++++++++.+|++.+++.++||.||+|+|++|+.|++ +..++++++++.
T Consensus 100 a~d~~tg~~~~i~I~~~~-~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~--~~~~l~~~~k~~ 176 (219)
T 4e81_A 100 AKDKNSGKEQKITIKASS-GLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTA 176 (219)
T ss_dssp EEETTTCCEEEEEECTTC-SCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHH
T ss_pred eeccccCccceEeeeccc-cccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhCCHHHHHH
Confidence 999999999999998764 59999999999999999999999999999999999999999999974 778999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 203 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~ 203 (840)
+.+.++++++||+++ ++++|++++++|++++.||..|.++
T Consensus 177 i~~~l~~~~~~L~~~---~~~~i~~~~~~L~~~~~~i~~~~~~ 216 (219)
T 4e81_A 177 IESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 216 (219)
T ss_dssp HHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999766 5889999999999999999999887
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=287.27 Aligned_cols=198 Identities=30% Similarity=0.475 Sum_probs=187.6
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..|+|+.+.|+|||||+..+.+|..||+|.|.|+||+|+|.++|+|+|+||.||+|+|+
T Consensus 17 ~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~I~Vtf~iD~nGiL~V~ 96 (227)
T 1u00_A 17 VEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVT 96 (227)
T ss_dssp EEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSCEEEEEEECTTCCEEEE
T ss_pred EEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceEEEEEEEECCCCcEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.++.+|+...++|.... .|++++++++++++++++.+|++.+++.+++|.||+|+|++|++|.+ +..+++++++++
T Consensus 97 a~d~~tg~~~~i~i~~~~-~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~~--~~~~~~~~~k~~ 173 (227)
T 1u00_A 97 AMEKSTGVEASIQVKPSY-GLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAA--DAALLSAAERQV 173 (227)
T ss_dssp EEETTTCCEEEEEECCCS-CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHH
T ss_pred eecccccccceEEEEecc-CCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCHHHHHH
Confidence 999999999999998774 49999999999999999999999999999999999999999999974 678999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQG 204 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~ 204 (840)
+.++|+++++||++. ++++|++++++|++++.||..|++..
T Consensus 174 i~~~l~~~~~wl~~~---d~~~~~~~~~~L~~~~~~i~~r~~~~ 214 (227)
T 1u00_A 174 IDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQ 214 (227)
T ss_dssp HHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999743 48899999999999999999988753
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=289.28 Aligned_cols=197 Identities=42% Similarity=0.633 Sum_probs=186.8
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|++|||||++||++++++|+|..|+|+.+.|++||||+..+.+|..||+|.|.|+||+++|.++|+|+|++|.||+|+|+
T Consensus 408 ~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~ 487 (605)
T 4b9q_A 408 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVS 487 (605)
T ss_dssp EEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTTSCEEEE
T ss_pred EEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEEcCCcEEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.++.+|++..++|.... .|+++|+++|++++++++.+|++.+++.++||+||+|+|++|+.|+ ++..+++++++++
T Consensus 488 a~~~~tg~~~~i~i~~~~-~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~--~~~~~~~~~~~~~ 564 (605)
T 4b9q_A 488 AKDKNSGKEQKITIKASS-GLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVE--EAGDKLPADDKTA 564 (605)
T ss_dssp EEETTTCCEECCEEESCC-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHH
T ss_pred EEecCCCcEEEEEecCCC-CCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhCCHHHHHH
Confidence 999999999999998765 5999999999999999999999999999999999999999999997 4778999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 203 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~ 203 (840)
+.+.++++++||+.+ ++++|++++++|++.+.|+..++|+
T Consensus 565 ~~~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 565 IESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999865 3789999999999999999999875
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=245.78 Aligned_cols=144 Identities=56% Similarity=0.848 Sum_probs=139.3
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..|+|+.+.|++||||+..+.+|..||+|.|.|+||+|+|.++|+|+|++|.||+|+|+
T Consensus 39 ~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~p~G~~~IeVtf~iD~nGiL~Vs 118 (182)
T 3n8e_A 39 FTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVS 118 (182)
T ss_dssp EEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCSCEEEEEEECTTCCEEEE
T ss_pred EEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCCCCCCeeEEEEEEEecCCEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhcc
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 145 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~ 145 (840)
+.++.+|++..++|... +.|+++||++|++++++++.+|++.+++.++||.||+|+|.+|++|+
T Consensus 119 A~d~~tg~~~~i~I~~~-~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy~~~~~l~ 182 (182)
T 3n8e_A 119 AKDKGTGREQQIVIQSS-GGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182 (182)
T ss_dssp EEETTTCCEEEEEESCC-CCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHCCSCCCC
T ss_pred EEEcCCCCEeeEEEecC-ccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999887 77999999999999999999999999999999999999999998763
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-28 Score=283.32 Aligned_cols=197 Identities=42% Similarity=0.635 Sum_probs=187.4
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|++|||||++||++++.+|+|..|+|+.+.|++||||+..+.+|..||+|.|.|+||+++|.++|+|+|++|.||+|+|+
T Consensus 408 ~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~ 487 (605)
T 2kho_A 408 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVS 487 (605)
T ss_dssp EEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEECTTSCEEEE
T ss_pred eEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEcCCCceeEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHH
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~ 160 (840)
+.++.+++...++|... +.|+++|+++|++++++++.+|++.+++.+++|+||+|+|++|++|++ +..+++++++++
T Consensus 488 a~~~~tg~~~~i~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~--~~~~~~~~~~~~ 564 (605)
T 2kho_A 488 AKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTA 564 (605)
T ss_dssp EEETTTCCEEEEEECTT-SSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHH
T ss_pred EEEcCCCceeecccccc-cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCHHHHHH
Confidence 99999999999999877 669999999999999999999999999999999999999999999974 788999999999
Q ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7262 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 203 (840)
Q Consensus 161 l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~ 203 (840)
+.+.++++++||+++ ++++|++++++|++++.||..|+++
T Consensus 565 i~~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 565 IESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHHHHHTTSS---CHHHHHHHHHHHHTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999843 6899999999999999999999875
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=276.21 Aligned_cols=224 Identities=17% Similarity=0.270 Sum_probs=183.4
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCcc-CCccceeEEEcCCCCCCCCCC-eEEEEEEecCCccEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTK-DNNLLGKFELTSIPPAPRGVP-QIEVTFDIDANGILN 78 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~-~n~~ig~~~i~gi~~~~~G~~-~I~vtf~ld~nGil~ 78 (840)
|.+|||||++||++++++|+|..++ .+.+. |+|++..+. +|..||+|.|.||||+++|.+ +|+|+|++|.||+|+
T Consensus 415 ~~~li~rnt~iP~~k~~~f~~~~~~--~~~~~-~~ge~~~~~~~n~~lg~f~l~gi~~~~~g~~~~i~v~f~id~~Gil~ 491 (675)
T 3d2f_A 415 HMEVFPAGSSFPSTKLITLNRTGDF--SMAAS-YTDITQLPPNTPEQIANWEITGVQLPEGQDSVPVKLKLRCDPSGLHT 491 (675)
T ss_dssp EEEEECTTEEESEEEEEEEEESSCE--EEEEE-ESCGGGSCTTCCSEEEEEEEECCCCCSSCSCEEEEEEEEECTTSCEE
T ss_pred eEEEEcCCCCCCcccceeeeecCCc--eEEEE-EcCCcccccccCceeeEEEecCcCCCCCCCcceEEEEEEEcCCCcEE
Confidence 4689999999999999999887654 34444 789988776 999999999999999999975 999999999999999
Q ss_pred EEEE----------eeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchh
Q psy7262 79 VTAI----------EKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEK 148 (840)
Q Consensus 79 V~a~----------~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~ 148 (840)
|++. ++.++++..++|.....+||++|+++|++++++++.+|++.+++.+++|+||+|+|++|++|++ +
T Consensus 492 V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~-~ 570 (675)
T 3d2f_A 492 IEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEE-E 570 (675)
T ss_dssp EEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-T
T ss_pred EEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 9995 6778888889998876679999999999999999999999999999999999999999999975 5
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHH-hhCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcceeeeccccccc
Q psy7262 149 LKDKISDAERTQILDKCNDVIKWL-DANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPVQPFTTTQVLCSKLFTFH 227 (840)
Q Consensus 149 ~~~~~~~~e~~~l~~~l~e~~~WL-d~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (840)
+..++++++++++.+.|+++++|| ++++++++++|++|+++|++++.||..|+++.. ..+..+-.|.
T Consensus 571 ~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~~~~i~~r~~e~~------------~rp~~~~~~~ 638 (675)
T 3d2f_A 571 YAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKE------------EEKKQAIRSK 638 (675)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHC--
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh------------cChHHHHHHH
Confidence 889999999999999999999999 456678899999999999999999999988731 1222223344
Q ss_pred cccCCcccccccc
Q psy7262 228 QFYPKSSCFLHNF 240 (840)
Q Consensus 228 ~~~~~~~~~~~~~ 240 (840)
+.+.+...++..+
T Consensus 639 ~~~~~~~~~~~~~ 651 (675)
T 3d2f_A 639 QEASQMAAMAEKL 651 (675)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 4555666555554
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=223.27 Aligned_cols=134 Identities=69% Similarity=1.053 Sum_probs=130.2
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..|+|+.+.|++||||+..+.+|..||+|.|.|+||+|+|.++|+|+|++|.||+|+|+
T Consensus 19 ~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~~I~Vtf~iD~nGiL~V~ 98 (152)
T 3h0x_A 19 MTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVPQIEVTFALDANGILKVS 98 (152)
T ss_dssp EEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCSCEEEEEEECTTSEEEEE
T ss_pred EEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCceEEEEEEEcCCCEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 134 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE 134 (840)
+.++.+|++..++|.+..+.|+++|+++|++++++|+.+|++.+++.++||.||
T Consensus 99 a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 99 ATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152 (152)
T ss_dssp EEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCCC
T ss_pred EEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 999999999999999887789999999999999999999999999999999886
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-27 Score=223.80 Aligned_cols=134 Identities=68% Similarity=1.063 Sum_probs=126.7
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..|+|+.+.|++||||+..+.+|..||+|.|.|+||+|+|.++|+|+|++|.||+|+|+
T Consensus 19 ~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~~IeVtf~iD~nGiL~Vs 98 (152)
T 3dob_A 19 MTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVS 98 (152)
T ss_dssp EEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCCCEEEEEEECTTCCEEEE
T ss_pred EEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 134 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE 134 (840)
+.++.+|++..++|.+..+.|+++|+++|++++++++.+|++.+++.++||.||
T Consensus 99 a~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 99 AEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152 (152)
T ss_dssp EEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEEC
T ss_pred EEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 999999999999999887889999999999999999999999999999999886
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-26 Score=222.28 Aligned_cols=133 Identities=58% Similarity=0.899 Sum_probs=128.7
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..|+|+.+.|++||||+..+.+|..||+|.|.|+||+|+|.++|+|+|++|.||+|+|+
T Consensus 19 ~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~~IeVtf~iD~nGiL~Vs 98 (151)
T 3dqg_A 19 MTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVS 98 (151)
T ss_dssp EEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSEEEEE
T ss_pred EEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCcEEEEEEEeccCcEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 134 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE 134 (840)
+.++.+|++..++|.+. +.|+++|+++|++++++++.+|++.+++.++||.||
T Consensus 99 a~d~~tg~~~~i~I~~~-~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 99 ARDRGTGKEQQIVIQSS-GGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151 (151)
T ss_dssp EEETTTCCEEEEEEECS-SSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCCC
T ss_pred EEEccCCCEeEEEEecC-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 99999999999999987 779999999999999999999999999999999875
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=209.89 Aligned_cols=134 Identities=62% Similarity=0.960 Sum_probs=129.0
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++.+|+|..|+|..+.|++||||+..+.+|..||+|.|.|+||+++|.++|+|+|++|.||+|+|+
T Consensus 19 ~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~~I~V~f~id~nGiL~V~ 98 (152)
T 2op6_A 19 MTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVS 98 (152)
T ss_dssp EEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCSCEEEEEEECTTSCEEEE
T ss_pred EEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCceEEEEEEECCCcEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 134 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE 134 (840)
+.+..+++...++|....+.|+++|++++++++++|+.+|++.+++.++||.||
T Consensus 99 a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 99 AEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152 (152)
T ss_dssp EEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEEC
T ss_pred EEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhcC
Confidence 999999999999998876779999999999999999999999999999999886
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-23 Score=227.53 Aligned_cols=204 Identities=17% Similarity=0.161 Sum_probs=148.8
Q ss_pred ceEE--EeeCCCCCHHHHHHHHHHHHHc--------C------CcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEE
Q psy7262 483 SNAV--ITVPAYFNDSQRQATKDSGTIA--------G------LNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIF 546 (840)
Q Consensus 483 ~~vV--itVPa~~~~~~r~~l~~Aa~~A--------G------~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVv 546 (840)
.++| ++||++|++.||+++++++..+ | ++.+.+++||.|||++|. .... ....+.+++|+
T Consensus 120 ~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l-~~~~---~~~~~~~vlVv 195 (346)
T 2fsj_A 120 VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLL-NQGI---IEQQPGYGVVI 195 (346)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHH-HHTS---SCCCSSEEEEE
T ss_pred eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhh-cccc---ccccCCcEEEE
Confidence 5799 9999999999999999998776 4 467899999999999882 2211 11134678999
Q ss_pred ecCCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCC
Q psy7262 547 DLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDG 626 (840)
Q Consensus 547 DiGGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~ 626 (840)
||||||||+++++++++.
T Consensus 196 DIGgGTtDv~vi~~~~g~-------------------------------------------------------------- 213 (346)
T 2fsj_A 196 DVGSRTTDVLTINLMDME-------------------------------------------------------------- 213 (346)
T ss_dssp EECSSCEEEEEEETTTTE--------------------------------------------------------------
T ss_pred ECCCCcEEEEEEEecCCE--------------------------------------------------------------
Confidence 999999999999764321
Q ss_pred eEEEEEeeCCCCCchhhhhhHHHHHHHHHHHHhccC--CccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeee
Q psy7262 627 IFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK--DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDF 704 (840)
Q Consensus 627 ~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~--~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~ 704 (840)
.+.+..++..+||.++++.+++++.+++ +. .+. ...+| .. ..+.+ .+.
T Consensus 214 --~v~~~s~~~~lGg~~i~~~I~~~i~~~~----g~~~~i~---------~~~~e-------~~--~~~~~----~g~-- 263 (346)
T 2fsj_A 214 --PVVELSFSLQIGVGDAISALSRKIAKET----GFVVPFD---------LAQEA-------LS--HPVMF----RQK-- 263 (346)
T ss_dssp --ECGGGCEEESCCHHHHHHHHHHHHHHHH----CCCCCHH---------HHHHH-------TT--SCEEE----TTE--
T ss_pred --EEeecCCCcchhHHHHHHHHHHHHHHHh----CCCcCCC---------HHHHh-------cC--CeEeE----CCc--
Confidence 0001112357899999999988776544 32 111 01122 11 11222 222
Q ss_pred EEEEehHHH-HHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcc-cCCCChhhHHHH
Q psy7262 705 YTSITRARF-EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL-NKSINPDEAVAY 782 (840)
Q Consensus 705 ~~~itr~e~-e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v-~~~~~p~~aVA~ 782 (840)
.++++++ +++++++++++.+.|++.|+++ .+.++.|+|+||+|++ +++.|++.|+...+ ....||++|+|+
T Consensus 264 --~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~~i~~IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~ 336 (346)
T 2fsj_A 264 --QVGGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANAL 336 (346)
T ss_dssp --EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcccEEEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHH
Confidence 3569999 9999999999999999999876 4578999999999999 99999999964332 226799999999
Q ss_pred HHHHHHH
Q psy7262 783 GAAVQAA 789 (840)
Q Consensus 783 GAal~a~ 789 (840)
|+..++.
T Consensus 337 G~~~~~~ 343 (346)
T 2fsj_A 337 GYRDAAE 343 (346)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-23 Score=228.61 Aligned_cols=320 Identities=17% Similarity=0.178 Sum_probs=193.8
Q ss_pred CCCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 335 IPSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 335 ~~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
...+||| |||+.+++++++|++.+ +..|...+|+... ......++..+...+|+++++...
