Psyllid ID: psy7266
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
No hits with e-value below 0.001 by BLAST
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1175 | ||||||
| FB|FBgn0034401 | 1022 | CG15100 [Drosophila melanogast | 0.761 | 0.875 | 0.473 | 3.5e-235 | |
| MGI|MGI:1345633 | 902 | Mars "methionine-tRNA syntheta | 0.597 | 0.778 | 0.501 | 2.3e-204 | |
| UNIPROTKB|P56192 | 900 | MARS "Methionine--tRNA ligase, | 0.582 | 0.761 | 0.508 | 1.5e-202 | |
| RGD|1305321 | 902 | Mars "methionyl-tRNA synthetas | 0.594 | 0.773 | 0.497 | 8e-202 | |
| UNIPROTKB|F1MDW1 | 898 | MARS "Methionine--tRNA ligase, | 0.589 | 0.771 | 0.498 | 1.7e-201 | |
| UNIPROTKB|Q2T9L8 | 898 | MARS "Methionine--tRNA ligase, | 0.589 | 0.771 | 0.498 | 7.1e-201 | |
| UNIPROTKB|E2QZ06 | 900 | MARS "Uncharacterized protein" | 0.589 | 0.77 | 0.5 | 1.9e-200 | |
| UNIPROTKB|F6XD28 | 898 | MARS "Uncharacterized protein" | 0.589 | 0.771 | 0.5 | 1.9e-200 | |
| UNIPROTKB|I3LCC2 | 893 | LOC100516610 "Uncharacterized | 0.568 | 0.748 | 0.492 | 1.1e-185 | |
| UNIPROTKB|A6NC17 | 635 | MARS "Methionine--tRNA ligase, | 0.481 | 0.891 | 0.554 | 7.2e-178 |
| FB|FBgn0034401 CG15100 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2069 (733.4 bits), Expect = 3.5e-235, Sum P(2) = 3.5e-235
Identities = 455/961 (47%), Positives = 603/961 (62%)
Query: 5 SNRNNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLY 64
+N N L+LL+ A+F+ + V+LV++ DA+ +P LELD+G +LFS Y
Sbjct: 5 TNDGNPLGLQLLMLAKFAKQPVQVQLVNLNDAKYKDLLVLPTLELDNGLRLFSPAAIAKY 64
Query: 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAISNS----- 119
L F K + ++WLEW + L P++ N LN L + + +
Sbjct: 65 L--FVGKGQQR-DEWLEWSATLLAPALAHHMAVGHKADANALPVLNALVKKLDDKLKATP 121
Query: 120 FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTWTEV 179
+L + + ADI IW+ + P D ++ + N+ WY R+ LP+VQ+ L +
Sbjct: 122 YLAGDKPSAADIAIWSLLAP---DGTLKGA-QNVDNLRDWYGRVKALPEVQEVLAE--QP 175
Query: 180 LKGSANDVGSLSEALFSLSIASQSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDD 239
LK LS F+ A Q N L+ + PL K+ S A + ++ D
Sbjct: 176 LK-------DLS---FN---ALQQSNRY-GGLHHV-PL-KRL------SLADASKLLVDT 213
Query: 240 LSSKSKDVTSEEIEQTKVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLG 299
+ + VT+EEI K A+T +P ++ VLP+P E N+LITSALPYVNNVPHLG
Sbjct: 214 TPTVADTVTNEEISAAKAAFTYTAPKEIKEERT-VLPKPGERNVLITSALPYVNNVPHLG 272
Query: 300 NIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359
NIIGCVLSAD+++R+ R NTL + GTDEYGTATE KAL E LTPR+ICDKYF +H
Sbjct: 273 NIIGCVLSADIYARYSRSAGYNTLLICGTDEYGTATENKALAENLTPREICDKYFELHNA 332
Query: 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE 419
+Y WF I FDYFGRT+T +QT+IVQ F V KAG+ + SVEQL C +CDRFLADRFVE
Sbjct: 333 IYRWFGIGFDYFGRTTTQEQTDIVQEAFKDVLKAGYIITESVEQLLCQKCDRFLADRFVE 392
Query: 420 GVCPK--CRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDK 477
G CP C YEDARGDQCD CG+L+NA ELI+PRCK C+ AP ++SS QLF++LPK E +
Sbjct: 393 GTCPHPGCGYEDARGDQCDKCGKLVNATELIRPRCKVCNSAPVLRSSDQLFIDLPKAEPQ 452
Query: 478 LQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENK--YSLSSSP 535
L+ WV ++ W+ NA+VI +AWLK+GLKPRCITRDLKWGIPVP GFE K Y +P
Sbjct: 453 LKEWVDKSEGGWTHNAKVITRAWLKEGLKPRCITRDLKWGIPVPHEGFEKKVFYVWFDAP 512
Query: 536 -SLVQFLPTATPQ----------SKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNH 584
V T + + + L+QFMAKDNVPFHS+++P+ L+A +T V+H
Sbjct: 513 FGYVSMTKRYTKEYQQWWQPAKGTDVELFQFMAKDNVPFHSVVWPSVLLAINKGHTLVSH 572
Query: 585 IMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLAT 644
IMATEYLNYEDGKFSKSRG GVFGN+A++TG+PAD++RFYL RPE QD+SFSW DLA
Sbjct: 573 IMATEYLNYEDGKFSKSRGIGVFGNDAQETGIPADVWRFYLASARPEGQDSSFSWNDLAA 632
Query: 645 KNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAK 704
+NNSELLNNLGNF+NRAL F EKN+ ST+P + ++ +LLALINREL Y + ++KAK
Sbjct: 633 RNNSELLNNLGNFVNRALVFCEKNFSSTVPGVITTQDELVLLALINRELRGYINSMEKAK 692
Query: 705 LRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVXXXXXXXXXXXX 764
LRDG+R++L ISR+ N YMQ+QQPWVL KG+ +QK+RAST++G+ +
Sbjct: 693 LRDGVRHLLAISRHGNGYMQSQQPWVLLKGTDDQKTRASTIIGLCVNIACLLANLLFPYM 752
Query: 765 XXTASTIASQLGAXXXXXXXXXXXXXXXXXPTGHKIGTPAPLFRKIEQAQVDEWKLKYGG 824
TA T+ QL A P GH+IG PAPLF K+EQ+ +DE K KYGG
Sbjct: 753 PTTARTLFGQLNAKQTPLNAEKPLVTLLL-PAGHQIGKPAPLFAKLEQSFIDELKGKYGG 811
Query: 825 XXXXXXXXXXXXXXXAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSL 884
++I S +LE AV Q + VR++K+S +K+ WQP V KLL L
Sbjct: 812 AQATNDAAH------SQI---SAADLEKAVQAQADKVRELKASTKDKAIWQPEVTKLLDL 862
Query: 885 KKQLEAMKSQQRAATDANQTSATPSASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSV 944
KKQLE K ++ AT A +ATP+ S+ S V+ LE I++Q + VR LK S DK+V
Sbjct: 863 KKQLEEAK--KKTATAA-APAATPAPSNGSQSVQDLEKAIQEQGDKVRKLKGSTK-DKTV 918
Query: 945 F 945
+
Sbjct: 919 W 919
|
|
| MGI|MGI:1345633 Mars "methionine-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1794 (636.6 bits), Expect = 2.3e-204, Sum P(3) = 2.3e-204
Identities = 362/722 (50%), Positives = 463/722 (64%)
Query: 186 DVGSLSEALFSLSI---ASQSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDDLSS 242
++G+L +LS ++ TVL LA + QP+ V ++L
Sbjct: 165 ELGALQSWFQTLSTQEPCQRAAETVLKQQGVLALRLYLQKQPQPQPPPPEGRTVSNELEE 224
Query: 243 KSKDVTSEEIEQTKVA-WTQG--SPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLG 299
+ SEE T VA W +G S PL+ + PVLP P E N+LITSALPYVNNVPHLG
Sbjct: 225 EELATLSEEDIVTAVAAWEKGLESLPPLKLQQHPVLPVPGERNVLITSALPYVNNVPHLG 284
Query: 300 NIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359
NIIGCVLSADVF+R+CRL NTLY+ GTDEYGTATETKA+EEGLTPR+ICDKY AIH +
Sbjct: 285 NIIGCVLSADVFARYCRLRQWNTLYLCGTDEYGTATETKAMEEGLTPREICDKYHAIHAD 344
Query: 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE 419
+Y WF I FD FGRT+TPQQT+I Q +F R+ GF +VEQL C +C RFLADRFVE
Sbjct: 345 IYRWFGISFDTFGRTTTPQQTKITQDIFQRLLTRGFVLRDTVEQLRCERCARFLADRFVE 404
Query: 420 GVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQ 479
GVCP C YE+ARGDQCD CG+LINAIEL +P+CK C P V+SS LFL+LPK+E +L+
Sbjct: 405 GVCPFCGYEEARGDQCDRCGKLINAIELKKPQCKICRSCPVVRSSQHLFLDLPKLEKRLE 464
Query: 480 SWVSET--SDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENK--YS-LSSS 534
W+ +T W+ NAR I ++WL+DGLKPRCITRDLKWG PVPL GFE+K Y ++
Sbjct: 465 DWLGKTVPGSDWTPNARFIIRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDAT 524
Query: 535 PSLVQFLPTATPQ--------SKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIM 586
V T Q ++ LYQFMAKDNVPFH ++FP +++ A D YT V HI+
Sbjct: 525 IGYVSITANYTDQWEKWWKNPEQVDLYQFMAKDNVPFHGLVFPCSVLGAEDNYTLVKHII 584
Query: 587 ATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKN 646
ATEYLNYEDGKFSKSRG GVFG+ AKDTG+PADI+RFYLLY+RPE QD++FSW DL KN
Sbjct: 585 ATEYLNYEDGKFSKSRGIGVFGDMAKDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLIKN 644
Query: 647 NSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLR 706
NSELLNNLGNFINRA F+ K +G +PE++ +D L+A ++ EL Y+ +L+K ++R
Sbjct: 645 NSELLNNLGNFINRAGMFVSKFFGGCVPEMALTPDDRRLVAHVSWELQHYHQLLEKVRIR 704
Query: 707 DGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVXXXXXXXXXXXXXX 766
D +R IL ISR+ NQY+Q +PW KG + RA TV G+ +
Sbjct: 705 DALRSILTISRHGNQYIQVNEPWKRIKGGEMDRQRAGTVTGMAVNMAALLSVMLQPYMPT 764
Query: 767 TASTIASQLGAXXXXXXXXXXXXXXXXXPTGHKIGTPAPLFRKIEQAQVDEWKLKYGGXX 826
+STI +QL P GH+IGT +PLF+K+E Q++ + ++GG
Sbjct: 765 VSSTIQTQL-QLPPAACRILATSFICTLPAGHRIGTVSPLFQKLENDQIENLRQRFGGGQ 823
Query: 827 XXXXXXXXXXXXXAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKK 886
++ L V QGN+VR++K+ +K++ V KLL LKK
Sbjct: 824 AKGSPKPAAVEAVTAAGSQHIQTLTDEVTKQGNVVRELKAQKADKNQVAAEVAKLLDLKK 883
Query: 887 QL 888
QL
Sbjct: 884 QL 885
|
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| UNIPROTKB|P56192 MARS "Methionine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1775 (629.9 bits), Expect = 1.5e-202, Sum P(3) = 1.5e-202
Identities = 357/702 (50%), Positives = 454/702 (64%)
Query: 202 QSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDDLSSKSKDVTSEEIEQTKVAWTQ 261
++ TVL LA L KQ S A+ AV + + ++ EEI AW +
Sbjct: 184 RAAETVLKQQGVLA-LRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAWEK 242
Query: 262 G--SPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVN 319
G S PLR + PVLP E N+LITSALPYVNNVPHLGNIIGCVLSADVF+R+ RL
Sbjct: 243 GLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQ 302
Query: 320 RNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQ 379
NTLY+ GTDEYGTATETKALEEGLTP++ICDKY IH ++Y WF I FD FGRT+TPQQ
Sbjct: 303 WNTLYLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQ 362
Query: 380 TEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439
T+I Q +F ++ K GF +VEQL C C RFLADRFVEGVCP C YE+ARGDQCD CG
Sbjct: 363 TKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDKCG 422
Query: 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSET--SDQWSSNARVIC 497
+LINA+EL +P+CK C P V+SS LFL+LPK+E +L+ W+ T W+ NA+ I
Sbjct: 423 KLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQFIT 482
Query: 498 KAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLP-TA--TPQ------- 547
++WL+DGLKPRCITRDLKWG PVPL GFE+K + + +L TA T Q
Sbjct: 483 RSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKN 542
Query: 548 -SKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGV 606
++ LYQFMAKDNVPFHS++FP + + A D YT V+H++ATEYLNYEDGKFSKSRG GV
Sbjct: 543 PEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGV 602
Query: 607 FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIE 666
FG+ A+DTG+PADI+RFYLLY+RPE QD++FSW DL KNNSELLNNLGNFINRA F+
Sbjct: 603 FGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMFVS 662
Query: 667 KNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQ 726
K +G +PE+ +D LLA + EL Y+ +L+K ++RD +R IL ISR+ NQY+Q
Sbjct: 663 KFFGGYVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVN 722
Query: 727 QPWVLFKGSPEQKSRASTVLGILCQVXXXXXXXXXXXXXXTASTIASQLGAXXXXXXXXX 786
+PW KGS + RA TV G+ + ++TI +QL
Sbjct: 723 EPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQL-QLPPPACSIL 781
Query: 787 XXXXXXXXPTGHKIGTPAPLFRKIEQAQVDEWKLKYGGXXXXXXXXXXXXXXXAEITFSS 846
P GH+IGT +PLF+K+E Q++ + ++GG
Sbjct: 782 LTNFLCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQQ 841
Query: 847 VEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL 888
++ L V QGN+VR++K+ +K+E V KLL LKKQL
Sbjct: 842 IQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQL 883
|
|
| RGD|1305321 Mars "methionyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1768 (627.4 bits), Expect = 8.0e-202, Sum P(3) = 8.0e-202
Identities = 361/726 (49%), Positives = 468/726 (64%)
Query: 186 DVGSLSEALFSLSI---ASQSGNTVLNSLNKLA--PLCKKSNKQQP---ESKAKPAAVVE 237
++G+L +LS ++ TVL LA P +K + QP E +A E
Sbjct: 165 ELGALQSWFQTLSTQEPCQRAAETVLKQQGVLALRPYLQKQPQPQPLPPEGRAVSNEPEE 224
Query: 238 DDLSSKSKDVTSEEIEQTKVAWTQG--SPVPLRTRTAPVLPQPNENNILITSALPYVNNV 295
++L++ S+ E+I AW +G + PL+ + PVLP P E N+LITSALPYVNNV
Sbjct: 225 EELATLSE----EDIIAAVAAWEKGLENLPPLQPQQHPVLPVPGERNVLITSALPYVNNV 280
Query: 296 PHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFA 355
PHLGNIIGCVLSADVF+R+ RL NTLY+ GTDEYGTATETKA+EEGLTP++ICDKY A
Sbjct: 281 PHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETKAMEEGLTPQEICDKYHA 340
Query: 356 IHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD 415
IH ++Y WF I FD FGRT+TP QT+I Q +F R+ GF +VEQL C QC RFLAD
Sbjct: 341 IHVDIYRWFNISFDTFGRTTTPLQTKITQDIFQRLLTRGFVLQDTVEQLRCEQCARFLAD 400
Query: 416 RFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIE 475
RFVEGVCP C YE+ARGDQCD CG+LINAIEL +P+CK C P VKSS LFL+LPK+E
Sbjct: 401 RFVEGVCPFCGYEEARGDQCDKCGKLINAIELKRPQCKVCRSHPVVKSSKHLFLDLPKLE 460
Query: 476 DKLQSWVSET--SDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSS 533
+L+ W+ +T W+ NAR I ++WL+DGLKPRCITRDLKWG PVPL GFE+K
Sbjct: 461 KRLEDWLGKTMPGSDWTPNARFIIRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVW 520
Query: 534 SPSLVQFLP-TA--TPQ--------SKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKV 582
+ + +L TA T Q ++ LYQFMAKDNVPFH ++FP + + A D YT V
Sbjct: 521 FDATIGYLSITANYTDQWERWWKNPEQVDLYQFMAKDNVPFHGLVFPCSALGAEDNYTLV 580
Query: 583 NHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDL 642
+++ATEYLNYEDGKFSKSRG GVFG+ A+DTG+PADI+RFYLLY+RPE QD++FSW DL
Sbjct: 581 KNLIATEYLNYEDGKFSKSRGIGVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDL 640
Query: 643 ATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDK 702
KNNSELLNNLGNFINRA F+ K +G +PE+ H+D L+A ++ EL Y+ +L+K
Sbjct: 641 LIKNNSELLNNLGNFINRAGMFVSKFFGGCVPEMVLTHDDRRLVAHVSWELQRYHQLLEK 700
Query: 703 AKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVXXXXXXXXXX 762
++RD +R IL ISR+ NQY+Q +PW KG + RA TV G+ +
Sbjct: 701 VRIRDALRSILTISRHGNQYIQVNEPWKRIKGDEMDRQRAGTVTGMAVNIAALLSVMLQP 760
Query: 763 XXXXTASTIASQLGAXXXXXXXXXXXXXXXXXPTGHKIGTPAPLFRKIEQAQVDEWKLKY 822
+STI +QL P GH+IGT +PLF+K+E Q++ + ++
Sbjct: 761 YMPTVSSTIQTQL-QLPEAACRILATSFICTLPAGHRIGTVSPLFQKLENDQIENLRQRF 819
Query: 823 GGXXXXXXXXXXXXXXXAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLL 882
GG ++ L V QGN+VR++K+ +K++ V KLL
Sbjct: 820 GGGQAKGSPKPAVVEAVTTAGSQDIQVLVDEVTKQGNIVRELKAQKADKNQVAAEVAKLL 879
Query: 883 SLKKQL 888
LKKQL
Sbjct: 880 DLKKQL 885
|
|
| UNIPROTKB|F1MDW1 MARS "Methionine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1753 (622.1 bits), Expect = 1.7e-201, Sum P(3) = 1.7e-201
Identities = 355/712 (49%), Positives = 454/712 (63%)
Query: 192 EALFSLSIASQSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDDLSSKSKDVTSEE 251
+ L S ++ TVL LA L KQ S + V + + ++ EE
Sbjct: 174 QTLSSQEPCQRAAETVLKQQGVLA-LRPYLQKQPQPSSLEGRLVSNEPEEEELATLSEEE 232
Query: 252 IEQTKVAWTQG--SPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSAD 309
I AW +G S PLR + PVLP E N+LITSALPYVNNVPHLGNIIGCVLSAD
Sbjct: 233 IAVAVAAWEKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSAD 292
Query: 310 VFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFD 369
VF+R+ RL NTLY+ GTDEYGTATETKA+EEGLTP++ICDKY IH ++Y WF I FD
Sbjct: 293 VFARYSRLRQWNTLYLCGTDEYGTATETKAMEEGLTPQEICDKYHVIHADIYRWFNISFD 352
Query: 370 YFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYED 429
+FGRT+TPQQT+I Q +F R+ GF +VEQL C C RFLADRFVEGVCP C YE+
Sbjct: 353 FFGRTTTPQQTKITQDIFQRLLARGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEE 412
Query: 430 ARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSET--SD 487
ARGDQCD CG+LINAIEL +P+CK C P VKSS LFL+LPK+ +++ W+ +T
Sbjct: 413 ARGDQCDKCGKLINAIELKKPQCKVCRSCPVVKSSQHLFLDLPKLAARVEEWLEKTLPGS 472
Query: 488 QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLP-TA-- 544
W++NAR I ++WL+DGLKPRCITRDLKWG PVPL GFE+K + + +L TA
Sbjct: 473 DWTANARFIIRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANY 532
Query: 545 TPQ--------SKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDG 596
T Q ++ LYQFMAKDNVPFH I+FP++ + A D YT V+H++ATEYLNYEDG
Sbjct: 533 TDQWEKWWKNPEQVNLYQFMAKDNVPFHGIVFPSSALGAEDNYTLVSHLIATEYLNYEDG 592
Query: 597 KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGN 656
KFSKSRG GVFG+ A+DTG+PADI+RFYLLY+RPE QD++FSW D+ KNNSELLNNLGN
Sbjct: 593 KFSKSRGVGVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDMLFKNNSELLNNLGN 652
Query: 657 FINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNIS 716
FINRA F+ K +G +PE+ +D LL I EL Y+ +L+K ++RD +R IL IS
Sbjct: 653 FINRAGMFVSKFFGGFVPEMVLTSDDQRLLTHITLELQHYHQLLEKVRIRDALRSILTIS 712
Query: 717 RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVXXXXXXXXXXXXXXTASTIASQLG 776
R+ NQY+Q +PW KG + RA TV G+ + ++TI +QL
Sbjct: 713 RHGNQYIQVNEPWKRIKGGEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQL- 771
Query: 777 AXXXXXXXXXXXXXXXXXPTGHKIGTPAPLFRKIEQAQVDEWKLKYGGXXXXXXXXXXXX 836
P GH+IGT +PLF+K+E Q++ K ++ G
Sbjct: 772 QLPPPACSILPTNFLCTLPAGHQIGTVSPLFQKLENDQIESLKQRFSGGQAKASPKTAAG 831
Query: 837 XXXAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL 888
A ++ L V QGN+VR++K+ +K++ V KLL LKKQL
Sbjct: 832 LTTAGP--QQIQALTEEVTKQGNIVRELKAQKADKNQIAAEVAKLLDLKKQL 881
|
|
| UNIPROTKB|Q2T9L8 MARS "Methionine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1747 (620.0 bits), Expect = 7.1e-201, Sum P(3) = 7.1e-201
Identities = 355/712 (49%), Positives = 453/712 (63%)
Query: 192 EALFSLSIASQSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDDLSSKSKDVTSEE 251
+ L S ++ TVL LA L KQ S + V + + ++ EE
Sbjct: 174 QTLSSQEPCQRAAETVLKQQGVLA-LRPYLQKQPQPSSLEGRLVSNEPEEEELATLSEEE 232
Query: 252 IEQTKVAWTQG--SPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSAD 309
I AW +G S PLR + PVLP E N+LITSALPYVNNVPHLGNIIGCVLSAD
Sbjct: 233 IAVAVAAWEKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSAD 292
Query: 310 VFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFD 369
VF+R+ RL NTLY+ GTDEYGTATETKA+EEGLTP++ICDKY IH ++Y WF I FD
Sbjct: 293 VFARYSRLRQWNTLYLCGTDEYGTATETKAMEEGLTPQEICDKYHVIHADIYRWFNISFD 352
Query: 370 YFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYED 429
+FGRT+TPQQT+I Q +F R+ GF +VEQL C C RFLADRFVEGVCP C YE+
Sbjct: 353 FFGRTTTPQQTKITQDIFQRLLARGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEE 412
Query: 430 ARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSET--SD 487
ARGDQCD CG+LINAIEL +P+CK C P VKSS LFL+LPK+ +++ W+ +T
Sbjct: 413 ARGDQCDKCGKLINAIELKKPQCKVCRSCPVVKSSQHLFLDLPKLAARVEEWLEKTLPGS 472
Query: 488 QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLP-TA-- 544
W++NAR I ++WL+DGLKPRCITRDLKWG PVPL GFE+K + + +L TA
Sbjct: 473 DWTANARFIIRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANY 532
Query: 545 TPQ--------SKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDG 596
T Q ++ LYQFMAKDNVPFH I+FP++ + A D YT V+H++ATEYLNYEDG
Sbjct: 533 TDQWEKWWKNPEQVNLYQFMAKDNVPFHGIVFPSSALGAEDNYTLVSHLIATEYLNYEDG 592
Query: 597 KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGN 656
KFSKSRG GVFG+ A+DTG+PADI+RFYLLY RPE QD++FSW D+ KNNSELLNNLGN
Sbjct: 593 KFSKSRGVGVFGDMAQDTGIPADIWRFYLLYNRPEGQDSAFSWTDMLFKNNSELLNNLGN 652
Query: 657 FINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNIS 716
FINRA F+ K +G +PE+ +D LL I EL Y+ +L+K ++RD +R IL IS
Sbjct: 653 FINRAGMFVSKFFGGFVPEMVLTSDDQRLLTHITLELQHYHQLLEKVRIRDALRSILTIS 712
Query: 717 RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVXXXXXXXXXXXXXXTASTIASQLG 776
R+ NQY+Q +PW KG + RA TV G+ + ++TI +QL
Sbjct: 713 RHGNQYIQVNEPWKRIKGGEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQL- 771
Query: 777 AXXXXXXXXXXXXXXXXXPTGHKIGTPAPLFRKIEQAQVDEWKLKYGGXXXXXXXXXXXX 836
P GH+IGT +PLF+K+E Q++ K ++ G
Sbjct: 772 QLPPPACSILPTNFLCTLPAGHQIGTVSPLFQKLENDQIESLKQRFSGGQAKASPKTAAG 831
Query: 837 XXXAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL 888
A ++ L V QGN+VR++K+ +K++ V KLL LKKQL
Sbjct: 832 LTTAGP--QQIQALTEEVTKQGNIVRELKAQKADKNQIAAEVAKLLDLKKQL 881
|
|
| UNIPROTKB|E2QZ06 MARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1760 (624.6 bits), Expect = 1.9e-200, Sum P(3) = 1.9e-200
Identities = 356/712 (50%), Positives = 456/712 (64%)
Query: 192 EALFSLSIASQSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDDLSSKSKDVTSEE 251
+ L S ++ TVL LA L KQ + AV + + ++ EE
Sbjct: 176 QTLSSQEPCQRAAETVLKQQGVLA-LRPYLQKQPQPGSFEGRAVSNEPEEEELATLSEEE 234
Query: 252 IEQTKVAWTQG--SPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSAD 309
I AW +G S PLR + PVLP E N+LITSALPYVNNVPHLGNIIGCVLSAD
Sbjct: 235 IAMAVTAWEKGLGSLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSAD 294
Query: 310 VFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFD 369
VF+R+ RL NT Y+ GTDEYGTATETKA+EEGLTP++ICDKY AIH ++Y WF I FD
Sbjct: 295 VFARYSRLRQWNTFYLCGTDEYGTATETKAMEEGLTPQEICDKYHAIHADIYRWFNISFD 354
Query: 370 YFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYED 429
FGRT+TPQQT+I Q +F R+ GF +VEQL C +C RFLADRFVEGVCP C YE+
Sbjct: 355 IFGRTTTPQQTKITQDIFQRLLTRGFVLQDTVEQLRCERCARFLADRFVEGVCPFCGYEE 414
Query: 430 ARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSET--SD 487
ARGDQCD CG+LINAIEL +P+CK C P VKSS LFL+LPK+E +L+ W+ +T
Sbjct: 415 ARGDQCDKCGKLINAIELKKPQCKVCRSCPVVKSSQHLFLDLPKLEKRLEEWLGKTLPGS 474
Query: 488 QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLP-TA-- 544
W+ NAR I ++WL+DGLKPRCITRDLKWG PVPL GFE+K + + +L TA
Sbjct: 475 DWTPNARFIIRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANY 534
Query: 545 TPQ--------SKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDG 596
T Q ++ LYQFMAKDNVPFH ++FP + + A D YT V+H++ATEYLNYEDG
Sbjct: 535 TDQWERWWKNPEQVNLYQFMAKDNVPFHGLVFPCSALGAEDNYTLVSHLIATEYLNYEDG 594
Query: 597 KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGN 656
KFSKSRG GVFG+ A+DTG+PADI+RFYLLY+RPE QD++FSW D+ KNNSELLNNLGN
Sbjct: 595 KFSKSRGVGVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDMLLKNNSELLNNLGN 654
Query: 657 FINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNIS 716
FINRA F+ K +G +PE+ +D LLA + EL Y+ +L+K ++R+ +R IL IS
Sbjct: 655 FINRAGMFVSKFFGGYVPEMVLTSDDRRLLAHVTLELQHYHQLLEKVRIREALRSILTIS 714
Query: 717 RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVXXXXXXXXXXXXXXTASTIASQLG 776
R+ NQY+Q +PW KGS + RA TV G+ + ++TI +QL
Sbjct: 715 RHGNQYIQVNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQ 774
Query: 777 AXXXXXXXXXXXXXXXXXPTGHKIGTPAPLFRKIEQAQVDEWKLKYGGXXXXXXXXXXXX 836
P GH+IGT +PLF+K+E Q++ + ++GG
Sbjct: 775 VPPPACSILLTNFLCTL-PAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTPPTPAEA 833
Query: 837 XXXAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL 888
A ++ L V QGN+VR++K+ +K++ V KLL LKKQL
Sbjct: 834 MAAAAP--QQIQVLMDEVTKQGNIVRELKAQKADKNQVAAEVAKLLDLKKQL 883
|
|
| UNIPROTKB|F6XD28 MARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1760 (624.6 bits), Expect = 1.9e-200, Sum P(3) = 1.9e-200
Identities = 356/712 (50%), Positives = 456/712 (64%)
Query: 192 EALFSLSIASQSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDDLSSKSKDVTSEE 251
+ L S ++ TVL LA L KQ + AV + + ++ EE
Sbjct: 174 QTLSSQEPCQRAAETVLKQQGVLA-LRPYLQKQPQPGSFEGRAVSNEPEEEELATLSEEE 232
Query: 252 IEQTKVAWTQG--SPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSAD 309
I AW +G S PLR + PVLP E N+LITSALPYVNNVPHLGNIIGCVLSAD
Sbjct: 233 IAMAVTAWEKGLGSLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSAD 292
Query: 310 VFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFD 369
VF+R+ RL NT Y+ GTDEYGTATETKA+EEGLTP++ICDKY AIH ++Y WF I FD
Sbjct: 293 VFARYSRLRQWNTFYLCGTDEYGTATETKAMEEGLTPQEICDKYHAIHADIYRWFNISFD 352
Query: 370 YFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYED 429
FGRT+TPQQT+I Q +F R+ GF +VEQL C +C RFLADRFVEGVCP C YE+
Sbjct: 353 IFGRTTTPQQTKITQDIFQRLLTRGFVLQDTVEQLRCERCARFLADRFVEGVCPFCGYEE 412
Query: 430 ARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSET--SD 487
ARGDQCD CG+LINAIEL +P+CK C P VKSS LFL+LPK+E +L+ W+ +T
Sbjct: 413 ARGDQCDKCGKLINAIELKKPQCKVCRSCPVVKSSQHLFLDLPKLEKRLEEWLGKTLPGS 472
Query: 488 QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLP-TA-- 544
W+ NAR I ++WL+DGLKPRCITRDLKWG PVPL GFE+K + + +L TA
Sbjct: 473 DWTPNARFIIRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANY 532
Query: 545 TPQ--------SKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDG 596
T Q ++ LYQFMAKDNVPFH ++FP + + A D YT V+H++ATEYLNYEDG
Sbjct: 533 TDQWERWWKNPEQVNLYQFMAKDNVPFHGLVFPCSALGAEDNYTLVSHLIATEYLNYEDG 592
Query: 597 KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGN 656
KFSKSRG GVFG+ A+DTG+PADI+RFYLLY+RPE QD++FSW D+ KNNSELLNNLGN
Sbjct: 593 KFSKSRGVGVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDMLLKNNSELLNNLGN 652
Query: 657 FINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNIS 716
FINRA F+ K +G +PE+ +D LLA + EL Y+ +L+K ++R+ +R IL IS
Sbjct: 653 FINRAGMFVSKFFGGYVPEMVLTSDDRRLLAHVTLELQHYHQLLEKVRIREALRSILTIS 712
Query: 717 RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVXXXXXXXXXXXXXXTASTIASQLG 776
R+ NQY+Q +PW KGS + RA TV G+ + ++TI +QL
Sbjct: 713 RHGNQYIQVNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQ 772
Query: 777 AXXXXXXXXXXXXXXXXXPTGHKIGTPAPLFRKIEQAQVDEWKLKYGGXXXXXXXXXXXX 836
P GH+IGT +PLF+K+E Q++ + ++GG
Sbjct: 773 VPPPACSILLTNFLCTL-PAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTPPTPAEA 831
Query: 837 XXXAEITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL 888
A ++ L V QGN+VR++K+ +K++ V KLL LKKQL
Sbjct: 832 MAAAAP--QQIQVLMDEVTKQGNIVRELKAQKADKNQVAAEVAKLLDLKKQL 881
|
|
| UNIPROTKB|I3LCC2 LOC100516610 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1661 (589.8 bits), Expect = 1.1e-185, Sum P(2) = 1.1e-185
Identities = 339/688 (49%), Positives = 443/688 (64%)
Query: 219 KKSNKQQPE-SKAKPAAVVEDDLSSKSKDVTSEEIEQTKVAWTQG--SPVPLRTRTAPVL 275
K+ ++QP+ S + AV + + ++ EEI AW +G S PLR + PVL
Sbjct: 191 KQHLQKQPQPSFLEGRAVSNEPEEEELATLSEEEIAMAVAAWEKGLGSLPPLRPQQNPVL 250
Query: 276 PQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTAT 335
P E N+LITSALPYVNNVPHLGNIIGCVLSADVF+R+ RL NTLY+ GTDEYGTAT
Sbjct: 251 PVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTAT 310
Query: 336 ETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGF 395
ETKA+EEGLTP++ICDKY A+H ++Y WF I FD FGRT+TPQQT+I Q +F R+ GF
Sbjct: 311 ETKAMEEGLTPQEICDKYHAVHADIYRWFNISFDIFGRTTTPQQTKITQDIFQRLFTRGF 370
Query: 396 TSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQC 455
+VEQL C C RFLADRFVEGVCP C YE+ARGDQCD CG+LINAIEL + + K
Sbjct: 371 VLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDKCGKLINAIELKKKK-KDK 429
Query: 456 SQAPTVKSSTQLFLELP-KIEDKLQSWVSET--SDQWSSNARVICKAWLKDGLKPRCITR 512
++ + L+ LP ++E +L+ W+ +T W+ NAR I ++WL+DGLKPRCITR
Sbjct: 430 TEHTCECPKSALYASLPSQLEKRLEEWLEKTLPGSDWTPNARFIIRSWLRDGLKPRCITR 489
Query: 513 DLKWGIPVPLPGFENKYSLSSSPSLVQFLP-TA--TPQ--------SKITLYQFMAKDNV 561
DLKWG PVPL GFE+K + + +L TA T Q +++LYQFMAKDNV
Sbjct: 490 DLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVSLYQFMAKDNV 549
Query: 562 PFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIF 621
PFH ++FP + + D YT V+H++ATEYLNYEDGKFSKSRG GVFG+ A++TG+PADI+
Sbjct: 550 PFHGLVFPCSALGTEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQNTGIPADIW 609
Query: 622 RFYLLYVRPENQDTSFSWQDLATKNNSELLNN-LGNFINRALSFIEKNYGSTIPEISPIH 680
RFYLLY+RPE QDT+FSW D+ KNNSELLNN LGN INRA F+ K +G +PE+
Sbjct: 610 RFYLLYIRPEGQDTAFSWTDMLLKNNSELLNNXLGNCINRAGMFVSKFFGCFVPEMVLTS 669
Query: 681 EDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKS 740
+D LLA + EL Y+ +L+KA++RD +R IL ISR+ NQY+Q +PW KGS +
Sbjct: 670 DDRRLLAHVTLELQHYHQLLEKARIRDALRSILTISRHGNQYIQVNEPWKRIKGSEADRQ 729
Query: 741 RASTVLGILCQVXXXXXXXXXXXXXXTASTIASQLGAXXXXXXXXXXXXXXXXXPTGHKI 800
RA TV G+ + ++TI +QL P GH+I
Sbjct: 730 RAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQL-QLSPPACSILPTNFLCTLPAGHQI 788
Query: 801 GTPAPLFRKIEQAQVDEWKLKYGGXXXXXXXXXXXXXXXAEITFSSVEELEAAVATQGNL 860
GT +PLF+K+E Q++ + ++GG V+ L V QGN+
Sbjct: 789 GTVSPLFQKLENDQIESLRQRFGGGQAKVSPKPAVVETVTTAGPQQVQVLMDEVTKQGNI 848
Query: 861 VRQVKSSGVEKSEWQPHVDKLLSLKKQL 888
VR++K+ +K++ V KLL LKKQL
Sbjct: 849 VRELKAQKADKNQVAAEVAKLLDLKKQL 876
|
|
| UNIPROTKB|A6NC17 MARS "Methionine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1673 (594.0 bits), Expect = 7.2e-178, Sum P(2) = 7.2e-178
Identities = 323/582 (55%), Positives = 405/582 (69%)
Query: 258 AWTQG--SPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFC 315
AW +G S PLR + PVLP E N+LITSALPYVNNVPHLGNIIGCVLSADVF+R+
Sbjct: 5 AWEKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYS 64
Query: 316 RLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTS 375
RL NTLY+ GTDEYGTATETKALEEGLTP++ICDKY IH ++Y WF I FD FGRT+
Sbjct: 65 RLRQWNTLYLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTT 124
Query: 376 TPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQC 435
TPQQT+I Q +F ++ K GF +VEQL C C RFLADRFVEGVCP C YE+ARGDQC
Sbjct: 125 TPQQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQC 184
Query: 436 DGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSET--SDQWSSNA 493
D CG+LINA+EL +P+CK C P V+SS LFL+LPK+E +L+ W+ T W+ NA
Sbjct: 185 DKCGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNA 244
Query: 494 RVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLP-TA--TPQ--- 547
+ I ++WL+DGLKPRCITRDLKWG PVPL GFE+K + + +L TA T Q
Sbjct: 245 QFITRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWER 304
Query: 548 -----SKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSR 602
++ LYQFMAKDNVPFHS++FP + + A D YT V+H++ATEYLNYEDGKFSKSR
Sbjct: 305 WWKNPEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSR 364
Query: 603 GTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRAL 662
G GVFG+ A+DTG+PADI+RFYLLY+RPE QD++FSW DL KNNSELLNNLGNFINRA
Sbjct: 365 GVGVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAG 424
Query: 663 SFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQY 722
F+ K +G +PE+ +D LLA + EL Y+ +L+K ++RD +R IL ISR+ NQY
Sbjct: 425 MFVSKFFGGYVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQY 484
Query: 723 MQTQQPWVLFKGSPEQKSRASTVLGILCQVXXXXXXXXXXXXXXTASTIASQLGAXXXXX 782
+Q +PW KGS + RA TV G+ + ++TI +QL
Sbjct: 485 IQVNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQL-QLPPPA 543
Query: 783 XXXXXXXXXXXXPTGHKIGTPAPLFRKIEQAQVDEWKLKYGG 824
P GH+IGT +PLF+K+E Q++ + ++GG
Sbjct: 544 CSILLTNFLCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGG 585
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.10 | 0.824 |
| 3rd Layer | 6.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1175 | |||
| PLN02610 | 801 | PLN02610, PLN02610, probable methionyl-tRNA synthe | 0.0 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 0.0 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 0.0 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 0.0 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 1e-164 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 1e-155 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 1e-127 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 4e-82 | |
| PRK12267 | 648 | PRK12267, PRK12267, methionyl-tRNA synthetase; Rev | 6e-74 | |
| PLN02224 | 616 | PLN02224, PLN02224, methionine-tRNA ligase | 2e-43 | |
| cd07957 | 129 | cd07957, Anticodon_Ia_Met, Anticodon-binding domai | 5e-39 | |
| cd00939 | 45 | cd00939, MetRS_RNA, MetRS_RNA binding domain | 1e-10 | |
| cd00939 | 45 | cd00939, MetRS_RNA, MetRS_RNA binding domain | 1e-10 | |
| cd00817 | 382 | cd00817, ValRS_core, catalytic core domain of valy | 1e-10 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 3e-10 | |
| TIGR00422 | 861 | TIGR00422, valS, valyl-tRNA synthetase | 3e-10 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 4e-10 | |
| pfam00458 | 56 | pfam00458, WHEP-TRS, WHEP-TRS domain | 9e-09 | |
| pfam00458 | 56 | pfam00458, WHEP-TRS, WHEP-TRS domain | 9e-09 | |
| cd00939 | 45 | cd00939, MetRS_RNA, MetRS_RNA binding domain | 1e-08 | |
| cd10307 | 102 | cd10307, GST_C_MetRS_N, Glutathione S-transferase | 1e-08 | |
| cd01200 | 42 | cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domai | 1e-08 | |
| cd01200 | 42 | cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domai | 1e-08 | |
| cd00939 | 45 | cd00939, MetRS_RNA, MetRS_RNA binding domain | 4e-08 | |
| smart00991 | 56 | smart00991, WHEP-TRS, A conserved domain of 46 ami | 2e-07 | |
| smart00991 | 56 | smart00991, WHEP-TRS, A conserved domain of 46 ami | 2e-07 | |
| pfam00458 | 56 | pfam00458, WHEP-TRS, WHEP-TRS domain | 1e-06 | |
| cd03181 | 123 | cd03181, GST_C_EF1Bgamma_like, Glutathione S-trans | 2e-06 | |
| COG0625 | 211 | COG0625, Gst, Glutathione S-transferase [Posttrans | 4e-06 | |
| pfam00458 | 56 | pfam00458, WHEP-TRS, WHEP-TRS domain | 6e-06 | |
| smart00991 | 56 | smart00991, WHEP-TRS, A conserved domain of 46 ami | 3e-05 | |
| cd10291 | 110 | cd10291, GST_C_YfcG_like, C-terminal, alpha helica | 3e-05 | |
| cd01200 | 42 | cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domai | 9e-05 | |
| smart00991 | 56 | smart00991, WHEP-TRS, A conserved domain of 46 ami | 1e-04 | |
| cd00299 | 100 | cd00299, GST_C_family, C-terminal, alpha helical d | 1e-04 | |
| TIGR00396 | 842 | TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba | 1e-04 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 1e-04 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 2e-04 | |
| TIGR00422 | 861 | TIGR00422, valS, valyl-tRNA synthetase | 2e-04 | |
| cd01200 | 42 | cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domai | 2e-04 | |
| PLN02734 | 684 | PLN02734, PLN02734, glycyl-tRNA synthetase | 2e-04 | |
| PLN02734 | 684 | PLN02734, PLN02734, glycyl-tRNA synthetase | 2e-04 | |
| cd10289 | 82 | cd10289, GST_C_AaRS_like, Glutathione S-transferas | 2e-04 | |
| cd10309 | 81 | cd10309, GST_C_GluProRS_N, Glutathione S-transfera | 4e-04 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 4e-04 | |
| PLN02610 | 801 | PLN02610, PLN02610, probable methionyl-tRNA synthe | 5e-04 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 6e-04 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 7e-04 | |
| COG0060 | 933 | COG0060, IleS, Isoleucyl-tRNA synthetase [Translat | 0.001 | |
| cd03177 | 117 | cd03177, GST_C_Delta_Epsilon, C-terminal, alpha he | 0.001 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 0.002 | |
| PLN02943 | 958 | PLN02943, PLN02943, aminoacyl-tRNA ligase | 0.002 | |
| cd00936 | 50 | cd00936, WEPRS_RNA, WEPRS_RNA binding domain | 0.003 | |
| cd00936 | 50 | cd00936, WEPRS_RNA, WEPRS_RNA binding domain | 0.004 | |
| cd00936 | 50 | cd00936, WEPRS_RNA, WEPRS_RNA binding domain | 0.004 | |
| pfam00133 | 606 | pfam00133, tRNA-synt_1, tRNA synthetases class I ( | 0.004 |
| >gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 714 bits (1844), Expect = 0.0
Identities = 306/635 (48%), Positives = 406/635 (63%), Gaps = 38/635 (5%)
Query: 268 RTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSG 327
++ P LP P + NILITSALPYVNNVPHLGNIIGCVLSADVF+R+CRL N +Y+ G
Sbjct: 4 EGKSPPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICG 63
Query: 328 TDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLF 387
TDEYGTATETKALEE TP++ICDKY AIH+EVY+WF+I FD FGRTSTPQQTEI Q +F
Sbjct: 64 TDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIF 123
Query: 388 DRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPK--CRYEDARGDQCDGCGQLINAI 445
++ + + S +++QL+C C +FLADR VEG CP C Y+ ARGDQC+ CG+L+N
Sbjct: 124 KKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPT 183
Query: 446 ELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ--WSSNARVICKAWLKD 503
ELI P+CK C P ++ + LFLELP ++DKL +++ETS WS NA AWL+D
Sbjct: 184 ELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRD 243
Query: 504 GLKPRCITRDLKWGIPVPLPGFENK--YSLSSSP-SLVQFLPTATPQ--------SKITL 552
GLKPRCITRDLKWG+PVPL +++K Y +P V TP+ + L
Sbjct: 244 GLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVEL 303
Query: 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAK 612
YQFM KDNVPFH++MFP+TL+ G+ +T + I TEYLNYE GKFSKS+G GVFGN+AK
Sbjct: 304 YQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAK 363
Query: 613 DTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEK----N 668
DT +P +++R+YLL RPE DT F+W DL K NSELLNNLGNFINR LSFI K
Sbjct: 364 DTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAG 423
Query: 669 YGSTIPEISPIHEDFLLLAL---INRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQT 725
YGS IP+ L L + + + Y ++K KL+ G++ ++IS N Y+Q
Sbjct: 424 YGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQE 483
Query: 726 QQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLS 785
Q W L+K E K + V+ + YLL+ LL P+MPS + + QL SLS
Sbjct: 484 SQFWKLYK---EDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPESLSLS 540
Query: 786 SSPSLV-------QFLPTGHKIGTPAPLFRKIEQAQVDEWKLKYGGQQNKESSNNKKEKK 838
V + +P GHKIGTP PLF++++ +V+ ++ K+ G Q ++ +
Sbjct: 541 DEKGEVARAKRPWELVPAGHKIGTPEPLFKELKDEEVEAYREKFAGSQADRAA-----RA 595
Query: 839 QAEITFSSVEEL-EAAVATQGNLVRQVKSSGVEKS 872
+A ++L + A++ G + K+ G KS
Sbjct: 596 EAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKS 630
|
Length = 801 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 617 bits (1593), Expect = 0.0
Identities = 221/562 (39%), Positives = 318/562 (56%), Gaps = 28/562 (4%)
Query: 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALE 341
ILITSA PY N HLG++ G L ADVF+R+ RL L+VSG+DE+GT E A +
Sbjct: 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK 63
Query: 342 EGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASV 401
EG+TP+++ DKY H+E ++ I +D F RT++P E+VQ F ++++ G+ ++
Sbjct: 64 EGVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTI 123
Query: 402 EQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV 461
EQ +C RFL DR+VEG CP C YE ARGDQCD CG L++ +LI PR K P
Sbjct: 124 EQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEF 183
Query: 462 KSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVP 521
+ + FL+LP ++L++W+ E+S W N WLK+GLKPR ITRDL WGIPVP
Sbjct: 184 RETEHFFLDLPAFAERLRAWI-ESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP 242
Query: 522 LPGFENKY----------SLSSSPSLVQFLPTATP--------QSKITLYQFMAKDNVPF 563
PGFE K +S+S T P + Y F+ KDN+PF
Sbjct: 243 WPGFEGKVFYVWFDAVIGYISASKEW--AERTGDPEAWKEFWLDPETKSYYFIGKDNIPF 300
Query: 564 HSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRF 623
HSI++PA L+ +G+ + I+++EYL E GKFSKSRG G++ ++A + P D R+
Sbjct: 301 HSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALER-YPPDYLRY 359
Query: 624 YLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDF 683
YL PEN DT F+W++ + NSEL + GN +NR LSFIEK +G +P ED
Sbjct: 360 YLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVPPGELGDEDR 419
Query: 684 LLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRAS 743
L+A +L+ + + + I+ ++R N+Y+ + PW L K E RA+
Sbjct: 420 ELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKTDRE---RAA 476
Query: 744 TVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTP 803
TVL + LL++LL P++P +A I LG + + ++ L GH I P
Sbjct: 477 TVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLG---GENIEKLTWESLKPLLPGHPINKP 533
Query: 804 APLFRKIEQAQVDEWKLKYGGQ 825
PLF+KI+ Q++E + GG
Sbjct: 534 EPLFKKIDDEQIEEELERLGGA 555
|
Length = 556 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 576 bits (1488), Expect = 0.0
Identities = 204/566 (36%), Positives = 290/566 (51%), Gaps = 28/566 (4%)
Query: 278 PNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATET 337
IL+T+ALPY N PHLG++ L+ADV++R+ RL +++GTDE+GT E
Sbjct: 2 KMMKKILVTTALPYPNGPPHLGHLYT-YLAADVYARYLRLRGYEVFFLTGTDEHGTKIEL 60
Query: 338 KALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTS 397
KA +EG+TP+++ DK +E+++ I FD F RT++P+ E+VQ F ++++ G
Sbjct: 61 KAEKEGITPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIY 120
Query: 398 SASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQ 457
E L+C C+RFL DR+VEG CPKC EDARGDQC+ CG+ ++ ELI P C
Sbjct: 121 LREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGA 180
Query: 458 APTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITR-DLK 515
P V+ F L K +DKL W D W +N R +LK+GLK ITR DL
Sbjct: 181 TPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLD 240
Query: 516 WGIPVPLPGFENKY------SLSSSPSLVQFLPTATPQSK---------ITLYQFMAKDN 560
WGIPV PG K +L S + L L F+ KD
Sbjct: 241 WGIPV--PGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDI 298
Query: 561 VPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADI 620
+ FH++ +PA L+AAG I A +L E K SKSRG V + + D
Sbjct: 299 IRFHAVYWPAMLMAAG--LPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDA 355
Query: 621 FRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIH 680
R+YL PE D FSW+D + N++L N LGN NR L FI K + +P
Sbjct: 356 LRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPD 415
Query: 681 EDFL--LLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQ 738
+ LLAL L A ++K + R + I+ ++ N+Y+ Q PW L K +
Sbjct: 416 LEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKED--K 473
Query: 739 KSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGH 798
+ R +TVL + ++ +L++LL P+MP TA I QLG + + Q L GH
Sbjct: 474 RERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWL-GARQPLLPGH 532
Query: 799 KIGTPAPLFRKIEQAQVDEWKLKYGG 824
K+G P PLF +IE+ ++E
Sbjct: 533 KLGPPEPLFPRIEEEAIEELIEALKE 558
|
Length = 558 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 568 bits (1467), Expect = 0.0
Identities = 180/627 (28%), Positives = 285/627 (45%), Gaps = 55/627 (8%)
Query: 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE 342
IL+T ALPY N HLG+++ + AD++ R+ R+ L+V D +GT KA +E
Sbjct: 4 ILVTCALPYANGPIHLGHLVE-YIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE 62
Query: 343 GLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVE 402
G+TP ++ +Y A H+ + F I FD +G T + + E+ Q ++ ++ + G+ ++E
Sbjct: 63 GITPEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIE 122
Query: 403 QLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVK 462
QL+ + FL DRFV+G CPKC ED GD C+ CG + ELI P+ P +K
Sbjct: 123 QLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLK 182
Query: 463 SSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKW-GIPVP 521
S F +LP+ E+ L+ W+ S + N K WL++GL+ I+RD + G +
Sbjct: 183 ESEHFFFKLPRFEEFLKEWI-TRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEI- 240
Query: 522 LPGFENKY----------SLSSSPSLVQ------FLPTATPQSKITLYQFMAKDNVPFHS 565
PG K +SS+ +L + S LY F+ KD + FH+
Sbjct: 241 -PGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHT 299
Query: 566 IMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYL 625
+ +PA L AG Y ++ A +L E K SKSRGT ++ D L D R+YL
Sbjct: 300 LFWPAMLEGAG--YRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDH-LDPDYLRYYL 356
Query: 626 LYVRPEN-QDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFL 684
PE D F+W+D + NSEL+ + NF +R FI K + +P+ E
Sbjct: 357 AAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDGKLPDALADPE--- 413
Query: 685 LLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRAST 744
LL + + R +R I+ ++ + N+Y+ +PW L K E R
Sbjct: 414 LLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAKQDGE---RLQA 470
Query: 745 VLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPA 804
V + + L++ L P +P A + L L + + P GH I
Sbjct: 471 VCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEELTWDDAQQP------LAGHPINKFK 524
Query: 805 PLFRKIEQAQVDEWKLKY------GGQQNKESSNNKKEKKQAEITFSSVEELEAAVATQG 858
LF +IE Q++ ++ +E I+F +++ VA
Sbjct: 525 ILFTRIEDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAETISFDDFAKVDLRVA--- 581
Query: 859 NLVRQVKSSGVEKSEWQPHVDKLLSLK 885
+ V++ VE + DKLL L
Sbjct: 582 ---KIVEAEKVEGA------DKLLKLT 599
|
Length = 673 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 496 bits (1280), Expect = e-164
Identities = 206/547 (37%), Positives = 284/547 (51%), Gaps = 35/547 (6%)
Query: 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE 342
ILIT+ALPY N PHLG+ + ADV++R+ RL L+V GTDE+GT E KA +E
Sbjct: 1 ILITTALPYANGKPHLGHAY-TTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE 59
Query: 343 GLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVE 402
GLTP+++ DKY ++ ++W I FD F RT+ + EIVQ +F ++ + G+ ++
Sbjct: 60 GLTPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIK 119
Query: 403 QLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVK 462
QL+C +C+ FL DR+VEG CPKC EDARGD C+ CG+ + ELI PRCK C P ++
Sbjct: 120 QLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELR 179
Query: 463 SSTQLFLELPKIEDKLQSWVSE--TSDQWSSNARVICKAWLKDGLKPRCITRDLK-WGIP 519
S F L E +L+ W+ + S +SN + + WLK GLK ITRDL WGIP
Sbjct: 180 DSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIP 239
Query: 520 VPLPGFENKY------SLSSSPSLVQFLPTATP--------QSKITLYQFMAKDNVPFHS 565
V P NK +L S + L T L F+ KD V FH+
Sbjct: 240 V--PNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHT 297
Query: 566 IMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYL 625
I +PA L+ G + + YL E GK SKS G V ++ ADI R+YL
Sbjct: 298 IYWPAMLMGLG--LPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLA-RFGADILRYYL 354
Query: 626 LYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHE-DFL 684
L RP +D FSW+D + N++L N LGN +NR L FI+K + +P E D
Sbjct: 355 LKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKK 414
Query: 685 LLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRAST 744
LL LIN L ++ + R +R I+ ++ N+Y+ +PW LFK SP K
Sbjct: 415 LLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQSPRLK----E 470
Query: 745 VLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPA 804
+L + + +LS+LL P MP + I L L GHK+
Sbjct: 471 LLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELEWDFKLK-------LLEGHKLNKAE 523
Query: 805 PLFRKIE 811
PLF KIE
Sbjct: 524 PLFSKIE 530
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 467 bits (1204), Expect = e-155
Identities = 158/396 (39%), Positives = 219/396 (55%), Gaps = 24/396 (6%)
Query: 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE 342
LIT+ALPYVN PH+G++ + ADV++R+ RL + L+V+GTDE+GT E A +E
Sbjct: 1 FLITTALPYVNGPPHIGHLYT-TIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE 59
Query: 343 GLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVE 402
G+TP+++ D+Y +E+++ F I FD F RT++ + E+VQ F ++++ G E
Sbjct: 60 GVTPQELVDRYHEEFKELFKKFNISFDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYE 119
Query: 403 QLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVK 462
+C +RFL DR+VEG CP C EDARGDQC+ CG+ + ELI PR P +K
Sbjct: 120 GWYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPELK 179
Query: 463 SSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL 522
F L K +DKL W+ E D+ SN + +WLK+GLK ITRDL WGIPV
Sbjct: 180 EEEHYFFRLSKFQDKLLEWIKENPDEPPSNVNEVVLSWLKEGLKDLSITRDLDWGIPV-- 237
Query: 523 PGFENKY----------------SLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSI 566
PG K LS +P + P ++I F+ KD + FH+I
Sbjct: 238 PGDPGKVIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEI--VHFIGKDIIRFHAI 295
Query: 567 MFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLL 626
+PA L+AAG + A +L E GK SKSRG V + D D R+YL
Sbjct: 296 YWPAMLMAAG--LPLPTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDR-YGVDALRYYLA 352
Query: 627 YVRPENQDTSFSWQDLATKNNSELLNNLGNFINRAL 662
PE +D FSW+D + NSEL N+LGN +NR L
Sbjct: 353 REAPEGKDGDFSWEDFVERVNSELANDLGNLVNRTL 388
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 391 bits (1007), Expect = e-127
Identities = 135/371 (36%), Positives = 188/371 (50%), Gaps = 67/371 (18%)
Query: 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALE 341
+LIT+ALPYVN VPHLG++ G VL ADVF+R+ RL + L+V+GTDE+GT E KA E
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVL-ADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE 59
Query: 342 EGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASV 401
EG+TP+++CDKY I +++++W I FDYF RT++P+ EIVQ F ++++ G+
Sbjct: 60 EGVTPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEY 119
Query: 402 EQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV 461
E L+C C+RFL P
Sbjct: 120 EGLYCVSCERFL---------------------------------------------PEW 134
Query: 462 KSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITRDL-KWGIP 519
+ F L K +D+L W+ + D W NAR +WLK+GLK ITRDL WGIP
Sbjct: 135 REEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIP 194
Query: 520 VPLPGFENK-----------YSLSSSPSLVQFLPTATPQSKIT--LYQFMAKDNVPFHSI 566
VPL K Y +S++ + + L F+ KD + FH+I
Sbjct: 195 VPL--DPGKVIYVWFDALIGY-ISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAI 251
Query: 567 MFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLL 626
+PA L+ AG I+A YL E K SKSRG V ++ + AD R+YLL
Sbjct: 252 YWPAMLLGAG--LPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERY-GADALRYYLL 308
Query: 627 YVRPENQDTSF 637
RPE +D+ F
Sbjct: 309 RERPEGKDSDF 319
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 277 bits (711), Expect = 4e-82
Identities = 150/557 (26%), Positives = 228/557 (40%), Gaps = 74/557 (13%)
Query: 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL 340
IT+ + Y N PH+G+ L+ADV +RF RL + +++GTDE+G + KA
Sbjct: 1 KKFYITTPIYYPNGKPHIGHA-YTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAE 59
Query: 341 EEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSAS 400
E G++P+++ D+ A + ++E I +D F RT+ P+ E VQ +F R+ G
Sbjct: 60 EAGISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGK 119
Query: 401 VEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQP--RCKQCSQA 458
E +C +C+ F + ELI+ RC
Sbjct: 120 YEGWYCVRCEEFYTES-----------------------------ELIEDGYRCPPTGAP 150
Query: 459 PTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAW-------LKDGLKPRCIT 511
F L K +DKL D + + +K GLK I+
Sbjct: 151 VEWVEEESYFFRLSKYQDKLLELYEANPD------FIQPASRRNEVISFVKSGLKDLSIS 204
Query: 512 R-DLKWGIPVP-------------LPGFEN--KYSLSSSPSLVQFLPTATPQSKITLYQF 555
R + WGIPVP L + Y F
Sbjct: 205 RTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADV-----HL 259
Query: 556 MAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTG 615
+ KD + FH++ +PA L+AAG + A +L + K SKS G + + D
Sbjct: 260 IGKDILRFHAVYWPAFLMAAG--LPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDE- 316
Query: 616 LPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE 675
D R++LL P QD FS + + N++L N+LGN R LS I KN+ +PE
Sbjct: 317 YGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPE 376
Query: 676 ISP-IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKG 734
D LL L + +D + IL + R N+Y+ Q PW L K
Sbjct: 377 PGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWSLAK- 435
Query: 735 SPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFL 794
R +TVL L +V +++LL P MP A+ I QLG + ++ S + L
Sbjct: 436 --TDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRDFAALSWGR-L 492
Query: 795 PTGHKIGTPAPLFRKIE 811
G + P P+F ++E
Sbjct: 493 APGTTLPKPEPIFPRLE 509
|
Length = 511 |
| >gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 6e-74
Identities = 177/644 (27%), Positives = 288/644 (44%), Gaps = 110/644 (17%)
Query: 280 ENNILITSALPYVNNVPHLGN----IIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTAT 335
+ IT+ + Y N PH+G+ I AD +R+ RL + +++GTDE+G
Sbjct: 3 KKTFYITTPIYYPNGKPHIGHAYTTIA-----ADALARYKRLQGYDVFFLTGTDEHGQKI 57
Query: 336 ETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGF 395
+ A + G TP++ D+ A +E+++ +I +D F RT+ + ++VQ +F+++++ G
Sbjct: 58 QQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGD 117
Query: 396 TSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQC 455
E +C C+ F + QL++ +C C
Sbjct: 118 IYKGEYEGWYCVSCETFFTES-----------------------QLVD-----GGKCPDC 149
Query: 456 SQAPTVKSSTQLFLELPKIEDKLQSWVSETSD--QWSSNARVICKAWLKDGLKPRCITRD 513
+ + F + K +D+L + E D Q S + ++K GL+ I+R
Sbjct: 150 GREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRT 209
Query: 514 -LKWGIPVPLPGFENKY-----------------SLSSSPSLVQ-FLPTATPQSKITLYQ 554
WGIPVP F+ K+ S L + F P
Sbjct: 210 SFDWGIPVP---FDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWPAD--------VH 258
Query: 555 FMAKDNVPFHSIMFPATLVAAG-DQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKD 613
+ KD + FH+I +P L+A G KV A + +DGK SKS+G N D
Sbjct: 259 LVGKDILRFHAIYWPIMLMALGLPLPKKVF---AHGWWLMKDGKMSKSKG------NVVD 309
Query: 614 T-------GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIE 666
GL D R+YLL P D FS + L + NS+L N+LGN +NR ++ I
Sbjct: 310 PEELVDRYGL--DALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMIN 367
Query: 667 KNYGSTIPEISPIHE-DFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQT 725
K + IP + E D L+AL L Y ++++ + + + + N+Y+
Sbjct: 368 KYFDGEIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDE 427
Query: 726 QQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLS 785
PWVL K +K R +TV+ L + +++LLSP+MP T+ I QLG L+ L+
Sbjct: 428 TAPWVLAK-DEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLG---LEEELT 483
Query: 786 SSPSLVQF--LPTGHKIGTPAPLFRKIE-QAQVDEWKLKYGGQQNKESSNNKKEKKQAEI 842
S SL+++ LP G K+ PLF +I+ + ++ K + G KE +K+ ++ EI
Sbjct: 484 SWESLLEWGGLPAGTKVAKGEPLFPRIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEI 543
Query: 843 TFSSVEELEAAVATQGNLVRQVKS-SGVEKSEWQPHVDKLLSLK 885
T +++E VA V VEKS DKLL L+
Sbjct: 544 TIDDFDKVELRVAE-------VLEAEKVEKS------DKLLKLQ 574
|
Length = 648 |
| >gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 2e-43
Identities = 150/563 (26%), Positives = 248/563 (44%), Gaps = 51/563 (9%)
Query: 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEG 343
++T+ L YVN PH+G+ ++AD +RF RL+ + ++++GTDE+G T A G
Sbjct: 72 VLTTPLYYVNAPPHMGSAY-TTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANG 130
Query: 344 LTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQ 403
P + CD +R +++ +I +D F RT+ P+ IV+ + RV G A E
Sbjct: 131 RNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEG 190
Query: 404 LHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV-K 462
L+C C+ Y+D + EL++ C Q P V +
Sbjct: 191 LYCVNCEE---------------YKDEK--------------ELLENNCCPVHQMPCVAR 221
Query: 463 SSTQLFLELPKIEDKLQSWVSETSDQWSSNARV-ICKAWLKDGLKPRCITRDL-KWGIPV 520
F L K + L+ +++ + R+ ++W+K GL+ I+R L WGIPV
Sbjct: 222 KEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPV 281
Query: 521 PLPGFENKY----------SLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPA 570
P + Y S + + Q L TA + KD + FH++ +PA
Sbjct: 282 PDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPA 341
Query: 571 TLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRP 630
L++AG + K+ + +L + K KS G + P D R++ L
Sbjct: 342 MLMSAGLELPKM--VFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGP-DAVRYFFLREVE 398
Query: 631 ENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIH-EDFLLLALI 689
D +S N+ L N +GN +NR L ++KN ST+ E S + E L +
Sbjct: 399 FGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTV 458
Query: 690 NRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGIL 749
+ + + + L +L I N YM + PW LFK A+ L I+
Sbjct: 459 EKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVII 518
Query: 750 CQVSYLLSLLLSPYMPSTASTIASQLGASHLKY-SLSSSPSLVQFLPTGHKIGTPAPLFR 808
+V ++++ LSP P + I SQLG S ++ S++ S + L G + +P+F
Sbjct: 519 LEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSITWSDTKWGGLKGGQVMEQASPVFA 578
Query: 809 KIE---QAQVDEWKLKYGGQQNK 828
+IE + + DE K K G + K
Sbjct: 579 RIELNPEKEEDEKKPKVGKKTGK 601
|
Length = 616 |
| >gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 5e-39
Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Query: 646 NNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHE-DFLLLALINRELSAYYSVLDKAK 704
NSEL NNLGN +NR L+ K +G +PE + E D LL L +++ +
Sbjct: 1 INSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELE 60
Query: 705 LRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYM 764
R + I+ ++R N+Y+ PW L K E R +TVL +L ++ +L++LLSP+M
Sbjct: 61 FRKALEEIMELARAANKYIDETAPWKLAKE--EDPERLATVLYVLLELLRILAILLSPFM 118
Query: 765 PSTASTIASQL 775
P TA I QL
Sbjct: 119 PETAEKILDQL 129
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. Length = 129 |
| >gnl|CDD|238475 cd00939, MetRS_RNA, MetRS_RNA binding domain | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-10
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 850 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMK 892
LE VA QGN VR++K+S +KS WQP V+KLL LKKQL +
Sbjct: 1 LEKEVAEQGNKVRKLKASKADKSVWQPEVNKLLDLKKQLALAE 43
|
This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. Length = 45 |
| >gnl|CDD|238475 cd00939, MetRS_RNA, MetRS_RNA binding domain | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-10
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMK 1078
LE VA QGN VR++K+S +KS WQP V+KLL LKKQL +
Sbjct: 1 LEKEVAEQGNKVRKLKASKADKSVWQPEVNKLLDLKKQLALAE 43
|
This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. Length = 45 |
| >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 54/253 (21%), Positives = 94/253 (37%), Gaps = 58/253 (22%)
Query: 290 PYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETK----ALEEGLT 345
P V H+G+ + + D+ +R+ R+ N L+ GTD G AT+ EG T
Sbjct: 10 PNVTGSLHMGHALNNTI-QDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKT 68
Query: 346 PRQICDKYFAIHREVYEWFE----------------IDFDYFGRTSTPQQTEIVQHLFDR 389
+ + F + +EW E +D+ T P + VQ F R
Sbjct: 69 RHDLGREEFL--EKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVR 126
Query: 390 VHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQ 449
+++ G + + +R V CPK R + + C G + IE +
Sbjct: 127 LYEKGL-----IYR----------DNRLVN-WCPKLRTAISDIEVCSRSG---DVIEPL- 166
Query: 450 PRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWS-SNARVICKAWLKDGLKPR 508
Q F+++ + K V E ++ + WL++ ++
Sbjct: 167 -------------LKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLEN-IRDW 212
Query: 509 CITRDLKWGIPVP 521
CI+R L WG +P
Sbjct: 213 CISRQLWWGHRIP 225
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 38/196 (19%)
Query: 461 VKSSTQLFLELPKIEDKLQSWVSETS---DQWSSNARVICKAWLKDGLKPRCITRDLKWG 517
V+ + Q F ++PK ++KL + + + R+ +AWL+ L I+R WG
Sbjct: 136 VRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKN--RM--EAWLESLLD-WAISRQRYWG 190
Query: 518 IPVPLPGFENKYSLSS-------SPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPA 570
P+P F+ + P ++ + P + + KD + + +
Sbjct: 191 TPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYP----ADWHLIGKDILRGWANFWIT 246
Query: 571 TLVAAGDQYTKVNHIMATEYLNYEDG-KFSKSRGTGV--------FGNNAKDTGLPADIF 621
LVA + +++ ++ E G K SKS+G + +G AD
Sbjct: 247 MLVALFGE-IPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYG---------ADAL 296
Query: 622 RFYLLYVRPENQDTSF 637
R+YL + P D
Sbjct: 297 RYYLTSLAPYGDDIRL 312
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-10
Identities = 83/368 (22%), Positives = 130/368 (35%), Gaps = 78/368 (21%)
Query: 464 STQLFLELPKIEDKLQSWVSETSDQW---SSNARVICKAWLKDGLKPRCITRDLKWG--I 518
S Q F+++ K+ DK E ++ R WL++ +K CI+R L WG I
Sbjct: 355 SKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRY--LNWLRN-IKDWCISRQLIWGHRI 411
Query: 519 PV---------------PLPGFENKYSLSS-------------SPSLVQFLPTATPQSKI 550
PV PLP + S S SL F P
Sbjct: 412 PVWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETK 471
Query: 551 TLYQFMAKDNVPF-HSIMF--PATLVAAGDQYTK---VNHIMATEYLNYEDG-KFSKSRG 603
L +F D + + I+F A ++ T + + E G K SKS G
Sbjct: 472 DLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLG 531
Query: 604 TGV--------FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLG 655
+ +G AD RF L + D +F W+ + ++ LN L
Sbjct: 532 NVIDPLDVIEKYG---------ADALRFTLASLVTPGDDINFDWKRV--ESARNFLNKLW 580
Query: 656 NFINRALSFIEKNYGSTIPEISPIHEDFLL-----LALINRELSAYYSVLDKAKLRDGIR 710
N A F+ N S E+S E L L+ +NR + LDK + + +
Sbjct: 581 N----ASRFVLMN-LSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAK 635
Query: 711 YILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTA 768
+ + +C+ Y++ + L+ G+ +K A L + LL P+MP
Sbjct: 636 ALYEFIWNDFCDWYIELVKY-RLYNGNEAEKKAARDTLYYVLDK---ALRLLHPFMPFIT 691
Query: 769 STIASQLG 776
I
Sbjct: 692 EEIWQHFK 699
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE 342
+T+ PY N HLG+ + ++ AD +R+ R+ ++ G D +G E KA +
Sbjct: 2 FYVTTPPPYANGSLHLGHALTHII-ADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 343 GL-------------TPRQICDKYFAIHREVYEWFEI--DFDYFGRTSTPQQTEIVQHLF 387
G P++ ++ H+E + I D+ T+ P+ ++ V+ +F
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 388 DRVHKAGF 395
R+++ G
Sbjct: 121 SRLYEKGL 128
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|215929 pfam00458, WHEP-TRS, WHEP-TRS domain | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 9e-09
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 850 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEA 890
L +A QG+LVR++K+ K + V KLL+LKKQ +
Sbjct: 1 LYEKIAAQGDLVRKLKAKKAPKEDVDAAVKKLLALKKQYKE 41
|
Length = 56 |
| >gnl|CDD|215929 pfam00458, WHEP-TRS, WHEP-TRS domain | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 9e-09
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEA 1076
L +A QG+LVR++K+ K + V KLL+LKKQ +
Sbjct: 1 LYEKIAAQGDLVRKLKAKKAPKEDVDAAVKKLLALKKQYKE 41
|
Length = 56 |
| >gnl|CDD|238475 cd00939, MetRS_RNA, MetRS_RNA binding domain | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-08
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 920 LEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGT 965
LE E+ +Q VR LKAS DKSV+ ++ KLL LK+QL+ G
Sbjct: 1 LEKEVAEQGNKVRKLKAS-KADKSVWQPEVNKLLDLKKQLALAEGK 45
|
This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. Length = 45 |
| >gnl|CDD|198340 cd10307, GST_C_MetRS_N, Glutathione S-transferase C-terminal-like, alpha helical domain of Methionyl-tRNA synthetase from higher eukaryotes | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-08
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 75 AINQWLEWESVELFPSVLSFF----DNPKVLPDNLKTKLNVLNE-----AISNSFLIENS 125
NQWLEWE+ L P++ K +L T LN L ++ L+ +
Sbjct: 4 LSNQWLEWEAWLLQPALSLALALTHVQGKKSEADLNTVLNALVHLDQSLLKKSTPLLGDK 63
Query: 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKL 166
+ AD+ +W+ +YPL +D P + N+ W+ +S L
Sbjct: 64 LSSADVVVWSALYPLGTDKSALP--ENLDNLRRWFQNVSTL 102
|
Glutathione S-transferase (GST) C-terminal domain family, Methionyl-tRNA synthetase (MetRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of MetRS from higher eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. MetRS is a class I aaRS, containing a Rossman fold catalytic core. It recognizes the initiator tRNA as well as the Met-tRNA for protein chain elongation. The GST_C-like domain of MetRS from higher eukaryotes is likely involved in protein-protein interactions, to mediate the formation of the multi-aaRS complex that acts as a molecular hub to coordinate protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain. Length = 102 |
| >gnl|CDD|238605 cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domain | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-08
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 851 EAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEA 890
+A QG+LVR++K+ K E V KLL+LK Q +
Sbjct: 1 YEKIAEQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKE 40
|
This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. Length = 42 |
| >gnl|CDD|238605 cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domain | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-08
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1037 EAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEA 1076
+A QG+LVR++K+ K E V KLL+LK Q +
Sbjct: 1 YEKIAEQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKE 40
|
This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. Length = 42 |
| >gnl|CDD|238475 cd00939, MetRS_RNA, MetRS_RNA binding domain | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-08
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
LE E+ +Q VR LKAS DKS++ ++ KLL LK+QL+ G
Sbjct: 1 LEKEVAEQGNKVRKLKAS-KADKSVWQPEVNKLLDLKKQLALAEG 44
|
This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. Length = 45 |
| >gnl|CDD|214960 smart00991, WHEP-TRS, A conserved domain of 46 amino acids, called WHEP-TRS has been shown | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 851 EAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDA 901
E AVA QG LVR++K+ K E V KLL+LK QL+ Q
Sbjct: 1 EEAVAAQGELVRKLKAEKASKDEIDAAVAKLLALKAQLKEATGQDYKPGAP 51
|
to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes. Length = 56 |
| >gnl|CDD|214960 smart00991, WHEP-TRS, A conserved domain of 46 amino acids, called WHEP-TRS has been shown | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 1037 EAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDA 1087
E AVA QG LVR++K+ K E V KLL+LK QL+ Q
Sbjct: 1 EEAVAAQGELVRKLKAEKASKDEIDAAVAKLLALKAQLKEATGQDYKPGAP 51
|
to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes. Length = 56 |
| >gnl|CDD|215929 pfam00458, WHEP-TRS, WHEP-TRS domain | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 920 LEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGT 965
L +I Q ++VR LKA K A + KLL+LK+Q TG
Sbjct: 1 LYEKIAAQGDLVRKLKA-KKAPKEDVDAAVKKLLALKKQYKEKTGK 45
|
Length = 56 |
| >gnl|CDD|198290 cd03181, GST_C_EF1Bgamma_like, Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of Elongation Factor 1B and similar proteins | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 73 ESAINQWLEWESVELFPSVLSFF-----------DNPKVLPDNLKTKLNVLNEAI-SNSF 120
+ + QW+ + + EL P+ ++ ++LK L VL E + + ++
Sbjct: 2 AAQVLQWISFANSELLPAAATWVLPLLGIAPYNKKAVDKAKEDLKRALGVLEEHLLTRTY 61
Query: 121 LIENSTTVADI---CIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
L+ T+ADI + + D + R Y N+T W++ + P+ +
Sbjct: 62 LVGERITLADIFVASALLRGFETVLDPEFR---KKYPNVTRWFNTVVNQPKFKAVFG 115
|
Glutathione S-transferase (GST) C-terminal domain family, Gamma subunit of Elongation Factor 1B (EF1Bgamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in protein biosynthesis, EF1Bgamma may also display other functions. The recombinant rice protein has been shown to possess GSH conjugating activity. The yeast EF1Bgamma binds to membranes in a calcium dependent manner and is also part of a complex that binds to the msrA (methionine sulfoxide reductase) promoter suggesting a function in the regulation of its gene expression. Also included in this subfamily is the GST_C-like domain at the N-terminus of human valyl-tRNA synthetase (ValRS) and its homologs. Metazoan ValRS forms a stable complex with Elongation Factor-1H (EF-1H), and together, they catalyze consecutive steps in protein biosynthesis, tRNA aminoacylation and its transfer to EF. Length = 123 |
| >gnl|CDD|223698 COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 40/186 (21%)
Query: 26 LDVELVDV-------ADARLLLS--KTVPVLELDDGSQLFSANQSCLYL-SKFDTKN--- 72
L E+V V L L+ VP L DDG L + YL ++
Sbjct: 24 LPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLP 83
Query: 73 --------ESAINQWLEWESVELFPSVLSFFDNPKVLPD------------NLKTKLNVL 112
+ + WL + + +L P + ++ L +L
Sbjct: 84 ADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALL 143
Query: 113 NEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLP---Q 168
+++ +L + T+ADI + ++ L + L+ Y + WY+R+ P
Sbjct: 144 EALLADGPYLAGDRFTIADIALAPLLWRLA---LLGEELADYPALKAWYERVLARPAFRA 200
Query: 169 VQKALK 174
VQ+AL+
Sbjct: 201 VQEALE 206
|
Length = 211 |
| >gnl|CDD|215929 pfam00458, WHEP-TRS, WHEP-TRS domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-06
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
L +I Q ++VR LKA K A + KLL+LK+Q TG
Sbjct: 1 LYEKIAAQGDLVRKLKA-KKAPKEDVDAAVKKLLALKKQYKEKTG 44
|
Length = 56 |
| >gnl|CDD|214960 smart00991, WHEP-TRS, A conserved domain of 46 amino acids, called WHEP-TRS has been shown | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 921 EAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTG 964
E + Q E+VR LKA K A +AKLL+LK QL TG
Sbjct: 1 EEAVAAQGELVRKLKA-EKASKDEIDAAVAKLLALKAQLKEATG 43
|
to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes. Length = 56 |
| >gnl|CDD|198324 cd10291, GST_C_YfcG_like, C-terminal, alpha helical domain of Escherichia coli YfcG Glutathione S-transferases and related uncharacterized proteins | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 111 VLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169
VL+ ++ S +L + ++ADI IW V L+ + N+ W++R++ P V
Sbjct: 51 VLDRRLAKSKYLAGDEYSIADIAIWPWVARH---EWQGIDLADFPNLKRWFERLAARPAV 107
Query: 170 QKA 172
QK
Sbjct: 108 QKG 110
|
Glutathione S-transferase (GST) C-terminal domain family, YfcG-like subfamily; composed of the Escherichia coli YfcG and related proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST active site is located in a cleft between the N- and C-terminal domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. YfcG is one of nine GST homologs in Escherichia coli. It is expressed predominantly during the late stationary phase where the predominant form of GSH is glutathionylspermidine (GspSH), suggesting that YfcG might interact with GspSH. It has very low or no GSH transferase or peroxidase activity, but displays a unique disulfide bond reductase activity that is comparable to thioredoxins (TRXs) and glutaredoxins (GRXs). However, unlike TRXs and GRXs, YfcG does not contain a redox active cysteine residue and may use a bound thiol disulfide couple such as 2GSH/GSSG for activity. The crystal structure of YcfG reveals a bound GSSG molecule in its active site. The actual physiological substrates for YfcG are yet to be identified. Length = 110 |
| >gnl|CDD|238605 cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 9e-05
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 921 EAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALT 963
+I +Q ++VR LKA K A + KLL+LK Q T
Sbjct: 1 YEKIAEQGDLVRKLKA-EKAPKEEIDAAVKKLLALKAQYKEAT 42
|
This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. Length = 42 |
| >gnl|CDD|214960 smart00991, WHEP-TRS, A conserved domain of 46 amino acids, called WHEP-TRS has been shown | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 1107 EAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
E + Q E+VR LKA K A +AKLL+LK QL TG
Sbjct: 1 EEAVAAQGELVRKLKA-EKASKDEIDAAVAKLLALKAQLKEATG 43
|
to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes. Length = 56 |
| >gnl|CDD|198286 cd00299, GST_C_family, C-terminal, alpha helical domain of the Glutathione S-transferase family | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 76 INQWLEWESVELFPSVLSFFDNPKVLP-----------DNLKTKLNVLNEAIS-NSFLIE 123
+ +W L P ++ KV + L L L + ++ +L
Sbjct: 1 VRALEDWADATLAPPLVRLLYLEKVPLPKDEAAVEAAREELPALLAALEQLLAGRPYLAG 60
Query: 124 NSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRI 163
+ ++AD+ + + L + LL Y + WYDR+
Sbjct: 61 DQFSLADVALAPVLARLEALGPYYDLLDEYPRLKAWYDRL 100
|
Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxins, stringent starvation protein A, and aminoacyl-tRNA synthetases. Length = 100 |
| >gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 278 PNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATET 337
++ I S PY + H+G++ ++ DV SR+ R+ N L+ G D +G E
Sbjct: 26 SSKPKYYILSMFPYPSGALHMGHVRNYTIT-DVLSRYYRMKGYNVLHPIGWDAFGLPAEN 84
Query: 338 KALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGF 395
A++ G+ P + + A ++ + +D+ T P+ + Q +F + + G
Sbjct: 85 AAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGL 144
Query: 396 TSSASVEQLHCAQCDRFLADRFV--EGVCPKCRYE 428
+ C LA+ V +G +
Sbjct: 145 AYVKEADVNWCPNDGTVLANEQVDSDGRSWRGDTP 179
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL 344
I PY + H+G++ + D+ +R+ R+ N L+ G D +G E A++ G
Sbjct: 4 ILVMFPYPSGALHVGHVRTYTI-GDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGR 62
Query: 345 TPRQICDKYFAIHREVYEW--FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVE 402
P + +E + F D+ T P+ + Q LF ++++ G
Sbjct: 63 DPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAP 122
Query: 403 QLHCAQCDRFLAD 415
C D++
Sbjct: 123 VNWCKLLDQWFLK 135
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-04
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 18/94 (19%)
Query: 984 HKIGTPAPLFRKIEQAQVDEWKLKY------GGQQNKESSNNKKEKKQAEITFSSVEELE 1037
H I LF +IE Q++ ++ +E I+F +++
Sbjct: 518 HPINKFKILFTRIEDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAETISFDDFAKVD 577
Query: 1038 AAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLK 1071
VA + V++ VE + DKLL L
Sbjct: 578 LRVA------KIVEAEKVEGA------DKLLKLT 599
|
Length = 673 |
| >gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 29/144 (20%)
Query: 276 PQPNEN--NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGT 333
P N N I P V H+G+ + + D+ +R+ R+ N L++ GTD G
Sbjct: 26 PDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQ-DIIARYKRMKGYNVLWLPGTDHAGI 84
Query: 334 ATETK----ALEEGLTPRQICDKYFAIHREVYEW----------------FEIDFD--YF 371
AT+ K EG T + + F +++EW +D+ F
Sbjct: 85 ATQVKVEKKLGAEGKTKHDLGREEFR--EKIWEWKEESGGTIKNQIKRLGASLDWSRERF 142
Query: 372 GRTSTPQQTEIVQHLFDRVHKAGF 395
T ++ V+ F R+++ G
Sbjct: 143 --TMDEGLSKAVKEAFVRLYEKGL 164
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|238605 cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domain | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 1107 EAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALT 1149
+I +Q ++VR LKA K A + KLL+LK Q T
Sbjct: 1 YEKIAEQGDLVRKLKA-EKAPKEEIDAAVKKLLALKAQYKEAT 42
|
This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. Length = 42 |
| >gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 846 SVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTS 905
++ E +AAV QGN VR +K+S +K+E ++KL +LK + A++ + +AA A
Sbjct: 8 ALAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSALEKELQAAVGAGGDG 67
Query: 906 ATPSASDNSADVKALE 921
A + A V LE
Sbjct: 68 AASKEAFRQAVVNTLE 83
|
Length = 684 |
| >gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 1032 SVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQTS 1091
++ E +AAV QGN VR +K+S +K+E ++KL +LK + A++ + +AA A
Sbjct: 8 ALAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSALEKELQAAVGAGGDG 67
Query: 1092 ATPSASDNSADVKALE 1107
A + A V LE
Sbjct: 68 AASKEAFRQAVVNTLE 83
|
Length = 684 |
| >gnl|CDD|198322 cd10289, GST_C_AaRS_like, Glutathione S-transferase C-terminal-like, alpha helical domain of various Aminoacyl-tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 77 NQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEA-ISNSFLIENSTTVADICIWT 135
Q +W ++L S+L L+ L LN S +FL+ S T+AD+ +++
Sbjct: 3 AQVDQW--LDLAGSLLKG--------KELEALLKSLNSYLASRTFLVGYSLTLADVAVFS 52
Query: 136 CVYPLLSDSKVRPLLSSYTNITPWYDRIS 164
+YP + + ++T W++ I
Sbjct: 53 ALYPSGQKLSDK-EKKKFPHVTRWFNHIQ 80
|
Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl-tRNA synthetase (AaRS)-like subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of some eukaryotic AaRSs, as well as similar domains found in proteins involved in protein synthesis including Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 2 (AIMP2), AIMP3, and eukaryotic translation Elongation Factor 1 beta (eEF1b). AaRSs comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. AaRSs in this subfamily include GluRS from lower eukaryotes, as well as GluProRS, MetRS, and CysRS from higher eukaryotes. AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex found in higher eukaryotes. The GST_C-like domain is involved in protein-protein interactions, mediating the formation of aaRS complexes such as the MetRS-Arc1p-GluRS ternary complex in lower eukaryotes and the multi-aaRS complex in higher eukaryotes, that act as molecular hubs for protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain. Length = 82 |
| >gnl|CDD|198342 cd10309, GST_C_GluProRS_N, Glutathione S-transferase C-terminal-like, alpha helical domain of bifunctional Glutamyl-Prolyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 92 LSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLL 150
+SF + + L+ L++A+S ++L+ NS T+AD +W + + +
Sbjct: 9 ISFSAGRLSCDQDFSSALSYLDKALSLRTYLVGNSLTLADFAVWAALR---GNGEWLASK 65
Query: 151 SSYTNITPWYDRISKL 166
Y N+T W+ IS
Sbjct: 66 EKYVNVTRWFKFISSQ 81
|
Glutathione S-transferase (GST) C-terminal domain family, bifunctional GluRS-Prolyl-tRNA synthetase (GluProRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of GluProRS from higher eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. The GST_C-like domain of GluProRS may be involved in protein-protein interactions, mediating the formation of the multi-aaRS complex in higher eukaryotes. The multi-aaRS complex acts as a molecular hub for protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain. Length = 81 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 17/168 (10%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL 344
+ PY + H+G++ + DV +R+ R+ N L+ G D +G E A++ G
Sbjct: 38 VLVMFPYPSGALHVGHVRNYTI-GDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGT 96
Query: 345 TPRQICDKYFAIHREVYEWFEIDFDY---FGRTSTPQQTEIVQHLFDRVHKAGFTSSASV 401
P + A ++ + D+ F T P+ + +Q F ++++ G
Sbjct: 97 DPAKWTYYNIAYMKKQLKSLGFSIDWRREF-ATCDPEYYKWIQWQFLKLYEKGLAYRKEA 155
Query: 402 EQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQ 449
C LA+ E C CG+ + EL Q
Sbjct: 156 PVNWCPVDGTVLAN------------EQVIDGGCWRCGEPVEIKELTQ 191
|
Length = 814 |
| >gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 982 SSHKIGTPAPLFRKIEQAQVDEWKLKYGGQQNKESSNNKKEKKQAEITFSSVEEL-EAAV 1040
+ HKIGTP PLF++++ +V+ ++ K+ G Q ++ + +A ++L + A+
Sbjct: 558 AGHKIGTPEPLFKELKDEEVEAYREKFAGSQADRAA-----RAEAAEAKKLAKQLKKKAL 612
Query: 1041 ATQGNLVRQVKSSGVEKS 1058
+ G + K+ G KS
Sbjct: 613 SDGGKKKQGKKAGGGGKS 630
|
Length = 801 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 50/227 (22%)
Query: 563 FHSIMFPATLVAAGDQYTK-VNHIMATEYLNYEDGKFSKSRGTGV--------FGNNAKD 613
FH +F LV + + K + M L E K SKS+G V +G
Sbjct: 547 FHKALFDEGLVPKDEPFKKLITQGMV---LGEEGEKMSKSKGNVVDPEEAVEKYG----- 598
Query: 614 TGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTI 673
AD R Y+++ P QD W + + F+ R + ++++ +
Sbjct: 599 ----ADTVRLYIMFAAPPEQD--LEWSE-------SGVEGARRFLQRVWNLVKEHLEKLV 645
Query: 674 PEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP--WVL 731
E++ + L++R + + R N M+ L
Sbjct: 646 EELTK-EQGKEDRWLLHRTIKKVTEDFEA-------RQTFN--TAIAALMELLNALRKYL 695
Query: 732 FKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778
+ ++K + + LL+P+ P A + +LG
Sbjct: 696 RRTEGDRKVLREALETWV--------RLLAPFAPHIAEELWEELGNE 734
|
Length = 814 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-04
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 33/196 (16%)
Query: 594 EDG-KFSKSRGTGV--------FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLAT 644
E G K SKS+G + +G AD RF L + +D +F + +
Sbjct: 521 EQGRKMSKSKGNVIDPLDVIDKYG---------ADALRFTLASLASPGRDINFDEKRV-- 569
Query: 645 KNNSELLNNLGNFINR-ALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKA 703
+ LN L N R L ++ + ++ D +L+ +N + LD
Sbjct: 570 EGYRNFLNKLWN-ATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNY 628
Query: 704 KLRDGIR----YILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLL 759
+ + R +I N +C+ Y++ +P L+ G E+++ +T L V L L
Sbjct: 629 RFDEAARALYEFIWND--FCDWYLELAKP-RLYGGEEEKRAARAT----LYYVLDTLLRL 681
Query: 760 LSPYMPSTASTIASQL 775
L P+MP I +L
Sbjct: 682 LHPFMPFITEEIWQKL 697
|
Length = 877 |
| >gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 37/193 (19%)
Query: 594 EDG-KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLN 652
E G K SKS G V + D ADI R ++ D FS + L K E+
Sbjct: 598 EKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVASSDYWE-DLRFSDEIL--KQVREVYR 653
Query: 653 NLGNFINRALSFIEKNYG------STIPEISPIHEDFLLLALIN---RELSAYYSVLDKA 703
+ N F+ N + D +L+ +N +E+ Y D
Sbjct: 654 KIRN----TYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYD-- 707
Query: 704 KLRDGIRYILNISRYCNQ-----YMQTQQP--WVLFKGSPEQKSRASTVLG-ILCQVSYL 755
+R ++N + ++ Y+ + + SP++++ A T L IL
Sbjct: 708 -FHKVVRALMN---FVSEDLSNWYLDIIKDRLYTEAADSPDRRA-AQTTLYHILKA---- 758
Query: 756 LSLLLSPYMPSTA 768
L LL+P +P TA
Sbjct: 759 LVRLLAPILPFTA 771
|
Length = 933 |
| >gnl|CDD|198287 cd03177, GST_C_Delta_Epsilon, C-terminal, alpha helical domain of Class Delta and Epsilon Glutathione S-transferases | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 76 INQWLEWESVELFPSVLSFFDNP----KVLPDNLKTKLNVLNEAIS--NSFLIE------ 123
+NQ L ++S L+ + ++ P+ KL EA+ +FL
Sbjct: 6 VNQRLFFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLE---EALEFLETFLEGSDYVAG 62
Query: 124 NSTTVADICIWTCVYPLLSDSKVRPL-LSSYTNITPWYDRISKLP 167
+ T+AD+ + V S +V LS Y N+ WY+R+ LP
Sbjct: 63 DQLTIADLSLVATV----STLEVVGFDLSKYPNVAAWYERLKALP 103
|
Glutathione S-transferase (GST) C-terminal domain family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress. Length = 117 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 29/129 (22%)
Query: 290 PYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQI 349
P V H+G+ + L D+ +R+ R+ N L+ GTD G AT+ +E+ L I
Sbjct: 42 PNVTGSLHMGHALNYTL-QDILARYKRMRGYNVLWPPGTDHAGIATQVV-VEKQLAAEGI 99
Query: 350 CDKYFAIHRE-----VYEWFE----------------IDFD--YFGRTSTPQQTEIVQHL 386
+ RE +EW E +D+ F T P + VQ
Sbjct: 100 --TRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERF--TMDPGLSRAVQEA 155
Query: 387 FDRVHKAGF 395
F R+++ G
Sbjct: 156 FVRLYEKGL 164
|
Length = 877 |
| >gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 26/197 (13%)
Query: 189 SLSEALFSLSIASQSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDDLSSKSKDVT 248
S AL S S + +L++ + A +++ ++ + A V ++KS D T
Sbjct: 5 RPSSALLSCSSIRRLNPLLLSACRRRAWAPRRAARRFCAAAASENDVFTSPETAKSFDFT 64
Query: 249 SEEIEQTKVAW-TQGSPVPLRTRTAP--VLPQPNENNILITSALPYVNNVPHLGNIIGCV 305
SEE + W +QG P R V+P P N +T +L H+G+ +
Sbjct: 65 SEE--RIYNWWESQGYFKPNFDRGGDPFVIPMPPPN---VTGSL-------HMGHAMFVT 112
Query: 306 LSADVFSRFCRLVNRNTLYVSGTDEYGTAT----ETKALEEGLTPRQICDKYFAIHREVY 361
L D+ R+ R+ R TL++ GTD G AT E EG+ + F + V+
Sbjct: 113 LE-DIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFT--KRVW 169
Query: 362 EWFEIDFDYFGRTSTPQ 378
EW E +G T T Q
Sbjct: 170 EWKE----KYGGTITNQ 182
|
Length = 958 |
| >gnl|CDD|238473 cd00936, WEPRS_RNA, WEPRS_RNA binding domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.003
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 920 LEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGT 965
L +I Q ++VR LKA K A + KLL+LK TG
Sbjct: 1 LYKKIAAQGDLVRELKA-KKAPKEEIDAAVKKLLALKADYKEATGQ 45
|
This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. Length = 50 |
| >gnl|CDD|238473 cd00936, WEPRS_RNA, WEPRS_RNA binding domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.004
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 854 VATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQ 887
+A QG+LVR++K+ K E V KLL+LK
Sbjct: 5 IAAQGDLVRELKAKKAPKEEIDAAVKKLLALKAD 38
|
This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. Length = 50 |
| >gnl|CDD|238473 cd00936, WEPRS_RNA, WEPRS_RNA binding domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.004
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1040 VATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQ 1073
+A QG+LVR++K+ K E V KLL+LK
Sbjct: 5 IAAQGDLVRELKAKKAPKEEIDAAVKKLLALKAD 38
|
This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. Length = 50 |
| >gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 24/127 (18%)
Query: 290 PYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE-GLTPRQ 348
P + H+G+ + L D+ R+ R+ + L+V G D +G TE K ++ G+ ++
Sbjct: 32 PNATGLLHIGHALNKTLK-DIVIRYKRMQGFDVLWVPGWDHHGLPTEQKVEKKLGIKGKK 90
Query: 349 ICDKYF--AIHREVYEWFE----------------IDFD--YFGRTSTPQQTEIVQHLFD 388
K + EW D+D YF T P V +F
Sbjct: 91 DRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYF--TLDPGLEAAVWRVFV 148
Query: 389 RVHKAGF 395
R+H G
Sbjct: 149 RLHDKGL 155
|
Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1175 | |||
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 100.0 | |
| KOG1247|consensus | 567 | 100.0 | ||
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 100.0 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 100.0 | |
| PLN02224 | 616 | methionine-tRNA ligase | 100.0 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 100.0 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 100.0 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 100.0 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 100.0 | |
| KOG0436|consensus | 578 | 100.0 | ||
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 100.0 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 100.0 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 100.0 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 100.0 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 100.0 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 100.0 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 100.0 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 100.0 | |
| KOG0432|consensus | 995 | 100.0 | ||
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 100.0 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 100.0 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 100.0 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 100.0 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 100.0 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 100.0 | |
| KOG0434|consensus | 1070 | 100.0 | ||
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 100.0 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 100.0 | |
| KOG0435|consensus | 876 | 100.0 | ||
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 100.0 | |
| KOG0433|consensus | 937 | 100.0 | ||
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 100.0 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 100.0 | |
| KOG0437|consensus | 1080 | 100.0 | ||
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 100.0 | |
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 100.0 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 100.0 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 100.0 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 100.0 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 100.0 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 100.0 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 100.0 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 99.97 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 99.97 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 99.97 | |
| KOG2007|consensus | 586 | 99.97 | ||
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.95 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 99.92 | |
| KOG1147|consensus | 712 | 99.92 | ||
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 99.91 | |
| PLN02286 | 576 | arginine-tRNA ligase | 99.89 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 99.89 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.88 | |
| PRK09481 | 211 | sspA stringent starvation protein A; Provisional | 99.87 | |
| PLN02473 | 214 | glutathione S-transferase | 99.87 | |
| PRK10542 | 201 | glutathionine S-transferase; Provisional | 99.87 | |
| PRK13972 | 215 | GSH-dependent disulfide bond oxidoreductase; Provi | 99.87 | |
| PLN02395 | 215 | glutathione S-transferase | 99.84 | |
| PRK10357 | 202 | putative glutathione S-transferase; Provisional | 99.84 | |
| PRK15113 | 214 | glutathione S-transferase; Provisional | 99.83 | |
| COG0625 | 211 | Gst Glutathione S-transferase [Posttranslational m | 99.83 | |
| PRK11752 | 264 | putative S-transferase; Provisional | 99.83 | |
| TIGR01262 | 210 | maiA maleylacetoacetate isomerase. Maleylacetoacet | 99.81 | |
| KOG0406|consensus | 231 | 99.81 | ||
| KOG0867|consensus | 226 | 99.8 | ||
| PRK10387 | 210 | glutaredoxin 2; Provisional | 99.79 | |
| PTZ00057 | 205 | glutathione s-transferase; Provisional | 99.78 | |
| KOG0868|consensus | 217 | 99.78 | ||
| cd07957 | 129 | Anticodon_Ia_Met Anticodon-binding domain of methi | 99.75 | |
| PLN02378 | 213 | glutathione S-transferase DHAR1 | 99.74 | |
| PLN02817 | 265 | glutathione dehydrogenase (ascorbate) | 99.72 | |
| TIGR02182 | 209 | GRXB Glutaredoxin, GrxB family. This model include | 99.7 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 99.69 | |
| TIGR00862 | 236 | O-ClC intracellular chloride channel protein. Thes | 99.69 | |
| KOG1695|consensus | 206 | 99.68 | ||
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 99.65 | |
| cd07959 | 117 | Anticodon_Ia_Leu_AEc Anticodon-binding domain of a | 99.65 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 99.64 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 99.61 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 99.61 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 99.57 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 99.54 | |
| KOG4420|consensus | 325 | 99.53 | ||
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 99.52 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 99.51 | |
| cd07958 | 117 | Anticodon_Ia_Leu_BEm Anticodon-binding domain of b | 99.51 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 99.51 | |
| cd07960 | 180 | Anticodon_Ia_Ile_BEm Anticodon-binding domain of b | 99.51 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 99.49 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 99.48 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 99.48 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 99.47 | |
| cd07962 | 135 | Anticodon_Ia_Val Anticodon-binding domain of valyl | 99.47 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 99.47 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 99.46 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 99.45 | |
| cd00939 | 45 | MetRS_RNA MetRS_RNA binding domain. This short RNA | 99.45 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 99.44 | |
| cd07961 | 183 | Anticodon_Ia_Ile_ABEc Anticodon-binding domain of | 99.43 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 99.43 | |
| cd00939 | 45 | MetRS_RNA MetRS_RNA binding domain. This short RNA | 99.41 | |
| PF00458 | 56 | WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A c | 99.41 | |
| PF08264 | 153 | Anticodon_1: Anticodon-binding domain of tRNA; Int | 99.4 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 99.39 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 99.38 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 99.37 | |
| PF00458 | 56 | WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A c | 99.36 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 99.35 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 99.24 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 99.23 | |
| cd00938 | 45 | HisRS_RNA HisRS_RNA binding domain. This short RNA | 99.19 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 99.18 | |
| cd00938 | 45 | HisRS_RNA HisRS_RNA binding domain. This short RNA | 99.16 | |
| cd07375 | 117 | Anticodon_Ia_like Anticodon-binding domain of clas | 99.15 | |
| KOG1422|consensus | 221 | 99.14 | ||
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 99.13 | |
| KOG4426|consensus | 656 | 99.12 | ||
| cd03196 | 115 | GST_C_5 GST_C family, unknown subfamily 5; compose | 99.12 | |
| cd03045 | 74 | GST_N_Delta_Epsilon GST_N family, Class Delta and | 99.11 | |
| cd03052 | 73 | GST_N_GDAP1 GST_N family, Ganglioside-induced diff | 99.11 | |
| KOG3029|consensus | 370 | 99.1 | ||
| cd03037 | 71 | GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub | 99.1 | |
| cd03060 | 71 | GST_N_Omega_like GST_N family, Omega-like subfamil | 99.1 | |
| cd03051 | 74 | GST_N_GTT2_like GST_N family, Saccharomyces cerevi | 99.09 | |
| cd00936 | 50 | WEPRS_RNA WEPRS_RNA binding domain. This short RNA | 99.09 | |
| KOG1149|consensus | 524 | 99.07 | ||
| cd03049 | 73 | GST_N_3 GST_N family, unknown subfamily 3; compose | 99.06 | |
| COG2999 | 215 | GrxB Glutaredoxin 2 [Posttranslational modificatio | 99.06 | |
| cd00936 | 50 | WEPRS_RNA WEPRS_RNA binding domain. This short RNA | 99.05 | |
| cd03044 | 75 | GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo | 99.05 | |
| cd03047 | 73 | GST_N_2 GST_N family, unknown subfamily 2; compose | 99.02 | |
| cd03056 | 73 | GST_N_4 GST_N family, unknown subfamily 4; compose | 99.01 | |
| cd03041 | 77 | GST_N_2GST_N GST_N family, 2 repeats of the N-term | 99.01 | |
| cd03050 | 76 | GST_N_Theta GST_N family, Class Theta subfamily; c | 98.99 | |
| PF13417 | 75 | GST_N_3: Glutathione S-transferase, N-terminal dom | 98.99 | |
| cd03039 | 72 | GST_N_Sigma_like GST_N family, Class Sigma_like; c | 98.99 | |
| cd03059 | 73 | GST_N_SspA GST_N family, Stringent starvation prot | 98.99 | |
| cd03058 | 74 | GST_N_Tau GST_N family, Class Tau subfamily; GSTs | 98.98 | |
| cd03076 | 73 | GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar | 98.98 | |
| cd03053 | 76 | GST_N_Phi GST_N family, Class Phi subfamily; compo | 98.97 | |
| cd03188 | 114 | GST_C_Beta GST_C family, Class Beta subfamily; GST | 98.97 | |
| cd03055 | 89 | GST_N_Omega GST_N family, Class Omega subfamily; G | 98.95 | |
| PF02798 | 76 | GST_N: Glutathione S-transferase, N-terminal domai | 98.94 | |
| cd03057 | 77 | GST_N_Beta GST_N family, Class Beta subfamily; GST | 98.94 | |
| cd03186 | 107 | GST_C_SspA GST_N family, Stringent starvation prot | 98.94 | |
| COG0435 | 324 | ECM4 Predicted glutathione S-transferase [Posttran | 98.93 | |
| cd03048 | 81 | GST_N_Ure2p_like GST_N family, Ure2p-like subfamil | 98.93 | |
| cd03040 | 77 | GST_N_mPGES2 GST_N family; microsomal Prostaglandi | 98.92 | |
| cd03185 | 126 | GST_C_Tau GST_C family, Class Tau subfamily; GSTs | 98.91 | |
| cd03189 | 119 | GST_C_GTT1_like GST_C family, Saccharomyces cerevi | 98.9 | |
| cd03042 | 73 | GST_N_Zeta GST_N family, Class Zeta subfamily; GST | 98.9 | |
| cd03178 | 113 | GST_C_Ure2p_like GST_C family, Ure2p-like subfamil | 98.9 | |
| cd03187 | 118 | GST_C_Phi GST_C family, Class Phi subfamily; compo | 98.89 | |
| cd03190 | 142 | GST_C_ECM4_like GST_C family, ECM4-like subfamily; | 98.89 | |
| cd03177 | 118 | GST_C_Delta_Epsilon GST_C family, Class Delta and | 98.87 | |
| cd03077 | 79 | GST_N_Alpha GST_N family, Class Alpha subfamily; G | 98.86 | |
| cd03200 | 96 | GST_C_JTV1 GST_C family, JTV-1 subfamily; composed | 98.86 | |
| cd03182 | 117 | GST_C_GTT2_like GST_C family, Saccharomyces cerevi | 98.83 | |
| cd03181 | 123 | GST_C_EFB1gamma GST_C family, Gamma subunit of Elo | 98.81 | |
| cd03075 | 82 | GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar | 98.81 | |
| cd03046 | 76 | GST_N_GTT1_like GST_N family, Saccharomyces cerevi | 98.81 | |
| KOG1195|consensus | 567 | 98.79 | ||
| cd03180 | 110 | GST_C_2 GST_C family, unknown subfamily 2; compose | 98.78 | |
| cd03191 | 121 | GST_C_Zeta GST_C family, Class Zeta subfamily; GST | 98.78 | |
| PF13409 | 70 | GST_N_2: Glutathione S-transferase, N-terminal dom | 98.78 | |
| cd03207 | 103 | GST_C_8 GST_C family, unknown subfamily 8; compose | 98.77 | |
| cd03080 | 75 | GST_N_Metaxin_like GST_N family, Metaxin subfamily | 98.76 | |
| cd03203 | 120 | GST_C_Lambda GST_C family, Class Lambda subfamily; | 98.76 | |
| cd03061 | 91 | GST_N_CLIC GST_N family, Chloride Intracellular Ch | 98.75 | |
| KOG4244|consensus | 281 | 98.74 | ||
| cd03183 | 126 | GST_C_Theta GST_C family, Class Theta subfamily; c | 98.74 | |
| cd00570 | 71 | GST_N_family Glutathione S-transferase (GST) famil | 98.72 | |
| cd03038 | 84 | GST_N_etherase_LigE GST_N family, Beta etherase Li | 98.66 | |
| cd03054 | 72 | GST_N_Metaxin GST_N family, Metaxin subfamily; com | 98.65 | |
| cd03206 | 100 | GST_C_7 GST_C family, unknown subfamily 7; compose | 98.65 | |
| cd03184 | 124 | GST_C_Omega GST_C family, Class Omega subfamily; G | 98.64 | |
| cd03043 | 73 | GST_N_1 GST_N family, unknown subfamily 1; compose | 98.64 | |
| cd03198 | 134 | GST_C_CLIC GST_C family, Chloride Intracellular Ch | 98.61 | |
| cd03209 | 121 | GST_C_Mu GST_C family, Class Mu subfamily; GSTs ar | 98.59 | |
| KOG2903|consensus | 319 | 98.59 | ||
| cd03195 | 114 | GST_C_4 GST_C family, unknown subfamily 4; compose | 98.58 | |
| PF00043 | 95 | GST_C: Glutathione S-transferase, C-terminal domai | 98.56 | |
| PF14497 | 99 | GST_C_3: Glutathione S-transferase, C-terminal dom | 98.52 | |
| cd03201 | 121 | GST_C_DHAR GST_C family, Dehydroascorbate Reductas | 98.52 | |
| cd03179 | 105 | GST_C_1 GST_C family, unknown subfamily 1; compose | 98.52 | |
| cd03210 | 126 | GST_C_Pi GST_C family, Class Pi subfamily; GSTs ar | 98.48 | |
| cd03208 | 137 | GST_C_Alpha GST_C family, Class Alpha subfamily; G | 98.48 | |
| cd03204 | 111 | GST_C_GDAP1 GST_C family, Ganglioside-induced diff | 98.47 | |
| PF13410 | 69 | GST_C_2: Glutathione S-transferase, C-terminal dom | 98.44 | |
| cd03194 | 114 | GST_C_3 GST_C family, unknown subfamily 3; compose | 98.35 | |
| cd03079 | 74 | GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me | 98.33 | |
| KOG1148|consensus | 764 | 98.29 | ||
| cd01200 | 42 | WHEPGMRS_RNA EPRS-like_RNA binding domain. This sh | 98.27 | |
| cd01200 | 42 | WHEPGMRS_RNA EPRS-like_RNA binding domain. This sh | 98.24 | |
| cd00299 | 100 | GST_C_family Glutathione S-transferase (GST) famil | 98.18 | |
| cd03193 | 88 | GST_C_Metaxin GST_C family, Metaxin subfamily; com | 98.14 | |
| cd03202 | 124 | GST_C_etherase_LigE GST_C family, Beta etherase Li | 98.06 | |
| KOG3027|consensus | 257 | 97.99 | ||
| cd03197 | 149 | GST_C_mPGES2 GST_C family; microsomal Prostaglandi | 97.93 | |
| cd03192 | 104 | GST_C_Sigma_like GST_C family, Class Sigma_like; c | 97.92 | |
| KOG3028|consensus | 313 | 97.85 | ||
| cd03205 | 98 | GST_C_6 GST_C family, unknown subfamily 6; compose | 97.83 | |
| cd03078 | 73 | GST_N_Metaxin1_like GST_N family, Metaxin subfamil | 97.72 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 97.52 | |
| cd07956 | 156 | Anticodon_Ia_Arg Anticodon-binding domain of argin | 97.45 | |
| cd03211 | 126 | GST_C_Metaxin2 GST_C family, Metaxin subfamily, Me | 97.34 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 97.31 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 97.29 | |
| cd03212 | 137 | GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, | 97.27 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 97.24 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 97.18 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 97.16 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 97.07 | |
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 96.99 | |
| KOG1247|consensus | 567 | 96.98 | ||
| cd00935 | 51 | GlyRS_RNA GlyRS_RNA binding domain. This short RNA | 96.9 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 96.82 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 96.82 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 96.72 | |
| cd00935 | 51 | GlyRS_RNA GlyRS_RNA binding domain. This short RNA | 96.58 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 96.52 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 96.29 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 96.24 | |
| PF14834 | 117 | GST_C_4: Glutathione S-transferase, C-terminal dom | 96.23 | |
| PF10568 | 72 | Tom37: Outer mitochondrial membrane transport comp | 96.07 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 96.01 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 95.99 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 95.79 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 95.75 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 95.59 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 95.51 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 95.35 | |
| KOG1936|consensus | 518 | 94.69 | ||
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 94.44 | |
| COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosom | 94.36 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 93.85 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 93.71 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 93.53 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 93.52 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 92.7 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 91.94 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 91.91 | |
| PF05746 | 119 | DALR_1: DALR anticodon binding domain; InterPro: I | 91.78 | |
| PF09635 | 122 | MetRS-N: MetRS-N binding domain; InterPro: IPR0182 | 91.1 | |
| PF04399 | 132 | Glutaredoxin2_C: Glutaredoxin 2, C terminal domain | 90.18 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 89.46 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 89.02 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 88.86 | |
| cd03199 | 128 | GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) sub | 88.17 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 88.08 | |
| PLN02734 | 684 | glycyl-tRNA synthetase | 87.78 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 87.27 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 86.97 | |
| PRK14714 | 1337 | DNA polymerase II large subunit; Provisional | 86.76 | |
| PF01927 | 147 | Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T | 85.32 | |
| PLN02734 | 684 | glycyl-tRNA synthetase | 82.71 | |
| cd03031 | 147 | GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d | 80.82 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 80.79 |
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-117 Score=1043.83 Aligned_cols=531 Identities=39% Similarity=0.679 Sum_probs=498.6
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
.++|+||+|+|||||.|||||++ .+|++|+++||+||+|++|+|++|+|+||+||+.+|+++|++|+++|+++++.|++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~-~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~ 82 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLY-TYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKE 82 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHH-HHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999 67789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
+|++|+|+||.|.||+++.|.++||++|.+|+++|+||.+.++++||+.|++||+|+||+|+||.|++++++||+||+||
T Consensus 83 ~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg 162 (558)
T COG0143 83 LFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCG 162 (558)
T ss_pred HHHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-CCCchHHHHHHHHhhcCCCcEeeec-cCCCC
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITR-DLKWG 517 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~wl~~~l~dw~ISR-~~~WG 517 (1175)
+.++|.++++|+|++||+++++|.++||||+|+++++.|++|+++++. .||++.++++.+|+++||+|||||| +++||
T Consensus 163 ~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WG 242 (558)
T COG0143 163 RTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWG 242 (558)
T ss_pred CcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCC
Confidence 999999999999999999999999999999999999999999999864 3899999999999999999999999 99999
Q ss_pred cccCCCCCCCce--EEecCc-----------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCC
Q psy7266 518 IPVPLPGFENKY--SLSSSP-----------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ 578 (1175)
Q Consensus 518 ~piP~~~~e~~v--vWfds~-----------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~ 578 (1175)
+||| +.+++| |||||+ .|.+||+++ +++++|||||||++||+++|||||++++
T Consensus 243 ipvP--~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~----~~e~vhfIGKDii~FHav~wPamL~~~~-- 314 (558)
T COG0143 243 IPVP--GDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD----DTELVHFIGKDIIRFHAVYWPAMLMAAG-- 314 (558)
T ss_pred ccCC--CCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC----CceEEEEeccccCcchhhHHHHHHHhCC--
Confidence 9999 557888 999998 468899985 7889999999999999999999999997
Q ss_pred cccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHH
Q psy7266 579 YTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFI 658 (1175)
Q Consensus 579 ~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~ 658 (1175)
.++|+.|++||||+++|+|||||+||+|+|.++++. ||+|+|||||++..|+++|.+|+|++|.+++|++|+|++||++
T Consensus 315 ~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~ 393 (558)
T COG0143 315 LPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLA 393 (558)
T ss_pred CCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHH-cCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999997 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCC--CChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCCh
Q psy7266 659 NRALSFIEKNYGSTIPEIS--PIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSP 736 (1175)
Q Consensus 659 ~r~~~~~~~~~~~~~p~~~--~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~ 736 (1175)
+|+++|+.+++++.+|... ..+.|..++..+..+...+.++|+.++|++|++.|++|++.+|.|++..+||.+.|+
T Consensus 394 ~R~~~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~-- 471 (558)
T COG0143 394 NRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKE-- 471 (558)
T ss_pred HHHHHHHHhccCCcCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhcc--
Confidence 9999999999999998753 126889999999999999999999999999999999999999999999999999986
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchhhhH
Q psy7266 737 EQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQVD 816 (1175)
Q Consensus 737 ~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~~ie 816 (1175)
..++++.+++++++++++.+++||+||||.+|++||++||.+.... ..........+.+||.++++++||+||+.++++
T Consensus 472 ~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~lF~ri~~~~~~ 550 (558)
T COG0143 472 DKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDAR-NFTWLGARQPLLPGHKLGPPEPLFPRIEEEAIE 550 (558)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccc-cchhhhhccccCCCcccCCcccCccccCHHHHH
Confidence 3467899999999999999999999999999999999999875332 111222333567899999999999999999999
Q ss_pred HHHHHhc
Q psy7266 817 EWKLKYG 823 (1175)
Q Consensus 817 ~~~~~~~ 823 (1175)
++.+...
T Consensus 551 ~~~~~~~ 557 (558)
T COG0143 551 ELIEALK 557 (558)
T ss_pred HHHHhhc
Confidence 9886653
|
|
| >KOG1247|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-118 Score=958.32 Aligned_cols=546 Identities=55% Similarity=1.020 Sum_probs=526.7
Q ss_pred CCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHH
Q psy7266 272 APVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICD 351 (1175)
Q Consensus 272 ~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~ 351 (1175)
.+.+|.+++++++||++.||+|..+|+|++.++++++||+|||++.+|++.+|+||||++|+++|.+|.++|++|+++|+
T Consensus 5 ~~ilp~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcd 84 (567)
T KOG1247|consen 5 DPILPAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCD 84 (567)
T ss_pred CCcccCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCC
Q psy7266 352 KYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDAR 431 (1175)
Q Consensus 352 ~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~ 431 (1175)
+|+..|...++|++|+||.|+||+++.+.+++|++|.+|+++|+..+.+..+.||..|+++|+|++|+|+||.|+|+++|
T Consensus 85 Kyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~AR 164 (567)
T KOG1247|consen 85 KYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDAR 164 (567)
T ss_pred hcchhHHHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcC--CCCCchHHHHHHHHhhcCCCcEe
Q psy7266 432 GDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETS--DQWSSNARVICKAWLKDGLKPRC 509 (1175)
Q Consensus 432 G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~--~~~~~~~~~~~~~wl~~~l~dw~ 509 (1175)
|++|++||+++++.++..|+|..|...++++.+.|.||.|+++++++.+|+++.. ..|.+++++++++||++||+++|
T Consensus 165 GDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRC 244 (567)
T KOG1247|consen 165 GDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRC 244 (567)
T ss_pred chhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccc
Confidence 9999999999999999999999999999999999999999999999999999865 46999999999999999999999
Q ss_pred eeccCCCCcccCCCCCCCce--EEecCc------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHh
Q psy7266 510 ITRDLKWGIPVPLPGFENKY--SLSSSP------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAA 575 (1175)
Q Consensus 510 ISR~~~WG~piP~~~~e~~v--vWfds~------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~ 575 (1175)
|||++.||+|||..+++++| |||||+ +|++||.++ ++|++++|||||+++||+++||++++++
T Consensus 245 iTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknp---E~v~LyqFmgKDNVpFHtviFP~s~lgt 321 (567)
T KOG1247|consen 245 ITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNP---ENVELYQFMGKDNVPFHTVIFPCSQLGT 321 (567)
T ss_pred cccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCH---hhhhHHHHhccCCCcceeeecchhhhcC
Confidence 99999999999999999999 999998 899999998 8999999999999999999999999999
Q ss_pred CCCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHH
Q psy7266 576 GDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLG 655 (1175)
Q Consensus 576 ~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~ 655 (1175)
+.++++.+++.+++||+++++|||||||.+|+++++.+.|+++++|||||++.+|+++|+.|+|++|..++|++|+||+|
T Consensus 322 ~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLG 401 (567)
T KOG1247|consen 322 EENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLG 401 (567)
T ss_pred CCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCC
Q psy7266 656 NFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGS 735 (1175)
Q Consensus 656 n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~ 735 (1175)
||+||+++|+...+++.+|...+...|..+++.++.++.++..+||..++++|++.+|++++.+|+|||.++.|.+..
T Consensus 402 NFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~~k~~~-- 479 (567)
T KOG1247|consen 402 NFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTDNKLYE-- 479 (567)
T ss_pred HHHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcccccchhh--
Confidence 999999999999999999998887789999999999999999999999999999999999999999999999776654
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchhhh
Q psy7266 736 PEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQV 815 (1175)
Q Consensus 736 ~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~~i 815 (1175)
.+++++++++.+.++++..++.||+||||.++.+|+.|||++.. ...+.++..|++||+||+|.|||++||.++|
T Consensus 480 -~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~----~~~~~~~~~l~~gH~ig~~~pLFq~l~~~qi 554 (567)
T KOG1247|consen 480 -ESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPET----LFPDRFICRLLAGHRIGTPSPLFQKLDEDQI 554 (567)
T ss_pred -hcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCccc----cCCCccceeecCcCccCCccHHHHhcCHHHH
Confidence 46778999999999999999999999999999999999999854 3356677889999999999999999999999
Q ss_pred HHHHHHhcCccC
Q psy7266 816 DEWKLKYGGQQN 827 (1175)
Q Consensus 816 e~~~~~~~g~~~ 827 (1175)
++||++|+|+|.
T Consensus 555 ee~r~k~gg~q~ 566 (567)
T KOG1247|consen 555 EEWRAKFGGQQS 566 (567)
T ss_pred HHHHHhhcCCCC
Confidence 999999999884
|
|
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-114 Score=1073.32 Aligned_cols=548 Identities=53% Similarity=0.976 Sum_probs=505.6
Q ss_pred CCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHH
Q psy7266 273 PVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDK 352 (1175)
Q Consensus 273 ~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~ 352 (1175)
.++|.+++++|+||+|+|||||.|||||+++++|++|+++||+||+|++|+|++|||+||+||+.+|++.|++|+++|++
T Consensus 9 ~~~~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~ 88 (801)
T PLN02610 9 PKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDK 88 (801)
T ss_pred CcCCCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHH
Confidence 46788889999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCC--ccccCC
Q psy7266 353 YFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPK--CRYEDA 430 (1175)
Q Consensus 353 ~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~--c~~~d~ 430 (1175)
|++.|+++|++|||++|.|+||+++.|.+.||++|.+|+++|+||++.+.++||+.|++||+|++|+|+||. |+++++
T Consensus 89 ~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a 168 (801)
T PLN02610 89 YHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSA 168 (801)
T ss_pred HHHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcC--CCCCchHHHHHHHHhhcCCCcE
Q psy7266 431 RGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETS--DQWSSNARVICKAWLKDGLKPR 508 (1175)
Q Consensus 431 ~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~--~~~~~~~~~~~~~wl~~~l~dw 508 (1175)
+|++||.||+.+++.+|++|+|.+||++++.+.++||||+|++|+++|.+|+++.. ..|+++.+.++.+||+++|+||
T Consensus 169 ~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~ 248 (801)
T PLN02610 169 RGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPR 248 (801)
T ss_pred ccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999998753 2488888888899999999999
Q ss_pred eeeccCCCCcccCCCCCCCce--EEecCc------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHH
Q psy7266 509 CITRDLKWGIPVPLPGFENKY--SLSSSP------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVA 574 (1175)
Q Consensus 509 ~ISR~~~WG~piP~~~~e~~v--vWfds~------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~ 574 (1175)
||||++.||||||.++.+++| |||||+ .|..||+.+ .+++++|||||||++||+++|||||++
T Consensus 249 ~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~---~~~~~~hfiGKDi~~fH~i~wPa~L~a 325 (801)
T PLN02610 249 CITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNP---ENVELYQFMGKDNVPFHTVMFPSTLLG 325 (801)
T ss_pred ceeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCc---ccceEEEEEeeecchhHHHHHHHHHHh
Confidence 999999999999999888888 999998 467899875 468889999999999999999999999
Q ss_pred hCCCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHH
Q psy7266 575 AGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNL 654 (1175)
Q Consensus 575 ~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l 654 (1175)
++.++++|++|++||||+++|+|||||+||+|+|.++++.+||+|+|||||++.++.++|.+|+|++|.+++|++|+|++
T Consensus 326 ~g~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~l 405 (801)
T PLN02610 326 TGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNL 405 (801)
T ss_pred CCCCcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 99878899999999999999999999999999999999855999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----HhcCCCCCCCC---CChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 655 GNFINRALSFIE----KNYGSTIPEIS---PIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 655 ~n~~~r~~~~~~----~~~~~~~p~~~---~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
||+++|++.|+. +++++.+|... ....|.||+++++.+++.+.++|++|+|+.|++.|++|++++|+||+..+
T Consensus 406 GNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~k 485 (801)
T PLN02610 406 GNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 485 (801)
T ss_pred HHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998 56888887532 34568999999999999999999999999999999999999999999999
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCC-----CC--ccccCCCCCCcc
Q psy7266 728 PWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSS-----SP--SLVQFLPTGHKI 800 (1175)
Q Consensus 728 pw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~-----~~--~~~~~l~~Gh~i 800 (1175)
||.+.+++ ..++.+++++++++++.+++||+||||++|++||++||++........ .. ..+..++.||.|
T Consensus 486 PW~L~k~d---~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 562 (801)
T PLN02610 486 FWKLYKED---KPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPESLSLSDEKGEVARAKRPWELVPAGHKI 562 (801)
T ss_pred chhhhCCC---HHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCcccccchhccccccccccccccCCCCCCC
Confidence 99998753 346788999999999999999999999999999999998643210000 00 011346789999
Q ss_pred CCCCCCccccchhhhHHHHHHhcCcc
Q psy7266 801 GTPAPLFRKIEQAQVDEWKLKYGGQQ 826 (1175)
Q Consensus 801 ~~p~~LF~ki~~~~ie~~~~~~~g~~ 826 (1175)
+++.+||+||+.++++.+.+++.+.+
T Consensus 563 ~~~~~lF~ri~~~~~~~~~~~~~~~~ 588 (801)
T PLN02610 563 GTPEPLFKELKDEEVEAYREKFAGSQ 588 (801)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhccch
Confidence 99999999999999999888887754
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-103 Score=979.55 Aligned_cols=524 Identities=31% Similarity=0.577 Sum_probs=483.6
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREV 360 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~ 360 (1175)
++|+||+|||||||.|||||+++.++ +|+++||+||+|++|+|++|||+||+||+.+|++.|++|.++|++|++.|+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~-aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQ-ADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHH-HHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999997555 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCC
Q psy7266 361 YEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 361 ~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
|+.|||++|+|.+|++++|.+.|+++|.+|+++|+||++++.++||+.|++||+|++|+|+||.|++.|++|++|+.||.
T Consensus 81 ~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~ 160 (673)
T PRK00133 81 FAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGA 160 (673)
T ss_pred HHHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCC-Ccc
Q psy7266 441 LINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKW-GIP 519 (1175)
Q Consensus 441 ~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~W-G~p 519 (1175)
.+++.++++|+|.+||++++++.++||||+|+++++.|.+++++.. .||+++++.+.+||+++|.||||||+++| |||
T Consensus 161 ~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~Gip 239 (673)
T PRK00133 161 TYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG-ELQPNVANKMKEWLEEGLQDWDISRDAPYFGFE 239 (673)
T ss_pred cCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhCCCcccceeeeCCccceE
Confidence 9999999999999999999999999999999999999999997644 49999999999999989999999999999 999
Q ss_pred cCCCCCCCce--EEecCc--------c---------ccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcc
Q psy7266 520 VPLPGFENKY--SLSSSP--------S---------LVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYT 580 (1175)
Q Consensus 520 iP~~~~e~~v--vWfds~--------~---------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~ 580 (1175)
||. .+++| ||||++ + |..||+.+ .+++++||+|+||++||+++|||++++.+ ++
T Consensus 240 vP~--~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~---~~~~~v~~iGkDi~~fH~i~wpa~l~a~g--~~ 312 (673)
T PRK00133 240 IPG--APGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKD---SDTELYHFIGKDIIYFHTLFWPAMLEGAG--YR 312 (673)
T ss_pred CCC--CCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCC---CCceEEEEEeecchhHHHHHHHHHHHhCC--CC
Confidence 994 46676 999997 1 45689543 45778999999999999999999999975 78
Q ss_pred cCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCC-CCccccHHHHHHHhhHHHHHHHHHHHH
Q psy7266 581 KVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPEN-QDTSFSWQDLATKNNSELLNNLGNFIN 659 (1175)
Q Consensus 581 ~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~-~D~~f~~~~~~~~~n~~l~~~l~n~~~ 659 (1175)
+|++|++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++.++.+ +|.+|+|+.+..+.|++|+++++|+++
T Consensus 313 lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~-ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~ 391 (673)
T PRK00133 313 LPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDH-LDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFAS 391 (673)
T ss_pred CCCEEeeeccEEecCCcccccCCcccCHHHHHHH-cCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999997 99999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhH
Q psy7266 660 RALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQK 739 (1175)
Q Consensus 660 r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~ 739 (1175)
|+.+++.+++++.+| ..+.|+|+++.++.++..+.++|++|+|+.|++.+++|++++|+|++..+||.+.++ +.
T Consensus 392 R~~~~~~k~~~~~~~---~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~~~~---~~ 465 (673)
T PRK00133 392 RTAGFINKRFDGKLP---DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAKQ---DG 465 (673)
T ss_pred HHHHHHHHhcCCCCC---CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhhhcC---CH
Confidence 999999888876655 245699999999999999999999999999999999999999999999999987764 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchhhhHHHH
Q psy7266 740 SRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQVDEWK 819 (1175)
Q Consensus 740 ~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~~ie~~~ 819 (1175)
+++.+++++++++++.+++||+|||||+|++||++||.+...+ ..+ ..+..||.|+++++||+||+.++++++.
T Consensus 466 ~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~~~~~-----~~~-~~~~~g~~~~~~~~lf~~~~~~~~~~~~ 539 (673)
T PRK00133 466 ERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEELTW-----DDA-QQPLAGHPINKFKILFTRIEDKQIEALI 539 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCCccCh-----hhh-cCCCCCCCcCCCCcCCcCCCHHHHHHHH
Confidence 4677899999999999999999999999999999999863222 111 1244799999999999999999999998
Q ss_pred HHhcCcc
Q psy7266 820 LKYGGQQ 826 (1175)
Q Consensus 820 ~~~~g~~ 826 (1175)
+++++.+
T Consensus 540 ~~~~~~~ 546 (673)
T PRK00133 540 EASKEAA 546 (673)
T ss_pred HHhhcch
Confidence 8887755
|
|
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-101 Score=944.62 Aligned_cols=534 Identities=41% Similarity=0.756 Sum_probs=486.3
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
.++|+||+|||||||.|||||+++.++.+|+++||+||+|++|+|++|+|+||++|+.+|++.|++|.++|++|.+.|.+
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999983459999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
++++|||++|++.+|++++|.+.++++|.+|+++|+||++.++++||+.|+++|+|++|.|+||.|+..+.+|++||.||
T Consensus 82 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg 161 (556)
T PRK12268 82 DFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCG 161 (556)
T ss_pred HHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcc
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIP 519 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~p 519 (1175)
..+++.++++|+|++||++++++.++||||+++++++.+.+++++. ..||+..++++.+||+++++|||||||++||+|
T Consensus 162 ~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~-~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGip 240 (556)
T PRK12268 162 ALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESS-GDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIP 240 (556)
T ss_pred ccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHhCCCCCcCceeeCCCCee
Confidence 9999999999999999999999999999999999999999999854 368999999999999669999999999999999
Q ss_pred cCCCCCCCce--EEecCc--------c----------ccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCc
Q psy7266 520 VPLPGFENKY--SLSSSP--------S----------LVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQY 579 (1175)
Q Consensus 520 iP~~~~e~~v--vWfds~--------~----------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~ 579 (1175)
||+.+.++.+ ||||++ . |..|| .+ .+++.+||+|+||++||+++||+++++.+.++
T Consensus 241 iP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w-~d---s~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~ 316 (556)
T PRK12268 241 VPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFW-LD---PETKSYYFIGKDNIPFHSIIWPAMLLGSGEPL 316 (556)
T ss_pred CCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHh-CC---CCCeEEEEEeeccCcchHHHHHHHHHhcCCCC
Confidence 9955445556 999976 1 23477 22 34566999999999999999999999988667
Q ss_pred ccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHH
Q psy7266 580 TKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFIN 659 (1175)
Q Consensus 580 ~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~ 659 (1175)
.+|+.+++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++.++.++|++|+++.+....|+++++.++|+++
T Consensus 317 ~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~-yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~ 395 (556)
T PRK12268 317 KLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALER-YPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVN 395 (556)
T ss_pred CCCCEeeccCCEEECCeeeccCCCcccCHHHHHHH-cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHH
Confidence 88999999999999999999999999999999996 99999999999998999999999999988889999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhH
Q psy7266 660 RALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQK 739 (1175)
Q Consensus 660 r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~ 739 (1175)
|+.+++.++.++.+|...++..|+|++++++.+++.+.++|++|+|+.|++.+++|++.+|+|++..+||.+.++ +.
T Consensus 396 r~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~~~~---~~ 472 (556)
T PRK12268 396 RVLSFIEKYFGGIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKT---DR 472 (556)
T ss_pred HHHHHHHHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhhhcC---CH
Confidence 999999887766555444577899999999999999999999999999999999999999999999999987653 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchhhhHHHH
Q psy7266 740 SRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQVDEWK 819 (1175)
Q Consensus 740 ~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~~ie~~~ 819 (1175)
.++..+++++.++++.+++||+|||||+||+||++||.+... ...++.+. .++.||.|+.+.+||+||+++++|+++
T Consensus 473 ~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~~~~--~~~w~~~~-~~~~g~~i~~~~~lf~r~~~~~~~~~~ 549 (556)
T PRK12268 473 ERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIE--KLTWESLK-PLLPGHPINKPEPLFKKIDDEQIEEEL 549 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCCCCc--ccchhhhc-CCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 456788889999999999999999999999999999973111 11222221 367899999999999999999999999
Q ss_pred HHhcCc
Q psy7266 820 LKYGGQ 825 (1175)
Q Consensus 820 ~~~~g~ 825 (1175)
++++|.
T Consensus 550 ~~~~~~ 555 (556)
T PRK12268 550 ERLGGA 555 (556)
T ss_pred HHhcCC
Confidence 999885
|
|
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-98 Score=918.36 Aligned_cols=509 Identities=39% Similarity=0.711 Sum_probs=470.4
Q ss_pred EEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 283 ~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
|+||+|||||||.|||||+++.++ +|+++||+||+|++|+|++|+|+||++|+.+|+++|++|.++++.+.+.|+++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~-aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 79 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTIL-ADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWK 79 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHH-HHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999997665 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCcc
Q psy7266 363 WFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLI 442 (1175)
Q Consensus 363 ~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~ 442 (1175)
+|||++|++.+|+++.|.+.++++|.+|+++|+||++++.++||+.|+++|+|++|+|+||.|++++++|++|+.||...
T Consensus 80 ~LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~ 159 (530)
T TIGR00398 80 WLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHL 159 (530)
T ss_pred HhCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcC--CCCCchHHHHHHHHhhcCCCcEeeeccCC-CCcc
Q psy7266 443 NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETS--DQWSSNARVICKAWLKDGLKPRCITRDLK-WGIP 519 (1175)
Q Consensus 443 ~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~--~~~~~~~~~~~~~wl~~~l~dw~ISR~~~-WG~p 519 (1175)
++.++++|+|+|||++++++.++||||+|+++++.|++++++++ ..||+..++++.+||.++++||||||+++ ||+|
T Consensus 160 ~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGip 239 (530)
T TIGR00398 160 EPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIP 239 (530)
T ss_pred CHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCee
Confidence 99999999999999999999999999999999999999998653 24777888999999987899999999999 9999
Q ss_pred cCCCCCCCce--EEecCc---------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccC
Q psy7266 520 VPLPGFENKY--SLSSSP---------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKV 582 (1175)
Q Consensus 520 iP~~~~e~~v--vWfds~---------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p 582 (1175)
||.| +++| ||||++ .|.+|||.+ .+++++||+|+||++||+++||+|+++++ +++|
T Consensus 240 vP~~--~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~---~~~~~v~~~G~Di~~~h~~~~~a~l~~~~--~~~~ 312 (530)
T TIGR00398 240 VPND--PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNND---EDAELIHFIGKDIVRFHTIYWPAMLMGLG--LPLP 312 (530)
T ss_pred CCCC--CCcEEEEeecchHHhHhhhccccCChhhHHHhCCCC---CCceEEEEEecccchhHHHHHHHHHHhCC--CCCC
Confidence 9988 4566 999987 245789986 67888999999999999999999999986 6789
Q ss_pred eEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHH
Q psy7266 583 NHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRAL 662 (1175)
Q Consensus 583 ~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~ 662 (1175)
+.+++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++.++.+.|++|+++.+....|+++++.++|+++|+.
T Consensus 313 ~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~-~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 313 TQVFSHGYLTVEGGKMSKSLGNVVDPSDLLAR-FGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred CEEEeeccEEECCceecccCCceecHHHHHHH-cCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999996 99999999999988889999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHH
Q psy7266 663 SFIEKNYGSTIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSR 741 (1175)
Q Consensus 663 ~~~~~~~~~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~ 741 (1175)
+++.+++++.+|.. .....|+|++++++.+.+.+.++|++|+|+.|++.+++|++.+|+|++.++||.+.+++ . +
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~---~-~ 467 (530)
T TIGR00398 392 GFIKKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQS---P-R 467 (530)
T ss_pred HHHHHhcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCCh---H-H
Confidence 99888776666643 24578999999999999999999999999999999999999999999999999887642 2 4
Q ss_pred HHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccc
Q psy7266 742 ASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIE 811 (1175)
Q Consensus 742 ~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~ 811 (1175)
+.++++++.++++++++||+|||||+||+||++|+.+.... ....++.||.|+++.|||+|||
T Consensus 468 ~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~-------~~~~~~~~~~i~~~~~lf~ki~ 530 (530)
T TIGR00398 468 LKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELEWD-------FKLKLLEGHKLNKAEPLFSKIE 530 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCChhhh-------hhcCCCCCCCCCCCCCCCCCCC
Confidence 66788899999999999999999999999999999864321 1112557999999999999986
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-96 Score=888.26 Aligned_cols=503 Identities=26% Similarity=0.433 Sum_probs=445.5
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
.+++|+||+|||||||.|||||+++.++ +|+++||+||+|++|+|++||||||++|+..|++.|++|.++|++|+..|+
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~-aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~ 145 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIA-ADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYR 145 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHH-HHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4678999999999999999999998665 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCccccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGC 438 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~ 438 (1175)
+++++|||++|.|++|++|.|.+.||++|.+|+++|+||+++++++||++|++|+.+.++..
T Consensus 146 ~~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~------------------ 207 (616)
T PLN02224 146 TLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLE------------------ 207 (616)
T ss_pred HHHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcC------------------
Confidence 99999999999999999999999999999999999999999999999999999988776531
Q ss_pred CCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCCCcEeeeccC-CC
Q psy7266 439 GQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITRDL-KW 516 (1175)
Q Consensus 439 g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR~~-~W 516 (1175)
.+.|..||++++.+.+++|||+|++|++.|.+|+++.+..+ |...++.+.+||+++|+||||||++ .|
T Consensus 208 ----------~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~W 277 (616)
T PLN02224 208 ----------NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDW 277 (616)
T ss_pred ----------CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCC
Confidence 24588899999999999999999999999999998876544 5567788999999999999999985 89
Q ss_pred CcccCCCCCCCce--EEecCc--------c----------ccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhC
Q psy7266 517 GIPVPLPGFENKY--SLSSSP--------S----------LVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAG 576 (1175)
Q Consensus 517 G~piP~~~~e~~v--vWfds~--------~----------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~ 576 (1175)
|||||.+ +++| |||||+ . +..|||.+ +||+|+||++||+++|||+++++|
T Consensus 278 GIpvP~~--~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~--------v~~iGKDii~fH~i~wpa~l~~~g 347 (616)
T PLN02224 278 GIPVPDD--DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPAS--------LHLIGKDILRFHAVYWPAMLMSAG 347 (616)
T ss_pred ceECCCC--CCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcc--------eEEEeecccccHHHHHHHHHHHCC
Confidence 9999966 5677 999998 1 13378876 999999999999999999999875
Q ss_pred CCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHH
Q psy7266 577 DQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGN 656 (1175)
Q Consensus 577 ~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n 656 (1175)
+++|+.+++||||+++|+|||||+||+|+|.++++. ||+|++||||++.++.++|.+|+++.|.+++|++|+|++||
T Consensus 348 --~~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~~-ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgN 424 (616)
T PLN02224 348 --LELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQK-FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGN 424 (616)
T ss_pred --CCCCcEEEecccEecCCccccccCCccCCHHHHHHH-cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999996 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCC-CChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCC
Q psy7266 657 FINRALSFIEKNYGSTIPEIS-PIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGS 735 (1175)
Q Consensus 657 ~~~r~~~~~~~~~~~~~p~~~-~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~ 735 (1175)
+++|++.|+.+++++.+|... ....|.+++++++.+++.+.++|++++++.|++.+++|++.+|+|++..+||.+.+++
T Consensus 425 ll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~l~k~~ 504 (616)
T PLN02224 425 LLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQG 504 (616)
T ss_pred HHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchhhhccc
Confidence 999999999998888776532 3456889999999999999999999999999999999999999999999999987754
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCC-ccccCCCCCCccCCCCCCccccchhh
Q psy7266 736 PEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSP-SLVQFLPTGHKIGTPAPLFRKIEQAQ 814 (1175)
Q Consensus 736 ~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~-~~~~~l~~Gh~i~~p~~LF~ki~~~~ 814 (1175)
..+..++.+++++++++++++++||+|||||+|++||++||.+........+. ..+..++.||.|+++.|||+||+.++
T Consensus 505 ~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~Lf~ri~~~~ 584 (616)
T PLN02224 505 GVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSITWSDTKWGGLKGGQVMEQASPVFARIELNP 584 (616)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCCcccccccchhhhccccCCCCCCCCCCCCCCCCcCcch
Confidence 32344567788899999999999999999999999999999864321000010 11223678999999999999999543
Q ss_pred ---hHHHHHHhc
Q psy7266 815 ---VDEWKLKYG 823 (1175)
Q Consensus 815 ---ie~~~~~~~ 823 (1175)
+++++.+.+
T Consensus 585 ~~~~~~~~~~~~ 596 (616)
T PLN02224 585 EKEEDEKKPKVG 596 (616)
T ss_pred HHHHHHHhhhhc
Confidence 445554433
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-96 Score=909.59 Aligned_cols=500 Identities=28% Similarity=0.475 Sum_probs=448.8
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
+++|+||+|+|||||.|||||+++.+ .+|+++||+||+|++|+|++|+|+||++|+.+|++.|++|.++|++|.+.|++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~-~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~ 81 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTI-AADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKE 81 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHH-HHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999755 59999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
+|++|||++|.|.+|+++.|.+.++++|.+|+++|+||++.+.++||+.|++||+|+++.
T Consensus 82 ~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~-------------------- 141 (648)
T PRK12267 82 LWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV-------------------- 141 (648)
T ss_pred HHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc--------------------
Confidence 999999999999999999999999999999999999999999999999999999999853
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHH-HHhhcCCCcEeeeccC-CC
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICK-AWLKDGLKPRCITRDL-KW 516 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~wl~~~l~dw~ISR~~-~W 516 (1175)
..|+|++||++++++.++||||+|++++++|.+|+++++.. ||+..++.+. +||+++|+||||||++ .|
T Consensus 142 --------~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~W 213 (648)
T PRK12267 142 --------DGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDW 213 (648)
T ss_pred --------cCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCc
Confidence 02679999999999999999999999999999999876543 5777888888 9998889999999995 79
Q ss_pred CcccCCCCCCCce--EEecCc---------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCc
Q psy7266 517 GIPVPLPGFENKY--SLSSSP---------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQY 579 (1175)
Q Consensus 517 G~piP~~~~e~~v--vWfds~---------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~ 579 (1175)
|||||.+ +++| |||||+ +|++|||.+ +||+|+||++||+++||+++++++ +
T Consensus 214 GipvP~~--~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~--------~~~~GkDii~fH~i~wpa~l~~~~--~ 281 (648)
T PRK12267 214 GIPVPFD--PKHVVYVWIDALLNYITALGYGSDDDELFKKFWPAD--------VHLVGKDILRFHAIYWPIMLMALG--L 281 (648)
T ss_pred ceECCCC--CCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccc--------eEEEeeeecchhHHHHHHHHHhCC--C
Confidence 9999975 5777 999998 245789987 999999999999999999999986 7
Q ss_pred ccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHH
Q psy7266 580 TKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFIN 659 (1175)
Q Consensus 580 ~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~ 659 (1175)
++|++|++||||+.+|+|||||+||+|+|.++++. ||+|+|||||++.++.++|++|+++.|..++|++|+|++||+++
T Consensus 282 ~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~~-ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~ 360 (648)
T PRK12267 282 PLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVDR-YGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLN 360 (648)
T ss_pred CCCcEEEecceEEECCceecccCCcccCHHHHHHH-cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHH
Confidence 89999999999999999999999999999999996 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhh
Q psy7266 660 RALSFIEKNYGSTIPE-ISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQ 738 (1175)
Q Consensus 660 r~~~~~~~~~~~~~p~-~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~ 738 (1175)
|+..++.+++++.+|. ..+...|+|++++++.+++.+.++|++|+|+.|++.+++|++.+|+|++..+||.+.+++ .+
T Consensus 361 R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~~~~~~-~~ 439 (648)
T PRK12267 361 RTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWVLAKDE-GK 439 (648)
T ss_pred HHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChhhhcCc-cc
Confidence 9999999888887774 345678999999999999999999999999999999999999999999999999876642 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchh-hhHH
Q psy7266 739 KSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQA-QVDE 817 (1175)
Q Consensus 739 ~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~-~ie~ 817 (1175)
..++.+++++++++++.+++||+||||++|++||++||.+.... .+.....+..+++||.|+++.+||+||+.+ .++.
T Consensus 440 ~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~~~~~-~~~~~~~~~~~~~g~~~~~~~~lf~k~~~~~~~~~ 518 (648)
T PRK12267 440 KERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLEEELT-SWESLLEWGGLPAGTKVAKGEPLFPRIDVEEEIAY 518 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCCcccc-chhhhhhhccccCCCccCCCCCCcCCCCcHHHHHH
Confidence 45678899999999999999999999999999999999853221 110000123467899999999999999974 5544
Q ss_pred HHHHhcC
Q psy7266 818 WKLKYGG 824 (1175)
Q Consensus 818 ~~~~~~g 824 (1175)
. +++.+
T Consensus 519 ~-~~~~~ 524 (648)
T PRK12267 519 I-KEQME 524 (648)
T ss_pred H-HHhhh
Confidence 3 34433
|
|
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-95 Score=874.07 Aligned_cols=505 Identities=21% Similarity=0.325 Sum_probs=426.8
Q ss_pred cCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 243 KSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 243 ~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
+++.|||.++|.+ |+.|++.++|.+... .+.++|+|.+|||||||.||||||++.+| .|+++||+||+||+
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~-------~~~~~f~I~~PPPNVTG~LHmGHAl~~tl-~D~l~RykRM~G~~ 72 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPN-------EDKPPFSIDTPPPNVTGSLHMGHALNYTL-QDILARYKRMRGYN 72 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCCC-------CCCCCcEEeCCCCCCCCcccchhhhhHHH-HHHHHHHHHcCCCe
Confidence 4578999999999 999999999987542 11156999999999999999999999999 99999999999999
Q ss_pred cccccccCCcchHHHHHHH----HcCCCchh------------hHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHH
Q psy7266 322 TLYVSGTDEYGTATETKAL----EEGLTPRQ------------ICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIV 383 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~----~~g~~p~~------------~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v 383 (1175)
|+|++||||+|++||.+++ ++|+++.+ +.+++...|.++|++||+|+||.+ +|+||.+.++|
T Consensus 73 vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av 152 (877)
T COG0525 73 VLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAV 152 (877)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHH
Confidence 9999999999999999876 33777654 445677899999999999999975 69999999999
Q ss_pred HHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec-----c--------------------c-----------------
Q psy7266 384 QHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE-----G--------------------V----------------- 421 (1175)
Q Consensus 384 ~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~-----g--------------------~----------------- 421 (1175)
+++|.+||++|+||+++++|||||.|+|.|||.+|+ | |
T Consensus 153 ~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~D 232 (877)
T COG0525 153 QEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDD 232 (877)
T ss_pred HHHHHHHHHCCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCC
Confidence 999999999999999999999999999999998774 0 0
Q ss_pred ------------CCCcc---------------------------c----------------cCCCCCcccccC-Ccc---
Q psy7266 422 ------------CPKCR---------------------------Y----------------EDARGDQCDGCG-QLI--- 442 (1175)
Q Consensus 422 ------------cP~c~---------------------------~----------------~d~~G~~c~~~g-~~~--- 442 (1175)
+|.|+ . .|.+|...++|+ .+-
T Consensus 233 eRYk~LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~ 312 (877)
T COG0525 233 ERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLD 312 (877)
T ss_pred hhhHhhcCCEEecCCCCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCc
Confidence 02221 1 146777777775 431
Q ss_pred ---------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHHHH
Q psy7266 443 ---------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAW 500 (1175)
Q Consensus 443 ---------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~w 500 (1175)
+++.|.+|+|+|||+++|++.++|||+++..+++.+++.++++... .|.++++.+.+|
T Consensus 313 r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W 392 (877)
T COG0525 313 RFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDW 392 (877)
T ss_pred HHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHH
Confidence 2467899999999999999999999999999999999999954433 567899999999
Q ss_pred hhcCCCcEeeeccCCCCcccCCCCC-----------------------------CCce--EEecCc--------------
Q psy7266 501 LKDGLKPRCITRDLKWGIPVPLPGF-----------------------------ENKY--SLSSSP-------------- 535 (1175)
Q Consensus 501 l~~~l~dw~ISR~~~WG~piP~~~~-----------------------------e~~v--vWfds~-------------- 535 (1175)
+ ++++|||||||+||||+||+|+| +.+| |||||+
T Consensus 393 ~-~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~ 471 (877)
T COG0525 393 M-ENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETP 471 (877)
T ss_pred H-hhCcCceeeeeeecCcccceEEecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcch
Confidence 9 69999999999999999999976 2367 999997
Q ss_pred cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC-CcccCeEEEeecee-ecCCCcccccCCCccCchhhhh
Q psy7266 536 SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD-QYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKD 613 (1175)
Q Consensus 536 ~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~-~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~ 613 (1175)
++++|+|.+ +.+.|.||++||..+. ++++..+ +..|++.|++||+| +.+|+|||||+||||+|.++|+
T Consensus 472 ~l~~fyPt~--------llvtG~DIIffWvarm--i~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~ 541 (877)
T COG0525 472 DLKKFYPTD--------LLVTGHDIIFFWVARM--IMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVID 541 (877)
T ss_pred HHHhcCCCc--------cccccchhhHHHHHHH--HHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHH
Confidence 356777887 7899999999998874 3333333 45788999999999 6899999999999999999999
Q ss_pred cCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCChhhHHHHHHH
Q psy7266 614 TGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE----ISPIHEDFLLLALI 689 (1175)
Q Consensus 614 ~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~----~~~~~~d~~l~~~l 689 (1175)
. ||+|||||+|++.+..|+|++|+++++... ++|+|++|| +.+|+..++++..+. ...+..|+||++++
T Consensus 542 ~-yGaDAlRf~la~~~~~G~Di~~~~~~~~~~--rnF~nKlWN----a~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l 614 (877)
T COG0525 542 K-YGADALRFTLASLASPGRDINFDEKRVEGY--RNFLNKLWN----ATRFVLMNLDDLGPDDLDLLALSLADRWILSRL 614 (877)
T ss_pred H-hChHHHHHHHHhccCCCcccCcCHHHHHHH--HHHHHHHHh----HHHHHHhcccccCcccccccccchHHHHHHHHH
Confidence 6 999999999999989999999999999853 445555555 788887765432221 12258899999999
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHH
Q psy7266 690 NRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPST 767 (1175)
Q Consensus 690 ~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~ 767 (1175)
+++++.++++|++|+|..|.+.|++| ..+|++||+..|+..... . . ....+.+++..++..+++||||||||+
T Consensus 615 ~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~--~--~-~~~~a~~tL~~vl~~~lrLLhPfmPfi 689 (877)
T COG0525 615 NETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG--E--E-EKRAARATLYYVLDTLLRLLHPFMPFI 689 (877)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--H--H-HHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 99999999999999999999999999 599999999999965422 1 1 223567778999999999999999999
Q ss_pred HHHHHHHcCCC
Q psy7266 768 ASTIASQLGAS 778 (1175)
Q Consensus 768 se~i~~~L~~~ 778 (1175)
||+||+.|...
T Consensus 690 TEei~q~l~~~ 700 (877)
T COG0525 690 TEEIWQKLPGT 700 (877)
T ss_pred hHHHHHhcCCC
Confidence 99999999764
|
|
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-92 Score=901.09 Aligned_cols=509 Identities=20% Similarity=0.272 Sum_probs=437.5
Q ss_pred cCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 243 KSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 243 ~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
+++.|++.++|++ +++|++.++|+... ..++++|+|++||||+||.|||||+++.++ +|+++||+||+|++
T Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~-------~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~-~D~~~Ry~rm~G~~ 72 (861)
T TIGR00422 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDG-------NSNKPPFCIDIPPPNVTGSLHIGHALNWSI-QDIIARYKRMKGYN 72 (861)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCc-------ccCCCeEEEEeCCCCCCCCCcHHHhHHHHH-HHHHHHHHHhcCCc
Confidence 4578999999999 99999999997643 235678999999999999999999999888 99999999999999
Q ss_pred cccccccCCcchHHHHHHHH----cCCCch------------hhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHH
Q psy7266 322 TLYVSGTDEYGTATETKALE----EGLTPR------------QICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIV 383 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~~----~g~~p~------------~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v 383 (1175)
|+|++||||||+|||.++++ .|.++. +++++|...+++++++||+++||.+ .|+|+.|.+.|
T Consensus 73 vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v 152 (861)
T TIGR00422 73 VLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAV 152 (861)
T ss_pred ccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHH
Confidence 99999999999999998763 366663 5678899999999999999999864 59999999999
Q ss_pred HHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec--------------------------------------------
Q psy7266 384 QHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE-------------------------------------------- 419 (1175)
Q Consensus 384 ~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~-------------------------------------------- 419 (1175)
+++|.+|+++|+||++.++++|||.|+|+|||++|+
T Consensus 153 ~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~ 232 (861)
T TIGR00422 153 KEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPE 232 (861)
T ss_pred HHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCC
Confidence 999999999999999999999999999999997631
Q ss_pred ---------------------------------cc-----CCCcccc----------------CCCCCcccccCCcc---
Q psy7266 420 ---------------------------------GV-----CPKCRYE----------------DARGDQCDGCGQLI--- 442 (1175)
Q Consensus 420 ---------------------------------g~-----cP~c~~~----------------d~~G~~c~~~g~~~--- 442 (1175)
|| ||+|+.. |.+|.+|+.||.+.
T Consensus 233 ~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~ 312 (861)
T TIGR00422 233 DERYKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLT 312 (861)
T ss_pred chHHHHhcCCEEEcCCCCCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcC
Confidence 33 6777642 57899999998762
Q ss_pred ---------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHHHH
Q psy7266 443 ---------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAW 500 (1175)
Q Consensus 443 ---------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~w 500 (1175)
.+++|.+|+|+|||++++++.++||||++++++++++++++++... +|+++++++.+|
T Consensus 313 ~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~w 392 (861)
T TIGR00422 313 RFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNW 392 (861)
T ss_pred HHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHH
Confidence 3567899999999999999999999999999999999999854333 577889999999
Q ss_pred hhcCCCcEeeeccCCCCcccCCCCCC-----------------------------Cce--EEecCc--------------
Q psy7266 501 LKDGLKPRCITRDLKWGIPVPLPGFE-----------------------------NKY--SLSSSP-------------- 535 (1175)
Q Consensus 501 l~~~l~dw~ISR~~~WG~piP~~~~e-----------------------------~~v--vWfds~-------------- 535 (1175)
| ++++|||||||++||||||+|+|+ .+| |||||+
T Consensus 393 l-~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~ 471 (861)
T TIGR00422 393 L-RNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETK 471 (861)
T ss_pred H-hccccceeeeecccCCcceEEEECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHhCCCCChH
Confidence 9 589999999999999999998753 356 899997
Q ss_pred cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhc
Q psy7266 536 SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDT 614 (1175)
Q Consensus 536 ~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~ 614 (1175)
+|++|||.| ++++|+||++||..+|+++.++.. +..|++++++||||+ .+|+|||||+||+|+|.++++.
T Consensus 472 ~~~~~~P~d--------~~~~G~Dii~fw~~~~~~~~~~~~-~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ 542 (861)
T TIGR00422 472 DLKKFYPTD--------LLVTGYDIIFFWVARMIFRSLALT-GQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEK 542 (861)
T ss_pred HHhhcCCcc--------eeecchhhhhHHHHHHHHHHHHhc-CCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHH
Confidence 256789998 899999999999999988766653 345569999999998 4999999999999999999996
Q ss_pred CCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCChhhHHHHHHHHHH
Q psy7266 615 GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE--ISPIHEDFLLLALINRE 692 (1175)
Q Consensus 615 ~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~--~~~~~~d~~l~~~l~~~ 692 (1175)
||+|++||||++..+.++|++|+++.+... .+|+|++|| +.|...+....+++ ++. ......|+||+++++.+
T Consensus 543 -ygaDalR~~l~~~~~~~~d~~f~~~~~~~~--~~~~nkl~N-~~rf~~~~~~~~~~-~~~~~~~~~~~D~wil~~l~~~ 617 (861)
T TIGR00422 543 -YGADALRFTLASLVTPGDDINFDWKRVESA--RNFLNKLWN-ASRFVLMNLSDDLE-LSGGEEKLSLADRWILSKLNRT 617 (861)
T ss_pred -hChHHHHHHHHhCCCCCCCceecHHHHHHH--HHHHHHHHH-HHHHHHhccccccc-cccccccCCHHHHHHHHHHHHH
Confidence 999999999999888899999999998864 448999999 44433332222211 221 23567899999999999
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHH
Q psy7266 693 LSAYYSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTAST 770 (1175)
Q Consensus 693 ~~~~~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~ 770 (1175)
++.+.++|++|+|+.|++.|++|+ ++||+|++.++||.+..+ ..+...++.++.++++.+++||+|||||+||+
T Consensus 618 ~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~----~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEe 693 (861)
T TIGR00422 618 IKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGN----EAEKKAARDTLYYVLDKALRLLHPFMPFITEE 693 (861)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCC----cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999999999999999995 899999999999986432 12345677888999999999999999999999
Q ss_pred HHHHcCCC
Q psy7266 771 IASQLGAS 778 (1175)
Q Consensus 771 i~~~L~~~ 778 (1175)
||++|+..
T Consensus 694 lw~~L~~~ 701 (861)
T TIGR00422 694 IWQHFKEG 701 (861)
T ss_pred HHHhCccc
Confidence 99999853
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-89 Score=879.64 Aligned_cols=510 Identities=20% Similarity=0.268 Sum_probs=425.6
Q ss_pred ccccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHc
Q psy7266 240 LSSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLV 318 (1175)
Q Consensus 240 ~~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~ 318 (1175)
...+++.|++.++|.+ +++|++.++|+... ...++++|+|+.||||+||.|||||+++.++ +|+++||+||+
T Consensus 12 ~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~------~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~-~Di~~Ry~rm~ 84 (1052)
T PRK14900 12 RTELAKGYEHREVEARWYPFWQERGYFHGDE------HDRTRPPFSIVLPPPNVTGSLHLGHALTATL-QDVLIRWKRMS 84 (1052)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCCCccCCc------ccCCCCCEEEecCCCCCCCcchHHHHHhhHH-HHHHHHHHHhc
Confidence 3557789999999999 99999999997632 1235678999999999999999999999998 99999999999
Q ss_pred CCCcccccccCCcchHHHHHHHH-----cCCCchh------------hHHHHHHHHHHHHhhccccccccC--CCCCHHH
Q psy7266 319 NRNTLYVSGTDEYGTATETKALE-----EGLTPRQ------------ICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQ 379 (1175)
Q Consensus 319 G~~v~~~~G~D~~G~~ie~~a~~-----~g~~p~~------------~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~ 379 (1175)
||+|+|++||||||+|||.++++ .|.++.+ +.+++.+.|++++++||+++||.+ .|+||.|
T Consensus 85 G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~ 164 (1052)
T PRK14900 85 GFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGL 164 (1052)
T ss_pred CCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHH
Confidence 99999999999999999997763 2444443 567788999999999999999975 5999999
Q ss_pred HHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc---------------------------------------
Q psy7266 380 TEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG--------------------------------------- 420 (1175)
Q Consensus 380 ~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g--------------------------------------- 420 (1175)
.+.++++|.+|+++|+||++.++++|||.|+|+|+|.+|+.
T Consensus 165 ~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~ava 244 (1052)
T PRK14900 165 SRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVA 244 (1052)
T ss_pred HHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEE
Confidence 99999999999999999999999999999999999987741
Q ss_pred ---------------------------------------c-----CCCcccc----------------CCCCCcccccCC
Q psy7266 421 ---------------------------------------V-----CPKCRYE----------------DARGDQCDGCGQ 440 (1175)
Q Consensus 421 ---------------------------------------~-----cP~c~~~----------------d~~G~~c~~~g~ 440 (1175)
| ||+|+.. +.+|.+.+.+|.
T Consensus 245 V~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~ 324 (1052)
T PRK14900 245 VHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGP 324 (1052)
T ss_pred ECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcc
Confidence 0 1222211 234544444443
Q ss_pred cc------------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHH
Q psy7266 441 LI------------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARV 495 (1175)
Q Consensus 441 ~~------------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~ 495 (1175)
+. ..++|.+|+||||+++++++.++||||+++.|++++++++++.... ||...++
T Consensus 325 ~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~ 404 (1052)
T PRK14900 325 LAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTN 404 (1052)
T ss_pred cCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHH
Confidence 21 1356889999999999999999999999999999999999864433 6778899
Q ss_pred HHHHHhhcCCCcEeeeccCCCCcccCCCCCC-------------------------Cce--EEecCc-------------
Q psy7266 496 ICKAWLKDGLKPRCITRDLKWGIPVPLPGFE-------------------------NKY--SLSSSP------------- 535 (1175)
Q Consensus 496 ~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e-------------------------~~v--vWfds~------------- 535 (1175)
++.+|| ++|+||||||||+||||||+|+|+ .+| |||||+
T Consensus 405 ~~~~wl-~~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~ 483 (1052)
T PRK14900 405 TYMAWM-RNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQT 483 (1052)
T ss_pred HHHHHH-hcCccceEEeecCCCceeCeEEcCCCcEEecccccccccccCccceecCCceEEEEEcCChHHHHHHcCCCch
Confidence 999999 589999999999999999998643 367 999998
Q ss_pred -cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC---CcccCeEEEeeceeec-CCCcccccCCCccCchh
Q psy7266 536 -SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD---QYTKVNHIMATEYLNY-EDGKFSKSRGTGVFGNN 610 (1175)
Q Consensus 536 -~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~---~~~~p~~i~~~g~l~~-~G~KMSKS~GN~v~~~d 610 (1175)
+|.+|||.| ++++|+||++|| +++++..+. +..||++|++||||+. +|+|||||+||+|+|.+
T Consensus 484 ~~~~~~~P~d--------~~~~G~Dii~~W----~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~d 551 (1052)
T PRK14900 484 DTLRTFYPTS--------VMETGHDIIFFW----VARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLV 551 (1052)
T ss_pred HHHHhhCCch--------hhcccccHHhHH----HHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHH
Confidence 356789998 899999999874 454444332 3445699999999975 99999999999999999
Q ss_pred hhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc--CCCCCC-CCCChhhHHHHH
Q psy7266 611 AKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNY--GSTIPE-ISPIHEDFLLLA 687 (1175)
Q Consensus 611 ~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~--~~~~p~-~~~~~~d~~l~~ 687 (1175)
+++. ||+|+|||||++..+.++|++|+++.+... ++|+|++|| ++|++.+....+ ++..+. ..+...|+||++
T Consensus 552 vIe~-yGaDalR~~L~~~~~~g~D~~fs~~~l~~~--~~f~nkl~N-~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils 627 (1052)
T PRK14900 552 ITEQ-YGADALRFTLAALTAQGRDIKLAKERIEGY--RAFANKLWN-ASRFALMNLSGYQERGEDPARLARTPADRWILA 627 (1052)
T ss_pred HHHH-hCcHHHHHHHHhcCCCCCCCcccHHHHHHH--HHHHHHHHH-HHHHHHHhhhccCcccccccccccCHHHHHHHH
Confidence 9996 999999999999999999999999998543 469999999 677765544333 222222 234678999999
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhh
Q psy7266 688 LINRELSAYYSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMP 765 (1175)
Q Consensus 688 ~l~~~~~~~~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP 765 (1175)
+++.++..+.++|++|+|+.|++.||+|+ ++||+||+..+||. .+++ ..+...++.++.++++.+++||+||||
T Consensus 628 ~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l-~~~~---~~~~~~~~~~L~~~L~~l~~LLaPfmP 703 (1052)
T PRK14900 628 RLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEAL-ASED---PEARRSVQAVLVHCLQTSYRLLHPFMP 703 (1052)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhh-ccCC---HHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 99999999999999999999999999995 79999999999974 3332 223345677889999999999999999
Q ss_pred HHHHHHHHHcCC
Q psy7266 766 STASTIASQLGA 777 (1175)
Q Consensus 766 ~~se~i~~~L~~ 777 (1175)
|+||+||++|+.
T Consensus 704 ~~aEeiw~~L~~ 715 (1052)
T PRK14900 704 FITEELWHVLRA 715 (1052)
T ss_pred HHHHHHHHHhcc
Confidence 999999999975
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-89 Score=872.80 Aligned_cols=503 Identities=20% Similarity=0.255 Sum_probs=423.2
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
.+++.|++.++|++ +++|++.++|+... . .+++|+|++||||+||.|||||+++.++ +|+++||+||+||
T Consensus 4 ~~~~~y~~~~~E~~~~~~W~~~~~f~~~~-------~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~-~D~~~Ry~rm~G~ 74 (874)
T PRK05729 4 ELPKTYDPKEVEAKWYQKWEEKGYFKPDD-------N-SKKPFSIVIPPPNVTGSLHMGHALNNTL-QDILIRYKRMQGY 74 (874)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcccCc-------C-CCCCEEEecCCCCCCCcchHHHHHHHHH-HHHHHHHHHhCCC
Confidence 46789999999999 99999999998643 1 3456999999999999999999999998 9999999999999
Q ss_pred CcccccccCCcchHHHHHHH----HcCCCchhh------------HHHHHHHHHHHHhhccccccccC--CCCCHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKAL----EEGLTPRQI------------CDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEI 382 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~----~~g~~p~~~------------~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~ 382 (1175)
+|+|++||||||+|||.+++ ..|+++.++ +++|...+++++++||+++||.+ +|+|+.|.+.
T Consensus 75 ~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~ 154 (874)
T PRK05729 75 NTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKA 154 (874)
T ss_pred cccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHH
Confidence 99999999999999988765 347777654 78899999999999999999874 6999999999
Q ss_pred HHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec-----c-------------------------------------
Q psy7266 383 VQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE-----G------------------------------------- 420 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~-----g------------------------------------- 420 (1175)
|+++|.+|+++|+||++.++++|||.|+|+|||.+|+ |
T Consensus 155 v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~ 234 (874)
T PRK05729 155 VREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPE 234 (874)
T ss_pred HHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCC
Confidence 9999999999999999999999999999999998885 1
Q ss_pred ------------cCCCccc-------------------------------------------cCCCCCcccccCCcc---
Q psy7266 421 ------------VCPKCRY-------------------------------------------EDARGDQCDGCGQLI--- 442 (1175)
Q Consensus 421 ------------~cP~c~~-------------------------------------------~d~~G~~c~~~g~~~--- 442 (1175)
.||.|+. -|.+|.+++.||.+.
T Consensus 235 d~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~ 314 (874)
T PRK05729 235 DERYKHLIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLD 314 (874)
T ss_pred ccHHHHhcCCEEECCCCCCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCC
Confidence 1344332 145788888887642
Q ss_pred ---------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-CCCchHHHHHHHH
Q psy7266 443 ---------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-QWSSNARVICKAW 500 (1175)
Q Consensus 443 ---------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~w 500 (1175)
.+++|.+|+|+|||++++++.++||||+++++++++++++++... .+|+..++++.+|
T Consensus 315 ~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~w 394 (874)
T PRK05729 315 RFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHW 394 (874)
T ss_pred HHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHH
Confidence 235688999999999999999999999999999999999976543 3688899999999
Q ss_pred hhcCCCcEeeeccCCCCcccCCCCCC----------------------Cce--EEecCc--------------cccccCC
Q psy7266 501 LKDGLKPRCITRDLKWGIPVPLPGFE----------------------NKY--SLSSSP--------------SLVQFLP 542 (1175)
Q Consensus 501 l~~~l~dw~ISR~~~WG~piP~~~~e----------------------~~v--vWfds~--------------~~~~~wp 542 (1175)
| ++++|||||||++||||||+|+++ .+| |||||+ +|.+|||
T Consensus 395 l-~~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P 473 (874)
T PRK05729 395 M-ENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEAREKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYP 473 (874)
T ss_pred H-hcCccceeeeecccCCcccEEEeCCCcEEeCCcccccccccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCC
Confidence 9 589999999999999999987642 346 899986 2456899
Q ss_pred CCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC---CcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCc
Q psy7266 543 TATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD---QYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPA 618 (1175)
Q Consensus 543 ~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~---~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~ga 618 (1175)
.| ++++|+||++||..+ ++..+. +..|+++|++||+|. .+|+|||||+||||+|.|+++. ||+
T Consensus 474 ~d--------~~~~G~Dii~~W~a~----~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~-yGa 540 (874)
T PRK05729 474 TS--------VLVTGFDIIFFWVAR----MIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDK-YGA 540 (874)
T ss_pred cc--------cccccccccchHHHH----HHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHH-hCh
Confidence 98 899999999985544 333222 234559999999997 7999999999999999999996 999
Q ss_pred hhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHhcCCCCCC-CCCChhhHHHHHHHHHHHHHH
Q psy7266 619 DIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFI-EKNYGSTIPE-ISPIHEDFLLLALINRELSAY 696 (1175)
Q Consensus 619 DalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~-~~~~~~~~p~-~~~~~~d~~l~~~l~~~~~~~ 696 (1175)
|++||||++.++.++|++|+++.+... .+++|++||. .|...+. ...+.+.++. ..+...|+|++++++.+++.+
T Consensus 541 DalR~~ll~~~~~~~Di~fs~~~l~~~--~~~~nkl~N~-~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v 617 (874)
T PRK05729 541 DALRFTLAALASPGRDIRFDEERVEGY--RNFANKLWNA-SRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEV 617 (874)
T ss_pred HHHHHHHHhCCCCCCCceeCHHHHHHH--HHHHHHHHHH-HHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999888999999999998754 3477888873 3322221 1111122221 235678999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q psy7266 697 YSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQ 774 (1175)
Q Consensus 697 ~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~ 774 (1175)
.++|++|+|+.|++.|++|+ ++||+||+.++||.. + .+ ...+++++..+++.+++||+|||||+||+||++
T Consensus 618 ~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~--~--~~---~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~ 690 (874)
T PRK05729 618 TEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ--E--AA---KRATRATLAYVLEQILRLLHPFMPFITEELWQK 690 (874)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h--hH---HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHh
Confidence 99999999999999999996 899999999999953 2 11 346777889999999999999999999999999
Q ss_pred cCC
Q psy7266 775 LGA 777 (1175)
Q Consensus 775 L~~ 777 (1175)
|+.
T Consensus 691 l~~ 693 (874)
T PRK05729 691 LAP 693 (874)
T ss_pred ccc
Confidence 974
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-87 Score=855.14 Aligned_cols=507 Identities=21% Similarity=0.254 Sum_probs=421.4
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
.+++.|++.+ |++ +++|++.++|+... ..++++|+|++|||||||.|||||+++.++ +|+++||+||+||
T Consensus 56 ~~~~~y~~~~-E~~~~~~W~~~~~f~~~~-------~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~-~D~~~Ry~rm~G~ 126 (958)
T PLN02943 56 ETAKSFDFTS-EERIYNWWESQGYFKPNF-------DRGGDPFVIPMPPPNVTGSLHMGHAMFVTL-EDIMVRYNRMKGR 126 (958)
T ss_pred ccCCCCChhh-hHHHHHHHHHCCCcccCc-------ccCCCCEEEecCCCCCCCchhHHHHHHHHH-HHHHHHHHHhcCC
Confidence 5788999999 999 99999999997643 235677999999999999999999999998 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHH----cCCCchh------------hHHHHHHHHHHHHhhccccccccC--CCCCHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALE----EGLTPRQ------------ICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEI 382 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~----~g~~p~~------------~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~ 382 (1175)
+|+|++||||||+|||.++++ .|+++.+ +.+++...+++++++||+++||.+ .|+||.|.+.
T Consensus 127 ~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~ 206 (958)
T PLN02943 127 PTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRA 206 (958)
T ss_pred eeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHH
Confidence 999999999999999987653 4776653 346678899999999999999964 6999999999
Q ss_pred HHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc------------------------------------------
Q psy7266 383 VQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG------------------------------------------ 420 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g------------------------------------------ 420 (1175)
|+++|.+|+++|+||++.++|+|||.|+|+|||.+|+.
T Consensus 207 v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP 286 (958)
T PLN02943 207 VVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNP 286 (958)
T ss_pred HHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECC
Confidence 99999999999999999999999999999999976640
Q ss_pred ------------------------------------c-----CCCccc----------------cCCCCCcccccCCcc-
Q psy7266 421 ------------------------------------V-----CPKCRY----------------EDARGDQCDGCGQLI- 442 (1175)
Q Consensus 421 ------------------------------------~-----cP~c~~----------------~d~~G~~c~~~g~~~- 442 (1175)
| ||+|+. .|.+|.+.+.+|.++
T Consensus 287 ~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ 366 (958)
T PLN02943 287 EDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWF 366 (958)
T ss_pred CCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHH
Confidence 0 122221 145666666666542
Q ss_pred -------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-CCCchHHHHHHHHhh
Q psy7266 443 -------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-QWSSNARVICKAWLK 502 (1175)
Q Consensus 443 -------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~wl~ 502 (1175)
++++|.+|+|+||+++++++.++||||++++++++++++++.... .+|..+++++.+||
T Consensus 367 ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl- 445 (958)
T PLN02943 367 EAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWL- 445 (958)
T ss_pred HHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHH-
Confidence 346788999999999999999999999999999999999976433 36778899999999
Q ss_pred cCCCcEeeeccCCCCcccCCCCC----------------------------------CCce--EEecCc-----------
Q psy7266 503 DGLKPRCITRDLKWGIPVPLPGF----------------------------------ENKY--SLSSSP----------- 535 (1175)
Q Consensus 503 ~~l~dw~ISR~~~WG~piP~~~~----------------------------------e~~v--vWfds~----------- 535 (1175)
++++|||||||++||||||+|++ +++| |||||+
T Consensus 446 ~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~ 525 (958)
T PLN02943 446 SNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPD 525 (958)
T ss_pred hcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCc
Confidence 59999999999999999999874 2467 999998
Q ss_pred ----cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC---CcccCeEEEeeceee-cCCCcccccCCCccC
Q psy7266 536 ----SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD---QYTKVNHIMATEYLN-YEDGKFSKSRGTGVF 607 (1175)
Q Consensus 536 ----~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~---~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~ 607 (1175)
+|++|||.| ++++|+||++| |++.++..+. +..|++++++||+++ .+|+|||||+||+|+
T Consensus 526 ~~~~~~~~~yP~d--------l~~~G~Dii~f----W~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~ 593 (958)
T PLN02943 526 VSAEDFKKFYPTT--------VLETGHDILFF----WVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVID 593 (958)
T ss_pred cChHHHhccCCCe--------EEEEeehHHHH----HHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCC
Confidence 245689988 89999999987 5554433333 233569999999995 799999999999999
Q ss_pred chhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------------hcCCCCC
Q psy7266 608 GNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEK-------------NYGSTIP 674 (1175)
Q Consensus 608 ~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~-------------~~~~~~p 674 (1175)
|.++++. ||+|++||||++. +.++|++|+++.|.. |++++++++|....+...+.. .+++..+
T Consensus 594 p~~~i~~-ygaDalR~~l~~~-~~~~d~~fs~~~l~~--~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~ 669 (958)
T PLN02943 594 PLDTIKE-FGTDALRFTLALG-TAGQDLNLSTERLTS--NKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEES 669 (958)
T ss_pred HHHHHHh-cCChHHHHHHHhC-CCCCCccccHHHHHH--HHHHHHHHHHHHHHHHhccccccccccccccccccCCcccc
Confidence 9999996 9999999999985 458999999999975 688999999965544332211 1111111
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHH
Q psy7266 675 EISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQV 752 (1175)
Q Consensus 675 ~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~ 752 (1175)
...++..|+||+++++.+++++.++|++|+|+.|++.|++| .++||+|++.+|||.+..++. .....+..++..+
T Consensus 670 ~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~---~~~~~a~~vL~~v 746 (958)
T PLN02943 670 LLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDN---SALSRAQAVLLYV 746 (958)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCch---HHHHHHHHHHHHH
Confidence 11346789999999999999999999999999999999999 599999999999986533321 1234567788899
Q ss_pred HHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 753 SYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 753 l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
++.+++||+|||||+||+||++|+.