T Consensus 13 ~~~vgiDiGt~~i~~~~~~~~~~~i--~~~g~~~~ps~~~------------~~g~i~d~~~~~~~ik~~~~~~~~---- 74 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVSGNPPAL--KALASRPTPPGLL------------MEGMVAEPAALAQEIKELLLEART---- 74 (377)
T ss_dssp CCCEEEEECSSEEEEEEEETTTTEE--EEEEEEECCTTSE------------ETTEESCHHHHHHHHHHHHHHHTC----
T ss_pred CceEEEEeCCCeEEEEEEeCCceEE--EEEEeEECCCCcc------------cCCCcCCHHHHHHHHHHHHHHcCC----
Confidence 4578999 99999988887666444 2335555666321 111234566677777777764100
Q ss_pred HhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCC
Q psy7262 414 QADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYF 493 (840)
Q Consensus 414 ~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~ 493 (840)
..+.. .+.-.+.......... ..++++++-.. ++..++.+++.+. .++++.+|..=
T Consensus 75 --~~~~v---~~~i~~~~~~~~~~~~--~~v~~~el~~~----i~~ea~~~~~~~~-------------~~~vid~~~~~ 130 (377)
T 2ych_A 75 --RKRYV---VTALSNLAVILRPIQV--PKMPLKEMEEA----VRWEAERYIPFPI-------------DEVVLDFAPLT 130 (377)
T ss_dssp --CCCEE---EEEECGGGCEEEEEEE--ECCCHHHHHHH----HHHHHGGGCSSCC--------------CEEEEEEESS
T ss_pred --CcceE---EEEecCCcEEEEEEEC--CCCCHHHHHHH----HHHHHhhcCCCCh-------------hHceEEEEEeC
Confidence 01111 0111111111111111 35677776653 2335555665544 56666665210
Q ss_pred C------------------HHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEE
Q psy7262 494 N------------------DSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDV 555 (840)
Q Consensus 494 ~------------------~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDi 555 (840)
. ....+.+++|++.||++...++.||.|||+.|...... ..+..++|+|+||||||+
T Consensus 131 ~~~~~~~~~~~~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~-----~~~~~~~vvDiGggttdi 205 (377)
T 2ych_A 131 PLSEVQEGEQVQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAE-----EPDRVFLVLDIGAESTSL 205 (377)
T ss_dssp CGGGSCTTSEEEEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHT-----STTCEEEEEEECSSCEEE
T ss_pred CCCCCCCcceeEEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhccc-----ccCCeEEEEEECCCcEEE
Confidence 0 12348899999999999999999999999988643321 245679999999999999
Q ss_pred EEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeC
Q psy7262 556 SILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAG 635 (840)
Q Consensus 556 s~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~ 635 (840)
++++.+. +++ .+
T Consensus 206 ~i~~~g~--------------------------------------------~~~------------------------~~ 217 (377)
T 2ych_A 206 VLLRGDK--------------------------------------------PLA------------------------VR 217 (377)
T ss_dssp EEEETTE--------------------------------------------EEE------------------------EE
T ss_pred EEEECCE--------------------------------------------EEE------------------------EE
Confidence 9986321 000 12
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEEEEehHHHHH
Q psy7262 636 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEE 715 (840)
Q Consensus 636 ~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~ 715 (840)
...+||.+||+.+++.+ +.+ ...||++|+.++..............-......++++++++
T Consensus 218 ~~~~GG~~i~~~i~~~~--------~~~-----------~~~aE~~K~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~ 278 (377)
T 2ych_A 218 VLTLSGKDFTEAIARSF--------NLD-----------LLAAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYD 278 (377)
T ss_dssp EESCSHHHHHHHHHHHT--------TCC-----------HHHHHHHHHHTC-------------------------CHHH
T ss_pred eeechHHHHHHHHHHHh--------CCC-----------HHHHHHHHhhcccccccccccccccccccccccCCHHHHHH
Confidence 35799999999988732 211 35789999988754321111000000012345789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHc--CCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccC--------------------C
Q psy7262 716 LNADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK--------------------S 773 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~~l~~a--~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~--------------------~ 773 (840)
++++.++++.+.|++.|+.. +.....++.|+|+||+|++|.+++.+++.|+ .++.. .
T Consensus 279 ~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~-~~v~~~~P~~~v~~~~~~~~~~~l~~ 357 (377)
T 2ych_A 279 AIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG-VNLEPVNPWEAVAVDPKRFESEQLQE 357 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHT-SEEEECCGGGGSBCCTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhC-CCeEecCchhhcccCcccCCHHHHHh
Confidence 99999999999999999853 4555679999999999999999999999993 33221 1
Q ss_pred CChhhHHHHHHHHHHH
Q psy7262 774 INPDEAVAYGAAVQAA 789 (840)
Q Consensus 774 ~~p~~aVA~GAal~a~ 789 (840)
.+|..++|.|+|+++.
T Consensus 358 ~~p~~a~a~Glal~~~ 373 (377)
T 2ych_A 358 IGPEFAVALGLALRGV 373 (377)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCC
Confidence 2466789999998873
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-22 Score=223.56 Aligned_cols=226 Identities=17% Similarity=0.159 Sum_probs=159.9
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHH-hhcccccCCCCCCCCceEEEEecCCCceEEEEEee
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIA-YGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTI 560 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~-y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~ 560 (840)
..++||+|+.|+..+|++|.+++ +.+|++.+.++.||.||+++ |.. ...+. .+.+.||||+||||||++++..
T Consensus 108 ~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~-~~~~~----~~~~glVvDiG~gtt~v~~v~~ 182 (418)
T 1k8k_A 108 HYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTS-RQVGE----RTLTGTVIDSGDGVTHVIPVAE 182 (418)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGS-TTCCS----CCCCEEEEEESSSCEEEEEEET
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcc-cccCC----CCCeEEEEEcCCCceEEEEeEC
Confidence 68999999999999999999999 88999999999999999887 421 11110 1226799999999999998852
Q ss_pred ccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCc
Q psy7262 561 EDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 640 (840)
Q Consensus 561 ~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lG 640 (840)
+.. +. .......+|
T Consensus 183 G~~-~~-----------------------------------------------------------------~~~~~~~lG 196 (418)
T 1k8k_A 183 GYV-IG-----------------------------------------------------------------SCIKHIPIA 196 (418)
T ss_dssp TEE-CG-----------------------------------------------------------------GGCEEESCS
T ss_pred CEE-cc-----------------------------------------------------------------cceEEEeCc
Confidence 210 00 001125789
Q ss_pred hhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCC-----------------eeEEEEecccCCee
Q psy7262 641 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST-----------------QASIEIDSLFEGVD 703 (840)
Q Consensus 641 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------------~~~i~i~~~~~~~~ 703 (840)
|.++|+.|.++|..+. ..+... .-...+|.+|+.++... ...+.++....+.+
T Consensus 197 G~~lt~~l~~~l~~~~-----~~~~~~-----~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~ 266 (418)
T 1k8k_A 197 GRDITYFIQQLLRDRE-----VGIPPE-----QSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKE 266 (418)
T ss_dssp HHHHHHHHHHHHHTTC-----CCCCGG-----GHHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCE
T ss_pred HHHHHHHHHHHHHhcC-----CCCCCH-----HHHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECCCCCCCcc
Confidence 9999999999886432 111110 01235667777765321 13566665555556
Q ss_pred eEEEEehHHH---HHHHHHHH------HHHHHHHHHHHHHcC--CCccCccEEEEEcCCCCcHHHHHHHHhHcCC-----
Q psy7262 704 FYTSITRARF---EELNADLF------RGTMEPVEKSLRDAK--MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG----- 767 (840)
Q Consensus 704 ~~~~itr~e~---e~~~~~~i------~~i~~~i~~~l~~a~--~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~----- 767 (840)
..+.+++++| |.++.|.+ ..|.+.|.++|..+. +....++.|+|+||+|++|.++++|++.+..
T Consensus 267 ~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~ 346 (418)
T 1k8k_A 267 FSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDAR 346 (418)
T ss_dssp EEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHH
T ss_pred cEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccc
Confidence 6789999999 45555542 568899999998864 3345678899999999999999998875511
Q ss_pred ------------------CcccCCCChhhHHHHHHHHHHH
Q psy7262 768 ------------------KELNKSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 768 ------------------~~v~~~~~p~~aVA~GAal~a~ 789 (840)
.++..+.+|..++..||+++|.
T Consensus 347 ~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 386 (418)
T 1k8k_A 347 LKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 386 (418)
T ss_dssp HHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred cccccccccccCCCCceeEEEeCCCccccceeHhHHHHHc
Confidence 1234456788999999999985
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=206.49 Aligned_cols=202 Identities=20% Similarity=0.334 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhh
Q psy7262 448 EVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 527 (840)
Q Consensus 448 ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~ 527 (840)
+....+|+++++.++...+... ..+++++|+.|...+|+.++++++.+|++...++.||+|++++|.
T Consensus 71 ~~~~~~l~~~~~~~~~~~~~~~-------------~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~ 137 (272)
T 3h1q_A 71 IGAIQIVRELKAKVERLLGSEL-------------FQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALG 137 (272)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCC-------------CEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCcc-------------CeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHc
Confidence 6778889999888887766544 689999999999999999999999999999999999999999885
Q ss_pred cccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEE
Q psy7262 528 LDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVL 607 (840)
Q Consensus 528 ~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~ 607 (840)
.. ..+|+|+||||||+++++.+. +
T Consensus 138 ~~------------~~~viDiGggst~~~~~~~g~--------------------------------------------~ 161 (272)
T 3h1q_A 138 IN------------DGIVVDIGGGTTGIAVIEKGK--------------------------------------------I 161 (272)
T ss_dssp CS------------SEEEEEECSSCEEEEEEETTE--------------------------------------------E
T ss_pred CC------------CEEEEEECCCcEEEEEEECCE--------------------------------------------E
Confidence 32 359999999999999875221 0
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCC
Q psy7262 608 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS 687 (840)
Q Consensus 608 v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 687 (840)
. ......+||..+++.+.+++. . -...+|++|+.++
T Consensus 162 -----------------------~-~~~~~~~Gg~~~~~~l~~~l~--------~-----------~~~~ae~~k~~~~- 197 (272)
T 3h1q_A 162 -----------------------T-ATFDEPTGGTHLSLVLAGSYK--------I-----------PFEEAETIKKDFS- 197 (272)
T ss_dssp -----------------------E-EECCBSCCHHHHHHHHHHHHT--------C-----------CHHHHHHHHHSST-
T ss_pred -----------------------E-EEecCCCcHHHHHHHHHHHhC--------C-----------CHHHHHHHHHhcC-
Confidence 0 124478999999999988763 1 1246788888765
Q ss_pred CCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCC
Q psy7262 688 STQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 767 (840)
Q Consensus 688 ~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~ 767 (840)
+++++++++.+.++++.+.+.+.++..+ +++.|+|+||++++|.+++.+++.| +
T Consensus 198 ---------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l-~ 251 (272)
T 3h1q_A 198 ---------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFL-G 251 (272)
T ss_dssp ---------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHH-S
T ss_pred ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHh-C
Confidence 5889999999999999999999988754 4789999999999999999999999 7
Q ss_pred CcccCCCChhhHHHHHHHHHH
Q psy7262 768 KELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 768 ~~v~~~~~p~~aVA~GAal~a 788 (840)
.++..+.+|++++|.|||++|
T Consensus 252 ~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 252 KEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp SCCBCCSSGGGHHHHHHHTTC
T ss_pred CCccccCChHHHHHHHHHhcC
Confidence 788888999999999999764
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=215.46 Aligned_cols=199 Identities=15% Similarity=0.136 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeEE
Q psy7262 496 SQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLI 575 (840)
Q Consensus 496 ~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~ 575 (840)
...+.+.+|++.||++...++.||.|||++|..... ++.+++|+|+||||||+++++.+.
T Consensus 168 ~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~-------~~~gv~vvDiGggttdisi~~~g~------------- 227 (419)
T 4a2a_A 168 KVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPE-------KDRGVVVVNLGYNFTGLIAYKNGV------------- 227 (419)
T ss_dssp HHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHH-------HHHCEEEEEECSSSEEEEEEETTE-------------
T ss_pred HHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhcccc-------ccCCEEEEEECCCcEEEEEEECCE-------------
Confidence 345679999999999999999999999998854332 456799999999999999986321
Q ss_pred EecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHHH
Q psy7262 576 FDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 655 (840)
Q Consensus 576 ~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~ 655 (840)
+++ .....+||++||+.|++.+.
T Consensus 228 -------------------------------~~~------------------------~~~i~~GG~~it~dIa~~l~-- 250 (419)
T 4a2a_A 228 -------------------------------PIK------------------------ISYVPVGMKHVIKDVSAVLD-- 250 (419)
T ss_dssp -------------------------------EEE------------------------EEEESCCHHHHHHHHHHHHT--
T ss_pred -------------------------------EEE------------------------EEecccHHHHHHHHHHHHHC--
Confidence 111 12267999999999987652
Q ss_pred HHHhccCCccccHHHHHHHHHHHHHHHHHcCCC-----CeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHH
Q psy7262 656 FKRKYKKDLTTNKRALRRLRTACERAKRTLSSS-----TQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEK 730 (840)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~ 730 (840)
.....||++|+.++.. ....+.++.... .....+++++|.++++|.++++.+.|++
T Consensus 251 -----------------~~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~--~~~~~is~~~l~~ii~p~veei~~~V~~ 311 (419)
T 4a2a_A 251 -----------------TSFEESERLIITHGNAVYNDLKEEEIQYRGLDG--NTIKTTTAKKLSVIIHARLREIMSKSKK 311 (419)
T ss_dssp -----------------CCHHHHHHHHHHHCCSCCTTCCCCEEEEECTTS--CSEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCHHHHHHHHHHhccCcccCCCCceEEEeecCC--ccceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 1245889999988642 345677765543 3568999999999999999999999999
Q ss_pred HHHHcCC------CccCccEEEEEcCCCCcHHHHHHHHhHcCCCccc--C-----C----------CChhhHHHHHHHHH
Q psy7262 731 SLRDAKM------DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN--K-----S----------INPDEAVAYGAAVQ 787 (840)
Q Consensus 731 ~l~~a~~------~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~--~-----~----------~~p~~aVA~GAal~ 787 (840)
.|+.++. ....++.|+||||+|++|.|++.+++.| +.++. . | .+|..++|.|++++
T Consensus 312 ~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~-g~~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~ 390 (419)
T 4a2a_A 312 FFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVF-KSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFA 390 (419)
T ss_dssp HHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHH-TSCEEECCGGGSSSCCCBTCHHHHTCGGGHHHHHTTCC
T ss_pred HHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHH-CCCeEEEecCCCCchhccCcccccCCchHHHHHHHHHH
Confidence 9999987 3456899999999999999999999999 44332 2 2 48999999999998
Q ss_pred HHHH
Q psy7262 788 AAIL 791 (840)
Q Consensus 788 a~~l 791 (840)
+...