T Consensus 747 l~~ll~LL~PfmPfitEELwq~L~~ 771 (958)
T PLN02943 747 FENILKLLHPFMPFVTEELWQALPY 771 (958)
T ss_pred HHHHHHHHhCcchhHHHHHHHHcCC
Confidence 9999999999999999999999974
|
|
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-86 Score=844.20 Aligned_cols=507 Identities=20% Similarity=0.298 Sum_probs=425.2
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
.+++.|++.++|++ +++|.+.+.|+... ..++++|+|++|||||||.|||||+++.++ +|+++||+||+||
T Consensus 5 ~~~~~~~~~~~E~~~~~~W~~~~~f~~~~-------~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~-~D~~~R~~r~~G~ 76 (800)
T PRK13208 5 ELPKKYDPEELEEKWQKIWEEEGTYKFDP-------DERKPVYSIDTPPPTVSGSLHIGHVFSYTH-TDFIARYQRMRGY 76 (800)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCccccc-------ccCCCcEEEecCcCCCCCCccHHHHHhHHH-HHHHHHHHHcCCC
Confidence 35678999999999 99999999997643 225678999999999999999999999887 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHH-cCCCch------------hhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALE-EGLTPR------------QICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQH 385 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~-~g~~p~------------~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~ 385 (1175)
+|+|++||||||+|||.++++ .|+++. ++++++.+.|++++++||+++|| +++|+||.|.+.|++
T Consensus 77 ~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~ 156 (800)
T PRK13208 77 NVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQK 156 (800)
T ss_pred cccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHH
Confidence 999999999999999999987 599887 48899999999999999999997 458999999999999
Q ss_pred HHHHHHHcCCEEeceEEEeeeCCCCcccccceec------------------------ccCC----Cccc----------
Q psy7266 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE------------------------GVCP----KCRY---------- 427 (1175)
Q Consensus 386 ~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~------------------------g~cP----~c~~---------- 427 (1175)
+|.+|+++|+||++.++|+|||.|+|+|+|++|+ +||| +|.+
T Consensus 157 ~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~ 236 (800)
T PRK13208 157 SFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERY 236 (800)
T ss_pred HHHHHHHCCCeeecCcccccCCCCCCccchhhhccccccceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHH
Confidence 9999999999999999999999999999999763 2343 1211
Q ss_pred ----------------------------------------------------------cCCCCCcccccCCc--------
Q psy7266 428 ----------------------------------------------------------EDARGDQCDGCGQL-------- 441 (1175)
Q Consensus 428 ----------------------------------------------------------~d~~G~~c~~~g~~-------- 441 (1175)
-+..|.+.++||.+
T Consensus 237 ~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a 316 (800)
T PRK13208 237 KHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEA 316 (800)
T ss_pred HHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHH
Confidence 01223333345432
Q ss_pred --------------c--ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q psy7266 442 --------------I--NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGL 505 (1175)
Q Consensus 442 --------------~--~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l 505 (1175)
. ....|.+|+|+|||++++++.++||||+++++++++++++++.. .+|++.++++.+||+ ++
T Consensus 317 ~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~-~~P~~~~~~~~~~l~-~~ 394 (800)
T PRK13208 317 RKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEIN-WYPEHMRVRLENWIE-GL 394 (800)
T ss_pred HHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcE-EECHHHHHHHHHHHH-hc
Confidence 1 23456789999999999999999999999999999999998763 467788999999994 77
Q ss_pred C-cEeeeccCCCCcccCCCCCC--------------------------------------Cce--EEecCc---------
Q psy7266 506 K-PRCITRDLKWGIPVPLPGFE--------------------------------------NKY--SLSSSP--------- 535 (1175)
Q Consensus 506 ~-dw~ISR~~~WG~piP~~~~e--------------------------------------~~v--vWfds~--------- 535 (1175)
+ |||||||++||+|||+|+|+ .+| |||||+
T Consensus 395 ~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~ 474 (800)
T PRK13208 395 NWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGW 474 (800)
T ss_pred CCCceeeeccccCCcceEEEeCCCCCeecCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCC
Confidence 7 99999999999999985532 256 999997
Q ss_pred -----cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCch
Q psy7266 536 -----SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGN 609 (1175)
Q Consensus 536 -----~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~ 609 (1175)
.|++|||.| ++++|+||++||..++..+-.+.. +..+++.+++||+|+ .+|+|||||+||+|+|.
T Consensus 475 ~~~~~~~~~~~P~d--------~~~~G~Di~~~w~~~~l~~~~~~~-~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~ 545 (800)
T PRK13208 475 ERDEDLFEKVFPMD--------LRPQGHDIIRTWLFYTILRAYLLT-GKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPE 545 (800)
T ss_pred CCChhhhhhcCCce--------EEEeecchhhhHHHHHHHHHHHhc-CCCCcceEEEeeEEECCCCCCCCCCCCCCCCHH
Confidence 256789998 899999999999887654433332 345669999999996 69999999999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHH
Q psy7266 610 NAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALI 689 (1175)
Q Consensus 610 d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l 689 (1175)
++++. ||+|++||||+ .++.++|++|+++.+. .+++++++++|+++.+..+ .. .....+...+...|+|+++++
T Consensus 546 ~~i~~-yg~D~lR~~l~-~~~~~~d~~fs~~~~~--~~~~~l~kl~N~~r~~~~~-~~-~~~~~~~~~~~~~D~~il~~l 619 (800)
T PRK13208 546 ELLEK-YGADAVRYWAA-SARLGSDTPFDEKQVK--IGRRLLTKLWNASRFVLHF-SA-DPEPDKAEVLEPLDRWILAKL 619 (800)
T ss_pred HHHHH-cCccHHHHHHh-cCCCCCCceecHHHHH--HHHHHHHHHHHHHHHHHhc-cc-ccccCccccCCHHHHHHHHHH
Confidence 99996 99999999999 7888999999999986 4788999999986554422 11 001111223567899999999
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHH
Q psy7266 690 NRELSAYYSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPST 767 (1175)
Q Consensus 690 ~~~~~~~~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~ 767 (1175)
+.+++.+.++|++|+|+.|++.|++|+ ++||+|++.++||.+..+. ..+...++.++.++++.+++||+|||||+
T Consensus 620 ~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~---~~~~~~~~~~l~~~l~~l~~LLaPf~P~i 696 (800)
T PRK13208 620 AKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDE---EEEQKSARYTLYTVLDTLLRLLAPFLPFI 696 (800)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCC---cHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 999999999999999999999999996 4899999999998754321 11245677888999999999999999999
Q ss_pred HHHHHHHcC
Q psy7266 768 ASTIASQLG 776 (1175)
Q Consensus 768 se~i~~~L~ 776 (1175)
||+||++|+
T Consensus 697 aEelw~~L~ 705 (800)
T PRK13208 697 TEEVWSWLY 705 (800)
T ss_pred HHHHHHhCC
Confidence 999999998
|
|
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-86 Score=851.09 Aligned_cols=511 Identities=18% Similarity=0.236 Sum_probs=417.5
Q ss_pred cccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcC
Q psy7266 241 SSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVN 319 (1175)
Q Consensus 241 ~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G 319 (1175)
..+++.|++.++|.+ +++|++.++|.... ..++++|+|++||||+||.|||||+++.++ .|+++||+||+|
T Consensus 94 ~~~~~~yd~~~iE~~w~~~W~~~~~f~~~~-------~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti-~Dii~Ry~rm~G 165 (1066)
T PLN02381 94 SQMAKQYSPSAVEKSWYAWWEKSGYFGADA-------KSSKPPFVIVLPPPNVTGALHIGHALTAAI-EDTIIRWKRMSG 165 (1066)
T ss_pred hhcccCCCHHHHHHHHHHHHHHCCCccCCc-------cCCCCcEEEEeCCCCCCCCccHHHHHHHHH-HHHHHHHHHhCC
Confidence 457789999999999 99999999997643 235788999999999999999999999998 999999999999
Q ss_pred CCcccccccCCcchHHHHHHHH-----cCCCch------------hhHHHHHHHHHHHHhhccccccccC--CCCCHHHH
Q psy7266 320 RNTLYVSGTDEYGTATETKALE-----EGLTPR------------QICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQT 380 (1175)
Q Consensus 320 ~~v~~~~G~D~~G~~ie~~a~~-----~g~~p~------------~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~ 380 (1175)
|+|+|++||||||+|||.++++ .|+++. +++++|...+++++++||+++||.+ .|+|+.|.
T Consensus 166 ~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~ 245 (1066)
T PLN02381 166 YNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRS 245 (1066)
T ss_pred CcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHH
Confidence 9999999999999999999864 366554 5567788999999999999999865 69999999
Q ss_pred HHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec---------------------cc------------------
Q psy7266 381 EIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE---------------------GV------------------ 421 (1175)
Q Consensus 381 ~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~---------------------g~------------------ 421 (1175)
+.|+++|.+|+++|+||++.++|+|||.|+|+|||.+|+ |.
T Consensus 246 ~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vA 325 (1066)
T PLN02381 246 KAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVA 325 (1066)
T ss_pred HHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEe
Confidence 999999999999999999999999999999999998542 10
Q ss_pred -----------------------------------------------------------CCCccc---------------
Q psy7266 422 -----------------------------------------------------------CPKCRY--------------- 427 (1175)
Q Consensus 422 -----------------------------------------------------------cP~c~~--------------- 427 (1175)
||+|+.
T Consensus 326 TtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~ 405 (1066)
T PLN02381 326 TTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFIN 405 (1066)
T ss_pred cCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeee
Confidence 011111
Q ss_pred -cCCCCCcccccC-Cc----------------------c--ccccccCCcccCCCCccEEeecccccccchhHHHHHHHH
Q psy7266 428 -EDARGDQCDGCG-QL----------------------I--NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSW 481 (1175)
Q Consensus 428 -~d~~G~~c~~~g-~~----------------------~--~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~ 481 (1175)
-+.+|.+.+.|| .+ + ..++|.+|+||||+++++++.++|||++++.+++++++.
T Consensus 406 ~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~a 485 (1066)
T PLN02381 406 IFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDA 485 (1066)
T ss_pred eeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHH
Confidence 134555555544 21 1 245788999999999999999999999999999999998
Q ss_pred H---HhcCCCC-CchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCC--------------------------------
Q psy7266 482 V---SETSDQW-SSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGF-------------------------------- 525 (1175)
Q Consensus 482 ~---~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~-------------------------------- 525 (1175)
+ ......| |...++++.+|| ++++||||||||+||||||+|+|
T Consensus 486 v~~~~~~~i~~~P~~~~~~~~~wl-~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 564 (1066)
T PLN02381 486 AIDGENKKLEFIPKQYLAEWKRWL-ENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQ 564 (1066)
T ss_pred HhhccCCceEEEChHHHHHHHHHH-hcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhc
Confidence 8 3222235 667899999999 79999999999999999999864
Q ss_pred -----------CCce--EEecCc--------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC-
Q psy7266 526 -----------ENKY--SLSSSP--------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD- 577 (1175)
Q Consensus 526 -----------e~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~- 577 (1175)
+.+| |||||+ ++++|||.| +++.|.||++||...+. +++..+
T Consensus 565 ~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d--------~~~~G~Dii~~W~~rmi--~~~~~~~ 634 (1066)
T PLN02381 565 KFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTS--------VLETGHDILFFWVARMV--MMGMQLG 634 (1066)
T ss_pred ccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCCe--------eeeecchhhhhHHHHHH--HHHHHhC
Confidence 1245 999997 345688988 78899999988655433 233322
Q ss_pred CcccCeEEEeeceee-cCCCcccccCCCccCchhhhhc------------------------------------CCCchh
Q psy7266 578 QYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDT------------------------------------GLPADI 620 (1175)
Q Consensus 578 ~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~------------------------------------~~gaDa 620 (1175)
+..|+++|++||+|. .+|+|||||+||||+|.++|+. .||+|+
T Consensus 635 ~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADa 714 (1066)
T PLN02381 635 GDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDA 714 (1066)
T ss_pred CCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHH
Confidence 457789999999995 7999999999999999999981 389999
Q ss_pred HHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCC-C-----CCCCCCChhhHHHHHHHHHHHH
Q psy7266 621 FRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGS-T-----IPEISPIHEDFLLLALINRELS 694 (1175)
Q Consensus 621 lR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~-~-----~p~~~~~~~d~~l~~~l~~~~~ 694 (1175)
|||||++..+.++|++|+++.+.. .+.++|++||.+. |+..+.++ . ++...+...|+||+++++.++.
T Consensus 715 lR~~l~~~~~~~~di~~~~~~v~~--~r~f~nKlwNa~r----f~~~~~~~~~~~~~~~~~~~~~~~DrWILskL~~~i~ 788 (1066)
T PLN02381 715 LRFALVSYTAQSDKINLDILRVVG--YRQWCNKLWNAVR----FAMSKLGDDYTPPATLSVETMPFSCKWILSVLNKAIS 788 (1066)
T ss_pred HHHHHHcCCccccccCccHHHHHH--HHHHHHHHHHHHH----HHHhhcccccCcccccCccccCHHHHHHHHHHHHHHH
Confidence 999999988889999999999863 3567778887654 43333321 1 1112345689999999999999
Q ss_pred HHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHH
Q psy7266 695 AYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIA 772 (1175)
Q Consensus 695 ~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~ 772 (1175)
.+.++|++|+|+.|++.|++| .++||+||+..+||.+.++...+.. ...+..++..++..+++||+|||||+||+||
T Consensus 789 ~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~-r~~a~~~L~~vL~~llrLL~PfmPfitEELw 867 (1066)
T PLN02381 789 KTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASE-RAAAQDTLWICLDTGLRLLHPFMPFVTEELW 867 (1066)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHH-HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 999999999999999999999 6999999999999976432100111 1234456688889999999999999999999
Q ss_pred HHcCC
Q psy7266 773 SQLGA 777 (1175)
Q Consensus 773 ~~L~~ 777 (1175)
+.|+.
T Consensus 868 ~~L~~ 872 (1066)
T PLN02381 868 QRLPQ 872 (1066)
T ss_pred HHhhh
Confidence 99964
|
|
| >KOG0436|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-87 Score=717.97 Aligned_cols=468 Identities=27% Similarity=0.419 Sum_probs=423.5
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
+.+.+++|+|+.|||..|||||+++.++ +|+++||+|++|..|+|..|||+||++|+..|+..|.+|.++||...+.|+
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~ll-aDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~ 115 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLL-ADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFR 115 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHH-HHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHH
Confidence 4569999999999999999999998777 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceeccc-CCCccccCCCCCcccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGV-CPKCRYEDARGDQCDG 437 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~-cP~c~~~d~~G~~c~~ 437 (1175)
.+++..||.|+.|+||+||.|...||++|..+.++|+||++.+.+|||++|++|+++..|... ||.
T Consensus 116 qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~------------- 182 (578)
T KOG0436|consen 116 QLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPP------------- 182 (578)
T ss_pred HHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCC-------------
Confidence 999999999999999999999999999999999999999999999999999999999887522 210
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCc-hHHHHHHHHhhcCCCcEeeec---c
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSS-NARVICKAWLKDGLKPRCITR---D 513 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~wl~~~l~dw~ISR---~ 513 (1175)
| .++...+|++++++.+++|||+|++|+..|.+++.+++.+..| ...+.+..||+.||.|.+||| .
T Consensus 183 -g---------k~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsar 252 (578)
T KOG0436|consen 183 -G---------KVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSAR 252 (578)
T ss_pred -C---------ceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhh
Confidence 1 1344558999999999999999999999999999999887655 567899999999999999999 4
Q ss_pred CCCCcccCCCCCCCce-EEecCc------------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHH
Q psy7266 514 LKWGIPVPLPGFENKY-SLSSSP------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVA 574 (1175)
Q Consensus 514 ~~WG~piP~~~~e~~v-vWfds~------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~ 574 (1175)
+.||||+|.+. ..++ |||||+ .+.-+||+. +|+|||||+.||++||||+||+
T Consensus 253 l~WGIPvP~dd-sQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat--------~HvIGKDIlrFHavYWPafLma 323 (578)
T KOG0436|consen 253 LDWGIPVPGDD-SQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPAT--------LHVIGKDILRFHAVYWPAFLMA 323 (578)
T ss_pred cccCCCCCCCC-cceEEEeHHHHhhHHHhhcCCchhccccceeecCCCce--------eeehhhhhhhhhhhhhHHHHHh
Confidence 89999999764 4455 999997 456789997 9999999999999999999999
Q ss_pred hCCCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHH
Q psy7266 575 AGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNL 654 (1175)
Q Consensus 575 ~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l 654 (1175)
+| .++|+.|++|||++.+|.|||||+||||+|.+++++ ||+|++||||++.+..+.|.+|+++.+....|.+|++.+
T Consensus 324 AG--lplP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~k-ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~l 400 (578)
T KOG0436|consen 324 AG--LPLPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQK-YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTL 400 (578)
T ss_pred cC--CCCccEEEEeeeeeecceecchhhccccCHHHHHHH-hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHH
Confidence 97 679999999999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--HHHHh-cCC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy7266 655 GNFINRALS--FIEKN-YGS-TIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWV 730 (1175)
Q Consensus 655 ~n~~~r~~~--~~~~~-~~~-~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~ 730 (1175)
||++||++. +..++ ..+ ..+......++..+...++.+.+.+.+.++.|.+..+++++.++.+.+|.|++..+||.
T Consensus 401 G~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~aPWk 480 (578)
T KOG0436|consen 401 GNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQRAPWK 480 (578)
T ss_pred HHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhhcCCce
Confidence 999999987 43333 222 22222334566778999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccC
Q psy7266 731 LFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKY 782 (1175)
Q Consensus 731 l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~ 782 (1175)
+.++...+...+..++..++++++++++||+|+||.+|.+|+++||.+....
T Consensus 481 l~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~qr 532 (578)
T KOG0436|consen 481 LFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQR 532 (578)
T ss_pred eccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCChhhc
Confidence 9887766777788899999999999999999999999999999999986544
|
|
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-86 Score=805.90 Aligned_cols=486 Identities=30% Similarity=0.488 Sum_probs=437.9
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREV 360 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~ 360 (1175)
++|+||+|||||||.+||||+++.++ +|+++||+||+|++|.|++|+|+||++|+..|++.|++|.++|++|+..|.++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~-~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 79 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLA-ADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRL 79 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHH-HHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999997655 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCC
Q psy7266 361 YEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 361 ~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
++.|||++|.|.+|+++.|.+.|+++|.+|+++|+||++.+.++||+.|+++|+++++..
T Consensus 80 l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~-------------------- 139 (511)
T PRK11893 80 WEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE-------------------- 139 (511)
T ss_pred HHHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC--------------------
Confidence 999999999999999999999999999999999999999999999999999999998641
Q ss_pred ccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHHHHhhcCCCcEeeec-cCCCCc
Q psy7266 441 LINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITR-DLKWGI 518 (1175)
Q Consensus 441 ~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~wl~~~l~dw~ISR-~~~WG~ 518 (1175)
..|+|+|||++++++.++||||+|+.+++.+.++++++... +|+..++.+.+|++++++|||||| +++||+
T Consensus 140 -------~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGi 212 (511)
T PRK11893 140 -------DGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGI 212 (511)
T ss_pred -------CCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCc
Confidence 01789999999999999999999999999999999874332 577788889999988899999999 999999
Q ss_pred ccCCCCCCCce--EEecCc-------c-----------ccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCC
Q psy7266 519 PVPLPGFENKY--SLSSSP-------S-----------LVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ 578 (1175)
Q Consensus 519 piP~~~~e~~v--vWfds~-------~-----------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~ 578 (1175)
|+|.+ ++++ |||||+ . |.+|||.| +|++|+||++||+++||+++++++
T Consensus 213 piP~~--~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D--------~~~~G~D~~~~h~~~~~a~~~a~~-- 280 (511)
T PRK11893 213 PVPGD--PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPAD--------VHLIGKDILRFHAVYWPAFLMAAG-- 280 (511)
T ss_pred cCCCC--CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCc--------ceEecccccccchhHHHHHHHhCC--
Confidence 99975 5666 999987 1 56789987 899999999999999999999874
Q ss_pred cccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHH
Q psy7266 579 YTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFI 658 (1175)
Q Consensus 579 ~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~ 658 (1175)
..+|+++++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++.++.++|++|+++.+....|.+|.+.++|++
T Consensus 281 ~~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~ 359 (511)
T PRK11893 281 LPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLA 359 (511)
T ss_pred CCCCCEEEeeccEEECCeeecccCCcEEcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999996 9999999999998898999999999999889999999999999
Q ss_pred HHHHHHHHHhcCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChh
Q psy7266 659 NRALSFIEKNYGSTIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPE 737 (1175)
Q Consensus 659 ~r~~~~~~~~~~~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~ 737 (1175)
+|+.+++.+.+++.+|.. .+...|+|+++.++.+++.+.++|++|+++.|++.|++|++.+|+|++..+||.+.++
T Consensus 360 ~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~~~~~--- 436 (511)
T PRK11893 360 QRTLSMIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWSLAKT--- 436 (511)
T ss_pred HHHHHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCChhhhcC---
Confidence 999999887766656542 3467789999999999999999999999999999999999999999999999977653
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCc-cccCCCCCCccCCCCCCccccch
Q psy7266 738 QKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPS-LVQFLPTGHKIGTPAPLFRKIEQ 812 (1175)
Q Consensus 738 ~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~-~~~~l~~Gh~i~~p~~LF~ki~~ 812 (1175)
+..++.+++++++++++.+++||+|||||+||+||++||.+.... ..... ....++.||.|+.+.+||+||++
T Consensus 437 ~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lf~~~~~ 510 (511)
T PRK11893 437 DPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDEN--RDFAALSWGRLAPGTTLPKPEPIFPRLEE 510 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCCcccc--cchhhhhcccCCCCCCCCCCCCCccCCCC
Confidence 334678899999999999999999999999999999999754321 11110 12346679999999999999985
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-85 Score=843.93 Aligned_cols=511 Identities=15% Similarity=0.217 Sum_probs=413.5
Q ss_pred CCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCc
Q psy7266 244 SKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNT 322 (1175)
Q Consensus 244 ~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v 322 (1175)
.+.|++.++|++ +++|++.++|+.... ...++++|+|++||||+||.|||||+++.++ +|+++||+||+||+|
T Consensus 5 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~-----~~~~~~~f~~~dgPPyanG~~HiGH~~~~~i-kDii~Ry~rm~G~~V 78 (1159)
T PLN02882 5 GKDFSFPKQEEKILSLWSEIDAFKTQLK-----RTEGLPEYIFYDGPPFATGLPHYGHILAGTI-KDIVTRYQSMTGHHV 78 (1159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccccc-----ccCCCCCEEEeCCCCCCCCcchhhHHHHHHH-HHHHHHHHHcCCCcc
Confidence 357999999999 999999999976431 1235678999999999999999999999998 999999999999999
Q ss_pred ccccccCCcchHHHHHHH-HcCCCc----------------hhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHH
Q psy7266 323 LYVSGTDEYGTATETKAL-EEGLTP----------------RQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIV 383 (1175)
Q Consensus 323 ~~~~G~D~~G~~ie~~a~-~~g~~p----------------~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v 383 (1175)
+|++||||||+|||..++ +.|+++ .+++.+|.+.+++++++||+++|| .++|+++.|.+.+
T Consensus 79 ~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v 158 (1159)
T PLN02882 79 TRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESV 158 (1159)
T ss_pred cccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHH
Confidence 999999999999999986 557653 346677889999999999976665 4589999999999
Q ss_pred HHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec------------------c----c-----------CCCc-----
Q psy7266 384 QHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE------------------G----V-----------CPKC----- 425 (1175)
Q Consensus 384 ~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~------------------g----~-----------cP~c----- 425 (1175)
+|+|.+|+++|+||++.++++|||.|+|+||+.+++ + . .|.|
T Consensus 159 ~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~V 238 (1159)
T PLN02882 159 WWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCV 238 (1159)
T ss_pred HHHHHHHHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEE
Confidence 999999999999999999999999999999976552 0 0 0110
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 426 -------------------------------------------------------------------------------- 425 (1175)
Q Consensus 426 -------------------------------------------------------------------------------- 425 (1175)
T Consensus 239 nP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~ 318 (1159)
T PLN02882 239 NPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFR 318 (1159)
T ss_pred CCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEE
Confidence
Q ss_pred ----------------------ccc---------------------CCCCCcccccCCc----c----------------
Q psy7266 426 ----------------------RYE---------------------DARGDQCDGCGQL----I---------------- 442 (1175)
Q Consensus 426 ----------------------~~~---------------------d~~G~~c~~~g~~----~---------------- 442 (1175)
|.+ |.+|.+.+.+|.+ +
T Consensus 319 Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~ 398 (1159)
T PLN02882 319 VVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGR 398 (1159)
T ss_pred EEccCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCC
Confidence 000 0111111111111 0
Q ss_pred ----ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCC-CchH-HHHHHHHhhcCCCcEeeeccCCC
Q psy7266 443 ----NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNA-RVICKAWLKDGLKPRCITRDLKW 516 (1175)
Q Consensus 443 ----~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~-~~~~-~~~~~~wl~~~l~dw~ISR~~~W 516 (1175)
..+.|.+|+||||+++++++.++|||++++++++++++.+++. .| |..+ +.++.+|| ++++||||||||+|
T Consensus 399 L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~~~i--~w~P~~~~~~r~~~wl-~~~~DW~ISRqR~W 475 (1159)
T PLN02882 399 LVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQT--YWVPDYVKEKRFHNWL-ENARDWAVSRSRFW 475 (1159)
T ss_pred ccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhhCCc--EEECCcchhhHHHHHH-hcCcccceeecccc
Confidence 1235789999999999999999999999999999999987765 47 5567 47999999 68999999999999
Q ss_pred CcccCCCCCC-------------------------------------------------Cce--EEecCc----------
Q psy7266 517 GIPVPLPGFE-------------------------------------------------NKY--SLSSSP---------- 535 (1175)
Q Consensus 517 G~piP~~~~e-------------------------------------------------~~v--vWfds~---------- 535 (1175)
|+|||+|.|+ .+| |||||+
T Consensus 476 GtPIPvw~~~~~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p 555 (1159)
T PLN02882 476 GTPLPIWISDDGEEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYP 555 (1159)
T ss_pred CCccceEEeCCCCeEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCc
Confidence 9999998642 056 999998
Q ss_pred -----cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC-CcccCeEEEeeceeec-CCCcccccCCCccCc
Q psy7266 536 -----SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD-QYTKVNHIMATEYLNY-EDGKFSKSRGTGVFG 608 (1175)
Q Consensus 536 -----~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~-~~~~p~~i~~~g~l~~-~G~KMSKS~GN~v~~ 608 (1175)
.|..+||.| +++.|+||++|| ++..++++..+ +..+|++|++||||+. +|+|||||+||+|+|
T Consensus 556 ~e~~~~f~~~~PaD--------~i~eG~Dq~RgW--f~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP 625 (1159)
T PLN02882 556 FENKELFEKNFPAD--------FVAEGLDQTRGW--FYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDP 625 (1159)
T ss_pred ccChhHhhccCCce--------EEEEecchhhhH--HHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCH
Confidence 134568888 899999999986 33344444332 5788999999999986 899999999999999
Q ss_pred hhhhhcCCCchhHHHHHHhcCC-CCCCccccHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHhcCCCCCCC------CC
Q psy7266 609 NNAKDTGLPADIFRFYLLYVRP-ENQDTSFSWQDLATKNNSE---LLNNLGNFINRALSFIEKNYGSTIPEI------SP 678 (1175)
Q Consensus 609 ~d~i~~~~gaDalR~~ll~~~~-~~~D~~f~~~~~~~~~n~~---l~~~l~n~~~r~~~~~~~~~~~~~p~~------~~ 678 (1175)
.++++. ||+|+|||||++... .++|++|+++.+.+..+.. +.|.++++++++..+..+++++..|.. ..
T Consensus 626 ~evi~~-YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~ 704 (1159)
T PLN02882 626 NEVIDK-YGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSA 704 (1159)
T ss_pred HHHHHH-hCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccC
Confidence 999996 999999999997543 3688999999987643322 344444455555554444445555531 23
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHH
Q psy7266 679 IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISR-YCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLS 757 (1175)
Q Consensus 679 ~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~-~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~ 757 (1175)
...|+||+++++.+++.+.++|++|+|+.|++.|++|+. +||+|++.++||.+.+++ ..++.+++++++++++.++
T Consensus 705 ~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~---~~~~~~al~tL~~vL~~l~ 781 (1159)
T PLN02882 705 NVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTG---EEDCRTALSTLYNVLLTSC 781 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCC---hHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999974 899999999999876542 2345678899999999999
Q ss_pred HHccchhhHHHHHHHHHcCC
Q psy7266 758 LLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 758 ~lL~PfmP~~se~i~~~L~~ 777 (1175)
+||+|||||+||+||++|+.
T Consensus 782 ~LLaPfmPf~aEeI~q~L~~ 801 (1159)
T PLN02882 782 KVMAPFTPFFTEVLYQNLRK 801 (1159)
T ss_pred HHhhchhhHHHHHHHHHhcc
Confidence 99999999999999999975
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-85 Score=842.41 Aligned_cols=512 Identities=18% Similarity=0.219 Sum_probs=415.9
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
.+++.|++.++|++ +++|++.++|+..... ..++++|+|++||||+||.|||||+++.++ .|+++||+||+||
T Consensus 6 ~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~-----~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~-kD~i~Ry~rm~G~ 79 (975)
T PRK06039 6 EVDSQPDFPALEEEVLKFWKENDIFEKSIEN-----REGGPEFVFYDGPPTANGLPHYGHLLTRTI-KDVVPRYKTMKGY 79 (975)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCcccCccc-----cCCCCCEEEeCCCCCCCCCccHhhhHhhHH-HHHHHHHHHhCCC
Confidence 45678999999999 9999999999764311 236788999999999999999999999998 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHH-cCCC----------------chhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALE-EGLT----------------PRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTE 381 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~-~g~~----------------p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~ 381 (1175)
+|+|++||||||+|||.++++ .|++ +.+++++|.+.+++++++||+++||.+ .|+||.|.+
T Consensus 80 ~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~ 159 (975)
T PRK06039 80 KVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYME 159 (975)
T ss_pred cccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHH
Confidence 999999999999999999986 4765 467888899999999999999999864 699999999
Q ss_pred HHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceeccc-C--------------------------------------
Q psy7266 382 IVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGV-C-------------------------------------- 422 (1175)
Q Consensus 382 ~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~-c-------------------------------------- 422 (1175)
.|+|+|.+|+++|+||++.++++|||.|+|+|||.+|++. +
T Consensus 160 ~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~ava 239 (975)
T PRK06039 160 SVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALA 239 (975)
T ss_pred HHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEE
Confidence 9999999999999999999999999999999999877510 0
Q ss_pred --CCccc-------------------------------------------------------------------------
Q psy7266 423 --PKCRY------------------------------------------------------------------------- 427 (1175)
Q Consensus 423 --P~c~~------------------------------------------------------------------------- 427 (1175)
|...|
T Consensus 240 V~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~ 319 (975)
T PRK06039 240 VHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVH 319 (975)
T ss_pred ECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCcccee
Confidence 11100
Q ss_pred -----------------------cCCCCCcccccCCcc------------------------ccccccCCcccCCCCccE
Q psy7266 428 -----------------------EDARGDQCDGCGQLI------------------------NAIELIQPRCKQCSQAPT 460 (1175)
Q Consensus 428 -----------------------~d~~G~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~ 460 (1175)
-|..|.+.+.+|.+. ..++|.+|+|||||++++
T Consensus 320 ~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~ 399 (975)
T PRK06039 320 IAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLI 399 (975)
T ss_pred eCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEE
Confidence 011222222222110 123578999999999999
Q ss_pred EeecccccccchhHHHHHHHHHHhcCCCCCchHHH-HHHHHhhcCCCcEeeeccCCCCcccCCCCCC-------------
Q psy7266 461 VKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARV-ICKAWLKDGLKPRCITRDLKWGIPVPLPGFE------------- 526 (1175)
Q Consensus 461 ~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e------------- 526 (1175)
++.++||||+++++++++++++++.. .+|+..++ ++.+|| ++++||||||||+||||||+|.|+
T Consensus 400 ~~~~~qWFi~~~~~k~~ll~~~~~i~-~~P~~~~~~~~~~wl-~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~e 477 (975)
T PRK06039 400 YYATESWFIRVTKIKDRMLELNQKIN-WYPEHIKDGRFGKWL-ENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEE 477 (975)
T ss_pred EEecCeeeEecHHHHHHHHHhhCCeE-EECcccchhhHHHHH-hcCccceeeeccccCCcceEEEecCCCeEEEeccHHH
Confidence 99999999999999999999998753 34667787 999999 589999999999999999987542
Q ss_pred -----------------------------------Cce--EEecCc---------------cccccCCCCCCCCcceEEE
Q psy7266 527 -----------------------------------NKY--SLSSSP---------------SLVQFLPTATPQSKITLYQ 554 (1175)
Q Consensus 527 -----------------------------------~~v--vWfds~---------------~~~~~wp~~~~~~~v~~~~ 554 (1175)
.+| |||||+ .|.+|||.| ++
T Consensus 478 l~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad--------~~ 549 (975)
T PRK06039 478 LEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPAD--------FI 549 (975)
T ss_pred HHHHhCCCcchhhhcccccccccccCCCCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCce--------EE
Confidence 166 999997 246789998 89
Q ss_pred EeeccccchhHh--HHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCC
Q psy7266 555 FMAKDNVPFHSI--MFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPE 631 (1175)
Q Consensus 555 ~~GkD~i~fh~~--~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~ 631 (1175)
+.|+||++||-. +..+++. .+..+|+++++||||+ .+|+|||||+||+|+|.++++. ||+|++||||++..+.
T Consensus 550 ~~G~Di~r~Wf~~l~~~~~~~---~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~lls~~~~ 625 (975)
T PRK06039 550 VEGIDQTRGWFYTLLALSTAL---FDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-YGADALRWYLLSSSAP 625 (975)
T ss_pred EechhhHhhHHHHHHHHHHHh---cCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHH-hChHHHHHHHHhCCCC
Confidence 999999986422 2211111 2456789999999997 5999999999999999999996 9999999999998888
Q ss_pred CCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hcCCC---CCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHH
Q psy7266 632 NQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEK-NYGST---IPEISPIHEDFLLLALINRELSAYYSVLDKAKLRD 707 (1175)
Q Consensus 632 ~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~-~~~~~---~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~ 707 (1175)
++|++|+++.+.+..|+.+ +++||+++++..+..- .++.. .+...++..|+||+++++.+++.+.++|++|+|+.
T Consensus 626 ~~D~~fs~~~~~~~~~~~l-~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~ 704 (975)
T PRK06039 626 WEDLRFSEDGVREVVRKFL-LTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITK 704 (975)
T ss_pred CCCceechhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 9999999999777666655 8999988776544321 11101 11123567899999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 708 GIRYILNIS-RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 708 a~~~i~~~~-~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
|++.|++|+ .++|+|++.++++.+...+..+ ...++.++..+++.+++||+|||||+||+||++|+.
T Consensus 705 A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~~~~---~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~ 772 (975)
T PRK06039 705 AARAIRDFVDDLSNWYIRRSRRRFWKEEDDPD---KLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTR 772 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCcHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 999999997 6789999998664332221112 234566778999999999999999999999999985
|
|
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-85 Score=845.68 Aligned_cols=518 Identities=19% Similarity=0.247 Sum_probs=422.1
Q ss_pred ccccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHc
Q psy7266 240 LSSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLV 318 (1175)
Q Consensus 240 ~~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~ 318 (1175)
+..+++.||+.++|.+ +++|++.++|+..... -++.++++|+|++|||||||.|||||+++.++ +|+++||+||+
T Consensus 21 ~~~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~---~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~-~D~~~Ry~rm~ 96 (995)
T PTZ00419 21 ISSMAASYDPKEVESGWYEWWEKSGFFKPAEDA---KSLNSGKKFVIVLPPPNVTGYLHIGHALTGAI-QDSLIRYHRMK 96 (995)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHCCCcccCccc---cccCCCCeEEEEeCCCCCCCCCcHHHHHHHHH-HHHHHHHHHhc
Confidence 4557889999999999 9999999999763200 01246788999999999999999999999988 99999999999
Q ss_pred CCCcccccccCCcchHHHHHHH-----HcCCCch------------hhHHHHHHHHHHHHhhcccccccc--CCCCCHHH
Q psy7266 319 NRNTLYVSGTDEYGTATETKAL-----EEGLTPR------------QICDKYFAIHREVYEWFEIDFDYF--GRTSTPQQ 379 (1175)
Q Consensus 319 G~~v~~~~G~D~~G~~ie~~a~-----~~g~~p~------------~~~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~ 379 (1175)
|++|+|++||||||+|++.+++ +.|.++. +++++|...+++++++||+++||. ++|+|+.|
T Consensus 97 G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~ 176 (995)
T PTZ00419 97 GDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQR 176 (995)
T ss_pred CCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHH
Confidence 9999999999999999977653 4466554 456788899999999999999985 47999999
Q ss_pred HHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec---------------------cc-----------------
Q psy7266 380 TEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE---------------------GV----------------- 421 (1175)
Q Consensus 380 ~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~---------------------g~----------------- 421 (1175)
.+.++++|.+|+++|+||++.++++|||.|+|+|||.+|+ |.
T Consensus 177 ~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~ 256 (995)
T PTZ00419 177 SKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIV 256 (995)
T ss_pred HHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEE
Confidence 9999999999999999999999999999999999998765 20
Q ss_pred ----C-----------------------------CC-cc----------c------------------------------
Q psy7266 422 ----C-----------------------------PK-CR----------Y------------------------------ 427 (1175)
Q Consensus 422 ----c-----------------------------P~-c~----------~------------------------------ 427 (1175)
. |. .+ +
T Consensus 257 vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~ 336 (995)
T PTZ00419 257 VATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLP 336 (995)
T ss_pred EEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCC
Confidence 0 11 00 0
Q ss_pred ----cCCCCCcccccCCcc------------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHH
Q psy7266 428 ----EDARGDQCDGCGQLI------------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQ 479 (1175)
Q Consensus 428 ----~d~~G~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~ 479 (1175)
.+.+|.+.+++|.+. ..++|.+|+|||||++++++.++||||++++++++++
T Consensus 337 ~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al 416 (995)
T PTZ00419 337 FINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAV 416 (995)
T ss_pred eeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHH
Confidence 012333333343321 1346889999999999999999999999999999999
Q ss_pred HHHHhcCCCC-CchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCC---------------------------------
Q psy7266 480 SWVSETSDQW-SSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGF--------------------------------- 525 (1175)
Q Consensus 480 ~~~~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~--------------------------------- 525 (1175)
+++++....| |...++++.+|| ++++||||||||+||||||+|+|
T Consensus 417 ~~v~~~~i~~~P~~~~~~~~~wl-~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (995)
T PTZ00419 417 EAVRNGELKIIPSSHENVWYHWL-ENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFG 495 (995)
T ss_pred HHhhcCCeEEEChHHHHHHHHHH-hccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccC
Confidence 9998654444 667899999999 68999999999999999999743
Q ss_pred ----------CCce--EEecCc--------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC-C
Q psy7266 526 ----------ENKY--SLSSSP--------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD-Q 578 (1175)
Q Consensus 526 ----------e~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~-~ 578 (1175)
+.+| |||||+ ++.+|||.| +++.|+||++||.... ++++..+ +
T Consensus 496 ~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d--------~~~~G~Dii~~W~arm--~~~~~~~~~ 565 (995)
T PTZ00419 496 LSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTS--------LLETGSDILFFWVARM--VMMSLHLTD 565 (995)
T ss_pred CccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCc--------EEEechhHHhHHHHHH--HHHHHHhcC
Confidence 1267 999998 245689998 8999999999755443 3333332 2
Q ss_pred cccCeEEEeeceee-cCCCcccccCCCccCchhhhhc------------------------------------CCCchhH
Q psy7266 579 YTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDT------------------------------------GLPADIF 621 (1175)
Q Consensus 579 ~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~------------------------------------~~gaDal 621 (1175)
..|++.|++||+|. .+|+|||||+||||+|.++++. .||+|++
T Consensus 566 ~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDal 645 (995)
T PTZ00419 566 KLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDAL 645 (995)
T ss_pred CCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHH
Confidence 34569999999996 5999999999999999999981 3999999
Q ss_pred HHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC---C----CCCCCChhhHHHHHHHHHHHH
Q psy7266 622 RFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGST---I----PEISPIHEDFLLLALINRELS 694 (1175)
Q Consensus 622 R~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~---~----p~~~~~~~d~~l~~~l~~~~~ 694 (1175)
||||++.++.++|++|+.+.+.. .++|+|++||.+++++..+....... . +...+...|+||+++++.+++
T Consensus 646 R~~l~~~~~~~~Di~~~~~~v~~--~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~ 723 (995)
T PTZ00419 646 RFGLLAYTQQGRNINLDINRVVG--YRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIK 723 (995)
T ss_pred HHHHHhcCCCCCCccccHHHHHH--HHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 36789999998877665543321111 1 112345679999999999999
Q ss_pred HHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHH
Q psy7266 695 AYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIA 772 (1175)
Q Consensus 695 ~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~ 772 (1175)
.+.++|++|+|+.|++.|++| .++||+||+.++||.....+ ..+...+..++..+++.+++||+|||||+||+||
T Consensus 724 ~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~---~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw 800 (995)
T PTZ00419 724 EVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSD---GERKQHAQDVLHTVLDIGLRLLHPMMPFITEELY 800 (995)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCC---cHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 999999999999999999997 59999999999999732221 1223456777899999999999999999999999
Q ss_pred HHcCC
Q psy7266 773 SQLGA 777 (1175)
Q Consensus 773 ~~L~~ 777 (1175)
++|+.
T Consensus 801 ~~L~~ 805 (995)
T PTZ00419 801 QRLPN 805 (995)
T ss_pred Hhhhc
Confidence 99974
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-84 Score=825.99 Aligned_cols=506 Identities=16% Similarity=0.216 Sum_probs=414.7
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
..+.++++.++|.+ +++|++.++|+.... +..++++|+|++||||+||.|||||+++.++ +|+++||+||+||
T Consensus 14 ~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~-----~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~-~Dii~Ry~rm~G~ 87 (912)
T PRK05743 14 DFPMRANLPKREPEILKRWEENDLYQKIRE-----ANKGKPKFILHDGPPYANGDIHIGHALNKIL-KDIIVKSKTMSGF 87 (912)
T ss_pred CCCCCCChHHhhHHHHHHHHHCCCccccch-----hcCCCCcEEEeCCCCCCCCCccHHHHHHHHH-HHHHHHHHHccCC
Confidence 34557999999999 999999999975321 1246788999999999999999999999888 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHHc------CCCchh-------hHHHHHHHHHHHHhhcccccccc--CCCCCHHHHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALEE------GLTPRQ-------ICDKYFAIHREVYEWFEIDFDYF--GRTSTPQQTEIVQH 385 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~~------g~~p~~-------~~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~~~~v~~ 385 (1175)
+|+|++||||||+|||.++++. ++++.+ +++++.+.+++++++||+++||. ++|++|.|.+.+++
T Consensus 88 ~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~ 167 (912)
T PRK05743 88 DAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIR 167 (912)
T ss_pred cccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHH
Confidence 9999999999999999999875 666664 67778899999999999977764 57999999999999
Q ss_pred HHHHHHHcCCEEeceEEEeeeCCCCcccccceec----------------c---------c-------C-----------
Q psy7266 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE----------------G---------V-------C----------- 422 (1175)
Q Consensus 386 ~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~----------------g---------~-------c----------- 422 (1175)
+|.+|+++|+||++.++++|||.|+|+|||.+|+ + . .
T Consensus 168 ~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aia 247 (912)
T PRK05743 168 ALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIA 247 (912)
T ss_pred HHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEE
Confidence 9999999999999999999999999999998764 1 0 0
Q ss_pred --CCcc----------c---------------------------------------------------------------
Q psy7266 423 --PKCR----------Y--------------------------------------------------------------- 427 (1175)
Q Consensus 423 --P~c~----------~--------------------------------------------------------------- 427 (1175)
|... |
T Consensus 248 v~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~ 327 (912)
T PRK05743 248 VHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHT 327 (912)
T ss_pred ECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEe
Confidence 1000 0
Q ss_pred ----------------------cCCCCCcccccCCcc------------------------ccccccCCcccCCCCccEE
Q psy7266 428 ----------------------EDARGDQCDGCGQLI------------------------NAIELIQPRCKQCSQAPTV 461 (1175)
Q Consensus 428 ----------------------~d~~G~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~~ 461 (1175)
-|.+|.+.+.+|.+. ..+.|.+|+||||++++++
T Consensus 328 aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~ 407 (912)
T PRK05743 328 APGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIF 407 (912)
T ss_pred CCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEE
Confidence 012222222222210 1235789999999999999
Q ss_pred eecccccccchh--HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCC-------------
Q psy7266 462 KSSTQLFLELPK--IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFE------------- 526 (1175)
Q Consensus 462 ~~~~qwfl~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e------------- 526 (1175)
|.++|||+++++ +++.+++.+++.. ++|+..++++.+|| ++++||||||||+||+|||+|+|+
T Consensus 408 r~~~QWFi~~~~~~~k~~~l~~~~~v~-~~P~~~~~r~~~~i-~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~ 485 (912)
T PRK05743 408 RATPQWFISMDKKGLREQALKAIEKVK-WIPAWGKNRIESMV-ENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIE 485 (912)
T ss_pred EecCcccEeCChHHHHHHHHHHHcccE-EEChHHHHHHHHHH-hcCcCccccccceeCceEEEEEECCCCcEeecHHHHH
Confidence 999999999998 9999999998763 34667899999999 589999999999999999996431
Q ss_pred ---------------------------------Cce--EEecCc-------c--ccccCCCCCCCCcceEEEEeeccccc
Q psy7266 527 ---------------------------------NKY--SLSSSP-------S--LVQFLPTATPQSKITLYQFMAKDNVP 562 (1175)
Q Consensus 527 ---------------------------------~~v--vWfds~-------~--~~~~wp~~~~~~~v~~~~~~GkD~i~ 562 (1175)
.+| |||||+ . ...|||.| +|+.|+||++
T Consensus 486 ~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~~~~~~P~D--------l~~~G~Di~r 557 (912)
T PRK05743 486 HVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQRPELGYPAD--------LYLEGSDQHR 557 (912)
T ss_pred HHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCccccCCCce--------EEEecccccc
Confidence 235 999986 1 13689998 9999999995
Q ss_pred --hhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccH
Q psy7266 563 --FHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSW 639 (1175)
Q Consensus 563 --fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~ 639 (1175)
||..+|+++++ . +..||+.|++||||+ .+|+|||||+||+|+|.++++. ||+|++|||+++ .+.++|++|++
T Consensus 558 ~Wf~~~l~~~~~~-~--g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaDalR~~ll~-~~~~~D~~~s~ 632 (912)
T PRK05743 558 GWFQSSLLTSVAT-R--GKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKK-YGADILRLWVAS-TDYSGDVRISD 632 (912)
T ss_pred hHHHHHHHHHHHh-c--CCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHh-cChHHHHHHHHh-cCCCCCeeecH
Confidence 88999999988 3 468899999999997 5999999999999999999996 999999999997 77899999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC------CCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q psy7266 640 QDLATKNNSELLNNLGNFINRALSFIEKNYGST------IPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYIL 713 (1175)
Q Consensus 640 ~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~------~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~ 713 (1175)
+.+.. +.++.+.++| +++|+..+..+. ++...+...|+|++++++.+++.+.++|++|+|+.|++.|+
T Consensus 633 ~~l~~--~~~~~~kl~N----~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~ 706 (912)
T PRK05743 633 EILKQ--VAEAYRRIRN----TLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLH 706 (912)
T ss_pred HHHHH--HHHHHHHHHH----HHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 98865 3456666666 445555443332 22223567899999999999999999999999999999999
Q ss_pred HHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcC
Q psy7266 714 NIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLG 776 (1175)
Q Consensus 714 ~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~ 776 (1175)
+|. +++|+|++..+||.+....... ....+..++..++..+++||+|||||+||+||++|+
T Consensus 707 ~f~~~~ls~~Yie~~K~rly~~~~~~~--~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~ 769 (912)
T PRK05743 707 NFCSVDLSAFYLDIIKDRLYTDAADSL--ARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLP 769 (912)
T ss_pred HHhhhhhceeeheeccHhhhcCCCCcH--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 997 8999999999998654321111 112334456788888999999999999999999996
|
|
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-86 Score=770.90 Aligned_cols=371 Identities=38% Similarity=0.738 Sum_probs=328.8
Q ss_pred EEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 283 ~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
|+||+|+|||||.|||||++ .+|.+|+++||+|++|++|+|++|+|+||++|+.+|+++|++|.++|+++++.|+++|+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~-~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~ 79 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLY-PYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLE 79 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHH-HHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhH-HHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999 66679999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCcc
Q psy7266 363 WFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLI 442 (1175)
Q Consensus 363 ~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~ 442 (1175)
.|||++|.|.||+++.|.++|+++|.+|+++|+||++++.++||+.|++||+|++|+|+||.|++..++|++|+.||..+
T Consensus 80 ~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~ 159 (391)
T PF09334_consen 80 ALNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPL 159 (391)
T ss_dssp HTT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBE
T ss_pred HcCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCC
Q psy7266 443 NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL 522 (1175)
Q Consensus 443 ~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~ 522 (1175)
++.++++|+|..||.+++.+.+++|||+|+++++.|.+|+++.+..|++..++++.+||+++|+||||||...||||+|
T Consensus 160 ~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP- 238 (391)
T PF09334_consen 160 EPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP- 238 (391)
T ss_dssp ECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEET-
T ss_pred ccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceee-
Confidence 9999999999999999999999999999999999999999988655888899999999999999999999999999999
Q ss_pred CCCCCce--EEecCc------------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccC
Q psy7266 523 PGFENKY--SLSSSP------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKV 582 (1175)
Q Consensus 523 ~~~e~~v--vWfds~------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p 582 (1175)
+.+++| ||||++ .|.+||+.+ .+++++||+|+||++||+++||+|+++. ++++|
T Consensus 239 -~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~---~~~~~v~~iGkDi~~fH~i~~pa~l~a~--~~~lP 312 (391)
T PF09334_consen 239 -GDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWAND---SDVEIVHFIGKDIIRFHAIYWPAMLLAA--GLPLP 312 (391)
T ss_dssp -TEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST-----SEEEEEEEGGGHHHHHTHHHHHHHHC--TB---
T ss_pred -ccCCceEEEcchHHHHHHHHhccccccccccchhhhhcccc---CCceEEEEEccchhHHHHHHhHHHHhcc--cCCCC
Confidence 446777 999987 367889555 6889999999999999999999999996 48899
Q ss_pred eEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHH
Q psy7266 583 NHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRAL 662 (1175)
Q Consensus 583 ~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~ 662 (1175)
+++++|||++++|+|||||+||+|+|.++++. ||+|++||||++.+|.++|.+|++++|.+++|++|+|++||+++|++
T Consensus 313 ~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~~ 391 (391)
T PF09334_consen 313 RRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRVL 391 (391)
T ss_dssp SEEEEE--EEETTCCEETTTTESSBHHHHHHH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred CEEEeeeeEEECCeeccccCCcccCHHHHHHh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhccC
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999999974
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-82 Score=812.37 Aligned_cols=510 Identities=15% Similarity=0.183 Sum_probs=404.3
Q ss_pred cccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcC
Q psy7266 241 SSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVN 319 (1175)
Q Consensus 241 ~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G 319 (1175)
..++..|++.++|++ +++|++.++|+.... ...++++|+|++||||+||.|||||+++.++ +|+++||+||+|
T Consensus 66 ~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~-----~~~~~~~Fv~~~gPPyanG~lHiGHal~~ti-kDii~Ry~rm~G 139 (1205)
T PTZ00427 66 TGVSENPNIVEEEEKVLKYWKSIDAFNTSNK-----LAKNKKAYIFYDGPPFATGLPHYGHLLAGII-KDCVTRYFYQCG 139 (1205)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCcccCcc-----ccCCCCcEEEecCCCCCCCCcchhHHHHHHH-HHHHHHHHHcCC
Confidence 356778999999999 999999999976431 1135678999999999999999999999998 999999999999
Q ss_pred CCcccccccCCcchHHHHHHHH-cCCC----------------chhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHH
Q psy7266 320 RNTLYVSGTDEYGTATETKALE-EGLT----------------PRQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQT 380 (1175)
Q Consensus 320 ~~v~~~~G~D~~G~~ie~~a~~-~g~~----------------p~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~ 380 (1175)
|+|+|++||||||+|||..+++ .|++ |.+++++|.+.+++++++||+++|| .++|+++.|.
T Consensus 140 ~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~ 219 (1205)
T PTZ00427 140 FSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFM 219 (1205)
T ss_pred CeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHH
Confidence 9999999999999999999874 3432 3556777889999999999966665 5689999999
Q ss_pred HHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec-----------------------------------------
Q psy7266 381 EIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE----------------------------------------- 419 (1175)
Q Consensus 381 ~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~----------------------------------------- 419 (1175)
+.|+++|.+|+++|+||++.++++|||.|+|+||+.||+
T Consensus 220 ~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1205)
T PTZ00427 220 ESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKY 299 (1205)
T ss_pred HHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccce
Confidence 999999999999999999999999999999999998761
Q ss_pred -------------------------c-c-C-------------------CC-------c---------------------
Q psy7266 420 -------------------------G-V-C-------------------PK-------C--------------------- 425 (1175)
Q Consensus 420 -------------------------g-~-c-------------------P~-------c--------------------- 425 (1175)
+ . . |. +
T Consensus 300 ~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~ 379 (1205)
T PTZ00427 300 SVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKEL 379 (1205)
T ss_pred eeccccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhh
Confidence 0 0 0 21 0
Q ss_pred -------------------------------------cc---------------------------cC-----CCC----
Q psy7266 426 -------------------------------------RY---------------------------ED-----ARG---- 432 (1175)
Q Consensus 426 -------------------------------------~~---------------------------~d-----~~G---- 432 (1175)
+. +| ..|
T Consensus 380 ~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~ 459 (1205)
T PTZ00427 380 KWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDP 459 (1205)
T ss_pred cccccccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCc
Confidence 00 00 001
Q ss_pred -------------CcccccCCc----c--------------------ccccccCCcccCCCCccEEeecccccccchhHH
Q psy7266 433 -------------DQCDGCGQL----I--------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIE 475 (1175)
Q Consensus 433 -------------~~c~~~g~~----~--------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~ 475 (1175)
.+.+.+|.+ + ..+.|.+|+|||||+|++++.++|||+++++++
T Consensus 460 ~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k 539 (1205)
T PTZ00427 460 EKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNST 539 (1205)
T ss_pred cccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHH
Confidence 111111110 0 123578999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCc-hH-HHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCC--------------------------
Q psy7266 476 DKLQSWVSETSDQWSS-NA-RVICKAWLKDGLKPRCITRDLKWGIPVPLPGFEN-------------------------- 527 (1175)
Q Consensus 476 ~~l~~~~~~~~~~~~~-~~-~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~-------------------------- 527 (1175)
+.+++.+++. .|.| .+ ++++.+|| ++++||||||||+||||||+|.|++
T Consensus 540 ~~~l~~~~~i--~w~P~~~~~~r~~~wl-~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh 616 (1205)
T PTZ00427 540 NELVKNNETT--YWIPAHIKEKKFHNWI-KDAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLH 616 (1205)
T ss_pred HHHHHcCCcc--EEeCchhhHhHHHHHH-hcCccceeeeccccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhc
Confidence 9988876554 3755 56 58999999 6899999999999999999886420
Q ss_pred ------------------------ce--EEecCc-------c---------ccccCCCCCCCCcceEEEEeeccccchhH
Q psy7266 528 ------------------------KY--SLSSSP-------S---------LVQFLPTATPQSKITLYQFMAKDNVPFHS 565 (1175)
Q Consensus 528 ------------------------~v--vWfds~-------~---------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~ 565 (1175)
+| |||||+ . |+++||+| +...|.||+++|-
T Consensus 617 ~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD--------~i~eG~Dq~rgWf 688 (1205)
T PTZ00427 617 RHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPAD--------FIAEGLDQTRGWF 688 (1205)
T ss_pred ccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCce--------EEEEecchhccHH
Confidence 26 999997 2 33578887 8899999998765
Q ss_pred hHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCC-CCCCccccHHHHH
Q psy7266 566 IMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRP-ENQDTSFSWQDLA 643 (1175)
Q Consensus 566 ~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~-~~~D~~f~~~~~~ 643 (1175)
.....+-.++ .+..|+++|++||||+ .+|+|||||+||+|+|.++++. ||+|++||||++... .++|++|+++.+.
T Consensus 689 ~s~l~~s~~l-~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~k-YGADaLR~~Lls~~~~~~~Dl~Fse~~v~ 766 (1205)
T PTZ00427 689 YTLLVISTLL-FDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDK-YGADSLRLYLINSVAVRAENLKFQEKGVN 766 (1205)
T ss_pred HHHHHHHHHh-cCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHh-cCCcHHHHHHHhcCCCCCcccccCHHHHH
Confidence 4432211111 2467779999999997 5999999999999999999996 999999999998755 4789999999987
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhcC--------CC--CC---CCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q psy7266 644 TKNNSELLNNLGNFINRALSFIEKNYG--------ST--IP---EISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIR 710 (1175)
Q Consensus 644 ~~~n~~l~~~l~n~~~r~~~~~~~~~~--------~~--~p---~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~ 710 (1175)
+..++ ++++++|.. +|+..+.. +. .+ .......|+||+++++.+++.+.++|++|+|+.|++
T Consensus 767 e~~r~-~l~klwN~~----rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~ 841 (1205)
T PTZ00427 767 EVVKS-FILPFYHSF----RFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLP 841 (1205)
T ss_pred HHHHH-HHHHHHHHH----HHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 65544 446666643 44333221 11 01 112466899999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 711 YILNIS-RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 711 ~i~~~~-~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
.|++|+ ++|||||+.++++.+...+.. ...+++++++++|+.+++||+|||||+||+||++|+.
T Consensus 842 ~i~~Fi~~lsnwYIe~~K~rl~~~~~~~---~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 842 KLLQFIENLTNWYIRLNRDRMRGSLGEE---NCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred HHHHHHHHhccHHHHHcchhhccCCCcH---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 999996 599999999998654321111 2346778889999999999999999999999999964
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-82 Score=808.67 Aligned_cols=510 Identities=16% Similarity=0.190 Sum_probs=411.1
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
..+.+++..++|.+ +++|++.++|+.... ...++++|+|++||||+||.|||||+++.+| .|+++||+||+||
T Consensus 19 ~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~-----~~~~~~~f~l~dgPPyanG~lHiGHaln~~l-kDii~Ry~rm~G~ 92 (961)
T PRK13804 19 AFPMRAGLPQKEPEIQARWEEIDLYKKLRE-----QAKGRPKFVLHDGPPYANGNIHIGHALNKIL-KDVIVRSKQMLGF 92 (961)
T ss_pred CCCCCCChHHhHHHHHHHHHHCCCcccccc-----ccCCCCcEEEeCCCCCCCCCccHHHHHHHHH-HHHHHHHHHhcCC
Confidence 44557899999999 999999999976431 1246788999999999999999999999998 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHHc----CCCc------------hhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALEE----GLTP------------RQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEI 382 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~~----g~~p------------~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~ 382 (1175)
+|+|++||||||+|||.++++. |.+. .++++++.+.+++++++||++.||.+ .|++|.|.+.
T Consensus 93 ~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~ 172 (961)
T PRK13804 93 DANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEAR 172 (961)
T ss_pred cccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHH
Confidence 9999999999999999988654 3432 23556678899999999999999865 6999999999
Q ss_pred HHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec-----------------c------cC-----------------
Q psy7266 383 VQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE-----------------G------VC----------------- 422 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~-----------------g------~c----------------- 422 (1175)
++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+ + .+
T Consensus 173 ~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~a 252 (961)
T PRK13804 173 IAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRA 252 (961)
T ss_pred HHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeE
Confidence 9999999999999999999999999999999997664 1 00
Q ss_pred ----CCccc---------------------------------------c-------------------------------
Q psy7266 423 ----PKCRY---------------------------------------E------------------------------- 428 (1175)
Q Consensus 423 ----P~c~~---------------------------------------~------------------------------- 428 (1175)
|...| .
T Consensus 253 iav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pv 332 (961)
T PRK13804 253 ISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPV 332 (961)
T ss_pred EEECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEE
Confidence 11100 0
Q ss_pred -----------------------------------------CCCCCcccccCCc-------c------------------
Q psy7266 429 -----------------------------------------DARGDQCDGCGQL-------I------------------ 442 (1175)
Q Consensus 429 -----------------------------------------d~~G~~c~~~g~~-------~------------------ 442 (1175)
|..|.+.+.+|.+ +
T Consensus 333 i~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~ 412 (961)
T PRK13804 333 LDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIE 412 (961)
T ss_pred EecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHh
Confidence 0011111111210 0
Q ss_pred -------ccccccCCcccCCCCccEEeecccccccchh-------HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcE
Q psy7266 443 -------NAIELIQPRCKQCSQAPTVKSSTQLFLELPK-------IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPR 508 (1175)
Q Consensus 443 -------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw 508 (1175)
..+.|.+|+|||||+++++|.++|||++++. +++.+++.++++. ..|+..++++.+|| ++++||
T Consensus 413 ~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~~v~-~~P~~~~~r~~~~i-~~~~DW 490 (961)
T PRK13804 413 AGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTR-FVPAAGQNRLYNMI-EDRPDW 490 (961)
T ss_pred CCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHhccE-EECHHHHHHHHHHH-hcCccc
Confidence 1234789999999999999999999999998 9999999998763 34667899999999 689999
Q ss_pred eeeccCCCCcccCCCCC------------------------------------------------CCce--EEecCc---
Q psy7266 509 CITRDLKWGIPVPLPGF------------------------------------------------ENKY--SLSSSP--- 535 (1175)
Q Consensus 509 ~ISR~~~WG~piP~~~~------------------------------------------------e~~v--vWfds~--- 535 (1175)
||||||+||+|||+|+| +.+| |||||+
T Consensus 491 cISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~ 570 (961)
T PRK13804 491 VISRQRAWGVPIPIFVAEDGEILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTH 570 (961)
T ss_pred eeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCc
Confidence 99999999999999643 1245 999997
Q ss_pred ----cc--cccCCCCCCCCcceEEEEeeccccc--hhHhHHHHHHHHhCC-CcccCeEEEeeceee-cCCCcccccCCCc
Q psy7266 536 ----SL--VQFLPTATPQSKITLYQFMAKDNVP--FHSIMFPATLVAAGD-QYTKVNHIMATEYLN-YEDGKFSKSRGTG 605 (1175)
Q Consensus 536 ----~~--~~~wp~~~~~~~v~~~~~~GkD~i~--fh~~~~pa~l~~~~~-~~~~p~~i~~~g~l~-~~G~KMSKS~GN~ 605 (1175)
+. ..+||.| +|++|+||++ ||+.+. ++... +..||++|++|||++ .+|+|||||+||+
T Consensus 571 ~~~~~~~~~~~~PaD--------~~~eG~Di~rgWF~s~ll----~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNv 638 (961)
T PRK13804 571 AFVLEDRPDLKWPAD--------LYLEGSDQHRGWFNSSLL----ESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNT 638 (961)
T ss_pred cccccCCcccCCCce--------EEEEEcccccHHHHHHHH----HHHHhcCCCChhhEEEeccEECCCCCCccCCCCCc
Confidence 11 2368988 9999999995 887543 33332 356789999999997 5999999999999
Q ss_pred cCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCChhhH
Q psy7266 606 VFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGS--TIPEISPIHEDF 683 (1175)
Q Consensus 606 v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~--~~p~~~~~~~d~ 683 (1175)
|+|.++++. ||+|++|||+++ .+.++|++|+++.+.. ++++++.++|.+.+++..+.....+ .++...+...|+
T Consensus 639 IdP~~ii~~-yGaD~lRl~lls-~~~~~D~~fs~~~l~~--~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~ 714 (961)
T PRK13804 639 VSPQDVIKQ-SGADILRLWVAS-VDYSDDQRIGKEILKQ--VSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELER 714 (961)
T ss_pred CCHHHHHHh-cCHHHHHHHHHh-CCCCCCcccCHHHHHH--HHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHH
Confidence 999999996 999999999997 5788999999999864 4678888999876655544332211 112234567899
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHcc
Q psy7266 684 LLLALINRELSAYYSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLS 761 (1175)
Q Consensus 684 ~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~ 761 (1175)
|++++++.+++.+.++|++|+|++|++.|++|+ ++||+|++..+||.+..... + .....+..++..+++.+++||+
T Consensus 715 wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~-~-~~r~~~~~vL~~il~~l~~lLa 792 (961)
T PRK13804 715 YMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPS-S-LRRRAAQTVFYEIFVRLTKWLA 792 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCC-c-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 68999999999996643211 1 1223455667888999999999
Q ss_pred chhhHHHHHHHHHcCC
Q psy7266 762 PYMPSTASTIASQLGA 777 (1175)
Q Consensus 762 PfmP~~se~i~~~L~~ 777 (1175)
|||||+||+||++|+.
T Consensus 793 Pi~P~~aEeiw~~L~~ 808 (961)
T PRK13804 793 PILPFTAEEAWLYRYP 808 (961)
T ss_pred hhhhhhHHHHHHhccc
Confidence 9999999999999984
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-82 Score=812.40 Aligned_cols=507 Identities=20% Similarity=0.268 Sum_probs=412.3
Q ss_pred cCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 243 KSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 243 ~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
.+.+|++.++|++ +++|++.++|+.... ...++++|+|++|||||||.|||||+++.++ +|+++||+||+||+
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~-----~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~-~D~~~Ry~rm~G~~ 75 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKK-----LNKGKPEFIFHDGPPYANGSIHLGHALNKIL-KDIILRYKTMQGFN 75 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhh-----ccCCCCCeEEecCCCCCCCCccHHHHHHHHH-HHHHHHHHHcCCCc
Confidence 3457999999999 999999999975321 1235788999999999999999999999998 99999999999999
Q ss_pred cccccccCCcchHHHHHHHHc-CCC------c----------hhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHH
Q psy7266 322 TLYVSGTDEYGTATETKALEE-GLT------P----------RQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEI 382 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~~~-g~~------p----------~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~ 382 (1175)
|+|++|||+||+|||.++++. |++ + .++++++.+.+++++++||+++||.+ .|++|.|.+.
T Consensus 76 v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~ 155 (861)
T TIGR00392 76 VTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEES 155 (861)
T ss_pred cCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHH
Confidence 999999999999999999865 664 3 36777889999999999999998865 6999999999
Q ss_pred HHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc-c------C-------C-------------------------
Q psy7266 383 VQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG-V------C-------P------------------------- 423 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g-~------c-------P------------------------- 423 (1175)
++++|.+|+++|+||++.++++|||.|+|+|||.+|+. . . |
T Consensus 156 ~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~T 235 (861)
T TIGR00392 156 QWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWT 235 (861)
T ss_pred HHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCccc
Confidence 99999999999999999999999999999999987741 0 0 0
Q ss_pred --Cccc-----c--------------------------------------------------------------------
Q psy7266 424 --KCRY-----E-------------------------------------------------------------------- 428 (1175)
Q Consensus 424 --~c~~-----~-------------------------------------------------------------------- 428 (1175)
+|.+ +
T Consensus 236 l~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~ 315 (861)
T TIGR00392 236 LPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVI 315 (861)
T ss_pred ccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEe
Confidence 0000 0
Q ss_pred ---------------------------------------CCCCCccccc----C---Ccc--------------------
Q psy7266 429 ---------------------------------------DARGDQCDGC----G---QLI-------------------- 442 (1175)
Q Consensus 429 ---------------------------------------d~~G~~c~~~----g---~~~-------------------- 442 (1175)
|.+|...+.. | .+.
T Consensus 316 ~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~ 395 (861)
T TIGR00392 316 GGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGL 395 (861)
T ss_pred CCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCC
Confidence 0000000000 0 000
Q ss_pred ----ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCc
Q psy7266 443 ----NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGI 518 (1175)
Q Consensus 443 ----~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~ 518 (1175)
..++|.+|+|||||++++++.++||||+++++++.++++++++. .+|...++++.+|| ++++||||||||+||+
T Consensus 396 l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~~i~-~~P~~~~~~~~~~l-~~l~DW~ISRqr~WG~ 473 (861)
T TIGR00392 396 LLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVN-WVPEWGEGRFGNWL-ENRPDWCISRQRYWGI 473 (861)
T ss_pred eeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhCCcE-EECchHHHHHHHHH-hCCCcceeeccccCCC
Confidence 01246789999999999999999999999999999999998763 46778899999999 5899999999999999
Q ss_pred ccCCCCCC---------------------------------------------------Cce--EEecCc----------
Q psy7266 519 PVPLPGFE---------------------------------------------------NKY--SLSSSP---------- 535 (1175)
Q Consensus 519 piP~~~~e---------------------------------------------------~~v--vWfds~---------- 535 (1175)
|||+|.|+ .+| |||||+
T Consensus 474 pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~ 553 (861)
T TIGR00392 474 PIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYP 553 (861)
T ss_pred eeeEEEECCCCCCcCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCC
Confidence 99997643 236 999996
Q ss_pred ----cccccCCCCCCCCcceEEEEeeccccc--hhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCc
Q psy7266 536 ----SLVQFLPTATPQSKITLYQFMAKDNVP--FHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFG 608 (1175)
Q Consensus 536 ----~~~~~wp~~~~~~~v~~~~~~GkD~i~--fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~ 608 (1175)
+|.+|||.| ++++|+||++ ||.++|+++++. +..||+.+++||||+ .+|+|||||+||+|+|
T Consensus 554 ~~~~~f~~~~P~d--------~~i~G~Di~r~Wf~~~~~~~~~~~---~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p 622 (861)
T TIGR00392 554 FENEKFKEVFPAD--------FILEGSDQTRGWFYSSLAIGTALF---GQAPYKNVITHGFTLDEKGRKMSKSLGNVVDP 622 (861)
T ss_pred CCcchhhccCCce--------EEEEecchhccHHHHHHHHHHHHc---CCCChHhhEecceEECCCCCCcCCCCCCCCCH
Confidence 246789998 9999999998 899999987763 367889999999997 5999999999999999
Q ss_pred hhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC------CCCCCCChhh
Q psy7266 609 NNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGST------IPEISPIHED 682 (1175)
Q Consensus 609 ~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~------~p~~~~~~~d 682 (1175)
.++++. ||+|++||||++. +.++|++|+++.+... ++.+.|.++|+++++..+ .+..+. ++...+...|
T Consensus 623 ~d~i~~-yGaDalR~~ll~~-~~~~D~~fs~~~l~~~-~~~~~n~l~N~~~~~~~~--~~l~~~~~~~~~~~~~~l~~~d 697 (861)
T TIGR00392 623 LKVINK-YGADILRLYVASS-DPWEDLRFSDEILKQV-VEKYRKIRWNTYRFLLTY--ANLDKFDPLFNSVAVEKFPEED 697 (861)
T ss_pred HHHHHH-cCHHHHHHHHHhC-CCCCCceECHHHHHHH-HHHHHHHHHHHHHHHHHH--hccccCCccccccccccCCHHH
Confidence 999996 9999999999998 8899999999998642 334555555554444310 222211 1222356789
Q ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHHHHHHhcCc--ccccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy7266 683 FLLLALINRELSAYYSVLDKAKLRDGIRYILNISR--YCNQYMQTQQP--WVLFKGSPEQKSRASTVLGILCQVSYLLSL 758 (1175)
Q Consensus 683 ~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~--~~n~yi~~~kp--w~l~k~~~~~~~~~~~vl~~~~~~l~~l~~ 758 (1175)
+|++++++.+++.+.++|++|+|+.|++.|++|+. ++|+|++..+| |...++ .+ .+ ++..++..+++.+++
T Consensus 698 ~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~--~~-~~--~~~~~l~~~l~~l~~ 772 (861)
T TIGR00392 698 RWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKD--ND-KR--AAQTTLYYALLTLVR 772 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCC--HH-HH--HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999963 79999999987 544332 11 12 455667889999999
Q ss_pred HccchhhHHHHHHHHHcCCC
Q psy7266 759 LLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 759 lL~PfmP~~se~i~~~L~~~ 778 (1175)
||+|||||+||+||++|+..
T Consensus 773 lL~P~~P~~aeeiw~~L~~~ 792 (861)
T TIGR00392 773 LLAPFLPHTAEEIYQNLPGG 792 (861)
T ss_pred HHHHhhhhhHHHHHHhcccc
Confidence 99999999999999999753
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-81 Score=796.52 Aligned_cols=501 Identities=17% Similarity=0.218 Sum_probs=402.7
Q ss_pred ChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCccccc
Q psy7266 248 TSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVS 326 (1175)
Q Consensus 248 ~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~ 326 (1175)
+....|.+ +++|++.++|+.... ...+++|+|++||||+||.|||||+++.++ +|+++||+||+||+|+|++
T Consensus 4 ~~~~~E~~~~~~W~~~~~y~~~~~------~~~~~~f~i~~~PPy~nG~lHiGHa~~~~l-kDii~Ry~rm~G~~v~~~p 76 (974)
T PLN02843 4 NSVTREPEIQKLWEENQVYKRVSD------RNNGESFTLHDGPPYANGDLHIGHALNKIL-KDFINRYQLLQGKKVHYVP 76 (974)
T ss_pred ChHHhhHHHHHHHHHCCCcccccc------ccCCCCEEEeCCCCCCCCCcchhHHHHHHH-HHHHHHHHHhcCCccccCC
Confidence 55678888 999999999976431 123467999999999999999999999998 9999999999999999999
Q ss_pred ccCCcchHHHHHHHH-------cCCCchhh-------HHHHHHHHHHHHhhcccccccc--CCCCCHHHHHHHHHHHHHH
Q psy7266 327 GTDEYGTATETKALE-------EGLTPRQI-------CDKYFAIHREVYEWFEIDFDYF--GRTSTPQQTEIVQHLFDRV 390 (1175)
Q Consensus 327 G~D~~G~~ie~~a~~-------~g~~p~~~-------~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~~~~v~~~f~~L 390 (1175)
||||||+|||.++++ .+++|.++ ++++.+.+++++++||++.||. ++|++|.|.+.++++|.+|
T Consensus 77 G~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l 156 (974)
T PLN02843 77 GWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQM 156 (974)
T ss_pred ccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHH
Confidence 999999999998753 23455554 4556677799999999977764 5799999999999999999
Q ss_pred HHcCCEEeceEEEeeeCCCCcccccceeccc----C--------------------------------------------
Q psy7266 391 HKAGFTSSASVEQLHCAQCDRFLADRFVEGV----C-------------------------------------------- 422 (1175)
Q Consensus 391 ~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~----c-------------------------------------------- 422 (1175)
+++|+||++.++|+|||.|+|+|||.+|+.. .
T Consensus 157 ~~~GlIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~A 236 (974)
T PLN02843 157 FLNGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAA 236 (974)
T ss_pred HHCCCEEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcE
Confidence 9999999999999999999999999765410 0
Q ss_pred ----CC--------------------------------------------------------------------------
Q psy7266 423 ----PK-------------------------------------------------------------------------- 424 (1175)
Q Consensus 423 ----P~-------------------------------------------------------------------------- 424 (1175)
|.
T Consensus 237 iaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~ 316 (974)
T PLN02843 237 VAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIH 316 (974)
T ss_pred EEECCCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEEC
Confidence 10
Q ss_pred ------------------------------ccc----------------cCCCCCcccccCCc----c------------
Q psy7266 425 ------------------------------CRY----------------EDARGDQCDGCGQL----I------------ 442 (1175)
Q Consensus 425 ------------------------------c~~----------------~d~~G~~c~~~g~~----~------------ 442 (1175)
+|. -|.+|.+.+.+|.+ +
T Consensus 317 P~~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L 396 (974)
T PLN02843 317 PLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEAL 396 (974)
T ss_pred CCCCCceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHH
Confidence 000 02233333322211 0
Q ss_pred ---------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeecc
Q psy7266 443 ---------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRD 513 (1175)
Q Consensus 443 ---------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~ 513 (1175)
+.+.|.+|+||||++++++|.++|||++++.+++++++.++++. .+|...++++.+|| ++++|||||||
T Consensus 397 ~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~-~~P~~~~~r~~~~i-~~~~DWcISRQ 474 (974)
T PLN02843 397 DEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVK-WIPAQGENRIRAMV-SGRSDWCISRQ 474 (974)
T ss_pred HHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccE-EEChHHHHHHHHHH-hcCcceeeeec
Confidence 12358899999999999999999999999999999999998763 34667899999999 68999999999
Q ss_pred CCCCcccCCCCC--------------------------------------------------CCce--EEecCc------
Q psy7266 514 LKWGIPVPLPGF--------------------------------------------------ENKY--SLSSSP------ 535 (1175)
Q Consensus 514 ~~WG~piP~~~~--------------------------------------------------e~~v--vWfds~------ 535 (1175)
|+||+|||+|.+ +.+| |||||+
T Consensus 475 r~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~ 554 (974)
T PLN02843 475 RTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGV 554 (974)
T ss_pred cccccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHH
Confidence 999999997632 1256 999998
Q ss_pred ---cccccCCCCCCCCcceEEEEeeccccc--hhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCch
Q psy7266 536 ---SLVQFLPTATPQSKITLYQFMAKDNVP--FHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGN 609 (1175)
Q Consensus 536 ---~~~~~wp~~~~~~~v~~~~~~GkD~i~--fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~ 609 (1175)
....+||+| +++.|+||++ ||..+|+++.. . +..||+++++|||++ .+|+|||||+||+|+|.
T Consensus 555 ~~~~~~~~~PaD--------l~~eG~Di~rgWf~s~l~~~~~~-~--g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~ 623 (974)
T PLN02843 555 LGSREGLSYPAD--------LYLEGSDQHRGWFQSSLLTSVAT-K--GKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPR 623 (974)
T ss_pred hccccccCCCce--------eeeeeccccchHHHHHHHHHHHh-c--CCCccceEEEeccEECCCCCCcCCCCCCcCCHH
Confidence 124579998 9999999998 88999987743 3 467789999999995 58999999999999999
Q ss_pred hhhhc--------CCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCC
Q psy7266 610 NAKDT--------GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGST-----IPEI 676 (1175)
Q Consensus 610 d~i~~--------~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~-----~p~~ 676 (1175)
++++. .||+|++|||+++ ...++|++|+.+.+... .+.+++++|.+ +|+..+..+. ++..
T Consensus 624 ~vi~~~~~~~~~~~yGaD~lR~~l~~-~~~~~d~~~s~~~l~~~--~~~~~kl~n~~----rf~lgnl~~~~~~~~~~~~ 696 (974)
T PLN02843 624 LVIEGGKNQKQEPAYGADVLRLWVAS-VDYTGDVLIGPQILKQM--SDIYRKLRGTL----RYLLGNLHDWKPDNAVPYE 696 (974)
T ss_pred HHHhhccccccccccChHHHHHHHHh-cccCCCceeCHHHHHHH--HHHHHHHHHHH----HHHHhCccCCCcccccCcc
Confidence 99982 2999999999997 56778999999988643 34556666644 4444443332 2223
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHH
Q psy7266 677 SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSY 754 (1175)
Q Consensus 677 ~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~ 754 (1175)
.+...|+|++++++.+++.+.++|++|+|+.|++.|++| .++||+||+..+||.+.+... +..+ ..+..++..++.
T Consensus 697 ~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~-~~~r-~~~qtvL~~iLe 774 (974)
T PLN02843 697 DLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTT-SFTR-RSCQTVLAAHLL 774 (974)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCC-HHHH-HHHHHHHHHHHH
Confidence 345689999999999999999999999999999999998 689999999999998765321 1111 223344567778
Q ss_pred HHHHHccchhhHHHHHHHHHcCC
Q psy7266 755 LLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 755 ~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
.+++||+|||||+||+||++|+.
T Consensus 775 ~l~~LLaPimPf~aEEiw~~L~~ 797 (974)
T PLN02843 775 SLLRAIAPILPHLAEDAWQNLPF 797 (974)
T ss_pred HHHHHHhhhhhHHHHHHHHhccc
Confidence 88999999999999999999975
|
|
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-81 Score=759.62 Aligned_cols=508 Identities=19% Similarity=0.274 Sum_probs=411.7
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
..+.++++.+.|+. +++|++.++|+.... .-..+++.|++.++|||+||.+|||||.+.+| .|++.||++|+||
T Consensus 13 ~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~----~~~~g~~~FvfhDGPPyANG~iHiGHalnKil-KDiI~Ry~~m~G~ 87 (933)
T COG0060 13 DFPMRANLPKKEPKILKFWEENDIYEKIRE----ERNKGKPKFVLHDGPPYANGNIHIGHALNKIL-KDIIVRYKTMQGY 87 (933)
T ss_pred CCCccCChhhcCHHHHHHHHHhhHHHHHHH----HHhCCCCcEEEeCCCCCCCCCcchhhhHHHhh-hhhhhhhhcccCC
Confidence 45668899999999 999999999854220 01247889999999999999999999999999 9999999999999
Q ss_pred CcccccccCCcchHHHHHHH-HcCCC---------------chhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKAL-EEGLT---------------PRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEI 382 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~-~~g~~---------------p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~ 382 (1175)
+|.+++||||||+|||.+++ +.|+. |++++.++.+.+++++++||+..||.. .|+++.|++.
T Consensus 88 ~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~ 167 (933)
T COG0060 88 DVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEES 167 (933)
T ss_pred cCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHH
Confidence 99999999999999998876 44532 223344566888999999999888864 6999999999
Q ss_pred HHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc----------------------c-------C-----------
Q psy7266 383 VQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG----------------------V-------C----------- 422 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g----------------------~-------c----------- 422 (1175)
++++|.+|+++|+||++.++++||++|+|.||+.||+- + -
T Consensus 168 ~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aia 247 (933)
T COG0060 168 VWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIA 247 (933)
T ss_pred HHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeE
Confidence 99999999999999999999999999999999987640 0 0
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 423 -------------------------------------------------------------------------------- 422 (1175)
Q Consensus 423 -------------------------------------------------------------------------------- 422 (1175)
T Consensus 248 v~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG 327 (933)
T COG0060 248 VHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTG 327 (933)
T ss_pred eCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCcc
Confidence
Q ss_pred -----CCcccc-----------------CCCCCccccc----CCcc--------------------ccccccCCcccCCC
Q psy7266 423 -----PKCRYE-----------------DARGDQCDGC----GQLI--------------------NAIELIQPRCKQCS 456 (1175)
Q Consensus 423 -----P~c~~~-----------------d~~G~~c~~~----g~~~--------------------~~~el~~~~c~r~~ 456 (1175)
|++|.+ |.+|...+.. |.++ ...+|++||||||+
T Consensus 328 ~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~k 407 (933)
T COG0060 328 LVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTK 407 (933)
T ss_pred ceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCC
Confidence 111100 1222222211 1111 12468999999999
Q ss_pred CccEEeecccccccchhHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCC---------
Q psy7266 457 QAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFE--------- 526 (1175)
Q Consensus 457 ~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e--------- 526 (1175)
+|+++|.++|||++++++++++++.+++. .| |...++++.+|+ ++.+||||||||+||+|||+|.|+
T Consensus 408 tPlIyRAt~QWFi~v~~~r~~~l~~i~~v--~w~P~~~~~R~~~mv-e~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~ 484 (933)
T COG0060 408 TPLIYRATPQWFVSVDKLRDKMLKEINKV--NWVPDWGKNRFGNMV-ENRPDWCISRQRYWGVPIPVWYCKETGEILVIT 484 (933)
T ss_pred CeeEEeecchheeEHHHHHHHHHHHHhcc--eEEChhHHHHHHHHH-cCCCcceeeccccCCCceeEEEECCCCCeeccH
Confidence 99999999999999999999999877765 46 446789999999 799999999999999999998531
Q ss_pred -----------------------------------------Cce--EEecCc--------c-ccccCCC---CCCCCcce
Q psy7266 527 -----------------------------------------NKY--SLSSSP--------S-LVQFLPT---ATPQSKIT 551 (1175)
Q Consensus 527 -----------------------------------------~~v--vWfds~--------~-~~~~wp~---~~~~~~v~ 551 (1175)
.+| |||||+ . -+.+||. |
T Consensus 485 ~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD------- 557 (933)
T COG0060 485 EELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFAD------- 557 (933)
T ss_pred HHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccCCcccccCccccCc-------
Confidence 245 999998 1 1234555 5
Q ss_pred EEEEeecccc--chhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhc
Q psy7266 552 LYQFMAKDNV--PFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYV 628 (1175)
Q Consensus 552 ~~~~~GkD~i--~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~ 628 (1175)
++.-|.|+. |||+.+..++++. +..|++.+++|||+ +.+|+|||||+||+|+|.+++++ ||||+||+|+++.
T Consensus 558 -~~lEGsDQ~RGWF~Ssl~~s~a~~---~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~-yGADiLRLwv~ss 632 (933)
T COG0060 558 -FYLEGSDQTRGWFYSSLLTSTALF---GRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVASS 632 (933)
T ss_pred -EEEEeccccchhHHHHHHHHHHHc---CCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHh-hCchheeeeeeec
Confidence 788899998 7988876655443 47788999999998 58899999999999999999996 9999999999995
Q ss_pred CCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHh
Q psy7266 629 RPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE------ISPIHEDFLLLALINRELSAYYSVLDK 702 (1175)
Q Consensus 629 ~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~------~~~~~~d~~l~~~l~~~~~~~~~~~e~ 702 (1175)
. .+.|+.|+++.+. ...+.++.++| +.+|+..+.++.-|. ..+..+|+|++++++.+++.+.++|++
T Consensus 633 d-~~~dl~~s~~il~--~~~~~~r~irN----t~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~ 705 (933)
T COG0060 633 D-YWEDLRFSDEILK--QVREVYRKIRN----TYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYEN 705 (933)
T ss_pred C-chhccccCHHHHH--HHHHHHHHHHH----HHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 5 8899999999954 34566677777 556665554443332 245678999999999999999999999
Q ss_pred ccHHHHHHHHHHHH--HHHHHHHHhcCcccccC-CChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCc
Q psy7266 703 AKLRDGIRYILNIS--RYCNQYMQTQQPWVLFK-GSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASH 779 (1175)
Q Consensus 703 ~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k-~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~ 779 (1175)
|+|+.+++.|++|+ +++|+||+..|.+.+.. .+..++ .++..++..++..++++|+||+||+||+||+.|..+.
T Consensus 706 y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~r---raa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~ 782 (933)
T COG0060 706 YDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDR---RAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER 782 (933)
T ss_pred cCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHH---HHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCC
Confidence 99999999999995 99999999999988765 332333 3445566899999999999999999999999998763
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-79 Score=784.46 Aligned_cols=485 Identities=17% Similarity=0.227 Sum_probs=395.7
Q ss_pred HHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccC
Q psy7266 251 EIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTD 329 (1175)
Q Consensus 251 ~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D 329 (1175)
+||++ |++|++.++|+... +++++|+|+.||||+||.|||||+++.++ +|+++||+||+|++|+|++|||
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~--------~~~~kf~i~~ppPy~nG~lH~GH~~~~~~-~D~~aRy~Rm~G~~vl~p~G~d 72 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADP--------DDREKFFLTMAYPYLNGVMHAGHCRTFTI-PEVSARFERMKGKNVLFPLGFH 72 (938)
T ss_pred hHHHHHHHHHHhCCCcccCC--------CCCCceEEecCCCCCCCCcccchhhhhhH-HHHHHHHHHhcCCccCCCCccC
Confidence 58899 99999999998643 24678999999999999999999999888 9999999999999999999999
Q ss_pred CcchHHHHHHHHc---------------C---------CCchhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHH
Q psy7266 330 EYGTATETKALEE---------------G---------LTPRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIV 383 (1175)
Q Consensus 330 ~~G~~ie~~a~~~---------------g---------~~p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v 383 (1175)
+||+||+..|++. + .+|.+++++|...+++++++||+++||.+ .|+||.|.++|
T Consensus 73 ~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v 152 (938)
T TIGR00395 73 VTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFI 152 (938)
T ss_pred CCCCchHHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHH
Confidence 9999999887652 1 34567778999999999999999999976 69999999999
Q ss_pred HHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc---------------------------cC-------------C
Q psy7266 384 QHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG---------------------------VC-------------P 423 (1175)
Q Consensus 384 ~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g---------------------------~c-------------P 423 (1175)
+|+|.+|+++|+||++.++++|||.|+|+|+|++++. |. |
T Consensus 153 ~~~f~~L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P 232 (938)
T TIGR00395 153 EWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNP 232 (938)
T ss_pred HHHHHHHHHCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECC
Confidence 9999999999999999999999999999999975520 00 1
Q ss_pred Cc-----------------------------------------------------------------------------c
Q psy7266 424 KC-----------------------------------------------------------------------------R 426 (1175)
Q Consensus 424 ~c-----------------------------------------------------------------------------~ 426 (1175)
.. +
T Consensus 233 ~~~Y~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~ 312 (938)
T TIGR00395 233 TITYVIAEVGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHA 312 (938)
T ss_pred CCcEEEEEeCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCC
Confidence 11 0
Q ss_pred ccC--------------------------------CCC-------------------------------------Ccccc
Q psy7266 427 YED--------------------------------ARG-------------------------------------DQCDG 437 (1175)
Q Consensus 427 ~~d--------------------------------~~G-------------------------------------~~c~~ 437 (1175)
..| .+| .+.+.
T Consensus 313 p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~ 392 (938)
T TIGR00395 313 PDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYN 392 (938)
T ss_pred HHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccC
Confidence 000 001 11112
Q ss_pred cCCcc----------------------ccccc-cCCcccCCCCccEEe-ecccccccch--hHHHHHHHHHHhcCCCCCc
Q psy7266 438 CGQLI----------------------NAIEL-IQPRCKQCSQAPTVK-SSTQLFLELP--KIEDKLQSWVSETSDQWSS 491 (1175)
Q Consensus 438 ~g~~~----------------------~~~el-~~~~c~r~~~~~~~~-~~~qwfl~l~--~~~~~l~~~~~~~~~~~~~ 491 (1175)
||.+. .-.++ ..++|+|||++++++ .++||||+++ +|++.++++++++. .+|+
T Consensus 393 ~~~~~G~~v~ear~~i~~~L~~~g~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~-~~P~ 471 (938)
T TIGR00395 393 IPPYKGMKVSEAKEKVKADLIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMR-IIPE 471 (938)
T ss_pred CcccCCcCHHHhHHHHHHHHHHCCCceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCE-EeCH
Confidence 22221 01133 468899999999998 9999999999 59999999998863 4688
Q ss_pred hHHHHHHHHhhcCCCcEeeeccCCCCcccCCCC---C----CC-------------------------ce--EEecCc--
Q psy7266 492 NARVICKAWLKDGLKPRCITRDLKWGIPVPLPG---F----EN-------------------------KY--SLSSSP-- 535 (1175)
Q Consensus 492 ~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~---~----e~-------------------------~v--vWfds~-- 535 (1175)
+.++.+.+|| ++|+|||||||++||||||++. + +. +| +||+..
T Consensus 472 ~~~~~~~~~l-~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~ 550 (938)
T TIGR00395 472 EVKNAFEGKI-DWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGD 550 (938)
T ss_pred HHHHHHHHHH-hhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhccCCChHHCCcccCceEEECCCC
Confidence 8999999999 5899999999999999999621 1 11 12 344321
Q ss_pred ----------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCC-cccCeEEEeeceeecCCCcc
Q psy7266 536 ----------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ-YTKVNHIMATEYLNYEDGKF 598 (1175)
Q Consensus 536 ----------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~-~~~p~~i~~~g~l~~~G~KM 598 (1175)
+|++|||.| +|++|+||++||+++|. +++.+..+ ..+|++|++||||+.+|+||
T Consensus 551 ~~~t~~~~~~~~~~~~ef~~~yP~D--------~~~~GkDii~~H~~~~i-~~~~a~~~~~~~Pk~i~~~G~vl~~G~KM 621 (938)
T TIGR00395 551 VKNTNIPLPAIQKLRREFEYWYPLD--------WRISGKDLIPNHLTFYI-FHHVAIFPEKFWPRGIVVNGYVMLEGKKM 621 (938)
T ss_pred hhhcCCCHHHHHHHHHHHhhcCCce--------EEEEeeccccchHHHHH-HHHHHcCCccccCcEEEEeceEEeCCccc
Confidence 467899998 99999999999999994 44444333 34689999999999999999
Q ss_pred cccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy7266 599 SKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISP 678 (1175)
Q Consensus 599 SKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~ 678 (1175)
|||+||+|+|.++++. ||+|++||||++.++.++|++|+++.+.+..|. +++++|++.++..+. +...+ ...
T Consensus 622 SKSlGNvI~p~d~i~~-yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~--l~~l~n~~~~~~~~~----~~~~~-~~~ 693 (938)
T TIGR00395 622 SKSKGNVLTLEQAVEK-FGADVARLYIADAAETVQDADWKESEVEGTILR--LERLYEFAEEITKES----NLETG-EET 693 (938)
T ss_pred cCcCCCCCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH--HHHHHHHHHHHHhhc----ccCCC-ccC
Confidence 9999999999999996 999999999999889999999999999877554 678888888765432 11111 124
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHH
Q psy7266 679 IHEDFLLLALINRELSAYYSVLDKAKLRDGI-RYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLS 757 (1175)
Q Consensus 679 ~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~-~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~ 757 (1175)
+..|+||+++++.+++.+.++|++|+|+.|+ ..+++|...+|+|++..++ +.. .++.++++.++
T Consensus 694 ~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~~------------~~~---~~l~~~l~~~~ 758 (938)
T TIGR00395 694 SFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRRRGGV------------NHK---DVLARYLETWI 758 (938)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCcc------------hHH---HHHHHHHHHHH
Confidence 5689999999999999999999999999999 6789999999999885332 111 24679999999
Q ss_pred HHccchhhHHHHHHHHHcCCC
Q psy7266 758 LLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 758 ~lL~PfmP~~se~i~~~L~~~ 778 (1175)
+||+|||||+||+||++||.+
T Consensus 759 ~LLaP~~P~~aEeiw~~Lg~~ 779 (938)
T TIGR00395 759 KLLAPFAPHFAEEMWEEVGNE 779 (938)
T ss_pred HHhcCcccHHHHHHHHHcCCC
Confidence 999999999999999999854
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >KOG0432|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=707.84 Aligned_cols=513 Identities=19% Similarity=0.239 Sum_probs=420.4
Q ss_pred ccccccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHH
Q psy7266 238 DDLSSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCR 316 (1175)
Q Consensus 238 ~~~~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r 316 (1175)
+....++..|+|..+|.. |.+|+..++|++... | .....|.|+.||||++|.||||||.+.+| .|+++||+|
T Consensus 37 ~~~~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~-----~-~~~~~f~i~~PPPNVTG~LHiGHALt~ai-qD~i~R~~r 109 (995)
T KOG0432|consen 37 DLSGPLPAAYSPAYVESAWYKWWEKQGFFKPEYG-----P-NPGGVFVIPLPPPNVTGSLHIGHALTVAI-QDALARYNR 109 (995)
T ss_pred ccCCcccccCCccchHHHHHHHHHHcCCCCcccC-----C-CCCCcceeecCCCCcccccchhHHHHHHH-HHHHHHHHH
Confidence 445667889999999999 999999999976542 2 24678999999999999999999999999 999999999
Q ss_pred HcCCCcccccccCCcchHHHHHHH-----HcCCCchh------------hHHHHHHHHHHHHhhccccccccC--CCCCH
Q psy7266 317 LVNRNTLYVSGTDEYGTATETKAL-----EEGLTPRQ------------ICDKYFAIHREVYEWFEIDFDYFG--RTSTP 377 (1175)
Q Consensus 317 ~~G~~v~~~~G~D~~G~~ie~~a~-----~~g~~p~~------------~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~ 377 (1175)
|+||.|+|++|+||.|++|+..++ +.|.+..+ +.++|...|.+++++||.++||.+ +|+|+
T Consensus 110 m~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~ 189 (995)
T KOG0432|consen 110 MHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDP 189 (995)
T ss_pred hcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCH
Confidence 999999999999999999998765 33455443 445677889999999999999976 79999
Q ss_pred HHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec--------------------------------ccC---
Q psy7266 378 QQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE--------------------------------GVC--- 422 (1175)
Q Consensus 378 ~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~--------------------------------g~c--- 422 (1175)
...+.|.+.|.+|+++|+||++.+.||||+..++.+||.+|+ |.|
T Consensus 190 ~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i 269 (995)
T KOG0432|consen 190 KLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEI 269 (995)
T ss_pred HHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeE
Confidence 999999999999999999999999999999999999998775 000
Q ss_pred -----------------------------------CCcc-----------------------------------------
Q psy7266 423 -----------------------------------PKCR----------------------------------------- 426 (1175)
Q Consensus 423 -----------------------------------P~c~----------------------------------------- 426 (1175)
|.++
T Consensus 270 ~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~ 349 (995)
T KOG0432|consen 270 VVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEF 349 (995)
T ss_pred EEecCCccccccceeEEeCCCCcccccccCceeecCCCCCccceeecccccccccccceEecCCCChhHHHHHHhcCCCc
Confidence 1111
Q ss_pred --ccCCCCCcccccCCcc------------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHH
Q psy7266 427 --YEDARGDQCDGCGQLI------------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQS 480 (1175)
Q Consensus 427 --~~d~~G~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~ 480 (1175)
..+.+|.+.+.||.+. ..+++..|+|.|+|..+|++..+|||+++.++..+..+
T Consensus 350 ~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~ 429 (995)
T KOG0432|consen 350 INIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALK 429 (995)
T ss_pred eeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHH
Confidence 0146777777888431 24567899999999999999999999999999999999
Q ss_pred HHHhcCCC-CCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCC-----------------------------------
Q psy7266 481 WVSETSDQ-WSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPG----------------------------------- 524 (1175)
Q Consensus 481 ~~~~~~~~-~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~----------------------------------- 524 (1175)
.++++... .|+..+..+.+|+ ++++|||||||+||||.||.|.
T Consensus 430 av~sG~L~i~P~~~~k~w~~W~-~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~ 508 (995)
T KOG0432|consen 430 AVESGKLEILPEFHEKEWYRWL-ENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKE 508 (995)
T ss_pred HHhcCCeEECchHHHHHHHHHH-hhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCccc
Confidence 99976543 5677889999999 7999999999999999999852
Q ss_pred ----CCCce--EEecCc--------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC-CcccCe
Q psy7266 525 ----FENKY--SLSSSP--------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD-QYTKVN 583 (1175)
Q Consensus 525 ----~e~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~-~~~~p~ 583 (1175)
.+.|| |||+|+ ++..|||.+ +.-.|.||++||..-. ++++..+ +..||+
T Consensus 509 ~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~s--------llETG~DILfFWVaRM--vmLg~kLtG~lPF~ 578 (995)
T KOG0432|consen 509 FTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLS--------LLETGHDILFFWVARM--VMLGLKLTGELPFK 578 (995)
T ss_pred ceeecCccHHHhhhhcccccchhcCCccccccHHhcCCch--------hhhcCchHHHHHHHHH--HHhhhhhcCCCCch
Confidence 14578 999997 355677765 4557999999976543 2223222 466789
Q ss_pred EEEeecee-ecCCCcccccCCCccCchhhhh------------------------------c------CCCchhHHHHHH
Q psy7266 584 HIMATEYL-NYEDGKFSKSRGTGVFGNNAKD------------------------------T------GLPADIFRFYLL 626 (1175)
Q Consensus 584 ~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~------------------------------~------~~gaDalR~~ll 626 (1175)
.|+.||+| +.+|+|||||+||||+|.|+|+ . .+|.|||||.||
T Consensus 579 ~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~ 658 (995)
T KOG0432|consen 579 EVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALC 658 (995)
T ss_pred heeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHH
Confidence 99999999 7999999999999999999987 1 259999999999
Q ss_pred hcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----CC-C-hhhHHHHHHHHHHHHHHHHHH
Q psy7266 627 YVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEI----SP-I-HEDFLLLALINRELSAYYSVL 700 (1175)
Q Consensus 627 ~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~----~~-~-~~d~~l~~~l~~~~~~~~~~~ 700 (1175)
+....++|+++|..++.. ++.|+|++||....++..+.+ +.+|.. .. + ..|.||+++|+..++.+.+.|
T Consensus 659 s~~~~~~dInLDv~rv~g--~r~FcNKlWNa~rF~l~~lg~---~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~ 733 (995)
T KOG0432|consen 659 SYTTQGRDINLDVLRVEG--YRHFCNKLWNATRFALQRLGE---NFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESL 733 (995)
T ss_pred HccccCccccccHHHHhh--HHHHHHHHHHHHHHHHHhccc---CCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999874 467888888855444433222 234432 11 1 289999999999999999999
Q ss_pred HhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 701 DKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 701 e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
+.|+|+.|...+++| .++|+.|++..||-. .++. ..+......++..++...++||+|||||+||+||++|..
T Consensus 734 ~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l--~~~~--~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~ 808 (995)
T KOG0432|consen 734 EARNFHLATSALYAFWLYDLCDVYLEATKPLL--WGDS--EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPR 808 (995)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHh--cCCc--HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhccc
Confidence 999999999999999 599999999999943 2222 223344455668889999999999999999999999854
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-75 Score=730.10 Aligned_cols=460 Identities=18% Similarity=0.298 Sum_probs=380.9
Q ss_pred CChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccc
Q psy7266 247 VTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYV 325 (1175)
Q Consensus 247 ~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~ 325 (1175)
|++.++|++ +++|++.++|+... ..++++|||+++||||||.|||||+++.++ +|+++||+||+||+|+|+
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~-------~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~-~Dvi~Ry~rm~G~~V~~~ 72 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTD-------DSNKPKYYILDMFPYPSGALHMGHVRNYTI-TDVLSRYYRMKGYNVLHP 72 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCC-------CCCCCCEEEEcCCCCCCCccccchhHHHHH-HHHHHHHHHhcCCceecc
Confidence 789999999 99999999997643 235778999999999999999999999887 999999999999999999
Q ss_pred cccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEE
Q psy7266 326 SGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQ 403 (1175)
Q Consensus 326 ~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~ 403 (1175)
+|||+||+|||.+|.+.|++|.++++++.+.+++++++||+++|| +++|++|.|.+.+|++|.+|+++|+||++.+++
T Consensus 73 ~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v 152 (842)
T TIGR00396 73 MGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADV 152 (842)
T ss_pred CCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccce
Confidence 999999999999999999999999999999999999999999998 458999999999999999999999999999999
Q ss_pred eeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHH
Q psy7266 404 LHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVS 483 (1175)
Q Consensus 404 ~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~ 483 (1175)
+|||.|+|+|++.+|+ .+++|+|||.+++.+..+||||++++|+++|.++++
T Consensus 153 ~wcp~~~t~La~~ev~----------------------------~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~ 204 (842)
T TIGR00396 153 NWCPNDGTVLANEQVD----------------------------SDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLE 204 (842)
T ss_pred EEeCCCCCCccHHHHh----------------------------hcCccccCCCcceEeecceeEEehhhhHHHHHHHHh
Confidence 9999999999999983 124689999999999999999999999998887655
Q ss_pred hcCCCCCchHHHH-------------------------------------------------------------------
Q psy7266 484 ETSDQWSSNARVI------------------------------------------------------------------- 496 (1175)
Q Consensus 484 ~~~~~~~~~~~~~------------------------------------------------------------------- 496 (1175)
... .||.+++.+
T Consensus 205 ~~~-~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~ 283 (842)
T TIGR00396 205 ELD-HWPESVKEMQRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKIL 283 (842)
T ss_pred hhc-cccHHHHHHHHhcccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHh
Confidence 442 132211100
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 497 -------------------------------------------------------------------------------- 496 (1175)
Q Consensus 497 -------------------------------------------------------------------------------- 496 (1175)
T Consensus 284 ~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~ 363 (842)
T TIGR00396 284 QKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKN 363 (842)
T ss_pred ccCchhhhhhhcccccEecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccc
Confidence
Q ss_pred -----------------------------HHHHhh----------cCCCcEeeeccCCCCcccCCCCCC-----------
Q psy7266 497 -----------------------------CKAWLK----------DGLKPRCITRDLKWGIPVPLPGFE----------- 526 (1175)
Q Consensus 497 -----------------------------~~~wl~----------~~l~dw~ISR~~~WG~piP~~~~e----------- 526 (1175)
+..+|+ -+|+||||||||+||+|||+|+|+
T Consensus 364 ~~~~~~~~~G~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~ 443 (842)
T TIGR00396 364 LKTQAFTEDGVLVNSGEFNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEED 443 (842)
T ss_pred cccccccCCceEecchhcCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCCeEeCcchh
Confidence 011111 157899999999999999997541
Q ss_pred ----------------------------------------Cce--EEecCc-------------------cccccCCCCC
Q psy7266 527 ----------------------------------------NKY--SLSSSP-------------------SLVQFLPTAT 545 (1175)
Q Consensus 527 ----------------------------------------~~v--vWfds~-------------------~~~~~wp~~~ 545 (1175)
.+| |||||+ .+++|+|.|
T Consensus 444 lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD- 522 (842)
T TIGR00396 444 LPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVD- 522 (842)
T ss_pred cchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCc-
Confidence 134 999987 234577887
Q ss_pred CCCcceEEEEeeccccchhHhH---HHHHHHHhCC--CcccCeEEEeeceee-----cCCC-------------------
Q psy7266 546 PQSKITLYQFMAKDNVPFHSIM---FPATLVAAGD--QYTKVNHIMATEYLN-----YEDG------------------- 596 (1175)
Q Consensus 546 ~~~~v~~~~~~GkD~i~fh~~~---~pa~l~~~~~--~~~~p~~i~~~g~l~-----~~G~------------------- 596 (1175)
+++.|.||+..|.+| |...|...+. +..|++.+++||||+ .+|+
T Consensus 523 -------~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 595 (842)
T TIGR00396 523 -------LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGG 595 (842)
T ss_pred -------EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCC
Confidence 899999998776554 6666665442 457789999999996 4888
Q ss_pred --------cccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q psy7266 597 --------KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKN 668 (1175)
Q Consensus 597 --------KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~ 668 (1175)
|||||+||+|+|.++++. ||+|++|||+++.++..+|++|+++.+... ..+++.++|++.++...+..
T Consensus 596 ~~~~~~~~KMSKS~GN~v~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~~~--~~~l~kl~~~~~~~~~~~~~- 671 (842)
T TIGR00396 596 ELVVVGYEKMSKSKGNGIDPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLEGA--RRFLDRVWNLFYNILGELDG- 671 (842)
T ss_pred cccccchhhhhhcCCCcCCHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHHHH--HHHHHHHHHHHHHHHhhhcc-
Confidence 999999999999999996 999999999998888889999999998653 45677888877654333211
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHH
Q psy7266 669 YGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAK-LRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLG 747 (1175)
Q Consensus 669 ~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~-~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~ 747 (1175)
+. .++...++..|+||+++++.+++.+.++|++|+ |+.|++.+|+|.+....|.. + .
T Consensus 672 ~~-~~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~-------------~--------~ 729 (842)
T TIGR00396 672 KT-YLTPTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKAKK-------------D--------A 729 (842)
T ss_pred cc-cCCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh-------------H--------H
Confidence 11 112123567899999999999999999999988 99999999999865443210 0 1
Q ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 748 ILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 748 ~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
++.+++..+++||+|||||+||+||+.|+.
T Consensus 730 ~l~~~l~~ll~lLaPf~PhiaEElW~~l~~ 759 (842)
T TIGR00396 730 LYLEYLKGFLTVLSPFAPHLAEELWEKLGS 759 (842)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhCC
Confidence 357889999999999999999999999974
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-74 Score=722.30 Aligned_cols=456 Identities=19% Similarity=0.340 Sum_probs=376.8
Q ss_pred cCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 243 KSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 243 ~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
+++.|++.++|++ +++|++.++|+... . .+++|||+++||||||.|||||+++.++ +|+++||+||+|++
T Consensus 1 ~~~~y~~~~iE~~w~~~W~~~~~f~~~~-------~-~~~~~~i~~~pPy~nG~lHiGH~~~~~~-~Dii~Ry~rm~G~~ 71 (805)
T PRK00390 1 MMERYNPKEIEKKWQKYWEENKTFKTTE-------D-SSKKYYVLDMFPYPSGGLHMGHVRNYTI-GDVIARYKRMQGYN 71 (805)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCc-------c-CCCCEEEEccCCCCCCCcchhhhHHHHH-HHHHHHHHHhcCCc
Confidence 3568999999999 99999999997643 1 2347999999999999999999999877 99999999999999
Q ss_pred cccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 322 TLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|+|++|||+||+|||.+|++.|++|.++++++.+.|++++++||+++|| +++|++|.|.+.+|++|.+|+++|+||++
T Consensus 72 V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~ 151 (805)
T PRK00390 72 VLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRK 151 (805)
T ss_pred ccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 9999999999999999999999999999999999999999999999998 45899999999999999999999999999
Q ss_pred eEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHH
Q psy7266 400 SVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQ 479 (1175)
Q Consensus 400 ~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~ 479 (1175)
.++++||+.|+|+|++.+|+ +++|++||.+++.+..+||||++++++++|.
T Consensus 152 ~~~v~wcp~~~t~La~~ev~-----------------------------~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~ 202 (805)
T PRK00390 152 ESPVNWCPVDGTVLANEQVI-----------------------------DGRCWRCGAPVEKKELRQWFLKITDYADELL 202 (805)
T ss_pred cCEEEecCCcCCCCCHHHhh-----------------------------CCeecccCCeeEEEecceeeEecchhHHHHH
Confidence 99999999999999999985 3458999999999999999999999998888
Q ss_pred HHHHhcCCCCCchHHH----------------------------------------------------------------
Q psy7266 480 SWVSETSDQWSSNARV---------------------------------------------------------------- 495 (1175)
Q Consensus 480 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 495 (1175)
++++... .||+.++.
T Consensus 203 ~~l~~~~-~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~ 281 (805)
T PRK00390 203 DDLDKLE-DWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFI 281 (805)
T ss_pred HHHHhhc-cCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHH
Confidence 7754421 11111110
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 496 -------------------------------------------------------------------------------- 495 (1175)
Q Consensus 496 -------------------------------------------------------------------------------- 495 (1175)
T Consensus 282 ~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~ 361 (805)
T PRK00390 282 EECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEP 361 (805)
T ss_pred HHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCC
Confidence
Q ss_pred ----------------------------------HHHHHhh----------cCCCcEeeeccCCCCcccCCCCC------
Q psy7266 496 ----------------------------------ICKAWLK----------DGLKPRCITRDLKWGIPVPLPGF------ 525 (1175)
Q Consensus 496 ----------------------------------~~~~wl~----------~~l~dw~ISR~~~WG~piP~~~~------ 525 (1175)
.+...|+ -+++||||||||+||+|||+|+|
T Consensus 362 ~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g~~ 441 (805)
T PRK00390 362 GDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIV 441 (805)
T ss_pred CCcccccccccccCCeEEEeccccCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCCce
Confidence 0111111 13689999999999999997754
Q ss_pred --------------------------------------------CCce--EEecCc-------------------ccccc
Q psy7266 526 --------------------------------------------ENKY--SLSSSP-------------------SLVQF 540 (1175)
Q Consensus 526 --------------------------------------------e~~v--vWfds~-------------------~~~~~ 540 (1175)
+.+| |||||+ .+++|
T Consensus 442 ~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~ 521 (805)
T PRK00390 442 PVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYW 521 (805)
T ss_pred eCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCc
Confidence 1245 999998 13467
Q ss_pred CCCCCCCCcceEEEEeeccccchhHh---HHHHHHHHhCC--CcccCeEEEeeceeecCCCcccccCCCccCchhhhhcC
Q psy7266 541 LPTATPQSKITLYQFMAKDNVPFHSI---MFPATLVAAGD--QYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTG 615 (1175)
Q Consensus 541 wp~~~~~~~v~~~~~~GkD~i~fh~~---~~pa~l~~~~~--~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~ 615 (1175)
||.| +++.|.||+..|.. +|+..|...+. +..|++.+++|||| |||||+||+|+|.++++.
T Consensus 522 ~P~D--------ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v-----KMSKS~GN~i~p~~~i~~- 587 (805)
T PRK00390 522 LPVD--------QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV-----KMSKSKGNVVDPDDIIEK- 587 (805)
T ss_pred CCCc--------EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE-----EeCCCCCCCCCHHHHHHH-
Confidence 8887 89999998866543 45666665542 45677999999999 999999999999999996
Q ss_pred CCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHH
Q psy7266 616 LPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSA 695 (1175)
Q Consensus 616 ~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~ 695 (1175)
||+|++|||+++.++.++|++|+++.+... ..++++++|++.. ....... . .......|+|++++++.+++.
T Consensus 588 ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~--~~~l~kl~~~~~~----~~~~~~~-~-~~~~~~~D~~il~~l~~~i~~ 659 (805)
T PRK00390 588 YGADTARLFEMFAGPPEKDLEWSDSGVEGA--YRFLQRVWRLVVD----AKGEAGA-L-DVAALSEDKELRRKLHKTIKK 659 (805)
T ss_pred cChHHHHHHHHhcCCccCCcccCHHHHHHH--HHHHHHHHHHHHH----hhhcccc-c-CcccChhhHHHHHHHHHHHHH
Confidence 999999999999889999999999988753 3456666665544 1111111 1 122346899999999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 696 YYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 696 ~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
+.++|++|+|+.|++.|++|.+..+.|++ .....++..+++.+++||+|||||+||+||+.|
T Consensus 660 v~~~~e~~~f~~ai~~l~~f~n~lsk~~~------------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L 721 (805)
T PRK00390 660 VTEDIERLRFNTAIAALMELVNALYKAED------------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKL 721 (805)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHc
Confidence 99999999999999999999887777761 012234578999999999999999999999999
Q ss_pred CC
Q psy7266 776 GA 777 (1175)
Q Consensus 776 ~~ 777 (1175)
+.
T Consensus 722 ~~ 723 (805)
T PRK00390 722 GH 723 (805)
T ss_pred CC
Confidence 74
|
|
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-74 Score=723.36 Aligned_cols=461 Identities=19% Similarity=0.331 Sum_probs=373.3
Q ss_pred ccccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCC-CCCchhhhhhHHhHHHHHHHHH
Q psy7266 240 LSSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNV-PHLGNIIGCVLSADVFSRFCRL 317 (1175)
Q Consensus 240 ~~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~-lHiGH~~~~~l~~D~~aR~~r~ 317 (1175)
...+++.|++.+||.+ |++|++.++|+.... ...++++|+|+++||||||. |||||++++++ +|+++||+||
T Consensus 73 ~~~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~-----~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~-~DviaRy~Rm 146 (963)
T PLN02563 73 TPAAKRAYPFHEIEPKWQRYWEENRTFRTPDD-----VDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTA-TDILARYKRM 146 (963)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCcccccc-----ccCCCCCEEEEeCCCCCCCcccchhhHHHHHH-HHHHHHHHHh
Confidence 3467789999999999 999999999975321 12356789999999999996 99999999887 9999999999
Q ss_pred cCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCC
Q psy7266 318 VNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGF 395 (1175)
Q Consensus 318 ~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~ 395 (1175)
+||+|+|++|||+||+|||.+|.+.|++|.++++++++.|++++++||+++|| +++|++|.|.+.+|++|.+|+++|+
T Consensus 147 ~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~Gl 226 (963)
T PLN02563 147 QGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGL 226 (963)
T ss_pred cCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999998 4579999999999999999999999
Q ss_pred EEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHH
Q psy7266 396 TSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIE 475 (1175)
Q Consensus 396 iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~ 475 (1175)
||++.++++|||.|+|+|++.+|+ +++|+|||.+++.+...||||+++.|+
T Consensus 227 iY~~~~~v~wcp~~~T~La~~Ev~-----------------------------~~~~~~~~~~~~~~~~~q~f~~it~ya 277 (963)
T PLN02563 227 AYQAEVPVNWCPALGTVLANEEVV-----------------------------DGLSERGGHPVIRKPMRQWMLKITAYA 277 (963)
T ss_pred EEeeeeeeeecCCcCCCCCHHHhh-----------------------------cCCCcCCCCceEEEecceeEEecchhH
Confidence 999999999999999999998874 567999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHH-----------------------------------------------------------
Q psy7266 476 DKLQSWVSETSDQWSSNARVI----------------------------------------------------------- 496 (1175)
Q Consensus 476 ~~l~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 496 (1175)
++|+++++... ||++++.+
T Consensus 278 ~~L~~~l~~~~--wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~ 355 (963)
T PLN02563 278 DRLLEDLDDLD--WPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTT 355 (963)
T ss_pred HHHHHhhhhcC--CCHHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhc
Confidence 99998864221 11111100
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 497 -------------------------------------------------------------------------------- 496 (1175)
Q Consensus 497 -------------------------------------------------------------------------------- 496 (1175)
T Consensus 356 ~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k 435 (963)
T PLN02563 356 AEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQK 435 (963)
T ss_pred ccchHHHHHHHHHHhchhHHhhhhccceecccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------HHHHhhc----------CCCcEeeeccCCC
Q psy7266 497 --------------------------------------------------CKAWLKD----------GLKPRCITRDLKW 516 (1175)
Q Consensus 497 --------------------------------------------------~~~wl~~----------~l~dw~ISR~~~W 516 (1175)
+..||.+ +|+||||||||+|
T Consensus 436 ~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyW 515 (963)
T PLN02563 436 FDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYW 515 (963)
T ss_pred cCCCceeeeccCccccccccccccCceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeeccc
Confidence 0001100 1789999999999
Q ss_pred CcccCCCCCC------------------------------------------------------Cce--EEecCc----c
Q psy7266 517 GIPVPLPGFE------------------------------------------------------NKY--SLSSSP----S 536 (1175)
Q Consensus 517 G~piP~~~~e------------------------------------------------------~~v--vWfds~----~ 536 (1175)
|+|||+++|+ .+| |||+|+ .
T Consensus 516 G~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r 595 (963)
T PLN02563 516 GEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLR 595 (963)
T ss_pred CCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHH
Confidence 9999997541 134 888887 0
Q ss_pred ---------------ccccCCCCCCCCcceEEEEeeccccchhHh---HHHHHHHHhCC--CcccCeEEEeeceee----
Q psy7266 537 ---------------LVQFLPTATPQSKITLYQFMAKDNVPFHSI---MFPATLVAAGD--QYTKVNHIMATEYLN---- 592 (1175)
Q Consensus 537 ---------------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~---~~pa~l~~~~~--~~~~p~~i~~~g~l~---- 592 (1175)
..+|+|.| +++.|.||.-.|.+ +|...++..|. ...|++.+++||||+
T Consensus 596 ~~~p~~~~~~~~~~~~~~w~PvD--------~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~ 667 (963)
T PLN02563 596 FMDPKNSNALVDKEKEKYWMPVD--------LYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVE 667 (963)
T ss_pred HhCCCccccccCHHHHhCcCCCc--------EeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeecCcc
Confidence 12577887 89999999766633 45555554442 357889999999996
Q ss_pred ------cCCC---------------------------------------------cccccCCCccCchhhhhcCCCchhH
Q psy7266 593 ------YEDG---------------------------------------------KFSKSRGTGVFGNNAKDTGLPADIF 621 (1175)
Q Consensus 593 ------~~G~---------------------------------------------KMSKS~GN~v~~~d~i~~~~gaDal 621 (1175)
.+|+ |||||+||||+|.++|+. ||||++
T Consensus 668 ~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~k-YGADaL 746 (963)
T PLN02563 668 YTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSE-YGADSL 746 (963)
T ss_pred ccceecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHH-cCcHHH
Confidence 4566 999999999999999996 999999
Q ss_pred HHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh--cCCCCCC---CCCChhhHHHHHHHHHHHHHH
Q psy7266 622 RFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKN--YGSTIPE---ISPIHEDFLLLALINRELSAY 696 (1175)
Q Consensus 622 R~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~--~~~~~p~---~~~~~~d~~l~~~l~~~~~~~ 696 (1175)
|||+++.++..+|..|+.+.+.. ..+|++|+.+++..+ .++.... ......|.|++++++.+++.+
T Consensus 747 Rl~ll~~ap~~dd~~w~~~~V~g---------~~rfL~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkV 817 (963)
T PLN02563 747 RLYEMFMGPLRDSKTWSTSGVEG---------VHRFLGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKV 817 (963)
T ss_pred HHHHHhCCCcccccccCHHHHHH---------HHHHHHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999887653 344444444444332 0111110 011246899999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcC
Q psy7266 697 YSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLG 776 (1175)
Q Consensus 697 ~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~ 776 (1175)
.++|++|+|+.|++.||+|.+..+. |. . ...+++..+++||+|||||+||+||++|+
T Consensus 818 te~~e~y~FntAi~~lmef~n~l~~-------~~-------~---------~~~~~l~~ll~LLaPf~PhiaEELW~~Lg 874 (963)
T PLN02563 818 TEEIESTRFNTAISAMMEFTNAAYK-------WD-------K---------VPREAIEPFVLLLSPYAPHLAEELWFRLG 874 (963)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhC-------ch-------H---------HHHHHHHHHHHHHHhhhhhHHHHHHHHcC
Confidence 9999999999999999999765431 20 0 12578888999999999999999999998
Q ss_pred CC
Q psy7266 777 AS 778 (1175)
Q Consensus 777 ~~ 778 (1175)
.+
T Consensus 875 ~~ 876 (963)
T PLN02563 875 HS 876 (963)
T ss_pred CC
Confidence 53
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-73 Score=728.65 Aligned_cols=501 Identities=16% Similarity=0.170 Sum_probs=377.5
Q ss_pred cccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcC
Q psy7266 241 SSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVN 319 (1175)
Q Consensus 241 ~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G 319 (1175)
.+++.++++.++|.+ |++|++.++|+...... ...++++|+|+.||||+||.|||||+++.++ +|+++||+||+|
T Consensus 7 ~~~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~---~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~-~D~i~Rykrm~G 82 (1084)
T PLN02959 7 KSTARRDRLLEIEVAVQKWWEEEKVFEAEAGDE---PPKPGEKFFGNFPYPYMNGLLHLGHAFSLSK-LEFAAAYHRLRG 82 (1084)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCcccCcccc---cCCCCCcEEEeCCCCCCCCCcchhhHHHHHH-HHHHHHHHHcCC
Confidence 456678999999999 99999999998754210 1123478999999999999999999999998 999999999999
Q ss_pred CCcccccccCCcchHHHHHHHH-------cCCCc----------------------------------------------
Q psy7266 320 RNTLYVSGTDEYGTATETKALE-------EGLTP---------------------------------------------- 346 (1175)
Q Consensus 320 ~~v~~~~G~D~~G~~ie~~a~~-------~g~~p---------------------------------------------- 346 (1175)
|+|+|++||||||+||+..|++ .|+.+
T Consensus 83 ~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~ 162 (1084)
T PLN02959 83 ANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKY 162 (1084)
T ss_pred CccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchH
Confidence 9999999999999999999754 24321
Q ss_pred ---------------------hhhHHHHHHHHHHHHhhccccccccC--CCCC--HHHHHHHHHHHHHHHHcCCEEeceE
Q psy7266 347 ---------------------RQICDKYFAIHREVYEWFEIDFDYFG--RTST--PQQTEIVQHLFDRVHKAGFTSSASV 401 (1175)
Q Consensus 347 ---------------------~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~ 401 (1175)
..+++.|...+++++++||++.||.+ .|+| |.|..+|+|+|.+|+++|+||++.+
T Consensus 163 ~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~r 242 (1084)
T PLN02959 163 QWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKR 242 (1084)
T ss_pred HHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCe
Confidence 11333344667899999999999976 5888 9999999999999999999999999
Q ss_pred EEeeeCCCCcccccceec-----------------------------cc-------------------C---CC------
Q psy7266 402 EQLHCAQCDRFLADRFVE-----------------------------GV-------------------C---PK------ 424 (1175)
Q Consensus 402 ~~~~c~~~~~~l~d~~V~-----------------------------g~-------------------c---P~------ 424 (1175)
+++|||.|+|+|+|++++ +. | |.
T Consensus 243 pv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~ 322 (1084)
T PLN02959 243 YTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAY 322 (1084)
T ss_pred eeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEE
Confidence 999999999999996321 10 0 10
Q ss_pred -------------------c-------------------------------ccc--------------------------
Q psy7266 425 -------------------C-------------------------------RYE-------------------------- 428 (1175)
Q Consensus 425 -------------------c-------------------------------~~~-------------------------- 428 (1175)
| +++
T Consensus 323 ~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~ 402 (1084)
T PLN02959 323 EINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDS 402 (1084)
T ss_pred EecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCC
Confidence 0 000
Q ss_pred --C---------------CCCC--------------cccc----------------------------------------
Q psy7266 429 --D---------------ARGD--------------QCDG---------------------------------------- 437 (1175)
Q Consensus 429 --d---------------~~G~--------------~c~~---------------------------------------- 437 (1175)
| .+|. ..+.
T Consensus 403 pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~ 482 (1084)
T PLN02959 403 PDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGT 482 (1084)
T ss_pred HHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhcccccc
Confidence 0 0111 0111
Q ss_pred --cCCcc-----c-----------------cccccCCcccCCCCccEEeecccccccch--hHHHHHHHHHHhcCCCCCc
Q psy7266 438 --CGQLI-----N-----------------AIELIQPRCKQCSQAPTVKSSTQLFLELP--KIEDKLQSWVSETSDQWSS 491 (1175)
Q Consensus 438 --~g~~~-----~-----------------~~el~~~~c~r~~~~~~~~~~~qwfl~l~--~~~~~l~~~~~~~~~~~~~ 491 (1175)
+|.+. + -.+-..|+|+|||++++++.++|||++++ .+++.+++.+++++ .+|+
T Consensus 483 m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~-~~P~ 561 (1084)
T PLN02959 483 MLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMN-LYSD 561 (1084)
T ss_pred ccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcCCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccE-EECH
Confidence 11110 0 01223579999999999999999999998 79999999998763 3577
Q ss_pred hHHHHHHHHhhcCCCcEeeeccCCCCcccCCCC----------------C------------------------CCce--
Q psy7266 492 NARVICKAWLKDGLKPRCITRDLKWGIPVPLPG----------------F------------------------ENKY-- 529 (1175)
Q Consensus 492 ~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~----------------~------------------------e~~v-- 529 (1175)
.+++.+.+|| ++++||||||||+||||||++. + ..+|
T Consensus 562 ~~~~~~~~wl-~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D 640 (1084)
T PLN02959 562 ETRHGFEHTL-GWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWD 640 (1084)
T ss_pred HHHHHHHHHH-hCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhhhccCCccccCChhhcCcccee
Confidence 8999999999 7999999999999999999410 0 1346
Q ss_pred EEecCc------------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee
Q psy7266 530 SLSSSP------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL 591 (1175)
Q Consensus 530 vWfds~------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l 591 (1175)
+||+|+ +|++|||.| +++.|+||++||..+...+..+.....++|+.+++||||
T Consensus 641 ~wF~Sg~~p~~t~~p~~~l~~~r~ef~~~yP~D--------l~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V 712 (1084)
T PLN02959 641 FVFCGGPLPKSSDIPAELLEKMKQEFEYWYPFD--------LRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHL 712 (1084)
T ss_pred EeecCCCcccccCCCHHHHhhhhHHHHhhCCCe--------EEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEE
Confidence 999986 245688988 899999999999765432222222234667899999999
Q ss_pred ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7266 592 NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGS 671 (1175)
Q Consensus 592 ~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~ 671 (1175)
+.+|+|||||+||+|+|.++++. ||+|++||||++.++..+|.+|+++.+... ...+.|.+..+..++... ..
T Consensus 713 ~~~G~KMSKSkGNvI~p~diI~k-yGADalRl~la~~~~~~~D~nF~~k~~n~~-----~~~l~n~~~~~~~~~~~~-~~ 785 (1084)
T PLN02959 713 MLNSEKMSKSTGNFLTLRQAIEE-FSADATRFALADAGDGVDDANFVFETANAA-----ILRLTKEIAWMEEVLAAE-SS 785 (1084)
T ss_pred ecCCcCccccCCCcCCHHHHHHH-hCchHHHHHHhhcCCccCCCCccHHHHHHH-----HHHHHHHHHHHHHhhhhh-cc
Confidence 99999999999999999999996 999999999999888889999998865321 222333221111111100 01
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHH
Q psy7266 672 TIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYI-LNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILC 750 (1175)
Q Consensus 672 ~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i-~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~ 750 (1175)
..+...+...|+||+++++.+++.+.++|++|+|+.|++.. |+|...-++|...+ .. .. ....++.
T Consensus 786 ~~~~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~~Yel~~~k~~yr~~~------~~--~~-----~~~~~L~ 852 (1084)
T PLN02959 786 LRTGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSGFYDLQAARDEYRLSC------GS--GG-----MNRDLVW 852 (1084)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhHHHHhhcc------cc--ch-----HHHHHHH
Confidence 11112246789999999999999999999999999999974 43433333442211 10 11 1234568
Q ss_pred HHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 751 QVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 751 ~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
.++..+++||+|||||+||+||+.|
T Consensus 853 ~vl~~~l~LLaP~~PfiaEEiW~~l 877 (1084)
T PLN02959 853 RFMDVQTRLITPICPHYAEHVWREI 877 (1084)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 8999999999999999999999999
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-71 Score=674.56 Aligned_cols=461 Identities=19% Similarity=0.346 Sum_probs=388.5
Q ss_pred CCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCC-CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 244 SKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNE-NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 244 ~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~-~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
+..|++.+||++ |++|++.+.|+...+ .++ ++|||+.+.|||||.||+||.|++++ +|+++||+||+|||
T Consensus 2 ~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d-------~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti-~Dv~aRykRm~GyN 73 (814)
T COG0495 2 MSRYNPREIEEKWQKRWEEAKVFEADED-------SDKPEKFYVLVMFPYPSGALHVGHVRNYTI-GDVIARYKRMQGYN 73 (814)
T ss_pred CcccchHHHHHHHHHHHHhcCCcccCCC-------CCCCCceEEEeCCCCCCCCcccCccccccH-HHHHHHHHHhcCCe
Confidence 467999999999 999999999987542 233 69999999999999999999999998 99999999999999
Q ss_pred cccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 322 TLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|+|++|||.+|+|++..|.+.|.+|..+++++.+.++++++.||.++||.+ .|+||+|.+++||+|.+|+++|+||++
T Consensus 74 VL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~ 153 (814)
T COG0495 74 VLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRK 153 (814)
T ss_pred ecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEec
Confidence 999999999999999999999999999999999999999999999999987 489999999999999999999999999
Q ss_pred eEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHH
Q psy7266 400 SVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQ 479 (1175)
Q Consensus 400 ~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~ 479 (1175)
+.+|+|||.|+|+|+|++|. +..|||||.+++.+...||||+++++.+.|+
T Consensus 154 ~~~VnwcP~d~tvlaneqv~-----------------------------~g~~~r~~~~V~~kel~qw~~kit~yae~ll 204 (814)
T COG0495 154 EAPVNWCPVDGTVLANEQVI-----------------------------DGGCWRCGEPVEIKELTQWFFKITDYADELL 204 (814)
T ss_pred cccceeCCCcCCccccceee-----------------------------cCCcccCCCceeEeeeEEEEEEechhHHHHH
Confidence 99999999999999999985 3458999999999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHhh---------------------------------------------------------
Q psy7266 480 SWVSETSDQWSSNARVICKAWLK--------------------------------------------------------- 502 (1175)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~wl~--------------------------------------------------------- 502 (1175)
+-+......||..++.++++|+.
T Consensus 205 ~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~ 284 (814)
T COG0495 205 DDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLV 284 (814)
T ss_pred hhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhH
Confidence 88887754599998888876621
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 503 -------------------------------------------------------------------------------- 502 (1175)
Q Consensus 503 -------------------------------------------------------------------------------- 502 (1175)
T Consensus 285 a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~ 364 (814)
T COG0495 285 AEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKK 364 (814)
T ss_pred HHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEE
Confidence
Q ss_pred ----------------------------------------------------cCCCcEeeeccCCCCcccCCCCCCC---
Q psy7266 503 ----------------------------------------------------DGLKPRCITRDLKWGIPVPLPGFEN--- 527 (1175)
Q Consensus 503 ----------------------------------------------------~~l~dw~ISR~~~WG~piP~~~~e~--- 527 (1175)
-.++||.+||||+||.|||+-+|+.
T Consensus 365 vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~ 444 (814)
T COG0495 365 VIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGV 444 (814)
T ss_pred EEecCCCcccceeccCceEeccccccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCc
Confidence 0468999999999999999865421
Q ss_pred ----------------------------------------------ce-EEecCc--------------------ccccc
Q psy7266 528 ----------------------------------------------KY-SLSSSP--------------------SLVQF 540 (1175)
Q Consensus 528 ----------------------------------------------~v-vWfds~--------------------~~~~~ 540 (1175)
.+ +|++|+ .+.+|
T Consensus 445 ~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW 524 (814)
T COG0495 445 VPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYW 524 (814)
T ss_pred ccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcc
Confidence 11 455554 45678
Q ss_pred CCCCCCCCcceEEEEeeccccchhHhH---HHHHHHHhCC--CcccCeEEEeeceeec-CCCcccccCCCccCchhhhhc
Q psy7266 541 LPTATPQSKITLYQFMAKDNVPFHSIM---FPATLVAAGD--QYTKVNHIMATEYLNY-EDGKFSKSRGTGVFGNNAKDT 614 (1175)
Q Consensus 541 wp~~~~~~~v~~~~~~GkD~i~fh~~~---~pa~l~~~~~--~~~~p~~i~~~g~l~~-~G~KMSKS~GN~v~~~d~i~~ 614 (1175)
+|.| +++.|+||+..|..| |+..|...|+ ...|++.++++|||+. +|+|||||+||+|+|+++++.
T Consensus 525 ~PVD--------~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~ 596 (814)
T COG0495 525 YPVD--------LYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK 596 (814)
T ss_pred cChh--------eeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHH
Confidence 8888 899999999999885 4556655543 1346677999999998 799999999999999999996
Q ss_pred CCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhHHHHHHHHHH
Q psy7266 615 GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGST--IPEISPIHEDFLLLALINRE 692 (1175)
Q Consensus 615 ~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~--~p~~~~~~~d~~l~~~l~~~ 692 (1175)
||||++|+|+++.+|..+|++|+.+.+. +...|++|+.+++....... .........++|++ +++
T Consensus 597 -yGADt~Rl~~m~~ap~~~d~~W~e~gv~---------g~~rfL~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~---h~~ 663 (814)
T COG0495 597 -YGADTVRLYIMFAAPPEQDLEWSESGVE---------GARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWLL---HRT 663 (814)
T ss_pred -hCchHHHHHHHhhCChhhCCCCChhhhH---------HHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHH---HHH
Confidence 9999999999999999999999999875 45667777777766543321 11111113455655 555
Q ss_pred HHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH
Q psy7266 693 LSAYYSVLDK-AKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTI 771 (1175)
Q Consensus 693 ~~~~~~~~e~-~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i 771 (1175)
++.+.+.++. +.++.++..+|.|.+...+|...... .. .++.+++..+.+||+||+||+||||
T Consensus 664 ~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~~---------~~-------~~l~~~l~~~v~lLaP~aPH~aEEl 727 (814)
T COG0495 664 IKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEG---------DR-------KVLREALETWVRLLAPFAPHIAEEL 727 (814)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------hH-------HHHHHHHHHHHHHhcccccHHHHHH
Confidence 6666777766 89999999999999999999875432 11 3457889999999999999999999
Q ss_pred HHHcCCC
Q psy7266 772 ASQLGAS 778 (1175)
Q Consensus 772 ~~~L~~~ 778 (1175)
|+.||..
T Consensus 728 W~~lg~~ 734 (814)
T COG0495 728 WEELGNE 734 (814)
T ss_pred HHHhcCC
Confidence 9999963
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-71 Score=707.15 Aligned_cols=445 Identities=19% Similarity=0.246 Sum_probs=357.9
Q ss_pred CCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHc---------------CC---------CchhhHH
Q psy7266 296 PHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE---------------GL---------TPRQICD 351 (1175)
Q Consensus 296 lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~---------------g~---------~p~~~~~ 351 (1175)
|||||+++.++ +|+++||+||+||+|+|++|||+||+||+..|++. |+ +|.++++
T Consensus 1 lHiGH~~~~t~-~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~ 79 (897)
T PRK12300 1 LHVGHGRTYTI-GDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVE 79 (897)
T ss_pred CccchhHHHHH-HHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 79999999888 99999999999999999999999999999987532 43 4567788
Q ss_pred HHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc---------
Q psy7266 352 KYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG--------- 420 (1175)
Q Consensus 352 ~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g--------- 420 (1175)
+|...+++++++||+++||.+ .|+||.|.++|+|+|.+|+++|+||++.++++|||.|+|+|+|+++..
T Consensus 80 ~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~ 159 (897)
T PRK12300 80 YFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEY 159 (897)
T ss_pred HhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceE
Confidence 899999999999999999976 599999999999999999999999999999999999999999965520
Q ss_pred -----------------c--------------------------------------------------------------
Q psy7266 421 -----------------V-------------------------------------------------------------- 421 (1175)
Q Consensus 421 -----------------~-------------------------------------------------------------- 421 (1175)
|
T Consensus 160 ~~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~ 239 (897)
T PRK12300 160 TLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKV 239 (897)
T ss_pred EEEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCEE
Confidence 0
Q ss_pred ----------------------------CCCccccC--------------------------------------------
Q psy7266 422 ----------------------------CPKCRYED-------------------------------------------- 429 (1175)
Q Consensus 422 ----------------------------cP~c~~~d-------------------------------------------- 429 (1175)
||+++.+|
T Consensus 240 ~~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~ 319 (897)
T PRK12300 240 KNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKS 319 (897)
T ss_pred ECCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCC
Confidence 01111000
Q ss_pred ------------------CCCCcccccCCcc----------------------ccccc-cCCcccCCCCccEEee-cccc
Q psy7266 430 ------------------ARGDQCDGCGQLI----------------------NAIEL-IQPRCKQCSQAPTVKS-STQL 467 (1175)
Q Consensus 430 ------------------~~G~~c~~~g~~~----------------------~~~el-~~~~c~r~~~~~~~~~-~~qw 467 (1175)
..|.+.+.+|.+. ...++ ..|+|+|||++++++. ++||
T Consensus 320 ~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QW 399 (897)
T PRK12300 320 QEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQW 399 (897)
T ss_pred ccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCce
Confidence 0111112222211 00122 2588999999999986 6999
Q ss_pred cccch--hHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCC---CCC----C-----------
Q psy7266 468 FLELP--KIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLP---GFE----N----------- 527 (1175)
Q Consensus 468 fl~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~---~~e----~----------- 527 (1175)
|++++ ++++.++++++++. .+|+..++++.+|| ++++||||||||+||+|||++ -++ .
T Consensus 400 Fi~~~~~~~k~~~~~~~~~~~-~~P~~~~~~~~~~l-~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~ 477 (897)
T PRK12300 400 FIDYSDPEWKELAHKALDNME-IIPEEYRKEFENTI-DWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAH 477 (897)
T ss_pred EEEcCcHHHHHHHHHHHccCE-EECHHHHHHHHHHH-hhhhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHHHH
Confidence 99998 79999999998764 46778899999999 589999999999999999962 110 0
Q ss_pred --------------ce-------------EEecCc-----------cccccCCCCCCCCcceEEEEeeccccchhHhHHH
Q psy7266 528 --------------KY-------------SLSSSP-----------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFP 569 (1175)
Q Consensus 528 --------------~v-------------vWfds~-----------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~p 569 (1175)
.+ +|++++ +|++|||.| +|++|+||++||..+|
T Consensus 478 ~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D--------~~~~GkDii~~Hl~~~- 548 (897)
T PRK12300 478 KIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVD--------WRHSGKDLIPNHLTFF- 548 (897)
T ss_pred HHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCce--------EEEeeeccCccHHHHH-
Confidence 01 233433 467799998 9999999999999998
Q ss_pred HHHHHhCCC-cccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhH
Q psy7266 570 ATLVAAGDQ-YTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNS 648 (1175)
Q Consensus 570 a~l~~~~~~-~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~ 648 (1175)
.++..+..+ .++|+++++||||+.+|+|||||+||+|+|.++++. ||+|++||||++.++.++|.+|+++.+.
T Consensus 549 ~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~-yGaDalRl~L~~~~~~~~D~~fs~~~v~----- 622 (897)
T PRK12300 549 IFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEE-YGADVVRLYLTSSAELLQDADWREKEVE----- 622 (897)
T ss_pred HHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhCCCCCCCCccCHHHHH-----
Confidence 344433333 367799999999988999999999999999999996 9999999999998899999999999765
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHHHHhcC
Q psy7266 649 ELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYIL-NISRYCNQYMQTQQ 727 (1175)
Q Consensus 649 ~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~-~~~~~~n~yi~~~k 727 (1175)
..+|+++|+..++....+.. +...+...|+|++++++.+++.+.++|++|+|+.|++.++ .+.+.+|+|++.++
T Consensus 623 ----~~~~~l~r~~~~~~~~~~~~-~~~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~k 697 (897)
T PRK12300 623 ----SVRRQLERFYELAKELIEIG-GEEELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRVG 697 (897)
T ss_pred ----HHHHHHHHHHHHHHHHhcCC-CccccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555666555554433222 2223567899999999999999999999999999999885 66788999999766
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCC
Q psy7266 728 PWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 728 pw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~ 778 (1175)
+ .++.++.++++.+++||+|||||+||+||++|+.+
T Consensus 698 ~---------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~ 733 (897)
T PRK12300 698 E---------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE 733 (897)
T ss_pred h---------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 4 23456789999999999999999999999999854
|
|
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-69 Score=626.56 Aligned_cols=312 Identities=21% Similarity=0.276 Sum_probs=282.8
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHc---------CCCch----
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE---------GLTPR---- 347 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~---------g~~p~---- 347 (1175)
++|+|++|||||||.|||||+++.++ +|+++||+||+|++|+|++|||+||+|||..+++. +++|+
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~-~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTI-QDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHH-HHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHH
Confidence 47999999999999999999998776 99999999999999999999999999999998764 44443
Q ss_pred ---hhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccC
Q psy7266 348 ---QICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVC 422 (1175)
Q Consensus 348 ---~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~c 422 (1175)
++++++++.+++++++|||++|| +++|++|.|.+.|+++|.+|+++|+||++.++++||+.|+++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 57899999999999999999994 668999999999999999999999999999999999999999999876
Q ss_pred CCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHHHHh
Q psy7266 423 PKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAWL 501 (1175)
Q Consensus 423 P~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~wl 501 (1175)
|+|||++++++.++||||+|++++++|++++++++.. ||++.++++.+||
T Consensus 156 -----------------------------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l 206 (382)
T cd00817 156 -----------------------------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWL 206 (382)
T ss_pred -----------------------------cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHH
Confidence 7889999999999999999999999999999985434 5778999999999
Q ss_pred hcCCCcEeeeccCCCCcccCCCCCC----------------------------------Cce--EEecCc----------
Q psy7266 502 KDGLKPRCITRDLKWGIPVPLPGFE----------------------------------NKY--SLSSSP---------- 535 (1175)
Q Consensus 502 ~~~l~dw~ISR~~~WG~piP~~~~e----------------------------------~~v--vWfds~---------- 535 (1175)
+ +++||||||+++||+|||+|+|+ ++| |||||+
T Consensus 207 ~-~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~ 285 (382)
T cd00817 207 E-NIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWP 285 (382)
T ss_pred h-hCccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCC
Confidence 5 59999999999999999997653 567 999998
Q ss_pred ----cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchh
Q psy7266 536 ----SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNN 610 (1175)
Q Consensus 536 ----~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d 610 (1175)
+|++|||.| +|++|+||++||..++.++.+++. +..++..+++||+|+ .+|+|||||+||+|+|.|
T Consensus 286 ~~~~~~~~~~p~d--------~~~~G~D~~~~h~~~~l~~~~~~~-g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~d 356 (382)
T cd00817 286 EETKDLKKFYPTS--------LLVTGHDIIFFWVARMIMRGLKLT-GKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLD 356 (382)
T ss_pred CcchhHhhcCCCC--------eeeeecCcCchHHHHHHHHHHHhh-CCCchHHeEeeeeEECCCCCCccccCCCCCCHHH
Confidence 256789998 999999999999999887776653 233459999999997 799999999999999999
Q ss_pred hhhcCCCchhHHHHHHhcCCCCCCccc
Q psy7266 611 AKDTGLPADIFRFYLLYVRPENQDTSF 637 (1175)
Q Consensus 611 ~i~~~~gaDalR~~ll~~~~~~~D~~f 637 (1175)
+++. ||+|++|||+++..+.++|.+|
T Consensus 357 ll~~-~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 357 VIDG-YGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHh-cCcHHHHHHHHhCCCccCCCCC
Confidence 9996 9999999999999999999987
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >KOG0434|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-66 Score=581.14 Aligned_cols=507 Identities=19% Similarity=0.269 Sum_probs=395.6
Q ss_pred CCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCc
Q psy7266 244 SKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNT 322 (1175)
Q Consensus 244 ~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v 322 (1175)
++.+++.+-|++ .++|.+.+.|...-.. ..++++|.+.++||+++|.||.||+...+| .|++.||..|.||.|
T Consensus 5 ~~n~nfp~eEEkvle~W~e~~aF~~slk~-----sk~rp~ftFyDGPPFATGlPHyGHiLa~TI-KDiVtRya~~~G~hV 78 (1070)
T KOG0434|consen 5 PENFNFPKEEEKVLEFWREIDAFHTSLKL-----SKGRPKFTFYDGPPFATGLPHYGHILASTI-KDIVTRYATQTGHHV 78 (1070)
T ss_pred cccCCCchhHHHHHHHHHHhhHHHHHHHh-----hCCCCceeeccCCccccCCCccchhhhhhH-HHHHHHHhhccccce
Confidence 456888888888 9999999999643211 236789999999999999999999999999 999999999999999
Q ss_pred ccccccCCcchHHHHHHH-HcCCC----------------chhhHHHHHHHHHHHHhhcc--ccccccCCCCCHHHHHHH
Q psy7266 323 LYVSGTDEYGTATETKAL-EEGLT----------------PRQICDKYFAIHREVYEWFE--IDFDYFGRTSTPQQTEIV 383 (1175)
Q Consensus 323 ~~~~G~D~~G~~ie~~a~-~~g~~----------------p~~~~~~~~~~~~~~~~~lg--i~~D~~~~T~~~~~~~~v 383 (1175)
-..+|||+||+|+|.... +.|++ +..++-.|...++....+|| |+||..++|++|.+++.|
T Consensus 79 eRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESv 158 (1070)
T KOG0434|consen 79 ERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESV 158 (1070)
T ss_pred eeecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHH
Confidence 999999999999997654 44544 34455678899999999999 788888999999999999
Q ss_pred HHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec------------------c----------c-----------C--
Q psy7266 384 QHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE------------------G----------V-----------C-- 422 (1175)
Q Consensus 384 ~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~------------------g----------~-----------c-- 422 (1175)
+|+|.+|+++|++|++-+..+|+..|.|+||+-+-. | | |
T Consensus 159 WwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vn 238 (1070)
T KOG0434|consen 159 WWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVN 238 (1070)
T ss_pred HHHHHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEc
Confidence 999999999999999999999999999999983211 0 0 0
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 423 -------------------------------------------------------------------------------- 422 (1175)
Q Consensus 423 -------------------------------------------------------------------------------- 422 (1175)
T Consensus 239 p~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~s 318 (1070)
T KOG0434|consen 239 PDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDS 318 (1070)
T ss_pred CCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCC
Confidence
Q ss_pred --------CCcccc---------------------CCCCCccc----ccCCcc--------------------ccccccC
Q psy7266 423 --------PKCRYE---------------------DARGDQCD----GCGQLI--------------------NAIELIQ 449 (1175)
Q Consensus 423 --------P~c~~~---------------------d~~G~~c~----~~g~~~--------------------~~~el~~ 449 (1175)
|+.|.+ |..|.... -.|.++ ..+.|++
T Consensus 319 GTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsY 398 (1070)
T KOG0434|consen 319 GTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSY 398 (1070)
T ss_pred CceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeecc
Confidence 100000 11111100 011111 1235899
Q ss_pred CcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCch-HH-HHHHHHhhcCCCcEeeeccCCCCcccCCCCCC-
Q psy7266 450 PRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSN-AR-VICKAWLKDGLKPRCITRDLKWGIPVPLPGFE- 526 (1175)
Q Consensus 450 ~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e- 526 (1175)
|.|||+++|+++|..++||+++..+.++|++...+. .|.|. .+ .++.||| ++.+||.|||+|+||+|||+|-.+
T Consensus 399 PFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~t--~WVP~~ikeKRF~NWL-~nARDW~iSRnR~WGTPIpLWVSdD 475 (1070)
T KOG0434|consen 399 PFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMKT--HWVPQNIKEKRFANWL-KNARDWNISRNRYWGTPIPLWVSDD 475 (1070)
T ss_pred CceecCCChHHHhhccHhhhhHHHHHHHHHhccccc--ccCChhhhHHHHHHHH-hhhhhcccccccccCCCcceEEccC
Confidence 999999999999999999999999999988766554 48664 54 6899999 689999999999999999998421
Q ss_pred ----------------------------------------------Cce--EEecCc---------------cccccCCC
Q psy7266 527 ----------------------------------------------NKY--SLSSSP---------------SLVQFLPT 543 (1175)
Q Consensus 527 ----------------------------------------------~~v--vWfds~---------------~~~~~wp~ 543 (1175)
..| +||+|+ .|+.-+|+
T Consensus 476 ~eevVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPa 555 (1070)
T KOG0434|consen 476 YEEVVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPA 555 (1070)
T ss_pred CceEEEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCch
Confidence 134 999998 34444555
Q ss_pred CCCCCcceEEEEe--ecccc--chhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCc
Q psy7266 544 ATPQSKITLYQFM--AKDNV--PFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPA 618 (1175)
Q Consensus 544 ~~~~~~v~~~~~~--GkD~i--~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~ga 618 (1175)
+ || |-|+. ||+++...+.++ ++.+++++++++|+|+ .+|+|||||+.|+.+|..++++ |||
T Consensus 556 d----------FIaEGlDQTRGWFYTL~VlsT~L---F~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iink-YGA 621 (1070)
T KOG0434|consen 556 D----------FIAEGLDQTRGWFYTLLVLSTAL---FGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINK-YGA 621 (1070)
T ss_pred H----------hhhhccccccchhhHHHHHHHHH---cCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHh-hcc
Confidence 4 54 77877 687776444333 3578889999999997 6789999999999999999996 999
Q ss_pred hhHHHHHHhcC-CCCCCccccHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHhcCCCCCC---CCCChhhHHHHHHHH
Q psy7266 619 DIFRFYLLYVR-PENQDTSFSWQDLATKNNSELLNNLGN----FINRALSFIEKNYGSTIPE---ISPIHEDFLLLALIN 690 (1175)
Q Consensus 619 DalR~~ll~~~-~~~~D~~f~~~~~~~~~n~~l~~~l~n----~~~r~~~~~~~~~~~~~p~---~~~~~~d~~l~~~l~ 690 (1175)
|+||+||+.+- .....+.|.++.+.+.+...|+ -++| ++.++..+-..-....++. ...+.+|+||++..+
T Consensus 622 DalRlYLInSPVvraE~LkFkeeGVrevvk~v~l-PW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~q 700 (1070)
T KOG0434|consen 622 DALRLYLINSPVVRAENLKFKEEGVREVVKDVLL-PWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQ 700 (1070)
T ss_pred hheeeeeecCccccccccccchhhHHHHHHhhhh-hhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHH
Confidence 99999999853 3567899999999876655443 3334 3333322211100001111 134569999999999
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHH
Q psy7266 691 RELSAYYSVLDKAKLRDGIRYILNIS-RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTAS 769 (1175)
Q Consensus 691 ~~~~~~~~~~e~~~~~~a~~~i~~~~-~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se 769 (1175)
.++.-+.+.|+.|++..++-.+..|+ .+.|||++.++.+. ++++. ...+...|.++.++|..+.++|+||.||+||
T Consensus 701 slv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRrrl--kGe~G-~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE 777 (1070)
T KOG0434|consen 701 SLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRRRL--KGENG-EHDCHNALNVLFEVLFTLVRVMAPFTPFFTE 777 (1070)
T ss_pred HHHHHHHHHHHheehhhhHHHHHHHHHHhhhhheehhhhhh--cCCCc-hHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999999999999999999995 89999999998753 44332 3457788899999999999999999999999
Q ss_pred HHHHHcCC
Q psy7266 770 TIASQLGA 777 (1175)
Q Consensus 770 ~i~~~L~~ 777 (1175)
.||+.|..
T Consensus 778 ~iyq~Lk~ 785 (1070)
T KOG0434|consen 778 YIYQNLKK 785 (1070)
T ss_pred HHHHHHHh
Confidence 99999964
|
|
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=638.70 Aligned_cols=365 Identities=20% Similarity=0.336 Sum_probs=287.5
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHH
Q psy7266 256 KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTAT 335 (1175)
Q Consensus 256 ~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~i 335 (1175)
+++|++.+.|+.... +..++++|+|+.||||+||.|||||+++.++ .|+++||+||+||+|+|++||||||+||
T Consensus 3 ~~~W~~~~~~~~~~~-----~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~-~D~i~Ry~rm~G~~v~~~~G~D~~Glpi 76 (601)
T PF00133_consen 3 QKFWEENKLFEKQLE-----KNKNKPKFFIHDPPPYANGDLHIGHALNKTI-KDIIARYKRMQGYNVLFPPGWDCHGLPI 76 (601)
T ss_dssp HHHHHHTTCCHHHHH-----CTTTSGEEEEEE---BTSSS-BHHHHHHHHH-HHHHHHHHHCTTSEEEEEEEEB--SHHH
T ss_pred hHHHhhCCCcccccc-----cCCCCCcEEEEeCCCCCCCcccHHHHHHHHH-HHHHHHHHHhCCcEeCCCCCcCCCCcch
Confidence 789999999976411 2346789999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHc-CCC----------------chhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHHHHHHHHcCCE
Q psy7266 336 ETKALEE-GLT----------------PRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGFT 396 (1175)
Q Consensus 336 e~~a~~~-g~~----------------p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~~G~i 396 (1175)
|.++++. |.. +.++++++.+.+++++++||+++||.+ .|+||.|.++++++|.+|+++|+|
T Consensus 77 e~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglI 156 (601)
T PF00133_consen 77 EAKVEKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLI 156 (601)
T ss_dssp HHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSE
T ss_pred hhhHHHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcE
Confidence 9988753 432 346677788899999999999999875 699999999999999999999999
Q ss_pred EeceEEEeeeCCCCcccccceecc--------------------------------------------------------
Q psy7266 397 SSASVEQLHCAQCDRFLADRFVEG-------------------------------------------------------- 420 (1175)
Q Consensus 397 y~~~~~~~~c~~~~~~l~d~~V~g-------------------------------------------------------- 420 (1175)
|++.++++|||.|+|+|||.+|+.
T Consensus 157 yr~~~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~ 236 (601)
T PF00133_consen 157 YRGKKPVNWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVA 236 (601)
T ss_dssp EEEEEEEEEETTTTEEE-GGGEEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEE
T ss_pred EeeCCCCCcCcccccchhhhhcccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHH
Confidence 999999999999999999986640
Q ss_pred --------------------------------------------------c-----CCCccc----------------cC
Q psy7266 421 --------------------------------------------------V-----CPKCRY----------------ED 429 (1175)
Q Consensus 421 --------------------------------------------------~-----cP~c~~----------------~d 429 (1175)
| ||+++. -|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id 316 (601)
T PF00133_consen 237 KDLVEKLSKQEKTKLEDFRGKELVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPID 316 (601)
T ss_dssp HHHHHHHHTTTSSSEEEEECHHHTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCC
T ss_pred HHHHHHHHhhhhhcccccCcceecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecC
Confidence 0 122211 14
Q ss_pred CCCCcccccCCcc------------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhc
Q psy7266 430 ARGDQCDGCGQLI------------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSET 485 (1175)
Q Consensus 430 ~~G~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~ 485 (1175)
.+|...+.+|.+. ..++|.+|+|+|||++++++.++|||++++++++.+++.++++
T Consensus 317 ~~G~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i 396 (601)
T PF00133_consen 317 EDGRFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKI 396 (601)
T ss_dssp CTSTBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTS
T ss_pred CCceEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccc
Confidence 5666666655542 1245788999999999999999999999999999999999976
Q ss_pred CCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCC----------------------------------------
Q psy7266 486 SDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGF---------------------------------------- 525 (1175)
Q Consensus 486 ~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~---------------------------------------- 525 (1175)
. ..|+..++.+.+|| ++++||||||||+||+|||+|.+
T Consensus 397 ~-~~P~~~~~~~~~~i-~~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (601)
T PF00133_consen 397 K-FYPESYRKRFENWI-DNLRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCC 474 (601)
T ss_dssp E-ESSSTCHHHHHHHH-HT--EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTT
T ss_pred e-EEcccchhhhhhhc-cccccchhhccCCCCccceeeecccCccccccccccccccccccccccccccccccccccccc
Confidence 4 45778899999999 68999999999999999998753
Q ss_pred ------CCce--EEecCc---------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccC
Q psy7266 526 ------ENKY--SLSSSP---------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKV 582 (1175)
Q Consensus 526 ------e~~v--vWfds~---------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p 582 (1175)
+.+| |||||+ +|++|+|.| +++.|+||+++|..+...+..++. +..++
T Consensus 475 ~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D--------~~~~G~D~~~~W~~~~l~~~~~l~-~~~pf 545 (601)
T PF00133_consen 475 GGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVD--------LYIEGKDQIRGWFQSSLFLSVALF-GKEPF 545 (601)
T ss_dssp SSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBS--------EEEEEGGGTTTHHHHHHHHHHHHS-SSTSB
T ss_pred ccceEEeeeeccccccccCCcccccccccccchhccccCCcc--------cccCCccchhhHHHHhHhhccccc-cCCch
Confidence 1256 999986 356789998 899999999998765433333332 45677
Q ss_pred eEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCcccc
Q psy7266 583 NHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFS 638 (1175)
Q Consensus 583 ~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~ 638 (1175)
+.+++||||+ .+|+|||||+||+|+|.++++. ||+|++|+|+++.+..++|++||
T Consensus 546 k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 546 KKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEK-YGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp SEEEEE--EEETTSSB-BTTTTB--BHHHHHHH-T-HHHHHHHHHHHS-TTS-EEE-
T ss_pred heeeecccccccceeecccCCCcccCHHHHHHH-hCcHHHHHHHHhcCCcccCcccC
Confidence 9999999985 7899999999999999999997 99999999999888889999986
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=583.37 Aligned_cols=301 Identities=44% Similarity=0.798 Sum_probs=277.6
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
+|+||+|||||||.|||||+++.++ +|+++||+||+|++|+|++|+|+||++|+.+|++.|++|+++|+.+.+.|++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~-~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l 79 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVL-ADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLF 79 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHH-HHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999887 899999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCc
Q psy7266 362 EWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQL 441 (1175)
Q Consensus 362 ~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~ 441 (1175)
++|||++|.+.+|+++.|.+.|+++|.+|+++|++|+++..++||+.|+++|+
T Consensus 80 ~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------------------------- 132 (319)
T cd00814 80 KWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------------------------- 132 (319)
T ss_pred HHcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------------------------
Confidence 99999999999999999999999999999999999999999999999998875
Q ss_pred cccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-CCCchHHHHHHHHhhcCCCcEeeeccC-CCCcc
Q psy7266 442 INAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITRDL-KWGIP 519 (1175)
Q Consensus 442 ~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~wl~~~l~dw~ISR~~-~WG~p 519 (1175)
+.+.++||||+|+++++.|.+++++... .||++.++.+.+||.++++||||||++ +||+|
T Consensus 133 ------------------e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGip 194 (319)
T cd00814 133 ------------------EWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIP 194 (319)
T ss_pred ------------------EEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCee
Confidence 5677899999999999999999998764 589999999999998889999999999 99999
Q ss_pred cCCCCCCCce--EEecCc-c------c---c----ccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCe
Q psy7266 520 VPLPGFENKY--SLSSSP-S------L---V----QFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVN 583 (1175)
Q Consensus 520 iP~~~~e~~v--vWfds~-~------~---~----~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~ 583 (1175)
+|.+ ++++ |||||+ . + . .||.. .....+||+|+||++||+++||+++++++ +++|+
T Consensus 195 vp~~--~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~----~~~~~v~~~G~D~~~fh~~~~pa~l~~~~--~~~~~ 266 (319)
T cd00814 195 VPLD--PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKD----GWPELVHFIGKDIIRFHAIYWPAMLLGAG--LPLPT 266 (319)
T ss_pred CCCC--CCcEEEEehhhHHHHHHHcccccccccchhhhhc----CCCceEEEEeechhhhhHHHHHHHHHhCC--CCCCc
Confidence 9974 5666 999997 1 0 1 12221 23345999999999999999999999886 78899
Q ss_pred EEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccc
Q psy7266 584 HIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSF 637 (1175)
Q Consensus 584 ~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f 637 (1175)
.+++|||++.+|+|||||+||+|+|.++++. ||+|++||||++.+|+++|.+|
T Consensus 267 ~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~-~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 267 RIVAHGYLTVEGKKMSKSRGNVVDPDDLLER-YGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred EeeeeeeEEECCeeecccCCcccCHHHHHHH-cCchHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999999999999996 9999999999999999999998
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >KOG0435|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-64 Score=569.04 Aligned_cols=460 Identities=18% Similarity=0.277 Sum_probs=369.1
Q ss_pred HHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccC
Q psy7266 251 EIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTD 329 (1175)
Q Consensus 251 ~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D 329 (1175)
.||.. .++|.+...+..+. ..++++ ||.+.+|||||.|||||.|.++| .|+++||+||+||+|++++|||
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~-------d~sk~K-YiLsMFPYPSG~LHiGHvRVYTI-sD~laRf~rm~GynVihPMGWD 104 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDS-------DKSKKK-YILSMFPYPSGALHIGHVRVYTI-SDILARFYRMKGYNVIHPMGWD 104 (876)
T ss_pred HHHHHHHHHHhcCCcccccc-------ccCCCc-eEEEecCCCCCcccccceEEEEe-hHHHHHHHHhcCceeecCCccc
Confidence 78888 99999887775422 124555 99999999999999999999999 9999999999999999999999
Q ss_pred CcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeC
Q psy7266 330 EYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCA 407 (1175)
Q Consensus 330 ~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~ 407 (1175)
.+|+|.|.+|.+.|++|..++..+++.+++++.+|||+|||.+ .|.+|+|.++.||+|.+|+++|++|+.+.+|||||
T Consensus 105 aFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDP 184 (876)
T KOG0435|consen 105 AFGLPAENAAIERGVHPASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDP 184 (876)
T ss_pred ccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCc
Confidence 9999999999999999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred CCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC
Q psy7266 408 QCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD 487 (1175)
Q Consensus 408 ~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~ 487 (1175)
.++|+|++++|+ .++++||+|..+|.+...||||++++|+++|++.++..+
T Consensus 185 vD~TVLAnEQVD----------------------------~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~- 235 (876)
T KOG0435|consen 185 VDKTVLANEQVD----------------------------ADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLP- 235 (876)
T ss_pred ccceeecchhhc----------------------------ccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhh-
Confidence 999999999985 245689999999999999999999999999999999765
Q ss_pred CCCchHHHHHHHHhhc----------------------------------------------------------------
Q psy7266 488 QWSSNARVICKAWLKD---------------------------------------------------------------- 503 (1175)
Q Consensus 488 ~~~~~~~~~~~~wl~~---------------------------------------------------------------- 503 (1175)
.||. ++++.++|+.+
T Consensus 236 ~W~~-vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg 314 (876)
T KOG0435|consen 236 EWPE-VKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKG 314 (876)
T ss_pred hhhh-HHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccC
Confidence 5988 88888877321
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 504 -------------------------------------------------------------------------------- 503 (1175)
Q Consensus 504 -------------------------------------------------------------------------------- 503 (1175)
T Consensus 315 ~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~ 394 (876)
T KOG0435|consen 315 VQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQKAFTNLDIR 394 (876)
T ss_pred cccceeeccCCCCceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccccccchhHH
Confidence
Q ss_pred -----------------------CCCcEeeeccCCCCcccCCCCC-----------------------------------
Q psy7266 504 -----------------------GLKPRCITRDLKWGIPVPLPGF----------------------------------- 525 (1175)
Q Consensus 504 -----------------------~l~dw~ISR~~~WG~piP~~~~----------------------------------- 525 (1175)
.|+||.|||||+||+|||+-+|
T Consensus 395 q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e 474 (876)
T KOG0435|consen 395 QNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADE 474 (876)
T ss_pred HHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhh
Confidence 4789999999999999998654
Q ss_pred ---------------CCce--EEecCc-c------------------ccccCCCCCCCCcceEEEEeeccccchhHh---
Q psy7266 526 ---------------ENKY--SLSSSP-S------------------LVQFLPTATPQSKITLYQFMAKDNVPFHSI--- 566 (1175)
Q Consensus 526 ---------------e~~v--vWfds~-~------------------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~--- 566 (1175)
|.+. +|+||+ . -.+|.|.| +++.|++|.-.|..
T Consensus 475 ~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVD--------vYIGG~EHAvlHLlYaR 546 (876)
T KOG0435|consen 475 WVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVD--------VYIGGKEHAVLHLLYAR 546 (876)
T ss_pred heeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCcee--------EEeccHHHHHHHHHHHH
Confidence 1233 889887 1 13445555 89999999877766
Q ss_pred HHHHHHHHhCC--CcccCeEEEeeceee------c-CC-------------------------------CcccccCCCcc
Q psy7266 567 MFPATLVAAGD--QYTKVNHIMATEYLN------Y-ED-------------------------------GKFSKSRGTGV 606 (1175)
Q Consensus 567 ~~pa~l~~~~~--~~~~p~~i~~~g~l~------~-~G-------------------------------~KMSKS~GN~v 606 (1175)
+|.-++...|. ...||+.++..|+|. . .| +|||||++|+|
T Consensus 547 F~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGV 626 (876)
T KOG0435|consen 547 FIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGV 626 (876)
T ss_pred HHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCC
Confidence 34445555553 235667666666542 1 12 59999999999
Q ss_pred CchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CCChh
Q psy7266 607 FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEI-----SPIHE 681 (1175)
Q Consensus 607 ~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~-----~~~~~ 681 (1175)
+|.++++. ||+|++|+|++..+|+..+++|+.+.+... ..++..+|+++.++..- .-++..++. ....+
T Consensus 627 dP~~~v~~-yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi--~rwl~riw~l~~~~~~a---r~~g~~~d~~~~td~~dae 700 (876)
T KOG0435|consen 627 DPADVVLE-YGVDTTRLYILFAAPPRDPINWNESAIPGI--KRWLQRIWALVSQILQA---RDDGKAKDLKKLTDGFDAE 700 (876)
T ss_pred CHHHHHHH-hCchHHHHHHHhhCCcccccccccccchhH--HHHHHHHHHHHHHHHHH---HhcCCcccccccccccchh
Confidence 99999996 999999999999999999999998887643 22344555554443332 112222221 12345
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHc
Q psy7266 682 DFLLLALINRELSAYYSVLD-KAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLL 760 (1175)
Q Consensus 682 d~~l~~~l~~~~~~~~~~~e-~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL 760 (1175)
++.+.+..|.+++.+.++++ .+.++.|+..+|.|.+....-+....-| + .....++..+.+||
T Consensus 701 ~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~~h----~------------~~~~~al~~lv~ml 764 (876)
T KOG0435|consen 701 TRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLVH----S------------PEFERALEALVIML 764 (876)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc----C------------hHHHHHHHHHHHHH
Confidence 67899999999999999996 5669999999999976544333222211 1 01135567778899
Q ss_pred cchhhHHHHHHHHHcCCCc
Q psy7266 761 SPYMPSTASTIASQLGASH 779 (1175)
Q Consensus 761 ~PfmP~~se~i~~~L~~~~ 779 (1175)
+||.||+|+|+|..|+.+.
T Consensus 765 aP~aPh~asE~Ws~l~~~~ 783 (876)
T KOG0435|consen 765 APFAPHVASELWSALANDL 783 (876)
T ss_pred hccCchhHHHHHHHHhccc
Confidence 9999999999999999553
|
|
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-62 Score=558.99 Aligned_cols=290 Identities=21% Similarity=0.345 Sum_probs=262.7
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHc-CCCc-------------
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE-GLTP------------- 346 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~-g~~p------------- 346 (1175)
++|+|.+|||||||.|||||+++.++ +|+++||+||+||+|+|++||||||+||+.++++. |+++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~-~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~ 79 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKIL-KDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFN 79 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHH-HHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHH
Confidence 46999999999999999999999887 99999999999999999999999999999999876 8775
Q ss_pred ---hhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceeccc
Q psy7266 347 ---RQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGV 421 (1175)
Q Consensus 347 ---~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~ 421 (1175)
++++++|.+.|.+++++|||++|| +++|+++.|.+.++++|.+|+++|+||++.++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~---------------- 143 (338)
T cd00818 80 AKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW---------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee----------------
Confidence 689999999999999999996554 67899999999999999999999999999988877
Q ss_pred CCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q psy7266 422 CPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWL 501 (1175)
Q Consensus 422 cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl 501 (1175)
+++.+.++||||+++++++.+++++++.+ .+|...++++.+|+
T Consensus 144 ------------------------------------~v~~~~~~qwf~~l~~~~~~l~~~~~~~~-~~P~~~~~~~~~~l 186 (338)
T cd00818 144 ------------------------------------PLIYRATPQWFIRVTKIKDRLLEANDKVN-WIPEWVKNRFGNWL 186 (338)
T ss_pred ------------------------------------EEEEEecCeEEEEcHHHHHHHHHHHhcCc-EECHHHHHHHHHHH
Confidence 46788999999999999999999998753 35778899999999
Q ss_pred hcCCCcEeeeccCCCCcccCCCCCC----------Cce--EEecCc--------------cccccCCCCCCCCcceEEEE
Q psy7266 502 KDGLKPRCITRDLKWGIPVPLPGFE----------NKY--SLSSSP--------------SLVQFLPTATPQSKITLYQF 555 (1175)
Q Consensus 502 ~~~l~dw~ISR~~~WG~piP~~~~e----------~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~ 555 (1175)
++|+|||||||++||+|+|+|.++ ++| |||||+ +|++|||.+ +++
T Consensus 187 -~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d--------~~~ 257 (338)
T cd00818 187 -ENRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPAD--------FIL 257 (338)
T ss_pred -hcchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCe--------EEe
Confidence 579999999999999999998765 567 999996 256789987 899
Q ss_pred eeccccc--hhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCC
Q psy7266 556 MAKDNVP--FHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPEN 632 (1175)
Q Consensus 556 ~GkD~i~--fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~ 632 (1175)
+|+||++ ||.++||++++. +..+|+.+++||+++ .+|+|||||+||+|+|.|+++. ||+|++||||++..+.+
T Consensus 258 ~GkDii~~wf~~~~~~~~~~~---~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~-~~~D~~R~~l~~~~~~~ 333 (338)
T cd00818 258 EGSDQTRGWFYSLLLLSTALF---GKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDK-YGADALRLWVASSDVYA 333 (338)
T ss_pred ecchHHhHHHHHHHHHHHHhc---CCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHH-cCcHHHHHHHHhCCCcc
Confidence 9999995 999999998753 256789999999986 5899999999999999999996 99999999999999999
Q ss_pred CCccc
Q psy7266 633 QDTSF 637 (1175)
Q Consensus 633 ~D~~f 637 (1175)
+|++|
T Consensus 334 ~d~~~ 338 (338)
T cd00818 334 EDLRF 338 (338)
T ss_pred CCCCC
Confidence 99886
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >KOG0433|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=535.13 Aligned_cols=478 Identities=19% Similarity=0.262 Sum_probs=376.0
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHH-HHHH------HcCCCchh---
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATE-TKAL------EEGLTPRQ--- 348 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie-~~a~------~~g~~p~~--- 348 (1175)
.+..|+..+ +||.|||||+++.+| .|++.||+-++|.+++|++|||+||+|+| .+|. +..++|.+
T Consensus 57 q~~~f~L~d----anG~lhlghalnkIL-kdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~ 131 (937)
T KOG0433|consen 57 QRVEFELKD----ANGNLHLGHALNKIL-KDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRA 131 (937)
T ss_pred cCceEEEec----cCCCccchHHHHHHH-HHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHH
Confidence 345566666 999999999999998 99999999999999999999999999999 5654 22346654
Q ss_pred ----hHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec---
Q psy7266 349 ----ICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE--- 419 (1175)
Q Consensus 349 ----~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~--- 419 (1175)
++++-.+..++.++++||--||-. -|++|.|...-.++|.+|+++|+||++..+|+|+|..+|.|++.++|
T Consensus 132 ~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~ 211 (937)
T KOG0433|consen 132 KARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYND 211 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCc
Confidence 445566777888999999999965 59999999999999999999999999999999999999999987654
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 420 -------------------------------------------------------------------------------- 419 (1175)
Q Consensus 420 -------------------------------------------------------------------------------- 419 (1175)
T Consensus 212 nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~f 291 (937)
T KOG0433|consen 212 NHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEF 291 (937)
T ss_pred CCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhh
Confidence
Q ss_pred -----------ccC----------------------------------------CCcccc----------------CCCC
Q psy7266 420 -----------GVC----------------------------------------PKCRYE----------------DARG 432 (1175)
Q Consensus 420 -----------g~c----------------------------------------P~c~~~----------------d~~G 432 (1175)
|+| |++|.+ |.+|
T Consensus 292 e~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G 371 (937)
T KOG0433|consen 292 EKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRG 371 (937)
T ss_pred hhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCC
Confidence 000 122221 3455
Q ss_pred CcccccCCcc------------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC
Q psy7266 433 DQCDGCGQLI------------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ 488 (1175)
Q Consensus 433 ~~c~~~g~~~------------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~ 488 (1175)
....+.|..+ +...|.+|+-||+..|+++|.++|||+++.+++....+.+++++ .