T Consensus 391 ~~~~ 394 (419)
T 4a2a_A 391 VSEN 394 (419)
T ss_dssp ----
T ss_pred Hhhc
Confidence 8543
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-21 Score=214.41 Aligned_cols=219 Identities=16% Similarity=0.207 Sum_probs=150.5
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeec
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
..+++|+|+.++..+|+++.+++ +.+|++.+.++.||.|||++++. .+.+|||+||||||++.+.-+
T Consensus 101 ~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~------------~~~lVvDiG~gtt~v~~v~~G 168 (375)
T 2fxu_A 101 HPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVTHNVPIYEG 168 (375)
T ss_dssp SCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC------------SSEEEEEECSSCEEEEEEETT
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCC------------CeEEEEEcCCCceEEeEeECC
Confidence 56999999999999999888765 78899999999999999998843 367999999999999876422
Q ss_pred cCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCch
Q psy7262 562 DGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 641 (840)
Q Consensus 562 ~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG 641 (840)
. +. ........+||
T Consensus 169 ~-~~-----------------------------------------------------------------~~~~~~~~~GG 182 (375)
T 2fxu_A 169 Y-AL-----------------------------------------------------------------PHAIMRLDLAG 182 (375)
T ss_dssp E-EC-----------------------------------------------------------------GGGCEEESCCH
T ss_pred E-Ee-----------------------------------------------------------------ccceEEeccCH
Confidence 1 00 00011257899
Q ss_pred hhhhhHHHHHHHHHHHHhccCCcc--ccHHHHHHHHHHH---------HHHHHHcCCCCeeEEEEecccCCeeeEEEEeh
Q psy7262 642 EDFDNRMVNHFVQEFKRKYKKDLT--TNKRALRRLRTAC---------ERAKRTLSSSTQASIEIDSLFEGVDFYTSITR 710 (840)
Q Consensus 642 ~~~d~~l~~~l~~~~~~~~~~~~~--~~~~~~~~L~~~~---------e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr 710 (840)
+++|+.|.++|..+ +..+. .......++...+ +..|..++......+.++ ++ ..+.|++
T Consensus 183 ~~lt~~l~~~l~~~-----~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lp---dg--~~i~i~~ 252 (375)
T 2fxu_A 183 RDLTDYLMKILTER-----GYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP---DG--QVITIGN 252 (375)
T ss_dssp HHHHHHHHHHHHHH-----TCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT---TS--CEEEEST
T ss_pred HHHHHHHHHHHHhc-----CCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECC---CC--CEEEECh
Confidence 99999999998754 11111 1111222222211 112222333333444443 22 2477888
Q ss_pred HHHH---HHHHHH-----HHHHHHHHHHHHHHcC--CCccCccEEEEEcCCCCcHHHHHHHHhHcC----C---CcccCC
Q psy7262 711 ARFE---ELNADL-----FRGTMEPVEKSLRDAK--MDKAQIHDIVLVGGSTRIPKVQKLLQDFFN----G---KELNKS 773 (840)
Q Consensus 711 ~e~e---~~~~~~-----i~~i~~~i~~~l~~a~--~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~----~---~~v~~~ 773 (840)
+.|. .++.|. ...+.++|.+.+.++. +....++.|+|+||+|++|.++++|++.+. . .++..+
T Consensus 253 erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~ 332 (375)
T 2fxu_A 253 ERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332 (375)
T ss_dssp HHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECC
T ss_pred hheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcC
Confidence 8773 345553 3568888888888653 223356889999999999999999998772 1 345567
Q ss_pred CChhhHHHHHHHHHHH
Q psy7262 774 INPDEAVAYGAAVQAA 789 (840)
Q Consensus 774 ~~p~~aVA~GAal~a~ 789 (840)
.+|..+++.||+++|.
T Consensus 333 ~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 333 PERKYSVWIGGSILAS 348 (375)
T ss_dssp TTTTSHHHHHHHHHHH
T ss_pred CCCCccEEcchHHhhC
Confidence 7999999999999997
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-21 Score=225.55 Aligned_cols=144 Identities=90% Similarity=1.251 Sum_probs=138.9
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||+++|++++++|+|..|+|+.+.|++||||+..+.+|..||+|.|.|+||+++|.++|+|+|++|.||+|+|+
T Consensus 410 ~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~ 489 (554)
T 1yuw_A 410 MTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVS 489 (554)
T ss_dssp EEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTTCCEEEE
T ss_pred EEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCcccccEEEEEEEEccCceEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhc
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTV 144 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l 144 (840)
+.++.+++...++|....+.|+++|++++++++++++.+|++.+++.++||+||+|+|++|++|
T Consensus 490 a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l 553 (554)
T 1yuw_A 490 AVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553 (554)
T ss_dssp EEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSCCCC
T ss_pred EEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988777899999999999999999999999999999999999999998876
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-19 Score=196.98 Aligned_cols=204 Identities=15% Similarity=0.198 Sum_probs=132.9
Q ss_pred ceEEEeeCCC-CCHH--HH--HHHHH--------H----HHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEE
Q psy7262 483 SNAVITVPAY-FNDS--QR--QATKD--------S----GTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLI 545 (840)
Q Consensus 483 ~~vVitVPa~-~~~~--~r--~~l~~--------A----a~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLV 545 (840)
..+|+++|+. |... |+ +++.+ + .+.+++..+.++.||.||+++|.... ..+..++|
T Consensus 96 ~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e~~aa~~~~~~~~-------~~~~~~~v 168 (320)
T 2zgy_A 96 VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQEL-------DELDSLLI 168 (320)
T ss_dssp EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEESSHHHHHHHHHHS-------CTTCEEEE
T ss_pred EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecCcHHHHHhhhccc-------cCCCCEEE
Confidence 4799999998 6531 11 22221 1 23456788999999999999886321 24678999
Q ss_pred EecCCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeC
Q psy7262 546 FDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIED 625 (840)
Q Consensus 546 vDiGGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~ 625 (840)
+||||||||+++++-+.
T Consensus 169 vDiGggttd~~v~~~g~--------------------------------------------------------------- 185 (320)
T 2zgy_A 169 IDLGGTTLDISQVMGKL--------------------------------------------------------------- 185 (320)
T ss_dssp EEECSSCEEEEEEEGGG---------------------------------------------------------------
T ss_pred EEcCCCeEEEEEEeCCe---------------------------------------------------------------
Confidence 99999999999986221
Q ss_pred CeEEEEEeeCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHH-HHHcCCCCeeEEEEecccCCeee
Q psy7262 626 GIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA-KRTLSSSTQASIEIDSLFEGVDF 704 (840)
Q Consensus 626 ~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~-K~~Ls~~~~~~i~i~~~~~~~~~ 704 (840)
..+.+..++..+||.++|+.+.+++.+. +.++ ... .+|++ |..- ... ......+
T Consensus 186 --~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~~i--~~~-------~ae~~lk~~~---~~~--~~~~~i~---- 240 (320)
T 2zgy_A 186 --SGISKIYGDSSLGVSLVTSAVKDALSLA-----RTKG--SSY-------LADDIIIHRK---DNN--YLKQRIN---- 240 (320)
T ss_dssp --CCEEEEEEECSCCTHHHHHHHHHHTTCC-----SBGG--GHH-------HHHHHHHTTT---CHH--HHHHHSS----
T ss_pred --eEEeeecCCccccHHHHHHHHHHHHHHc-----CCCC--CHH-------HHHHHHHHhh---hhh--cccceec----
Confidence 0112223447899999999999888531 1111 111 23333 3220 000 0000000
Q ss_pred EEEEehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCC--cccCCCChhhHHHH
Q psy7262 705 YTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK--ELNKSINPDEAVAY 782 (840)
Q Consensus 705 ~~~itr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~--~v~~~~~p~~aVA~ 782 (840)
..-..+++.+.+++.++++.+.|.+.+++. .+++.|+|+||+|++ +++.|++.|+.. ++..+.||++|+|.
T Consensus 241 -~~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~ 313 (320)
T 2zgy_A 241 -DENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVN 313 (320)
T ss_dssp -SSCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHH
T ss_pred -CchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHH
Confidence 001245666677777777777777766652 468999999999987 999999999543 56778899999999
Q ss_pred HHHHHH
Q psy7262 783 GAAVQA 788 (840)
Q Consensus 783 GAal~a 788 (840)
||++++
T Consensus 314 G~~~~~ 319 (320)
T 2zgy_A 314 GMYLIG 319 (320)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=163.06 Aligned_cols=97 Identities=61% Similarity=0.917 Sum_probs=93.4
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++++|+|..|+|..+.|++||||+..+.+|..||+|.|.|+||+++|.++|+|+|++|.||+|+|+
T Consensus 36 ~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~p~G~~~IeVtf~iD~nGiL~V~ 115 (135)
T 1q5l_A 36 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVS 115 (135)
T ss_dssp ECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSCCSSSCCEEEEEEECTTSEEEEE
T ss_pred EEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCCCCceeEEEEEEEECCCCEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEecc
Q psy7262 81 AIEKSTGKENKITITND 97 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~ 97 (840)
+.++.++++..++|...
T Consensus 116 a~d~~tg~~~~i~i~~~ 132 (135)
T 1q5l_A 116 AKDKNSGKEQKITIKAS 132 (135)
T ss_dssp EEETTTCCEEEEEEECS
T ss_pred EEECCCCCEEEEEEecC
Confidence 99999999999999765
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-18 Score=201.27 Aligned_cols=133 Identities=55% Similarity=0.820 Sum_probs=123.3
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||+++|++++.+|+|..|+|+.+.|++||||+..+.+|..||+|.|.|+||+++|.++|+|+|++|.||+|+|+
T Consensus 377 ~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~ 456 (509)
T 2v7y_A 377 FTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVR 456 (509)
T ss_dssp EEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSCEEEE
T ss_pred eEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCceEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 134 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE 134 (840)
+.++.++++..++|... ..|+++|++++++++++++.+|++.+++.++||+||
T Consensus 457 a~~~~~g~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 457 AKDLGTNKEQSITIKSS-SGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp EEETTTCCEEEEEECSS-CSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC-----
T ss_pred EEEcCCCcEEEEEEEec-CCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 99999999999999887 569999999999999999999999999999999886
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.7e-17 Score=179.76 Aligned_cols=214 Identities=18% Similarity=0.209 Sum_probs=86.4
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeec
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
..+++|+|+..+..+|++|.+++ +.+|++.+.++.||.||+++++. .+.+|||+|+||||++.+.-+
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~------------~~~lVVDiG~g~T~v~pv~~G 172 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL------------LTGVVVDSGDGVTHICPVYEG 172 (394)
T ss_dssp -------------------------------------------------------------CCEEEECSSCEEEECEETT
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC------------ceEEEEEcCCCceEeeeeECC
Confidence 46999999999999999998865 77899999999999999988743 356999999999999876422
Q ss_pred cCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCch
Q psy7262 562 DGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 641 (840)
Q Consensus 562 ~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG 641 (840)
.- +.. ......+||
T Consensus 173 ~~-~~~-----------------------------------------------------------------~~~~~~~GG 186 (394)
T 1k8k_B 173 FS-LPH-----------------------------------------------------------------LTRRLDIAG 186 (394)
T ss_dssp EE-CST-----------------------------------------------------------------TCEEESCCH
T ss_pred EE-ccc-----------------------------------------------------------------ceEEeeccH
Confidence 10 000 001147899
Q ss_pred hhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCC----------------CeeEEEEecccCCeeeE
Q psy7262 642 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS----------------TQASIEIDSLFEGVDFY 705 (840)
Q Consensus 642 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------------~~~~i~i~~~~~~~~~~ 705 (840)
.++++.|.++|..+ .+........ ..+|..|+.+... ....+.++ ++ ..
T Consensus 187 ~~lt~~l~~~l~~~---~~~~~~~~~~-------~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lp---dg--~~ 251 (394)
T 1k8k_B 187 RDITRYLIKLLLLR---GYAFNHSADF-------ETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLP---DG--RI 251 (394)
T ss_dssp HHHHHHHHHHHHHT---TCCCCTTTTH-------HHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT---TS--CE
T ss_pred HHHHHHHHHHHHhc---CCCCCcHHHH-------HHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECC---CC--CE
Confidence 99999999888643 1111000111 2334444443321 11223322 22 24
Q ss_pred EEEehHHHH---HHHHHH-----HHHHHHHHHHHHHHcCCC--ccCccEEEEEcCCCCcHHHHHHHHhHcCC--------
Q psy7262 706 TSITRARFE---ELNADL-----FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFNG-------- 767 (840)
Q Consensus 706 ~~itr~e~e---~~~~~~-----i~~i~~~i~~~l~~a~~~--~~~Id~V~LvGG~s~~p~v~~~l~~~f~~-------- 767 (840)
+.|+.+.|. .++.|. ...|.+.|.+.|.++... ..-.+.|+|+||+|.+|.+.++|++.+..
T Consensus 252 i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~ 331 (394)
T 1k8k_B 252 IKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLK 331 (394)
T ss_dssp EEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCS
T ss_pred EEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcc
Confidence 677888773 344442 345788888888887432 33457899999999999999999877621
Q ss_pred ----------CcccCCCChhhHHHHHHHHHHH
Q psy7262 768 ----------KELNKSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 768 ----------~~v~~~~~p~~aVA~GAal~a~ 789 (840)
..+..+.+|..++..|++++|.
T Consensus 332 ~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 332 GDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp SCCCTTCCCCC---------------------
T ss_pred cccCCCCceEEEEecCCCcceeEEhhhHHhhC
Confidence 1233356788999999999986
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.4e-14 Score=153.60 Aligned_cols=209 Identities=15% Similarity=0.198 Sum_probs=135.8
Q ss_pred ceEEEeeCCCCCHHHH-HHHHHHHHHcCC------------cEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecC
Q psy7262 483 SNAVITVPAYFNDSQR-QATKDSGTIAGL------------NVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLG 549 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r-~~l~~Aa~~AG~------------~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiG 549 (840)
..+++++|..+...++ +++++++..++- ..+.+++||.||++++..+.... .....+..++|||||
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~-~~~~~~~~~~vvDiG 192 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKV-FKAFTEGKYSVLDFG 192 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEE-CHHHHTCEEEEEEEC
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCcc-ccccccCcEEEEEeC
Confidence 5899999999988887 589999886543 57889999999999987543210 000036789999999
Q ss_pred CCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEE
Q psy7262 550 GGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFE 629 (840)
Q Consensus 550 GGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~ 629 (840)
|||||++++. +..+..
T Consensus 193 ggTtd~~v~~-~~~~~~--------------------------------------------------------------- 208 (355)
T 3js6_A 193 SGTTIIDTYQ-NMKRVE--------------------------------------------------------------- 208 (355)
T ss_dssp SSCEEEEEEE-TTEECG---------------------------------------------------------------
T ss_pred CCcEEEEEEc-CCEEcc---------------------------------------------------------------
Confidence 9999999883 211000
Q ss_pred EEEeeCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCee--eEEE
Q psy7262 630 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD--FYTS 707 (840)
Q Consensus 630 ~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~--~~~~ 707 (840)
.......+|+..+++++.+++.+++. +..+. . . ..++.+. +.. .+.+ -.+.
T Consensus 209 --~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~----~---~i~~g~~---------~~~----~~~~~~k~~d 261 (355)
T 3js6_A 209 --EESFVINKGTIDFYKRIASHVSKKSE---GASIT--P----R---MIEKGLE---------YKQ----CKLNQKTVID 261 (355)
T ss_dssp --GGCEEESCCHHHHHHHHHHHTC-----------C--H----H---HHHSCCC--------------------------
T ss_pred --ccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--H----H---HHhcCCc---------ccc----cccccccccc
Confidence 00111468999999999999876532 11111 1 0 1111110 000 0000 0111
Q ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHH--HHHHHHhHcCCCcccCCCChhhHHHHHHH
Q psy7262 708 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK--VQKLLQDFFNGKELNKSINPDEAVAYGAA 785 (840)
Q Consensus 708 itr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~--v~~~l~~~f~~~~v~~~~~p~~aVA~GAa 785 (840)
+ .+.+++++++.++.|.+.|++.+.+ ++.++.|+|+||+|.++. |.+.|++.||.. .||..|+|+|+.
T Consensus 262 i-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~-----~~p~~anA~G~~ 331 (355)
T 3js6_A 262 F-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDVFEKA-----DDSQFSNVRGYE 331 (355)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSCEECC-----SSGGGHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHHCCCC-----CCcHHHHHHHHH
Confidence 2 2445667777777777777766653 466899999999999998 999999998543 799999999999
Q ss_pred HHHHHHcC
Q psy7262 786 VQAAILHG 793 (840)
Q Consensus 786 l~a~~l~~ 793 (840)
.++..+.+
T Consensus 332 ~~~~~~~~ 339 (355)
T 3js6_A 332 KLGELLKN 339 (355)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99876654
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-13 Score=140.54 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHc
Q psy7262 714 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 792 (840)
Q Consensus 714 e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~ 792 (840)
+++++.+.+.+.+.+.....+. ..++.|+|+||.+++|.|++.+++.+ +.++..+.+|++++|+|||++|....
T Consensus 183 ~di~a~~~~~v~~~l~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~-g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 183 EDIVAGIHTSVAKRVSSLVKRI----GVQRNVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----CCCSSEEEESGGGGCHHHHHHHHHHH-TSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----ccCCeEEEecCccchHHHHHHHHHHH-CCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 3455555555555555444433 35678999999999999999999999 78888999999999999999996544
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.2e-12 Score=140.44 Aligned_cols=224 Identities=18% Similarity=0.139 Sum_probs=139.1
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeec
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIE 561 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~ 561 (840)
..+++|.|...+...|+.|.+.+ +.+|++.+.++.+|.+|+++.+..... .....+-||||+|+|+|+++.+--+
T Consensus 124 ~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~----~~~~~tglVVDiG~g~T~v~PV~~G 199 (427)
T 3dwl_A 124 HYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKV----TDRSLTGTVVDSGDGVTHIIPVAEG 199 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTT----CSCCCCEEEEEESSSCEEEEEEETT
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccc----cCCCceEEEEECCCCceEEEEEECC
Confidence 58999999999999999999988 789999999999999999877543210 0113457999999999999887322
Q ss_pred cCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCch
Q psy7262 562 DGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 641 (840)
Q Consensus 562 ~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG 641 (840)
.++... .....+||
T Consensus 200 -~~l~~~-----------------------------------------------------------------~~rl~~gG 213 (427)
T 3dwl_A 200 -YVIGSS-----------------------------------------------------------------IKTMPLAG 213 (427)
T ss_dssp -EECGGG-----------------------------------------------------------------CEEESCCH
T ss_pred -EEehhh-----------------------------------------------------------------heeccccH
Confidence 111100 00146899
Q ss_pred hhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCe-------------eEEEEecc--cCCeeeEE
Q psy7262 642 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ-------------ASIEIDSL--FEGVDFYT 706 (840)
Q Consensus 642 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-------------~~i~i~~~--~~~~~~~~ 706 (840)
+++++.|.++|..+... .. =...+|..|+.+..... ..+.-..+ .++....+
T Consensus 214 ~~lt~~L~~lL~~~~~~------~~-------~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i 280 (427)
T 3dwl_A 214 RDVTYFVQSLLRDRNEP------DS-------SLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTI 280 (427)
T ss_dssp HHHHHHHHHTTC---------------------CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------C
T ss_pred HHHHHHHHHHHHHcCCC------ch-------hHHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEE
Confidence 99998888777543321 00 01234444544432110 00000001 12333356
Q ss_pred EEehHHHH---HHHHHH------HHHHHHHHHHHHHHcCCC--ccCccEEEEEcCCCCcHHHHHHHHhHc----C-----
Q psy7262 707 SITRARFE---ELNADL------FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFF----N----- 766 (840)
Q Consensus 707 ~itr~e~e---~~~~~~------i~~i~~~i~~~l~~a~~~--~~~Id~V~LvGG~s~~p~v~~~l~~~f----~----- 766 (840)
.|..++|. -++.|- ...|.++|.+.|.++... ..-...|+|+||+|.+|.+.++|++.+ +
T Consensus 281 ~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~ 360 (427)
T 3dwl_A 281 DVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHR 360 (427)
T ss_dssp BCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC---
T ss_pred EEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccc
Confidence 67777763 455552 245788888888875432 122466999999999999999888764 1
Q ss_pred ----------C--CcccCCCChhhHHHHHHHHHHH
Q psy7262 767 ----------G--KELNKSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 767 ----------~--~~v~~~~~p~~aVA~GAal~a~ 789 (840)
. .+|..+.++..++-.|++++|.
T Consensus 361 ~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilas 395 (427)
T 3dwl_A 361 SEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ 395 (427)
T ss_dssp ----------CCCCCEECCTTCTTHHHHHHHHHHH
T ss_pred cccccccCCCceeEEEecCCccccceecCceeecc
Confidence 1 1344455777899999999985
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=109.92 Aligned_cols=83 Identities=67% Similarity=1.091 Sum_probs=78.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHH
Q psy7262 122 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKL 201 (840)
Q Consensus 122 ~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~ 201 (840)
++++++++||.||+|||++|..|.++.+...+++++++.|.+.|+++++||+.+++++.++|+.++++|++++.||..|+
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k~ 82 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGL 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999876788999999999999999999999988888889999999999999999999999
Q ss_pred hcc
Q psy7262 202 YQG 204 (840)
Q Consensus 202 ~~~ 204 (840)
|+.
T Consensus 83 y~~ 85 (113)
T 3lof_A 83 YQG 85 (113)
T ss_dssp HHC
T ss_pred HHh
Confidence 975
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-10 Score=132.82 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=56.0
Q ss_pred eEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEe
Q psy7262 484 NAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILT 559 (840)
Q Consensus 484 ~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~ 559 (840)
.++||.|.......|+.|.+++ +.+|++.+.++.+|.||+++++. ..-||||+|+|+|+++.+-
T Consensus 116 pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~------------~tglVVDiG~g~T~vvPI~ 180 (498)
T 3qb0_A 116 PALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGR------------PNCLVVDIGHDTCSVSPIV 180 (498)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTC------------SSEEEEEECSSCEEEEEEE
T ss_pred ceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCC------------CeEEEEEcCCCcEEEEEEe
Confidence 6899999999999999999975 78999999999999999987743 1349999999999999874
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.2e-12 Score=136.07 Aligned_cols=203 Identities=13% Similarity=0.142 Sum_probs=133.0
Q ss_pred ceEEEeeCCCCCHH--HHHHHHHHHHHc--------C------CcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEE
Q psy7262 483 SNAVITVPAYFNDS--QRQATKDSGTIA--------G------LNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIF 546 (840)
Q Consensus 483 ~~vVitVPa~~~~~--~r~~l~~Aa~~A--------G------~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVv 546 (840)
..++++.|..+... +|+.+++....- | ++.+.+++||.+|.+.+. ....+..++|+
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~--------~~~~~~~v~vv 177 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ--------ENFKNKNVAVI 177 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC--------CCCTTCEEEEE
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc--------hhhccCCEEEE
Confidence 58999999998743 677787776521 1 245788999998876542 11256789999
Q ss_pred ecCCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCC
Q psy7262 547 DLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDG 626 (840)
Q Consensus 547 DiGGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~ 626 (840)
||||||||+++++.+.-+.
T Consensus 178 DiGggTtd~~v~~~g~~~~------------------------------------------------------------- 196 (329)
T 4apw_A 178 DFGGLNMGFSLYRNCVVNP------------------------------------------------------------- 196 (329)
T ss_dssp EECSSCEEEEEEETTEECG-------------------------------------------------------------
T ss_pred EeCCCcEEEEEEECCEEee-------------------------------------------------------------
Confidence 9999999999986321000
Q ss_pred eEEEEEeeCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCCCCeeEEEEecccCCeeeEE
Q psy7262 627 IFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYT 706 (840)
Q Consensus 627 ~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~ 706 (840)
...+...+||..+++.+.+++.+ .+++..+... .+|++|+. . .. . ... +. .
T Consensus 197 -----~~~~~~~~G~~~~~~~i~~~l~~---~~~g~~i~~~---------~~e~i~~~--g--~~--~---~g~--~~-~ 247 (329)
T 4apw_A 197 -----SERFIEEHGVKDLIIRVGDALTD---LNNGNLITNE---------QAESALNN--G--YM--K---KGG--EI-D 247 (329)
T ss_dssp -----GGCEEESCCHHHHHHHHHTSSSS---CSSCSCTTSB---------TTTTCSSS--C--SS--C---EEC--TT-C
T ss_pred -----ccccchhhHHHHHHHHHHHHHHh---hccCCCCCHH---------HHHHHHhc--C--Cc--c---cCC--cc-h
Confidence 00112568999999999887754 0222211110 22233322 0 00 0 011 11 1
Q ss_pred EEehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHH
Q psy7262 707 SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 786 (840)
Q Consensus 707 ~itr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal 786 (840)
.+..+++++++++.++.|.+.+++. +..+..++.|+|+||+|.+ +.+.|++.|+ .++....||..|+|+|+..
T Consensus 248 ~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~~~-~~v~v~~~P~~a~a~G~~~ 320 (329)
T 4apw_A 248 TESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKTYP-NNSIITNNSQWTTCEGLYK 320 (329)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHHST-TCEECCSSGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHHcC-CCCEecCCChhhHHHHHHH
Confidence 2446777777777777777766654 3455568999999999998 6799999994 3566788999999999998
Q ss_pred HHHH
Q psy7262 787 QAAI 790 (840)
Q Consensus 787 ~a~~ 790 (840)
++..
T Consensus 321 ~~~~ 324 (329)
T 4apw_A 321 VAVA 324 (329)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8754
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-10 Score=105.48 Aligned_cols=87 Identities=60% Similarity=0.988 Sum_probs=74.8
Q ss_pred HHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q psy7262 123 QKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLY 202 (840)
Q Consensus 123 ~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~ 202 (840)
+++++++||.||+|||++|..|.++++...++++++++|.+.|+++++||++++++++++|+.++++|++++.||..|+|
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~y 92 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999997655888999999999999999999999876667899999999999999999999998
Q ss_pred ccCCCCC
Q psy7262 203 QGSGGAP 209 (840)
Q Consensus 203 ~~~~~~~ 209 (840)
+..++.+
T Consensus 93 ~~~~~~~ 99 (120)
T 2p32_A 93 QSAGGAP 99 (120)
T ss_dssp CC-----
T ss_pred HhccCCC
Confidence 6433333
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=129.05 Aligned_cols=197 Identities=23% Similarity=0.227 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHc-CC--cEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCce
Q psy7262 496 SQRQATKDSGTIA-GL--NVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERN 572 (840)
Q Consensus 496 ~~r~~l~~Aa~~A-G~--~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~ 572 (840)
.+-+.+.+|.+.+ |+ +.-. .||.||++.+..+.. .+..+.++|+||||||+|++.-+.-+
T Consensus 368 ~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE-------~eLGvaiIDmGGGTTd~sVf~~G~lv-------- 430 (610)
T 2d0o_A 368 LQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPG-------TTRPLAILDLGAGSTDASIINPKGDI-------- 430 (610)
T ss_dssp CCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTT-------CCSSEEEEEECSSEEEEEEECTTCCE--------
T ss_pred HHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-------CcCCeEEEEeCCCcceEEEEcCCcEE--------
Confidence 3467788999999 99 5555 999999999865543 67789999999999999998533210
Q ss_pred eEEEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHH
Q psy7262 573 VLIFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 652 (840)
Q Consensus 573 ~~~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 652 (840)
.......||+.+...++.-|
T Consensus 431 ------------------------------------------------------------~a~~ip~gG~~VT~DIA~~L 450 (610)
T 2d0o_A 431 ------------------------------------------------------------IATHLAGAGDMVTMIIAREL 450 (610)
T ss_dssp ------------------------------------------------------------EEEEEECSHHHHHHHHHHHH
T ss_pred ------------------------------------------------------------EEEEeccchHHHHHHHHHHh
Confidence 00114579999999988776
Q ss_pred HHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCC----------CCeeEEEE--ecccCC---e------eeEEEEehH
Q psy7262 653 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS----------STQASIEI--DSLFEG---V------DFYTSITRA 711 (840)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~----------~~~~~i~i--~~~~~~---~------~~~~~itr~ 711 (840)
.-. =+..||+.|+ ... .+...+.+ +.+... . +.-..| +.
T Consensus 451 gt~------------------d~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp~~~~Rv~~~~~~~L~~I-~p 510 (610)
T 2d0o_A 451 GLE------------------DRYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPL-PG 510 (610)
T ss_dssp TCC------------------CHHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSCEEEC-CT
T ss_pred CCC------------------CHHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceeeeeecccccceeee-CC
Confidence 321 0236788887 421 11223444 222110 1 112355 66
Q ss_pred H--HHHHHHHHHHHHHHH--HHHHHHHcCC-----CccCccEEEEEcCCCCcHHHHHHHHhHcCCCcc-------cCCCC
Q psy7262 712 R--FEELNADLFRGTMEP--VEKSLRDAKM-----DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL-------NKSIN 775 (840)
Q Consensus 712 e--~e~~~~~~i~~i~~~--i~~~l~~a~~-----~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v-------~~~~~ 775 (840)
+ +|+ ++-+-+++.+. +.++|+.++. +..+|..|+||||+|.++.+.+..++.|..-++ .....
T Consensus 511 R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~VRiGrP~~~gv~g 589 (610)
T 2d0o_A 511 DLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEG 589 (610)
T ss_dssp TCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTST
T ss_pred CcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCC
Confidence 6 666 55555554444 2334555432 345779999999999999999999999954122 23458
Q ss_pred hhhHHHHHHHHHHHH
Q psy7262 776 PDEAVAYGAAVQAAI 790 (840)
Q Consensus 776 p~~aVA~GAal~a~~ 790 (840)
|..|+|.|++++-+.
T Consensus 590 P~fAtAvGLlly~~~ 604 (610)
T 2d0o_A 590 PRNAVATGLILSWHK 604 (610)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhh
Confidence 999999999987653
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-10 Score=128.18 Aligned_cols=193 Identities=21% Similarity=0.179 Sum_probs=128.4
Q ss_pred HHHHHHHHHHc-CC--cEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEeeccCcccCCCCceeE
Q psy7262 498 RQATKDSGTIA-GL--NVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVL 574 (840)
Q Consensus 498 r~~l~~Aa~~A-G~--~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~ 574 (840)
-+.+.+|.+.+ |+ +.-. .||.||++.+..+.. .+..+.++|+||||||+|++.-+.-+
T Consensus 372 m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE-------~elGvaiIDmGgGTTd~sVf~~g~lv---------- 432 (607)
T 1nbw_A 372 MQVIARELSARLQTEVVVGG--VEANMAIAGALTTPG-------CAAPLAILDLGAGSTDAAIVNAEGQI---------- 432 (607)
T ss_dssp SCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTT-------CCSSEEEEEECSSEEEEEEECSSSCE----------
T ss_pred HHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-------CcCCeEEEEeCCCcceEEEEcCCcEE----------
Confidence 34588888888 98 4444 999999999865543 67789999999999999998533210
Q ss_pred EEecCCCccccceeeeeecccccCCCCCCceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHH
Q psy7262 575 IFDLGGGTFDVSILTIEEYFPLRSWGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 654 (840)
Q Consensus 575 ~~d~Gg~~~d~~~~~~~~~~p~~~~~~~~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~ 654 (840)
.......||+.+...++.-|.-
T Consensus 433 ----------------------------------------------------------~a~~ip~gG~~VT~DIA~~Lg~ 454 (607)
T 1nbw_A 433 ----------------------------------------------------------TAVHLAGAGNMVSLLIKTELGL 454 (607)
T ss_dssp ----------------------------------------------------------EEEEEECCHHHHHHHHHHHHTC
T ss_pred ----------------------------------------------------------EEEEeccchHHHHHHHHHHhCC
Confidence 0011457999999998877632
Q ss_pred HHHHhccCCccccHHHHHHHHHHHHHHHHHcCC----------CCeeEEEE--ecccCC---e------eeEEEEehHH-
Q psy7262 655 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSS----------STQASIEI--DSLFEG---V------DFYTSITRAR- 712 (840)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~----------~~~~~i~i--~~~~~~---~------~~~~~itr~e- 712 (840)
. =+..||+.|+ ... .+...+.+ +.+... . +.-..| +.+
T Consensus 455 ~------------------d~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp~~~~R~~~~~~~~L~~I-~~R~ 514 (607)
T 1nbw_A 455 E------------------DLSLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPI-DNAS 514 (607)
T ss_dssp S------------------CHHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEE-CCSS
T ss_pred C------------------CHHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceeeeeecccccceeee-CCCc
Confidence 1 0236788887 421 11223444 222110 1 122355 666
Q ss_pred -HHHHHHHHHHHHHHH--HHHHHHHcCCC-----ccCccEEEEEcCCCCcHHHHHHHHhHcCCCc-------ccCCCChh
Q psy7262 713 -FEELNADLFRGTMEP--VEKSLRDAKMD-----KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE-------LNKSINPD 777 (840)
Q Consensus 713 -~e~~~~~~i~~i~~~--i~~~l~~a~~~-----~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~-------v~~~~~p~ 777 (840)
+|+ ++-+-+++.+. +.++|+.++.. ..+|..|+||||+|.++.+.+..++.|..-+ ......|.