T Consensus 372 ~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk-~ 450 (937)
T KOG0433|consen 372 CYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVK-V 450 (937)
T ss_pred ceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhce-e
Confidence 5444444221 13468999999999999999999999999999999999999885 4
Q ss_pred CCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCC-------------------------------------------
Q psy7266 489 WSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGF------------------------------------------- 525 (1175)
Q Consensus 489 ~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~------------------------------------------- 525 (1175)
.|....+.+..++ ....+|||||||.||+|||.-+.
T Consensus 451 ~P~~~~~rl~~~~-~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~ 529 (937)
T KOG0433|consen 451 APGDSDLRLKQLV-TTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVR 529 (937)
T ss_pred CCcchHHHHHHHH-cCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhc
Confidence 6778888888999 68889999999999999997431
Q ss_pred -----------CCce--EEecCc-cccccCCCCCCCCcceEEEEeecccc--chhHhHHHHHHHHhCCCcccCeEEEeec
Q psy7266 526 -----------ENKY--SLSSSP-SLVQFLPTATPQSKITLYQFMAKDNV--PFHSIMFPATLVAAGDQYTKVNHIMATE 589 (1175)
Q Consensus 526 -----------e~~v--vWfds~-~~~~~wp~~~~~~~v~~~~~~GkD~i--~fh~~~~pa~l~~~~~~~~~p~~i~~~g 589 (1175)
-.++ |||||+ .|...-+.. ...+--+++-|.|+. ||.+.+...+... +..|++.+++||
T Consensus 530 e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~~--~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q---~kAPYk~vivHG 604 (937)
T KOG0433|consen 530 EIPDIASEYKKGTDIMDVWFDSGSSWSAVLDNE--REHVADVYLEGVDQFRGWFQSSLLTSVAVQ---NKAPYKKVIVHG 604 (937)
T ss_pred ccchhHHHhccCCceeeeEecCCCcceeecCCC--CCcceeeEEecchhcchHHHHHHHHHHHHh---ccCCchheeeee
Confidence 0134 999998 555444421 012223788899987 5666554332221 357789999999
Q ss_pred ee-ecCCCcccccCCCccCchhhhhcC------CCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHH
Q psy7266 590 YL-NYEDGKFSKSRGTGVFGNNAKDTG------LPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRAL 662 (1175)
Q Consensus 590 ~l-~~~G~KMSKS~GN~v~~~d~i~~~------~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~ 662 (1175)
|. +.+|.|||||+||||+|+.+++ | ||+|+||||.+. .....|+.....-+... .+-+.+++| ++
T Consensus 605 FtlDE~G~KMSKSlGNVidP~~v~~-G~~k~payGaD~LR~WVA~-~~~t~d~~iGp~il~qv--~e~l~K~R~----T~ 676 (937)
T KOG0433|consen 605 FTLDENGNKMSKSLGNVVDPTMVTD-GSLKQPAYGADGLRFWVAG-SENTGESKIGPKILDQV--DEKLIKFRN----TF 676 (937)
T ss_pred eEecCCccchhhcccCcCCHHHHhC-CcccCCCccccceeeeeec-ccccCceecCHHHHHHH--HHHHHHHHh----HH
Confidence 97 6889999999999999999998 6 999999999995 55667899998877643 233345555 66
Q ss_pred HHHHHhcCC------CCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCC
Q psy7266 663 SFIEKNYGS------TIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKG 734 (1175)
Q Consensus 663 ~~~~~~~~~------~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~ 734 (1175)
+|+..+..+ .+|-.++.-.|+.++.++..+++++++.|++|+|+++++.|..| .++++.|+...|.+.+...
T Consensus 677 RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~ 756 (937)
T KOG0433|consen 677 RFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDK 756 (937)
T ss_pred HHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCC
Confidence 676655432 34555667789999999999999999999999999999999888 5899999999999866442
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCC
Q psy7266 735 SPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 735 ~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~ 778 (1175)
..+. ...++..++.+++..++..++||+||++||+|+.|...
T Consensus 757 -~~s~-~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~ 798 (937)
T KOG0433|consen 757 -VGSE-SRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS 798 (937)
T ss_pred -CCcH-HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC
Confidence 1222 23456666788999999999999999999999999843
|
|
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=517.89 Aligned_cols=280 Identities=23% Similarity=0.394 Sum_probs=255.4
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCC-------------Cchh
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL-------------TPRQ 348 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~-------------~p~~ 348 (1175)
+|+|++|||||||.|||||+++.++ +|+++||+||+||+|+|++|||+||+||+.+|++.+. +|.+
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~-~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHII-ADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHH-HHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHH
Confidence 5899999999999999999998776 9999999999999999999999999999999999888 8899
Q ss_pred hHHHHHHHHHHHHhhcccccc--ccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCcc
Q psy7266 349 ICDKYFAIHREVYEWFEIDFD--YFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCR 426 (1175)
Q Consensus 349 ~~~~~~~~~~~~~~~lgi~~D--~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~ 426 (1175)
+++++.+.|++++++|||++| .+++|+++.|.+.|+++|.+|+++|+||++..++
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v----------------------- 136 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV----------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee-----------------------
Confidence 999999999999999999999 5668999999999999999999999999986544
Q ss_pred ccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCC
Q psy7266 427 YEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLK 506 (1175)
Q Consensus 427 ~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~ 506 (1175)
+..+|||+++++++++++++++++. .+|+..++++.+||++.+
T Consensus 137 -----------------------------------~~~~~~f~~~~~l~~~~~~~~~~~~-~~p~~~~~~~~~~l~~~~- 179 (312)
T cd00668 137 -----------------------------------RITEQWFFDMPKFKEKLLKALRRGK-IVPEHVKNRMEAWLESLL- 179 (312)
T ss_pred -----------------------------------EeeeeEEEEcHHHHHHHHHHHhcCC-cCChHHHHHHHHHHhCCC-
Confidence 3567999999999999999998875 467788899999996555
Q ss_pred cEeeeccCCCCcccCCCCCCCce--EEecCc--------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHH
Q psy7266 507 PRCITRDLKWGIPVPLPGFENKY--SLSSSP--------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPA 570 (1175)
Q Consensus 507 dw~ISR~~~WG~piP~~~~e~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa 570 (1175)
||||||+++||+|+| ++| |||||+ .|.+|||.+ +|++|+||++||..++++
T Consensus 180 d~~isR~~~WG~~~P-----~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~d--------i~~~G~D~~~~h~~~~~~ 246 (312)
T cd00668 180 DWAISRQRYWGTPLP-----EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPAD--------WHLIGKDILRGWANFWIT 246 (312)
T ss_pred CeEEeccCCCCCcCC-----cccccchhhccHHHHHHcCCCccchhhhhcCCce--------EEEEecchhhhHHHHHHH
Confidence 999999999999999 345 999997 245678887 999999999999999999
Q ss_pred HHHHhCCCcccCeEEEeeceeecCC-CcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccc
Q psy7266 571 TLVAAGDQYTKVNHIMATEYLNYED-GKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSF 637 (1175)
Q Consensus 571 ~l~~~~~~~~~p~~i~~~g~l~~~G-~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f 637 (1175)
++.+++ +..+|+.+++||||+.+| +|||||+||+|+|.|+++. ||+|++||||++..++++|.+|
T Consensus 247 ~~~~~~-~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~-~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 247 MLVALF-GEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEK-YGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHhc-CCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHHH-cCcHHHHHHHHhcCCccCCCCC
Confidence 998876 235789999999998887 9999999999999999997 9999999999999999999887
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=510.19 Aligned_cols=280 Identities=24% Similarity=0.436 Sum_probs=255.5
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
+|+||+|||||||.+||||+++.++ +|+++||+|++|++|+|++|+|+||+||+..|++.|++|.++++++.+.+++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~-~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~ 79 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTI-GDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQL 79 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHH-HHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998665 999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 362 EWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 362 ~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
++|||++|+ +.+|++|.|.+.|+++|.+|+++|+||++...++||
T Consensus 80 ~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~--------------------------------- 126 (314)
T cd00812 80 KRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC--------------------------------- 126 (314)
T ss_pred HHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee---------------------------------
Confidence 999999996 457899999999999999999999999999999998
Q ss_pred CccccccccCCcccCCCCccEEeecccccccc--hhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCC
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLEL--PKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWG 517 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG 517 (1175)
+.++||||++ +++++.+.++++++. .||++.++.+.+|++ |||+++||
T Consensus 127 ----------------------~~~~~~f~~l~~~~~~~~l~~~l~~~~-~~p~~~~~~~~~~l~-------isR~~~wG 176 (314)
T cd00812 127 ----------------------KLLDQWFLKYSETEWKEKLLKDLEKLD-GWPEEVRAMQENWIG-------CSRQRYWG 176 (314)
T ss_pred ----------------------CccceEEEEcCcHHHHHHHHHHHHhcC-cCCHHHHHHHHHHhe-------eeeecCCc
Confidence 2357999999 999999999999874 599999999999994 99999999
Q ss_pred cccCCCCCCCce-EEecCc-------------------------cccccCCCCCCCCcceEEEEeeccccchhH---hHH
Q psy7266 518 IPVPLPGFENKY-SLSSSP-------------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHS---IMF 568 (1175)
Q Consensus 518 ~piP~~~~e~~v-vWfds~-------------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~---~~~ 568 (1175)
+|+|+ ...+ |||||+ .|.+|||.| +|++|+||++||+ ++|
T Consensus 177 ipvP~---~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~d--------i~v~G~D~i~~h~~~~~~~ 245 (314)
T cd00812 177 TPIPW---TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVD--------IYIGGKEHAPNHLLYSRFN 245 (314)
T ss_pred CCcCc---ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCe--------eeecchhHHHHHHHHHHHH
Confidence 99996 2334 999986 144678887 9999999999997 789
Q ss_pred HHHHHHhCC-CcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccH
Q psy7266 569 PATLVAAGD-QYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSW 639 (1175)
Q Consensus 569 pa~l~~~~~-~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~ 639 (1175)
++++++.++ ...+|+++++||||+.+|+|||||+||+|++.|+++. +|+|++||||++.++ .|.+|+|
T Consensus 246 ~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~~-~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 246 HKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIKK-YGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred HHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHHH-hCcHHHHHHHHhcCC--cCCCCCC
Confidence 999998763 1267899999999999999999999999999999996 999999999999877 7999986
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >KOG0437|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-47 Score=430.38 Aligned_cols=494 Identities=19% Similarity=0.250 Sum_probs=370.9
Q ss_pred hHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccc
Q psy7266 249 SEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSG 327 (1175)
Q Consensus 249 ~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G 327 (1175)
..+||++ |+.|++...|+.+... .++ ..+++|++|.|.||.||.||+||+++.. ..|+..-|+|++|++|+|++|
T Consensus 14 L~eiEk~~q~~W~~e~~fevda~~--el~-~~~~Kff~tfpyPYMNG~LHlGH~FslS-K~eFa~~y~rL~Gk~vLfPfg 89 (1080)
T KOG0437|consen 14 LLEIEKKYQKKWDTEKVFEVDAPN--ELQ-KSKPKFFVTFPYPYMNGRLHLGHAFSLS-KVEFASGYERLQGKNVLFPFG 89 (1080)
T ss_pred HHHHHHHHHHhhhhhhheeccCch--hcc-cccCceeEeccccccCceeeccceeehh-hhHHHHHHHHhcCceEEeecc
Confidence 4589999 9999999999886532 233 3578999999999999999999999765 489999999999999999999
Q ss_pred cCCcchHHHHHHHHc-------CCCc------------------------------------------------------
Q psy7266 328 TDEYGTATETKALEE-------GLTP------------------------------------------------------ 346 (1175)
Q Consensus 328 ~D~~G~~ie~~a~~~-------g~~p------------------------------------------------------ 346 (1175)
++|.|.||...|.+. |.+|
T Consensus 90 FHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~de 169 (1080)
T KOG0437|consen 90 FHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDE 169 (1080)
T ss_pred cccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHH
Confidence 999999998766421 2111
Q ss_pred --------hhhHHHHHHHHHHHHhhccccccccCC--CC--CHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccc
Q psy7266 347 --------RQICDKYFAIHREVYEWFEIDFDYFGR--TS--TPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLA 414 (1175)
Q Consensus 347 --------~~~~~~~~~~~~~~~~~lgi~~D~~~~--T~--~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~ 414 (1175)
..+...|--...+++++||..+||.+. |+ +|.|-.+|+|.|++|.+.|.|..+.+...|||.+++++.
T Consensus 170 EI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCm 249 (1080)
T KOG0437|consen 170 EIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCM 249 (1080)
T ss_pred HhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCccc
Confidence 011111223446889999999999762 44 789999999999999999999999999999999999999
Q ss_pred ccee-------------------c---------------------------c-c-C---CCccc----------------
Q psy7266 415 DRFV-------------------E---------------------------G-V-C---PKCRY---------------- 427 (1175)
Q Consensus 415 d~~V-------------------~---------------------------g-~-c---P~c~~---------------- 427 (1175)
|+.- + | | | |.|.|
T Consensus 250 DHDR~sGEgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~ 329 (1080)
T KOG0437|consen 250 DHDRASGEGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATE 329 (1080)
T ss_pred ccccccCCCCCcceEEEEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeeh
Confidence 8511 0 0 0 1 21110
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 428 -------------------------------------------------------------------------------- 427 (1175)
Q Consensus 428 -------------------------------------------------------------------------------- 427 (1175)
T Consensus 330 raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~k 409 (1080)
T KOG0437|consen 330 RAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKK 409 (1080)
T ss_pred HHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhh
Confidence
Q ss_pred ---------------------cCCCCCcccc--cCCc-------------------------------------ccc---
Q psy7266 428 ---------------------EDARGDQCDG--CGQL-------------------------------------INA--- 444 (1175)
Q Consensus 428 ---------------------~d~~G~~c~~--~g~~-------------------------------------~~~--- 444 (1175)
...+||.|.. |-.+ +..
T Consensus 410 K~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~ 489 (1080)
T KOG0437|consen 410 KPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKP 489 (1080)
T ss_pred cccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhh
Confidence 0123433321 1110 000
Q ss_pred ---------------ccccCCcccCCCCccEEeecccccccch--hHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCc
Q psy7266 445 ---------------IELIQPRCKQCSQAPTVKSSTQLFLELP--KIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKP 507 (1175)
Q Consensus 445 ---------------~el~~~~c~r~~~~~~~~~~~qwfl~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~d 507 (1175)
.|-..++..|||..+++-..+|||+++. .|+....+.++... .+.++.|+.+..-| ++|..
T Consensus 490 ~i~~~li~~g~a~~y~EPEkqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~l~-~f~dEtR~~fE~tL-dWL~~ 567 (1080)
T KOG0437|consen 490 KIKTDLIETGDALKYNEPEKQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLENLN-TFSDETRNGFEDTL-DWLGQ 567 (1080)
T ss_pred HHHHHHHhcccceeecCcchhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhhhh-ccCHHHHHHHHHHH-HHHHh
Confidence 0123457899999999999999999997 59999999999875 47889998887777 57789
Q ss_pred EeeeccCCCCcccCCCCC-------------------------------------CCce---EE----ecCc--------
Q psy7266 508 RCITRDLKWGIPVPLPGF-------------------------------------ENKY---SL----SSSP-------- 535 (1175)
Q Consensus 508 w~ISR~~~WG~piP~~~~-------------------------------------e~~v---vW----fds~-------- 535 (1175)
|.+||....|+.+|++.. .++. || ++.+
T Consensus 568 wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~ 647 (1080)
T KOG0437|consen 568 WACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIP 647 (1080)
T ss_pred hhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCcc
Confidence 999999999999998731 1122 44 3322
Q ss_pred ---------cccccCCCCCCCCcceEEEEeeccccchhHhHHH---HHHHHhCCCcccCeEEEeeceeecCCCcccccCC
Q psy7266 536 ---------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFP---ATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRG 603 (1175)
Q Consensus 536 ---------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~p---a~l~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~G 603 (1175)
+|++|||.| +++.|||.++.|..||. ..++. ...||+.|.+||||.++++|||||.|
T Consensus 648 ~e~L~~lr~eF~Y~YPiD--------lrvsGKDLi~NHLtfflynHvAl~~---~k~WPkgiraNGHLmLNsEKMSKSTG 716 (1080)
T KOG0437|consen 648 EEALSNLRREFEYFYPID--------LRVSGKDLIPNHLTFFLYNHVALFP---EKKWPKGIRANGHLMLNSEKMSKSTG 716 (1080)
T ss_pred HHHHHHHHHhhhccccee--------eeeccccccccceeEeeeehhhhcc---cccCccceeeCceEEecchhhccccC
Confidence 899999998 89999999988877552 22222 36899999999999999999999999
Q ss_pred CccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhH
Q psy7266 604 TGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDF 683 (1175)
Q Consensus 604 N~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~ 683 (1175)
|+.+.++.++. +|+|+.|+.|+..+..-.|.||......+ -.+ .+.+++.-+-.++... +..-........|+
T Consensus 717 NfmTL~qaieK-Fgad~tRlalAdaGD~veDANF~ea~AnA----aIL-RLyt~~ew~eEm~~~~-s~LrtGp~~~FaDr 789 (1080)
T KOG0437|consen 717 NFMTLEQAIEK-FGADGTRLALADAGDGVEDANFVEANANA----AIL-RLYTYVEWIEEMCENR-SSLRTGPASTFADR 789 (1080)
T ss_pred CeeeHHHHHHH-hCccceeeeeecccCCcccchhHHhcccH----HHH-HHHHHHHHHHHHHhhH-HhhccCchhhHHHH
Confidence 99999999996 99999999999988888899999875422 111 3444443333333311 11001111236799
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccc
Q psy7266 684 LLLALINRELSAYYSVLDKAKLRDGIRYI-LNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSP 762 (1175)
Q Consensus 684 ~l~~~l~~~~~~~~~~~e~~~~~~a~~~i-~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~P 762 (1175)
-+.+.+|.++....++++...|++|+..- ++|...-++|-+.+.- + +.-.+++..+.+...||+|
T Consensus 790 vf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~qaArD~Yrel~g~-----~---------mh~dLv~r~ietqtlLLaP 855 (1080)
T KOG0437|consen 790 VFENEMNALIAKTERAYEDTLFKDALKYGFYDLQAARDMYRELCGE-----G---------MHRDLVFRFIETQTLLLAP 855 (1080)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhcc-----c---------ccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999994 8888887888776541 0 0111346778888999999
Q ss_pred hhhHHHHHHHHHcCCCcc
Q psy7266 763 YMPSTASTIASQLGASHL 780 (1175)
Q Consensus 763 fmP~~se~i~~~L~~~~~ 780 (1175)
|.||++|.||+.++.++.
T Consensus 856 i~Ph~aeyiw~~~~~~~~ 873 (1080)
T KOG0437|consen 856 ICPHLAEYIWRTVLKKNF 873 (1080)
T ss_pred cchHHHHHHHHHhccCCc
Confidence 999999999999987643
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=408.04 Aligned_cols=351 Identities=16% Similarity=0.099 Sum_probs=262.8
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHH-HcCCCcccccccCCcchHHHHHHHHcCCC-chhhHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCR-LVNRNTLYVSGTDEYGTATETKALEEGLT-PRQICDKYFAIHRE 359 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r-~~G~~v~~~~G~D~~G~~ie~~a~~~g~~-p~~~~~~~~~~~~~ 359 (1175)
++|+|.|. |.+.+||||+|++++ .|+++||+| ..||+|.|++|+||||.+|+..|++.|++ +.++|+.|.+.|.+
T Consensus 62 ~~Y~CGPT--vYd~~HiGhart~v~-~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~ 138 (651)
T PTZ00399 62 RWYTCGPT--VYDSSHLGHARTYVT-FDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFE 138 (651)
T ss_pred EEEEeCCC--ccCCcccccchHHHH-HHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 45565555 559999999998665 999999999 89999999999999999999999999999 99999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
+++.|||.++.+.+|. .+|.+.|..++.+|+++|++|..+..++|++..
T Consensus 139 d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~------------------------------ 187 (651)
T PTZ00399 139 DMKALNVRPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA------------------------------ 187 (651)
T ss_pred HHHHcCCCCCccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchh------------------------------
Confidence 9999999987766544 379999999999999999999987777776652
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC-CCcEe-eec-----
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDG-LKPRC-ITR----- 512 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~-l~dw~-ISR----- 512 (1175)
|.+. ...+.+.. |...++....+..++ +.+-+ ++|
T Consensus 188 ----------------------------------f~~~-~~~Yg~L~---p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DF 229 (651)
T PTZ00399 188 ----------------------------------FRKA-GHVYPKLE---PESVADEDRIAEGEGALGKVSGEKRSPNDF 229 (651)
T ss_pred ----------------------------------cccc-hhhHHhhC---hhhcCCHHHHhcccCCccccCcCCCCCccH
Confidence 1111 00011000 000000000111111 11111 233
Q ss_pred -------------cCCCCcccCCCCCCCceEEecCcccccc--CCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC
Q psy7266 513 -------------DLKWGIPVPLPGFENKYSLSSSPSLVQF--LPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD 577 (1175)
Q Consensus 513 -------------~~~WG~piP~~~~e~~vvWfds~~~~~~--wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~ 577 (1175)
.-.||-..|.|+.|+.+ .-..+ .|.| +|..|.|++|.|+-...|.-.+...
T Consensus 230 aLWk~~kpgep~W~SpwG~GrPGWHiECsa------m~~~~lg~~~D--------Ih~gG~DL~FPHHeNEiAQseA~~~ 295 (651)
T PTZ00399 230 ALWKASKPGEPSWDSPWGKGRPGWHIECSA------MASNILGDPID--------IHSGGIDLKFPHHDNELAQSEAYFD 295 (651)
T ss_pred HhhCCCCCCCCCCCCCCCCCCCCchHHHHH------HHHHHcCCcce--------eeccCCCCCCCcchhHHHHHHHhhC
Confidence 23455555555433322 00011 1333 8999999999999988887766542
Q ss_pred CcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHH
Q psy7266 578 QYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNF 657 (1175)
Q Consensus 578 ~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~ 657 (1175)
..++.+.++++|||+++|+|||||+||+|+|.|+++. ||+|++||||++. +..+|++|+++.+....|.+ +.+.|+
T Consensus 296 ~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLek-ygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~~~--~~l~n~ 371 (651)
T PTZ00399 296 KHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSK-YTARQIRLLFLLH-KWDKPMNYSDESMDEAIEKD--KVFFNF 371 (651)
T ss_pred CCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHH-cChHHHHHHHHhc-CCCCCCccCHHHHHHHHHHH--HHHHHH
Confidence 2366788888899999999999999999999999996 9999999999975 88899999999998776553 568888
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHH
Q psy7266 658 INRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQ 724 (1175)
Q Consensus 658 ~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~ 724 (1175)
+.|+..++...... ....+...|+|++..++.+...+.++| ++|+++.|+..|++|++.+|.|++
T Consensus 372 ~~rl~s~l~~~~~~--~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi~ 437 (651)
T PTZ00399 372 FANVKIKLRESELT--SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYLN 437 (651)
T ss_pred HHHHHHHHhhcccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 88877665432110 111235678999999999999999999 789999999999999999999997
|
|
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=399.81 Aligned_cols=346 Identities=19% Similarity=0.214 Sum_probs=261.6
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
.+-++.+.|||+|++||||++++++ .|+++||+|++||+|+|++|+|+||.+|...|++.|++|.+++++|.+.|.+++
T Consensus 23 ~v~~yvcgPtvy~~~HiGHar~~v~-~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVV-FDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred cceEEEeCCccCCCcccccchhHHH-HHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3444455556789999999998776 999999999999999999999999999999999999999999999999999999
Q ss_pred hhccc-cccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCC
Q psy7266 362 EWFEI-DFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 362 ~~lgi-~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
++||| .+|++.++++ |.+.+++++.+|+++|++|+++..|+||+..-. .+| +
T Consensus 102 ~~Lgi~~~d~~~r~t~--~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~------------------~yg-------~ 154 (463)
T PRK00260 102 DALNVLPPDIEPRATE--HIPEIIELIERLIDKGHAYEADGDVYFDVRKFP------------------DYG-------K 154 (463)
T ss_pred HHcCCCCCCccccccc--cHHHHHHHHHHHHHCCCEEEecCeEEEeccccc------------------ccc-------c
Confidence 99999 6788877774 999999999999999999999999999988511 122 2
Q ss_pred ccc--cccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC---CCCchHHHHHHHHhhcCCCcEeeeccCC
Q psy7266 441 LIN--AIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD---QWSSNARVICKAWLKDGLKPRCITRDLK 515 (1175)
Q Consensus 441 ~~~--~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~---~~~~~~~~~~~~wl~~~l~dw~ISR~~~ 515 (1175)
+.. ..++. .|..++. .. .++++. -|.... .|-.-| .-.
T Consensus 155 ls~~~~~~~~------~~~~~~~----------~~--------~K~~~~DF~Lwk~~~---------~~~~~w----~s~ 197 (463)
T PRK00260 155 LSGRNLDELQ------AGARVEV----------AE--------EKRDPLDFALWKAAK---------PGEPSW----ESP 197 (463)
T ss_pred CCCCCHHHHh------ccCcCCc----------cc--------CCCCccccceecCCC---------CCCCCC----CCC
Confidence 110 00000 0100000 00 001100 022110 111123 446
Q ss_pred CCcccCCCCCCCce-EEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecC
Q psy7266 516 WGIPVPLPGFENKY-SLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYE 594 (1175)
Q Consensus 516 WG~piP~~~~e~~v-vWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~ 594 (1175)
||...|.|+-|+.+ .| .+...+ .+ +|..|.|++++|+....|.-.+.. +.++++.++++|+|+.+
T Consensus 198 ~g~grpgWhiecsam~~-------~~lg~~---~D---ih~gG~DlifpHh~neiaqs~a~~-g~p~~~~w~H~g~v~~~ 263 (463)
T PRK00260 198 WGKGRPGWHIECSAMST-------KYLGET---FD---IHGGGADLIFPHHENEIAQSEAAT-GKPFANYWMHNGFVTVN 263 (463)
T ss_pred CCCCCCChhHHHHHHHH-------HhcCCC---cc---eecCccccCCCchHhHHHHHHHhc-CCCcceEEEEccEEccC
Confidence 89999999755433 11 122221 11 899999999999998877655543 35666888999999999
Q ss_pred CCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy7266 595 DGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIP 674 (1175)
Q Consensus 595 G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p 674 (1175)
|+|||||+||+|+|.|+++. ||+|++|||+++ .++.++++|+++.+.... ..++.++|++.++. .
T Consensus 264 G~KMSKS~GN~i~~~dll~~-~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~--~~~~rl~~~~~~~~----~------- 328 (463)
T PRK00260 264 GEKMSKSLGNFFTIRDLLKK-YDPEVLRFFLLS-AHYRSPLNFSEEALEQAK--KALERLYNALAETA----L------- 328 (463)
T ss_pred CCcccCcCCCCCCHHHHHHH-cCchHhHHHHHh-CCCCCCCccCHHHHHHHH--HHHHHHHHHHHHhh----h-------
Confidence 99999999999999999996 999999999997 677899999999876542 33556666555432 0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q psy7266 675 EISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQT 725 (1175)
Q Consensus 675 ~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~ 725 (1175)
...|.|++..++.++..+.++| ++|+++.|+..|++|++..|.|++.
T Consensus 329 ----~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~ 376 (463)
T PRK00260 329 ----GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALET 376 (463)
T ss_pred ----ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhc
Confidence 1356788999999999999999 5999999999999999999999865
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=393.76 Aligned_cols=365 Identities=18% Similarity=0.196 Sum_probs=267.3
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCccccc----------ccCCcchHHHHHHHHcCCCchh
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVS----------GTDEYGTATETKALEEGLTPRQ 348 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~----------G~D~~G~~ie~~a~~~g~~p~~ 348 (1175)
..+++-++++.|+|++++||||+++++. .|+++||+|++||+|.|++ |+|+||.+|...|++.|++|.+
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~-~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e 98 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVF-QDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLE 98 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHH-HHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHH
Confidence 3457888888999999999999998655 9999999999999999997 8999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCcccc
Q psy7266 349 ICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYE 428 (1175)
Q Consensus 349 ~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~ 428 (1175)
++++|.+.|.++++.|||.++.+. +..++|.+.+++++.+|+++|++|+....|+||+.. ||.
T Consensus 99 ~a~~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~------------~~~---- 161 (490)
T PRK14536 99 IAAHYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT------------FPS---- 161 (490)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc------------ccc----
Confidence 999999999999999999996655 333679999999999999999999999999999962 332
Q ss_pred CCCCCcccccCCccc--cccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhh-cCC
Q psy7266 429 DARGDQCDGCGQLIN--AIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLK-DGL 505 (1175)
Q Consensus 429 d~~G~~c~~~g~~~~--~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~-~~l 505 (1175)
||++.. ..++.. |..+ ... .+..+.+... =|.. ..+
T Consensus 162 ---------YG~Ls~~~~~~l~~------g~~v----------~~~---------------~~K~np~DFa-LWK~~~~~ 200 (490)
T PRK14536 162 ---------YGSLASAAVEDLQA------GARI----------EHD---------------TNKRNPHDFV-LWFTRSKF 200 (490)
T ss_pred ---------hhhhcCCCHHHhhc------CCcC----------CCC---------------CCCCCchhch-hcccccCC
Confidence 222210 001100 1000 000 0111111111 1321 233
Q ss_pred CcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEE
Q psy7266 506 KPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHI 585 (1175)
Q Consensus 506 ~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i 585 (1175)
.++.++++..||.+.|.|+-|+.+ .-.+|.... + .+|.+|.|++++|+.+++|+..++. +.++++.+
T Consensus 201 ~~~~~~W~SpWG~GRPGWHIECsa------Ms~~~lg~~-----~-DIH~GG~DliFPHHeneiAqs~a~~-g~~~~~~w 267 (490)
T PRK14536 201 ENHALTWDSPWGRGYPGWHIECSA------MSMKYLGEQ-----C-DIHIGGVDHIRVHHTNEIAQCEAAT-GKPWVRYW 267 (490)
T ss_pred CCCCCcccCCCCCCCCChHHHHHH------HHHHHcCCc-----e-eEEeccccCCCcchhhHHHHHHHhc-CCCcceEE
Confidence 455677889999999999754433 112233322 1 2899999999999999999988864 46888999
Q ss_pred EeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy7266 586 MATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFI 665 (1175)
Q Consensus 586 ~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~ 665 (1175)
+++|+|+++|+|||||+||+|++.|+++.||+++++|||+++ .++.++++|+++.|.+..| ++.++.+++.++.
T Consensus 268 ~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~-----~~~rl~~~~~~~~ 341 (490)
T PRK14536 268 LHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLG-GHYRSQLAFSWEALKTAKA-----ARRSLVRRVARVV 341 (490)
T ss_pred EEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHh-CCCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 999999999999999999999999999978999999999998 8888999999999986543 3444444444332
Q ss_pred HHhcCCCCC-CCCC----C-hhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Q psy7266 666 EKNYGSTIP-EISP----I-HEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQ 721 (1175)
Q Consensus 666 ~~~~~~~~p-~~~~----~-~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~ 721 (1175)
......... .... . ..+..+...+..+...+.++| ++++++.|+..|+++++..|.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~~n~ 404 (490)
T PRK14536 342 DAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSV 404 (490)
T ss_pred HhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Confidence 211111000 0000 0 000011123456678899999 799999999999999987763
|
|
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=385.24 Aligned_cols=346 Identities=15% Similarity=0.161 Sum_probs=254.0
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
++-++.+.|||+|++||||+++++. .|+++||+|++||+|+|++|+|+||.+|+..|++.|++|.++++.|.+.|.+++
T Consensus 21 ~v~~yvcgptvy~~~HiGhar~~v~-~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl 99 (465)
T TIGR00435 21 KVKMYVCGPTVYDYCHIGHARTAIV-FDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDM 99 (465)
T ss_pred cceEEEecCccCCCcccccchHHHH-HHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3444444558889999999998665 999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccC-CCCCHHHHHHHHHHHHHHHHcCCEEece-EEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 362 EWFEIDFDYFG-RTSTPQQTEIVQHLFDRVHKAGFTSSAS-VEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 362 ~~lgi~~D~~~-~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
++|||++|.+. +++ .|.+.+++++.+|+++|++|+.+ ..++||+.|-. .||
T Consensus 100 ~~LgI~~d~~~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~-------------------------~yG 152 (465)
T TIGR00435 100 KALNVLPPDLEPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK-------------------------DYG 152 (465)
T ss_pred HHhCCCCCcCCcccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc-------------------------hhc
Confidence 99999999864 555 59999999999999999999998 99999998621 112
Q ss_pred Cccc--cccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC---CCchHHHHHHHHhhcCCCcEeeeccC
Q psy7266 440 QLIN--AIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ---WSSNARVICKAWLKDGLKPRCITRDL 514 (1175)
Q Consensus 440 ~~~~--~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~---~~~~~~~~~~~wl~~~l~dw~ISR~~ 514 (1175)
++.. ..++. .|..++ ... .++++.. |.... .+-..| +.
T Consensus 153 ~ls~~~~~~~~------~~~~~~----------~~~--------~K~~p~DF~Lwk~~~---------~~~~~w----~s 195 (465)
T TIGR00435 153 KLSKQDLDQLE------AGARVD----------VDE--------AKRNKLDFVLWKSSK---------EGEPKW----DS 195 (465)
T ss_pred cCCCCCHHHHh------cccccC----------ccc--------ccCCCCCceeeCCCC---------CCCCCC----cC
Confidence 1110 00000 000000 000 0011100 21100 111123 45
Q ss_pred CCCcccCCCCCCCce-EEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeec
Q psy7266 515 KWGIPVPLPGFENKY-SLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNY 593 (1175)
Q Consensus 515 ~WG~piP~~~~e~~v-vWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~ 593 (1175)
.||...|.|+-|+.+ .| ++.... .+ +|..|.|++++|+.+..++..+.. +.++++.++++|+|+.
T Consensus 196 pwG~grpgWhiecsam~~-------~~lg~~---~D---ih~gG~Dl~fpHhene~aqs~a~~-g~~~~~~~~h~g~v~~ 261 (465)
T TIGR00435 196 PWGKGRPGWHIECSAMND-------KYLGDQ---ID---IHGGGVDLIFPHHENEIAQSEAAF-GKQLAKYWMHNGFLMI 261 (465)
T ss_pred CCCCCCCCcHhHHHHHHH-------HhcCCC---ce---eeccccccccchHHHHHHHHHHhc-CCCCCcEEEEeeEEEe
Confidence 799999999865543 11 122211 11 899999999999999998877753 4677899999999999
Q ss_pred CCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy7266 594 EDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTI 673 (1175)
Q Consensus 594 ~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~ 673 (1175)
+|+|||||+||+|++.|+++. ||+|++|||+++ .++.++++|+++.+.+.. ..++.++|++.++..... ...
T Consensus 262 ~g~KMSKS~GN~i~~~dll~~-~~~dalR~~ll~-~~~~~~l~fs~~~l~~a~--~~~~rl~~~~~~~~~~~~----~~~ 333 (465)
T TIGR00435 262 DNEKMSKSLGNFFTVRDVLKN-YDPEILRYFLLS-VHYRSPLDFSEELLEAAK--NALERLYKALRVLDTTLA----YSG 333 (465)
T ss_pred cCccccccCCCcCCHHHHHHH-CCHHHHHHHHHh-CCCCCCCccCHHHHHHHH--HHHHHHHHHHHHHHhhhc----ccc
Confidence 999999999999999999996 999999999997 567899999999987653 346677777766533221 100
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Q psy7266 674 PEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCN 720 (1175)
Q Consensus 674 p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n 720 (1175)
.... + +......+...+.++| ++++++.|+..|+++++..|
T Consensus 334 ~~~~----~--~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n 375 (465)
T TIGR00435 334 NQSL----N--KFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSIN 375 (465)
T ss_pred cccc----c--cchhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh
Confidence 0000 0 0112234567788888 79999999999999999888
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=381.44 Aligned_cols=366 Identities=18% Similarity=0.210 Sum_probs=269.3
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCccc---------cccc-CCcchHHHHHHHHcCCCchhhH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLY---------VSGT-DEYGTATETKALEEGLTPRQIC 350 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~---------~~G~-D~~G~~ie~~a~~~g~~p~~~~ 350 (1175)
+++-++++.|+|..++||||+|+.+. .|+++||+|++||+|.| ++|+ |+||.+|+..|+++|++|.+++
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~-~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a 98 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIF-EDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEIS 98 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHH-HHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHH
Confidence 46788888999999999999997665 99999999999999999 7888 6678899999999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCC
Q psy7266 351 DKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDA 430 (1175)
Q Consensus 351 ~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~ 430 (1175)
++|.+.|.++++.|||.++.+.+|. ++|.+.++.++.+|+++|++|.....|+||+.+ | |+
T Consensus 99 ~~~~~~f~~d~~~Lni~~~~~~p~a-tehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~--~------------~~---- 159 (481)
T PRK14534 99 RFFTEAFFDDCKKLNIVYPDKVLVA-SEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC--F------------KS---- 159 (481)
T ss_pred HHHHHHHHHHHHHcCCCCCceecCc-cchHHHHHHHHHHHHHCCCEEEECCeEEEeccc--c------------cc----
Confidence 9999999999999999999988764 589999999999999999999999999999986 1 12
Q ss_pred CCCcccccCCccccccccC-CcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEe
Q psy7266 431 RGDQCDGCGQLINAIELIQ-PRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRC 509 (1175)
Q Consensus 431 ~G~~c~~~g~~~~~~el~~-~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ 509 (1175)
+|... |. ++.+ +.|..|. ++++. +..+.+....-+...++++..
T Consensus 160 YG~ls---~~-----~l~~l~~~~~~~------------v~~~~---------------~K~np~DFaLWK~~~~~~~~~ 204 (481)
T PRK14534 160 YGQMA---GI-----NLNDFKDMSVSR------------VEIDK---------------SKRNKSDFVLWFTNSKFKDQE 204 (481)
T ss_pred hhhhc---CC-----CHHHHhhhccCc------------CCccc---------------CCCCcccchhcCcCCcCCCCC
Confidence 22211 10 0111 1111111 01100 111112222111223567778
Q ss_pred eeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeec
Q psy7266 510 ITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATE 589 (1175)
Q Consensus 510 ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g 589 (1175)
++++..||...|.|+-|+.+ ..++.+|.. . .+|++|.|++++|+.+++|+..+.. +.+++++++++|
T Consensus 205 ~~w~spWG~GrPgWHiECsa-----m~~~~lg~~----~---DIH~GG~DliFPHHene~Aqs~a~~-g~~~~~~W~H~g 271 (481)
T PRK14534 205 MKWDSPWGFGYPSWHLECAA-----MNLEYFKST----L---DIHLGGVDHIGVHHINEIAIAECYL-NKKWCDMFVHGE 271 (481)
T ss_pred CeecCCCCCcCCcHHHHHHH-----HHHHHcCCc----c---eEEecccccCCCcchhHHHHHhhhc-CCCcceEEEEec
Confidence 89999999999998754433 012334432 1 2899999999999999999998864 678899999999
Q ss_pred eeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q psy7266 590 YLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNY 669 (1175)
Q Consensus 590 ~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~ 669 (1175)
||+++|+|||||+||+|++.|+++.+|+++++|||+++ +++.++++|+++.+.+..+ -++++.+.++++...+.. .
T Consensus 272 ~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~--~~~~~~~~~~~~~~~~~~-~ 347 (481)
T PRK14534 272 FLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLT-AHYRTQLKFTFNNLKACKI--ARENMLNKLTYFYSSLDQ-F 347 (481)
T ss_pred EEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHh-CCCCCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHhhhh-c
Confidence 99999999999999999999999878999999999887 7888999999999986532 234444544443322211 0
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Q psy7266 670 GSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQ 721 (1175)
Q Consensus 670 ~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~ 721 (1175)
++...... . +.........+...+.++| ++++++.|+..|+++++..|.
T Consensus 348 ~~~~~~~~--~-~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k~~n~ 397 (481)
T PRK14534 348 DLNLLNKD--L-ENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDDNL 397 (481)
T ss_pred cccccccc--c-ccchhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 10000000 0 0000011234556888899 799999999999999988775
|
|
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=364.31 Aligned_cols=349 Identities=15% Similarity=0.133 Sum_probs=252.2
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
+-++|+|.|.|| +++||||+|+++. .|+++||+|++||+|.|++|+|+||++|+..|+++|++|.++|++|++.|.+
T Consensus 9 ~v~~YvCGpTvY--~~~HIGh~r~~V~-~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~ 85 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLA-FDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRE 85 (384)
T ss_pred eeEEEecCCCCC--CCCccchhHHHHH-HHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 335666666655 9999999998655 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccc-cccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceE----EEeeeCCCCcccccceecccCCCccccCCCCCc
Q psy7266 360 VYEWFEI-DFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASV----EQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQ 434 (1175)
Q Consensus 360 ~~~~lgi-~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~----~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~ 434 (1175)
+++.||| ++|.+.||++ +.+.+++++++|.++|++|+... .|+|++.-- ..+|..
T Consensus 86 d~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~------------------~~YG~l 145 (384)
T PRK12418 86 DMEALRVLPPRDYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT------------------PQFGYE 145 (384)
T ss_pred HHHHhCCCCCCccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch------------------hhcccc
Confidence 9999997 8999999887 69999999999999999999988 798887731 022321
Q ss_pred ccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC---CCchHHHHHHHHhhcCCCcEeee
Q psy7266 435 CDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ---WSSNARVICKAWLKDGLKPRCIT 511 (1175)
Q Consensus 435 c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~---~~~~~~~~~~~wl~~~l~dw~IS 511 (1175)
. +.-+ .++....-.|+...-. .-++++.. |.. +. .+-.-|
T Consensus 146 s---~~~~--~~~~~~~~~~~~~~~~--------------------~~K~~p~DFaLWK~--------~~-~~~~~w--- 188 (384)
T PRK12418 146 S---GYDR--ATMLELFAERGGDPDR--------------------PGKRDPLDALLWRA--------AR-PGEPSW--- 188 (384)
T ss_pred c---CCCH--HHHHhhhcccccCccc--------------------ccCCCcccceeecc--------CC-CCCCcc---
Confidence 0 0000 0000000000000000 00011000 211 10 111224
Q ss_pred ccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee
Q psy7266 512 RDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL 591 (1175)
Q Consensus 512 R~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l 591 (1175)
+..||...|.|+-|+.+ .-.++.... .| +|..|.|++++|+-+..+...+.....++.+.++++|+|
T Consensus 189 -~spwG~GRPGWHiECsa------m~~~~lg~~---~D---IH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l 255 (384)
T PRK12418 189 -PSPFGPGRPGWHIECSA------IALNRLGSG---FD---IQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMI 255 (384)
T ss_pred -cCCCCCCCChhHHHHHH------HHHHHcCCC---cc---cccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEE
Confidence 56799999999755433 112233332 11 899999999999999988877653223677888888999
Q ss_pred ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7266 592 NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGS 671 (1175)
Q Consensus 592 ~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~ 671 (1175)
+.+|+|||||+||+|+|.++++.|++++++|||++ ..++.++++|+++.+.+..+ .++.+.|++.+. .
T Consensus 256 ~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~a~~--~l~r~~~~~~~~--------~- 323 (384)
T PRK12418 256 GLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALL-AGHYRADREWTDAVLAEAEA--RLARWRAAAALP--------A- 323 (384)
T ss_pred CCCCCcccCcCCCcCCHHHHHhccCChhheeEEEe-ccCCCCCcccCHHHHHHHHH--HHHHHHHHHhcc--------c-
Confidence 99999999999999999999876677779999998 58888999999999875422 233444433221 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 672 TIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 672 ~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
. . .+..+.+.+.++| ++++++.|+..|+++++..|.|+...+
T Consensus 324 ---~----~-------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 324 ---G----P-------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDDA 366 (384)
T ss_pred ---c----c-------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence 0 0 2234467888888 689999999999999999999987654
|
|
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=377.54 Aligned_cols=363 Identities=14% Similarity=0.114 Sum_probs=267.8
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
..++-++++.|+|.|.+||||+++.+. .|+++||+|++||+|.|++|+||||++|+..|++.|++|.+++++|.+.|.+
T Consensus 78 ~~~v~~Y~CGpTvYd~~HIGhaR~~V~-~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~ 156 (557)
T PLN02946 78 EGKVGMYVCGVTAYDLSHIGHARVYVT-FDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLS 156 (557)
T ss_pred CCceeEEEeCCccCCCCccccchhhHH-HHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455666677899999999999998665 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
+++.|||. +-+.+|...+|.+.+++++++|+++|++|.....|+||+.-- ..+|... +
T Consensus 157 d~~~LnI~-~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f------------------~~YG~Ls---~ 214 (557)
T PLN02946 157 DMAYLHCL-PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKF------------------PEYGKLS---G 214 (557)
T ss_pred HHHHCCCC-CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcc------------------hhhhhcC---C
Confidence 99999998 555666667899999999999999999999999999998831 0123221 0
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-C--CCchHHHHHHHHhhcCCCcEeeeccCCC
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-Q--WSSNARVICKAWLKDGLKPRCITRDLKW 516 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~wl~~~l~dw~ISR~~~W 516 (1175)
.-+ .++ +.|..++... -++++. + |.... .|-.-| +..|
T Consensus 215 ~~l--~~l------~~g~rv~~~~------------------~K~np~DFaLWK~~k---------~ge~~W----~SPW 255 (557)
T PLN02946 215 RKL--EDN------RAGERVAVDS------------------RKKNPADFALWKAAK---------EGEPFW----DSPW 255 (557)
T ss_pred CCh--hHh------hcCCCCCccc------------------ccCCccccceeccCC---------CCCCCc----cCCC
Confidence 000 000 0111111000 001110 0 32110 121224 5679
Q ss_pred CcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCC
Q psy7266 517 GIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDG 596 (1175)
Q Consensus 517 G~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~ 596 (1175)
|...|.|+-|+.+ .-.++.... .| +|..|.|++|.|+-...|...+.. +..+.+++++||||+++|+
T Consensus 256 G~GRPGWHIECSa------Ms~~~lG~~---~D---IH~GG~DL~FPHHENEiAQsea~~-g~~~a~yW~H~G~v~~~G~ 322 (557)
T PLN02946 256 GPGRPGWHIECSA------MSAAYLGHS---FD---IHGGGMDLVFPHHENEIAQSCAAC-CDSNISYWIHNGFVTVDSE 322 (557)
T ss_pred CCCCCcHHHHHHH------HHHHHcCCC---ee---EeccccccCCCcccchHHHHHHHh-CCCCCceeeEeeEEEeCCC
Confidence 9999999855443 112223222 11 899999999999999888877652 4566689999999999999
Q ss_pred cccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy7266 597 KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEI 676 (1175)
Q Consensus 597 KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~ 676 (1175)
|||||+||+|++.|+++. |++|++||||++ .++.++++|+++.+.... .-+..+.+++.|+...+.+.... ....
T Consensus 323 KMSKSlGN~itl~dll~~-y~~dalR~~lLs-~hyr~~l~fs~e~L~~a~--~~l~~l~~~~~~~~~~l~~~~~~-~~~~ 397 (557)
T PLN02946 323 KMSKSLGNFFTIRQVIDL-YHPLALRLFLLG-THYRSPINYSDVQLESAS--ERIFYIYQTLHDCEESLQQHDST-FEKD 397 (557)
T ss_pred CcCCcCCCcCCHHHHHHh-cCccceeeeeec-cCCCCCcEecHHHHHHHH--HHHHHHHHHHHHHHHHhhhhccc-cccc
Confidence 999999999999999996 999999999998 568899999999987652 33446677777776554322110 0000
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q psy7266 677 SPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQT 725 (1175)
Q Consensus 677 ~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~ 725 (1175)
. .+..+...+..+...+.++| ++|+++.|+..|+++++..|.++..
T Consensus 398 ~---~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~ 444 (557)
T PLN02946 398 S---VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHT 444 (557)
T ss_pred c---cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhh
Confidence 0 11112334556678899999 7999999999999999999999864
|
|
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=365.45 Aligned_cols=343 Identities=16% Similarity=0.150 Sum_probs=248.5
Q ss_pred CCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHH
Q psy7266 278 PNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIH 357 (1175)
Q Consensus 278 ~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~ 357 (1175)
++.-++|||.|.|| +.+||||+|+.+. .|+++||+|++||+|.|++|+|+||++|+..|+++|++|+++|+.|...|
T Consensus 34 ~~~v~~YvCGpTvY--~~~HIGhart~V~-~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f 110 (411)
T TIGR03447 34 GPEAGMYVCGITPY--DATHLGHAATYLT-FDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLF 110 (411)
T ss_pred CCcceEEEeCCccC--CCcccccchHHHH-HHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45667788888777 8999999998765 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccc-ccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceE----EEeeeCCCCcccccceecccCCCccccCCCC
Q psy7266 358 REVYEWFEID-FDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASV----EQLHCAQCDRFLADRFVEGVCPKCRYEDARG 432 (1175)
Q Consensus 358 ~~~~~~lgi~-~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~----~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G 432 (1175)
.++++.|||. +|.+.||++ |.+.+++++++|+++|+||.... .|+|++..- ..+|
T Consensus 111 ~~d~~~Lni~~~d~~~RaTe--~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~------------------~~YG 170 (411)
T TIGR03447 111 REDMEALRVLPPRDYIGAVE--SIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT------------------EQFG 170 (411)
T ss_pred HHHHHHcCCCCCCcccCCCC--CHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch------------------hccc
Confidence 9999999986 888889887 58999999999999999998876 688887730 1223
Q ss_pred CcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC-C--CCchHHHHHHHHhhcCCCcEe
Q psy7266 433 DQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD-Q--WSSNARVICKAWLKDGLKPRC 509 (1175)
Q Consensus 433 ~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~wl~~~l~dw~ 509 (1175)
... +.-+ .++....-.|+...-. .-++++. + |... +.+-.-|
T Consensus 171 ~Ls---~~~~--~~~~~~~~~~~~~~~~--------------------~~K~~p~DFaLWK~~---------~~~e~~w- 215 (411)
T TIGR03447 171 YES---GYDR--ATMLELFAERGGDPDR--------------------PGKRDPLDALLWRAA---------REGEPSW- 215 (411)
T ss_pred ccc---CCCH--HHHHhhhcccccCccc--------------------ccCCCCcccceeCCC---------CCCCCCc-
Confidence 211 0000 0000000000000000 0000100 0 2211 0111123
Q ss_pred eeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCc-ccCeEEEee
Q psy7266 510 ITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQY-TKVNHIMAT 588 (1175)
Q Consensus 510 ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~-~~p~~i~~~ 588 (1175)
+-.||...|.|+-|+.+ .-.++.... .| +|..|.|+++.|+.+..+...+.. +. ++++.++++
T Consensus 216 ---~spwG~GRPGWHiECsa------m~~~~lg~~---~D---ih~GG~DLifpHheneiaq~~A~~-g~~~~~~~w~H~ 279 (411)
T TIGR03447 216 ---DSPFGPGRPGWHIECSA------IATNRLGAG---FD---IQGGGSDLIFPHHEFSAAHAEAAT-GVRRMARHYVHA 279 (411)
T ss_pred ---cCCCCCCCChhHHHHHH------HHHHHcCCc---ee---cccCcccccccchHhHHHHHHHhc-CCCCcceEEEEC
Confidence 56799999999855433 112333332 11 799999999999999888777753 34 778999999
Q ss_pred ceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q psy7266 589 EYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKN 668 (1175)
Q Consensus 589 g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~ 668 (1175)
|+|+.+|+|||||+||+|++.++++.|+++|++|||+++ +++.++++|+++.+.+. ...++.+.+++.+.
T Consensus 280 g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls-~~Yr~pl~fs~e~l~~a--~~~l~rl~~~~~~~------- 349 (411)
T TIGR03447 280 GMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDAVLAEA--EARLARWRAALAAT------- 349 (411)
T ss_pred CEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEec-CCCCCCCccCHHHHHHH--HHHHHHHHHHHhhc-------
Confidence 999999999999999999999998877999999999984 78889999999998753 22333444433221
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Q psy7266 669 YGSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCN 720 (1175)
Q Consensus 669 ~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n 720 (1175)
. .+ .+..+...+.++| +++++..|+..|+++++..|
T Consensus 350 -~--~~-------------~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n 386 (411)
T TIGR03447 350 -D--AP-------------DATDLIARLRQHLANDLDTPAALAAVDNWAAAAL 386 (411)
T ss_pred -c--cc-------------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 0 00 1234456677888 78999999999999998765
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=362.48 Aligned_cols=349 Identities=15% Similarity=0.159 Sum_probs=256.1
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
..+++-++++.|+|.+++||||+|+.+. .|+++||+|++||+|.|++|+||||.+|...|++.|++|.+++++|.+.|.
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~-~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~ 323 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVV-FDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMH 323 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHH-HHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3567888888999999999999998765 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEece-EEEeeeCCCCcccccceecccCCCccccCCCCCcccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSAS-VEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~ 437 (1175)
++++.|||.++.+ +|...+|.+.++.++.+|+++|++|+.. ..|+||+.+-. .+|...
T Consensus 324 ~d~~~LnI~~p~~-~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~------------------~YG~LS-- 382 (699)
T PRK14535 324 EDADALGVLRPDI-EPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFA------------------AYGQLS-- 382 (699)
T ss_pred HHHHHcCCCCCcE-eeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccccc------------------cccccc--
Confidence 9999999999887 4444589999999999999999999874 48999998511 223221
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCC---CCCchHHHHHHHHhhcCCCcEeeeccC
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSD---QWSSNARVICKAWLKDGLKPRCITRDL 514 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~---~~~~~~~~~~~~wl~~~l~dw~ISR~~ 514 (1175)
|.-+ .++ +.|..++. .. .++++. -|.... .|-.-| +.
T Consensus 383 -~~~~--~~l------~~g~rve~----------d~--------~Krnp~DFaLWK~sk---------~Gep~W----~S 422 (699)
T PRK14535 383 -GKSL--DDL------RAGERVEV----------DG--------FKRDPLDFVLWKAAK---------AGEPAW----ES 422 (699)
T ss_pred -CCCh--HHh------cCCCcccc----------cc--------ccCCccccceeccCC---------CCCCCc----cC
Confidence 0000 011 11111110 00 011110 032210 121224 66
Q ss_pred CCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHh-CCC--------------c
Q psy7266 515 KWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAA-GDQ--------------Y 579 (1175)
Q Consensus 515 ~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~-~~~--------------~ 579 (1175)
.||-..|.|+-|+.+ .-.++.... .| +|..|.|+++.|+-.-.|...++ |.. .
T Consensus 423 PWG~GRPGWHIECSA------Ms~~~LG~~---~D---IHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~ 490 (699)
T PRK14535 423 PWGNGRPGWHIECSA------MSENLFGDT---FD---IHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIA 490 (699)
T ss_pred CCCCCCCchHHHHHH------HHHHHcCCc---ce---eECCccccCCCCCccHHHHHHHhhCCCccccccccccccccc
Confidence 799999999755433 122333332 11 89999999999999888877664 210 0
Q ss_pred ccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHH
Q psy7266 580 TKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFIN 659 (1175)
Q Consensus 580 ~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~ 659 (1175)
++.++++++|||+++|+|||||+||+|++.++++. ||+|++|||+++ +++.++++|+++.+.+. ...++.+.+++.
T Consensus 491 ~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~-ygpdalRl~lLs-shYRspL~fS~e~Le~A--k~~l~Rl~~~l~ 566 (699)
T PRK14535 491 SHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQ-YDPEVVRFFILR-AHYRSPLNYSDAHLDDA--KGALTRLYTTLK 566 (699)
T ss_pred ccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHh-CCHHHHHHHHHc-CCCCCCCCcCHHHHHHH--HHHHHHHHHHHH
Confidence 25689999999999999999999999999999996 999999999998 67889999999988753 222334444333
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHH
Q psy7266 660 RALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQY 722 (1175)
Q Consensus 660 r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~y 722 (1175)
++. .. . . .+...+..+...+.++| ++++++.|+..|+++++..|.+
T Consensus 567 ~~~-------~~-~--~-------~~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~iN~~ 613 (699)
T PRK14535 567 NTP-------AA-E--F-------MLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKT 613 (699)
T ss_pred hhh-------hc-c--c-------hhhhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHH
Confidence 321 00 0 0 01123445667888999 7999999999999999988865
|
|
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=355.53 Aligned_cols=480 Identities=17% Similarity=0.214 Sum_probs=297.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------CCChH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS---------KFDTK 71 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---------p~~~~ 71 (1175)
|+||+.+.++ +.+++++|.+.|++|+.+. .+|.|+||+|+.+||..|+||.||++||. |.++.
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~-------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~d~~ 74 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP-------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAF 74 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee-------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCCCHH
Confidence 5899988775 6789999999999999865 36899999998889999999999999986 45677
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCc
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLL 150 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~ 150 (1175)
+++++++|+.|..... ....+...|+.||.+|+ ++||+|+++|+|||++|+.+..+..........
T Consensus 75 erAqV~qWL~~~~~~~-------------~~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~~~~~~~ 141 (722)
T PLN02907 75 ESSQVDEWLDYAPTFS-------------SGSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKS 141 (722)
T ss_pred HHHHHHHHHHHHhhcc-------------cHHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhhhccccc
Confidence 8999999999876422 11356788999999999 999999999999999999986642111111235
Q ss_pred ccchhHHHHHHHHhcCHH--HHHHHHHHHHHhcccccccCchhhhhhhhhhhhhcCcccccccccccccccccccCCCcc
Q psy7266 151 SSYTNITPWYDRISKLPQ--VQKALKTWTEVLKGSANDVGSLSEALFSLSIASQSGNTVLNSLNKLAPLCKKSNKQQPES 228 (1175)
Q Consensus 151 ~~~p~L~~W~~rl~~~P~--~~~~l~~~~~~~kg~~~~~~~~~~~~~k~~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 228 (1175)
..||||.+|+++|.++|. |+.++..+....+ +. .|....++... ..
T Consensus 142 ~~yPnL~RW~erI~arPs~~~~~~~~a~~~~~~---------------------~~----------~~~~~~~~~~~-~~ 189 (722)
T PLN02907 142 KKYQNLVRWFNSISAEYSDILNEVTAAYVGKRG---------------------AG----------KPAAAKSKEKV-AD 189 (722)
T ss_pred ccCHHHHHHHHHHHhCCCcchhhHHHHHHHhhc---------------------cc----------cccccchhhhc-cc
Confidence 789999999999999999 6766666621111 00 00000000000 00
Q ss_pred ccCCCccccccccccCCCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHh
Q psy7266 229 KAKPAAVVEDDLSSKSKDVTSEEIEQTKVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSA 308 (1175)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~iE~~~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~ 308 (1175)
+ .... . ....+.+...+|.. ...-++|..+|.|||+|||||++++++ +
T Consensus 190 ~-~~~~-~----------------------------~~~~~~~~~~L~~~-~~~~v~tRFaPsPtG~LHiG~ar~al~-n 237 (722)
T PLN02907 190 A-GKAD-G----------------------------AKDKGSFEVDLPGA-EEGKVCTRFPPEPSGYLHIGHAKAALL-N 237 (722)
T ss_pred c-ccch-h----------------------------ccccccccccCccC-CCCceEEeeCCCCCCcccHHHHHHHHH-H
Confidence 0 0000 0 00011112234432 233489999999999999999999887 9
Q ss_pred HHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHH
Q psy7266 309 DVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFD 388 (1175)
Q Consensus 309 D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~ 388 (1175)
..+||.+ .|. |+.-+ ++++|.....+|.+.|.++++|||+.+|..+++++ |.+..++...
T Consensus 238 ~~~Ar~~--~G~---~iLR~-------------eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~--r~~~y~~~a~ 297 (722)
T PLN02907 238 QYFARRY--KGK---LIVRF-------------DDTNPSKESDEFVENILKDIETLGIKYDAVTYTSD--YFPQLMEMAE 297 (722)
T ss_pred HHHHHHh--CCE---EEEEe-------------cCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccc--cHHHHHHHHH
Confidence 9999843 333 33333 45788888899999999999999999997767765 9999999999
Q ss_pred HHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeeccccc
Q psy7266 389 RVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLF 468 (1175)
Q Consensus 389 ~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwf 468 (1175)
+|+++|++|... |+.. ++... + ..|.-| .| |.- +++.
T Consensus 298 ~Li~~G~aY~~~-----~~~~-------~~~~~-~------~~~~~~---------------~~-R~~-~~ee------- 334 (722)
T PLN02907 298 KLIKEGKAYVDD-----TPRE-------QMRKE-R------MDGIES---------------KC-RNN-SVEE------- 334 (722)
T ss_pred HHHHcCCeeecC-----CCHH-------HHHHH-H------hcCCCC---------------Cc-cCC-CHHH-------
Confidence 999999999621 2110 11000 0 001000 01 100 0000
Q ss_pred ccchhHHHHHHHHHHhcCCCCCchHHHHHH-HHhhcCCCcEeeeccCCCCcccCCCCCCCce-EEecCccccccCCCCCC
Q psy7266 469 LELPKIEDKLQSWVSETSDQWSSNARVICK-AWLKDGLKPRCITRDLKWGIPVPLPGFENKY-SLSSSPSLVQFLPTATP 546 (1175)
Q Consensus 469 l~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~wl~~~l~dw~ISR~~~WG~piP~~~~e~~v-vWfds~~~~~~wp~~~~ 546 (1175)
++..|.+ ...........-.|..+. ..-...++||.+-|... .+-|-.+ +++ +|.. | -+-....
T Consensus 335 -~~~~~~~----m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~--~~h~~~g--d~~~~~Pt---Y--~fa~~vd 400 (722)
T PLN02907 335 -NLRLWKE----MIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNP--TPHHRIG--SKYKVYPT---Y--DFACPFV 400 (722)
T ss_pred -HHHHHHH----HhcccccCCCeEEEEEcccCCCCCCcccCEEEEecC--CcccccC--Cccceeec---c--CCceEEE
Confidence 0000000 000000000111110000 00012578898888753 2222111 111 1110 0 0111000
Q ss_pred CCcceEEEEe-eccccc---hhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCcccccC-------CCc--------cC
Q psy7266 547 QSKITLYQFM-AKDNVP---FHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSR-------GTG--------VF 607 (1175)
Q Consensus 547 ~~~v~~~~~~-GkD~i~---fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~-------GN~--------v~ 607 (1175)
+....+.|++ |.|++. .|.. ++.++| +..| ++...++++.+|.||||++ |-+ .+
T Consensus 401 D~~~gIThvlRg~e~~~~t~~q~~----l~~~lg--~~~p-~~~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt 473 (722)
T PLN02907 401 DALEGVTHALRSSEYHDRNAQYYR----ILEDMG--LRKV-HIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPT 473 (722)
T ss_pred cccCCCceEeecHhhhhChHHHHH----HHHHcC--CCCC-eeEEEEEEcCCCccccccchHhHhhcCcccCCCCCCccc
Confidence 1222334555 777653 3333 334444 5555 6677778999999999999 422 13
Q ss_pred chhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHH
Q psy7266 608 GNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSEL 650 (1175)
Q Consensus 608 ~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l 650 (1175)
...+.++||.++++|-|+...+....+..|+|+.+.. .|++.
T Consensus 474 ~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~-~nr~~ 515 (722)
T PLN02907 474 VQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWT-INKKI 515 (722)
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHH-HHHHH
Confidence 4578888999999999999988888899999998864 34443
|
|
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=320.42 Aligned_cols=355 Identities=18% Similarity=0.216 Sum_probs=260.5
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
..++-+..+.|+|..++||||+|+.+. -|++.||++.+||.|.|+..+.|...+|...|.+.|.+..++++.|.+.|.+
T Consensus 20 ~~~V~mYvCGpTVYd~~HIGhaRt~V~-fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~ 98 (464)
T COG0215 20 PGKVKMYVCGPTVYDYAHIGHARTYVV-FDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFE 98 (464)
T ss_pred CCeEEEEecCCccCCccccccCcceeh-HHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 344888888999999999999998776 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccc-cccccCCCCCHHHHHHHHHHHHHHHHcCCEEec-eEEEeeeCCCCcccccceecccCCCccccCCCCCcccc
Q psy7266 360 VYEWFEI-DFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSA-SVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 360 ~~~~lgi-~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~ 437 (1175)
+++.||| ..|...+.++ |...+.++.++|.++|++|.. ...|+|++..=. .+|...
T Consensus 99 D~~aL~v~~p~~~PraTe--~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~------------------~YG~LS-- 156 (464)
T COG0215 99 DMDALNVLPPDIEPRATE--HIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK------------------DYGKLS-- 156 (464)
T ss_pred HHHHhCCCCCcccCcHhh--CHHHHHHHHHHHHHCCceEEecCCcEEEecccch------------------hhHhhc--
Confidence 9999999 5687777664 999999999999999999998 678999887411 122110
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCC
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWG 517 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG 517 (1175)
|+. .-.++. ...|.+.... +..+.=|+ -|... +.|-..| +..||
T Consensus 157 -~~~-~le~l~--~gar~~~~~~-Krnp~DFv------------------LWK~s---------k~gEp~W----~SPWG 200 (464)
T COG0215 157 -GRD-SLEELQ--AGARVEVDEE-KRNPLDFV------------------LWKAA---------KPGEPSW----DSPWG 200 (464)
T ss_pred -CCC-ChhHHh--hccccccccc-cCCchhhe------------------eeccC---------CCCCCCC----CCCCC
Confidence 000 000000 0001100000 00000000 02210 1233334 67899
Q ss_pred cccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCc
Q psy7266 518 IPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGK 597 (1175)
Q Consensus 518 ~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~K 597 (1175)
-..|.|+-|+.+ .-.++.... .| +|-.|.|.++.|+-.-.|...+.....++.++++++|||+++|+|
T Consensus 201 ~GRPGWHIECSa------M~~~~LG~~---~D---IHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geK 268 (464)
T COG0215 201 KGRPGWHIECSA------MSTKYLGET---FD---IHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEK 268 (464)
T ss_pred CCCCchhHHHHH------HHHHHhCCC---cc---eecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcC
Confidence 999999866544 111222221 11 899999999999999989888876335668999999999999999
Q ss_pred ccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy7266 598 FSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEIS 677 (1175)
Q Consensus 598 MSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~ 677 (1175)
||||+||+|+..|++++ |++.++||+|++ +.+.++++||++.+.+..+ .+..+.|++.++..... . ..
T Consensus 269 MSKSLGNfiti~d~l~~-~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~--~l~rl~~~~~~~~~~~~----~----~~ 336 (464)
T COG0215 269 MSKSLGNFITVRDLLKK-YDPEVLRLFLLS-SHYRSPLDFSEELLEEAKK--ALERLYNALRRLRDLAG----D----AE 336 (464)
T ss_pred cccccCCeeEHHHHHhh-cCHHHHHHHHHH-HHhCCccccCHHHHHHHHH--HHHHHHHHHHHHHhhcc----c----cc
Confidence 99999999999999996 999999999998 7888999999999876432 34455555554432111 0 00
Q ss_pred CChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q psy7266 678 PIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQT 725 (1175)
Q Consensus 678 ~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~ 725 (1175)
.. .+......+.++| ++|++..|+..|+++++..|..++.
T Consensus 337 ~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~ 377 (464)
T COG0215 337 LA--------DLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEE 377 (464)
T ss_pred cc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhc
Confidence 00 3445666788888 7999999999999999887765543
|
|
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=336.86 Aligned_cols=334 Identities=15% Similarity=0.146 Sum_probs=246.6
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
.+++++|+.+.|||||++||||+|++++ +|+++|++|+.||+|.++.|+||+|+++...+...+..++++++.+.+.|+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~ii-gD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~ 187 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVI-GDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIK 187 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHH-HHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999887 999999999999999999999999999999988888888999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEE-eceEEEeeeCCCCcccccceecccCCCccccCCCCCcccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTS-SASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy-~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~ 437 (1175)
++|++|||++|.|.++++..|...+++++..|.++|++| +.+..++++ ++.+ |+
T Consensus 188 ~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~--~~~~-------------------~~---- 242 (507)
T PRK01611 188 EDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVR--LTEF-------------------GD---- 242 (507)
T ss_pred HHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEE--chhh-------------------CC----
Confidence 999999999998888887778889999999999999999 654444333 2111 10
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCC
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWG 517 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG 517 (1175)
..+.+.+.+ ++.+....+.+.....+ +.|
T Consensus 243 ------------------~~~~vl~ks---------------------dG~~~Y~t~Dia~~~~k-------~~~----- 271 (507)
T PRK01611 243 ------------------DKDRVLIKS---------------------DGTYTYFTRDIAYHLYK-------FER----- 271 (507)
T ss_pred ------------------CCCeEEEEC---------------------CCCccchHHHHHHHHHH-------Hhh-----
Confidence 001111111 11122233333222211 111
Q ss_pred cccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccc-hhHhHHHHHHHHhCCCcccCe-EEEee---ceee
Q psy7266 518 IPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVP-FHSIMFPATLVAAGDQYTKVN-HIMAT---EYLN 592 (1175)
Q Consensus 518 ~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~-fh~~~~pa~l~~~~~~~~~p~-~i~~~---g~l~ 592 (1175)
+ + .++++.|.||.. |..++ +.+..+| +.++. .++.| |++.
T Consensus 272 ---~----------------------d------~~i~V~g~~q~~hf~~~~--~~~~~lg--~~~~~~~~~~h~~~glv~ 316 (507)
T PRK01611 272 ---F----------------------D------RVIYVVGADHHGHFKRLK--AALKALG--YDPDALEVLLHQMVGLVR 316 (507)
T ss_pred ---c----------------------C------EEEEEECCChHHHHHHHH--HHHHHcC--CCcccceEEEEEEEEeeE
Confidence 0 0 247888988763 33333 4455555 33332 33444 6664
Q ss_pred -cCCCcccccCCCccCchhhhhcCCCc----------------hhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHH
Q psy7266 593 -YEDGKFSKSRGTGVFGNNAKDTGLPA----------------DIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLG 655 (1175)
Q Consensus 593 -~~G~KMSKS~GN~v~~~d~i~~~~ga----------------DalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~ 655 (1175)
.+|+|||||+||+|+++|+++..+|+ |++||++++. ..++|++|+|+.+.+..++... .+.
T Consensus 317 ~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~-~~~~~~~Fd~~~~~~~~~~~~~-yvq 394 (507)
T PRK01611 317 GGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSR-SRDKDLDFDLDLALSFEGNNPP-YVQ 394 (507)
T ss_pred CCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhc-CCCCCCccCHHHHHhhcCCCcH-HHH
Confidence 57889999999999999999965888 9999999986 5678999999998654332222 233
Q ss_pred HHHHHHHHHHHHhcC-CCCCC-CCC-ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Q psy7266 656 NFINRALSFIEKNYG-STIPE-ISP-IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQ 726 (1175)
Q Consensus 656 n~~~r~~~~~~~~~~-~~~p~-~~~-~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~ 726 (1175)
....|+.+++.+... +..+. ..+ ++.|+||+..+..+...+.+++++++++.+++++++|++.+|.|++.+
T Consensus 395 Ya~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~ 468 (507)
T PRK01611 395 YAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRV 468 (507)
T ss_pred HHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 333488888766421 11111 113 678999999999999999999999999999999999998888888765
|
|
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=290.85 Aligned_cols=194 Identities=20% Similarity=0.175 Sum_probs=162.3
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
++.++|+|.|.|| |.+||||+++.++ +|+++||+|++|++|+|++|+|+||+||+..|++.|++|.++++++.+.|+
T Consensus 19 ~~~~~y~~gpt~y--~~~HiGH~r~~v~-~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~ 95 (213)
T cd00672 19 GLVTMYVCGPTVY--DYAHIGHARTYVV-FDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFF 95 (213)
T ss_pred CCceEEEeCCccC--CCcccccchhHHH-HHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4556777777666 7899999998766 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccc-cccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccc
Q psy7266 359 EVYEWFEIDF-DYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 359 ~~~~~lgi~~-D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~ 437 (1175)
++++.|||++ |.|.|| |
T Consensus 96 ~~~~~l~i~~~d~~~rt------------------------------W-------------------------------- 113 (213)
T cd00672 96 EDMKALNVLPPDVVPRV------------------------------W-------------------------------- 113 (213)
T ss_pred HHHHHcCCCCCCcceee------------------------------h--------------------------------
Confidence 9999999999 888888 2
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCC
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWG 517 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG 517 (1175)
++.++.+ ...++.
T Consensus 114 ------------------------------h~ec~am----------------------~~~~lg--------------- 126 (213)
T cd00672 114 ------------------------------HIECSAM----------------------AMKYLG--------------- 126 (213)
T ss_pred ------------------------------hHHHHHH----------------------HHHHcC---------------
Confidence 1211111 112231
Q ss_pred cccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCc
Q psy7266 518 IPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGK 597 (1175)
Q Consensus 518 ~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~K 597 (1175)
-|.| +|..|.|++++|..+..++..+.. +.++++.+++.|+|+.+|+|
T Consensus 127 -----------------------~~~d--------ih~~G~Dl~fpH~~~~~a~~~a~~-g~~~~~~~~h~~~v~~~g~K 174 (213)
T cd00672 127 -----------------------ETFD--------IHGGGVDLIFPHHENEIAQSEAAT-GKPFARYWLHTGHLTIDGEK 174 (213)
T ss_pred -----------------------CCcc--------EEeecCCCCcChHHHHHHHHHHHh-CCCCCcEEEEEEEEeccCcc
Confidence 1233 899999999999999988776643 33667888888999999999
Q ss_pred ccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCcccc
Q psy7266 598 FSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFS 638 (1175)
Q Consensus 598 MSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~ 638 (1175)
||||+||+|++.|+++. ||+|++|||+++.. +.++++|+
T Consensus 175 MSKs~Gn~v~~~dll~~-~~~da~R~~~l~~~-~~~~l~f~ 213 (213)
T cd00672 175 MSKSLGNFITVRDALKK-YDPEVLRLALLSSH-YRSPLDFS 213 (213)
T ss_pred hhhcCCCccCHHHHHHH-cCHHHHHHHHHhCC-cCCCCCCC
Confidence 99999999999999995 99999999999844 66788885
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=292.78 Aligned_cols=272 Identities=16% Similarity=0.267 Sum_probs=190.4
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCc------------------chHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEY------------------GTATETKALE 341 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~------------------G~~ie~~a~~ 341 (1175)
+.+++|+++++ |||.+||||+++.+. +|+++||+|++|++|.|++|+|+| |.|+...++.
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~-~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p 95 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVIT-ADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDP 95 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHH-HHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhh
Confidence 35699999995 999999999998655 999999999999999999999999 8888888999
Q ss_pred cCCCchhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceeccc
Q psy7266 342 EGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGV 421 (1175)
Q Consensus 342 ~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~ 421 (1175)
.|+.+ +++++|.+.|++.|+.|||++|++++|....+..+.+.++..|.+++.|..--.+. .+.-+.+.|.
T Consensus 96 ~g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~-----~~~~~~~~~~--- 166 (353)
T cd00674 96 FGCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMAILNEY-----RGRELQETWY--- 166 (353)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHh-----cCCccCCCce---
Confidence 99887 99999999999999999999998888888888899999999999999985321110 0000111111
Q ss_pred CCCccccCCCCCcccccCCccccc---c---c-cCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHH
Q psy7266 422 CPKCRYEDARGDQCDGCGQLINAI---E---L-IQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNAR 494 (1175)
Q Consensus 422 cP~c~~~d~~G~~c~~~g~~~~~~---e---l-~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~ 494 (1175)
.+-..|++||++..+. + - +...| .||+.-+.-... .
T Consensus 167 --------P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c-~cG~~g~~~~~~-------------------g--------- 209 (353)
T cd00674 167 --------PFMPYCEKCGKDTTTVEAYDAKAGTVTYKC-ECGHEETVDIRT-------------------G--------- 209 (353)
T ss_pred --------eeeeecCCcCcceeEEEEEeCCCCeEEEEc-CCCCEEEEeecC-------------------C---------
Confidence 1223456666432111 0 0 11244 366544422110 0
Q ss_pred HHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccch---hHhHHHHH
Q psy7266 495 VICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPF---HSIMFPAT 571 (1175)
Q Consensus 495 ~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~f---h~~~~pa~ 571 (1175)
++ .+.|-+..|.- |+-.+ |. +-+.|+||... +.... .+
T Consensus 210 --------~~--------KL~Wr~dW~~r----------------W~~l~-----Vd-~E~~GkDh~~~ggs~~~~~-~i 250 (353)
T cd00674 210 --------RG--------KLTWRVDWPMR----------------WAILG-----VD-FEPFGKDHASAGGSYDTGK-EI 250 (353)
T ss_pred --------Cc--------ccCCCCCchhh----------------hhhcC-----CC-EEeeCccccccccHHHHHH-HH
Confidence 00 12333333321 22111 21 66889999744 33322 22
Q ss_pred HH-HhCCCcccCeEEEeeceeecCCC-cccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHH
Q psy7266 572 LV-AAGDQYTKVNHIMATEYLNYEDG-KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDL 642 (1175)
Q Consensus 572 l~-~~~~~~~~p~~i~~~g~l~~~G~-KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~ 642 (1175)
+. .+ +..+|.+ ++||||+.+|+ |||||+||+|+|.|+++. +++|++|||+++......|++|+++..
T Consensus 251 ~~~il--g~~~P~~-~~ye~V~l~gg~KMSKSkGnvI~~~dll~~-~~~dalR~~~l~~~~~~~~i~Fd~~~~ 319 (353)
T cd00674 251 AREIF--GGEPPVP-VMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLRYLYARRKNPEKHIGFDLDIL 319 (353)
T ss_pred HHHHh--CCCCCeE-EEeeeEEeCCCCccCCCCCCcCCHHHHHHH-hChHHHHHHHHhCCCCCCCCCcChhHH
Confidence 22 33 3456644 77899988776 999999999999999997 999999999998664678999998643
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=284.77 Aligned_cols=286 Identities=20% Similarity=0.224 Sum_probs=196.3
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
..+++-+.++.|+|...+||||+|+.++ .|++.||++..||+|.+++++.|...+|..+|++.|+++.++++.|.+.|.
T Consensus 5 ~~~~v~~Y~CGPTVYd~~HiGhaR~~v~-~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~ 83 (300)
T PF01406_consen 5 NPGKVRMYVCGPTVYDYAHIGHARTYVF-FDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFF 83 (300)
T ss_dssp CTTEEEEEEEEEBTTS--BHHHHHHHHH-HHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCCCCCCCcceeeeee-HHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 4567888888899999999999998776 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccc-cccCCCCCHHHHHHHHHHHHHHHHcCCEEece-EEEeeeCCCCcccccceecccCCCccccCCCCCccc
Q psy7266 359 EVYEWFEIDF-DYFGRTSTPQQTEIVQHLFDRVHKAGFTSSAS-VEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCD 436 (1175)
Q Consensus 359 ~~~~~lgi~~-D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~ 436 (1175)
+++++|||.. |.+.+.+ +|.+.+.++.++|+++|++|... ..|+|++.. + ..+|....
T Consensus 84 ~dm~~Lnv~~p~~~prat--e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~--~----------------~~YG~Ls~ 143 (300)
T PF01406_consen 84 EDMKALNVLPPDHYPRAT--EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK--F----------------PDYGKLSN 143 (300)
T ss_dssp HHHHHTT----SEEEEGG--GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG--S----------------TTTTTTTT
T ss_pred HHHHHcCCCCCccccchh--ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc--c----------------cccccccc
Confidence 9999999976 5555655 49999999999999999999999 999998772 0 12222110
Q ss_pred ccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHH---HhcCCC---CCchHHHHHHHHhhcCCCcEee
Q psy7266 437 GCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWV---SETSDQ---WSSNARVICKAWLKDGLKPRCI 510 (1175)
Q Consensus 437 ~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~---~~~~~~---~~~~~~~~~~~wl~~~l~dw~I 510 (1175)
.+++++........ ++++.. |.... .+- +
T Consensus 144 --------------------------------~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~---------~~e----~ 178 (300)
T PF01406_consen 144 --------------------------------QDLEDLEAGARVEVDYEKRNPRDFALWKAAK---------PGE----P 178 (300)
T ss_dssp ---------------------------------SHHHHHHCHHHTT-TTSSSTT-EEEEEE-----------TTS-----
T ss_pred --------------------------------cchhhHHhhhhcccccccCCCcceeeeeccc---------ccC----C
Confidence 11111111110000 001000 21100 111 2
Q ss_pred eccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeece
Q psy7266 511 TRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEY 590 (1175)
Q Consensus 511 SR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~ 590 (1175)
+-+-.||-..|.|+-|+.+ .-.++.... .| +|..|.|+++.|+-...|...+.. +.++.++++++|+
T Consensus 179 ~w~spwG~GRPGWHiECsa------m~~~~lG~~---~D---IH~GG~DL~FPHHENEiAqs~a~~-g~~~a~~W~H~g~ 245 (300)
T PF01406_consen 179 SWDSPWGKGRPGWHIECSA------MSMKYLGDT---FD---IHGGGIDLIFPHHENEIAQSEAAT-GKPFANYWMHNGH 245 (300)
T ss_dssp -B--TTSSEEE-HHHHHHH------HHHHHHTTS---EE---EEEEEGGGTTTHHHHHHHHHHHHH-SS-SEEEEEEE--
T ss_pred cccCCCccCcCceeeehHH------HHHHHcCCC---ce---EEccccccCCCCccchHHHHHHhh-CchHHHHHHHHHH
Confidence 2256799999988643322 111222221 11 899999999999999988887764 3677899999999
Q ss_pred eecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHH
Q psy7266 591 LNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATK 645 (1175)
Q Consensus 591 l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~ 645 (1175)
|+++|+|||||+||+|++.|+++. |+++++||+|++ ..+.++++|+++.+.+.
T Consensus 246 l~~~g~KMSKSlgN~~~i~dll~~-~~~~~lR~~~l~-~hYr~~l~~s~~~l~~A 298 (300)
T PF01406_consen 246 LNVDGEKMSKSLGNFITIRDLLKK-YSPDALRLFLLS-THYRKPLNFSEENLEEA 298 (300)
T ss_dssp EEETTCE--TTTT---BHHHHHTT-S-HHHHHHHHHT-S-TTS-EEE-HHHHHHH
T ss_pred HhhcCccccccCCCEEEHHHHhhc-CCHHHHHHHHhc-CCCCCccccCHHHHHHh
Confidence 999999999999999999999985 999999999998 78889999999998753
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=304.62 Aligned_cols=366 Identities=14% Similarity=0.162 Sum_probs=258.6
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH---HcCC--------Cc--
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL---EEGL--------TP-- 346 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~---~~g~--------~p-- 346 (1175)
+++++|..+.|||+|++||||+|++++ +|+++|++++.||+|.-...+.|+|..+-..+. ..+. .|
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~~~-gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~ 189 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNAII-GDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDH 189 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHHHH-HHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChH
Confidence 568999999999999999999999888 999999999999999988888888876654432 1110 00
Q ss_pred -----------------------------------------hhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHH
Q psy7266 347 -----------------------------------------RQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQH 385 (1175)
Q Consensus 347 -----------------------------------------~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~ 385 (1175)
+.+++...+.|+++|++|||.||.|..-.+..+...+..
T Consensus 190 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~ 269 (566)
T TIGR00456 190 GLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPK 269 (566)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHH
Confidence 112233446788999999999998765444457778899
Q ss_pred HHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecc
Q psy7266 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSST 465 (1175)
Q Consensus 386 ~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~ 465 (1175)
++..|.++|++|.+ ..++.+.. .+|+. + .+.+.+
T Consensus 270 v~~~L~~~g~~~~~-Ga~~~~~~---------------------~~~d~---------------~------~~~vl~--- 303 (566)
T TIGR00456 270 VLEDLKEKGLVVED-GALWLDLT---------------------LFGDK---------------D------KDRVLQ--- 303 (566)
T ss_pred HHHHHHHCCCEEEc-CCEEEEcc---------------------cccCC---------------C------CCeEEE---
Confidence 99999999999966 44433211 11100 0 011111
Q ss_pred cccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCC
Q psy7266 466 QLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTAT 545 (1175)
Q Consensus 466 qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~ 545 (1175)
++++.+..-.+.+.....+ +.| ..|
T Consensus 304 ------------------ksDGt~~Y~t~DiA~~~~k-------~~~-----------------------------~~d- 328 (566)
T TIGR00456 304 ------------------KSDGTYLYLTRDIAYHLDK-------LER-----------------------------GFD- 328 (566)
T ss_pred ------------------ECCCCceechhhHHHHHHH-------Hhc-----------------------------CCC-
Confidence 1112244444444333322 001 011
Q ss_pred CCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCcccccCCCccCch----------------
Q psy7266 546 PQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGN---------------- 609 (1175)
Q Consensus 546 ~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~---------------- 609 (1175)
.++++.|.||...-..++ ++++++| +++|..+.+|+|.++.|.|||||+||+|+++
T Consensus 329 -----~iI~V~g~~q~~h~~~v~-~~l~~lG--~~~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~ 400 (566)
T TIGR00456 329 -----KMIYVWGSDHHLHIAQFF-AILEKLG--FYKKKELIHLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVITI 400 (566)
T ss_pred -----EEEEEecCcHHHHHHHHH-HHHHHcC--CCCCCceEEEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHHh
Confidence 358899999864333333 5667775 4578899999999889999999999999998
Q ss_pred -------hhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----CC
Q psy7266 610 -------NAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE-----IS 677 (1175)
Q Consensus 610 -------d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~-----~~ 677 (1175)
++++. +|.|++|||+++.. ...|.+|+|+.+.+ .|.++.+.++|.+.|+.+++.+...+.++. ..