T Consensus 515 ~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiGrP~~~g~~gP~ 593 (607)
T 1nbw_A 515 PLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPR 593 (607)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSC
T ss_pred chHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCCch
Confidence 776 55555555544 45558877653 2466999999999999999999999994412 22345899
Q ss_pred hHHHHHHHHHH
Q psy7262 778 EAVAYGAAVQA 788 (840)
Q Consensus 778 ~aVA~GAal~a 788 (840)
.|+|.|+++|-
T Consensus 594 fAtAvGLlly~ 604 (607)
T 1nbw_A 594 NAVATGLLLAG 604 (607)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999765
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=6.8e-10 Score=101.05 Aligned_cols=81 Identities=68% Similarity=1.098 Sum_probs=71.5
Q ss_pred HHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7262 126 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 205 (840)
Q Consensus 126 ~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~~ 205 (840)
+.++||.||+|||.+|..|.++++...++++++++|.+.|+++++||++++++++++|+.++++|++++.+|..|+|+..
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~~ 81 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSA 81 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999997556788999999999999999999999766666789999999999999999999999643
Q ss_pred C
Q psy7262 206 G 206 (840)
Q Consensus 206 ~ 206 (840)
+
T Consensus 82 ~ 82 (113)
T 1ud0_A 82 G 82 (113)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.7e-07 Score=104.82 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHhCCccchhhhhhccCCccceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHH
Q psy7262 446 PEEVSSMVLTKMKETAE-AYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAA 523 (840)
Q Consensus 446 ~~ev~a~~L~~l~~~a~-~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAA 523 (840)
.++...+ +..|++++- ..++....+. ....++||.|..++...|+.|.+.+ +..|++.+.++.++.+|+
T Consensus 170 ~~~~wdd-~e~iw~~~~~~~L~i~~~d~--------~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ 240 (593)
T 4fo0_A 170 LTAVLAD-IEVIWSHAIQKYLEIPLKDL--------KYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCAT 240 (593)
T ss_dssp HHHHHHH-HHHHHHHHHHHTSCCCGGGG--------GGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHH
T ss_pred hhcCHHH-HHHHHHHHHHHhcCCCchhc--------cCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHH
Confidence 4455555 345666654 3454432100 1146999999999999998887765 668999999999999999
Q ss_pred HHhhcccccCCCCCCCCceEEEEecCCCceEEEEEe
Q psy7262 524 IAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILT 559 (840)
Q Consensus 524 l~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~ 559 (840)
++++. .+-+|||+|.++|.++.+-
T Consensus 241 ya~G~------------~tglVVDiG~~~T~v~PV~ 264 (593)
T 4fo0_A 241 YGSGL------------SSTCIVDVGDQKTSVCCVE 264 (593)
T ss_dssp HHHTC------------SEEEEEEECSSCEEEEEEE
T ss_pred HHCCC------------CceEEEEeCCCceeeeeeE
Confidence 88743 3569999999999988774
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=97.75 E-value=8.3e-05 Score=78.17 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHH
Q psy7262 715 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 791 (840)
Q Consensus 715 ~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l 791 (840)
++++.+++.+...+.+.++..+. .+.|+++||.+++|.+++.+++.+ +.++..+.+|+.+.|.|||++|...
T Consensus 186 di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~l-g~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 186 DIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHH-CCCeEeCCCcchHhHHHHHHHHHHh
Confidence 34444555555545444443221 367999999999999999999999 7788888888889999999999764
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00039 Score=79.96 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=57.2
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEe
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILT 559 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~ 559 (840)
..+++|.|..++...|+.|.+.+ +..|++.+.++.+|.||+++++. ...-||||+|+|+|+++.+-
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl-----------~ttGLVVDiG~g~T~VvPV~ 288 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI-----------STSTCVVNIGAAETRIACVD 288 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC-----------SSCEEEEEECSSCEEEEEEE
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC-----------CCceEEEcCCCceEEEEEEe
Confidence 57999999999999999999888 46999999999999999887732 23569999999999998873
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.035 Score=59.91 Aligned_cols=47 Identities=21% Similarity=0.052 Sum_probs=41.1
Q ss_pred ccEEEEEcC-CCCcHHHHHHHHhHc-----CCCcccCCCChhhHHHHHHHHHH
Q psy7262 742 IHDIVLVGG-STRIPKVQKLLQDFF-----NGKELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 742 Id~V~LvGG-~s~~p~v~~~l~~~f-----~~~~v~~~~~p~~aVA~GAal~a 788 (840)
++.|+++|| .+..|.+++.|++.+ ++.++..+.+|..+-|.|||+.+
T Consensus 306 i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 306 IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHHHHHHh
Confidence 456999999 999999999999986 34677888899999999999876
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.018 Score=66.78 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=61.9
Q ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHH
Q psy7262 708 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 787 (840)
Q Consensus 708 itr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~ 787 (840)
-++.++..++..+++.+.-.++..++........++.|.++||+++++++.+.+.+.+ +.+|..+ +..++.|.|||++
T Consensus 409 ~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGAA~l 486 (554)
T 3l0q_A 409 TTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAMLLP-EESEAMLLGSAMM 486 (554)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHH-CCEEEEE-SCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhh-CCeEEec-CCCcchHHHHHHH
Confidence 4677775445566666655555544433223345789999999999999999999999 7788765 3467899999999
Q ss_pred HHHHcC
Q psy7262 788 AAILHG 793 (840)
Q Consensus 788 a~~l~~ 793 (840)
|+.-.+
T Consensus 487 A~~a~G 492 (554)
T 3l0q_A 487 GTVAAG 492 (554)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 987665
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.018 Score=65.67 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 715 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 715 ~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
++++.+++.+.-.++..++........++.|.++||+++++.+.+.+.+.+ +.+|..+..++.+.|.|||+.|+.-.+
T Consensus 360 ~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~~~~e~~~alGAA~lA~~~~g 437 (484)
T 2itm_A 360 ELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHH-CCCEEEESCTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHh-CCeEEeCCCCCcccHHHHHHHHHHHcC
Confidence 334445555544444444433222345788999999999999999999999 788877766665689999999976555
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.025 Score=65.27 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 714 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 714 e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
..+++.+++.+.-.++..++..+.....++.|.++||+++++++.+.+.+.+ +.+|..+ .+.++.|.|||+.|+.-.+
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVF-DAPVYVI-DTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHH-TSCEEEC-CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHh-CCceEec-CCCCchHHHHHHHHHHHhC
Confidence 4555666666666666677766555556789999999999999999999999 7777665 4577999999999976443
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.038 Score=63.34 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcc-cCCCChhhHHHHHHHHHHHHHcC
Q psy7262 716 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL-NKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v-~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
+++.+++.+.-.++..++.... .. ++.|.++||+++++++.+.+.+.+ +.+| ..+ .+.++.|.|||++|+.-.+
T Consensus 379 l~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~~-~~~e~~alGaA~lA~~a~G 453 (511)
T 3hz6_A 379 ILLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNL-NVSLLVKP-DAHLHPLRGLAALAAVELE 453 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHH-TCEEEECC-CGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHH-CCeeEEec-CCCCchHHHHHHHHHHHhC
Confidence 3445555555555555554433 44 889999999999999999999999 7888 654 5888999999999987665
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.029 Score=64.17 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 716 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
+++.+++.+.-.++..++........++.|.++||+++++++.+.+.+.+ +.+|..+ ++.++.|.|||++|+.-.+
T Consensus 368 l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 443 (504)
T 3ll3_A 368 MARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIF-NVPIVTM-KEQQSGTLAAMFLARQALG 443 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhh-CCeEEec-CCCCchhHHHHHHHHHHcC
Confidence 34445555544444444333222235889999999999999999999999 7777665 4566899999999987655
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.021 Score=65.41 Aligned_cols=73 Identities=29% Similarity=0.446 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHH---HHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHc
Q psy7262 716 LNADLFRGTMEPVEK---SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 792 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~---~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~ 792 (840)
+++.+++.+.-.++. .|++.+ ..++.|.++||+++++++.+.+.+.+ +.+|..+ .+.++.|.|||++|+.-.
T Consensus 399 l~RAvlEgia~~~r~~l~~l~~~g---~~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~ 473 (515)
T 3i8b_A 399 LARAFVEGLLCSQRDCLELIRSLG---ASITRILLIGGGAKSEAIRTLAPSIL-GMDVTRP-ATDEYVAIGAARQAAWVL 473 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---CCCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CCCCEEEEECchhcCHHHHHHHHHHh-CCceEec-CCcccHHHHHHHHHHHHc
Confidence 334444444333333 344444 35789999999999999999999999 7777665 455688999999997655
Q ss_pred C
Q psy7262 793 G 793 (840)
Q Consensus 793 ~ 793 (840)
+
T Consensus 474 G 474 (515)
T 3i8b_A 474 S 474 (515)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.033 Score=63.55 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 715 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 715 ~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
++++.+++.+.-.++..++...... .++.|.++||+++++++.+.+.+.+ +.+|..+. +.++.|.|||+.|+.-.+
T Consensus 368 ~l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~~-~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 368 HLARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADIL-NRKVIRPV-VKETTALGAAYLAGLAVD 443 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEES-CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhc-CCeEEEcC-CCcchHHHHHHHHHHHhC
Confidence 3445566666666666666554333 6788999999999999999999999 77787653 455899999999986655
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.049 Score=57.13 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=53.0
Q ss_pred EehHHHH-HHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcC-CCCcHHHHHHHHhHc--CCCcccCCCChhhHHHHH
Q psy7262 708 ITRARFE-ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGG-STRIPKVQKLLQDFF--NGKELNKSINPDEAVAYG 783 (840)
Q Consensus 708 itr~e~e-~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG-~s~~p~v~~~l~~~f--~~~~v~~~~~p~~aVA~G 783 (840)
.+++++- .++..+.++|..+...+.+.. .++.|+++|| .+..|.+++.+++.+ .+.++..+.+|..+.|.|
T Consensus 207 ~~~eDIaasl~~sV~~~I~~la~~~a~~~-----~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlG 281 (287)
T 2ews_A 207 FTPSNKLAAVIGVVGEVVTTMAITVAREF-----KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIG 281 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHH
Confidence 3455543 333444444443333333333 3557999999 899999999999874 477888899999999999
Q ss_pred HHHHH
Q psy7262 784 AAVQA 788 (840)
Q Consensus 784 Aal~a 788 (840)
||+.+
T Consensus 282 AaL~~ 286 (287)
T 2ews_A 282 ALYLE 286 (287)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99864
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.037 Score=63.23 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=44.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|.++||+++++++.+.+.+.+ +.+|..+ .+.++.|.|||++|+.-.+
T Consensus 404 ~~~~i~~~GG~aks~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~G 454 (501)
T 3g25_A 404 DVQSLRVDGGAVKNNFIMQFQADIV-NTSVERP-EIQETTALGAAFLAGLAVG 454 (501)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEecchhcCHHHHHHHHHHh-CCceEec-CCCcchHHHHHHHHHHHhC
Confidence 4789999999999999999999999 7777655 4667899999999987655
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.028 Score=64.51 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=42.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|.++||+++++++.+.+.+.+ +.+|..+ .+.++.|.|||++|+.-.|
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~G 475 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLL-DAPVDRP-VILETTALGVAWLAGSRAG 475 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCCCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCccccCHHHHHHHHHHh-CCeEEec-CCCccHHHHHHHHHHHHcC
Confidence 5788999999999999999999999 7777665 4566899999999987655
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.055 Score=61.71 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 716 LNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~~l~~a~~-~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
+++.+++.+.-.++..++.... ....++.|.++||+++++++.+.+.+.+ +.+|..+ .+.++.|.|||+.|+.-.+
T Consensus 372 ~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~G 448 (495)
T 2dpn_A 372 LARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLL-GVPVAVP-EVTETTALGAALMAGVGAG 448 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHh-CCeeEec-CCcccHHHHHHHHHHhhcC
Confidence 3444555555444444444321 2235678999999999999999999999 7777655 4456899999999976555
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=94.34 E-value=0.043 Score=62.79 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=44.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|.++||+++++++.+.+.+.+ +.+|..+ .+.++.|.|||++|+.-.|
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 453 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQRA-ANLETTALGAAYLAGLAVG 453 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSEEEEC-SSSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEecccccCHHHHHHHHHHh-CCeEEec-CCCcchhHHHHHHHHHHhC
Confidence 4788999999999999999999999 7777655 4667999999999987655
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.038 Score=63.56 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=44.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|.++||+++++++.+.+.+.+ +.+|..+ ...++.|.|||+.|+.-.|
T Consensus 402 ~~~~i~v~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~E~~alGAA~lA~~a~G 452 (526)
T 3ezw_A 402 RLHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALGAAYLAGLAVG 452 (526)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECchhhCHHHHHHHHHHH-CCEEEeC-CCCchHHHHHHHHHHHHhC
Confidence 4789999999999999999999999 8888765 4557889999999987665
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.04 Score=63.09 Aligned_cols=51 Identities=25% Similarity=0.205 Sum_probs=43.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|.++||+++++++.+.+.+.+ +.+|..+.. .++.|.|||++|+.-.+
T Consensus 400 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~~~-~e~~alGaA~lA~~a~G 450 (508)
T 3ifr_A 400 APQRFFASDGGTRSRVWMGIMADVL-QRPVQLLAN-PLGSAVGAAWVAAIGGG 450 (508)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEEEC-CSTHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCcccCHHHHHHHHHHh-CCeEEecCC-CCchHHHHHHHHHHHhC
Confidence 4788999999999999999999999 778876644 45889999999987665
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.047 Score=62.40 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=43.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.|.++||+++++++.+.+.+.+ +.+|..+ .+.++.|.|||+.|+.-.+
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 453 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQL-GVDVVRP-KVAETTALGAAYAAGIAVG 453 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCCcccCHHHHHHHHHHh-CCeEEeC-CCCcchHHHHHHHHHhhcC
Confidence 4678999999999999999999999 7777655 4566899999999976555
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.061 Score=61.48 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=43.1
Q ss_pred Cc-cEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QI-HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~I-d~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.+ +.|.++||.++++++.+.+.+.+ +.+|..+ .+.++.|.|||+.|+.-.+
T Consensus 406 ~~~~~i~~~GG~a~s~~~~Q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~~~G 457 (503)
T 2w40_A 406 EMLHVLRCDGGMTKNKPFMQFNSDII-NTKIEVS-KYKEVTSLGAAVLAGLEVK 457 (503)
T ss_dssp SCCSCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred CccceEEEeCccccCHHHHHHHHHHH-CCeEEec-CCCcchHHHHHHHHHHHhC
Confidence 35 77999999999999999999999 7777655 4556899999999987655
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.11 Score=59.08 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=39.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHH
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~ 790 (840)
.++.|.++||+++++++.+.+.+.+ +.+|..+. .++.|.|||+.|..