T Consensus 401 ~~~~~~~~~~~~-vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~-~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~ 477 (566)
T TIGR00456 401 KNDLEEEDVADA-VGIGAVRYFDLSQN-RETHYVFDWDAMLS-FEGNTAPYIQYAHARICSILRKADIDGEKLIADDFSL 477 (566)
T ss_pred cCCccHHHHHHH-hcccceeeHHhhcC-CCCCceecHHHHhc-cCCCCchhHHHHHHHHHHHHHhcccccccccccccCC
Confidence 55554 88999999999977 57899999998776 478889999999999999998764332221 12
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHH
Q psy7266 678 PIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLS 757 (1175)
Q Consensus 678 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~ 757 (1175)
.++.+..++..+..+...+.+++++++++.+++.+++++..+|.|++.+ |++..+++.....+-.++..+..+|...+
T Consensus 478 ~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~--~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL 555 (566)
T TIGR00456 478 LEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKAC--PVLDAENENLAAARLALLKATRQTLKNGL 555 (566)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcC--ccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2566788999999999999999999999999999999999999999987 45543322111111222333445555555
Q ss_pred HHc
Q psy7266 758 LLL 760 (1175)
Q Consensus 758 ~lL 760 (1175)
.||
T Consensus 556 ~lL 558 (566)
T TIGR00456 556 QLL 558 (566)
T ss_pred Hhc
Confidence 544
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >KOG2007|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=274.15 Aligned_cols=367 Identities=18% Similarity=0.147 Sum_probs=268.6
Q ss_pred CCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHH-HcCCCcccccccCCcchHHHHHHH--HcCCCchhhHH
Q psy7266 275 LPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCR-LVNRNTLYVSGTDEYGTATETKAL--EEGLTPRQICD 351 (1175)
Q Consensus 275 ~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r-~~G~~v~~~~G~D~~G~~ie~~a~--~~g~~p~~~~~ 351 (1175)
.|. +.+++-.++..|+|...-|||||++++ +-|++.||++ .-||+|.|++++.+...+|...|+ ..+..|..+.+
T Consensus 49 ip~-~~~~v~wY~CGpTvYD~SHmGHArsYV-sfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~ 126 (586)
T KOG2007|consen 49 IPN-NGNKVTWYICGPTVYDSSHMGHARSYV-SFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSE 126 (586)
T ss_pred eeC-CCCeEEEEEecCcccchhhhhhhhhhh-hHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHH
Confidence 344 445588888899999999999999766 5999999999 779999999999999999999997 23444433333
Q ss_pred ---HHHHHHHHHHhhcccc-ccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccc
Q psy7266 352 ---KYFAIHREVYEWFEID-FDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRY 427 (1175)
Q Consensus 352 ---~~~~~~~~~~~~lgi~-~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~ 427 (1175)
.|.+.|.+++..|+|- +|...|-+ +|...+..+.++++++|+.|..+..|+|++.--
T Consensus 127 ~F~~~e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf----------------- 187 (586)
T KOG2007|consen 127 RFCYYEEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKF----------------- 187 (586)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccchhh--hchHHHHHHHHHHHhCCceeeeCCcEEEecccc-----------------
Confidence 5779999999999985 56555555 499999999999999999999999999987731
Q ss_pred cCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCC-c--hHHHHHHHHh--h
Q psy7266 428 EDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWS-S--NARVICKAWL--K 502 (1175)
Q Consensus 428 ~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~wl--~ 502 (1175)
+..+|... |.. + .+..++..-. . ..-+-+-=|- +
T Consensus 188 ~~~YgKL~---G~~----~----------------------------------~~~~gEg~l~ds~KR~p~DFALWKAsK 226 (586)
T KOG2007|consen 188 PHSYGKLV---GQR----K----------------------------------NLQEGEGVLSDSRKRSPADFALWKASK 226 (586)
T ss_pred cchhhhhc---Cch----h----------------------------------hcccCcCccccccCCChhhhhhhhhcC
Confidence 11112110 100 0 0000000000 0 0000111121 1
Q ss_pred cCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccC
Q psy7266 503 DGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKV 582 (1175)
Q Consensus 503 ~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p 582 (1175)
.|-.-| ...||...|.|+-|+.+ .-..+...+ .| +|-.|.|..+.|+-.-.|...+....-.|.
T Consensus 227 ~gEP~W----eSPWG~GRPGWHIECSa------Mas~~lG~~---lD---IH~GG~DL~FPHHeNEiAQ~eA~~~~~~wV 290 (586)
T KOG2007|consen 227 PGEPSW----ESPWGKGRPGWHIECSA------MASAILGSQ---LD---IHGGGIDLAFPHHENEIAQSEAAFDDSQWV 290 (586)
T ss_pred CCCCCC----CCCCCCCCCCceeeeHH------HHHHhhccc---cc---eecCcccccCCCcccHHHHHHHHhcCCccc
Confidence 344445 57899999999877655 000111111 11 899999999999998888777765555689
Q ss_pred eEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHH
Q psy7266 583 NHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRAL 662 (1175)
Q Consensus 583 ~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~ 662 (1175)
++++++|+|+++|+|||||++|+|+..+++++ |+|+.||++++. ....++++|+.+.+... ..+...+.||+.-+-
T Consensus 291 nYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~-~sp~qLRl~fl~-~~wr~~ldYs~s~m~~a--~q~e~~~~~ff~~~~ 366 (586)
T KOG2007|consen 291 NYFLHTGHLTINGEKMSKSLKNFITIKEALKK-YSPRQLRLAFLL-HQWRSPLDYSDSTMEQA--LQLEKSLNNFFLDVK 366 (586)
T ss_pred eeEEEcCeeeeccchhhhhhccceeHHHHHHh-cCHHHHHHHHHH-HHhcCcCCchHHHHHHH--HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999996 999999999998 44567899999977654 234455666655444
Q ss_pred HHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 663 SFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 663 ~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
.+.. ...|...+.+.+..+...+......+..++ ++++.+.++..+.+++..+|.||....
T Consensus 367 al~~----~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~ 428 (586)
T KOG2007|consen 367 ALLR----GAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESG 428 (586)
T ss_pred HHHh----ccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHhc
Confidence 4433 222223467788899999999999999998 999999999999999999999998765
|
|
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=284.69 Aligned_cols=269 Identities=13% Similarity=0.203 Sum_probs=179.8
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcc--------hHH------------HHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYG--------TAT------------ETKAL 340 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G--------~~i------------e~~a~ 340 (1175)
+.++|++++ +|||.+||||+++.+ .+|+++|++|++|++|.|++|+|+|| +|. ...++
T Consensus 23 ~~~~~~~g~-~psG~~HiG~~~e~~-~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~ 100 (510)
T PRK00750 23 PPVVVETGI-GPSGLPHIGNFREVA-RTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPD 100 (510)
T ss_pred CcEEEEeCC-CCCCCcccccccchh-hHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCC
Confidence 348888888 699999999999755 59999999999999999999999996 333 22333
Q ss_pred HcCCCchhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecc
Q psy7266 341 EEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEG 420 (1175)
Q Consensus 341 ~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g 420 (1175)
..|+ +.+++++|.+.|.+.|+.|||++|.++.|.......+.+.+...|.+++.|..--.+.. +.-+.+.|.
T Consensus 101 p~G~-~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~-----~~~~~~~~~-- 172 (510)
T PRK00750 101 PFGC-HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALENRDEIMEILLPYL-----GEERQATYS-- 172 (510)
T ss_pred CCCC-chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhc-----CCccCCCee--
Confidence 4455 89999999999999999999999988777665566777777777777777743211110 000111111
Q ss_pred cCCCccccCCCCCcccccCCccccc----cc---cCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchH
Q psy7266 421 VCPKCRYEDARGDQCDGCGQLINAI----EL---IQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNA 493 (1175)
Q Consensus 421 ~cP~c~~~d~~G~~c~~~g~~~~~~----el---~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~ 493 (1175)
.+-..|++||+..... +. ..-+++.||+.-+.-... ---
T Consensus 173 ---------P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~-g~~------------------------ 218 (510)
T PRK00750 173 ---------PFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTG-GHG------------------------ 218 (510)
T ss_pred ---------eeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCC-CCc------------------------
Confidence 1223466666654311 11 112233477655532111 000
Q ss_pred HHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccc-hhHhHHHHHH
Q psy7266 494 RVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVP-FHSIMFPATL 572 (1175)
Q Consensus 494 ~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~-fh~~~~pa~l 572 (1175)
.+.|-+..|. +|+-.+ |+ +...|+||.. .|.... .+.
T Consensus 219 -------------------KL~Wr~dW~~----------------rW~~l~-----Vd-~e~~GkDh~~~s~~~~~-~i~ 256 (510)
T PRK00750 219 -------------------KLQWKVDWPM----------------RWAALG-----VD-FEPFGKDHASASYDTSK-KIA 256 (510)
T ss_pred -------------------ccCCCCCcHH----------------HHHHcC-----CC-EEeeCcccCcchHHHHH-HHH
Confidence 1222222221 122111 11 6788999987 544432 222
Q ss_pred H-HhCCCcccCeEEEeeceeecC-CCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccH
Q psy7266 573 V-AAGDQYTKVNHIMATEYLNYE-DGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSW 639 (1175)
Q Consensus 573 ~-~~~~~~~~p~~i~~~g~l~~~-G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~ 639 (1175)
. .+ +..+|.+ ++|||++.+ |+|||||+||+|++.|+++. +++|++|||++...+..+|++|++
T Consensus 257 ~~il--g~~~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~-~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 257 REIL--GGEPPEP-FVYELFLDKKGEKISKSKGNVITIEDWLEY-APPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred HHHc--CCCCCee-eeeeeEEeCCCCcccccCCCccCHHHHHHH-CCHHHHHHHHHhCCCCCCCCcccH
Confidence 2 33 4566755 779999877 99999999999999999996 999999999997777889999998
|
|
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-23 Score=248.52 Aligned_cols=335 Identities=12% Similarity=0.158 Sum_probs=234.6
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH---HcCCC---c------
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL---EEGLT---P------ 346 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~---~~g~~---p------ 346 (1175)
.+++++|...-|||+|++||||+|+++| +|+++|.++..||+|.-....+|+|..+-..+. +.|.. +
T Consensus 111 ~~~~v~vE~sSpNp~kplHvGH~R~aii-Gd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 189 (562)
T PRK12451 111 CEKTVVIDYSSPNIAKPFSMGHLRSTMI-GNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRE 189 (562)
T ss_pred CCCEEEEEecCCCCCCCcccchhhhHHH-HHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHH
Confidence 3578999999999999999999999998 999999999999999999999999987765431 11211 0
Q ss_pred ----------------------------------------hhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHH
Q psy7266 347 ----------------------------------------RQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHL 386 (1175)
Q Consensus 347 ----------------------------------------~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~ 386 (1175)
+.+++...+.|+++|++|||.||++...+ .|...+..+
T Consensus 190 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~es--~~~~~~~~v 267 (562)
T PRK12451 190 LFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGEA--FYNDLMEDF 267 (562)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecchH--hhhhhHHHH
Confidence 01122334678899999999999775333 477778999
Q ss_pred HHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeeccc
Q psy7266 387 FDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQ 466 (1175)
Q Consensus 387 f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~q 466 (1175)
+..|.++|++|+.+...+.+.. ..|+ .+.+.+
T Consensus 268 ~~~L~~~g~~~e~dGa~~~~~~---------------------~~g~-----------------------~~~vl~---- 299 (562)
T PRK12451 268 IGILEEHDLLEESEGALVVNLE---------------------EEGM-----------------------PPCLIR---- 299 (562)
T ss_pred HHHHHHCCCEEecCCeEEEEec---------------------ccCC-----------------------CceEEE----
Confidence 9999999999987665443211 0010 011111
Q ss_pred ccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCC
Q psy7266 467 LFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATP 546 (1175)
Q Consensus 467 wfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~ 546 (1175)
++++.+....+.+.....+- .| +..|
T Consensus 300 -----------------ksDGt~~Y~t~DiA~~~~k~-------~~----------------------------~~~d-- 325 (562)
T PRK12451 300 -----------------KSDGATIYATRDLTAALYRQ-------NT----------------------------FGFD-- 325 (562)
T ss_pred -----------------eCCCccccchhHHHHHHHHh-------hc----------------------------cCCC--
Confidence 12223444445444333320 00 1112
Q ss_pred CCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCe--EEEeeceeecCCCcccccCCCccCchhhhhc----------
Q psy7266 547 QSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVN--HIMATEYLNYEDGKFSKSRGTGVFGNNAKDT---------- 614 (1175)
Q Consensus 547 ~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~--~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~---------- 614 (1175)
.+++++|.||-..-..++ +++..+| +.+.. .++.+|+|+.+|+||||++||+|+.+|+++.
T Consensus 326 ----~~IyV~g~dq~~h~~~l~-~~~~~lg--~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~ 398 (562)
T PRK12451 326 ----KALYVVGPEQSLHFNQFF-TVLKKLG--YTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIE 398 (562)
T ss_pred ----EEEEEeCCcHHHHHHHHH-HHHHHcC--CCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHH
Confidence 358899999764333333 4555555 33333 4566788988999999999999999999983
Q ss_pred --------------CCCchhHHHHHHhcCCCCCCccccHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCC
Q psy7266 615 --------------GLPADIFRFYLLYVRPENQDTSFSWQDLATKN-NSELLNNLGNFINRALSFIEKNYGSTI-PEISP 678 (1175)
Q Consensus 615 --------------~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~-n~~l~~~l~n~~~r~~~~~~~~~~~~~-p~~~~ 678 (1175)
.+|.|++||++++..+ .++++|+|+.+.... |... -+....-|+.+++.+.-.... ....+
T Consensus 399 ~~~~~l~~~~~~a~~vg~~Airy~~l~~~~-~~~~~Fd~d~~l~~~g~t~p--YiQYa~AR~~SIlrka~~~~~~~~~~l 475 (562)
T PRK12451 399 EKNPNLKQKEEVAKQVGVGAVIFHDLKNER-MHNIEFSLENMLKFEGETGP--YVQYTHARACSILRKESVEFETCTFAL 475 (562)
T ss_pred hhccccccHHHHHHHhccceeeeHHhhcCC-CCCceECHHHHhCcCCCccH--HHHHHHHHHHHHHHhcCCCccccccCC
Confidence 2678999999999655 489999999975432 2211 334444599999887521100 01122
Q ss_pred -ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 679 -IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 679 -~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
++.+..++..+..+...+.++++.++++.++..+++++..+|.|++.++-
T Consensus 476 ~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~V 526 (562)
T PRK12451 476 KDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRI 526 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56778899999999999999999999999999999999999999987763
|
|
| >KOG1147|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-25 Score=245.83 Aligned_cols=422 Identities=17% Similarity=0.284 Sum_probs=266.9
Q ss_pred eCCCcEEeCHHHHHHHH----------cCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc-
Q psy7266 49 LDDGSQLFSANQSCLYL----------SKFDTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS- 117 (1175)
Q Consensus 49 ~~dG~~l~eS~aI~~YL----------~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~- 117 (1175)
..||..+.++..+.+|. ++.+ .++++++.|+.|+.+ ....++...+..|+.+|.
T Consensus 42 ~~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~--------------~~~~~~s~~~~~ld~~l~~ 106 (712)
T KOG1147|consen 42 FLDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST--------------FSFDEISSSLSELDKFLVL 106 (712)
T ss_pred ccccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh--------------cchHHHHHHHHHHHhhhhH
Confidence 45566666666677763 3444 788999999999874 234677888999999999
Q ss_pred CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHHHHHhcccccccCchhhhhhhh
Q psy7266 118 NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTWTEVLKGSANDVGSLSEALFSL 197 (1175)
Q Consensus 118 ~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~~~~~kg~~~~~~~~~~~~~k~ 197 (1175)
++||+|+++|+||+++|++|..-.+..........+.+|.|||+ .|.+++++..+...+. .+++
T Consensus 107 ~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~----~~~~~~a~~~v~~t~~------------~~~k 170 (712)
T KOG1147|consen 107 RTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYD----LPEFQEAHNKVLATLV------------ELKK 170 (712)
T ss_pred HHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcC----cHhHHHHHHHHHHHHH------------hhcc
Confidence 99999999999999999999973222221122457899999998 5555555555521111 1110
Q ss_pred hhhhhcCcccccccccccccccccccCCCccccCCCccccccccccCCCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q psy7266 198 SIASQSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDDLSSKSKDVTSEEIEQTKVAWTQGSPVPLRTRTAPVLPQ 277 (1175)
Q Consensus 198 ~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iE~~~~~W~~~~~~~~~~~~~~~~p~ 277 (1175)
+..+.++++++.+++ +....+.+|.
T Consensus 171 ------------------~~~a~k~k~s~~~~~-------------------------------------~~~~ev~lP~ 195 (712)
T KOG1147|consen 171 ------------------SVNAGKKKESGQKKK-------------------------------------KENKEVDLPG 195 (712)
T ss_pred ------------------cccCccccccccccc-------------------------------------cCCccccCCc
Confidence 111111111111110 0112233554
Q ss_pred CCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHH
Q psy7266 278 PNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIH 357 (1175)
Q Consensus 278 ~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~ 357 (1175)
. ...-+++..||-|||+||||||..+.| .-+|+-- |+-..++-+| +++|....++|.+.|
T Consensus 196 a-e~GkVv~RFPPEpSGyLHIGHAKAALL-NqYfa~~-----~~G~LIvRFD-------------DTNPaKE~~eFe~~I 255 (712)
T KOG1147|consen 196 A-EMGKVVTRFPPEPSGYLHIGHAKAALL-NQYFAQA-----YQGKLIVRFD-------------DTNPAKENEEFEDVI 255 (712)
T ss_pred c-ccCceEEecCCCCCceeehhhHHHHHH-HHHHHHh-----cCceEEEEec-------------CCCcchhhHHHHHHH
Confidence 3 333478889999999999999998777 5444431 2223444444 589999999999999
Q ss_pred HHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccce--ecccCCCcccc-------
Q psy7266 358 REVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRF--VEGVCPKCRYE------- 428 (1175)
Q Consensus 358 ~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~--V~g~cP~c~~~------- 428 (1175)
.+++..|||..|.+.+|+| |++.+.++..+|++.|.+|.++++. ++.-.+|+ |+..|.....+
T Consensus 256 leDl~~LgIkpd~~TyTSD--yF~~i~dycv~likeGKAYvDDTp~------E~Mr~ER~~gv~Sk~R~~~vEenl~iw~ 327 (712)
T KOG1147|consen 256 LEDLSLLGIKPDRVTYTSD--YFDEIMDYCVKLIKEGKAYVDDTPT------EQMRDEREQGVESKCRSNSVEENLRIWE 327 (712)
T ss_pred HHHHHHhCcCcceeeechh--hHHHHHHHHHHHHhcCcccccCCcH------HHHHHHHhccccccccCCCHHHHHHHHH
Confidence 9999999999999978876 9999999999999999999988765 22222222 33334222211
Q ss_pred -----CCCCCcccccCCccc---cccccCCcccCCCCccEEeecccccc-cchhHHHHHHHHHHhcCCCC---CchHHHH
Q psy7266 429 -----DARGDQCDGCGQLIN---AIELIQPRCKQCSQAPTVKSSTQLFL-ELPKIEDKLQSWVSETSDQW---SSNARVI 496 (1175)
Q Consensus 429 -----d~~G~~c~~~g~~~~---~~el~~~~c~r~~~~~~~~~~~qwfl-~l~~~~~~l~~~~~~~~~~~---~~~~~~~ 496 (1175)
...|..|+..+++.. ..-+.+|+..||+-.++.|....|=+ ..-+|...+.+.++...... ..+-|+.
T Consensus 328 EM~kGs~~Gl~~CvRaKIdm~s~NkaMRDPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~ 407 (712)
T KOG1147|consen 328 EMKKGSEKGLKCCVRAKIDMSSPNKAMRDPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNA 407 (712)
T ss_pred HHhccchhhhhhheeeeecccCCCccccCCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccch
Confidence 367888887777642 23578999999999999998877643 23356666666666543211 1223566
Q ss_pred HHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhC
Q psy7266 497 CKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAG 576 (1175)
Q Consensus 497 ~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~ 576 (1175)
+..|+-+.|+= +-|- .|- |-.+.+.-.+++-.
T Consensus 408 Qyyw~i~al~L-----------Rkp~-----------------iwe--------------------fsRlN~~nTvLSKR 439 (712)
T KOG1147|consen 408 QYYWFIDALGL-----------RKPH-----------------IWE--------------------FSRLNFVNTVLSKR 439 (712)
T ss_pred HHHHHHHHhcC-----------Cccc-----------------eee--------------------hhhhhhHhhhhhhh
Confidence 67777543321 1110 011 11111222222211
Q ss_pred CCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHH
Q psy7266 577 DQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLA 643 (1175)
Q Consensus 577 ~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~ 643 (1175)
-..-++-+|+|. -++=. +.+.+-++.+|+..++||=|++.+++-.+-...+|+.+-
T Consensus 440 ----KLtwfVd~GlV~GWDDPR-------fpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiW 496 (712)
T KOG1147|consen 440 ----KLTWFVDEGLVDGWDDPR-------FPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIW 496 (712)
T ss_pred ----heeeeeccCcccCCCCCC-------cchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhh
Confidence 112233445552 23322 334445677889999999999999888777888998764
|
|
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=242.11 Aligned_cols=369 Identities=15% Similarity=0.153 Sum_probs=244.3
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH-------H-cC-------
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL-------E-EG------- 343 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~-------~-~g------- 343 (1175)
..++++|...-|||+|++||||+|+++| +|+++|.++..||+|......+|+|..+...+. + .+
T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aii-GDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~ 193 (577)
T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAII-GDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDG 193 (577)
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhHH-HHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcch
Confidence 3578999999999999999999999998 999999999999999999999999987754321 0 00
Q ss_pred --------------CCch------------------h------hHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHH
Q psy7266 344 --------------LTPR------------------Q------ICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQH 385 (1175)
Q Consensus 344 --------------~~p~------------------~------~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~ 385 (1175)
.++. + +++.....+++++.+|||+||.|...++..+...+..
T Consensus 194 ~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~ 273 (577)
T COG0018 194 YLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEK 273 (577)
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHH
Confidence 0011 1 3334456788999999999999987777778888999
Q ss_pred HHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecc
Q psy7266 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSST 465 (1175)
Q Consensus 386 ~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~ 465 (1175)
+...|.++|++|+.+.. +|.....+. .+|+. .+.+.+
T Consensus 274 vv~~L~~~~~~~e~~GA--~~vdl~~~~----------------~~gd~----------------------~~~vl~--- 310 (577)
T COG0018 274 VVEDLEEKGLLYEDDGA--LVVDLLKFK----------------KFGDD----------------------KDRVLQ--- 310 (577)
T ss_pred HHHHHHhcCCEeeeCCe--EEEehhhhh----------------hcCCC----------------------CCeEEE---
Confidence 99999999999994322 222211110 01110 011111
Q ss_pred cccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCC
Q psy7266 466 QLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTAT 545 (1175)
Q Consensus 466 qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~ 545 (1175)
++++.+....+.+....-+-+ +..+
T Consensus 311 ------------------KSDGt~lY~t~DIAy~~~K~~------------------------------------~~~d- 335 (577)
T COG0018 311 ------------------KSDGTYLYFTRDIAYHLYKFE------------------------------------RGFD- 335 (577)
T ss_pred ------------------EcCCCeeeehhHHHHHHHHHh------------------------------------cCCC-
Confidence 111123333333332222100 1122
Q ss_pred CCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEee-c--eee-cCCCcccccCCCccCchhhhhcCCC----
Q psy7266 546 PQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMAT-E--YLN-YEDGKFSKSRGTGVFGNNAKDTGLP---- 617 (1175)
Q Consensus 546 ~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~-g--~l~-~~G~KMSKS~GN~v~~~d~i~~~~g---- 617 (1175)
.+++++|.||--.-..++.+ +...| +.+++.++.| + ++. -+|.||||+.|++|+.+|+++. .+
T Consensus 336 -----~~IyV~gadq~~~~~ql~~~-l~~~g--~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde-~~era~ 406 (577)
T COG0018 336 -----KLIYVLGADQHGHFKQLKAV-LELLG--YGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDE-AGERAP 406 (577)
T ss_pred -----EEEEEeCCcchhHHHHHHHH-HHHhc--CCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHH-HHHHhh
Confidence 35889999987544444433 33333 4445433333 3 333 3678999999999999999985 55
Q ss_pred ------------------chhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---
Q psy7266 618 ------------------ADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEI--- 676 (1175)
Q Consensus 618 ------------------aDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~--- 676 (1175)
.||+||++++..+ ..++.|+|+.+.+..+ +-+-.+.....|+.+++.+.-....+..
T Consensus 407 ~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~lsfeg-Nt~pYvQYA~ARi~SIlrka~e~~~~~~~~~ 484 (577)
T COG0018 407 EEMEEKEEKNEEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALSFEG-NTAPYVQYAHARICSILRKAGEDELDLSTEA 484 (577)
T ss_pred hHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHhccC-CCchhHHHHHHHHHHHHHhcccccccccccc
Confidence 8999999999655 4799999999875433 3333344444589998887542222211
Q ss_pred --CC-ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChh-hHHHHHHHHHHHHHH
Q psy7266 677 --SP-IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPE-QKSRASTVLGILCQV 752 (1175)
Q Consensus 677 --~~-~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~-~~~~~~~vl~~~~~~ 752 (1175)
.+ .+.++.|+..+.++...+.++.+.++++..+.++++++..+|.|++.++- +..++.+ ..+|+ .++.....+
T Consensus 485 ~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~V--l~~~~~~~~~aRL-~L~~a~~~v 561 (577)
T COG0018 485 DALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACPV--LGAENEELRAARL-ALVKATRQV 561 (577)
T ss_pred chhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCCc--CCCCcHHHHHHHH-HHHHHHHHH
Confidence 22 34468899999999999999999999999999999999999999998764 4333221 11222 233334455
Q ss_pred HHHHHHHc
Q psy7266 753 SYLLSLLL 760 (1175)
Q Consensus 753 l~~l~~lL 760 (1175)
|+..+.||
T Consensus 562 L~ngL~LL 569 (577)
T COG0018 562 LKNGLDLL 569 (577)
T ss_pred HHHHHHhc
Confidence 55555554
|
|
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-21 Score=231.83 Aligned_cols=363 Identities=12% Similarity=0.100 Sum_probs=244.5
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHH----cCC--Cch-----
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALE----EGL--TPR----- 347 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~----~g~--~p~----- 347 (1175)
++++++|...-|||+|++||||+|+++| +|+++|.++..||+|.-....+|+|..+-..+.. .+. .+.
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsaii-GdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 193 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRSTII-GDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIG 193 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccchhh-HHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHH
Confidence 4478999999999999999999999998 9999999999999999999999999877654321 111 000
Q ss_pred ------------------------------------------hhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHH
Q psy7266 348 ------------------------------------------QICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQH 385 (1175)
Q Consensus 348 ------------------------------------------~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~ 385 (1175)
.+++.....|.+.+.+|||+||.+ .+..|...+..
T Consensus 194 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~~~~~ 270 (576)
T PLN02286 194 DLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNPYIPG 270 (576)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---CchhhhhhHHH
Confidence 112223356788899999999973 33347777899
Q ss_pred HHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecc
Q psy7266 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSST 465 (1175)
Q Consensus 386 ~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~ 465 (1175)
++..|.++|++|+.+...+.+ +.+ . +.+.+.+
T Consensus 271 vi~~L~~~g~~~e~dGa~~v~------l~~---------------~------------------------~~~~vl~--- 302 (576)
T PLN02286 271 VIEELESKGLVVESDGARVIF------VEG---------------F------------------------DIPLIVV--- 302 (576)
T ss_pred HHHHHHHCCCEEeeCCceEee------ccC---------------C------------------------CCceEEE---
Confidence 999999999999765443221 000 0 0011111
Q ss_pred cccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCC
Q psy7266 466 QLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTAT 545 (1175)
Q Consensus 466 qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~ 545 (1175)
+.++.+....+.+...+.+- .| |..|
T Consensus 303 ------------------ksDGt~tY~t~DIA~~~~k~-------~~----------------------------~~~d- 328 (576)
T PLN02286 303 ------------------KSDGGFNYASTDLAALWYRL-------NE----------------------------EKAE- 328 (576)
T ss_pred ------------------ECCCchhhHHHHHHHHHHHH-------hc----------------------------cCCC-
Confidence 12223555556655544430 00 1111
Q ss_pred CCCcceEEEEeeccccchhHhHHHHHHHHhCCCcc-cC--eEEEeeceee-cCCCcccccCCCccCchhhhhc-------
Q psy7266 546 PQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYT-KV--NHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDT------- 614 (1175)
Q Consensus 546 ~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~-~p--~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~------- 614 (1175)
.+++++|.||...-..++ +++..+|.... +. -.++.+|+|+ .+|+||||++||+|+.+|+++.
T Consensus 329 -----~~IyVvg~~q~~hf~~v~-~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~ 402 (576)
T PLN02286 329 -----WIIYVTDVGQQQHFDMVF-KAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKA 402 (576)
T ss_pred -----EEEEEEeCcHHHHHHHHH-HHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHH
Confidence 348899999864333333 45566653211 01 3467789996 6888999999999999999983
Q ss_pred ---------------------CCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC-
Q psy7266 615 ---------------------GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGST- 672 (1175)
Q Consensus 615 ---------------------~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~- 672 (1175)
.+|.|++||++++..+ ..+++|+|+.+.+...+.-. -+.....|+.+++.+.-...
T Consensus 403 ~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~-~~~~~Fd~d~~l~~~g~t~p-YlQYahAR~~SIlrKa~~~~~ 480 (576)
T PLN02286 403 ALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNR-LTNYTFSFDQMLDLKGNTAV-YLLYAHARICSIIRKSGKDID 480 (576)
T ss_pred HHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCC-CCCCccCHHHHHhhcCCChH-HHHHHHHHHHHHHHhccCccc
Confidence 3578999999999655 48999999997643221111 34555569999988752211
Q ss_pred -CC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHH
Q psy7266 673 -IP---EISP-IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLG 747 (1175)
Q Consensus 673 -~p---~~~~-~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~ 747 (1175)
.. ...+ ++.++.|+..+..+...+..+.+.++++..+.++++++..+|.|++.++ ++. .++. ..|+ ..+.
T Consensus 481 ~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~--Vl~-~~~~-~aRL-~L~~ 555 (576)
T PLN02286 481 ELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCK--VNG-SEEE-TSRL-LLCE 555 (576)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCc--cCC-CCch-hHHH-HHHH
Confidence 11 1122 5677899999999999999999999999999999999999999998774 232 2211 2332 2233
Q ss_pred HHHHHHHHHHHHc
Q psy7266 748 ILCQVSYLLSLLL 760 (1175)
Q Consensus 748 ~~~~~l~~l~~lL 760 (1175)
....+|...+.||
T Consensus 556 a~~~vL~~gL~LL 568 (576)
T PLN02286 556 ATAIVMRKCFHLL 568 (576)
T ss_pred HHHHHHHHHHHhc
Confidence 3455666555555
|
|
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-22 Score=239.31 Aligned_cols=263 Identities=17% Similarity=0.279 Sum_probs=169.9
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCc------------------chHHHHHHHHc
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEY------------------GTATETKALEE 342 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~------------------G~~ie~~a~~~ 342 (1175)
++++|+++.+ |||.+||||+++.+ .+|+++|++|++|++|.+++|+|+| |.|+...+...
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~-~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVI-TADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhh-HHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 4699999998 99999999999855 5999999999999999999999999 99999999999
Q ss_pred CCCchhhHHHHHHHHHHHHhhccccccccCCCC---CHHHHHHHHHHHHHHHHcCCEE---ec-eEEEeeeCCCCccccc
Q psy7266 343 GLTPRQICDKYFAIHREVYEWFEIDFDYFGRTS---TPQQTEIVQHLFDRVHKAGFTS---SA-SVEQLHCAQCDRFLAD 415 (1175)
Q Consensus 343 g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~---~~~~~~~v~~~f~~L~~~G~iy---~~-~~~~~~c~~~~~~l~d 415 (1175)
|++ ..++++|...|.+.++.|||+++..+.|. +-.|.+.+..++++-.+-.-|. ++ .....|.
T Consensus 96 g~~-~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~--------- 165 (515)
T TIGR00467 96 GCK-TSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWY--------- 165 (515)
T ss_pred CCc-HHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCce---------
Confidence 986 89999999999999999999998875432 2245555555544433322221 11 1111111
Q ss_pred ceecccCCCccccCCCCCcccccCCccccc------cccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCC
Q psy7266 416 RFVEGVCPKCRYEDARGDQCDGCGQLINAI------ELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW 489 (1175)
Q Consensus 416 ~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~------el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~ 489 (1175)
.+-..|++||+...+. .-+...| .||+..+.-.... ..
T Consensus 166 --------------P~~pic~~cGrv~~~~~~~~~~~~v~Y~c-~cG~~g~~~~~~g-----------------~~---- 209 (515)
T TIGR00467 166 --------------PISVFCENCGRDTTTVNNYDNEYSIEYSC-ECGNQESVDIYTG-----------------AI---- 209 (515)
T ss_pred --------------eeeeecCCcCccCceEEEecCCceEEEEc-CCCCEEEEeecCC-----------------Cc----
Confidence 1122455555543211 0122244 3666555321110 00
Q ss_pred CchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccc----hhH
Q psy7266 490 SSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVP----FHS 565 (1175)
Q Consensus 490 ~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~----fh~ 565 (1175)
.+.|-+..|. +|+-.+ |+ +-..|+||.- +-.
T Consensus 210 -----------------------KL~WkvdW~~----------------RW~~lg-----V~-~Ep~GkDH~~~ggsy~~ 244 (515)
T TIGR00467 210 -----------------------KLPWRVDWPA----------------RWKIEK-----VT-FEPAGKDHAAAGGSYDT 244 (515)
T ss_pred -----------------------ccCCCCCcHh----------------hHhhhC-----cc-cccCCCCccCccCCchh
Confidence 1222222221 122111 11 4456888864 222
Q ss_pred hHHHHHHHHhCCCcccCeEEEeecee--ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHH
Q psy7266 566 IMFPATLVAAGDQYTKVNHIMATEYL--NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDL 642 (1175)
Q Consensus 566 ~~~pa~l~~~~~~~~~p~~i~~~g~l--~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~ 642 (1175)
-...+. ..++ ..+|.. +.++|+ ..+|+|||||+||+|++.|+++. +++|++||++++ ....++++|+++.+
T Consensus 245 ~~~ia~-~~l~--~~~P~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~-~~pdalR~~~l~-~~~~~~ldFd~~~l 317 (515)
T TIGR00467 245 GVNIAK-EIFQ--YSPPVT-VQYEWISLKGKGGKMSSSKGDVISVKDVLEV-YTPEITRFLFAR-TKPEFHISFDLDVI 317 (515)
T ss_pred HHHHHH-HHhC--CCCCcC-cEEEEEEEcCCCccccCCCCCCccHHHHHHH-cCHHHHHHHHhc-cCCCCCCcCCHHHH
Confidence 222222 2332 444544 336665 34677999999999999999997 999999999777 45568999999966
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-22 Score=212.70 Aligned_cols=124 Identities=12% Similarity=0.182 Sum_probs=113.9
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
+++|...+|||||+|||||+|++++ +|+++||+|+.||+|.++.++||+|++|+..|...+ .+.++++.+.+.+.+++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vi-gD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~ 78 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAII-GDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETY 78 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHH-HHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999877 999999999999999999999999999999997664 38999999999999999
Q ss_pred hhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCC
Q psy7266 362 EWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQC 409 (1175)
Q Consensus 362 ~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~ 409 (1175)
++|||++|.+.+|++ +...++.+++.|.++|++|+.+..+++|+.+
T Consensus 79 ~~L~i~~d~~~~es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 79 GRLDVRFDVWFGESS--YLGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHhCCcCceecchhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 999999999988886 4899999999999999999988877777654
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >PRK09481 sspA stringent starvation protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=211.92 Aligned_cols=173 Identities=12% Similarity=0.148 Sum_probs=139.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++|+++|.++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.||++||.
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~-~~g~~l~ES~AIl~YL~~~~~~~~l~ 89 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLV-DRELTLYESRIIMEYLDERFPHPPLM 89 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEE-ECCEEeeCHHHHHHHHHHhCCCCCCC
Confidence 689999999999999999999999999999987542 278999999996 78899999999999996
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPL 140 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~ 140 (1175)
|.++.+++.+++|+.+....+.+....+. .+. ...+.+...|..||++|. ++||+|+++|+|||++++.+.++
T Consensus 90 p~~~~~ra~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~~ 168 (211)
T PRK09481 90 PVYPVARGESRLMMHRIEKDWYSLMNKIV-NGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRL 168 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHHH
Confidence 45677889999999887655544332221 121 223467888999999999 99999999999999999999875
Q ss_pred hhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 141 LSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 141 ~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
..... ......||+|.+|+++|.++|++++++..-
T Consensus 169 ~~~~~-~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~ 203 (211)
T PRK09481 169 PVLGI-ELSGPGAKELKGYMTRVFERDSFLASLTEA 203 (211)
T ss_pred HhcCC-CCCCCCChhHHHHHHHHhccHHHHHHcCHH
Confidence 43222 122257999999999999999999887644
|
|
| >PLN02473 glutathione S-transferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-22 Score=213.58 Aligned_cols=175 Identities=19% Similarity=0.318 Sum_probs=139.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++|+++|.++|++|+.+.+++.+. .+||+|+||+|+ +||.+|+||.||++||.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIE-DGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEE-ECCEEEEehHHHHHHHHHHcCCc
Confidence 799999999999999999999999999999987642 169999999996 68899999999999995
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhhhh-----hhc--CCCC--------chHHHHHHHHHHHHHhc-CCcccCCC
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSVLS-----FFD--NPKV--------LPDNLKTKLNVLNEAIS-NSFLIENS 125 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~~~-----~~~--~g~~--------~~~~l~~~L~~Le~~L~-~~fLvG~~ 125 (1175)
|.++.+++++++|+.+....+.+.... .+. .+.. ....+.+.|+.||++|+ ++|++|++
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 161 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDE 161 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 345678899999999887766543211 111 1111 12467788999999999 89999999
Q ss_pred CCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 126 lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+|+|||++++.+.++............||+|.+|+++|.++|++++++...
T Consensus 162 ~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~~ 212 (214)
T PLN02473 162 FTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMELA 212 (214)
T ss_pred CCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHHh
Confidence 999999999999875422211123578999999999999999999988653
|
|
| >PRK10542 glutathionine S-transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=208.70 Aligned_cols=171 Identities=23% Similarity=0.327 Sum_probs=141.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.+ ++++++++|+++|++|+.+.+++... .+||.|+||+|+.+||.+|+||.||++||.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 799999876 79999999999999999999987531 278999999998789999999999999995
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|.++.+++++++|+.|..+.+.+.+..++.... ...+.+.+.|+.||++|. ++||+|+++|+|||+++
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~ 159 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYLF 159 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHHH
Confidence 345678899999999988877776554433111 123467888999999999 99999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.+.++.... .....||+|.+|+++|.++|.|++++..
T Consensus 160 ~~~~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 160 TVLRWAYAVK---LNLEGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHHHHhhccC---CCcccchHHHHHHHHHHcCHHHHHHHHH
Confidence 9998864332 2346899999999999999999998864
|
|
| >PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=210.16 Aligned_cols=172 Identities=23% Similarity=0.343 Sum_probs=138.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEe----CCC--cEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLEL----DDG--SQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~----~dG--~~l~eS~aI~~YL~ 66 (1175)
|+||+++ ++++++|+++|+++|++|+.+.+++..+ .+||.|+||+|+. +|| .+|+||.||++||.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 6899887 6999999999999999999999987542 2799999999986 356 47999999999986
Q ss_pred -------CCChHHHHHHHHHHHHHhhhchhhhhhhhcC----CC-------CchHHHHHHHHHHHHHhc-CCcccCCCCC
Q psy7266 67 -------KFDTKNESAINQWLEWESVELFPSVLSFFDN----PK-------VLPDNLKTKLNVLNEAIS-NSFLIENSTT 127 (1175)
Q Consensus 67 -------p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~----g~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lT 127 (1175)
|.++.+++++++|+.|..+.+.+.+...... .. .....+.+.|..||.+|. ++||+|+++|
T Consensus 81 ~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t 160 (215)
T PRK13972 81 EKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYS 160 (215)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCCCCC
Confidence 5567899999999999988877654322110 11 112357788999999999 9999999999
Q ss_pred ccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 128 VADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 128 lADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+|||++++.+....... .....||+|.+|+++|.++|++++++..-
T Consensus 161 ~ADi~l~~~~~~~~~~~---~~~~~~P~l~~w~~r~~~rp~~~~~~~~~ 206 (215)
T PRK13972 161 IADIACWPWVNAWTRQR---IDLAMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_pred HHHHHHHHHHHHHhhcC---CcchhCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 99999998775433221 23578999999999999999999987654
|
|
| >PLN02395 glutathione S-transferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=203.70 Aligned_cols=174 Identities=19% Similarity=0.299 Sum_probs=138.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+.+. +++++++++|.++|++|+.+.+++..+ .+||.|+||+|+ ++|.+|+||.||++||.
T Consensus 3 ~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 3 LKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIV-DGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred EEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEE-ECCEEEEcHHHHHHHHHHHcCCC
Confidence 58998665 468999999999999999999987521 279999999996 77789999999999996
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhhhhhhc-------CCC--------CchHHHHHHHHHHHHHhc-CCcccCCC
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSVLSFFD-------NPK--------VLPDNLKTKLNVLNEAIS-NSFLIENS 125 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-------~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~ 125 (1175)
|.++.+++++++|+.|....+.+.+..... .+. ...+.+.+.|+.||++|+ ++|++|++
T Consensus 81 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 160 (215)
T PLN02395 81 GPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGDF 160 (215)
T ss_pred CcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence 245678999999999988777665433211 011 123456788999999999 99999999
Q ss_pred CCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 126 lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+|+|||++++.+.++............||+|.+|+++|.++|.+++++...
T Consensus 161 ~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~ 211 (215)
T PLN02395 161 VSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKY 211 (215)
T ss_pred cCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHh
Confidence 999999999988775322111223577999999999999999999998765
|
|
| >PRK10357 putative glutathione S-transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=201.42 Aligned_cols=172 Identities=13% Similarity=0.074 Sum_probs=137.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++|+++|+++|++|+.+.++... ..+||.|+||+|+.+||.+|+||.||++||.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~ 80 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAML 80 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCC
Confidence 79999999999999999999999999998888643 2379999999998788999999999999986
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhc---CCC--------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFD---NPK--------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|.++.+++++++|+.|..+.+.+.+..+.. .+. .....+.+.|+.||++|. +. |+|+++|+|||+++
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l~ 159 (202)
T PRK10357 81 PRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAIA 159 (202)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHHH
Confidence 456678889999988877666544322221 111 123467888999999999 77 99999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
+.+.++............||+|.+|+++|.++|+|+++.
T Consensus 160 ~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~ 198 (202)
T PRK10357 160 CAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTE 198 (202)
T ss_pred HHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcC
Confidence 999876432221122467999999999999999998753
|
|
| >PRK15113 glutathione S-transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-20 Score=198.28 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=135.4
Q ss_pred CEEEecC--CCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc----
Q psy7266 1 MKCLSNR--NNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS---- 66 (1175)
Q Consensus 1 m~Ly~~~--~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---- 66 (1175)
|+||+++ .||++++++++|.++|++|+.+.+++..+ .+||.|+||+|+ +||.+|+||.||++||.
T Consensus 6 ~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~-~~~~~l~ES~aI~~YL~~~~~ 84 (214)
T PRK15113 6 ITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQ-HDDFELSESSAIAEYLEERFA 84 (214)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEE-ECCEEEecHHHHHHHHHHHcC
Confidence 6899975 79999999999999999999999997642 279999999996 77899999999999986
Q ss_pred --------CCChHHHHHHHHHHHHHhhhchhhhhhh----hcCC-------CCchHHHHHHHHHHHHHhc--CCcccCCC
Q psy7266 67 --------KFDTKNESAINQWLEWESVELFPSVLSF----FDNP-------KVLPDNLKTKLNVLNEAIS--NSFLIENS 125 (1175)
Q Consensus 67 --------p~~~~~~a~v~~wl~~~~~~l~p~~~~~----~~~g-------~~~~~~l~~~L~~Le~~L~--~~fLvG~~ 125 (1175)
|.++.+++++++|+.|..+.+.+..... +..+ ....+.+.+.|..||++|+ +.|++|+
T Consensus 85 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~- 163 (214)
T PRK15113 85 PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFGE- 163 (214)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeCC-
Confidence 2356789999999999877665432111 0111 1234567899999999997 4799996
Q ss_pred CCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 126 lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+|+|||++++.+.++..... .. .|+|.+|++||.++|+|+++++..
T Consensus 164 ~TlADi~l~~~l~~~~~~~~---~~--~p~l~~~~~r~~~rp~~~~~~~~~ 209 (214)
T PRK15113 164 WCIADTDLALMLNRLVLHGD---EV--PERLADYATFQWQRASVQRWLALS 209 (214)
T ss_pred ccHHHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999999999987543221 12 299999999999999999999876
|
|
| >COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-20 Score=198.39 Aligned_cols=167 Identities=22% Similarity=0.326 Sum_probs=140.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-c------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-A------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------- 66 (1175)
|+||+++.||+++++++++.++|++|+.+.|++.. . .+||.|+||+|+++||.+|+||.||++||.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~ 80 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPP 80 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCC
Confidence 79999999999999999999999999999999974 1 279999999998888779999999999996
Q ss_pred --CCChH---HHHHHHHHHHHHhhhchhhhhhhhcCC------------CCchHHHHHHHHHHHHHhc-CCcccCCCCCc
Q psy7266 67 --KFDTK---NESAINQWLEWESVELFPSVLSFFDNP------------KVLPDNLKTKLNVLNEAIS-NSFLIENSTTV 128 (1175)
Q Consensus 67 --p~~~~---~~a~v~~wl~~~~~~l~p~~~~~~~~g------------~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTl 128 (1175)
|.++. +++.+..|+.|....+.+.+....... ....+.+...+..+|..|. ++|++|+++|+
T Consensus 81 l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ti 160 (211)
T COG0625 81 LLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFTI 160 (211)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCH
Confidence 33443 778888999999888888766644321 1234567889999999999 99999999999
Q ss_pred cchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHH
Q psy7266 129 ADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQ 170 (1175)
Q Consensus 129 ADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~ 170 (1175)
|||++++.+.++..... ....||+|.+|++|+.++|.++
T Consensus 161 AD~~~~~~~~~~~~~~~---~~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 161 ADIALAPLLWRLALLGE---ELADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHHHHHhhhcCc---ccccChHHHHHHHHHHcCCchh
Confidence 99999999998543332 2278999999999999999976
|
|
| >PRK11752 putative S-transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-20 Score=203.09 Aligned_cols=173 Identities=21% Similarity=0.352 Sum_probs=134.3
Q ss_pred CEEEecCCCchHHHHHHHHHhc------CCCcEEEEecCccc--------ccCCCCcccEEEeCCC---cEEeCHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFS------TTKLDVELVDVADA--------RLLLSKTVPVLELDDG---SQLFSANQSCL 63 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~------gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG---~~l~eS~aI~~ 63 (1175)
|+||+.+ ||++++|+++|.++ |++|+.+.|++... .+||.|+||+|+.+|| .+|+||.||++
T Consensus 45 ~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~ 123 (264)
T PRK11752 45 LQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAILL 123 (264)
T ss_pred eEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHHH
Confidence 6899875 89999999999997 89999999987542 2899999999987654 69999999999
Q ss_pred HHc-------CCChHHHHHHHHHHHHHhhhchh---hhhhhhc-CCCC-------chHHHHHHHHHHHHHhc-CCcccCC
Q psy7266 64 YLS-------KFDTKNESAINQWLEWESVELFP---SVLSFFD-NPKV-------LPDNLKTKLNVLNEAIS-NSFLIEN 124 (1175)
Q Consensus 64 YL~-------p~~~~~~a~v~~wl~~~~~~l~p---~~~~~~~-~g~~-------~~~~l~~~L~~Le~~L~-~~fLvG~ 124 (1175)
||. |.++.+++++++|+.|....+.. .+..++. .... ....+.+.|+.||++|. ++||+|+
T Consensus 124 YL~~~~~~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~Gd 203 (264)
T PRK11752 124 YLAEKFGAFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEYIAGD 203 (264)
T ss_pred HHHHhcCCcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 995 56778999999999988654311 1111111 1111 12356788999999999 9999999
Q ss_pred CCCccchhHHHHHHHHhhC----CCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 125 STTVADICIWTCVYPLLSD----SKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 125 ~lTlADi~l~~~L~~~~~~----~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
++|+|||++++.+.++... .........||+|.+|+++|.++|+|++++.
T Consensus 204 ~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~ 257 (264)
T PRK11752 204 EYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRI 257 (264)
T ss_pred ccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHh
Confidence 9999999999988765321 1111235789999999999999999999765
|
|
| >TIGR01262 maiA maleylacetoacetate isomerase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=195.74 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=136.1
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc---------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD---------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~---------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
+||+++.||++++++++|.++|++|+.+.+++.. ..+||+|+||+|+ +||.+|+||.+|++||.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLD-IDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEE-ECCEEeecHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999888621 2378999999997 68899999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhh----hhhhc--CCC--C-----chHHHHHHHHHHHHHhc-C--CcccCCCCC
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSV----LSFFD--NPK--V-----LPDNLKTKLNVLNEAIS-N--SFLIENSTT 127 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~----~~~~~--~g~--~-----~~~~l~~~L~~Le~~L~-~--~fLvG~~lT 127 (1175)
|.++.+++.+++|+.+....+.+.. ..++. .+. . ..+.+.+.|..||++|. + +||+|+++|
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 159 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPT 159 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCC
Confidence 4567889999999998876654421 11111 111 1 12357889999999998 4 499999999
Q ss_pred ccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 128 VADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 128 lADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+|||++++.+.++.... .....||+|.+|+++|.++|.+++++..
T Consensus 160 ~ADi~~~~~l~~~~~~~---~~~~~~p~l~~~~~~~~~rp~~~~~~~~ 204 (210)
T TIGR01262 160 LADLCLVPQVYNAERFG---VDLTPYPTLRRIAAALAALPAFQRAHPE 204 (210)
T ss_pred HHHHHHHHHHHHHHHcC---CCcccchHHHHHHHHHhcCHHHHHhCcc
Confidence 99999999998864322 2357899999999999999999988754
|
Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. |
| >KOG0406|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=188.23 Aligned_cols=176 Identities=17% Similarity=0.212 Sum_probs=146.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cC-CCCcccEEEeCCCcEEeCHHHHHHHHc--------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LL-LSKTVPVLELDDGSQLFSANQSCLYLS-------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~-P~g~vP~L~~~dG~~l~eS~aI~~YL~-------- 66 (1175)
++||++..||+++|++|+|+++||+|+++..|+.+.. .| +.++||+|+ ++|..|+||..|++||.
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~-Hn~k~i~ESliiveYiDe~w~~~~~ 88 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLE-HNGKPICESLIIVEYIDETWPSGPP 88 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEE-ECCceehhhHHHHHHHHhhccCCCC
Confidence 4799999999999999999999999999999998632 56 799999996 88888999999999984
Q ss_pred --CCChHHHHHHHHHHHHHhhhchhhhhhhhc-CC-C---CchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHH
Q psy7266 67 --KFDTKNESAINQWLEWESVELFPSVLSFFD-NP-K---VLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 67 --p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-~g-~---~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L 137 (1175)
|.||.+|++.+.|+++.+..++.....+.. .+ + ...+++...|..||+.|. .+|+.|+++++.||++|+.+
T Consensus 89 iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~ 168 (231)
T KOG0406|consen 89 ILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPSF 168 (231)
T ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhH
Confidence 789999999999999999887766555543 22 2 234568999999999999 89999999999999999777
Q ss_pred HHHhhC----C-CCCCCcccchhHHHHHHHHhcCHHHHHHHHHHH
Q psy7266 138 YPLLSD----S-KVRPLLSSYTNITPWYDRISKLPQVQKALKTWT 177 (1175)
Q Consensus 138 ~~~~~~----~-~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~~ 177 (1175)
.+.... . ........+|.|.+|.++|.++|.+++++...+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e 213 (231)
T KOG0406|consen 169 ERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSE 213 (231)
T ss_pred HHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHH
Confidence 665411 1 112346789999999999999999999876553
|
|
| >KOG0867|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-19 Score=193.94 Aligned_cols=175 Identities=24% Similarity=0.378 Sum_probs=147.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.|+++++++++++++|++|+.+.+++..++ +||+|+||+|+ ++|..|+||.||++||+
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~-d~~~~l~eS~AI~~Yl~~ky~~~ 81 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALE-DGGLTLWESHAILRYLAEKYGPL 81 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEe-cCCeEEeeHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999999988887643 78999999996 77999999999999985
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhh--hhhhc---CC--------CCchHHHHHHHHHHHHHhc-CCcccCCCCC
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSV--LSFFD---NP--------KVLPDNLKTKLNVLNEAIS-NSFLIENSTT 127 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~--~~~~~---~g--------~~~~~~l~~~L~~Le~~L~-~~fLvG~~lT 127 (1175)
|.+...++.+++|+.|..+.+.+.. ..++. .+ ......+...++.+|.+|. +.|++|+++|
T Consensus 82 ~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~t 161 (226)
T KOG0867|consen 82 GGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQLT 161 (226)
T ss_pred CcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCccc
Confidence 5567889999999999999998873 22221 11 2345688999999999999 9999999999
Q ss_pred ccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 128 VADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 128 lADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+||+.+.+.+..+...........+||++.+|++++..+|..++.....
T Consensus 162 lADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~~ 210 (226)
T KOG0867|consen 162 LADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKRPAYEEANEKG 210 (226)
T ss_pred HHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhCccHHHHHHHH
Confidence 9999999999986321112456789999999999999999988876554
|
|
| >PRK10387 glutaredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-19 Score=190.51 Aligned_cols=165 Identities=20% Similarity=0.228 Sum_probs=128.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc---CCC---h
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS---KFD---T 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p~~---~ 70 (1175)
|+||+++.||++++++++|+++|++|+.+.++..+ ..++|.|+||+|+.+||.+|+||.||++||. |.. +
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~~ 80 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLTG 80 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCCC
Confidence 89999999999999999999999999998886543 2367899999997688999999999999997 221 1
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhc-----------------------CC---------CCchHHHHHHHHHHHHHhcC
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFD-----------------------NP---------KVLPDNLKTKLNVLNEAISN 118 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~-----------------------~g---------~~~~~~l~~~L~~Le~~L~~ 118 (1175)
.+++.+++|+.+....+.+.+...+. .| ....+.+.+.|..||++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 160 (210)
T PRK10387 81 KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDPLIVK 160 (210)
T ss_pred cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHHHhcC
Confidence 35778899998876555433321110 00 01234678889999998888
Q ss_pred CcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHH
Q psy7266 119 SFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169 (1175)
Q Consensus 119 ~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~ 169 (1175)
+||+|+++|+|||++++.+.++..... ...+|+|.+|++||.++|.+
T Consensus 161 ~~l~G~~~s~ADi~l~~~l~~~~~~~~----~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 161 PNAVNGELSTDDIHLFPILRNLTLVKG----IEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred ccccCCCCCHHHHHHHHHHhcceeecC----CCCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999998643211 12469999999999998865
|
|
| >PTZ00057 glutathione s-transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=186.59 Aligned_cols=172 Identities=13% Similarity=0.131 Sum_probs=126.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-c----------ccCCCCcccEEEeCCCcEEeCHHHHHHHHcCC-
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-A----------RLLLSKTVPVLELDDGSQLFSANQSCLYLSKF- 68 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-~----------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p~- 68 (1175)
|+||+++.++++++|+++|+++|++|+.+.++... . .+||+|+||+|+ +||.+|+||.||++||+..
T Consensus 5 ~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~-~~~~~l~eS~AI~~YLa~~~ 83 (205)
T PTZ00057 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILE-MDNIIFAQSQAIVRYLSKKY 83 (205)
T ss_pred eEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEE-ECCEEEecHHHHHHHHHHHc
Confidence 68999999999999999999999999998775311 1 378999999996 6789999999999999721
Q ss_pred ---ChHHHHHHHHHHHHHhh-hchhhhhhhhcCC----CCchHHHHHHHHHHHHHhc-C--CcccCCCCCccchhHHHHH
Q psy7266 69 ---DTKNESAINQWLEWESV-ELFPSVLSFFDNP----KVLPDNLKTKLNVLNEAIS-N--SFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 69 ---~~~~~a~v~~wl~~~~~-~l~p~~~~~~~~g----~~~~~~l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~~~L 137 (1175)
......++..|+.+... .+...+....... ....+.+.+.|..||++|. + +||+|+++|+|||++++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~ 163 (205)
T PTZ00057 84 KICGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLY 163 (205)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHHHHHH
Confidence 11233444445444431 2222111110000 1123567888999999998 4 7999999999999999998
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
.++.... ......||+|.+|+++|.++|.+++++++
T Consensus 164 ~~~~~~~--~~~l~~~P~l~~~~~r~~~~P~~k~y~~~ 199 (205)
T PTZ00057 164 DDIETKY--PNSLKNFPLLKAHNEFISNLPNIKNYISN 199 (205)
T ss_pred HHHHHhC--hhhhccChhHHHHHHHHHhChHHHHHHHh
Confidence 7753211 23467899999999999999999999865
|
|
| >KOG0868|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.9e-19 Score=171.20 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=143.3
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
+||++..|..++|||++|.++|++|+.+.|++..+ ++||+++||+|+ .||.+|+||.||+.||.
T Consensus 7 iLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~-i~g~tl~eS~AII~YLeEt~P~p 85 (217)
T KOG0868|consen 7 ILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLV-IDGLTLTESLAIIEYLEETYPDP 85 (217)
T ss_pred hhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEE-ECCEEeehHHHHHHHHHhcCCCC
Confidence 68999999999999999999999999999998653 279999999995 99999999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhh--hhhhcCCCC--------chHHHHHHHHHHHHHhc---CCcccCCCCCccc
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSV--LSFFDNPKV--------LPDNLKTKLNVLNEAIS---NSFLIENSTTVAD 130 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~--~~~~~~g~~--------~~~~l~~~L~~Le~~L~---~~fLvG~~lTlAD 130 (1175)
|.++..|+.+++......+.++|.- ..+.+.++. +...+.+.+..||+.|. +.|.+||++|+||
T Consensus 86 pLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiAD 165 (217)
T KOG0868|consen 86 PLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIAD 165 (217)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehhh
Confidence 7788899999999998888888742 222222221 13467899999999998 8999999999999
Q ss_pred hhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 131 ICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 131 i~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
+++.+.++...+.. .....||.+.|..+.+...|.|+.++-
T Consensus 166 l~L~pqv~nA~rf~---vdl~PYPti~ri~e~l~elpaFq~ahP 206 (217)
T KOG0868|consen 166 LCLPPQVYNANRFH---VDLTPYPTITRINEELAELPAFQAAHP 206 (217)
T ss_pred hccchhhhhhhhcc---ccCCcCchHHHHHHHHHhCHHHHhcCC
Confidence 99999999874433 467899999999999999999997653
|
|
| >cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=166.17 Aligned_cols=128 Identities=37% Similarity=0.604 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q psy7266 646 NNSELLNNLGNFINRALSFIEKNYGSTIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQ 724 (1175)
Q Consensus 646 ~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~ 724 (1175)
+|++|++++||+++|+.+++.+.+++.+|.. .+...|+|++++++.+++++.++|++|+|+.|++.+++|++.+|+|++
T Consensus 1 ~n~~l~~~~gnll~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~~ 80 (129)
T cd07957 1 INSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYID 80 (129)
T ss_pred CcHHHHhhHhhHHHHHHHHHHHHcCCcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhc
Confidence 4778999999999999999999988877754 346679999999999999999999999999999999999999999999
Q ss_pred hcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 725 TQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 725 ~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
..+||.+.+++ +..++..+++++.++++.++++|+|||||+||+||++|
T Consensus 81 ~~kpw~~~~~~--~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 81 ETAPWKLAKEE--DPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred cCCCHHHHccC--CHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 99999887542 23456778899999999999999999999999999875
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. |
| >PLN02378 glutathione S-transferase DHAR1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=180.96 Aligned_cols=162 Identities=14% Similarity=0.191 Sum_probs=122.5
Q ss_pred cCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCHHHHHHHHc---C----CChHHH
Q psy7266 6 NRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSANQSCLYLS---K----FDTKNE 73 (1175)
Q Consensus 6 ~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p----~~~~~~ 73 (1175)
+..||++++|+++|.++|++|+.+.+++.... +||.|+||+|+ +||.+|+||.||++||. + .++.++
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~-~~~~~l~ES~aI~~YL~~~~~~~~l~~~~~~ 95 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLK-IDDKWVTDSDVIVGILEEKYPDPPLKTPAEF 95 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEE-ECCEEecCHHHHHHHHHHhCCCCCCCCHHHH
Confidence 45799999999999999999999999986533 79999999996 67789999999999997 2 234455
Q ss_pred HHHHHHHHHHhhhchhhhhhhhcC---CCCchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHHHHHHHhhC---C
Q psy7266 74 SAINQWLEWESVELFPSVLSFFDN---PKVLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWTCVYPLLSD---S 144 (1175)
Q Consensus 74 a~v~~wl~~~~~~l~p~~~~~~~~---g~~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~L~~~~~~---~ 144 (1175)
+.++.++. +.+..++.. .....+.+.+.|..||++|. ++|++|+++|+|||++++.+.++... .
T Consensus 96 a~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~ 168 (213)
T PLN02378 96 ASVGSNIF-------GTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHF 168 (213)
T ss_pred HHHHHHHH-------HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 55555433 222222211 11233567888999999997 68999999999999999998764311 1
Q ss_pred CCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 145 KVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 145 ~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
........||+|.+|+++|.++|++++++..
T Consensus 169 ~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~ 199 (213)
T PLN02378 169 KSWSVPESFPHVHNYMKTLFSLDSFEKTKTE 199 (213)
T ss_pred cCCCchhHhHHHHHHHHHHhcCCCeecccCC
Confidence 1112246899999999999999999987654
|
|
| >PLN02817 glutathione dehydrogenase (ascorbate) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=181.32 Aligned_cols=169 Identities=17% Similarity=0.213 Sum_probs=127.8
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---C----CChHHHH
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS---K----FDTKNES 74 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p----~~~~~~a 74 (1175)
..||++++++++|+++|++|+++.+++... .+||.|+||+|+. ||.+|+||.+|++||. | .++.+++
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~-d~~~L~ES~aI~~YL~e~~p~~~L~~~~era 149 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKL-DEKWVADSDVITQALEEKYPDPPLATPPEKA 149 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEE-CCEEEecHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 359999999999999999999999988652 3899999999974 5679999999999996 2 2456777
Q ss_pred HHHHHHHHHhhhchhhhhhhhcC---CCCchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHHHHHhhC---CCC
Q psy7266 75 AINQWLEWESVELFPSVLSFFDN---PKVLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCVYPLLSD---SKV 146 (1175)
Q Consensus 75 ~v~~wl~~~~~~l~p~~~~~~~~---g~~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L~~~~~~---~~~ 146 (1175)
.+++|+... +..++.. +....+.+...|..||++|. ++||+|+++|+|||++++.|.++... ...
T Consensus 150 ~i~~~l~~~-------~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~ 222 (265)
T PLN02817 150 SVGSKIFST-------FIGFLKSKDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHYKN 222 (265)
T ss_pred HHHHHHHHH-------HHHHhccCCcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 777765422 1112111 11223567888999999997 79999999999999999998765321 111
Q ss_pred CCCcccchhHHHHHHHHhcCHHHHHHHHHHHHHhccc
Q psy7266 147 RPLLSSYTNITPWYDRISKLPQVQKALKTWTEVLKGS 183 (1175)
Q Consensus 147 ~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~~~~~kg~ 183 (1175)
......||+|.+|+++|.++|+|+.++.....+..||
T Consensus 223 ~~i~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~ 259 (265)
T PLN02817 223 WSVPDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGW 259 (265)
T ss_pred CCccccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHh
Confidence 1224689999999999999999999876554444444
|
|
| >TIGR02182 GRXB Glutaredoxin, GrxB family | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-17 Score=175.42 Aligned_cols=162 Identities=17% Similarity=0.220 Sum_probs=122.0
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc---CCC---hH
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS---KFD---TK 71 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p~~---~~ 71 (1175)
+||++..||+|++|+++|.++|++|+.+.+...+ ..+||.|+||+|+.+||.+|+||.+|++||. |.. +.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~~~ 80 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLTGK 80 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCCCC
Confidence 5899999999999999999999999987765543 2478999999997689999999999999997 221 12
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc-----------------------CC---------CCchHHHHHHHHHHHHHhc-C
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD-----------------------NP---------KVLPDNLKTKLNVLNEAIS-N 118 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~-----------------------~g---------~~~~~~l~~~L~~Le~~L~-~ 118 (1175)
.+..+.+|+.+....+...+...+. .| ....+.+.+.|+.||++|. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 160 (209)
T TIGR02182 81 VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKLIDGP 160 (209)
T ss_pred ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHHHhCc
Confidence 4577888887755444332211110 00 1123467888999999999 9
Q ss_pred CcccCCCCCccchhHHHHHHHHhhCCCCCCCcccch-hHHHHHHHHhcCHHH
Q psy7266 119 SFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYT-NITPWYDRISKLPQV 169 (1175)
Q Consensus 119 ~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p-~L~~W~~rl~~~P~~ 169 (1175)
+|+.| .+|+|||++++.+.++..... ..+| ||.+|++||.+++.+
T Consensus 161 ~~l~g-~~TiADi~l~~~l~~~~~~~~-----~~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 161 NAVNG-ELSEDDILVFPLLRNLTLVAG-----INWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred cccCC-CCCHHHHHHHHHhcCeeeecC-----CCCChHHHHHHHHHHHHhCC
Confidence 99965 699999999999988532211 1256 999999999988754
|
This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress. |
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=187.70 Aligned_cols=290 Identities=16% Similarity=0.244 Sum_probs=171.5
Q ss_pred CCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHH
Q psy7266 274 VLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKY 353 (1175)
Q Consensus 274 ~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~ 353 (1175)
.+|... +.-++|..+|+|||+|||||++++++ .+.+|| +|+..|+.-+||....| .....++
T Consensus 93 ~L~~ae-~g~V~tRFaPsPtG~LHIGharaall-n~~~Ar-----~~~G~~iLRidDTDpk~-----------~R~~~e~ 154 (567)
T PRK04156 93 PLPNAE-KGKVVMRFAPNPSGPLHLGHARAAIL-NDEYAK-----MYGGKFILRFEDTDPRT-----------KRPDPEA 154 (567)
T ss_pred CCCCCC-CCeEEEEeCCCCCCCccHHHHHHHHH-HHHHHH-----HcCCEEEEeEccCCCCc-----------ccchHHH
Confidence 344432 34488889999999999999998887 999998 46677777777643322 3455677
Q ss_pred HHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCC
Q psy7266 354 FAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGD 433 (1175)
Q Consensus 354 ~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~ 433 (1175)
.+.|.++++|||+.+|..+++|+ |.+..+++..+|+++|++|.. +|...+ +... - ..|.
T Consensus 155 ~~~I~edL~wLGl~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C-----~cs~ee--~~~~-r-----------~~g~ 213 (567)
T PRK04156 155 YDMILEDLKWLGVKWDEVVIQSD--RLEIYYEYARKLIEMGGAYVC-----TCDPEE--FKEL-R-----------DAGK 213 (567)
T ss_pred HHHHHHHHHHcCCCCCCccCccc--CHHHHHHHHHHHHHcCCCccC-----CCCHHH--HHHH-H-----------hcCC
Confidence 78999999999999997767765 999999999999999999964 233321 1100 0 0011
Q ss_pred cccccCCccccc-------cccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCC
Q psy7266 434 QCDGCGQLINAI-------ELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLK 506 (1175)
Q Consensus 434 ~c~~~g~~~~~~-------el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~ 506 (1175)
.| .|... .+. ++..+.. .+.....| ++++ . ..-...++
T Consensus 214 ~~-~~R~~-~~ee~l~~~e~m~~G~~--~~g~~vlR------~k~d------------------------~-~~~n~~~r 258 (567)
T PRK04156 214 PC-PHRDK-SPEENLELWEKMLDGEY--KEGEAVVR------VKTD------------------------L-EHPNPSVR 258 (567)
T ss_pred CC-CCcCC-CHHHHHHHHHHhhcCcc--ccCCeEEE------EECc------------------------c-cCCCCCcc
Confidence 11 01000 000 0000000 00011111 1110 0 00013467
Q ss_pred cEeeeccCCCCcccCCCCCCCce-EEecCccccccCCCCCCCCcceEEEEe-eccccc---hhHhHHHHHHHHhCCCccc
Q psy7266 507 PRCITRDLKWGIPVPLPGFENKY-SLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVP---FHSIMFPATLVAAGDQYTK 581 (1175)
Q Consensus 507 dw~ISR~~~WG~piP~~~~e~~v-vWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~---fh~~~~pa~l~~~~~~~~~ 581 (1175)
||.+-|... .+-|.++ ++. +|.. +.+.....+....+.|++ |.|+.. .|.. ++..+| +..
T Consensus 259 D~v~~R~~~--~~h~~~G--d~~~i~Pt-----Y~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~----l~~~Lg--~~~ 323 (567)
T PRK04156 259 DWVAFRIVK--TPHPRVG--DKYRVWPT-----YNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY----IYDYFG--WEY 323 (567)
T ss_pred ccEEEEEcC--CCccccC--CCeEEEEE-----eccCceeeecCCCCCeEEcccccccChHHHHH----HHHHcC--CCC
Confidence 888877632 2333332 222 4422 111111001112223444 666542 3332 333333 544
Q ss_pred CeEEEeeceeecCCCcccccC-------C--------CccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHh
Q psy7266 582 VNHIMATEYLNYEDGKFSKSR-------G--------TGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKN 646 (1175)
Q Consensus 582 p~~i~~~g~l~~~G~KMSKS~-------G--------N~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~ 646 (1175)
| .+.++++|+.+|.|||||+ | +..+...+.+.||.++++|.|++..+....|..|+|+.|.. .
T Consensus 324 P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~-~ 401 (567)
T PRK04156 324 P-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYA-I 401 (567)
T ss_pred c-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH-H
Confidence 4 5578889999999999999 4 23566778888999999999999887777899999999875 4
Q ss_pred hHHHHHHH
Q psy7266 647 NSELLNNL 654 (1175)
Q Consensus 647 n~~l~~~l 654 (1175)
|++.++..
T Consensus 402 nr~~ld~~ 409 (567)
T PRK04156 402 NRKLIDPI 409 (567)
T ss_pred HHHHHhcc
Confidence 55544433
|
|
| >TIGR00862 O-ClC intracellular chloride channel protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-17 Score=175.10 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=120.9
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---CCC--hHHHHHH
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS---KFD--TKNESAI 76 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p~~--~~~~a~v 76 (1175)
+.||++++++++|.++|++|+++.+++... .+||.|+||+|+ ++|.+|+||.+|++||. +.. +... -
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~-~~g~~l~ES~aI~eYL~e~~~~~~~p~l~--p 93 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLT-YNTEVKTDVNKIEEFLEETLCPPRYPKLS--P 93 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEE-ECCEEeecHHHHHHHHHHHcCCCCCCCCC--C
Confidence 578999999999999999999999998763 279999999996 68899999999999997 210 1000 0
Q ss_pred HHHHHHHh-hhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHhc-------------------CCcccCCCCCccch
Q psy7266 77 NQWLEWES-VELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAIS-------------------NSFLIENSTTVADI 131 (1175)
Q Consensus 77 ~~wl~~~~-~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L~-------------------~~fLvG~~lTlADi 131 (1175)
..|..+.. ..+++.+..++.... .....+.+.|..||++|. ++||.|+++|+|||
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~ 173 (236)
T TIGR00862 94 KHPESNTAGLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADC 173 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhhH
Confidence 01111111 124444433332111 112347889999999984 58999999999999
Q ss_pred hHHHHHHHHhhC---CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 132 CIWTCVYPLLSD---SKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 132 ~l~~~L~~~~~~---~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++++.|.++... .........||+|.+|++++.++|+|+.++..-
T Consensus 174 ~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~ 221 (236)
T TIGR00862 174 NLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDD 221 (236)
T ss_pred HHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCCh
Confidence 999999886521 111123688999999999999999999975433
|
These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney. |
| >KOG1695|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-16 Score=163.09 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=140.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFD 69 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~ 69 (1175)
++|++++..+.+..+|+++++.|++||.+.+...+ ....|+|++|+|. .||..|.+|.||+|||+ +.+
T Consensus 4 ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~-vDg~~i~QS~AI~RyLArk~gl~Gkt 82 (206)
T KOG1695|consen 4 YKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLE-VDGKKLVQSRAILRYLARKFGLAGKT 82 (206)
T ss_pred eEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEe-ECCEeeccHHHHHHHHHHHhCcCCCC
Confidence 58999999999999999999999999999988876 2245999999995 67999999999999996 889
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhc---CCCCc-------hHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHHH
Q psy7266 70 TKNESAINQWLEWESVELFPSVLSFFD---NPKVL-------PDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWTC 136 (1175)
Q Consensus 70 ~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g~~~-------~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~ 136 (1175)
+.+.+++|+..+-........+...+. .|... .......+..+++.|. +.||+|+++|+||++++..
T Consensus 83 ~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~e~ 162 (206)
T KOG1695|consen 83 EEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLVIAEH 162 (206)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHHHHHHH
Confidence 999999988877655444332333322 23321 2255778899999998 5799999999999999999
Q ss_pred HHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 137 VYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 137 L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+..+... ........+|+|.++..++.++|.+++.++.
T Consensus 163 l~~l~~~-~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~ 200 (206)
T KOG1695|consen 163 LDTLEEL-LDPSALDHFPKLKAFKERVSSIPNIKKYLES 200 (206)
T ss_pred HHHHHHh-cCchhhccChHHHHHHHHHhcCchHHHHHhc
Confidence 9987542 2334567889999999999999999998865
|
|
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-16 Score=184.53 Aligned_cols=253 Identities=16% Similarity=0.230 Sum_probs=157.3
Q ss_pred CCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH-------H---------
Q psy7266 278 PNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL-------E--------- 341 (1175)
Q Consensus 278 ~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~-------~--------- 341 (1175)
...++++|...-|||+|++||||+|+++| +|+++|.++..||+|.-.....|+|..+...+. +
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~ii-Gd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~ 95 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTII-GDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIK 95 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHH-HHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhh-hHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhccccccc
Confidence 35789999999999999999999999998 999999999999999999999999987754321 0
Q ss_pred ---------------cCC---Cc---------------------hhhHHH-HHHHHHHHHhhccccccccCCCCCHHHHH
Q psy7266 342 ---------------EGL---TP---------------------RQICDK-YFAIHREVYEWFEIDFDYFGRTSTPQQTE 381 (1175)
Q Consensus 342 ---------------~g~---~p---------------------~~~~~~-~~~~~~~~~~~lgi~~D~~~~T~~~~~~~ 381 (1175)
... .+ .+++.. +.+.+++.+.+|++.||.+...++..+..
T Consensus 96 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 96 HLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHCHHHHTT
T ss_pred chhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccchhhhhh
Confidence 000 00 011222 44567788999999999887555557888
Q ss_pred HHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEE
Q psy7266 382 IVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV 461 (1175)
Q Consensus 382 ~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~ 461 (1175)
.+..++..|.++|++|+.+...+.... .+|+. .+.+.
T Consensus 176 ~v~~vl~~L~e~g~~~~~dGa~~i~~~---------------------~~g~~----------------------k~~Vl 212 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYESDGALWIDLT---------------------KFGDD----------------------KDRVL 212 (354)
T ss_dssp HHHHHHHHHHCTTTEEEETTEEEEEGC---------------------CTSTS----------------------S-EEE
T ss_pred HHHHHHHHHHhCCcEEecCCcEEEech---------------------hcCCC----------------------CcceE
Confidence 899999999999999986544432221 01110 11111
Q ss_pred eecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccC
Q psy7266 462 KSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFL 541 (1175)
Q Consensus 462 ~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~w 541 (1175)
+.+ .+......+.+.....+.. .+
T Consensus 213 ~ks---------------------DGt~~Y~trDiA~~~~r~~-----------------------------------~~ 236 (354)
T PF00750_consen 213 RKS---------------------DGTSTYLTRDIAYHLYRFE-----------------------------------EY 236 (354)
T ss_dssp EET---------------------TSEB-HHHHHHHHHHHHHC-----------------------------------CS
T ss_pred EcC---------------------CCceEEEcchHHHHHHHHh-----------------------------------hh
Confidence 111 1123334444443333200 01
Q ss_pred CCCCCCCcceEEEEeecccc-chhHhHHHHHHHHhCCC-cccCeEEEeeceee-cCCC-cccccCCCccCchhhhhc---
Q psy7266 542 PTATPQSKITLYQFMAKDNV-PFHSIMFPATLVAAGDQ-YTKVNHIMATEYLN-YEDG-KFSKSRGTGVFGNNAKDT--- 614 (1175)
Q Consensus 542 p~~~~~~~v~~~~~~GkD~i-~fh~~~~pa~l~~~~~~-~~~p~~i~~~g~l~-~~G~-KMSKS~GN~v~~~d~i~~--- 614 (1175)
..| .+++++|.||. .|+.++ +++..+|.. ....-..+..|+++ .+|+ |||+++||+|+++|+++.
T Consensus 237 ~~d------~~iyV~~~~q~~hf~~l~--~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~ 308 (354)
T PF00750_consen 237 GFD------KIIYVVGADQKGHFKQLF--AILEALGYDPEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVE 308 (354)
T ss_dssp S-S------EEEEEEEGGGHHHHHHHH--HHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHH
T ss_pred ccc------cEEEEecCchhhHHHHHH--HHHHHhCCCCCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHH
Confidence 122 45899999986 344443 455555531 11222345677774 5665 799999999999999981
Q ss_pred ----------------------CCCchhHHHHHHhcCCCCCCccccH
Q psy7266 615 ----------------------GLPADIFRFYLLYVRPENQDTSFSW 639 (1175)
Q Consensus 615 ----------------------~~gaDalR~~ll~~~~~~~D~~f~~ 639 (1175)
.+|.+++||++++..+ ..|+.|+|
T Consensus 309 ~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~-~~~~~Fdw 354 (354)
T PF00750_consen 309 RALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKR-NKDYVFDW 354 (354)
T ss_dssp HHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-T-TS-EEEEC
T ss_pred HHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccC-CCCceecC
Confidence 2677889999988555 47888886
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=148.05 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhc
Q psy7266 648 SELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYI-LNISRYCNQYMQTQ 726 (1175)
Q Consensus 648 ~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i-~~~~~~~n~yi~~~ 726 (1175)
.+++++++|+++|+.+++.+.+++.+|...++..|+|++++++.+++++.++|++|+|+.|++.+ +.|.+.+|+|++..
T Consensus 3 ~~~~~~~~~~l~R~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~~ 82 (117)
T cd07959 3 EEEANSAILRLERFYELAEELIETEGELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERG 82 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999998776655544456789999999999999999999999999999997 99999999999998
Q ss_pred CcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 727 QPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 727 kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
+||. ...++.++++.+++||+|||||+||+||++|
T Consensus 83 ~~~~--------------~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 83 GAGM--------------NKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred Cccc--------------hHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 9870 1235689999999999999999999999875
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-16 Score=177.20 Aligned_cols=266 Identities=17% Similarity=0.285 Sum_probs=120.9
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcch--------HHH-----------HHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGT--------ATE-----------TKAL 340 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~--------~ie-----------~~a~ 340 (1175)
+..++|-++ -.|||.+||||++..+. +|+++|-+|.+|++|.+++.+|++.- |-. ..-.
T Consensus 22 ~~~~v~~sG-~sPSG~~HIGn~rEv~~-~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPd 99 (360)
T PF01921_consen 22 KEPYVFASG-ISPSGLPHIGNFREVLR-ADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPD 99 (360)
T ss_dssp -SEEEEEEE-E--SS---HHHHHHHHH-HHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-
T ss_pred CccEEEecC-CCCCCCcccccccchhh-HHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCC
Confidence 344555555 59999999999997665 99999999999999999999999842 111 0001
Q ss_pred HcCCCchhhHHHHHHHHHHHHhhccccccccCCCC---CHHHHHHHHHHHHHHHHcCCEEec----eEEEeeeCCCCccc
Q psy7266 341 EEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTS---TPQQTEIVQHLFDRVHKAGFTSSA----SVEQLHCAQCDRFL 413 (1175)
Q Consensus 341 ~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~---~~~~~~~v~~~f~~L~~~G~iy~~----~~~~~~c~~~~~~l 413 (1175)
-.|. ...++++|...+.+.|+.|||.++..+.|. +..|.+.+..++.+-.+-.-|... .....|+|
T Consensus 100 P~G~-~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~~~~y~P------ 172 (360)
T PF01921_consen 100 PFGC-HESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRERPETYSP------ 172 (360)
T ss_dssp TTSS-SSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT--TT--S------
T ss_pred CCCC-CccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcCCCCCeee------
Confidence 1122 345789999999999999999998876442 334555554443332221111100 01111111
Q ss_pred ccceecccCCCccccCCCCCcccccCCcccc--------ccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhc
Q psy7266 414 ADRFVEGVCPKCRYEDARGDQCDGCGQLINA--------IELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSET 485 (1175)
Q Consensus 414 ~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~--------~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~ 485 (1175)
+--.|++||++... ...+..+|..||+.-+.-...-- .+|.---+
T Consensus 173 -----------------f~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~-gKL~WkvD--------- 225 (360)
T PF01921_consen 173 -----------------FLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGN-GKLQWKVD--------- 225 (360)
T ss_dssp -----------------EEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT--EEE-HHHH---------
T ss_pred -----------------eeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCc-ccccCCCc---------
Confidence 11234444543211 11123456667766654322211 22210000
Q ss_pred CCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhH
Q psy7266 486 SDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHS 565 (1175)
Q Consensus 486 ~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~ 565 (1175)
|+ ..|.. ...+ +-..||||..--.
T Consensus 226 ---W~-------mRW~~--------------------------------------lgVd--------fEp~GKDH~~~GG 249 (360)
T PF01921_consen 226 ---WP-------MRWAA--------------------------------------LGVD--------FEPFGKDHASPGG 249 (360)
T ss_dssp ---HH-------HHHHH--------------------------------------TT-S--------EEEEEHHHHCTTS
T ss_pred ---Ch-------hhhhh--------------------------------------cCce--------eccCCCccCCCCC
Confidence 11 12321 1112 5678999876222
Q ss_pred hHHHHHHHH-hCCCcccCeEEEeeceeecCCC-cccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHH
Q psy7266 566 IMFPATLVA-AGDQYTKVNHIMATEYLNYEDG-KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQ 640 (1175)
Q Consensus 566 ~~~pa~l~~-~~~~~~~p~~i~~~g~l~~~G~-KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~ 640 (1175)
.+-.+--.+ --++..+|. -+..+|++.+|+ |||||+||+|++.|+++- +.+++|||++++..|. +..+|+.+
T Consensus 250 S~d~~~~I~~~i~g~~pP~-~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~-~~PE~lr~l~~~~~P~-~~~~~~~~ 323 (360)
T PF01921_consen 250 SYDTSKRIAREILGYEPPV-PFPYEFFLDKGGGKMSSSKGNGITPEEWLEY-APPESLRYLMARTKPN-KAKDFSFD 323 (360)
T ss_dssp HHHHHHHHHHHCC-----E-EEEE--EEES--------------HHHHHTT-S-HHHHHHHHHCS-TT-S-EEE--S
T ss_pred ChhhHHHHHHHHhCCCCCC-CCCeeEEEeCCCcccccCCCCccCHHHHHHh-cCHHHHHHHHcccCCC-cceEeccC
Confidence 222222222 112455554 456788877776 999999999999999996 8999999999985554 56666666
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-15 Score=168.73 Aligned_cols=267 Identities=16% Similarity=0.329 Sum_probs=152.7
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcch--------HH-HHHHHHcCC-------
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGT--------AT-ETKALEEGL------- 344 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~--------~i-e~~a~~~g~------- 344 (1175)
..++|-++ -.|||.+|||+++..+ .+|+++|-+|.+|+.|.+++=+|++.- |- +...+-.|.
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~-t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPd 96 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVL-TADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPD 96 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHH-HHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCC
Confidence 34555555 5999999999999755 599999999999999999999999842 11 111112222
Q ss_pred ---CchhhHHHHHHHHHHHHhhccccccccCCCC---CHHHHHHHHHHHHHHHHcCCE---EeceEEEeeeCCCCccccc
Q psy7266 345 ---TPRQICDKYFAIHREVYEWFEIDFDYFGRTS---TPQQTEIVQHLFDRVHKAGFT---SSASVEQLHCAQCDRFLAD 415 (1175)
Q Consensus 345 ---~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~---~~~~~~~v~~~f~~L~~~G~i---y~~~~~~~~c~~~~~~l~d 415 (1175)
.+..++++|...|.+.++.|||.+.+.+.|. .-.|.+.+..++.+-.+-.-| |++. .+.+
T Consensus 97 P~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~-----------~~~e 165 (521)
T COG1384 97 PFGCCDSYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR-----------ELEE 165 (521)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC-----------cccC
Confidence 2345778888899999999999999875431 223444444443333221111 1111 1111
Q ss_pred ceecccCCCccccCCCCCcccccCCccccc--c-----ccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC
Q psy7266 416 RFVEGVCPKCRYEDARGDQCDGCGQLINAI--E-----LIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ 488 (1175)
Q Consensus 416 ~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~--e-----l~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~ 488 (1175)
.+. .+-..|++||+..... + -+..+|. ||+.-+. ++. ..
T Consensus 166 ~~~-----------P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce-~Gh~g~v--------~ir-----------~g--- 211 (521)
T COG1384 166 DWS-----------PFMPICEKCGRILTTPVIEWDGEGTVEYRCE-CGHEGEV--------DIR-----------GG--- 211 (521)
T ss_pred Cce-----------eccccccccCCcceeEEEEecCCceEEEEec-CCcccee--------ecc-----------cc---
Confidence 111 1233566666643211 0 1111222 3332221 100 00
Q ss_pred CCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHH
Q psy7266 489 WSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMF 568 (1175)
Q Consensus 489 ~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~ 568 (1175)
.+ .+.|-+..|. +|+--. |+ +-..||||.---..|=
T Consensus 212 --------------~~--------KL~WRvdWp~----------------RW~~lg-----Vd-~EPfGKDH~a~ggSyd 247 (521)
T COG1384 212 --------------EG--------KLPWRVDWPM----------------RWAALG-----VD-FEPFGKDHAAAGGSYD 247 (521)
T ss_pred --------------Cc--------ccccCcCccc----------------hhhccC-----cc-cccCCcccccccCchH
Confidence 00 1223333332 223222 11 4567999985444443
Q ss_pred HHHHHHh-CCCcccCeEEEeeceeecCC-CcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHH
Q psy7266 569 PATLVAA-GDQYTKVNHIMATEYLNYED-GKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQD 641 (1175)
Q Consensus 569 pa~l~~~-~~~~~~p~~i~~~g~l~~~G-~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~ 641 (1175)
.+...+- -+++.+|..+ ..+|+.++| +|||||+||+|.+.|+++- ++++.|||++++..|. +..+|+.+.
T Consensus 248 tg~~I~~ei~g~~pP~~~-~YE~i~lkg~~~mSsSkG~~i~~~dwlev-~~pE~lry~~~r~kP~-r~~~~d~~~ 319 (521)
T COG1384 248 TGKRIAREIFGYEPPVPF-VYEWILLKGGGKMSSSKGNVISLSDWLEV-APPEVLRYLIARTKPN-RHIDFDFDL 319 (521)
T ss_pred HHHHHHHHhcCCCCCCCC-ceEEEEecCCcccccCCCcEEcHHHHHHh-cCHhHeeeeeeecCCC-cceecCCCC
Confidence 3333322 1245556544 577887666 8999999999999999997 8999999999986554 445555443
|
|
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=150.91 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=73.7
Q ss_pred EEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 285 i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
|+.+.|||||.+||||+++.++ +|+++||+|++|++|.+++|+|++|.++...+.+.+.+++++++.+.+.|+++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~-~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVT-FDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHH-HHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999998766 9999999999999999999999999999999999999999999999999999998
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-15 Score=173.62 Aligned_cols=283 Identities=15% Similarity=0.161 Sum_probs=163.3
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
.-++|..+|.|||+|||||++++++ +..+||-+ .|. |+.=+ ++++|.....+|.+.|.+++
T Consensus 10 g~v~tRFAPsPtG~LHiGharaAll-n~l~Ar~~--gG~---~iLRi-------------EDTDp~R~~~e~~~~I~~dL 70 (523)
T PLN03233 10 GQIVTRFPPEPSGYLHIGHAKAALL-NDYYARRY--KGR---LILRF-------------DDTNPSKEKAEFEESIIEDL 70 (523)
T ss_pred CeEEEeeCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEE-------------CCCCCCccchHHHHHHHHHH
Confidence 3489999999999999999998887 99999853 333 33333 45788888899999999999
Q ss_pred hhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcc-cccceecccCCCccccCCCCCcccccCC
Q psy7266 362 EWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRF-LADRFVEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 362 ~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~-l~d~~V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
+|||+.+|..+++++ |.+..+++..+|+++|++|.. +|...+-- .......+.|-....+.
T Consensus 71 ~WLGl~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C-----~cs~eel~~~r~~~~~~~~R~~s~ee----------- 132 (523)
T PLN03233 71 GKIEIKPDSVSFTSD--YFEPIRCYAIILIEEGLAYMD-----DTPQEEMKKERADRAESKHRNQSPEE----------- 132 (523)
T ss_pred HHhCCCCCCCccccc--cHHHHHHHHHHHHHcCCeEec-----CCCHHHHHHHHhhhccCccccCCHHH-----------
Confidence 999999997666665 999999999999999999975 34432110 00000011110000000
Q ss_pred ccccccccCCccc--CCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCc
Q psy7266 441 LINAIELIQPRCK--QCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGI 518 (1175)
Q Consensus 441 ~~~~~el~~~~c~--r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~ 518 (1175)
..++-...|. .-+.....|..- ++.. .... ++||.|=|... +
T Consensus 133 ---~l~~~~~m~~G~~~~~~~~lR~K~----d~~~---------~n~~------------------~~D~Vi~R~d~--~ 176 (523)
T PLN03233 133 ---ALEMFKEMCSGKEEGGAWCLRAKI----DMQS---------DNGT------------------LRDPVLFRQNT--T 176 (523)
T ss_pred ---HHHHHHHHhcccccCCCeEEEEeC----cccC---------CCCC------------------CcCCEEEEEcC--C
Confidence 0000000010 011222222111 1100 1111 12334444321 1
Q ss_pred ccCCCCCCCce-EEecCccccccCCCCCCCCcceEEEEe-eccccc---hhHhHHHHHHHHhCCCcccCeEEEeeceeec
Q psy7266 519 PVPLPGFENKY-SLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVP---FHSIMFPATLVAAGDQYTKVNHIMATEYLNY 593 (1175)
Q Consensus 519 piP~~~~e~~v-vWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~---fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~ 593 (1175)
|-|-.+ +++ +|.. +-+.....+....+.|++ |.|++. .|.. ++.++| +..|.. ...+.++.
T Consensus 177 ~h~~~G--d~~~~~Pt-----Y~fA~~VDD~l~gITHviRg~E~~~~t~~q~~----l~~aLg--~~~P~~-~~f~rln~ 242 (523)
T PLN03233 177 PHHRSG--TAYKAYPT-----YDLACPIVDSIEGVTHALRTTEYDDRDAQFFW----IQKALG--LRRPRI-HAFARMNF 242 (523)
T ss_pred cccccC--Ccccceec-----cCCceeeeccccCCCeEEechhhhcCCHHHHH----HHHHhC--CCCCee-eeeEEECC
Confidence 111110 000 0000 001110001222334555 777663 3333 334444 566765 44677889
Q ss_pred CCCcccccC------CCcc---------CchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHH
Q psy7266 594 EDGKFSKSR------GTGV---------FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLN 652 (1175)
Q Consensus 594 ~G~KMSKS~------GN~v---------~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~ 652 (1175)
.|.||||++ .+.| +...+.++||.++++|-|++..+....|..++|+.|.. .|++.++
T Consensus 243 ~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~-~nR~~ld 315 (523)
T PLN03233 243 MNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWA-ENKKEID 315 (523)
T ss_pred CCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHH-HHHHHhc
Confidence 999999997 3444 46778889999999999999999888899999999875 3444333
|
|
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.7e-14 Score=148.80 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=78.7
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||++||||++++++ .++++| ++++.|+.-+||...+.. .....+.+.|.++++|
T Consensus 2 v~~RfaPsPtG~lHiG~~rtal~-~~l~Ar-----~~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~w 64 (240)
T cd09287 2 VVMRFAPNPNGPLHLGHARAAIL-NGEYAK-----MYGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEW 64 (240)
T ss_pred ceEeCCCCCCCCccHHHHHHHHH-HHHHHH-----HcCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHH
Confidence 46788899999999999998887 999998 678888888887643321 1456667779999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEe
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSS 398 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 398 (1175)
||+.+|...+.+ ++.+..+++.++|.++|++|.
T Consensus 65 LGl~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 65 LGVKWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred cCCCCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 999888655555 489999999999999999996
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >KOG4420|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-14 Score=147.57 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=129.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEeCCCcEEeCHHHHHHHHcC-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLELDDGSQLFSANQSCLYLSK----- 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p----- 67 (1175)
|.||++|.|..+++||+++.++||+++...|++..++ +||.|.||||+ ++..+|.++.-|+.||..
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~-~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLI-HGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEe-cCCeecccHHHHHHHHHHhhccc
Confidence 6799999999999999999999999999999988754 78999999995 888999999999999851
Q ss_pred -----C-ChH--HHHHHHHHHH-------HHhhh-chhhhhh------------hhc-----------C--CC-------
Q psy7266 68 -----F-DTK--NESAINQWLE-------WESVE-LFPSVLS------------FFD-----------N--PK------- 99 (1175)
Q Consensus 68 -----~-~~~--~~a~v~~wl~-------~~~~~-l~p~~~~------------~~~-----------~--g~------- 99 (1175)
. +.. .+....+-+. |..+. +.|.+.. .+. . ..
T Consensus 106 r~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~a 185 (325)
T KOG4420|consen 106 RVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLA 185 (325)
T ss_pred ccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHH
Confidence 1 111 1111111000 11100 0111100 000 0 00
Q ss_pred -------------------CchHHHHHHHHHHHHHhc-----CCcccCCCCCccchhHHHHHHHHhhCCCCC--CCcccc
Q psy7266 100 -------------------VLPDNLKTKLNVLNEAIS-----NSFLIENSTTVADICIWTCVYPLLSDSKVR--PLLSSY 153 (1175)
Q Consensus 100 -------------------~~~~~l~~~L~~Le~~L~-----~~fLvG~~lTlADi~l~~~L~~~~~~~~~~--~~~~~~ 153 (1175)
+..+++...|+.+|..|. .+||+|++||+||+.+..+|+++....... ....+.
T Consensus 186 kqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gsr 265 (325)
T KOG4420|consen 186 KQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGSR 265 (325)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCCC
Confidence 123456777888888887 479999999999999999999986544432 223578
Q ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHHhc
Q psy7266 154 TNITPWYDRISKLPQVQKALKTWTEVLK 181 (1175)
Q Consensus 154 p~L~~W~~rl~~~P~~~~~l~~~~~~~k 181 (1175)
|||..||.|+..+++|.++++.+..++.
T Consensus 266 pnle~Yf~rvrrR~sf~kvlg~~fnilr 293 (325)
T KOG4420|consen 266 PNLESYFERVRRRFSFRKVLGDIFNILR 293 (325)
T ss_pred ccHHHHHHHHHhhhHHHHhhhhHHHHHH
Confidence 9999999999999999999998866554
|
|
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-14 Score=162.70 Aligned_cols=271 Identities=16% Similarity=0.201 Sum_probs=160.4
Q ss_pred EccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhcc
Q psy7266 286 TSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFE 365 (1175)
Q Consensus 286 ~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lg 365 (1175)
|...|.|||+|||||++++++ +..+||-+ .|.=++. + +++++.....++.+.|.++++|||
T Consensus 2 ~RFAPSPTG~LHiG~artAL~-n~l~Ar~~--gG~fiLR---i-------------EDTD~~R~~~e~~~~I~~~L~WlG 62 (433)
T PRK12410 2 LRFAPSPTGDMHIGNLRAAIF-NYIVAKQQ--NEDFLIR---I-------------EDTDKERNIEGKDKEILEILNLFG 62 (433)
T ss_pred CccCCCCCCcccHHHHHHHHH-HHHHHHHc--CCEEEEE---e-------------CcCCCCcCChHHHHHHHHHHHHcC
Confidence 345678999999999999887 88888853 3433332 3 446666677889999999999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCccccc-cee---cccCCCccccCCCCCcccccCCc
Q psy7266 366 IDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD-RFV---EGVCPKCRYEDARGDQCDGCGQL 441 (1175)
Q Consensus 366 i~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d-~~V---~g~cP~c~~~d~~G~~c~~~g~~ 441 (1175)
+++|--++.++ +.+.-+++..+|+++|.+|.. ||... -+.. +.. .|.-| .| .| .|..+
T Consensus 63 l~wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY~C-----~cs~e--el~~~r~~~~~~g~~~--~Y---~g----~cr~l 124 (433)
T PRK12410 63 ISWDKLVYQSE--NLKFHRQMAEKLLSEKKAFAC-----FCSEE--ELEAKKEKAKNEKKPY--RY---DG----TCENL 124 (433)
T ss_pred CCCCCCeehhc--cHHHHHHHHHHHHHcCCeeee-----cCCHH--HHHHHHHHHhhcCCCC--CC---Cc----hhhCC
Confidence 99997655554 778889999999999999964 34442 1111 000 01000 00 00 11111
Q ss_pred cccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccC
Q psy7266 442 INAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVP 521 (1175)
Q Consensus 442 ~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP 521 (1175)
...+. ...|.+.++| |+++. ... .|.+..+..+. +-...+.||.|-|.-. +|
T Consensus 125 -~~~e~-----~~~g~~~~iR------~k~p~---~~~--------~f~D~v~G~i~-~~~~~~~D~Vi~R~Dg----~P 176 (433)
T PRK12410 125 -EDDEV-----LNCNKPFVVR------LKKPN---HTM--------SFTDAIKGEVS-FEPDEIDSFVILRADK----TP 176 (433)
T ss_pred -CHhHH-----HhcCCCeEEE------EEcCC---Cce--------eeeeccceeEE-eccccCCCeEEEcCCC----Cc
Confidence 00000 1123333433 22221 000 01111111110 0014567999988733 45
Q ss_pred CCCCCCceEEecCccccccCCCCCCCCcceEEEEe-ecccc---chhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCC
Q psy7266 522 LPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNV---PFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDG 596 (1175)
Q Consensus 522 ~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i---~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~ 596 (1175)
.+++-.-| | +....+.|++ |.|++ +-|..++-+ + ++..|..+.++.++ +.+|+
T Consensus 177 tY~fA~vV--------------D--D~~mgIThViRG~d~l~~tp~Qi~Ly~a----L--g~~~pp~f~Hlpli~~~~g~ 234 (433)
T PRK12410 177 TYNFACAV--------------D--DMLYDISLIIRGEDHVSNTPKQILIREA----L--GYNKEITYAHLPIILNEEGK 234 (433)
T ss_pred cccccchh--------------c--hhhcCCCEEEechhhhhCcHHHHHHHHH----c--CCCCCCeEEEeeeeeCCCCC
Confidence 44311111 1 2344456777 88877 455555443 3 46655455555654 78999
Q ss_pred cccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHH
Q psy7266 597 KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLAT 644 (1175)
Q Consensus 597 KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~ 644 (1175)
||||+.|. +...++.+.||.+++++-||+..+....+--|+.+++.+
T Consensus 235 KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli~ 281 (433)
T PRK12410 235 KMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAIE 281 (433)
T ss_pred eeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHHH
Confidence 99999984 678889999999999999999876443355567666554
|
|
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-14 Score=171.63 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=77.1
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ ...+||.+ .|. |+.-+ ++++|.....+|.+.|.++++|
T Consensus 265 V~tRFaPsPtG~LHiGharaall-N~~~Ar~~--~G~---~~LRi-------------eDTdp~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFV-DFGLAKER--GGC---CYLRF-------------DDTNPEAEKKEYIDHIEEIVEW 325 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEe-------------cCCCCCccchHHHHHHHHHHHH
Confidence 78999999999999999998887 99999864 332 33333 4578888889999999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||+.+|..++++ .|.+...+...+|+++|++|..
T Consensus 326 LG~~~d~~~~qS--d~f~~~Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 326 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYVD 359 (788)
T ss_pred cCCCCCCccccc--HhHHHHHHHHHHHHHcCCeEec
Confidence 998877655555 4776667788899999999974
|
|
| >cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=134.09 Aligned_cols=108 Identities=16% Similarity=0.251 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 652 NNLGNFINRALSFIEKNYGSTIPE---ISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 652 ~~l~n~~~r~~~~~~~~~~~~~p~---~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
....||++|+..++.+++++.+|. ......|+|+++.++.+++++.++|++|+|++|++.+++|.+.+|+|++...|
T Consensus 7 ~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~~~p 86 (117)
T cd07958 7 EGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKKDAQ 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhccccc
Confidence 357888889888888776665553 23566899999999999999999999999999999999999999999876554
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 729 WVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 729 w~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
+++++.++++.++++|+|||||+|++||++|
T Consensus 87 ----------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 87 ----------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred ----------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 3456689999999999999999999999875
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=162.24 Aligned_cols=287 Identities=15% Similarity=0.255 Sum_probs=168.8
Q ss_pred CCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHH
Q psy7266 273 PVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDK 352 (1175)
Q Consensus 273 ~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~ 352 (1175)
+.+|.. ...-++|..+|.|||+|||||++++++ ++.+|| .|+..|+.-+|| ++|.....+
T Consensus 84 ~~L~~a-~~~~vvtRFaPsPtG~LHiGharaall-n~~~Ar-----~~~G~~iLRidD-------------TDp~R~~~e 143 (560)
T TIGR00463 84 IELPGA-KMGEVVMRFAPNPSGPLHIGHARAAIL-NQYFAK-----KYKGKLIIRFDD-------------TDPRRVKPE 143 (560)
T ss_pred CCCCCC-cCCeeEEEeCCCCCCCccHHHHHHHHH-HHHHHH-----hcCCEEEEEeCc-------------CCcccccHH
Confidence 445542 234589999999999999999998887 999997 345566666665 566666778
Q ss_pred HHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCC
Q psy7266 353 YFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARG 432 (1175)
Q Consensus 353 ~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G 432 (1175)
|.+.|.++++|||+.+|...++++ |.+...++..+|+++|++|.. +|...+ +...- ..|
T Consensus 144 ~~~~I~edL~wLGi~~d~~~~qSd--~~~~y~~~a~~Li~~G~AY~C-----~cs~ee--i~~~r------------~~g 202 (560)
T TIGR00463 144 AYDMILEDLDWLGVKGDEVVYQSD--RIEEYYDYCRKLIEMGKAYVC-----DCPPEE--FRELR------------NDG 202 (560)
T ss_pred HHHHHHHHHHHcCCCCCccccccc--cHHHHHHHHHHHHHcCCceee-----cCCHHH--HHHHH------------hCC
Confidence 999999999999999997767765 999999999999999999975 233311 10000 001
Q ss_pred CcccccCCcc-cc-----ccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCC
Q psy7266 433 DQCDGCGQLI-NA-----IELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLK 506 (1175)
Q Consensus 433 ~~c~~~g~~~-~~-----~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~ 506 (1175)
..| .|.... +. .++..+. -.+....+| ++++ + ..-...++
T Consensus 203 ~~~-~cR~~s~eenl~~fe~m~~g~--~~~~~~~lR------~K~d------------------------~-~~~n~~~r 248 (560)
T TIGR00463 203 VAC-ACRDRSVEENLEIWEEMLNGT--EEGGKVVVR------AKTD------------------------Y-KHKNPAIR 248 (560)
T ss_pred CCC-CccCCCHHHHHHHHHHHhccc--ccCCCeEEE------EECC------------------------C-cCCCcccc
Confidence 101 011000 00 0000000 001111111 1110 0 00113567
Q ss_pred cEeeeccCCCCcccCCCCCCCce-EEecCccccccCCCCCCCCcceEEEEe-eccccc---hhHhHHHHHHHHhCCCccc
Q psy7266 507 PRCITRDLKWGIPVPLPGFENKY-SLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVP---FHSIMFPATLVAAGDQYTK 581 (1175)
Q Consensus 507 dw~ISR~~~WG~piP~~~~e~~v-vWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~---fh~~~~pa~l~~~~~~~~~ 581 (1175)
||.|-|... .|-|..+ +++ +|.. |.---+.+ +....+.|++ |.|++. -|..+|-+ . ++.+
T Consensus 249 D~V~~R~~~--~~h~~~G--d~~~~~Pt---YdfA~~VD--D~l~gITHviRg~E~~~nT~rq~yl~~~----l--g~~~ 313 (560)
T TIGR00463 249 DWVIFRINK--TPHPRTG--DKYKVYPT---MDFSVPID--DHLLGVTHVLRGKDHIDNERKQQYIYMY----F--GWEL 313 (560)
T ss_pred CcEEEEecC--CCccccC--CEEEEEec---cccceEee--cccCCCCeEEechhhhcCCHHHHHHHHH----c--CCCC
Confidence 888888653 2323222 222 3321 00000111 1222234555 777664 45555533 2 2444
Q ss_pred CeEEEeeceeecC-CCcccccCC-------Cc--------cCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHH
Q psy7266 582 VNHIMATEYLNYE-DGKFSKSRG-------TG--------VFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATK 645 (1175)
Q Consensus 582 p~~i~~~g~l~~~-G~KMSKS~G-------N~--------v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~ 645 (1175)
| ...+++++..+ |.|+|||+. .+ .+...+...||.++++|-|++..+....|..++|+.|..
T Consensus 314 P-~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~- 391 (560)
T TIGR00463 314 P-EFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYA- 391 (560)
T ss_pred C-eEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHH-
Confidence 4 56667888655 559999873 11 234556678999999999999999888899999999864
Q ss_pred hhHHHH
Q psy7266 646 NNSELL 651 (1175)
Q Consensus 646 ~n~~l~ 651 (1175)
.|+..+
T Consensus 392 ~nr~~i 397 (560)
T TIGR00463 392 FNKKII 397 (560)
T ss_pred HHHHHh
Confidence 344433
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-13 Score=142.07 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=98.6
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q psy7266 638 SWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE------ISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRY 711 (1175)
Q Consensus 638 ~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~------~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~ 711 (1175)
+.+.+.+ ..++++++|| +.+|+.....+..+. ..+...|+|++++++.+++++.++|++|+|+.|++.
T Consensus 2 ~~~~~~~--~~~~~~Kl~N----~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~ 75 (180)
T cd07960 2 SDEILKQ--VAEAYRKIRN----TFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQA 75 (180)
T ss_pred CHHHHHH--HHHHHHHHHH----HHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444443 2446666666 455554443332111 235678999999999999999999999999999999
Q ss_pred HHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 712 ILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 712 i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
+++|+ ++||+|++..+||.+.... .+..+ ..+..++..+++.+++||+|||||+||+||++|+.
T Consensus 76 i~~f~~~~l~n~Yi~~~k~~~~~~~~-~~~~~-~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~ 141 (180)
T cd07960 76 LNNFCTVDLSAFYLDIIKDRLYCDAK-DSLER-RSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG 141 (180)
T ss_pred HHHHHHHHHHHHHHHhcccceecCCC-CCHHH-HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccc
Confidence 99997 5999999999999763211 11112 33455678889999999999999999999999975
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-14 Score=166.80 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=80.3
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
|+|..+|.|||+|||||++++++ +..+||.+ .|. |+.=+ ++++|.....++.+.|.++|+|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~-N~~~Ar~~--~G~---fiLRi-------------EDTD~~R~~~e~~~~I~~~L~W 70 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALL-NYLYARKY--GGK---FILRI-------------EDTDPERETPEAEDAILEDLEW 70 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHH-HHHHHHHh--CCE---EEEEe-------------cCCCCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999887 99999864 333 22222 5578888888999999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||+.+|- .++.| ++.+..+++..+|+++|++|..
T Consensus 71 LGl~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 71 LGLDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred cCCCCCCceeehh--hhHHHHHHHHHHHHHCCCeEEe
Confidence 9999998 45665 4999999999999999999964
|
|
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=158.40 Aligned_cols=277 Identities=16% Similarity=0.170 Sum_probs=160.4
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..+||- ++-.|+.-+|| +++....+.+.+.|.++|+|
T Consensus 3 vr~RFAPSPTG~lHiG~artAL~-n~l~Ar~-----~gG~fiLRIED-------------TD~~Rs~~~~~~~I~e~L~w 63 (445)
T PRK12558 3 VITRFAPSPTGYLHVGNARTALL-NWLYARK-----HGGKFILRIDD-------------TDLERSKQEYADAIAEDLKW 63 (445)
T ss_pred eeEEeCCCCCCcccHHHHHHHHH-HHHHHHH-----hCCEEEEEecc-------------CCcccchHHHHHHHHHHHHH
Confidence 56778899999999999998887 7777774 33345544544 45555668899999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccce---ecccCCCccccCCCCCcccccCC
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRF---VEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~---V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
|||.+|.+++.++ ..+.++.+..+|.++|++|.. ||...+-- ..+. -.|..|. | .. .|..
T Consensus 64 LGI~~De~y~QSe--r~~~y~~~~e~L~e~G~AY~C-----~Ct~eel~-~~r~~~~~~~~~~~--y----~~---~cr~ 126 (445)
T PRK12558 64 LGINWDRTFRQSD--RFDRYDEAAEKLKAAGRLYPC-----YETPEELE-LKRKIQLSRGLPPI--Y----DR---AALK 126 (445)
T ss_pred cCCCCCccccHHH--HHHHHHHHHHHHHHCCCEEEe-----cCchHHHH-HHHHHHHhCCCCCC--C----Cc---cccc
Confidence 9999997655443 456899999999999999975 45543210 0000 0111110 0 00 1211
Q ss_pred ccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCccc
Q psy7266 441 LINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPV 520 (1175)
Q Consensus 441 ~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~pi 520 (1175)
+. ..+.. .-...|.+.++| |++.. ....|....+..+. +-...+.|+.|=|.- | .
T Consensus 127 l~-~~~~~--~~~~~g~~~~iR------~k~~~-----------~~~~~~D~i~G~~~-~~~~~~~D~Vi~R~d--g--~ 181 (445)
T PRK12558 127 LT-EEEKA--ALEAEGRKPHWR------FKLDD-----------EPISWDDLIRGEQS-IDAASLSDPVLIRAD--G--S 181 (445)
T ss_pred CC-HHHHH--hHHhcCCCceEE------EecCC-----------CceEEEEEeeeEee-cccccCCCeEEEecC--C--C
Confidence 10 00000 000113333333 11110 00012221111110 001346788888864 3 3
Q ss_pred CCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-ecccc---chhHhHHHHHHHHhCCCcccCeEEEeecee-ecCC
Q psy7266 521 PLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNV---PFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYED 595 (1175)
Q Consensus 521 P~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i---~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G 595 (1175)
|.+++-.-| | +....+.|++ |.|++ +-|..++-+ + ++..|... +.+++ +.+|
T Consensus 182 PtY~fA~vV--------------D--D~~m~ITHViRG~d~l~~t~~q~~l~~a----l--g~~~P~f~-H~pli~~~~g 238 (445)
T PRK12558 182 YLYTLPSVV--------------D--DIDMGITHIIRGEDHVTNTAVQIQIFEA----L--GAKPPVFA-HLSLLTGADG 238 (445)
T ss_pred cccccccee--------------c--cccCCCCEEEechhhhhCCHHHHHHHHH----h--CCCCCeEE-EcccccCCCc
Confidence 655421111 1 2344456777 88876 455555444 3 36666444 34444 6789
Q ss_pred CcccccCCCccCchhhhhcCCCchhHHHHHHhcCCC-CCCccccHHHHHHH
Q psy7266 596 GKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPE-NQDTSFSWQDLATK 645 (1175)
Q Consensus 596 ~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~-~~D~~f~~~~~~~~ 645 (1175)
+|+||+.|. ++..++.+.||-+++++-||+..+.. +.+.-|+.+++.+.
T Consensus 239 ~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~~ 288 (445)
T PRK12558 239 KGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAES 288 (445)
T ss_pred ccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHHh
Confidence 999999885 68889999999999999999886532 33344788877643
|
|
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=161.52 Aligned_cols=276 Identities=12% Similarity=0.074 Sum_probs=159.9
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ +..+||.+ .|. |+.-+ ++++|.....+|.+.|.++++|
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~-n~~~Ar~~--~G~---~iLRi-------------eDTd~~r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICL-NFGLAQDY--GGK---CNLRF-------------DDTNPEKEDQEYVDSIKEDVRW 90 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEE-------------CCCCCCcCChHHHHHHHHHHHH
Confidence 78999999999999999999887 99999853 232 33333 4577888888999999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCcc
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLI 442 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~ 442 (1175)
||+.+|. .+++++ |.+...+...+|+++|++|.. +|...+-- ..+.-. ...|..|.......
T Consensus 91 LGi~~d~~~~~qS~--r~~~~y~~a~~Li~~G~AY~c-----~cs~eei~-~~R~~~---------~~~g~~~~~R~~s~ 153 (554)
T PRK05347 91 LGFDWSGELRYASD--YFDQLYEYAVELIKKGKAYVD-----DLSAEEIR-EYRGTL---------TEPGKNSPYRDRSV 153 (554)
T ss_pred cCCCCCCCceeeec--CHHHHHHHHHHHHHcCCEeeC-----CCCHHHHH-HHhhhh---------hhcCCCCCccCCCH
Confidence 9999964 344554 888888888999999999975 34432110 000000 01121111001100
Q ss_pred cc-----ccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCC
Q psy7266 443 NA-----IELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWG 517 (1175)
Q Consensus 443 ~~-----~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG 517 (1175)
+. .++..+... +...++|. +++ +.. + + -.++||.|-|...=
T Consensus 154 eenl~~~~~m~~G~~~--~g~~vlR~------Kid---------~~~-----~-n----------~~~rD~Vi~R~~~~- 199 (554)
T PRK05347 154 EENLDLFERMRAGEFP--EGSAVLRA------KID---------MAS-----P-N----------INMRDPVLYRIRHA- 199 (554)
T ss_pred HHHHHHHHHHHCCCCC--CCcEEEEE------Eee---------ccC-----C-C----------CCCCCCEEEEecCC-
Confidence 00 011111111 11223231 110 000 0 0 24678888875421
Q ss_pred cccCCCCCCCceEEecCccccccCCCC-----CCCCcceEEEEe-eccccchhHhHHHHHHHHhCCCcccCeEEEeecee
Q psy7266 518 IPVPLPGFENKYSLSSSPSLVQFLPTA-----TPQSKITLYQFM-AKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL 591 (1175)
Q Consensus 518 ~piP~~~~e~~vvWfds~~~~~~wp~~-----~~~~~v~~~~~~-GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l 591 (1175)
|=|-.+ ++. . .||.- ..+....+.|++ |.|+... +.....++.++| +..+-+++..+++
T Consensus 200 -~H~r~G--~k~--~-------iyPtYdfA~~vdD~l~gITHvlRg~E~~~~-t~~~~~i~~alg--~~~~P~~~~F~rl 264 (554)
T PRK05347 200 -HHHRTG--DKW--C-------IYPMYDFAHCISDAIEGITHSLCTLEFEDH-RPLYDWVLDNLP--IPPHPRQYEFSRL 264 (554)
T ss_pred -CCCccC--Cce--e-------eecCcCccceeeccccCCceEEeccccccC-hHHHHHHHHHcC--CCCCCceEEEEEE
Confidence 111111 000 0 02211 001222334555 6665532 121222344443 2212344556678
Q ss_pred ecCCCcccccCCC------cc---------CchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHH
Q psy7266 592 NYEDGKFSKSRGT------GV---------FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLAT 644 (1175)
Q Consensus 592 ~~~G~KMSKS~GN------~v---------~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~ 644 (1175)
+.+|.|||||++. .| +...+.++||.++|+|-|++..+....|..++|+.|..
T Consensus 265 n~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~ 332 (554)
T PRK05347 265 NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLES 332 (554)
T ss_pred CCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHH
Confidence 9999999999964 12 57778889999999999999998888899999998864
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=153.96 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=74.4
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|...|.|||+|||||++++.+ +..+||- ..|. |+.-+ +++++.....++.+.|.++++|
T Consensus 2 v~~RfAPsPtG~lHiG~~rtal~-n~l~Ar~--~~G~---~iLRi-------------eDtD~~R~~~~~~~~i~~~L~w 62 (470)
T TIGR00464 2 VRTRFAPSPTGYLHIGGARTALF-NYLFAKH--TGGE---FILRI-------------EDTDLERNIEEAEEAILEGLKW 62 (470)
T ss_pred ceEeeCCCCCCcccHHHHHHHHH-HHHHHHH--cCCE---EEEEe-------------CcCCCccCChHHHHHHHHHHHH
Confidence 46778889999999999998887 8888884 2333 33333 3466677778899999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|||.+|- .++.+ ++.+..+++..+|+++|++|..
T Consensus 63 lGl~~de~~~~QS--~r~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 63 LGISWDEGPYYQS--QRLDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred CCCCCCCCeeehh--CCHHHHHHHHHHHHHcCCEEec
Confidence 9999993 33444 3677888999999999999964
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-13 Score=132.52 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=98.3
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy7266 637 FSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTI-PEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNI 715 (1175)
Q Consensus 637 f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~-p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~ 715 (1175)
|+.+.+... ..+++.++|++..+..++. ..+... +.......|.++++.++.+++.+.++|++++|++|++.++++
T Consensus 1 ~~~~~~~~~--~~~l~k~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~ 77 (135)
T cd07962 1 FDEKRVEGG--RNFCNKLWNAARFVLMNLE-DDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEF 77 (135)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHccc-ccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455555432 3456667776553211100 111000 112345678999999999999999999999999999999999
Q ss_pred HH--HHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHc
Q psy7266 716 SR--YCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQL 775 (1175)
Q Consensus 716 ~~--~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L 775 (1175)
+. .+|+|++..+||.+. .+ ..++.++++++.++++.++++|+|||||+|++||++|
T Consensus 78 ~~~~~~N~Yi~~~~pW~~~-~~---~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 78 FWNDFCDWYLELVKPRLYG-ED---EEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHhHHHHHHhhHHHcC-CC---hHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 75 899999999999873 22 2256778889999999999999999999999999875
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. |
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=160.62 Aligned_cols=104 Identities=11% Similarity=0.158 Sum_probs=83.3
Q ss_pred CCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHH
Q psy7266 273 PVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDK 352 (1175)
Q Consensus 273 ~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~ 352 (1175)
+.+|... +.-++|..+|.|||+|||||++++++ +..+||-+ .|. |+.=+ ++++|.....+
T Consensus 43 ~~L~~a~-~~~v~tRFAPsPtGyLHIGharaAll-N~l~Ar~~--gG~---~iLRi-------------EDTDp~R~~~e 102 (601)
T PTZ00402 43 LQLTNAE-EGKVVTRFPPEASGFLHIGHAKAALI-NSMLADKY--KGK---LVFRF-------------DDTNPSKEKEH 102 (601)
T ss_pred ccCCCCC-CCeeEEeeCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEE-------------cCCCCcccCHH
Confidence 4455432 23489999999999999999998887 99999853 332 33333 45788888899
Q ss_pred HHHHHHHHHhhccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEe
Q psy7266 353 YFAIHREVYEWFEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSS 398 (1175)
Q Consensus 353 ~~~~~~~~~~~lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 398 (1175)
|.+.|.++++|||+.+|. .+++++ |.+..+++..+|+++|++|.
T Consensus 103 ~~d~IleDL~WLGl~wDe~~~~QSd--r~d~y~e~a~~Li~~G~AY~ 147 (601)
T PTZ00402 103 FEQAILDDLATLGVSWDVGPTYSSD--YMDLMYEKAEELIKKGLAYC 147 (601)
T ss_pred HHHHHHHHHHHCCCCCCCceeeccc--cHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999985 445554 99999999999999999994
|
|
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-13 Score=164.05 Aligned_cols=272 Identities=11% Similarity=0.075 Sum_probs=162.5
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ +..+||-+ .| .|+.-+ ++++|.....+|.+.|.++++|
T Consensus 32 v~tRFaPsPtG~lHiGhar~all-n~~~A~~~--~G---~~~LR~-------------eDTd~~r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILL-NFGIARDY--GG---RCHLRM-------------DDTNPETEDTEYVEAIKDDVRW 92 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHH-HHHHHHHh--CC---EEEEEe-------------CCCCCCcCChHHHHHHHHHHHH
Confidence 88999999999999999998887 88888743 23 333334 4578888888999999999999
Q ss_pred cccccccc-CCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCcc
Q psy7266 364 FEIDFDYF-GRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLI 442 (1175)
Q Consensus 364 lgi~~D~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~ 442 (1175)
||+.+|.- +++++ |.+..+++..+|+++|++|.. +|... ++.... +.....|.-|
T Consensus 93 LG~~wd~~~~~qS~--~~~~y~~~a~~Li~~G~aY~c-----~cs~e-------ei~~~r---~~~~~~g~~~------- 148 (771)
T PRK14703 93 LGFDWGEHLYYASD--YFERMYAYAEQLIKMGLAYVD-----SVSEE-------EIRELR---GTVTEPGTPS------- 148 (771)
T ss_pred cCCCCCCCceEeec--CHHHHHHHHHHHHHcCCcccC-----cCCHH-------HHHHHH---hhhhhcCCCC-------
Confidence 99999853 45664 999999999999999999974 23331 111000 0000011111
Q ss_pred ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCch---HHHHH-HHHhhcCCCcEeeeccCC---
Q psy7266 443 NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSN---ARVIC-KAWLKDGLKPRCITRDLK--- 515 (1175)
Q Consensus 443 ~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~---~~~~~-~~wl~~~l~dw~ISR~~~--- 515 (1175)
.| |. .+++ + ++..|. ....+ .|... .|..+ ...-...++||.|=|...
T Consensus 149 --------~~-R~-~s~e----e----~l~~~~-----~m~~G--~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H 203 (771)
T PRK14703 149 --------PY-RD-RSVE----E----NLDLFR-----RMRAG--EFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHH 203 (771)
T ss_pred --------CC-CC-CCHH----H----HHHHHH-----HHhCC--CCcCCCeEEEEEeeccCCcccCCCCEEEEEcCCCC
Confidence 11 10 0000 0 000011 11111 12110 11100 000113578999988642
Q ss_pred --CCcc---cCCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-ecccc---chhHhHHHHHHHHhCCCcccCeEEE
Q psy7266 516 --WGIP---VPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNV---PFHSIMFPATLVAAGDQYTKVNHIM 586 (1175)
Q Consensus 516 --WG~p---iP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i---~fh~~~~pa~l~~~~~~~~~p~~i~ 586 (1175)
.|.. .|.++ +.....+....+.|++ |.|+. +.|..+ +.+++ .+.+.-.++
T Consensus 204 ~~~Gd~~~i~PtYd----------------fa~~vdD~l~gITHvlRg~E~~~~~~~~~~l----~~~l~-~~~~~P~~~ 262 (771)
T PRK14703 204 YRTGDEWCIYPMYD----------------FAHPLEDAIEGVTHSICTLEFENNRAIYDWV----LDHLG-PWPPRPRQY 262 (771)
T ss_pred CCcCCCCCcCCCcc----------------ccceeeccccCCcEEEecHhhhhccHHHHHH----HHHhC-CCCCCccee
Confidence 2222 22221 1111011222334555 77665 344333 33333 133224666
Q ss_pred eeceeecCCCcccccC-------CCcc--------CchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHH
Q psy7266 587 ATEYLNYEDGKFSKSR-------GTGV--------FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLAT 644 (1175)
Q Consensus 587 ~~g~l~~~G~KMSKS~-------GN~v--------~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~ 644 (1175)
..|++++.|.|||||+ |-+- +...+.++||.++++|-|++..+....|..++|+.|..
T Consensus 263 ~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~ 335 (771)
T PRK14703 263 EFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEF 335 (771)
T ss_pred EEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHH
Confidence 7889999999999998 4331 45667888999999999999998888899999998875
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-13 Score=143.40 Aligned_cols=90 Identities=19% Similarity=0.316 Sum_probs=70.9
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..+||-+ .|. |+.-+ +++++.....++.+.|.++++|
T Consensus 2 v~~RFAPsPtG~lHlG~~r~al~-n~l~Ar~~--~G~---~iLRi-------------eDtD~~R~~~~~~~~I~~dL~w 62 (230)
T cd00418 2 VVTRFAPSPTGYLHIGHARTALF-NFAFARKY--GGK---FILRI-------------EDTDPERSRPEYVESILEDLKW 62 (230)
T ss_pred ceEEeCCCCCCcccHHHHHHHHH-HHHHHHHc--CCe---EEEEe-------------CcCCCCCCChHHHHHHHHHHHH
Confidence 46778899999999999998887 88888853 333 33333 3466667778899999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcC
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAG 394 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G 394 (1175)
||+.+|- .++.+ ++.+..++.+.+|.++|
T Consensus 63 lGl~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 63 LGLDWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred cCCCCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 9999996 33444 37888888999999998
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >cd00939 MetRS_RNA MetRS_RNA binding domain | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-14 Score=106.01 Aligned_cols=45 Identities=47% Similarity=0.678 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccC
Q psy7266 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGD 1151 (1175)
Q Consensus 1106 ~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~ 1151 (1175)
|.++|++|||+||+||+++ ++|++|+++|++||+||++|+++||.
T Consensus 1 l~~~I~~QGekVR~LKa~k-a~k~~i~~eV~~LL~LK~~~k~~tG~ 45 (45)
T cd00939 1 LEKEVAEQGNKVRKLKASK-ADKSVWQPEVNKLLDLKKQLALAEGK 45 (45)
T ss_pred ChHHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4678999999999999998 89999999999999999999999993
|
This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. |
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.9e-13 Score=140.83 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=76.5
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..+||-+ .|. |+.-+ +++++.....++.+.|.++++|
T Consensus 2 v~~RFAPsPtG~lHlG~~~~al~-~~l~Ar~~--~G~---~iLRi-------------eDtD~~R~~~~~~~~I~~dL~w 62 (238)
T cd00807 2 VVTRFPPEPNGYLHIGHAKAILL-NFGYAKKY--GGR---CNLRF-------------DDTNPEKEEEEYVDSIKEDVKW 62 (238)
T ss_pred ceEecCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEe-------------cCCCCcccchHHHHHHHHHHHH
Confidence 57788899999999999998887 88888753 333 33333 4567777788899999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEe
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSS 398 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 398 (1175)
||+.+|-..+.+ ++.+..++...+|.++|++|.
T Consensus 63 lGl~wD~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 63 LGIKPYKVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred cCCCCCCceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 999999544444 488999999999999999997
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=136.80 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=100.0
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-cCCC---CCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy7266 637 FSWQDLATKNNSELLNNLGNFINRALSFIEKN-YGST---IPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYI 712 (1175)
Q Consensus 637 f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~-~~~~---~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i 712 (1175)
||++.+... .+.+++++||.+..++..+... ++.. ++...+...|+|+++++++++..+.++|++|+|+.|++.+
T Consensus 1 ~s~~~v~~~-~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREV-VRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 677777543 3447778888664443321111 1111 1222357899999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 713 LNIS-RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 713 ~~~~-~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
+.|. ..+++|++..|+..+..+ . +. +......++..++..++++|+|||||+||+||++|+.
T Consensus 80 ~~f~~~~~~~Y~e~~K~~~~~~~-~-~~-~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 80 LEFIDELTNWYIRRNRKRFWGEE-G-DD-DKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHhhhhHhhhchHHhcCCC-C-ch-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 9995 556999999887543222 1 11 2234566778999999999999999999999999974
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.8e-13 Score=156.04 Aligned_cols=278 Identities=16% Similarity=0.216 Sum_probs=160.9
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..+||- ..|.=++ -+ +++++.....++.+.|.++|+|
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~-n~l~Ar~--~gG~fiL---RI-------------EDTD~~R~~~e~~~~I~~~L~W 106 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALF-NYLFARS--KGGKFVL---RI-------------EDTDLARSTKESEEAVLRDLKW 106 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHH-HHHHHHH--hCCEEEE---Ee-------------CcCCCCCCChHHHHHHHHHHHH
Confidence 88899999999999999999887 9999984 3344333 33 4466677788999999999999
Q ss_pred cccccccc---------CCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCccccc-cee--cccCCCccccCCC
Q psy7266 364 FEIDFDYF---------GRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD-RFV--EGVCPKCRYEDAR 431 (1175)
Q Consensus 364 lgi~~D~~---------~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d-~~V--~g~cP~c~~~d~~ 431 (1175)
|||.+|-- ++.+ ++.+.-+++..+|.++|++|.. ||...+ |.. +.. ...||. .|+
T Consensus 107 LGl~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~C-----fCs~ee--l~~~r~~~~~~~~~~-~Yd--- 173 (535)
T PLN02627 107 LGLDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYPC-----FCTDEE--LEAMKEEAELKKLPP-RYT--- 173 (535)
T ss_pred cCCCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeeec-----cCChHH--HHHHHHHHHhcCCCc-CCC---
Confidence 99999953 2233 4778889999999999999964 444421 110 000 001110 110
Q ss_pred CCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeee
Q psy7266 432 GDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCIT 511 (1175)
Q Consensus 432 G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~IS 511 (1175)
| .|..+. ..+. ......|.+..+| |+++.-. ...|.+..+..+. +-...+.|+.|-
T Consensus 174 ~----~cr~l~-~ee~--~~~~~~g~~~~iR------~k~p~~~----------~~~~~D~i~G~i~-~~~~~~~D~Vi~ 229 (535)
T PLN02627 174 G----KWATAS-DEEV--QAELAKGTPYTYR------FRVPKEG----------SVKIDDLIRGEVS-WNTDTLGDFVLL 229 (535)
T ss_pred C----ccccCC-HHHH--HHHHhCCCCceEE------EEcCCCC----------ceEEEeeeeeeee-eccccCCCeEEE
Confidence 0 121110 0000 0000112222322 1211000 0001111111100 001356788888
Q ss_pred ccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-ecccc---chhHhHHHHHHHHhCCCcccCeEEEe
Q psy7266 512 RDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNV---PFHSIMFPATLVAAGDQYTKVNHIMA 587 (1175)
Q Consensus 512 R~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i---~fh~~~~pa~l~~~~~~~~~p~~i~~ 587 (1175)
|.-. .|.+++-.-| | +.+..+.|++ |.|++ +-|..++-+ + ++.+|. +.+
T Consensus 230 R~DG----~PtY~fA~vV--------------D--D~~mgITHViRG~D~l~nTpkQi~ly~a----L--g~~~P~-f~H 282 (535)
T PLN02627 230 RSNG----QPVYNFCVAV--------------D--DATMGITHVIRAEEHLPNTLRQALIYKA----L--GFPMPR-FAH 282 (535)
T ss_pred ecCC----Ccccccccee--------------c--ccccCCcEEEechhhhcChHHHHHHHHH----c--CCCCCe-EEE
Confidence 8643 3444311111 1 2444556777 88877 345444433 3 467774 445
Q ss_pred ecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCC--CCCCccccHHHHHHH
Q psy7266 588 TEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRP--ENQDTSFSWQDLATK 645 (1175)
Q Consensus 588 ~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~--~~~D~~f~~~~~~~~ 645 (1175)
+.++ +.+|+||||+.| .+...++.+.||.+++++-||+..+. ...+--|+.+++.+.
T Consensus 283 lpli~~~~g~KLSKR~~-~~~v~~~r~~G~~PeAi~nyla~LGws~~~~~e~~~~~eli~~ 342 (535)
T PLN02627 283 VSLILAPDRSKLSKRHG-ATSVGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLEELVEK 342 (535)
T ss_pred ccceeCCCCCccccccC-CccHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCcCCHHHHHHh
Confidence 5555 678899999987 46888899999999999999987653 223346787776543
|
|
| >cd00939 MetRS_RNA MetRS_RNA binding domain | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-14 Score=105.29 Aligned_cols=45 Identities=56% Similarity=0.796 Sum_probs=43.1
Q ss_pred HHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhcc
Q psy7266 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQ 1080 (1175)
Q Consensus 1036 l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~ 1080 (1175)
|+++|++||++||+||+++|++++||++|++||+||++|+++||.
T Consensus 1 l~~~I~~QGekVR~LKa~ka~k~~i~~eV~~LL~LK~~~k~~tG~ 45 (45)
T cd00939 1 LEKEVAEQGNKVRKLKASKADKSVWQPEVNKLLDLKKQLALAEGK 45 (45)
T ss_pred ChHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999999999999999999999984
|
This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. |
| >PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.5e-14 Score=112.88 Aligned_cols=51 Identities=35% Similarity=0.523 Sum_probs=46.9
Q ss_pred HHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhccccccCC
Q psy7266 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATD 1086 (1175)
Q Consensus 1036 l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~~~~~~~ 1086 (1175)
|+++|++||+.||+||++++++++|+++|++||+||++|+++||++|+|+.
T Consensus 1 L~~~I~~QG~~VR~LKa~ka~k~~i~~aV~~Ll~LK~~~~~~tg~~~~~~~ 51 (56)
T PF00458_consen 1 LEAQIAAQGDKVRKLKAEKADKEEIDAAVAKLLELKAELKELTGKDYKPGK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCSSSTTSSS
T ss_pred ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 678999999999999999999999999999999999999999999998865
|
This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A .... |
| >PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.1e-13 Score=134.86 Aligned_cols=90 Identities=24% Similarity=0.438 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy7266 682 DFLLLALINRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLL 759 (1175)
Q Consensus 682 d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~l 759 (1175)
|+|++++++.+++.+.++|++|+|+.|+..++.| .++||+|++..+||.+.+++... .. ++.++.++++.+++|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~---~~-~~~~l~~~l~~~~~l 76 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES---RE-AQYTLYEILKILLIL 76 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH---HH-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH---HH-HHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999998 57889999999999876543222 23 678889999999999
Q ss_pred ccchhhHHHHHHHHHc
Q psy7266 760 LSPYMPSTASTIASQL 775 (1175)
Q Consensus 760 L~PfmP~~se~i~~~L 775 (1175)
|+|||||+||+||++|
T Consensus 77 l~P~~P~~aEeiw~~l 92 (153)
T PF08264_consen 77 LSPFMPFIAEEIWQRL 92 (153)
T ss_dssp HTTTSHHHHHHHHHHC
T ss_pred cCCCCcHHHHHHHHHh
Confidence 9999999999999888
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A .... |
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-12 Score=151.64 Aligned_cols=264 Identities=17% Similarity=0.227 Sum_probs=147.3
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|...|.|||+|||||++++.+ +..+||-. .|. |+.-+ +++++......+.+.|.++|+|
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~-n~l~Ar~~--~G~---fiLRi-------------eDtD~~R~~~~~~~~i~~~L~w 65 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALF-NWLFARHH--GGK---FILRI-------------EDTDQERSTEEAEEAILEGLKW 65 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHH-HHHHHHHc--CCE---EEEEe-------------CcCCCCCCChHHHHHHHHHHHH
Confidence 67888999999999999999887 88888853 333 33333 4466777888999999999999
Q ss_pred cccccccc--------CCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCccccc-c---eecccCCCccccCCC
Q psy7266 364 FEIDFDYF--------GRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD-R---FVEGVCPKCRYEDAR 431 (1175)
Q Consensus 364 lgi~~D~~--------~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d-~---~V~g~cP~c~~~d~~ 431 (1175)
||+.+|-- ++.+ ++.+..+++..+|.++|++|.. ||...+ |.. + .-.|..|. | .
T Consensus 66 lGl~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~C-----~cs~ee--l~~~r~~~~~~~~~~~--y---~ 131 (476)
T PRK01406 66 LGLDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYYC-----YCTPEE--LEAMREEQRAAGEPPR--Y---D 131 (476)
T ss_pred CCCCCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeeec-----CCCHHH--HHHHHHHHHhCCCCCC--C---C
Confidence 99999954 3344 4778899999999999999964 344321 110 0 00111110 0 0
Q ss_pred CCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeee
Q psy7266 432 GDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCIT 511 (1175)
Q Consensus 432 G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~IS 511 (1175)
| .|..+.. .+.. .-...|.+.++| |+++.- ....|.+..+..+. +-...+.|+.|-
T Consensus 132 ~----~cr~~~~-~~~~--~~~~~g~~~~iR------~k~p~~----------~~~~~~D~i~G~~~-~~~~~~~D~Vl~ 187 (476)
T PRK01406 132 G----RCRDLTK-EEVA--ARLAAGEPPVIR------FKVPDE----------GEVVFDDLVRGEIE-FPNSELDDFVIL 187 (476)
T ss_pred c----cccCCCH-HHHH--HHHhCCCCeeEE------EEcCCC----------CceEEEEeccceEE-eccccCCCcEEE
Confidence 0 1211100 0000 000112233333 222110 00012222221110 001346788888
Q ss_pred ccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEE-eeccccchhHhHHHHHHHHhCCCcccCeEEEeece
Q psy7266 512 RDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQF-MAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEY 590 (1175)
Q Consensus 512 R~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~-~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~ 590 (1175)
|.-. .|.+....-| | +....+-|+ .|.|++.. +-....++.++| +..|...+..-+
T Consensus 188 RsDG----~ptY~~a~vV--------------d--D~~~~ithvIrG~d~~~~-t~~q~~l~~alG--~~~p~~~H~pli 244 (476)
T PRK01406 188 RSDG----TPTYNFAVVV--------------D--DHLMGITHVIRGEDHLSN-TPKQILLYEALG--WEVPVFAHLPLI 244 (476)
T ss_pred ecCC----CccccchHHH--------------H--HHHcCCCEEEECchhhcC-HHHHHHHHHHhC--CCCCeEEEeeee
Confidence 8532 3433211100 0 011111233 58887642 222223445555 555644333334
Q ss_pred eecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhc
Q psy7266 591 LNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYV 628 (1175)
Q Consensus 591 l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~ 628 (1175)
++.+|.||||+.| .++..++++.||-+.+++-|++..
T Consensus 245 ~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~l 281 (476)
T PRK01406 245 LGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALL 281 (476)
T ss_pred eCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHh
Confidence 5889999999999 889999999998888888887754
|
|
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-12 Score=151.81 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=76.3
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ +..+||-+ .|. |+.-+ ++++|.....+|.+.|.++++|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~-n~~~A~~~--~G~---~iLRi-------------eDTd~~r~~~e~~~~I~~dL~w 61 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICL-NFGYAKYY--NGT---CNLRF-------------DDTNPVKEDPEYVESIKRDVEW 61 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHH-HHHHHHHh--CCE---EEEEE-------------cCCCcccCChHHHHHHHHHHHH
Confidence 36778899999999999999887 99999843 333 33334 4477777888999999999999
Q ss_pred cccccccc-CCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDYF-GRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||+.+|.- ++++ .|.+...+...+|+++|++|..
T Consensus 62 LG~~~d~~~~~qS--~~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 62 LGFKWEGKIRYSS--DYFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred cCCCCCCCceEcc--ccHHHHHHHHHHHHHcCCEEee
Confidence 99999643 3454 4888888999999999999974
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=151.69 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=78.8
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ +..+||.+ .| .|+.-+ ++++|.....+|.+.|.++++|
T Consensus 52 v~tRFaPsPtG~LHiGharaall-n~~~Ar~~--gG---~~iLRi-------------EDTDp~r~~~e~~~~I~~dL~w 112 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNL-NFGSARAH--GG---KCYLRY-------------DDTNPETEEQVYIDAIMEMVKW 112 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHH-HHHHHHHh--CC---EEEEEE-------------CCCCccccChHHHHHHHHHHHH
Confidence 68999999999999999998887 99999863 23 233333 4577888888999999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||+.+|....++ .|.+...+...+|+++|++|..
T Consensus 113 LGi~~D~~~~qS--~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 113 MGWKPDWVTFSS--DYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred cCCCCCCCCcCc--hhHHHHHHHHHHHHHcCCEEEc
Confidence 999999765554 5888888999999999999974
|
|
| >PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-13 Score=107.43 Aligned_cols=51 Identities=45% Similarity=0.558 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCCC
Q psy7266 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTNN 1157 (1175)
Q Consensus 1106 ~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~~ 1157 (1175)
|.++|++||+.||+||+++ +++++|+++|++||+||++|+++||.+|.++.
T Consensus 1 L~~~I~~QG~~VR~LKa~k-a~k~~i~~aV~~Ll~LK~~~~~~tg~~~~~~~ 51 (56)
T PF00458_consen 1 LEAQIAAQGDKVRKLKAEK-ADKEEIDAAVAKLLELKAELKELTGKDYKPGK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHCSSSTTSSS
T ss_pred ChHHHHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 6789999999999999998 89999999999999999999999999998864
|
This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A .... |
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-12 Score=150.04 Aligned_cols=278 Identities=14% Similarity=0.112 Sum_probs=156.4
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++.+ +..+||- ..|.=++. + +++++.....++.+.|.++|+|
T Consensus 5 vrtRFAPSPTG~lHiG~artAL~-n~l~Ar~--~gG~fiLR---I-------------EDTD~~R~~~~~~~~i~~~L~W 65 (513)
T PRK14895 5 VITRFAPSPTGFLHIGSARTALF-NYLFARH--HNGKFLLR---I-------------EDTDKERSTKEAVEAIFSGLKW 65 (513)
T ss_pred eeEeeCCCCCCCccHHHHHHHHH-HHHHHHH--cCCEEEEE---E-------------CCCCccccChHHHHHHHHHHHH
Confidence 57788899999999999999887 9998883 34443333 3 3345566778899999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCccccc-ceecccCCCccccCCCCCcccccCCc
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD-RFVEGVCPKCRYEDARGDQCDGCGQL 441 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d-~~V~g~cP~c~~~d~~G~~c~~~g~~ 441 (1175)
||+++|- .++.++ +.+.-+++..+|.++|.+|.. ||...+ |.. +.. .+.|+....+-..| ..+
T Consensus 66 LGl~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~C-----fCt~ee--l~~~r~~---~~~~~~~~~Y~~~c---r~~ 130 (513)
T PRK14895 66 LGLDWNGEVIFQSK--RNNLYKEAALKLLQNGKAYYC-----FTRQEE--IERQRQQ---ALENKQHFIFNSEW---RDK 130 (513)
T ss_pred cCCCCCCCceeEeC--cHHHHHHHHHHHHHcCCeEEe-----cCcHHH--HHHHHHh---hhccCCCCCCChhh---ccc
Confidence 9999993 334443 678888999999999999964 444421 111 000 01111100011111 111
Q ss_pred cccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccC
Q psy7266 442 INAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVP 521 (1175)
Q Consensus 442 ~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP 521 (1175)
... + . ..+.+.++| |+++.- ....|.+..+..+. +-...+.|+.|-|.- |+ |
T Consensus 131 ~~~-~-----~-~~~~~~~iR------~k~p~~----------~~~~~~D~v~G~~~-~~~~~~~D~Vi~RsD--G~--p 182 (513)
T PRK14895 131 DPS-I-----Y-PTDIKPVIR------LKTPRE----------GSITIHDTLQGEVV-IENSHIDDMVLLRAD--GT--A 182 (513)
T ss_pred Chh-h-----h-hcCCCeeEE------EEcCCC----------CceEEEeeccccee-cccccCCCcEEEEeC--CC--c
Confidence 000 0 0 012223333 222210 00012222221110 111346788887763 22 4
Q ss_pred CCCCCCceEEecCccccccCCCCCCCCcceEEEE-eeccccchhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCccc
Q psy7266 522 LPGFENKYSLSSSPSLVQFLPTATPQSKITLYQF-MAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFS 599 (1175)
Q Consensus 522 ~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~-~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMS 599 (1175)
.+....-| |+ .+..+-|+ .|.|++.. +.....++.++| +..| .+.++.+|. .+|+|||
T Consensus 183 tY~~a~vV--------------DD--~~m~ithVIRG~d~~~~-t~~q~~l~~aLG--~~~p-~~~H~plv~~~~g~KLS 242 (513)
T PRK14895 183 TYMLAVVV--------------DD--HDMGITHIIRGDDHLTN-AARQLAIYQAFG--YAVP-SMTHIPLIHGADGAKLS 242 (513)
T ss_pred chhhHHHH--------------HH--HhcCCCEEEECchHhhh-HHHHHHHHHHcC--CCCC-eEEEEEeEEcCCCCccc
Confidence 33211000 00 11112233 48887642 222223455555 5555 556667774 9999999
Q ss_pred ccCCCccCchhhhhcCCCchhHHHHHHhcCC-CCCCccccHHHHHH
Q psy7266 600 KSRGTGVFGNNAKDTGLPADIFRFYLLYVRP-ENQDTSFSWQDLAT 644 (1175)
Q Consensus 600 KS~GN~v~~~d~i~~~~gaDalR~~ll~~~~-~~~D~~f~~~~~~~ 644 (1175)
|+.|. +...++.+.||-+++++-||+..+. .+.+-.|+.+++.+
T Consensus 243 KR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~ 287 (513)
T PRK14895 243 KRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAID 287 (513)
T ss_pred cccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHh
Confidence 99996 4778888899999999999996543 22334678777654
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=124.10 Aligned_cols=90 Identities=17% Similarity=0.257 Sum_probs=68.3
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..++|- ..| .|+.-+|| +++.....++.+.|.++++|
T Consensus 2 v~~RfAPsPtG~LHlG~~~~al~-n~l~ar~--~~G---~~ilRieD-------------td~~r~~~~~~~~i~~dL~w 62 (239)
T cd00808 2 VRTRFAPSPTGFLHIGGARTALF-NYLFARK--HGG---KFILRIED-------------TDQERSVPEAEEAILEALKW 62 (239)
T ss_pred ceEEeCCCCCCcccHHHHHHHHH-HHHHHHH--cCC---eEEEEECc-------------CCCCCCchHHHHHHHHHHHH
Confidence 46778899999999999998887 8888773 223 45555555 45555667888999999999
Q ss_pred ccccccc---------cCCCCCHHHHHHHHHHHHHHHHcC
Q psy7266 364 FEIDFDY---------FGRTSTPQQTEIVQHLFDRVHKAG 394 (1175)
Q Consensus 364 lgi~~D~---------~~~T~~~~~~~~v~~~f~~L~~~G 394 (1175)
|||.+|. .++.+ .+.+..+++..+|.++|
T Consensus 63 lGl~~d~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 63 LGLDWDEGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred cCCCCCcCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 9999997 33444 37777778888888877
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-11 Score=133.16 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=74.7
Q ss_pred EEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhc
Q psy7266 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWF 364 (1175)
Q Consensus 285 i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 364 (1175)
++...|.|||+|||||++++++ +..+||- ..|.=++. + +++++.....++.+.|.++++||
T Consensus 2 ~~RFAPSPtG~lHiG~~rtAL~-n~l~Ar~--~gG~~iLR---i-------------EDtD~~R~~~~~~~~I~~dL~wL 62 (272)
T TIGR03838 2 RGRFAPSPSGPLHFGSLVAALG-SYLDARA--HGGRWLVR---I-------------EDLDPPREVPGAADDILRTLEAY 62 (272)
T ss_pred eeeeCCCCCCcccHHHHHHHHH-HHHHHHH--hCCEEEEE---e-------------CcCCCCCCChHHHHHHHHHHHHc
Confidence 5667889999999999999887 9999984 34443333 3 34666667788999999999999
Q ss_pred ccccccc-CCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 365 EIDFDYF-GRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 365 gi~~D~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||.+|-- ++.+ ++.+.-+++..+|.++|++|..
T Consensus 63 Gl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 63 GLHWDGEVVYQS--QRHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred CCCCCCCeeeee--CCHHHHHHHHHHHHHcCCEEec
Confidence 9999953 3444 4888999999999999999964
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >cd00938 HisRS_RNA HisRS_RNA binding domain | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-11 Score=92.44 Aligned_cols=41 Identities=46% Similarity=0.601 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhh
Q psy7266 1105 ALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLS 1146 (1175)
Q Consensus 1105 ~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~ 1146 (1175)
.|.++|.+||++||+||+++ |+|++|+++|++||+||++|.
T Consensus 2 ~l~~~I~~QGe~VRkLKa~K-A~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 2 KLEEAVKLQGELVRKLKAEK-ASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred cHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999998 899999999999999999994
|
This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. |
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-11 Score=135.06 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=75.8
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ +..+||-. .| .|+.=+| ++++.....++.+.|.++|+|
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~-n~l~Ar~~--~G---~~iLRiE-------------DtD~~R~~~~~~~~I~~dL~w 66 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALG-SWLDARAH--GG---RWLLRIE-------------DIDPPREVPGAADAILADLEW 66 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHH-HHHHHHHc--CC---EEEEEEC-------------cCCCCccchHHHHHHHHHHHH
Confidence 78899999999999999998887 88888743 23 3333343 456666778899999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|||.+|- .++.+ ++.+..+++..+|.++|++|..
T Consensus 67 lGl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C 101 (299)
T PRK05710 67 LGLHWDGPVLYQS--QRHDAYRAALDRLRAQGLVYPC 101 (299)
T ss_pred CCCCCCCCceEee--ccHHHHHHHHHHHHHCCCceec
Confidence 9999994 33444 3888999999999999999964
|
|
| >cd00938 HisRS_RNA HisRS_RNA binding domain | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-11 Score=93.67 Aligned_cols=40 Identities=48% Similarity=0.611 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHH
Q psy7266 1035 ELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL 1074 (1175)
Q Consensus 1035 ~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~ 1074 (1175)
.|+++|++||++||+||++||+|++|+++|++||+||++|
T Consensus 2 ~l~~~I~~QGe~VRkLKa~KA~k~~i~~eV~~LL~LKaql 41 (45)
T cd00938 2 KLEEAVKLQGELVRKLKAEKASKEQIAEEVAKLLELKAQL 41 (45)
T ss_pred cHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999998
|
This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. |
| >cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-10 Score=109.42 Aligned_cols=107 Identities=22% Similarity=0.292 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 652 NNLGNFINRALSFIEKNYGSTIPEI---SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 652 ~~l~n~~~r~~~~~~~~~~~~~p~~---~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
.+++|.++|+.+++.+++.+..|.. .....|+|+++.++.+++.+.++|++|+|+.|+..+++|.+..|+|++..+|
T Consensus 8 ~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~~~p 87 (117)
T cd07375 8 RAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDELKP 87 (117)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHHHhhH
Confidence 4688999999999877665544421 2356789999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchh
Q psy7266 729 WVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYM 764 (1175)
Q Consensus 729 w~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~Pfm 764 (1175)
|.+.+. +...++.++.++++.++++|+|||
T Consensus 88 w~~~~~------~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 88 ALQTEE------LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHcCch------hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 987541 233456677899999999999997
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. |
| >KOG1422|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=116.22 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=121.7
Q ss_pred CCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCHHHHHHHHc-----CCC----hHHH
Q psy7266 8 NNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSANQSCLYLS-----KFD----TKNE 73 (1175)
Q Consensus 8 ~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~-----p~~----~~~~ 73 (1175)
.||+++++.|.|.+.|++|.+..||+.... +.|.+++|+| ..||..++||..|-++|. |.. +.|.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l-~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E~ 98 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVL-KFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPES 98 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeE-EeCCceeccHHHHHHHHHHhcCCCCCcccCCHHH
Confidence 589999999999999999999999998743 6799999999 588899999999999996 211 1222
Q ss_pred HHHHHHHHHHhhhchhhhhhhhcCC-----CCchHHHHHHHHHHHHHhc----CCcccCCCCCccchhHHHHHHHHh---
Q psy7266 74 SAINQWLEWESVELFPSVLSFFDNP-----KVLPDNLKTKLNVLNEAIS----NSFLIENSTTVADICIWTCVYPLL--- 141 (1175)
Q Consensus 74 a~v~~wl~~~~~~l~p~~~~~~~~g-----~~~~~~l~~~L~~Le~~L~----~~fLvG~~lTlADi~l~~~L~~~~--- 141 (1175)
+. +...++..+..++... ......+...|..||++|. ++||.|+++|+||+.+.+-|+.+.
T Consensus 99 as-------ag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~ 171 (221)
T KOG1422|consen 99 AS-------AGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAA 171 (221)
T ss_pred Hh-------hHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHH
Confidence 21 2234445555554311 1223567888899999998 789999999999999999998764
Q ss_pred hCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 142 SDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 142 ~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
...........+++|.||+..+.++.+|......
T Consensus 172 k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~ 205 (221)
T KOG1422|consen 172 KHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPA 205 (221)
T ss_pred HHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCch
Confidence 2222234667899999999999998888765443
|
|
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=132.88 Aligned_cols=95 Identities=19% Similarity=0.319 Sum_probs=68.8
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
|+|...|.|||+|||||++++++ +..+||- ..|. |+.-+ +++++.....++.+.|.++|+|
T Consensus 2 v~tRFAPsPtG~lHiG~~r~al~-n~~~Ar~--~~G~---~iLRi-------------eDtD~~R~~~~~~~~i~~~L~w 62 (314)
T PF00749_consen 2 VRTRFAPSPTGYLHIGHARTALL-NYLFARK--YGGK---FILRI-------------EDTDPERCRPEFYDAILEDLRW 62 (314)
T ss_dssp -EEEE---SSSS-BHHHHHHHHH-HHHHHHH--TTSE---EEEEE-------------ETSSTTTCHHHHHHHHHHHHHH
T ss_pred eeEeeCCCCCCCcccchhHHHHH-HHHHHhc--cCce---EEEec-------------cccccccchhhHHHHHHhheeE
Confidence 57788899999999999999887 8888883 3343 33333 4466777778999999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||+.+|. .++.+ .+.+..+.+.++|+++|++|..
T Consensus 63 lGl~~D~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 63 LGLEWDYGPYYQS--DRLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HT---STCEEEGG--GGHHHHHHHHHHHHHTTSEEEE
T ss_pred EEEecCCeEEeHH--HHHHHHHHHHHHHhhcCCCccc
Confidence 9999993 33344 5889999999999999999974
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >KOG4426|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-08 Score=112.41 Aligned_cols=333 Identities=17% Similarity=0.194 Sum_probs=202.1
Q ss_pred CCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH----H---------
Q psy7266 275 LPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL----E--------- 341 (1175)
Q Consensus 275 ~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~----~--------- 341 (1175)
+|.-..++++|....||.-..+|+||+|+.+| +|.++|.....|++|+.+-..-++|+..-...+ +
T Consensus 182 ~P~l~~KrvlVDFSSPNIAKeMHVGHLRSTII-Gdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp 260 (656)
T KOG4426|consen 182 LPTLSVKRVLVDFSSPNIAKEMHVGHLRSTII-GDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSP 260 (656)
T ss_pred CcccceeeEEEecCCCcHHHHhhhhhhhhhhH-hHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCC
Confidence 45556789999999999999999999998877 999999999999999999888888775432211 0
Q ss_pred ---------------------------------cCCCc------hhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHH
Q psy7266 342 ---------------------------------EGLTP------RQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEI 382 (1175)
Q Consensus 342 ---------------------------------~g~~p------~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~ 382 (1175)
+|-+| ..+|+--...+...+++|.|+....+. ..|...
T Consensus 261 ~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GE---SFYq~~ 337 (656)
T KOG4426|consen 261 PIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKERGE---SFYQDR 337 (656)
T ss_pred CchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhcch---hhhhhH
Confidence 11122 235666667888889999998865433 358888
Q ss_pred HHHHHHHHHHcCCEEeceEE-EeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEE
Q psy7266 383 VQHLFDRVHKAGFTSSASVE-QLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV 461 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~-~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~ 461 (1175)
+.++.+.|..+|++..++.- +.|-+. |+-|+.+
T Consensus 338 m~~vveel~~kglvee~~Gr~i~f~~g----------------------------------------------~~IPLtv 371 (656)
T KOG4426|consen 338 MAEVVEELKSKGLVEEDDGRRIMFPEG----------------------------------------------CDIPLTV 371 (656)
T ss_pred HHHHHHHHhcCCceeecCCceEeccCC----------------------------------------------CCcceEE
Confidence 89999999999999876532 222222 2333333
Q ss_pred eeccccc-ccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCcccccc
Q psy7266 462 KSSTQLF-LELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQF 540 (1175)
Q Consensus 462 ~~~~qwf-l~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~ 540 (1175)
..++-=| .+.+++.. +...|.+..-||.|
T Consensus 372 VKSDGGftYdtsDlaA--------------------l~yRl~EEkadwiI------------------------------ 401 (656)
T KOG4426|consen 372 VKSDGGFTYDTSDLAA--------------------LKYRLNEEKADWII------------------------------ 401 (656)
T ss_pred EecCCCcccccchHHH--------------------HHHHHHHhhcCeEE------------------------------
Confidence 3322111 22222211 11112244456643
Q ss_pred CCCCCCCCcceEEEEeeccc-cchhHhHHHHHHHHhCC-CcccCe-EEEeeceee-cCCCcccccCCCccCchhhhhc--
Q psy7266 541 LPTATPQSKITLYQFMAKDN-VPFHSIMFPATLVAAGD-QYTKVN-HIMATEYLN-YEDGKFSKSRGTGVFGNNAKDT-- 614 (1175)
Q Consensus 541 wp~~~~~~~v~~~~~~GkD~-i~fh~~~~pa~l~~~~~-~~~~p~-~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~-- 614 (1175)
+++...+ ..|.++|- |.-+ .|. +...|+ ..+..|.|+ .+|+||-++.|.+|-..|+++.
T Consensus 402 -------------YVvD~GQs~Hf~t~fk-Aar~-~gwld~~~~RV~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~ 466 (656)
T KOG4426|consen 402 -------------YVVDSGQSQHFNTIFK-AARK-AGWLDPTYPRVEHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGK 466 (656)
T ss_pred -------------EEeeCchhHHHHHHHH-HHHH-cCccCCCccceeeeeeeeEEccCcccccccccceeeHHHHHHHHH
Confidence 2222222 22333332 2111 121 111221 223344454 5667788888888777666651
Q ss_pred ----------------------------CCCchhHHHHHHhcCCCCCCccccHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Q psy7266 615 ----------------------------GLPADIFRFYLLYVRPENQDTSFSWQDLAT-KNNSELLNNLGNFINRALSFI 665 (1175)
Q Consensus 615 ----------------------------~~gaDalR~~ll~~~~~~~D~~f~~~~~~~-~~n~~l~~~l~n~~~r~~~~~ 665 (1175)
+|| .+.|.-+++.. -+|.-||.+.+.+ +-|. +-.+-....|+.+++
T Consensus 467 kRs~~~Liergrdk~~tpeeL~~a~eavayG--ciKYaDL~hnR-~~dY~FSFDkML~DrGnT--AvYLLYa~tRIcSI~ 541 (656)
T KOG4426|consen 467 KRSKEKLIERGRDKVLTPEELDAAQEAVAYG--CIKYADLSHNR-ITDYIFSFDKMLEDRGNT--AVYLLYAYTRICSIA 541 (656)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHhc--chhHhhhcccc-ccceeeeHHHHhhccCcc--eehhHHHHHHHHHHH
Confidence 233 36776666443 3688999988753 2221 112333345777777
Q ss_pred HHhcCCC---------CCCCCCChhhHH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 666 EKNYGST---------IPEISPIHEDFL-LLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 666 ~~~~~~~---------~p~~~~~~~d~~-l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
.+..... .+...+...+.| +-..+-++.+.+.++++++=++..+.++++++..+..|++.+-
T Consensus 542 rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~FY~~Cy 613 (656)
T KOG4426|consen 542 RKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTEFYDSCY 613 (656)
T ss_pred HHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccE
Confidence 6542221 112223333444 4456777888888999999999999999999988888888764
|
|
| >cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=111.41 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhcCC---C----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFDNP---K----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g---~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
.++..++.+++|+.|.+..+.+.+....+.. . ...+.+.+.|..||++|+ ++|++|+++|+|||++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~ 81 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQ 81 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHH
Confidence 3678899999999999999999888765521 1 223478999999999999 9999999999999999998876
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
+............||+|.+|+++|.++|+++++
T Consensus 82 ~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 82 FAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHhhhcccCcccCHHHHHHHHHHHcChHHHhh
Confidence 532211122358899999999999999999875
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-10 Score=101.87 Aligned_cols=65 Identities=23% Similarity=0.321 Sum_probs=58.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++..+ .+||.|+||+|+ ++|..|+||.||++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 73 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV-DNGFVLWESHAILIYLV 73 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE-ECCEEEEcHHHHHHHHh
Confidence 799999999999999999999999999999986442 278999999996 67899999999999985
|
GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress. |
| >cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=101.74 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=58.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++.|+++++++++|+++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.||++||.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~-~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI-HGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE-ECCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999999887432 278999999996 78999999999999984
|
More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates. |
| >KOG3029|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-10 Score=117.17 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=111.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-cc--cCCCCcccEEEeCCCcEEeCHHHHHHHHc-----------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-AR--LLLSKTVPVLELDDGSQLFSANQSCLYLS----------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-~~--~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----------- 66 (1175)
+.||.+..||+|.+||..|.+.|++|+++.|++.. .+ -+-..+||+|. .+|+.+.||.+|+.-|+
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~-~~Geqm~dSsvIIs~laTyLq~~~q~l~ 169 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILL-IRGEQMVDSSVIISLLATYLQDKRQDLG 169 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEE-eccceechhHHHHHHHHHHhccCCCCHH
Confidence 47999999999999999999999999999999865 22 34678999995 66888999999988762
Q ss_pred ------CC-------------------------Ch----HHHHHHHHHHHHHhhhchhhhhhhhc---------------
Q psy7266 67 ------KF-------------------------DT----KNESAINQWLEWESVELFPSVLSFFD--------------- 96 (1175)
Q Consensus 67 ------p~-------------------------~~----~~~a~v~~wl~~~~~~l~p~~~~~~~--------------- 96 (1175)
|. ++ ..+...+.|-.|.+..|.-.+...++
T Consensus 170 eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf~q 249 (370)
T KOG3029|consen 170 EIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWFSQ 249 (370)
T ss_pred HHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHHHH
Confidence 10 10 11223456666665554332222211
Q ss_pred CCC-----------------------------------CchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHHHH
Q psy7266 97 NPK-----------------------------------VLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 97 ~g~-----------------------------------~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
.|+ ..++.+..+++..-..|+ ++|+.|.++++||++++++|+.
T Consensus 250 ~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl~s 329 (370)
T KOG3029|consen 250 AGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVLRS 329 (370)
T ss_pred cCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhhhH
Confidence 111 123344555555555665 8999999999999999999998
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhc
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~ 165 (1175)
+..-... ...-...++..||-+|.+
T Consensus 330 m~gc~af-kd~~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 330 MEGCQAF-KDCLQNTSIGEWYYRMEA 354 (370)
T ss_pred hhhhhHH-HHHHhcchHHHHHHHHHH
Confidence 6422111 122345778899988865
|
|
| >cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-10 Score=101.34 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=58.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+++++|++|.++|++|+.+.++.... ..+|.++||+|+.+||..|+||.+|++||.
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 799999999999999999999999999988876532 267899999998667999999999999985
|
coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses. |
| >cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-10 Score=100.06 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=59.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
.+||+++.||++++++++|+++|++|+.+.+++.+. .+||.|+||+|+.+||..|+||.+|++|+.
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~~ 71 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWAL 71 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhhC
Confidence 379999999999999999999999999999987642 378999999998777999999999999973
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r |
| >cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-10 Score=100.75 Aligned_cols=66 Identities=29% Similarity=0.342 Sum_probs=59.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.++... ..+||.+++|+|+.+||..|+||.||++||.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 79999999999999999999999999999888643 1268999999998788999999999999984
|
cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock. |
| >cd00936 WEPRS_RNA WEPRS_RNA binding domain | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-11 Score=95.62 Aligned_cols=50 Identities=34% Similarity=0.452 Sum_probs=47.5
Q ss_pred HHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhccccccC
Q psy7266 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAAT 1085 (1175)
Q Consensus 1036 l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~~~~~~ 1085 (1175)
|+++|+.||+.||.||++++++.+|+.+|+.|++||++||++||+||+|+
T Consensus 1 ~~~~i~~qge~VR~LK~~~a~k~~~~~av~~Ll~lK~~~k~~tg~~~~~~ 50 (50)
T cd00936 1 LYKKIAAQGDLVRELKAKKAPKEEIDAAVKKLLALKADYKEATGQDYKPG 50 (50)
T ss_pred ChHHHHhchHHHhhhccccCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 46889999999999999999999999999999999999999999999873
|
This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. |
| >KOG1149|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=113.72 Aligned_cols=286 Identities=16% Similarity=0.220 Sum_probs=161.3
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
|=+..-|.|+|.||+|-+|++.. +.++||- ..|.-++.+=-| +...++..-.+++.++++|
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALf-NYLfArk--~gGkFiLRiEDT----------------Dq~R~v~gs~e~i~~~L~w 94 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALF-NYLFARK--KGGKFILRIEDT----------------DQKRLIRGSEEAIYEDLKW 94 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHH-HHHHHHh--cCCeEEEEeccc----------------cccccccchHHHHHHHHHh
Confidence 44455677999999999999887 8888884 345544444333 3344555566778899999
Q ss_pred ccccccccCC-------CCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec--ccCCCccccCCCCCc
Q psy7266 364 FEIDFDYFGR-------TSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE--GVCPKCRYEDARGDQ 434 (1175)
Q Consensus 364 lgi~~D~~~~-------T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~--g~cP~c~~~d~~G~~ 434 (1175)
+||.+|--.+ --..+..++-+...++|++.|.+|+. ||...+..+-..... +.-| .+-.-
T Consensus 95 ~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrC-----FCs~~rL~~lrk~A~k~~~~p------~YD~k 163 (524)
T KOG1149|consen 95 ANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRC-----FCSEERLDLLRKSALKKHEIP------RYDRK 163 (524)
T ss_pred cCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEe-----ccCHHHHHHHHHhhhccCCCC------cccch
Confidence 9999997431 11234667777888999999999985 555532222111110 0000 00000
Q ss_pred ccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCCCcEee
Q psy7266 435 CDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLK----DGLKPRCI 510 (1175)
Q Consensus 435 c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~----~~l~dw~I 510 (1175)
|..+-+. +.. .-.--|.+..+| |++++- ++.....++-|+. .+..|-.|
T Consensus 164 ---ca~ls~~-ei~--~~lakg~pf~iR------Frl~~~---------------~~~f~DLvyG~v~~~~d~~~gD~Vv 216 (524)
T KOG1149|consen 164 ---CANLSDA-EIK--QKLAKGTPFTIR------FRLPKE---------------SPPFTDLVYGKVNHNVDSNEGDPVV 216 (524)
T ss_pred ---hcccCHH-HHH--HHHhcCCCeeEE------EecCCC---------------CCChhhhhhhhhhccccccCCCcEE
Confidence 1111100 000 000012233332 333221 1111122222221 12333333
Q ss_pred eccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-eccccc---hhHhHHHHHHHHhCCCcccCeEEE
Q psy7266 511 TRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVP---FHSIMFPATLVAAGDQYTKVNHIM 586 (1175)
Q Consensus 511 SR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~---fh~~~~pa~l~~~~~~~~~p~~i~ 586 (1175)
-+.- ..|.+++-+-| . +..+.|.|++ |.+.++ -|..++-|+ +|.+|+-+.
T Consensus 217 mKSD----gfPTYHfAnVV-------------D---Dh~M~IsHViRGeEWlpST~KH~lLYkAf------gW~pPkFaH 270 (524)
T KOG1149|consen 217 MKSD----GFPTYHFANVV-------------D---DHLMGISHVIRGEEWLPSTLKHILLYKAF------GWQPPKFAH 270 (524)
T ss_pred EecC----CCcceeeeeee-------------c---chhcchhheeecchhccccHHHHHHHHHh------CCCCCceee
Confidence 3321 22433321111 1 1334445655 666553 455554442 699998887
Q ss_pred eeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcC--CCCCCccccHHHHHHHhhHHHHHH
Q psy7266 587 ATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVR--PENQDTSFSWQDLATKNNSELLNN 653 (1175)
Q Consensus 587 ~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~--~~~~D~~f~~~~~~~~~n~~l~~~ 653 (1175)
..=.++.+|.|.||+.|. +...++.+.||=++++=-|++..+ ....+--|+.+++++.+|-+.++.
T Consensus 271 lpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~i~~ltk 338 (524)
T KOG1149|consen 271 LPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQFSIERLTK 338 (524)
T ss_pred eeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHHHHHhchhhhcc
Confidence 777788999999999985 678888888999999998888764 344556788999888777555443
|
|
| >cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-10 Score=99.42 Aligned_cols=66 Identities=27% Similarity=0.358 Sum_probs=59.3
Q ss_pred CEEEecCCCchHHHHHHHHHh--cCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEF--STTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~--~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+++++++++.+ +|++|+.+.++... ..+||.++||+|+.+||..|+||.||++||.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 799999999999999999999 89999998887643 1378999999998789999999999999984
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. |
| >COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-10 Score=108.55 Aligned_cols=164 Identities=17% Similarity=0.221 Sum_probs=115.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc----cCCCCcccEEEeCCCcEEeCHHHHHHHHcCC------Ch
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR----LLLSKTVPVLELDDGSQLFSANQSCLYLSKF------DT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p~------~~ 70 (1175)
|+||-+..||+|.|+|+++-++|+|++.+.....+++ +-...+||+|+.+||..+.||..|++|+... ..
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~ 80 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTG 80 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhhcc
Confidence 8999999999999999999999999999888777654 2256689999999999999999999998622 12
Q ss_pred HHHHHHHHHHHHHhh----hchhhhhhhhc-------------------CCC---------CchHHHHHHHHHHHHHhc-
Q psy7266 71 KNESAINQWLEWESV----ELFPSVLSFFD-------------------NPK---------VLPDNLKTKLNVLNEAIS- 117 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~----~l~p~~~~~~~-------------------~g~---------~~~~~l~~~L~~Le~~L~- 117 (1175)
.-+-.+..|+.-... .+.|.+....+ .|. .-...+...|+.|+..+.