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~~--~e~~alGaa~~A~~ 439 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLM 439 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEECC--TTHHHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHH-CCeeecCC--ccHhHHHHHHHHHH
Confidence 4688999999999999999999999 77886553 58899999666643
|
| >3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A | Back alignment and structure |
|---|
Probab=90.83 E-value=0.15 Score=54.09 Aligned_cols=69 Identities=14% Similarity=0.039 Sum_probs=39.4
Q ss_pred ehHHHHHHH----HHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCccc-----C-CCChhh
Q psy7262 709 TRARFEELN----ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN-----K-SINPDE 778 (840)
Q Consensus 709 tr~e~e~~~----~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~-----~-~~~p~~ 778 (840)
+.++.+++. +..++.|.+.+.+.+++.+ +..|+.+||+ ++|-..+.+.+ ++. . +.+..-
T Consensus 244 ~~~~~~~lA~~~~~~q~~~I~~av~~v~~~~~-----~~~vv~aG~G---~~L~~~la~~~---~~~~~~~~i~~~~s~v 312 (334)
T 3cet_A 244 SEIDAENIAKNYYELWKELILENVENVAEKYG-----SKKVVITGLG---ENILKDALADF---EVISVAERYGKDVSLA 312 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCEEEEESTT---HHHHHHHTTTS---EEEEHHHHHCHHHHHS
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCeEEEeCCc---HHHHHHHHhhC---CeeehhcccCcccccc
Confidence 445555444 4455556666666665543 3378999977 46666665442 222 1 223445
Q ss_pred HHHHHHHHHH
Q psy7262 779 AVAYGAAVQA 788 (840)
Q Consensus 779 aVA~GAal~a 788 (840)
+-|.|+|++-
T Consensus 313 apA~avA~l~ 322 (334)
T 3cet_A 313 TPSFAVAELL 322 (334)
T ss_dssp HHHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 6788888663
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=0.54 Score=49.97 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEe
Q psy7262 498 RQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILT 559 (840)
Q Consensus 498 r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~ 559 (840)
...+..+-+..|++.-.+-.|.||...+.+.....+ .....+|+|||||+|.+++.+
T Consensus 100 ~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~-----~~~~~lvvDIGGGStEl~~~~ 156 (315)
T 1t6c_A 100 EEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLK-----PEGEVCVVDQGGGSTEYVFGK 156 (315)
T ss_dssp HHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTC-----CCSEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcc-----cCCCEEEEEeCCCcEEEEEEe
Confidence 344555556789987666677787766555544432 245689999999999999875
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=87.72 E-value=0.36 Score=54.61 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=52.0
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhH-cCCCcccCCCChhhHHHHHHHHHHHH
Q psy7262 714 EELNADLFRG--TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF-FNGKELNKSINPDEAVAYGAAVQAAI 790 (840)
Q Consensus 714 e~~~~~~i~~--i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~-f~~~~v~~~~~p~~aVA~GAal~a~~ 790 (840)
..+.+.+++. +.=.+++.++.... .+.|.++||++++|+..+.+.+. + +.+|..+. ..++.|.|||++|+.
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~-g~pV~~~~-~~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRP-DCAVYTAN-AHNDVSFGALRLIDP 435 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHST-TSEEEEES-SCCCTTGGGHHHHCT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcC-CCeEEEcC-CCchHHHHHHHHhCc
Confidence 3455555553 44455555555432 26899999999999999999999 9 88887664 445789999999964
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=84.84 E-value=1.8 Score=46.53 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEe
Q psy7262 499 QATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILT 559 (840)
Q Consensus 499 ~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~ 559 (840)
..+.++-+..|++.-.+--|-||...+.+.....+. ......++|+|||||+|+++++.
T Consensus 106 ~fl~~v~~~tGi~ieVIsG~eEA~l~~~gv~~~~~~--~~~~~~~lviDIGGGStel~~~~ 164 (343)
T 3cer_A 106 EFEDEIERILGVRPEVIPGTEEADLSFLGATSVVNR--DDLPAPYLVVDLGGGSTELVIGG 164 (343)
T ss_dssp HHHHHHHHHHSSCCEECCHHHHHHHHHHHHHSSCCT--TTCCSSEEEEEECSSCEEEEECC
T ss_pred HHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhCcc--ccccCCEEEEEeCCCceEEEEee
Confidence 345666666799754444444555433344333221 11235689999999999999875
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=84.58 E-value=1.3 Score=47.10 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCcEEEeecchHHHHHHhhcccccCCCCCCCCceEEEEecCCCceEEEEEe
Q psy7262 498 RQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAGSGERNVLIFDLGGGTFDVSILT 559 (840)
Q Consensus 498 r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~~~~~~~~~~~~~vLVvDiGGGTtDis~~~ 559 (840)
...+.++-+..|++.-.+--|-||...+.+.....+. .+...||+|||||+|.+++++
T Consensus 92 ~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~----~~~~~lviDIGGGStEl~~~~ 149 (315)
T 3mdq_A 92 QVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPM----EDHISLAMDIGGGSVEFIIGN 149 (315)
T ss_dssp HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCC----TTCCEEEEEECSSCEEEEEEC
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCC----CCCCEEEEEeCCCceEEEEEE
Confidence 3345666667899775555566666444444443221 235689999999999999985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 840 | ||||
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 4e-88 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 9e-84 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 7e-74 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 9e-66 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 3e-57 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 9e-10 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 1e-41 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 8e-06 | |
| d1ud0a_ | 84 | a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: | 1e-38 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 5e-36 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 9e-05 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 3e-33 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 1e-06 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 6e-27 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 2e-04 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 2e-23 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 2e-21 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 0.001 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 6e-20 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 3e-18 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 4e-05 |
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 275 bits (704), Expect = 4e-88
Identities = 174/190 (91%), Positives = 187/190 (98%)
Query: 602 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 661
ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+K
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHK 62
Query: 662 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 721
KD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLF
Sbjct: 63 KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLF 122
Query: 722 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 781
RGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVA
Sbjct: 123 RGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVA 182
Query: 782 YGAAVQAAIL 791
YGAAVQAAIL
Sbjct: 183 YGAAVQAAIL 192
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 264 bits (675), Expect = 9e-84
Identities = 89/198 (44%), Positives = 129/198 (65%), Gaps = 9/198 (4%)
Query: 602 GERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 657
G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 658 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV----DFYTSITRARF 713
+ DL + A++RL+ A E+AK LSS+ Q + + + +TRA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 714 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 773
E L DL ++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 774 INPDEAVAYGAAVQAAIL 791
+NPDEAVA GAAVQ +L
Sbjct: 180 VNPDEAVAIGAAVQGGVL 197
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 237 bits (605), Expect = 7e-74
Identities = 152/188 (80%), Positives = 166/188 (88%), Gaps = 13/188 (6%)
Query: 344 TSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 403
T + GVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRL
Sbjct: 11 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRL 70
Query: 404 IGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEA 463
IGR+F+DA VQ+DMKHWPF VV+D G+PK++VEYKGE K+F+PEEVSSMVLTKMKE AE
Sbjct: 71 IGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAE- 129
Query: 464 YLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAA 523
AYLGKTV+NAV+TVPAYFNDSQRQATKD+GTIAGLNVLRIINEPTAAA
Sbjct: 130 ------------AYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 177
Query: 524 IAYGLDKK 531
IAYGLDKK
Sbjct: 178 IAYGLDKK 185
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 215 bits (548), Expect = 9e-66
Identities = 91/185 (49%), Positives = 120/185 (64%), Gaps = 19/185 (10%)
Query: 349 GVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRK 407
+ ++ N +G+RTTPS +A+T D E L+G AK Q NP NT+F KRLIGR+
Sbjct: 15 AIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRR 74
Query: 408 FEDATVQADMKHWPFEVV-SDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLG 466
F+D VQ D+ PF+++ +D G ++V+ + P ++S+ VL KMK+TAE YLG
Sbjct: 75 FQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQ----KMAPPQISAEVLKKMKKTAEDYLG 130
Query: 467 KTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAY 526
+ V+ AVIT VPAYFND+QRQATKD+G IAGL V RIINEPTAAA+AY
Sbjct: 131 EPVTEAVIT-------------VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAY 177
Query: 527 GLDKK 531
GLDK
Sbjct: 178 GLDKG 182
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 190 bits (485), Expect = 3e-57
Identities = 121/134 (90%), Positives = 129/134 (96%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPR
Sbjct: 26 MTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPR 85
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 120
GVPQIEVTFDIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAED
Sbjct: 86 GVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAED 145
Query: 121 EKQKAVISAKNSLE 134
EKQ+ +S+KNSLE
Sbjct: 146 EKQRDKVSSKNSLE 159
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.1 bits (135), Expect = 9e-10
Identities = 24/25 (96%), Positives = 24/25 (96%)
Query: 796 SEEVQDLLLLDVTPLSLGIETAGGV 820
SE VQDLLLLDVTPLSLGIETAGGV
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGV 25
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 145 bits (368), Expect = 1e-41
Identities = 60/99 (60%), Positives = 72/99 (72%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
MT LI +NTTIPTK +Q F+T DNQ V I V +GER DN LG+F L I PAPR
Sbjct: 20 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPR 79
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 99
G+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 80 GMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 43.4 bits (102), Expect = 8e-06
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 803 LLLDVTPLSLGIETAGGV 820
LLLDVTPLSLGIET GGV
Sbjct: 2 LLLDVTPLSLGIETMGGV 19
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 84 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 135 bits (342), Expect = 1e-38
Identities = 56/81 (69%), Positives = 68/81 (83%)
Query: 129 AKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 188
+ LESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QK
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 189 ELEAICNPIITKLYQGSGGAP 209
ELE +CNPIITKLYQ +GG P
Sbjct: 62 ELEKVCNPIITKLYQSAGGMP 82
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 129 bits (326), Expect = 5e-36
Identities = 45/99 (45%), Positives = 60/99 (60%)
Query: 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 60
+ +I RNTTIP + Q FTT+ D Q + I V +GER + +D L +F L IP P
Sbjct: 17 VEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPA 76
Query: 61 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 99
G I VTF +DA+G+L+VTA+EKSTG E I + G
Sbjct: 77 GGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 40.4 bits (94), Expect = 9e-05
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 805 LDVTPLSLGIETAGGV 820
+DV PLSLG+ET GG+
Sbjct: 1 MDVIPLSLGLETMGGL 16
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 125 bits (313), Expect = 3e-33
Identities = 31/201 (15%), Positives = 74/201 (36%), Gaps = 16/201 (7%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
++ D+GGGT +V+++++ + + G++ D +V + + ++ +
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIVTW-----ESIRIAGDEMDEAIVQYVRETYRVAIGE 60
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
+ + + + ++ L G+ ++ E +
Sbjct: 61 RTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVV 115
Query: 723 GTMEPVEKSLRDAKMDKAQ---IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 779
+E V +L + I L GG + + + LLQ G + +S P A
Sbjct: 116 AIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTA 174
Query: 780 VAYGAAVQAAILHGDKSEEVQ 800
VA GA + + + +++Q
Sbjct: 175 VAKGAGMVLDKV--NILKKLQ 193
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 47.6 bits (112), Expect = 1e-06
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 540 ERNVLIFDLGGGTFDVSILTIEDGIFEGS 568
++ D+GGGT +V+++++ + S
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIVTWES 34
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 105 bits (263), Expect = 6e-27
Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 33/188 (17%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 6 LDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLART----- 58
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
SS A I + I + +
Sbjct: 59 ----------------------KGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMN 96
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEAV 780
+ +E+ + + + + ++++GG + + ++ ++ N +
Sbjct: 97 EALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDL 154
Query: 781 AYGAAVQA 788
G +
Sbjct: 155 VNGMYLIG 162
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 40.6 bits (94), Expect = 2e-04
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 540 ERNVLIFDLGGGTFDVSILTIEDGIFE 566
++LI DLGG T D+S + +
Sbjct: 6 LDSLLIIDLGGTTLDISQ--VMGKLSG 30
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 93.3 bits (232), Expect = 2e-23
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 101 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160
L++++I++MV DAE D K + ++ +N + + + VE+ DK+ ++T
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTA 58
Query: 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPI 197
I + L +K E K +EL + +
Sbjct: 59 IESALTALETALKGE---DKAAIEAKMQELAQVSQKL 92
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 89.4 bits (221), Expect = 2e-21
Identities = 21/182 (11%), Positives = 50/182 (27%), Gaps = 34/182 (18%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
++ D+G T DV + + D V + +G D + + +E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
DL + + + ++ E+L +
Sbjct: 64 DL---AQEALSHPVMFRQKQVGGP--------------------EVSGPILEDLANRIIE 100
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVA 781
+ + + ++ VGG + + + ++ G + + A A
Sbjct: 101 NIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANA 151
Query: 782 YG 783
G
Sbjct: 152 LG 153
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 37.8 bits (87), Expect = 0.001
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 540 ERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFD 584
++ D+G T DV + + D ++ +G G
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSL---QIGVGDAI 46
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 83.8 bits (207), Expect = 6e-20
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 101 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 160
L+ +I M+ D+ Y +D K + + K ++ + + +S AER
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAAD--AALLSAAERQV 58
Query: 161 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 205
I D + + + + + E K ++ + S
Sbjct: 59 IDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 100
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 79.8 bits (196), Expect = 3e-18
Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 17/141 (12%)
Query: 389 VAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEE 448
V + + + +I + + K +
Sbjct: 14 VFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRD--GVIADYT 71
Query: 449 VSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIA 508
V+ ++L A+ + VI VP D +R+A D+G A
Sbjct: 72 VALVMLRYFINKAKGGMNLFKPRVVIG-------------VPIGITDVERRAILDAGLEA 118
Query: 509 GLNVLRIINEPTAAAIAYGLD 529
G + + +I EP AAAI G +
Sbjct: 119 GASKVFLIEEPMAAAI--GSN 137
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 43.0 bits (100), Expect = 4e-05
Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 15/164 (9%)
Query: 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 662
+R V++ +LG + ++G+ +G + + F+ ++
Sbjct: 6 DRGVVVVNLGYNFTGLIA--YKNGVPI---KISYVPVGMKHVIKDVSAVLDTSFEES-ER 59
Query: 663 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 722
+ T+ A+ E R L +T + L I AR E+ +
Sbjct: 60 LIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSV-------IIHARLREI-MSKSK 111
Query: 723 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 766
VE + + +VL GG +IP++ +L + F
Sbjct: 112 KFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 154
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 840 | |||
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.98 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.97 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.94 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.83 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.83 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.74 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.71 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.47 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.37 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.29 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 99.06 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.06 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.02 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.26 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.23 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.03 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 96.91 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 96.79 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 96.62 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 96.6 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 96.52 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 94.7 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 94.57 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 92.01 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 90.74 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 86.35 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 85.0 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 82.37 |
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-33 Score=280.51 Aligned_cols=183 Identities=83% Similarity=1.207 Sum_probs=173.7
Q ss_pred CCCcccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeCCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHH
Q psy7262 335 IPSHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATV 413 (840)
Q Consensus 335 ~~~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~ 413 (840)
.+++||| |||||+||++++|+++++++..|++++||+|+|.++++++|..|..++..+|+++++++|+|||+.+.+...
T Consensus 1 g~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~~~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (185)
T d1bupa1 1 GPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 80 (185)
T ss_dssp CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSSCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHH
T ss_pred CCEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEECCCcEEEeechHHHhhcCcccchhHHHHHhCCCCccHHH
Confidence 3689999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCC
Q psy7262 414 QADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYF 493 (840)
Q Consensus 414 ~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~ 493 (840)
+.....+|+.+..+.+.....+.+.+....++|++|++++|++|++.++..++.+. .++|||||++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~-------------~~~VitvPa~f 147 (185)
T d1bupa1 81 QSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTV-------------TNAVVTVPAYF 147 (185)
T ss_dssp HHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCC-------------CEEEEEECTTC
T ss_pred HHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCc-------------CcEEEEECCCC
Confidence 88889999999988889999999999999999999999999999999999998765 89999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhccc
Q psy7262 494 NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDK 530 (840)
Q Consensus 494 ~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~ 530 (840)
++.||++|++||+.|||+.+.|++||+|||++|++++
T Consensus 148 ~~~qr~~~~~Aa~~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 148 NDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhcccC
Confidence 9999999999999999999999999999999998754
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-32 Score=274.71 Aligned_cols=190 Identities=92% Similarity=1.326 Sum_probs=182.7
Q ss_pred CceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHH
Q psy7262 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK 682 (840)
Q Consensus 603 ~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 682 (840)
+++++|+|+||||+|++++++.++.+++++..++..+||.+||+++++++.+++.++++.+...+++.+.+|+.+||++|
T Consensus 4 e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K 83 (193)
T d1bupa2 4 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAK 83 (193)
T ss_dssp CEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHh
Confidence 57799999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHcCCCCeeEEEEecccCCeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHH
Q psy7262 683 RTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 762 (840)
Q Consensus 683 ~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~ 762 (840)
+.||.+.++.+.++.+..+.+....|+|++|+++++|+++++.++++++|++++..+.+|+.|+||||+|++|+|++.|+
T Consensus 84 ~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~i~ 163 (193)
T d1bupa2 84 RTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQ 163 (193)
T ss_dssp HHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHH
T ss_pred hccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHH
Confidence 99999999999999888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCCcccCCCChhhHHHHHHHHHHHHHc
Q psy7262 763 DFFNGKELNKSINPDEAVAYGAAVQAAILH 792 (840)
Q Consensus 763 ~~f~~~~v~~~~~p~~aVA~GAal~a~~l~ 792 (840)
+.|++.++..+.||++|||+|||++|+.++
T Consensus 164 ~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 164 DFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 999888888889999999999999999875
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.98 E-value=8.2e-32 Score=270.48 Aligned_cols=189 Identities=47% Similarity=0.774 Sum_probs=172.8
Q ss_pred CceEEEEEcCCceeEEEEEEEe----CCeEEEEEeeCCCCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHH
Q psy7262 603 ERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTAC 678 (840)
Q Consensus 603 ~~~v~v~D~Gggt~d~s~~~~~----~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 678 (840)
.++++|||+||||+|++++++. ...+++++..++..+||.+||++|++++.++++++++.+...+++.+.+|+.+|
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~ 81 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAA 81 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Confidence 3568999999999999999987 456899999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHcCCCCeeEEEEecccC----CeeeEEEEehHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCc
Q psy7262 679 ERAKRTLSSSTQASIEIDSLFE----GVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 754 (840)
Q Consensus 679 e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~ 754 (840)
|++|+.||.+.++++.++.+.. +.++.+.|||++|+++++|+++++.++|.++|+++++++.+|+.|+|+||+|++
T Consensus 82 e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~ 161 (198)
T d1dkgd2 82 EKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRM 161 (198)
T ss_dssp HHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGS
T ss_pred HHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCC
Confidence 9999999999999888875443 346789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHc
Q psy7262 755 PKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 792 (840)
Q Consensus 755 p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~ 792 (840)
|+|++.|++.| +.++..+.||++|||+|||++|+.|+
T Consensus 162 p~l~~~i~~~f-~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 162 PMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHH-CCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999 55788889999999999999998764
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.97 E-value=1.1e-31 Score=266.36 Aligned_cols=178 Identities=51% Similarity=0.780 Sum_probs=161.0
Q ss_pred Ccccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEeeC-CcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChHHH
Q psy7262 337 SHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ 414 (840)
Q Consensus 337 ~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~~-~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~~~ 414 (840)
++||| |||||+||++++|.+++++|+.|++++||+++|.+ +.+++|.+|..+..++|+++++++|+|||+.+.++..+
T Consensus 2 VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~~ 81 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQ 81 (183)
T ss_dssp CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHH
T ss_pred EEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHHH
Confidence 68999 99999999999999999999999999999999984 58999999999999999999999999999999999998
Q ss_pred hhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCCCC
Q psy7262 415 ADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAYFN 494 (840)
Q Consensus 415 ~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~~~ 494 (840)
.....+||.+...++ ....+... ++.++|++|++++|++|++.++..++... .++|||||++|+
T Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~--~~~~s~~~l~a~~L~~l~~~a~~~~~~~~-------------~~~VitVPa~f~ 145 (183)
T d1dkgd1 82 RDVSIMPFKIIAADN-GDAWVEVK--GQKMAPPQISAEVLKKMKKTAEDYLGEPV-------------TEAVITVPAYFN 145 (183)
T ss_dssp HHTTTCSSEEEECSS-SBEEEEET--TEEECHHHHHHHHHHHHHHHHHHHHSSCC-------------CEEEECBCTTCC
T ss_pred hhhhcCCEEEEEcCC-CcEEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCC-------------CeEEEEECCCCC
Confidence 888899999875332 23333334 47799999999999999999999998765 899999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEeecchHHHHHHhhccc
Q psy7262 495 DSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDK 530 (840)
Q Consensus 495 ~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y~~~~ 530 (840)
+.||++|++||+.|||+.+.|++||+|||++|++++
T Consensus 146 ~~~r~~l~~Aa~~AG~~~~~li~EP~AAAl~Ygl~k 181 (183)
T d1dkgd1 146 DAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK 181 (183)
T ss_dssp HHHHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCHHHHHHHhcccC
Confidence 999999999999999999999999999999998764
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=1.3e-27 Score=227.62 Aligned_cols=134 Identities=90% Similarity=1.256 Sum_probs=130.5
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||++++..|+|..|+|+.+.|+|||||+..+.+|.+||+|.|+|+||+|+|.++|+|+|++|.||+|+|+
T Consensus 26 ~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip~~~~G~~~I~Vtf~id~nGil~V~ 105 (159)
T d1yuwa1 26 MTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVS 105 (159)
T ss_dssp EEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTTCCEEEE
T ss_pred EEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCCcCCCCCceEEEEEEEcCCCeEEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q psy7262 81 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 134 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE 134 (840)
|.++.+|++..++|....+.|+++|++++++++++++.+|++.+++.++||+||
T Consensus 106 A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 106 AVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp EEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECS
T ss_pred EEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998888889999999999999999999999999999999886
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=8.3e-21 Score=170.88 Aligned_cols=98 Identities=60% Similarity=0.905 Sum_probs=94.4
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|.+|||||++||+++++.|+|..|+|..+.|++||||+..+++|.+||+|.|+++||.|+|.++|+|+|++|.||+|+|+
T Consensus 20 ~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G~~~I~Vtf~iD~nGiL~V~ 99 (118)
T d1dkza2 20 MTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVS 99 (118)
T ss_dssp EEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEECTTCCEEEE
T ss_pred EEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCCCcEEEEEEEecCCCeEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccC
Q psy7262 81 AIEKSTGKENKITITNDR 98 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~ 98 (840)
|.++.+|++..++|....
T Consensus 100 a~d~~tg~~~~~~i~~~~ 117 (118)
T d1dkza2 100 AKDKNSGKEQKITIKASS 117 (118)
T ss_dssp EEETTTCCEEEEEECTTC
T ss_pred EEECCCCCEEEEEEEcCC
Confidence 999999999999887654
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=7.9e-21 Score=170.38 Aligned_cols=98 Identities=45% Similarity=0.724 Sum_probs=94.7
Q ss_pred CcEeecCCCCcCcceEEEEEeccCCCceEEEEeecCCcCCccCCccceeEEEcCCCCCCCCCCeEEEEEEecCCccEEEE
Q psy7262 1 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 80 (840)
Q Consensus 1 ~~~li~rnt~lP~~kt~~f~t~~d~q~~v~i~iyege~~~~~~n~~ig~~~i~gi~~~~~G~~~I~vtf~ld~nGil~V~ 80 (840)
|++|||||++||++++..|+|..|+|..+.|++||||+..+.+|..||+|.|+|+||+|+|.++|+|+|++|.||+|+|+
T Consensus 17 ~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~I~Vtf~id~nGiL~V~ 96 (115)
T d1u00a2 17 VEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVT 96 (115)
T ss_dssp EEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSCEEEEEEECTTCCEEEE
T ss_pred EEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCccccccEEEEEEccCCceEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccceeEeccC
Q psy7262 81 AIEKSTGKENKITITNDR 98 (840)
Q Consensus 81 a~~~~~~~~~~l~i~~~~ 98 (840)
|.++.+|++..+++..+.
T Consensus 97 A~d~~tg~~~~i~i~~~~ 114 (115)
T d1u00a2 97 AMEKSTGVEASIQVKPSY 114 (115)
T ss_dssp EEETTTCCEEEEEECCCS
T ss_pred EEECCCCCEeEEEEeCCC
Confidence 999999999999987754
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=5.9e-19 Score=175.43 Aligned_cols=149 Identities=17% Similarity=0.242 Sum_probs=106.0
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHH-HHcCCCCeeEEEEecccCCeeeEEEEehHHHHH
Q psy7262 637 THLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK-RTLSSSTQASIEIDSLFEGVDFYTSITRARFEE 715 (840)
Q Consensus 637 ~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K-~~Ls~~~~~~i~i~~~~~~~~~~~~itr~e~e~ 715 (840)
...||.+++..+..++...+...... ............++ ..-.......+.......+.+....+++.++++
T Consensus 35 ~~~gg~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (196)
T d1jcea2 35 IRIAGDEMDEAIVQYVRETYRVAIGE------RTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVRE 108 (196)
T ss_dssp ESCSHHHHHHHHHHHHHHHHCEECCH------HHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHH
T ss_pred ecCCCcccccchhhhhhhhhcccccc------hhHHHHHHHHhhhhhhhhccccceeeeeeeccCCCccccccchhhHHH
Confidence 46799999999988887665322111 11111111000000 000111233455555666777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcc---CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHc
Q psy7262 716 LNADLFRGTMEPVEKSLRDAKMDKA---QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 792 (840)
Q Consensus 716 ~~~~~i~~i~~~i~~~l~~a~~~~~---~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~ 792 (840)
.+.+++.++...+.++++.+..... .++.|+||||+|++|+|++.+++.| +.++....||++|||+|||+++..+.
T Consensus 109 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~~~f-g~~v~~~~~P~~aVA~GAai~~~~~~ 187 (196)
T d1jcea2 109 ALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKVN 187 (196)
T ss_dssp HTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHHHHH-CcCCccCCChHHHHHHHHHHHHHCHH
Confidence 9999999999999999998765432 3567999999999999999999999 67888899999999999998875544
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=7.9e-18 Score=157.49 Aligned_cols=131 Identities=25% Similarity=0.269 Sum_probs=95.7
Q ss_pred Ccccc-ccceEEEEEEECCeEEEEEcCCCCcccceEEEee---CCcEEEcHHHHHHHHhCcCchhhhhhHhcCCCCCChH
Q psy7262 337 SHPVS-FITSALQGVFQHGKVEIIANDQGNRTTPSYVAFT---DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDAT 412 (840)
Q Consensus 337 ~~gID-GtT~s~va~~~~g~~~ii~~~~g~~~iPS~V~f~---~~~~~~G~~A~~~~~~~p~~~i~~~K~llg~~~~~~~ 412 (840)
.+||| |||||+|++...|.+ + + .|+.+++. +...++|..|......++.+.. ..|.+.
T Consensus 2 ~iGIDlGTtns~va~~~~~~v--~-~------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~-~~k~~~-------- 63 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKGIV--V-N------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIK-AIRPMR-------- 63 (137)
T ss_dssp EEEEEECSSEEEEEETTTEEE--E-E------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEE-EECCEE--------
T ss_pred eEEEEcChhhEEEEEeCCCEE--e-e------cCCcceEecCCCeEEEEehHHhhhhhhccccce-eEEecc--------
Confidence 47999 999998877544432 2 2 25555554 3455577777655444433321 111111
Q ss_pred HHhhcccCCeeEeecCCcceEEEEEcCcceeeCHHHHHHHHHHHHHHHHHHHhCCccchhhhhhccCCccceEEEeeCCC
Q psy7262 413 VQADMKHWPFEVVSDGGKPKIKVEYKGEAKTFFPEEVSSMVLTKMKETAEAYLGKTVSNAVITAYLGKTVSNAVITVPAY 492 (840)
Q Consensus 413 ~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~vVitVPa~ 492 (840)
.....+.++..+++.+++..++...+... .++|||||++
T Consensus 64 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~VItVPa~ 102 (137)
T d1jcea1 64 ----------------------------DGVIADYTVALVMLRYFINKAKGGMNLFK-------------PRVVIGVPIG 102 (137)
T ss_dssp ----------------------------TTEESSHHHHHHHHHHHHHHHHTSCCSCC-------------CEEEEEECTT
T ss_pred ----------------------------CCccCcHHHHHHHHHHHHHHHHhhcCccc-------------cceEEEeecc
Confidence 13456778999999999988877666544 8999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecchHHHHHHh
Q psy7262 493 FNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAY 526 (840)
Q Consensus 493 ~~~~~r~~l~~Aa~~AG~~~v~~v~Ep~AAAl~y 526 (840)
|++.||+++++||+.|||+.++|++||+|||+..
T Consensus 103 f~~~qR~at~~Aa~~AGl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 103 ITDVERRAILDAGLEAGASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCHHHHHhCC
Confidence 9999999999999999999999999999999864
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=3.2e-14 Score=119.78 Aligned_cols=82 Identities=68% Similarity=1.124 Sum_probs=76.0
Q ss_pred HhhhhhHHHHHHHhhccchhhhccCCHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7262 129 AKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGA 208 (840)
Q Consensus 129 akn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~~~WLd~~~~a~~~~~~~kl~eL~~~~~~i~~r~~~~~~~~ 208 (840)
+.|+||+|||.+|+.|.++++...+++++++.|.+.|+++++||+++.++++++|++|+++|+.++.||+.|+|+..++.
T Consensus 2 ~~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n~~a~~ee~~~k~~eLe~~~~PI~~k~y~~~g~~ 81 (84)
T d1ud0a_ 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGM 81 (84)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCC
T ss_pred chhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 46999999999999999888999999999999999999999999877889999999999999999999999999876665
Q ss_pred CC
Q psy7262 209 PV 210 (840)
Q Consensus 209 ~~ 210 (840)
|+
T Consensus 82 P~ 83 (84)
T d1ud0a_ 82 PG 83 (84)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=6.5e-13 Score=127.18 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCC--CcccCCCChhhHHHHHHHHH
Q psy7262 710 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG--KELNKSINPDEAVAYGAAVQ 787 (840)
Q Consensus 710 r~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~--~~v~~~~~p~~aVA~GAal~ 787 (840)
++.+.+++.+.+..+.+.+.+.+ ....+++.|+|+||+|+ .+++.|++.|+. .++....||+.|+|+|+.++
T Consensus 88 ~~~i~~~i~~~~~~i~~~i~~~~----~~~~~~~~iil~GGGs~--ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~ 161 (163)
T d2zgya2 88 ISIVTEAMNEALRKLEQRVLNTL----NEFSGYTHVMVIGGGAE--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLI 161 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----TTCCCCCEEEEESTTHH--HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----ccccccceEEEECchHH--HHHHHHHHHhCCCCCCeEECCCcHhHHHHHHHHh
Confidence 44555555555555555554444 34567899999999985 599999999953 35778889999999999987
Q ss_pred H
Q psy7262 788 A 788 (840)
Q Consensus 788 a 788 (840)
+
T Consensus 162 g 162 (163)
T d2zgya2 162 G 162 (163)
T ss_dssp H
T ss_pred c
Confidence 6
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.29 E-value=1.9e-12 Score=127.27 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=90.5
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHHHcCC-----CCeeEEEEecccCCeeeEEEEehH
Q psy7262 637 THLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-----STQASIEIDSLFEGVDFYTSITRA 711 (840)
Q Consensus 637 ~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~-----~~~~~i~i~~~~~~~~~~~~itr~ 711 (840)
..+||.++++.|++.+.- -...||+.|+.+.. .....+.+... +......+++.
T Consensus 35 i~~GG~~iT~~Ia~~l~i-------------------~~~~AE~iK~~~g~~~~~~~~~~~i~~~~~--~~~~~~~~~~~ 93 (191)
T d1e4ft2 35 VPVGMKHVIKDVSAVLDT-------------------SFEESERLIITHGNAVYNDLKEEEIQYRGL--DGNTIKTTTAK 93 (191)
T ss_dssp ESCCHHHHHHHHHHHHTC-------------------CHHHHHHHHHHHCCSCCTTCCCCEEEEECT--TSSCEEEEEHH
T ss_pred EeeChHHHHHHHHHHhcc-------------------cHHHHHHHHhhccccccccccchhcccccc--cCCCcccccHH
Confidence 468999999999876631 12468899987642 12223444332 22345678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC------ccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccC-------------
Q psy7262 712 RFEELNADLFRGTMEPVEKSLRDAKMD------KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK------------- 772 (840)
Q Consensus 712 e~e~~~~~~i~~i~~~i~~~l~~a~~~------~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~------------- 772 (840)
.+.+++.+.++++.+.+.+.++..... ...+..|+|+||+|++|.|.+.+++.| +.++..
T Consensus 94 ~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGGgs~l~gl~~~l~~~l-~~~Vri~~~~~~~~~~~~~ 172 (191)
T d1e4ft2 94 KLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVF-KSPVRTGCYANSDRPSIIN 172 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESGGGGSTTHHHHHHHHH-CSCEEECCGGGSSSCCEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecchhhhhhHHHHHHHHH-CCCeEEeCCccccccccCC
Confidence 999999999999998888887754211 112456999999999999999999998 443311
Q ss_pred ----CCChhhHHHHHHHH
Q psy7262 773 ----SINPDEAVAYGAAV 786 (840)
Q Consensus 773 ----~~~p~~aVA~GAal 786 (840)
..+|..|+|.|++|
T Consensus 173 ~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 173 ADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp CHHHHTCGGGHHHHHHHT
T ss_pred cHHhhcCcHHHHHHHHHh
Confidence 13688999999985
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=7.5e-10 Score=95.36 Aligned_cols=94 Identities=23% Similarity=0.386 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHHHHHHHHHHHHHHhhCCcccH
Q psy7262 101 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180 (840)
Q Consensus 101 ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~~~WLd~~~~a~~ 180 (840)
||++||++|+++++.++.+|+.+|++.+++|.+|+|||.++..|. ++...++++++..+...++++.+||+..+ .
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~--e~~~~l~~~~k~~i~~~i~~l~~~l~~~d---~ 75 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVE--EAGDKLPADDKTAIESALTALETALKGED---K 75 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHHHHHHTSSC---H
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcCC---H
Confidence 789999999999999999999999999999999999999999997 47788999999999999999999997543 6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7262 181 EEFEHKQKELEAICNPIIT 199 (840)
Q Consensus 181 ~~~~~kl~eL~~~~~~i~~ 199 (840)
..++.+..+|+..+.++..
T Consensus 76 ~~i~~~~~~L~~~~~~l~e 94 (97)
T d1dkza1 76 AAIEAKMQELAQVSQKLME 94 (97)
T ss_dssp HHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7899999999998888764
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=9.1e-10 Score=97.45 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHhhccchhhhccCCHHHHHHHHHHHHHHHHHHhhCCcccH
Q psy7262 101 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 180 (840)
Q Consensus 101 ls~eei~~~~~~~~~~~~~D~~~~~~~eakn~LE~~iy~~r~~l~~~~~~~~~~~~e~~~l~~~l~e~~~WLd~~~~a~~ 180 (840)
||++||++|++++..++.+|..+|++.+++|.++++||.++..|. .+...++++++..+...+.++..||++++ .
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~--e~~~~L~~~e~~~i~~~i~~l~~~l~~~d---~ 75 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALA--ADAALLSAAERQVIDDAAAHLSEVAQGDD---V 75 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHHHHHTTSSC---H
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHhhCCHHHHHHHHHHHHHHHHHHHCCC---H
Confidence 789999999999999999999999999999999999999999997 46788999999999999999999997553 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q psy7262 181 EEFEHKQKELEAICNPIITKLYQG 204 (840)
Q Consensus 181 ~~~~~kl~eL~~~~~~i~~r~~~~ 204 (840)
..++..+++|+..+.|+..++++.
T Consensus 76 ~~I~~~~~~L~~~~~~~a~~~m~~ 99 (112)
T d1u00a1 76 DAIEQAIKNVDKQTQDFAARRMDQ 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888753
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.02 E-value=2.8e-10 Score=108.29 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcc-cCCCChhhHHHHHHHHHH
Q psy7262 710 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL-NKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 710 r~e~e~~~~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v-~~~~~p~~aVA~GAal~a 788 (840)
++.+.+.+.++++.+...+.+.+.. ....++.|+|+||+|.+ +++.+++.|+...+ ..+.||+.|+|+|.-..|
T Consensus 84 ~~~i~~~~~~~~~~i~~~i~~~~~~---~~~~i~~iil~GGga~l--l~~~l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 84 PEVSGPILEDLANRIIENIRLNLRG---EVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGG---GGGGEEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---ccccccEEEEECCHHHH--HHHHHHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 4556667777777777777666543 33568999999999986 88999999976644 356799999999987665
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.26 E-value=0.001 Score=65.23 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=56.9
Q ss_pred EEEEehHHHH---HHHHHH-----HHHHHHHHHHHHHHcCCC--ccCccEEEEEcCCCCcHHHHHHHHhHc----C---C
Q psy7262 705 YTSITRARFE---ELNADL-----FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFF----N---G 767 (840)
Q Consensus 705 ~~~itr~e~e---~~~~~~-----i~~i~~~i~~~l~~a~~~--~~~Id~V~LvGG~s~~p~v~~~l~~~f----~---~ 767 (840)
.+.+..+.+. -++.|. ...+.++|.+++.....+ ..-...|+|+||+|.+|.+.++|.+.+ + .
T Consensus 101 ~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~ 180 (225)
T d2fxua2 101 VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMK 180 (225)
T ss_dssp EEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCC
T ss_pred EEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccc
Confidence 4566665553 233332 124667777776654322 123468999999999999999998765 2 2
Q ss_pred CcccCCCChhhHHHHHHHHHHH
Q psy7262 768 KELNKSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 768 ~~v~~~~~p~~aVA~GAal~a~ 789 (840)
..+..+.++..++=.||+++|.
T Consensus 181 ~~v~~~~~~~~~aW~Ggsilas 202 (225)
T d2fxua2 181 IKIIAPPERKYSVWIGGSILAS 202 (225)
T ss_dssp CCEECCTTTTSHHHHHHHHHHH
T ss_pred eEEecCCCCCeeEEeCHhhhhc
Confidence 2456666888899999999985
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.23 E-value=0.0013 Score=66.03 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=62.3
Q ss_pred EEEecccCCeeeEEEEehHHHH---HHHHHH------HHHHHHHHHHHHHHcCCCcc--CccEEEEEcCCCCcHHHHHHH
Q psy7262 693 IEIDSLFEGVDFYTSITRARFE---ELNADL------FRGTMEPVEKSLRDAKMDKA--QIHDIVLVGGSTRIPKVQKLL 761 (840)
Q Consensus 693 i~i~~~~~~~~~~~~itr~e~e---~~~~~~------i~~i~~~i~~~l~~a~~~~~--~Id~V~LvGG~s~~p~v~~~l 761 (840)
.............+.+..+.|. -++.|. ...+.+.|.+++........ -...|+|+||+|.+|.+.++|
T Consensus 96 ~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL 175 (258)
T d1k8ka2 96 YTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRL 175 (258)
T ss_dssp EEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHH
T ss_pred cccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHHHhCEEEecCcccCCCHHHHH
Confidence 3343333334556777777764 223221 23477888888877653322 257799999999999999998
Q ss_pred HhHcC-----------------------CCcccCCCChhhHHHHHHHHHHH
Q psy7262 762 QDFFN-----------------------GKELNKSINPDEAVAYGAAVQAA 789 (840)
Q Consensus 762 ~~~f~-----------------------~~~v~~~~~p~~aVA~GAal~a~ 789 (840)
.+.+. ...+..+.++..++=.||+++|.
T Consensus 176 ~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~ 226 (258)
T d1k8ka2 176 QRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 226 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred HHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHc
Confidence 75551 11334455677888999998874
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.03 E-value=0.0028 Score=57.28 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=37.8
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhHcCC-------CcccCCCChhhHHHHHHHHH
Q psy7262 740 AQIHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQ 787 (840)
Q Consensus 740 ~~Id~V~LvGG~s~~p~v~~~l~~~f~~-------~~v~~~~~p~~aVA~GAal~ 787 (840)
.+|..|+|+||++.-.-|-+++.+.+.. -.|.-..-|..|||.|.++.
T Consensus 144 r~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 144 RDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp TTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 5799999999999987777777777622 24555567899999999864
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.91 E-value=0.00014 Score=69.90 Aligned_cols=49 Identities=65% Similarity=0.963 Sum_probs=34.0
Q ss_pred CCceEEEEecCCCceEEEEEeeccCcccCCCCceeEEEecCCCccccceee
Q psy7262 539 GERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLIFDLGGGTFDVSILT 589 (840)
Q Consensus 539 ~~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~~d~Gg~~~d~~~~~ 589 (840)
.+++|||+|+||||+|+|++++.++....-. +.--.++||.++|..+..
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~--~~g~~~lGG~~~D~~l~~ 51 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKS--TAGDTHLGGEDFDNRMVN 51 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEETTEEEEEE--EEEETTCSHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCeEEEEEEEEeCCEEEEEE--ecCCCCcchhHHHHHHHH
Confidence 5778999999999999999999754332100 000124899999976554
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=96.79 E-value=0.0068 Score=54.59 Aligned_cols=59 Identities=31% Similarity=0.354 Sum_probs=44.1
Q ss_pred HHHHHcC--CCccCccEEEEEcCCCCcHHHHHHHHhHcCCC-------cccCCCChhhHHHHHHHHHH
Q psy7262 730 KSLRDAK--MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 730 ~~l~~a~--~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~-------~v~~~~~p~~aVA~GAal~a 788 (840)
++|+... -+..+|..|+|+||++.-.-|-+++.+.+..- .|.-..-|..|||.|.++.-
T Consensus 132 RaL~~vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~y 199 (203)
T d2d0oa3 132 RALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSW 199 (203)
T ss_dssp HHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHH
T ss_pred HHHHhcCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHHh
Confidence 4455443 34458999999999999988889998888432 45555678999999998643
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=96.62 E-value=0.00045 Score=66.57 Aligned_cols=49 Identities=41% Similarity=0.773 Sum_probs=32.6
Q ss_pred CceEEEEecCCCceEEEEEeeccCcccCCCCceeEE----EecCCCccccceeee
Q psy7262 540 ERNVLIFDLGGGTFDVSILTIEDGIFEGSGERNVLI----FDLGGGTFDVSILTI 590 (840)
Q Consensus 540 ~~~vLVvDiGGGTtDis~~~~~~~~~~~~g~~~~~~----~d~Gg~~~d~~~~~~ 590 (840)
+.+|||+|+||||+|+|++++.... ..+.-.++. ..+||.++|..+...
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~--~~~~~~vl~~~~~~~lGG~~~D~~l~~~ 54 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVD--GEKTFEVLATNGDTHLGGEDFDSRLINY 54 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC------CCCEEEEEEEESSCSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccC--CCcEEEEEEecCCCCCCHHHHHHHHHHH
Confidence 4579999999999999999987421 111111222 237999999876543
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=96.60 E-value=0.0016 Score=64.47 Aligned_cols=69 Identities=25% Similarity=0.245 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHH
Q psy7262 718 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 791 (840)
Q Consensus 718 ~~~i~~i~~~i~~~l~~a~~~~~~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l 791 (840)
...+..+...+...+... .+.+.|++.||.++.+++++.+++.+ +.++..+.+|..+.|.|||++|..-
T Consensus 188 ~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l-~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 188 AGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHH-CCCEEcCCCccHHHHHHHHHHHHHH
Confidence 334444444444444332 24567999999999999999999999 7789999999999999999999753
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.52 E-value=0.005 Score=58.41 Aligned_cols=61 Identities=28% Similarity=0.372 Sum_probs=42.7
Q ss_pred EEEEehHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCc--cCccEEEEEcCCCCcHHHHHHHHhHc
Q psy7262 705 YTSITRARFE---ELNADLF-----RGTMEPVEKSLRDAKMDK--AQIHDIVLVGGSTRIPKVQKLLQDFF 765 (840)
Q Consensus 705 ~~~itr~e~e---~~~~~~i-----~~i~~~i~~~l~~a~~~~--~~Id~V~LvGG~s~~p~v~~~l~~~f 765 (840)
.+.+..+.|. -++.|.. ..+.+.|.+++..+..+. .-...|+|+||+|.+|.+.++|+..+
T Consensus 98 ~i~i~~er~~~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIvl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 98 IIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp EEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHH
T ss_pred EEEEChhhccccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEEEECcccCCCCHHHHHHHHH
Confidence 4667777665 2333311 137788888888765442 23577999999999999999998766
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=94.70 E-value=0.014 Score=57.24 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=43.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhHcCCCcccCCCChhhHHHHHHHHHHHHHcC
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 793 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVA~GAal~a~~l~~ 793 (840)
.++.+.+.||+++++.+.+.+.+.+ +.+|..+.+++ +.|+|||++|+.-.+
T Consensus 147 ~~~~i~~~GG~s~s~~~~Qi~Advl-g~~v~~~~~~e-~~alGaA~la~~~~G 197 (235)
T d1r59o2 147 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQRAANLE-TTALGAAYLAGLAVG 197 (235)
T ss_dssp CCSEEEEEESTTSCHHHHHHHHHHH-SSEEEEESCCC-TTTHHHHHHHHHHHT
T ss_pred CCcEEEecCcchhCHHHHhhhhhcc-ceeeeeccccc-hHHHHHHHHHHHHcC
Confidence 4678999999999999999999999 77787765554 789999999987665
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.29 Score=46.49 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=36.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhH----c--CCCcccCCCChhhHHHHHHHHHH
Q psy7262 741 QIHDIVLVGGSTRIPKVQKLLQDF----F--NGKELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 741 ~Id~V~LvGG~s~~p~v~~~l~~~----f--~~~~v~~~~~p~~aVA~GAal~a 788 (840)
.++.|+++||.+..-.+++.+.+. + .+.++..+.+...+.|.||.+.-
T Consensus 157 ~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 157 NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 467899999988777777766542 3 24466778899999999998753
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=90.74 E-value=0.24 Score=47.97 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=39.9
Q ss_pred CccEEEEEcC-CCCcHHHHHHHHhHc--CCCcccCCCChhhHHHHHHHHHH
Q psy7262 741 QIHDIVLVGG-STRIPKVQKLLQDFF--NGKELNKSINPDEAVAYGAAVQA 788 (840)
Q Consensus 741 ~Id~V~LvGG-~s~~p~v~~~l~~~f--~~~~v~~~~~p~~aVA~GAal~a 788 (840)
++..|++.|| .+..|++++.+++.+ .+.++..+.+++.+-|.||++++
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 3467899998 577999999999887 45577788899999999999865
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=86.35 E-value=0.15 Score=47.27 Aligned_cols=38 Identities=16% Similarity=0.349 Sum_probs=25.9
Q ss_pred CceEEEEEcCCceeEEEEEEEeCCeEEEEEeeCCCCCc
Q psy7262 603 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 640 (840)
Q Consensus 603 ~~~v~v~D~Gggt~d~s~~~~~~~~~~~~~~~~~~~lG 640 (840)
++.++|||+||||||+|+++..+..+......+...+.
T Consensus 6 ~~gvlV~DiGGGT~Dvsi~~~g~~~~~~~~~~gg~~~~ 43 (196)
T d1jcea2 6 PSGNMVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMD 43 (196)
T ss_dssp SSCEEEEEECSSCEEEEEEETTEEEEEEEESCSHHHHH
T ss_pred CCceEEEEcCCCcEEEEEEEcCCEeEEeeecCCCcccc
Confidence 44589999999999999988665555544444433333
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.00 E-value=1.2 Score=39.85 Aligned_cols=47 Identities=17% Similarity=0.034 Sum_probs=40.2
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCcEEEeecchHHHHHHhhcc
Q psy7262 483 SNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLD 529 (840)
Q Consensus 483 ~~vVitVPa~~~~~~r~~l~~Aa-~~AG~~~v~~v~Ep~AAAl~y~~~ 529 (840)
..+++|-|...+..+|+.|.+.+ +..+++.+.+...|..++++++..
T Consensus 106 ~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~ 153 (158)
T d1k8ka1 106 HYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTS 153 (158)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGS
T ss_pred CceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCC
Confidence 67999999999999999877655 778999999999999998877543
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=82.37 E-value=0.31 Score=44.92 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.8
Q ss_pred CceEEEEecCCCceEEEEEe
Q psy7262 540 ERNVLIFDLGGGTFDVSILT 559 (840)
Q Consensus 540 ~~~vLVvDiGGGTtDis~~~ 559 (840)
+...||+|+|||+|.+++++
T Consensus 2 e~~~lviDIGGGStEli~~~ 21 (180)
T d1t6ca2 2 EGEVCVVDQGGGSTEYVFGK 21 (180)
T ss_dssp CSEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEeCCChHhhEEee
Confidence 45789999999999999885
|