T Consensus 81 ~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~Li~~ 160 (215)
T COG2999 81 KVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDKLIVG 160 (215)
T ss_pred CcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHHHhcC
Confidence 234457778774433 33444333221 111 112356777888888777
Q ss_pred CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHH
Q psy7266 118 NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169 (1175)
Q Consensus 118 ~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~ 169 (1175)
.+=+- ..++.-||.+|+.|+.+..... ..+. ..+..|..+|.+...+
T Consensus 161 ~s~~n-~~l~~ddi~vFplLRnlt~v~g-i~wp---s~v~dy~~~msektqV 207 (215)
T COG2999 161 PSAVN-GELSEDDILVFPLLRNLTLVAG-IQWP---SRVADYRDNMSEKTQV 207 (215)
T ss_pred cchhc-cccchhhhhhhHHhccceeccc-CCCc---HHHHHHHHHHHHhhCc
Confidence 44233 4699999999999998654332 1111 4688999998875433
|
|
| >cd00936 WEPRS_RNA WEPRS_RNA binding domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-10 Score=93.74 Aligned_cols=50 Identities=34% Similarity=0.409 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCC
Q psy7266 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTN 1156 (1175)
Q Consensus 1106 ~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~ 1156 (1175)
|.++|..||+.||.||.++ +++.+|+.+|+.|+.||++||++||+||+|+
T Consensus 1 ~~~~i~~qge~VR~LK~~~-a~k~~~~~av~~Ll~lK~~~k~~tg~~~~~~ 50 (50)
T cd00936 1 LYKKIAAQGDLVRELKAKK-APKEEIDAAVKKLLALKADYKEATGQDYKPG 50 (50)
T ss_pred ChHHHHhchHHHhhhcccc-CchHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4678999999999999987 7999999999999999999999999999873
|
This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. |
| >cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-10 Score=100.38 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=59.1
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+||+++.||++++++++++++|++|+.+.+++.. ..+||.|++|+|+.+||.+|+||.||++||.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~ 73 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVA 73 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHh
Confidence 7999999999999999999999999999998752 2278999999998777999999999999995
|
EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot |
| >cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.4e-10 Score=97.75 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=57.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.++... ..+||.|+||+|+ ++|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~-~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLE-DGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEE-ECCEEEECHHHHHHHhC
Confidence 78999999999999999999999999998887532 1278999999995 77889999999999984
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions. |
| >cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.3e-10 Score=97.28 Aligned_cols=65 Identities=26% Similarity=0.246 Sum_probs=58.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+||.+++|+|+ ++|..|+||.||++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLE-LDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEE-ECCEEEEcHHHHHHHhC
Confidence 799999999999999999999999999999886431 268999999996 56899999999999984
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. |
| >cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.5e-10 Score=98.81 Aligned_cols=66 Identities=12% Similarity=-0.024 Sum_probs=58.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeC-CCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELD-DGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~-dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+|++++++|.++|++|+.+.++.... .+||.++||+|+.+ +|..|+||.+|++||.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 689999999999999999999999999988865431 26899999999865 5799999999999995
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. |
| >cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=97.89 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=58.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.|+++++++++|+++|++|+.+.++..+. .+||.|+||+|+ ++|.+|+||.||++||.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIV-DGDFTLAESVAILRYLA 73 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEE-ECCEEEEcHHHHHHHHH
Confidence 689999999999999999999999999999987542 268999999996 67899999999999986
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC |
| >PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.8e-10 Score=98.91 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=58.4
Q ss_pred EEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 3 CLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 3 Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
||+++.||+|++++++|.++|++|+.+.++..+. .++|.++||+|+ +||.+|+||.+|++||.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~-~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLV-DDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE-ETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEE-ECCEEEeCHHHHHHHHH
Confidence 8999999999999999999999999999987763 278999999997 77999999999999996
|
... |
| >cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.1e-10 Score=97.25 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=58.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.++++++++++|+++|++|+.+.++..+ ..+||+++||+|+ ++|..|+||.||++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~l~es~aI~~yL~ 71 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLE-IDGKKLTQSNAILRYLA 71 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEE-ECCEEEEecHHHHHHhh
Confidence 78999999999999999999999999999888653 2378999999996 67899999999999985
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma |
| >cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=96.49 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=58.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++++++|++|+.+.++.... .+||.|+||+|+ ++|..|+||.||++||.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLV-DRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEE-ECCEEEEcHHHHHHHHH
Confidence 799999999999999999999999999998886542 378999999995 67789999999999996
|
coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis. |
| >cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=96.70 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=58.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCC-CcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLS-KTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~-g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+++++++++++.|++|+.+.++.... .+||. +++|+|+ ++|.+|+||.||++||.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~-~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLL-HNGKPICESLIIVEYID 71 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEE-ECCEEeehHHHHHHHHH
Confidence 799999999999999999999999999988887532 36895 9999997 57899999999999995
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin, |
| >cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-09 Score=96.75 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=58.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.++++++++++|.++|++|+.+.++... ..+||+|+||+|+ +||..|+||.||++||+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFK-DGDLTLVQSNAILRHLG 71 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEE-ECCEEEEcHHHHHHHHh
Confidence 78999999999999999999999999999987632 2378999999996 67899999999999996
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w |
| >cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-09 Score=97.07 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=58.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.++... ..+||.|++|+|+ ++|..|+||.||++||.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~-~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALE-DGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEE-ECCEEEEcHHHHHHHHh
Confidence 68999999999999999999999999999888642 1278999999996 67899999999999996
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t |
| >cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=104.73 Aligned_cols=98 Identities=21% Similarity=0.375 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhcCC------C-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFDNP------K-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~~g------~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
+++++++|+.|..+.+.|.+..++... . ...+.+.+.+..||++|. ++||+|+++|+|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 478899999999999999876554311 0 123357888999999999 99999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
.++.... .....||+|.+|+++|.++|.++++
T Consensus 82 ~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~k~~ 113 (114)
T cd03188 82 RWAPGVG---LDLSDWPNLAAYLARVAARPAVQAA 113 (114)
T ss_pred HHHhhcC---CChhhChHHHHHHHHHHhCHHhHhh
Confidence 8764322 2346799999999999999999875
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for |
| >cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-09 Score=99.32 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=59.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.++.... .+||.++||+|+.++|..|+||.||++||.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 689999999999999999999999999998887542 278999999998666899999999999984
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega |
| >PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-09 Score=96.54 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=56.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCC-CcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLS-KTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~-g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+|++++..+++.++|++|++.|++|+.+.+++... ..||. |+||+|+.++|..|+||.||++||+
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa 75 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLA 75 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhC
Confidence 677777777799999999999999999999998442 26899 9999998666999999999999995
|
The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B .... |
| >cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-09 Score=95.79 Aligned_cols=65 Identities=26% Similarity=0.260 Sum_probs=57.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.+ ++++++++|.+.|++|+.+.++..+. .+||.+++|+|+.+||..|+||.+|++||.
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~ 73 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLA 73 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence 789999976 58999999999999999998887542 278999999998777999999999999996
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH. |
| >cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-09 Score=102.79 Aligned_cols=100 Identities=12% Similarity=0.172 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhcCCC----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCC
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFDNPK----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSK 145 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~~g~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~ 145 (1175)
.++++++.|+.|..+.+.+.+..+..... .....+.+.|..||++|. ++|++|+++|+|||++++.+.++.....
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~ 81 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLPALGI 81 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHHHcCC
Confidence 46889999999999988888765543111 234467889999999999 9999999999999999999865432221
Q ss_pred CCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 146 VRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 146 ~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
.....+|+|.+|+++|.++|+++.+
T Consensus 82 --~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 82 --ELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred --CCcccchHHHHHHHHHHCCHHHHHh
Confidence 1224799999999999999999875
|
coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis. |
| >COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=112.45 Aligned_cols=173 Identities=16% Similarity=0.124 Sum_probs=120.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCC--cEEEEecCcc---------c------c------------------cCCCCccc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTK--LDVELVDVAD---------A------R------------------LLLSKTVP 45 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~--~e~~~v~~~~---------~------~------------------~~P~g~vP 45 (1175)
+.||.+-.||.++|.+|+-+++|++ +.+..|+..- . + .+..-+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 3689999999999999999999995 3333333211 0 0 11234699
Q ss_pred EEEeCCCcEE--eCHHHHHHHHc-------CC--C---hHHHHHHHHHHHHHhhhchhhhhhhhcCC-----CCchHHHH
Q psy7266 46 VLELDDGSQL--FSANQSCLYLS-------KF--D---TKNESAINQWLEWESVELFPSVLSFFDNP-----KVLPDNLK 106 (1175)
Q Consensus 46 ~L~~~dG~~l--~eS~aI~~YL~-------p~--~---~~~~a~v~~wl~~~~~~l~p~~~~~~~~g-----~~~~~~l~ 106 (1175)
+|....-.+| .||..|+|.|- .. + ..-+.+++.|.+|.-..+...+...-+.. +.+...+-
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~lF 211 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVKKLF 211 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcccccCceeeecccchHHHHHHHHHHHH
Confidence 9986554444 39999999984 11 1 13477788888876555433222221111 12334677
Q ss_pred HHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHh-----hCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 107 TKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLL-----SDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 107 ~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~-----~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
..|+.||..|+ +.||+|+++|-||+.++++|.++- ...+.......||||..|...+-+.|.|++..
T Consensus 212 ~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~ 284 (324)
T COG0435 212 EALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETV 284 (324)
T ss_pred HHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCccccccc
Confidence 88999999999 999999999999999999998753 22233344566999999999999999998864
|
|
| >cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=96.53 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=57.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCC--CcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDD--GSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~d--G~~l~eS~aI~~YL~ 66 (1175)
|+||+++. |++++++++|.++|++|+.+.+++..+ .+||.++||+|+.++ |..|+||.||++||.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 68999986 999999999999999999999986431 268999999997654 899999999999996
|
Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and |
| >cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-09 Score=96.03 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=58.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---ccCCCCcccEEEeC---CCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---RLLLSKTVPVLELD---DGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---~~~P~g~vP~L~~~---dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+|++++++|.++|++|+.+.++.... ..+|.++||+|+.+ +|.+|+||.+|++||.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHH
Confidence 689999999999999999999999999998876431 25899999999866 5899999999999985
|
Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure. |
| >cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-09 Score=105.85 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhcCCC----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhC--
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFDNPK----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSD-- 143 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~~g~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~-- 143 (1175)
.+++.+++|+.|..+.+.+.+..++.... .....+.+.|+.||++|. ++||+|+++|+|||++++.+.++...
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~ 81 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEE 81 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 46889999999999999888766654221 224467889999999999 99999999999999999988875321
Q ss_pred --CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 144 --SKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 144 --~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.........||++.+|+++|.++|++++++...
T Consensus 82 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 116 (126)
T cd03185 82 VGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDR 116 (126)
T ss_pred HcCccccCcccCchHHHHHHHHHhccHHHHhCCCH
Confidence 111113467999999999999999999987654
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi |
| >cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-09 Score=102.47 Aligned_cols=98 Identities=24% Similarity=0.403 Sum_probs=77.8
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhc---CCC----------------CchHHHHHHHHHHHHHhc-CCcccCCCC
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFD---NPK----------------VLPDNLKTKLNVLNEAIS-NSFLIENST 126 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g~----------------~~~~~l~~~L~~Le~~L~-~~fLvG~~l 126 (1175)
|.++.+++++++|+.|..+.+.+.+...++ .+. .....+.+.|+.||++|+ ++||+|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 457789999999999999999988654322 111 112357888999999999 999999999
Q ss_pred CccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCH
Q psy7266 127 TVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLP 167 (1175)
Q Consensus 127 TlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P 167 (1175)
|+|||++++.+.++..... ....||+|.+|+++|.++|
T Consensus 82 t~ADi~l~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALARGP---LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHcCc---ccccCchHHHHHHHHhcCC
Confidence 9999999998888643321 4678999999999999876
|
cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl |
| >cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.6e-09 Score=93.50 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=58.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.|+++++++++|.++|++|+.+.+++... .++|.+++|+|+ ++|..|+||.||++||.
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV-IDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEE-ECCEEEEcHHHHHHHhC
Confidence 799999999999999999999999999999887431 268999999996 66899999999999983
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid. |
| >cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-09 Score=103.38 Aligned_cols=100 Identities=25% Similarity=0.358 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc---CCC--------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD---NPK--------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~---~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
+++.+++|+.|..+.+.+.+..++. .+. ...+.+.+.|+.||+.|+ ++|++|+++|+|||++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~ 80 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRR 80 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHH
Confidence 3678999999999999987655422 111 123467889999999999 9999999999999999999988
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
...... .....||+|.+|+++|.++|.+++++
T Consensus 81 ~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 81 LEWIGI--DDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHhccc--cchhhchHHHHHHHHHhhCHHHHHhc
Confidence 643322 13567999999999999999999864
|
Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en |
| >cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-09 Score=104.84 Aligned_cols=100 Identities=25% Similarity=0.390 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc-------CC-C-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD-------NP-K-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWT 135 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~-------~g-~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~ 135 (1175)
+++++++|+.|..+.+.+.+...+. .+ . .....+.+.|+.||++|. ++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 4778999999998888887654311 11 1 123467888999999999 999999999999999999
Q ss_pred HHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 136 ~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
.+.++... ........||+|.+|+++|.++|.++++
T Consensus 82 ~~~~~~~~-~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 117 (118)
T cd03187 82 YLQYLMAT-PFAKLFDSRPHVKAWWEDISARPAWKKV 117 (118)
T ss_pred HHHHHHHc-cchhhhhcCchHHHHHHHHHhCHHHHhh
Confidence 98876432 1112356799999999999999999875
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a |
| >cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4 | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-09 Score=106.50 Aligned_cols=105 Identities=21% Similarity=0.199 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCC-
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDS- 144 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~- 144 (1175)
.++.+++|++|....+.+.+........ .....+...|..||++|. ++|++|+++|+|||++++.+.++....
T Consensus 4 ~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~~ 83 (142)
T cd03190 4 LRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVYV 83 (142)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHhh
Confidence 4778999999999998887665433211 234567889999999999 999999999999999999987652111
Q ss_pred ----CCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 145 ----KVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 145 ----~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
........||+|.+|+++|.++|++++++...
T Consensus 84 ~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~ 119 (142)
T cd03190 84 QHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFD 119 (142)
T ss_pred hhcccccchhhhCchHHHHHHHHhcCchHhhhcCHH
Confidence 01122458999999999999999999987753
|
ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast. |
| >cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.8e-09 Score=101.71 Aligned_cols=100 Identities=23% Similarity=0.407 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc----CCC----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhh
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD----NPK----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLS 142 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~----~g~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~ 142 (1175)
+++++++|+.|..+.+.+.+...+. .+. .....+.+.|+.||++|+ ++||+|+++|+|||++++.+.++..
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 4788999999998888877655443 111 234578899999999999 9999999999999999999988643
Q ss_pred CCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 143 DSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 143 ~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
... .....+|+|.+|+++|.++|.++++.
T Consensus 82 ~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 82 LLP--LDLSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred hcC--CChhhCchHHHHHHHHHcccchHHHH
Confidence 111 22467999999999999999999865
|
GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th |
| >cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.9e-09 Score=94.35 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=57.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--ccC-----CCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--RLL-----LSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--~~~-----P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++.++++++++++|.+.|++|+.+.++..+. ..+ |+|+||+|+ +||.+|+||.||++||+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~-~~g~~l~ES~AI~~YL~ 73 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVE-IDGMKLVQTRAILNYIA 73 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEE-ECCEEEeeHHHHHHHHH
Confidence 589999999999999999999999999999886442 233 689999996 68899999999999996
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the |
| >cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.7e-09 Score=97.17 Aligned_cols=85 Identities=20% Similarity=0.366 Sum_probs=69.1
Q ss_pred cCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCC
Q psy7266 66 SKFDTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDS 144 (1175)
Q Consensus 66 ~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~ 144 (1175)
.|.++.+.+++++|+++....+. .....++...+..||++|. ++|++|+++|+|||++++.+.+. .
T Consensus 11 ~~~~~~~~~~vd~~~d~~~~~l~----------~~~~~~~~~~l~~le~~L~~~~fl~Gd~~tiADi~l~~~l~~~---~ 77 (96)
T cd03200 11 APNAPNAATNIDSWVDTAIFQLA----------EGSSKEKAAVLRALNSALGRSPWLVGSEFTVADIVSWCALLQT---G 77 (96)
T ss_pred cCCCchHHHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHc---c
Confidence 37888899999999997653432 1356677899999999999 99999999999999999998753 1
Q ss_pred CCCCCcccchhHHHHHHHHhcC
Q psy7266 145 KVRPLLSSYTNITPWYDRISKL 166 (1175)
Q Consensus 145 ~~~~~~~~~p~L~~W~~rl~~~ 166 (1175)
.....||||.+|+++|.++
T Consensus 78 ---~~~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 78 ---LASAAPANVQRWLKSCENL 96 (96)
T ss_pred ---cccccChHHHHHHHHHHhC
Confidence 1236799999999999763
|
Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents. |
| >cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S | Back alignment and domain information |
|---|
Probab=98.83 E-value=9e-09 Score=100.05 Aligned_cols=99 Identities=15% Similarity=0.261 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHHhhhchhhhhhhhcC-----C-----C-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccc
Q psy7266 69 DTKNESAINQWLEWESVELFPSVLSFFDN-----P-----K-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVAD 130 (1175)
Q Consensus 69 ~~~~~a~v~~wl~~~~~~l~p~~~~~~~~-----g-----~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlAD 130 (1175)
++.+++.+++|+.|..+.+.+.+...+.. + . .....+.+.|..||++|. ++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 45688999999999888888766554421 1 1 123467889999999999 8999999999999
Q ss_pred hhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHH
Q psy7266 131 ICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169 (1175)
Q Consensus 131 i~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~ 169 (1175)
|++++.+.++..... .....||+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKVVKL--RVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHhcCC--CCccccHHHHHHHHHHHhccCC
Confidence 999999988644332 2246899999999999999863
|
cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti |
| >cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-09 Score=103.43 Aligned_cols=105 Identities=22% Similarity=0.415 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc--CC--C-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD--NP--K-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~--~g--~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
+++.+++|+.|..+.+.+.+...+. .+ . .....+.+.|+.||++|. ++||+|+++|+|||++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~ 80 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLL 80 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHH
Confidence 3678999999999999988765543 11 1 123456888999999999 9999999999999999999988
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+............+|+|.+|++++.++|.|++++.+.
T Consensus 81 ~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 117 (123)
T cd03181 81 GFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEV 117 (123)
T ss_pred HHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCC
Confidence 6432221122467999999999999999999877543
|
EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role |
| >cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.1e-09 Score=93.60 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=56.3
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc------cc----c----CCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD------AR----L----LLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~------~~----~----~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+||++..+++++++++++++.|++|+.+.+++.. .+ . .|+|+||+|+ +||.+|+||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYI-DGDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEE-ECCEEEeehHHHHHHHh
Confidence 7999999999999999999999999999998743 11 1 2999999996 78899999999999996
|
The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc |
| >cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=90.85 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=56.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++. +++++++++|.++|++|+.+.++... ..+||.++||+|+ ++|..|+||.||++||.
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLV-DGDLVLTESAAIILYLA 72 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEE-ECCEEEEcHHHHHHHHH
Confidence 78999886 67999999999999999999988642 1278999999995 77899999999999996
|
cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb |
| >KOG1195|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.8e-07 Score=102.13 Aligned_cols=348 Identities=16% Similarity=0.177 Sum_probs=193.1
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHH
Q psy7266 256 KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTAT 335 (1175)
Q Consensus 256 ~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~i 335 (1175)
...|+....+.... ....++++|....||.+-+.|+||.|..+| +-+++.-.+..|++|.-+-..-++|..+
T Consensus 92 ~~i~~~~~~~g~~~-------~~~~k~iVVefSSPNIAK~FHvGhLRsTii-G~flanl~e~~G~~Vtr~NYLGDWGkQF 163 (567)
T KOG1195|consen 92 PIIEEQREKYGKNE-------LGSGKKIVVEFSSPNIAKPFHVGHLRSTII-GNFLANLHEALGWEVTRVNYLGDWGKQF 163 (567)
T ss_pred HHHHHHhcccCccc-------cccCceEEEEecCCCcccccccchhhhhhh-hhHhhhhHHhhCCceeehhhhhHHHHHh
Confidence 55666655553322 124688999999999999999999998887 9999999999999998776555555433
Q ss_pred HHHHH------------------------------HcCCCchhhH----------------------HHHHHHHHHHHhh
Q psy7266 336 ETKAL------------------------------EEGLTPRQIC----------------------DKYFAIHREVYEW 363 (1175)
Q Consensus 336 e~~a~------------------------------~~g~~p~~~~----------------------~~~~~~~~~~~~~ 363 (1175)
-..+. +...+..+.+ +--.+...+.+++
T Consensus 164 gll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~R 243 (567)
T KOG1195|consen 164 GLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNR 243 (567)
T ss_pred hHHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 22110 1111111111 1122455677888
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccc
Q psy7266 364 FEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLIN 443 (1175)
Q Consensus 364 lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~ 443 (1175)
|||.||.+...+ ..+.+..+.+...+...|++...+.....+-.. .
T Consensus 244 l~v~FD~y~gES-qv~~e~~~~~~d~~rs~~l~~e~dG~~vidL~~-------------------------------~-- 289 (567)
T KOG1195|consen 244 LNVKFDEYSGES-QVSNEKMQEALDLLRSANLTEEIDGTIVIDLSK-------------------------------I-- 289 (567)
T ss_pred hceeeeeccchH-HHHHHHHHHHHHHHHhcCCcccCCCcEEEEecc-------------------------------c--
Confidence 999999875443 257888888888888888655443222111110 0
Q ss_pred cccccCCcccCCCCccEEeec-ccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCC
Q psy7266 444 AIELIQPRCKQCSQAPTVKSS-TQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL 522 (1175)
Q Consensus 444 ~~el~~~~c~r~~~~~~~~~~-~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~ 522 (1175)
..+.|..++.+.. ...| -.|.+.. -| +.+.+
T Consensus 290 --------~~~~~~~~V~ksdgttLY-----------------------ltRdiaa-al-~Rl~~--------------- 321 (567)
T KOG1195|consen 290 --------DKKAGKAVVQKSDGTTLY-----------------------LTRDIAA-AL-DRLEK--------------- 321 (567)
T ss_pred --------CcccceEEEEcCCCceeh-----------------------HHHHHHH-HH-HHHHh---------------
Confidence 0000111111100 0111 1111111 11 00111
Q ss_pred CCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCcccccC
Q psy7266 523 PGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSR 602 (1175)
Q Consensus 523 ~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~ 602 (1175)
|..+ ++++++...+--..+.+| -++...|..|.-+-..+..|.+ .-||+.+
T Consensus 322 ------------------y~fd------r~iYVvd~~Q~~hf~~lf-~ilk~mg~~~a~~~qHV~~G~v----~GmsTRk 372 (567)
T KOG1195|consen 322 ------------------YSFD------RLIYVVDSQQKDHFCQLF-EILKKMGFDWAKKLQHVNFGRV----QGMSTRK 372 (567)
T ss_pred ------------------cCcc------eEEEEechHHHHHHHHHH-HHHHHhCchhhhhcceeccccc----ccccccC
Confidence 1111 235666443322222233 3455555443222223333333 5799999
Q ss_pred CCccCchhhhhc---------------------------CCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHH
Q psy7266 603 GTGVFGNNAKDT---------------------------GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLG 655 (1175)
Q Consensus 603 GN~v~~~d~i~~---------------------------~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~ 655 (1175)
|++++..|+++. -.|.-++.+-.+..+ ..++..|+|+++.. +|.+---.+.
T Consensus 373 G~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~r-r~s~yeF~w~~~~~-~~gdtg~yLQ 450 (567)
T KOG1195|consen 373 GKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGR-RISNYEFSWNRVLS-FEGDTGPYLQ 450 (567)
T ss_pred CceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHH-hcccceEEhhhhhe-ecCCchHHHH
Confidence 999999888761 145556666555533 34688899988753 2221111122
Q ss_pred HHHHHHHHHHHHhcCCCCCC----CC---C-ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Q psy7266 656 NFINRALSFIEKNYGSTIPE----IS---P-IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQT 725 (1175)
Q Consensus 656 n~~~r~~~~~~~~~~~~~p~----~~---~-~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~ 725 (1175)
....|.-++..+ +....++ .. + .+.-..|+..|..+.+.+..+++.++.+..+.+++.++...+..+..
T Consensus 451 Y~HsRL~Slerk-~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~ 527 (567)
T KOG1195|consen 451 YTHSRLRSLERK-FSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKI 527 (567)
T ss_pred HHHHHHHHHHHh-ccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhh
Confidence 223355555443 3332221 11 1 22234577788889999999999999999999999998777776654
|
|
| >cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.4e-09 Score=98.95 Aligned_cols=95 Identities=18% Similarity=0.399 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc----CCC---------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD----NPK---------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~----~g~---------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
+++++++|+.|..+.+.+.+...+. .+. ...+.+.+.|+.||++|. ++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 4788999999999999998765432 111 123467899999999999 99999999999999999988
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~ 169 (1175)
....... .....||+|.+|+++|.++|+|
T Consensus 82 ~~~~~~~---~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWFELP---IERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHcc---cccccCchHHHHHHHHHhCCCC
Confidence 5433221 2357899999999999999864
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-08 Score=99.68 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhc------CCC--C-----chHHHHHHHHHHHHHhc-C--CcccCCCCCccchhHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFD------NPK--V-----LPDNLKTKLNVLNEAIS-N--SFLIENSTTVADICIW 134 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~------~g~--~-----~~~~l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~ 134 (1175)
.+++.+++|+.|..+.+.+.+...+. .+. . ..+.+.+.|..||++|. + +||+|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 46889999999999888875322211 121 0 12356888999999997 3 7999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
+.+.++.... .....||+|.+|+++|.++|.+++++
T Consensus 82 ~~~~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~ 117 (121)
T cd03191 82 PQVYNARRFG---VDLSPYPTIARINEACLELPAFQAAH 117 (121)
T ss_pred HHHHHHHHhC---CCcccCcHHHHHHHHHHhChhHHHhC
Confidence 9988764332 22478999999999999999999875
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th |
| >PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-08 Score=89.45 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=49.7
Q ss_pred CCchHHHHHHHHHhcCCCcEEEEecCc----c-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 8 NNVQTLKLLITAEFSTTKLDVELVDVA----D-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 8 ~sp~~~~v~ial~~~gi~~e~~~v~~~----~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
.||+++|++++++++|++++...+... . ..+||.|+||+|++++|.+++||.+|++||.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 489999999999999999999888431 1 2278999999999889999999999999995
|
... |
| >cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.2e-09 Score=98.35 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=72.3
Q ss_pred HHHHHHhhhchhhhhhhhcC-C----CCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcc
Q psy7266 78 QWLEWESVELFPSVLSFFDN-P----KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLS 151 (1175)
Q Consensus 78 ~wl~~~~~~l~p~~~~~~~~-g----~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~ 151 (1175)
+|+.|..+.+.+.+...+.. . ......+.+.++.||++|+ ++|++|+++|+|||++++.+.++.... ...
T Consensus 3 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~----~~~ 78 (103)
T cd03207 3 RWLFFYAGVVEPALIAKAMGIEEPARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFG----LLP 78 (103)
T ss_pred eeeeeccccccHHHHHHHcCCCcchhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcC----CCC
Confidence 56666666666655443331 1 1234568999999999999 999999999999999999999865432 246
Q ss_pred cchhHHHHHHHHhcCHHHHHHHH
Q psy7266 152 SYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 152 ~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
.+|+|.+|+++|.++|.++.+++
T Consensus 79 ~~p~l~~w~~~~~~~p~~~~~~~ 101 (103)
T cd03207 79 ERPAFDAYIARITDRPAFQRAAA 101 (103)
T ss_pred CChHHHHHHHHHHcCHHHHHHhc
Confidence 79999999999999999998764
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-08 Score=89.73 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=56.2
Q ss_pred CEEEecC-------CCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNR-------NNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~-------~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++ .||++++++++|+++|++|+.+.++.. ..+|.|+||+|+ ++|.+|+||.+|++||.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--~~~p~g~vPvl~-~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--KRSPKGKLPFIE-LNGEKIADSELIIDHLE 71 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--cCCCCCCCCEEE-ECCEEEcCHHHHHHHHH
Confidence 4789887 589999999999999999999887753 578999999997 67899999999999996
|
Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele |
| >cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-08 Score=96.58 Aligned_cols=104 Identities=12% Similarity=0.218 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc----CCcccCCCCCccchhHHHHHHHHhh--
Q psy7266 69 DTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS----NSFLIENSTTVADICIWTCVYPLLS-- 142 (1175)
Q Consensus 69 ~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~----~~fLvG~~lTlADi~l~~~L~~~~~-- 142 (1175)
|+..|+.+++|+.|... +...+......| ...+.+.+.++.||+.|. ++|++| ++|+|||++++.+.++..
T Consensus 1 d~~~ra~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~ 77 (120)
T cd03203 1 DPAKREFADELLAYTDA-FTKALYSSLIKG-DPSAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFL 77 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHH
Confidence 46789999999998322 222221111123 346678889999999995 789999 999999999999876431
Q ss_pred -CCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 143 -DSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 143 -~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
..........||+|.+|+++|.++|+++++...
T Consensus 78 ~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~ 111 (120)
T cd03203 78 SELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQD 111 (120)
T ss_pred HHhcCccccccCcHHHHHHHHHhcchHHHhHcCC
Confidence 111112236899999999999999999988654
|
GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar |
| >cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-08 Score=92.54 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=53.6
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
..||+++++||+|+++|++|+++.+++.+.. +||.|+||+|+ ++|.+|+||.+|++||.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~-~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL-YNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEE-ECCEEecCHHHHHHHHH
Confidence 4689999999999999999999999987632 79999999996 68899999999999996
|
They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI |
| >KOG4244|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.8e-08 Score=101.63 Aligned_cols=155 Identities=16% Similarity=0.200 Sum_probs=108.5
Q ss_pred CCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----CC--ChHHHHHHHHHH
Q psy7266 8 NNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS-----KF--DTKNESAINQWL 80 (1175)
Q Consensus 8 ~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~-----p~--~~~~~a~v~~wl 80 (1175)
.||+|.++-+.++..+||||.+...+. ..++.|++|-++ -||+.+.+|.-|..+|. +. .+.++++.....
T Consensus 60 LSPfClKvEt~lR~~~IpYE~~~~~~~--~rSr~G~lPFIE-LNGe~iaDS~~I~~~L~~hf~~~~~L~~e~~a~s~Al~ 136 (281)
T KOG4244|consen 60 LSPFCLKVETFLRAYDIPYEIVDCSLK--RRSRNGTLPFIE-LNGEHIADSDLIEDRLRKHFKIPDDLSAEQRAQSRALS 136 (281)
T ss_pred CChHHHHHHHHHHHhCCCceeccccce--eeccCCCcceEE-eCCeeccccHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 689999999999999999998766553 456889999996 78899999999999996 22 233444333222
Q ss_pred HHHhhhc----------------------------hhhhhhhhc---------------CCCC----chHHHHHHHHHHH
Q psy7266 81 EWESVEL----------------------------FPSVLSFFD---------------NPKV----LPDNLKTKLNVLN 113 (1175)
Q Consensus 81 ~~~~~~l----------------------------~p~~~~~~~---------------~g~~----~~~~l~~~L~~Le 113 (1175)
..++..+ .+.+..++. .|.- -.+-+.+.|+.++
T Consensus 137 rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~ell~rDlr~i~ 216 (281)
T KOG4244|consen 137 RMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDELLHRDLRAIS 216 (281)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHHHHHHHHHHHH
Confidence 2222111 111111110 1211 1234588899999
Q ss_pred HHhc-CCcccCCCCCccchhHHHHHHHHhh---CCCCCCCcccchhHHHHHHHHhc
Q psy7266 114 EAIS-NSFLIENSTTVADICIWTCVYPLLS---DSKVRPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 114 ~~L~-~~fLvG~~lTlADi~l~~~L~~~~~---~~~~~~~~~~~p~L~~W~~rl~~ 165 (1175)
..|+ ..||.|+++|-+|+.+++.|..+.. ........+++|||..|.+||..
T Consensus 217 ~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 217 DYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRK 272 (281)
T ss_pred HHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHH
Confidence 9999 9999999999999999999987653 11112345689999999999875
|
|
| >cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-08 Score=99.40 Aligned_cols=102 Identities=18% Similarity=0.374 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhhchhhhhhhhc--------CCC--------CchHHHHHHHHHHHHH-hc-CCcccCCCCCccchhHH
Q psy7266 73 ESAINQWLEWESVELFPSVLSFFD--------NPK--------VLPDNLKTKLNVLNEA-IS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 73 ~a~v~~wl~~~~~~l~p~~~~~~~--------~g~--------~~~~~l~~~L~~Le~~-L~-~~fLvG~~lTlADi~l~ 134 (1175)
++.+++|+.|..+.+.+.+...+. .+. ...+.+.+.+..||++ ++ ++|++|+++|+|||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 466889999998888776543211 111 1123578889999997 45 79999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhc--CHHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISK--LPQVQKALKTW 176 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~--~P~~~~~l~~~ 176 (1175)
+.+.+...... .....||+|.+|+++|.+ +|+++++...+
T Consensus 82 ~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~~~p~~~~~~~~~ 123 (126)
T cd03183 82 CEIMQPEAAGY--DVFEGRPKLAAWRKRVKEAGNPLFDEAHKII 123 (126)
T ss_pred HHHHHHHhcCC--cccccCchHHHHHHHHHHhcchhHHHHHHHH
Confidence 98877543222 235789999999999999 99999987655
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio |
| >cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.1e-08 Score=85.22 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=58.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+|+++++++.+.|++|+.+.++.... ..+|.+++|+|+ .+|..++||.+|++||.
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLE-DGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEE-ECCEEEEcHHHHHHHhC
Confidence 789999999999999999999999999999887642 267999999996 56899999999999984
|
In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma |
| >cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-08 Score=87.72 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=55.3
Q ss_pred CEEEec-------CCCchHHHHHHHHHhcCCCcEEEEecCccc-------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSN-------RNNVQTLKLLITAEFSTTKLDVELVDVADA-------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~-------~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||.. +.||++++++++|.++|++|+.+.++..+. .+||.++||+|+.++|..|+||.+|++||.
T Consensus 1 ~~~~~~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 1 ITLYDLAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CeeEeccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 466754 568999999999999999999998886542 248999999997543899999999999996
|
This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. |
| >cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.7e-08 Score=85.28 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=56.4
Q ss_pred CEEEecC-------CCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNR-------NNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~-------~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|.||.++ .||+|++++++|+++|++|+.+.++... ++|.|+||+|+ ++|..|+||.+|++||.
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--~~p~g~vP~l~-~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--RSPTGKLPFLE-LNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--cCCCcccCEEE-ECCEEEcCHHHHHHHHh
Confidence 5788877 8999999999999999999999887643 78999999996 67899999999999985
|
Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. |
| >cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-08 Score=95.26 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=67.9
Q ss_pred HHHHHHHhhhchhhhhhhhc--CC------CCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCC
Q psy7266 77 NQWLEWESVELFPSVLSFFD--NP------KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVR 147 (1175)
Q Consensus 77 ~~wl~~~~~~l~p~~~~~~~--~g------~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~ 147 (1175)
++|+.|..+.+.+.....+. .+ +...+.+.+.++.||++|+ ++|++|+++|+|||++++.+.+.... .
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~---~ 78 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFGAPLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPEG---G 78 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhcc---C
Confidence 56888887777654333221 11 1335678999999999999 99999999999999999998764322 2
Q ss_pred CCcccchhHHHHHHHHhcCHHH
Q psy7266 148 PLLSSYTNITPWYDRISKLPQV 169 (1175)
Q Consensus 148 ~~~~~~p~L~~W~~rl~~~P~~ 169 (1175)
.....||+|.+|+++|.++|.+
T Consensus 79 ~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 79 VDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred CChhhCcHHHHHHHHHHhCcCC
Confidence 3357899999999999999864
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.3e-08 Score=94.14 Aligned_cols=104 Identities=19% Similarity=0.305 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhcCC---CCchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHHHHHHHhhCCC
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFDNP---KVLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWTCVYPLLSDSK 145 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~~g---~~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~L~~~~~~~~ 145 (1175)
+|+..+.|+++.+ .+.+.+...+... ....+.+...|..||++|. ++|++|+++|+|||++++.+.++.....
T Consensus 2 ~ra~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~ 80 (124)
T cd03184 2 EKAQQKLLLERFS-KVVSAFYKLLGAPSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKL 80 (124)
T ss_pred hHHHHHHHHHHHh-hhhHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHh
Confidence 4788899999987 4444444443321 1345678889999999997 6899999999999999999877542211
Q ss_pred ---CCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 146 ---VRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 146 ---~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.......||+|.+|+++|.++|.++.++...
T Consensus 81 ~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~ 114 (124)
T cd03184 81 LLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDT 114 (124)
T ss_pred hccccCCcccChHHHHHHHHhccChHHHHHhCCH
Confidence 1124578999999999999999999987654
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re |
| >cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.64 E-value=7e-08 Score=85.43 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=53.5
Q ss_pred ecCCCchHHHHHHHHHhcCCCcEEEEecCccc-------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 5 SNRNNVQTLKLLITAEFSTTKLDVELVDVADA-------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 5 ~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
....|+++++++++|+++|++|+.+.+++... .+||.|++|+|+ ++|..|+||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLV-DGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEE-ECCEEEEcHHHHHHHhC
Confidence 35678999999999999999999999987541 378999999996 67899999999999984
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. |
| >cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=7e-08 Score=95.07 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=69.0
Q ss_pred hhchhhhhhhhcC-----CCCchHHHHHHHHHHHHHhc-----------------CCcccCCCCCccchhHHHHHHHHhh
Q psy7266 85 VELFPSVLSFFDN-----PKVLPDNLKTKLNVLNEAIS-----------------NSFLIENSTTVADICIWTCVYPLLS 142 (1175)
Q Consensus 85 ~~l~p~~~~~~~~-----g~~~~~~l~~~L~~Le~~L~-----------------~~fLvG~~lTlADi~l~~~L~~~~~ 142 (1175)
..+++.+..++.. ++.....+...|..||++|. ++||+|+++|+|||++++.+.++..
T Consensus 9 ~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~ 88 (134)
T cd03198 9 EDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKV 88 (134)
T ss_pred HHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4566666666542 23445678999999999996 3599999999999999999886531
Q ss_pred C---CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 143 D---SKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 143 ~---~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
. .........||||.+|+++|.++|+|++++..-
T Consensus 89 ~~~~~~g~~i~~~~P~L~aw~~ri~aRPsfk~t~~~~ 125 (134)
T cd03198 89 VAKKYRNFEIPADLTGLWRYLKNAYQREEFTNTCPAD 125 (134)
T ss_pred HHHhhcCCCccccCHHHHHHHHHHHCCHHHHHHcCCH
Confidence 1 011122478999999999999999999986543
|
They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T |
| >cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=92.97 Aligned_cols=73 Identities=15% Similarity=0.311 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.+.+.+.|..||++|. ++||+|+++|+|||++++.+.++..... .....||+|.+|+++|.++|.++++++.-
T Consensus 37 ~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~~--~~~~~~P~l~~~~~rv~~~p~vk~~~~~~ 110 (121)
T cd03209 37 LAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIFEP--DCLDAFPNLKDFLERFEALPKISAYMKSD 110 (121)
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHhCc--cccccChHHHHHHHHHHHCHHHHHHHhcc
Confidence 3456888999999999 9999999999999999999988653222 23568999999999999999999987643
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m |
| >KOG2903|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.6e-08 Score=100.16 Aligned_cols=172 Identities=16% Similarity=0.140 Sum_probs=115.2
Q ss_pred EEEecCCCchHHHHHHHHHhcCCC--cEEEEecC----------------ccc--------c-----------------c
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTK--LDVELVDV----------------ADA--------R-----------------L 38 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~--~e~~~v~~----------------~~~--------~-----------------~ 38 (1175)
-||....||.+.|++++.+++|++ +-+..+.. .+. . .
T Consensus 39 hLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~Y 118 (319)
T KOG2903|consen 39 HLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPNY 118 (319)
T ss_pred EEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCCC
Confidence 589999999999999999999985 11222221 010 0 0
Q ss_pred CCCCcccEEEeCCC--cEEeCHHHHHHHHcC---------C-------ChHHHHHHHHHHHHHhhhchhhhhhhhc--CC
Q psy7266 39 LLSKTVPVLELDDG--SQLFSANQSCLYLSK---------F-------DTKNESAINQWLEWESVELFPSVLSFFD--NP 98 (1175)
Q Consensus 39 ~P~g~vP~L~~~dG--~~l~eS~aI~~YL~p---------~-------~~~~~a~v~~wl~~~~~~l~p~~~~~~~--~g 98 (1175)
...-+||||.+..- .+=.||..|+|.+-. . .+..++++++|..|.-..+...+...-+ .+
T Consensus 119 ~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~INNGVYk~GFA~~~ 198 (319)
T KOG2903|consen 119 TGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKINNGVYKCGFAEKQ 198 (319)
T ss_pred CceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecccccCceeeecccccc
Confidence 12346999975433 233499999999840 0 1245788899888875554333222211 11
Q ss_pred C---CchHHHHHHHHHHHHHhc-C--CcccCCCCCccchhHHHHHHHHh-----hCCCCC-CCcccchhHHHHHHHHhc-
Q psy7266 99 K---VLPDNLKTKLNVLNEAIS-N--SFLIENSTTVADICIWTCVYPLL-----SDSKVR-PLLSSYTNITPWYDRISK- 165 (1175)
Q Consensus 99 ~---~~~~~l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~~~L~~~~-----~~~~~~-~~~~~~p~L~~W~~rl~~- 165 (1175)
+ ..-..+-+.|+.+|+.|. + .|++|+++|.|||.+++++.++- ...+.. ..+..||+|..|..++-.
T Consensus 199 e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~iY~~ 278 (319)
T KOG2903|consen 199 EAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNIYWN 278 (319)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHHHhh
Confidence 1 222356778899999999 4 49999999999999999987743 111211 345699999999999988
Q ss_pred CHHHHHHH
Q psy7266 166 LPQVQKAL 173 (1175)
Q Consensus 166 ~P~~~~~l 173 (1175)
.|.|+...
T Consensus 279 ~~~~~~Tt 286 (319)
T KOG2903|consen 279 IPGFSSTT 286 (319)
T ss_pred ccchhhcc
Confidence 89888763
|
|
| >cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=89.18 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhh----cCCC-------CchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFF----DNPK-------VLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~----~~g~-------~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L 137 (1175)
.+++++.+|+.|..+.+.+...... +.+. .....+.+.+..||.+|. ++||+| .+|+||+++++.+
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 5788999999999999987522111 1111 224567889999999996 599999 5999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
.++..... ... |++.+|++||.++|+|++.++
T Consensus 81 ~~~~~~g~---~l~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 81 NRLVLNGD---PVP--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHcCC---CCC--HHHHHHHHHHHCCHHHHHHHh
Confidence 99754433 222 999999999999999999774
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-07 Score=88.56 Aligned_cols=65 Identities=20% Similarity=0.403 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCH
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLP 167 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P 167 (1175)
...+.+.|+.+|++|. ++|++|+++|+|||++++.+.++........ ...||+|.+|+++|.++|
T Consensus 30 ~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 30 RAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcc-cccCHHHHHHHHHHHcCC
Confidence 4567888999999999 9999999999999999999999765544211 389999999999999987
|
The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S .... |
| >PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.5e-08 Score=90.06 Aligned_cols=92 Identities=22% Similarity=0.445 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHHHhhhchhhhhhhhc---CCCCchHHHHHHHHHHHHHhc-CC--cccCCCCCccchhHHHHHHHHhh
Q psy7266 69 DTKNESAINQWLEWESVELFPSVLSFFD---NPKVLPDNLKTKLNVLNEAIS-NS--FLIENSTTVADICIWTCVYPLLS 142 (1175)
Q Consensus 69 ~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g~~~~~~l~~~L~~Le~~L~-~~--fLvG~~lTlADi~l~~~L~~~~~ 142 (1175)
++..++.+++|++|.. .+......... .+....+++...|..||++|+ +. ||+|+++|+|||++|+.|..+.
T Consensus 2 ~~~~~a~i~~W~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~- 79 (99)
T PF14497_consen 2 DPYWRALIDRWLDFSV-AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLR- 79 (99)
T ss_dssp --TTHHHHHHHHH-GH-CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHhccc-hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHh-
Confidence 3456788899999661 00000000000 011345688999999999999 76 9999999999999999997653
Q ss_pred CCCCCCCcccchhHHHHHHHHhc
Q psy7266 143 DSKVRPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 143 ~~~~~~~~~~~p~L~~W~~rl~~ 165 (1175)
.. .. ...||||.+|++||.+
T Consensus 80 -~~-~~-~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 80 -WA-DF-PKDYPNLVRWYERIEE 99 (99)
T ss_dssp -CC-HH-TTTCHHHHHHHHHHHT
T ss_pred -hc-cc-ccccHHHHHHHHhhcC
Confidence 11 11 1689999999999974
|
... |
| >cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=92.89 Aligned_cols=96 Identities=15% Similarity=0.261 Sum_probs=68.1
Q ss_pred hchhhhhhhhcCC---CCchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHHHHHhhC-C--CCCCCcccchhHH
Q psy7266 86 ELFPSVLSFFDNP---KVLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCVYPLLSD-S--KVRPLLSSYTNIT 157 (1175)
Q Consensus 86 ~l~p~~~~~~~~g---~~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L~~~~~~-~--~~~~~~~~~p~L~ 157 (1175)
.+++.+..++... ....+.+.+.|..||.+|. ++||+|+++|+|||++++.+.++... . ........||+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~ 92 (121)
T cd03201 13 KIFSTFVGFLKSKDSNDGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVK 92 (121)
T ss_pred HHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHH
Confidence 4444444444311 1234567888999999997 69999999999999999977665321 1 0111247899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Q psy7266 158 PWYDRISKLPQVQKALKTWTEVLK 181 (1175)
Q Consensus 158 ~W~~rl~~~P~~~~~l~~~~~~~k 181 (1175)
+|+++|.++|+|++++..-..+..
T Consensus 93 ~w~~rl~~rps~~~t~~~~~~~~~ 116 (121)
T cd03201 93 SYMKALFSRESFVKTKAEKEDVIA 116 (121)
T ss_pred HHHHHHHCCchhhhcCCCHHHHHH
Confidence 999999999999998765444443
|
DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins. |
| >cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.6e-08 Score=91.08 Aligned_cols=90 Identities=22% Similarity=0.345 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhc----C--CC-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFD----N--PK-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~----~--g~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
+++++++|+.|..+.+.+.+..+.. . .. .....+.+.++.||.+|+ ++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 4788999999998888887654322 0 11 234567889999999999 89999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHh
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRIS 164 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~ 164 (1175)
.++.... .....+|+|.+|++++.
T Consensus 82 ~~~~~~~---~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADEGG---FDLADYPAIRAWLARIE 105 (105)
T ss_pred HhccccC---CChHhCccHHHHHHhhC
Confidence 8864322 22577999999999873
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-07 Score=90.96 Aligned_cols=71 Identities=18% Similarity=0.368 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhc-C---CcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 103 DNLKTKLNVLNEAIS-N---SFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 103 ~~l~~~L~~Le~~L~-~---~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.+.+.|..||++|. + +||+|+++|+|||++++.+.++..... .....||+|.+|+++|.++|.+++++..
T Consensus 38 ~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~~--~~~~~~P~l~~~~~rv~~~p~v~~~~~~ 112 (126)
T cd03210 38 KDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLAP--GCLDAFPLLKAFVERLSARPKLKAYLES 112 (126)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhCh--HhhhcChHHHHHHHHHHhCcHHHHHHhC
Confidence 457788999999998 5 799999999999999999988643221 2357899999999999999999998754
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre |
| >cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.1e-07 Score=90.48 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhc---CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 104 NLKTKLNVLNEAIS---NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 104 ~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.+.+.|..||++|. ++|++|+++|+|||++++.+.++..... .....||+|.+|+++|.++|.+++++..-
T Consensus 43 ~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~~--~~l~~~P~l~~~~~rv~~~P~vk~~~~~~ 116 (137)
T cd03208 43 AKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELDP--SLLSDFPLLQAFKTRISNLPTIKKFLQPG 116 (137)
T ss_pred HHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhch--hhhccChHHHHHHHHHHcCHHHHHHHhcC
Confidence 34788999999997 5799999999999999999988643222 23578999999999999999999988753
|
The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS |
| >cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-07 Score=88.89 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHHHhc-C----------CcccCCCCCccchhHHHHHHHHhhCCCCCC--CcccchhHHHHHHHHhcCH
Q psy7266 101 LPDNLKTKLNVLNEAIS-N----------SFLIENSTTVADICIWTCVYPLLSDSKVRP--LLSSYTNITPWYDRISKLP 167 (1175)
Q Consensus 101 ~~~~l~~~L~~Le~~L~-~----------~fLvG~~lTlADi~l~~~L~~~~~~~~~~~--~~~~~p~L~~W~~rl~~~P 167 (1175)
....+.+.|+.||++|. + +||+|+++|+|||++++.+.++........ ....||+|.+|++||.++|
T Consensus 30 ~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv~aRp 109 (111)
T cd03204 30 ILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYFERVLQRE 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHHHHHHcCC
Confidence 45678899999999998 6 499999999999999999988754322111 1368999999999999998
Q ss_pred HH
Q psy7266 168 QV 169 (1175)
Q Consensus 168 ~~ 169 (1175)
+|
T Consensus 110 sf 111 (111)
T cd03204 110 SF 111 (111)
T ss_pred CC
Confidence 75
|
More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates. |
| >PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-07 Score=80.59 Aligned_cols=61 Identities=26% Similarity=0.530 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHH
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDR 162 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~r 162 (1175)
.+.+.+.|+.||.+|. ++|++|+++|+|||++++.+.++............||+|.+|++|
T Consensus 8 ~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 8 RAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 4667889999999999 899999999999999999999986554433446899999999986
|
... |
| >cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-06 Score=84.04 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=63.7
Q ss_pred HHHHHHHhhhchhhhhhhhc-------CC-------CCchHHHHHHHHHHHHHh---c-CCcccCCCCCccchhHHHHHH
Q psy7266 77 NQWLEWESVELFPSVLSFFD-------NP-------KVLPDNLKTKLNVLNEAI---S-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 77 ~~wl~~~~~~l~p~~~~~~~-------~g-------~~~~~~l~~~L~~Le~~L---~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
+.|..+..+.+.+.+..++. .+ ....+.+.+.+..+|..| + ++||+|+ +|+|||++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~ 82 (114)
T cd03194 4 RAWARSAAAEMHSGFAALRSECPMNLRARVPGFELSEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVT 82 (114)
T ss_pred hHHHHHHHHHHHCcHHHHHHhCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHH
Confidence 44555666666555544332 01 122344566677777666 4 7899999 9999999999998
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
++..... .. .|+|.+|+++|.++|.+++.++
T Consensus 83 ~~~~~~~---~~--~P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 83 RFRTYGL---PL--SPAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred HHHHcCC---CC--CHHHHHHHHHHHCCHHHHHHHh
Confidence 8643321 12 3999999999999999998764
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=76.46 Aligned_cols=58 Identities=10% Similarity=0.101 Sum_probs=48.9
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.++++.+++++|++.|+||+.+... .....+|.|+||+|+ +||.+|+||+||+.||.
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~-~~~~~~P~GkVP~L~-~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA-NAEFMSPSGKVPFIR-VGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC-CccccCCCCcccEEE-ECCEEEeCHHHHHHHHh
Confidence 46789999999999999999987432 123477899999996 58899999999999985
|
Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury. |
| >KOG1148|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.7e-07 Score=104.43 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=75.4
Q ss_pred EEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 283 ~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
-++|..||-|||+|||||+....+ .==+|+++ .|. -..+..+++|+...++|++.|.++..
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInv-NFgyAk~~--~G~----------------cyLRfDDTNPEkEee~yf~sI~e~V~ 308 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINV-NFGYAKAH--GGV----------------CYLRFDDTNPEKEEEEYFESIKEMVA 308 (764)
T ss_pred eeEEeCCCCCCceeeecchhheee-chhhhhhh--CCe----------------EEEecCCCCcchhhHHHHHHHHHHHH
Confidence 478999999999999999996554 44444442 222 11234568999999999999999999
Q ss_pred hccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 363 WFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 363 ~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|||..+- .-|.+..|++...+.-..|+++|++|..
T Consensus 309 WLG~~P~--kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 309 WLGFEPY--KVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred HhCCCce--eeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 9998764 3466667999999999999999999963
|
|
| >cd01200 WHEPGMRS_RNA EPRS-like_RNA binding domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.1e-07 Score=69.27 Aligned_cols=41 Identities=39% Similarity=0.487 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhc
Q psy7266 1108 AEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALT 1149 (1175)
Q Consensus 1108 ~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~ 1149 (1175)
++|..||+.||.||.++ +++.+|+.+|+.|+.||++|+.+|
T Consensus 2 ~~i~~qg~~vR~lK~~~-a~k~~~~~~v~~L~~lK~~~~~~~ 42 (42)
T cd01200 2 EKIAEQGDLVRKLKAEK-APKEEIDAAVKKLLALKAQYKEAT 42 (42)
T ss_pred cHHHHhHHHHHhccccC-CCHHHHHHHHHHHHHHHHHhhhcC
Confidence 57999999999999987 799999999999999999999865
|
This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. |
| >cd01200 WHEPGMRS_RNA EPRS-like_RNA binding domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.5e-07 Score=70.23 Aligned_cols=41 Identities=39% Similarity=0.544 Sum_probs=38.6
Q ss_pred HHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHh
Q psy7266 1038 AAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMK 1078 (1175)
Q Consensus 1038 ~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~ 1078 (1175)
++|..||+.||.||.+++++.+|+.+|+.|++||++|+..|
T Consensus 2 ~~i~~qg~~vR~lK~~~a~k~~~~~~v~~L~~lK~~~~~~~ 42 (42)
T cd01200 2 EKIAEQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKEAT 42 (42)
T ss_pred cHHHHhHHHHHhccccCCCHHHHHHHHHHHHHHHHHhhhcC
Confidence 57999999999999999999999999999999999999765
|
This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. |
| >cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-06 Score=81.33 Aligned_cols=87 Identities=23% Similarity=0.442 Sum_probs=65.2
Q ss_pred HHHHHHHhhhchhhhhhhhcCC-----C------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCC
Q psy7266 77 NQWLEWESVELFPSVLSFFDNP-----K------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDS 144 (1175)
Q Consensus 77 ~~wl~~~~~~l~p~~~~~~~~g-----~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~ 144 (1175)
++|+.|....+.+.+....... . ...+.+.+.++.||++|. +.|++|+++|+|||++++.+.++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~ 81 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLG 81 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhh
Confidence 5678888877777655554311 1 123467899999999999 999999999999999999999876433
Q ss_pred CCCCCcccchhHHHHHHHH
Q psy7266 145 KVRPLLSSYTNITPWYDRI 163 (1175)
Q Consensus 145 ~~~~~~~~~p~L~~W~~rl 163 (1175)
........+|+|.+|+++|
T Consensus 82 ~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 82 PLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred hhhhhhccCccHHHHHHhC
Confidence 2111257899999999875
|
In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ |
| >cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.5e-06 Score=77.49 Aligned_cols=63 Identities=19% Similarity=0.356 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCC----CCcccchhHHHHHHHHh
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVR----PLLSSYTNITPWYDRIS 164 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~----~~~~~~p~L~~W~~rl~ 164 (1175)
.+.+.+.++.||++|+ ++|++|+++|+|||++++.+.++....... .....||+|.+|+++|.
T Consensus 21 ~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 21 YSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 5677899999999999 999999999999999999998864321111 12467999999999873
|
Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible |
| >cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.9e-06 Score=80.39 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=54.3
Q ss_pred CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhc
Q psy7266 100 VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 100 ~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~ 165 (1175)
...+.+.+.|+.||++|+ ++|++|+++|+|||++++.+.+...... ......||+|.+|++||.+
T Consensus 58 ~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~-~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 58 AALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSP-FPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCc-ccccccCChHHHHHHHHhc
Confidence 445678999999999999 9999999999999999999988654222 1235789999999999976
|
This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. |
| >KOG3027|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.5e-05 Score=76.92 Aligned_cols=157 Identities=11% Similarity=0.197 Sum_probs=107.7
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHcC--------CChHHHHHHHH
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLSK--------FDTKNESAINQ 78 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p--------~~~~~~a~v~~ 78 (1175)
+.+..|+.|...|+..++||.++. ....+.++|.|+||.|. .+..++.|=.+|+.++.. -+-.+++.++.
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~-~~NaefmSP~G~vPllr-~g~~~~aef~pIV~fVeak~~~l~s~lsE~qkadmra 109 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQ-RANAEFMSPGGKVPLLR-IGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKADMRA 109 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeee-cCCccccCCCCCCceee-ecchhhhhhhHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 456779999999999999999754 33456789999999994 668889999999999851 11123444444
Q ss_pred HHHHHhhhchhh--------------hhhhhc----------------------------CCCC----chHHHHHHHHHH
Q psy7266 79 WLEWESVELFPS--------------VLSFFD----------------------------NPKV----LPDNLKTKLNVL 112 (1175)
Q Consensus 79 wl~~~~~~l~p~--------------~~~~~~----------------------------~g~~----~~~~l~~~L~~L 112 (1175)
.+.+....+..+ +....+ .+.. ..+++..+++.|
T Consensus 110 ~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc~~aL 189 (257)
T KOG3027|consen 110 YVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKCCRAL 189 (257)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHH
Confidence 444433322211 111000 1111 134568889999
Q ss_pred HHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCC----CCCcccchhHHHHHHHHhc
Q psy7266 113 NEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKV----RPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 113 e~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~----~~~~~~~p~L~~W~~rl~~ 165 (1175)
...|+ .+||.|+++|-+|..+++.++.+.-.... .....+|+||.++-.||++
T Consensus 190 sa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 190 SAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQ 247 (257)
T ss_pred HHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999 99999999999999999999887522111 1235678888888888764
|
|
| >cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2 | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.6e-05 Score=77.72 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhc
Q psy7266 102 PDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~ 165 (1175)
++.|...++.+=+.+. ++|+.|+++|+|||+++++|..+..... ......||+|.+|++||.+
T Consensus 81 r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~-~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 81 REWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPA-FKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhcc-ccchhhCcCHHHHHHHHHH
Confidence 4445555554444444 6899999999999999999988643322 1156789999999999975
|
Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t |
| >cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=74.93 Aligned_cols=89 Identities=17% Similarity=0.338 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhcCCC----------CchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHHHHH
Q psy7266 72 NESAINQWLEWESVELFPSVLSFFDNPK----------VLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 72 ~~a~v~~wl~~~~~~l~p~~~~~~~~g~----------~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~L~ 138 (1175)
+++.+++|++.. ..+...+...++... ...+.+.+.++.||++|. ++|++|+++|+|||++++.+.
T Consensus 2 e~~~v~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTI-ADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHH
Confidence 356677877764 345555544443211 123467889999999996 579999999999999999998
Q ss_pred HHhhCCCCCCC-cccchhHHHHHHHH
Q psy7266 139 PLLSDSKVRPL-LSSYTNITPWYDRI 163 (1175)
Q Consensus 139 ~~~~~~~~~~~-~~~~p~L~~W~~rl 163 (1175)
++..... .. ...||+|.+|++++
T Consensus 81 ~~~~~~~--~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYLDP--KLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHhhCc--hhhHHhChhHHHHHHhC
Confidence 8643322 22 67899999999875
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition |
| >KOG3028|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00022 Score=77.99 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=114.4
Q ss_pred CCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHcC------C--C--hHHHHHHH
Q psy7266 8 NNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLSK------F--D--TKNESAIN 77 (1175)
Q Consensus 8 ~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p------~--~--~~~~a~v~ 77 (1175)
.++.|..+++.+++.+-|.+++..+ +....|.|++|+|+.++|..+.+-.-|+.||-- . + ..+.+++.
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ss--N~~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a~~~ 93 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSS--NPWRSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLADTL 93 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeec--CCCCCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHHHHH
Confidence 5788999999999999766665443 233568899999999999999999999999851 1 1 34677888
Q ss_pred HHHHHHhhhchhhhhhhhcC-----------------------------------------CCCc--hH----HHHHHHH
Q psy7266 78 QWLEWESVELFPSVLSFFDN-----------------------------------------PKVL--PD----NLKTKLN 110 (1175)
Q Consensus 78 ~wl~~~~~~l~p~~~~~~~~-----------------------------------------g~~~--~~----~l~~~L~ 110 (1175)
.|+.+..+.+.+++...++. |... .+ ....+++
T Consensus 94 a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~Aska~~ 173 (313)
T KOG3028|consen 94 AFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKDASKALN 173 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 99999888888877665541 1111 11 2377889
Q ss_pred HHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCC----CCcccchhHHHHHHHHhc
Q psy7266 111 VLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVR----PLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 111 ~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~----~~~~~~p~L~~W~~rl~~ 165 (1175)
.|...|+ ..|++|+++|--|..+++.+..++....-. .....++||.++.+++..
T Consensus 174 ~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 174 LLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 9999999 999999999999999999999865433211 111236777777766653
|
|
| >cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.7e-05 Score=74.54 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHH
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRI 163 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl 163 (1175)
...+.+.|..||++|. ++| +++|+|||++++.+.++............||+|.+|+++|
T Consensus 39 ~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 39 RGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 4577889999999999 888 8999999999999988753322222357899999999885
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. |
| >cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=64.88 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=52.1
Q ss_pred CEEEecC-------CCchHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNR-------NNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~-------~sp~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||.++ .||+|.++.+.|+..|++|+++... +....|.|++|+|+ ++|..|.+|..|++||.
T Consensus 1 ~~L~~~~~~~g~ps~sp~clk~~~~Lr~~~~~~~v~~~~--n~~~sp~gkLP~l~-~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 1 MELHVWGGDWGLPSVDPECLAVLAYLKFAGAPLKVVPSN--NPWRSPTGKLPALL-TSGTKISGPEKIIEYLR 70 (73)
T ss_pred CEEEEECCCCCCCcCCHHHHHHHHHHHcCCCCEEEEecC--CCCCCCCCccCEEE-ECCEEecChHHHHHHHH
Confidence 5777543 5789999999999999999886433 24567899999996 67899999999999985
|
Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0002 Score=64.38 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=55.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--c---cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--R---LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--~---~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+.+.||+|.+++.+|...|++|+.+.++.... . .++..++|++. .||..|.++..|++||+
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~-i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVF-IGGKLIGGSDELEAYLA 79 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEE-ECCEEEcCHHHHHHHhC
Confidence 479999999999999999999999999987765421 1 34678999994 78899999999999985
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0033 Score=64.51 Aligned_cols=110 Identities=10% Similarity=0.106 Sum_probs=80.5
Q ss_pred CCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcC-CC----CCCCCC-ChhhHHHHHHH
Q psy7266 616 LPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYG-ST----IPEISP-IHEDFLLLALI 689 (1175)
Q Consensus 616 ~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~-~~----~p~~~~-~~~d~~l~~~l 689 (1175)
+|.|++||++++..+. .+++|+++.+..... +-.--+.....|+.+++.+.-. .. +....+ .+.++.++..+
T Consensus 3 i~~~a~~~~~l~~~~~-~~~~fd~~~~~~~~~-~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l 80 (156)
T cd07956 3 VGVGAVKYQDLSNKRI-KDYTFDWERMLSFEG-DTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLL 80 (156)
T ss_pred cchhHHHHHHHhcCCC-CCceecHHHHHhhcC-CCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHH
Confidence 6789999999996554 799999998653211 1112344555688888876431 11 110112 45677888889
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 690 NRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 690 ~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
..+.+.+..++...+++.++..+.++....|.|++.++
T Consensus 81 ~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~ 118 (156)
T cd07956 81 AKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACP 118 (156)
T ss_pred HHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 99988889999999999999999999999999998764
|
This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA. |
| >cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00014 Score=71.70 Aligned_cols=62 Identities=13% Similarity=0.348 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhC-CCC---CCCcccchhHHHHHHHHh
Q psy7266 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSD-SKV---RPLLSSYTNITPWYDRIS 164 (1175)
Q Consensus 103 ~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~-~~~---~~~~~~~p~L~~W~~rl~ 164 (1175)
......|+.|+..|+ ++||+|+++|.||+++++.+..+... ... ......||||.+|.+||.
T Consensus 60 ~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 60 EEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 345788999999999 99999999999999999998876532 111 122568999999999974
|
Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury. |
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0025 Score=73.22 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=42.9
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
.|+++. -|||.|||||..+.+. .++....|+++.+..+ |.|..-. ..+.++ +..+.....+..+|-.
T Consensus 4 ~v~~G~-~PTG~~HlG~~l~~~~-----~~~~~q~~~~~~i~Ia-D~ha~t~-----~~~~~~-~~~~~~~~~~~~~~lA 70 (328)
T TIGR00233 4 RVLTGI-QPSGKMHLGHYLGAIQ-----TKWLQQFGVELFICIA-DLHAITV-----KDNTDP-DALRKAREELAADILA 70 (328)
T ss_pred EEEEee-CCCcHhHHHHHHHHHH-----HHHHHhCCCCEEEEee-cchhhcC-----CCCCCH-HHHHHHHHHHHHHHHH
Confidence 444443 5889999999886554 3444456888765543 3332210 011122 2334444555677888
Q ss_pred ccccccc
Q psy7266 364 FEIDFDY 370 (1175)
Q Consensus 364 lgi~~D~ 370 (1175)
+|+++|.
T Consensus 71 ~GlDp~k 77 (328)
T TIGR00233 71 VGLDPKK 77 (328)
T ss_pred hCcChhh
Confidence 9999874
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0016 Score=72.97 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=55.0
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
++.|.++. -|||.|||||..+++. .++....++-=.|++=.|.|.+-+ .+..+.+-.+.+...+..+|
T Consensus 5 ~~~vlSG~-~PSG~lHLGny~ga~~-----~~v~~q~~~~~~f~~IaDlha~t~------~~~~~~~~l~~~~~e~~a~~ 72 (314)
T COG0180 5 KFRVLSGI-QPSGKLHLGNYLGAIR-----NWVLLQEEYYECFFFIADLHAITV------RQDPTEEDLRQATREVAADY 72 (314)
T ss_pred CceEEecC-CCCCCcchhHhHHHHH-----HHHHHhcccCceEEEEecHHHhhc------CCCChHHHHHHHHHHHHHHH
Confidence 34555554 5899999999997553 455545554234556667665432 12222244555656666778
Q ss_pred hhccccccc---cCCCCCHHHHHHHH
Q psy7266 362 EWFEIDFDY---FGRTSTPQQTEIVQ 384 (1175)
Q Consensus 362 ~~lgi~~D~---~~~T~~~~~~~~v~ 384 (1175)
-.+||+++. |..+.-++|.+..+
T Consensus 73 LA~GiDP~k~~if~QS~v~e~~eLa~ 98 (314)
T COG0180 73 LAVGLDPEKSTIFLQSEVPEHAELAW 98 (314)
T ss_pred HHhccCccccEEEEccCchHHHHHHH
Confidence 889999986 33455666655444
|
|
| >cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00033 Score=70.08 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCC----CCcccchhHHHHHHHHhc
Q psy7266 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVR----PLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 103 ~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~----~~~~~~p~L~~W~~rl~~ 165 (1175)
......|+.|+..|+ ++||+|+++|.+|+++++.+..+....... .....||||.+|++||.+
T Consensus 67 ~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 67 RDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred HHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 456788999999999 999999999999999999988765322211 225689999999999874
|
Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. |
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0015 Score=74.95 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=43.6
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
-|||.|||||..+++- ...+.+...|.++++ +=.|-|-+ + ...++.++ +++......+|-.+|++++.
T Consensus 11 qPTG~~HLGnylga~k---~~~~lq~~~~~~~~~-~IADlHal-t------~~~~~~~l-~~~~~~~~~~~lA~GlDP~k 78 (332)
T PRK12556 11 KPTGYPHLGNYIGAIK---PALQMAKNYEGKALY-FIADYHAL-N------AVHDPEQF-RSYTREVAATWLSLGLDPED 78 (332)
T ss_pred CCCCcchHHHHHHHHH---HHHHHHHhcCCeEEE-EEechhhc-c------CCCCHHHH-HHHHHHHHHHHhheeecccc
Confidence 4789999999886442 223344444544433 34444433 1 01244443 44444566778899999874
Q ss_pred ---cCCCCCHHHHH
Q psy7266 371 ---FGRTSTPQQTE 381 (1175)
Q Consensus 371 ---~~~T~~~~~~~ 381 (1175)
|..+.-++|.+
T Consensus 79 ~~if~qS~v~~~~e 92 (332)
T PRK12556 79 VIFYRQSDVPEIFE 92 (332)
T ss_pred eEEEECCCchHHHH
Confidence 23344455543
|
|
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0019 Score=72.42 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=42.1
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
++.+|.|+.+++..--- +..-.+ ....|..+.. -+| ..+|.|||||.||.|+...+.+ +++.++=++.+
T Consensus 156 ~vp~G~DQ~~~i~l~rd-la~r~n-~~~~p~~l~~-p~l~~l~G~KMSKS~~~~i~l~~~~d---sp~~i~~ki~~ 225 (273)
T cd00395 156 IQPGGSDQWGNITLGRE-LARRFN-GFTIAEGLTI-PLVTKLDGPKFGKSESGPKWLDTEKT---SPYEFYQFWIN 225 (273)
T ss_pred EEEecHHHHHHHHHHHH-HHHHhC-CCCCCeEEee-ccccCCCCCcCCCCCCCCccccccCC---CHHHHHHHHHc
Confidence 78899999876544211 111111 1344555544 455 5899999999999988765543 35555555554
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=58.21 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=54.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+.+.||+|.+++-+|...|++|+.+.++..... .....++|++ ..||..|.++..|.+||+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i-fi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQV-FIDGELIGGSDDLEKYFA 72 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeE-EECCEEEeCHHHHHHHhC
Confidence 4799999999999999999999999998887654411 2356689999 588899999999999984
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0013 Score=59.60 Aligned_cols=65 Identities=9% Similarity=-0.001 Sum_probs=54.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+.+.||+|.+++.+|...|++|+.+.++.... .+++..++|++ ..||..|.+...+..+-.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i-~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQI-FIDAQHIGGCDDLYALDA 74 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEE-EECCEEEeCHHHHHHHHH
Confidence 479999999999999999999999999988876541 25688899999 478899999888877643
|
|
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0039 Score=72.89 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=54.6
Q ss_pred EEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhc
Q psy7266 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWF 364 (1175)
Q Consensus 285 i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 364 (1175)
|.++. -|||.|||||..+++- . ..+.+...|++++|. =.|-|-+- ...+|.++.+. ...+..+|-..
T Consensus 5 vlSGi-qPTG~lHLGNylGaik--~-~v~lq~q~~~~~~~~-IADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~ 71 (431)
T PRK12284 5 VLTGI-TTTGTPHLGNYAGAIR--P-AIAASRQPGVESFYF-LADYHALI-------KCDDPARIQRS-TLEIAATWLAA 71 (431)
T ss_pred EEEEe-cCCCcchHHHHHHHHH--H-HHHHHHhCCCcEEEE-eechhhcc-------CCCCHHHHHHH-HHHHHHHHHHh
Confidence 34443 4899999999887442 1 223444458876443 34444331 12355444443 33467788889
Q ss_pred cccccc---cCCCCCHHHHHHHHHHHHHHHHcCC
Q psy7266 365 EIDFDY---FGRTSTPQQTEIVQHLFDRVHKAGF 395 (1175)
Q Consensus 365 gi~~D~---~~~T~~~~~~~~v~~~f~~L~~~G~ 395 (1175)
|++++. |..+.-|+|.+. .|++..+-..|.
T Consensus 72 GlDPek~~if~QSdvpeh~EL-~wiL~~it~~g~ 104 (431)
T PRK12284 72 GLDPERVTFYRQSDIPEIPEL-TWLLTCVAGKGL 104 (431)
T ss_pred CCCccceEEEECCcchhHHHH-HHHHHhhhhHHH
Confidence 999874 334556666544 555555544443
|
|
| >KOG1247|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00044 Score=77.47 Aligned_cols=35 Identities=49% Similarity=1.098 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCchhhhhhhHHHHHHHHHhhcCCCC
Q psy7266 979 KNSSSHKIGTPAPLFRKIEQAQVDEWKLKYGGQQN 1013 (1175)
Q Consensus 979 ~~~~~~~~g~~~~lf~ki~~~~~~~~~~~~~g~~~ 1013 (1175)
..++||.||+|.|||++|+++++++||+||||+|.
T Consensus 532 ~l~~gH~ig~~~pLFq~l~~~qiee~r~k~gg~q~ 566 (567)
T KOG1247|consen 532 RLLAGHRIGTPSPLFQKLDEDQIEEWRAKFGGQQS 566 (567)
T ss_pred eecCcCccCCccHHHHhcCHHHHHHHHHhhcCCCC
Confidence 46789999999999999999999999999999974
|
|
| >cd00935 GlyRS_RNA GlyRS_RNA binding domain | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0009 Score=54.55 Aligned_cols=45 Identities=38% Similarity=0.488 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHh
Q psy7266 1034 EELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMK 1078 (1175)
Q Consensus 1034 ~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~ 1078 (1175)
..|...|..||+.||.||..++.+.+++.+|..|..+|..++...
T Consensus 2 ~~l~~~v~~qg~~vR~lk~~~a~~~~~~~a~~~L~~~k~~l~~~~ 46 (51)
T cd00935 2 APLRAAVKEQGDLVRKLKEEGAPDVDIKKAVAELKARKKLLEDKE 46 (51)
T ss_pred hHHHHHHHHhhHHHHhhccccCcHHHHHHHHHHHHHHHHHhhhHh
Confidence 357899999999999999999999999999999999999887654
|
This short RNA-binding domain is found at the N-terminus of GlyRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix-turn-helix structure , which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. |
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0047 Score=69.58 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=41.5
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhcccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFD 369 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D 369 (1175)
-|||.|||||..+++. .+.++ +..|+++.+..+ |.|..-. ...++ +..+++...+..++..+|++++
T Consensus 7 ~PTG~lHLG~~~~al~---~~~~l-Q~ag~~~~~~Ia-D~ha~t~------~~~~~-~~~~~~~~~~~~~~lA~G~dp~ 73 (280)
T cd00806 7 QPSGSLHLGHYLGAFR---FWVWL-QEAGYELFFFIA-DLHALTV------KQLDP-EELRQNTRENAKDYLACGLDPE 73 (280)
T ss_pred CCCchhhHHHHHHHHH---HHHHH-HhCCCCEEEEec-chHHHhC------CCCCH-HHHHHHHHHHHHHHHHcCCCcc
Confidence 4889999999997554 23333 334888665543 4444311 11233 3455666667888888999875
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0035 Score=74.13 Aligned_cols=68 Identities=13% Similarity=0.051 Sum_probs=40.8
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
++++|.|+.+.+..- --+..-. +...+ ..+.+-.| ..+|.|||||.||.|+.+|=. .+++.++=++++
T Consensus 189 iq~gG~DQ~~ni~~g-rdl~~r~--~~~~~-~~lt~PlL~g~dG~KMsKS~~naI~L~d~~---tsp~~i~qki~~ 257 (410)
T PRK13354 189 LQIGGTDQWGNILMG-RDLQRKL--EGEEQ-FGLTMPLLEGADGTKMGKSAGGAIWLDPEK---TSPYEFYQFWMN 257 (410)
T ss_pred EEEecHHHHHHHHHH-HHHHHHh--CCCCc-eEeccCCccCCCCCccCCCCCCceeccCCC---CCHHHHHHHHHc
Confidence 788999997654331 1112222 22223 33334444 578999999999999998742 445555555554
|
|
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0035 Score=74.25 Aligned_cols=68 Identities=13% Similarity=-0.017 Sum_probs=41.2
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
++++|.|+.+++.. ---+..-. +... -..+..-+| ..+|+|||||.||.|+.+|-. .+++.++=++++
T Consensus 191 i~~gG~DQ~~ni~~-grdla~r~--~~~~-~~~l~~plL~~~~G~KMsKS~~naI~L~d~~---tsp~~i~qki~~ 259 (408)
T PRK05912 191 LQLGGSDQWGNILS-GRDLQRRY--GGKP-QFGLTMPLLTGLDGKKMGKSEGNAVWLDEEK---TSPYEMYQKWMN 259 (408)
T ss_pred EEeccHHHHHHHHH-HHHHHHHh--CCCC-eEEEecCCcCCCCCCcccCCCCCceeCCCCC---CCHHHHHHHHhc
Confidence 78889999764332 11122222 2221 222333344 578999999999999998732 456677766665
|
|
| >cd00935 GlyRS_RNA GlyRS_RNA binding domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0036 Score=50.99 Aligned_cols=43 Identities=26% Similarity=0.334 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhh
Q psy7266 1105 ALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSAL 1148 (1175)
Q Consensus 1105 ~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~ 1148 (1175)
.|...|..||+.||.||.++ +++..++.+|+.|..+|...++.
T Consensus 3 ~l~~~v~~qg~~vR~lk~~~-a~~~~~~~a~~~L~~~k~~l~~~ 45 (51)
T cd00935 3 PLRAAVKEQGDLVRKLKEEG-APDVDIKKAVAELKARKKLLEDK 45 (51)
T ss_pred HHHHHHHHhhHHHHhhcccc-CcHHHHHHHHHHHHHHHHHhhhH
Confidence 47789999999999999987 79999999999999999988654
|
This short RNA-binding domain is found at the N-terminus of GlyRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix-turn-helix structure , which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes. |
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.026 Score=65.14 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=43.2
Q ss_pred EEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 283 ~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
++|.++. -|||.+||||.. +++ .+.++++ .|+++.+..+ |.|+.-.- ..++ +..+.+...+..+|.
T Consensus 31 ~~v~~G~-~PTG~lHLG~~~-~~~---~~~~lq~-~g~~~~i~Ia-D~ha~~~~------~~~~-~~i~~~~~~~~~~~~ 96 (329)
T PRK08560 31 PKAYIGF-EPSGKIHLGHLL-TMN---KLADLQK-AGFKVTVLLA-DWHAYLND------KGDL-EEIRKVAEYNKKVFE 96 (329)
T ss_pred CEEEEcc-CCCCcchhhhhH-HHH---HHHHHHH-CCCeEEEEEc-cchhhcCC------CCCH-HHHHHHHHHHHHHHH
Confidence 3444443 588999999965 333 3566655 4887655443 33432110 0233 344555566778888
Q ss_pred hccccccc
Q psy7266 363 WFEIDFDY 370 (1175)
Q Consensus 363 ~lgi~~D~ 370 (1175)
.+|++.+.
T Consensus 97 A~G~dp~k 104 (329)
T PRK08560 97 ALGLDPDK 104 (329)
T ss_pred HcCCChhh
Confidence 99988763
|
|
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0094 Score=52.55 Aligned_cols=61 Identities=8% Similarity=-0.090 Sum_probs=49.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSC 62 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~ 62 (1175)
++||+.+.||+|.+++.+|...|++|+.+.++.... .+++..++|++ ..||..|.+-....
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v-~i~~~~iGg~~~~~ 69 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQI-FFNEKLVGGLTDLK 69 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEE-EECCEEEeCHHHHH
Confidence 579999999999999999999999999988775442 14577899999 47778777655544
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0074 Score=53.43 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=47.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------cC-CCCcccEEEeCCCcEEeCHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------LL-LSKTVPVLELDDGSQLFSAN 59 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~-P~g~vP~L~~~dG~~l~eS~ 59 (1175)
|+||+.+.||+|++++..+...|++|+.+.++-.... ++ +...+|+++.++|..+.++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 5799999999999999999999999988766544311 33 77899999878898887643
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.031 Score=52.71 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHhhhchhh-----hhhhhc------CCCCchHHHHHHHHHHHHHhc--CCcccCCCCCccchhHHHH
Q psy7266 70 TKNESAINQWLEWESVELFPS-----VLSFFD------NPKVLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTC 136 (1175)
Q Consensus 70 ~~~~a~v~~wl~~~~~~l~p~-----~~~~~~------~g~~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l~~~ 136 (1175)
..+|+..++...|..+.+.+. ....+. ........+.+++...+..|. ++||+|+ +||||..++.+
T Consensus 2 ~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~m 80 (117)
T PF14834_consen 2 RQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLALM 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHHH
Confidence 456666666656555555431 111111 112345677888888998888 8999996 99999999999
Q ss_pred HHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 137 VYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 137 L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.++...+ ..--+.+..|.++.-++|+|++-+..
T Consensus 81 l~Rl~~~g-----d~vP~~l~~Ya~~qwqrpsVQ~Wla~ 114 (117)
T PF14834_consen 81 LNRLVTYG-----DPVPERLADYAERQWQRPSVQRWLAL 114 (117)
T ss_dssp HHHHHTTT---------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHcC-----CCCCHHHHHHHHHHHCCHHHHHHHHH
Confidence 99975322 12237899999999999999997753
|
|
| >PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.02 Score=50.27 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=48.0
Q ss_pred CCchHHHHHHHHHhcCCCcE-EEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 8 NNVQTLKLLITAEFSTTKLD-VELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 8 ~sp~~~~v~ial~~~gi~~e-~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
.+|.|..+...+++.+.+.. +..+...+..++|.|++|+|...+|..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPWLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCCcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 67899999999999999932 33344445568899999999765899999999999998
|
In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane |
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.017 Score=50.76 Aligned_cols=55 Identities=18% Similarity=0.074 Sum_probs=43.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEE
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQL 55 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l 55 (1175)
|+||+.+.||+|.+++-+|...|++|+.+.++-.... ..+...||+++.+|+..+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~~~~ 60 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGDLSW 60 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCCcEE
Confidence 6899999999999999999999999999888754311 235568999975554333
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.017 Score=49.92 Aligned_cols=63 Identities=11% Similarity=-0.054 Sum_probs=51.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLY 64 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~Y 64 (1175)
++||+.+.||+|++++.+|...+++|+.+.++.... .+++..++|++ ..+|..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~-~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQI-FINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEE-EECCEEEecHHHHHHh
Confidence 479999999999999999999999998777765431 14577899999 5788999999887754
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.022 Score=50.21 Aligned_cols=63 Identities=11% Similarity=0.011 Sum_probs=50.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCC-cccEEEeCCCcEEeCHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSK-TVPVLELDDGSQLFSANQSCLY 64 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g-~vP~L~~~dG~~l~eS~aI~~Y 64 (1175)
++||+.+.||+|.+++.+|...|++|+.+.++..... ..... .+|++ ..+|..+.+...+.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v-~i~g~~igg~~~~~~~ 71 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQI-FIGDVHIGGCDDLYAL 71 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEE-EECCEEEeChHHHHHH
Confidence 5799999999999999999999999999888764311 12333 89999 5788889998888775
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.022 Score=49.67 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=48.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEE--eCHHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQL--FSANQSCLYL 65 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l--~eS~aI~~YL 65 (1175)
++||+.+.||+|.+++.++...|++|..+.++-... ..++...+|+|.. +|..+ +++.+|-++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-CCEEEeeCCHHHHHHHh
Confidence 579999999999999999999999888776654332 1357789999975 57777 5666665554
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.033 Score=48.39 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=45.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFS 57 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~e 57 (1175)
|++|+.+.||+|.+++.++...|++|..+.++.... .++|.+.+|+|+ .+|..|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~-~~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVV-IGDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEE-ECCEEEec
Confidence 579999999999999999999999999888775431 246889999996 45666654
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.026 Score=50.94 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=43.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEE
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQL 55 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l 55 (1175)
++||+.+.||+|.+++-+|...|++|+.+.++-.... ..+..+||+++. +|..+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~~~~~ 61 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA-GDLSW 61 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE-CCEEE
Confidence 4799999999999999999999999999888754321 347789999964 44433
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.048 Score=48.73 Aligned_cols=64 Identities=9% Similarity=-0.074 Sum_probs=52.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
++||+.+.||+|.+++-+++..|++|+.+.++..... ......+|++ ..+|..+.+...+.++-
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i-~i~g~~igg~~~~~~~~ 70 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQI-FIGDVHVGGCDDLYALD 70 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEE-EECCEEEcChHHHHHHH
Confidence 5899999999999999999999999999988765421 2356789999 57888888877776654
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >KOG1936|consensus | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.046 Score=62.39 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCCCCC---CCCCCCCC
Q psy7266 1105 ALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTNNTK---PNHSSKNS 1167 (1175)
Q Consensus 1105 ~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~~~~---~~~~~~~~ 1167 (1175)
.+...|..||+.+|.||+++ +++++++.+|+.+++++++. |......+.| |+|||||.
T Consensus 8 ~~~~~~~~~~~llr~l~~~~-a~~~~~~~~va~~~~~~~~~----~~~~~~~~~k~~lKtPKGTrD 68 (518)
T KOG1936|consen 8 TTRESISFQGILLRDLKSSC-ASPEQISEEVALILALKNGL----GRSGSIFKKKFSLKTPKGTRD 68 (518)
T ss_pred HHHHHHhhhHHHHhhhhhcc-CChhHhhHHHHHHHHHhccc----CCCCCCcCcceeecCCCCCCc
Confidence 46788999999999999998 89999999999999999998 4444433445 99999994
|
|
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.12 Score=46.56 Aligned_cols=57 Identities=11% Similarity=-0.032 Sum_probs=46.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--c------cCCCCcccEEEeCCCcEEeCH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--R------LLLSKTVPVLELDDGSQLFSA 58 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--~------~~P~g~vP~L~~~dG~~l~eS 58 (1175)
+++|+.++||+|.++.-+|...|++|+.+.++.... . .++..+||++. .||..+...
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~-i~~~~igg~ 67 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF-IGGKHVGGC 67 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE-ECCEEEeCc
Confidence 478999999999999999999999999988877662 1 34788999995 666566543
|
|
| >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.09 Score=61.53 Aligned_cols=52 Identities=19% Similarity=0.060 Sum_probs=31.9
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCc
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFG 608 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~ 608 (1175)
+++.|.|+=..|..= .-++... +. .+...+++-+| ..+|.|||||.||.++.
T Consensus 183 lq~GG~DQ~~ni~~g-rdl~rr~--g~-~~~~~lt~PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 183 LQLGGSDQWGNILAG-RDLIRRL--GQ-KKVVGLTTPLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred hhcCChHHHHHHHHH-HHHHHHh--CC-CCeEEEEeccccCCCCCcccccCCCceEc
Confidence 788999985554331 1122222 23 34455555555 58999999999995543
|
|
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.059 Score=45.37 Aligned_cols=54 Identities=17% Similarity=0.027 Sum_probs=43.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEE
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQL 55 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l 55 (1175)
++||+.++||+|.+++-.|...|++|+.+.++..... .....++|++. .||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~-i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVF-IDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE-ETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEE-ECCEEC
Confidence 4799999999999999999999999999888876411 23667899995 577654
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.2 Score=47.06 Aligned_cols=64 Identities=14% Similarity=0.000 Sum_probs=51.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc---------cCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR---------LLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~---------~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
+++|+.+.||+|.++.-+|...|++|+.+.++..... +....+||.+ +.+|..|.+...+....
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V-fi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV-FVGGKLVGGLENVMALH 82 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE-EECCEEEcCHHHHHHHH
Confidence 4689999999999999999999999999888754321 2356789999 68888888877776654
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.23 Score=44.44 Aligned_cols=65 Identities=14% Similarity=0.012 Sum_probs=53.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc---------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR---------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~---------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.+|+.+.||+|.+++-++...+++|+...++..+.. +....++|++ ..+|..+.++..|..+.-
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v-~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNV-FIGGKFIGGCDDLMALHK 75 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE-EECCEEEcCHHHHHHHHH
Confidence 4689999999999999999999999998888865421 2345689999 578899999998888754
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.23 Score=45.13 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=51.3
Q ss_pred CEEEecCCCchHHHHHHHHHh-----cCCCcEEEEecCcc---cc---cC--CCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEF-----STTKLDVELVDVAD---AR---LL--LSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~-----~gi~~e~~~v~~~~---~~---~~--P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+++|+.+.||+|.+++-+|.. .|++|+.+.++... .+ .. +..+||++ ..||..+.+...|..++.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~i-fi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQI-FVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEE-EECCEEEcCHHHHHHHHH
Confidence 478999999999999999999 78999988777532 11 11 23589999 478999999999988864
|
|
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.29 Score=44.70 Aligned_cols=65 Identities=11% Similarity=-0.009 Sum_probs=48.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcC-----CCcEEEEecCcc---cc---c-C-CCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFST-----TKLDVELVDVAD---AR---L-L-LSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~g-----i~~e~~~v~~~~---~~---~-~-P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+++|+.+.||+|.+++-+|...+ ++|+.+.++... .. . + ...+||++ ..||..|.++..|..|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i-fi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQI-FVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE-EECCEEecCHHHHHHHHH
Confidence 47999999999999999999885 456665554321 11 1 1 23589999 578899999999998875
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.63 Score=41.73 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=52.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCC--cEEEEecCcccc---------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTK--LDVELVDVADAR---------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~--~e~~~v~~~~~~---------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.+|+.+.||+|.+++-++...+++ |+...++..... .....++|++ ..+|..+.++..+.++..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v-~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI-FINGKFIGGCSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE-EECCEEEcCHHHHHHHHH
Confidence 4789999999999999999999998 888887764311 2345689999 578899999988887764
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.5 Score=45.17 Aligned_cols=62 Identities=6% Similarity=-0.062 Sum_probs=48.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCC---CcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTT---KLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCL 63 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi---~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~ 63 (1175)
+++|+.+.||+|.+++-+|...|+ +|+.+.++-... .+....+||.+ +.+|..|.+...+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I-fI~g~~iGG~ddl~~ 88 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI-FFGKTSIGGYSDLLE 88 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE-EECCEEEeChHHHHH
Confidence 468999999999999999999999 788877774211 13456689999 578888888766655
|
|
| >PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=91.78 E-value=2.4 Score=41.03 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCCCCCC------CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 658 INRALSFIEKNYGSTIPEI------SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 658 ~~r~~~~~~~~~~~~~p~~------~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
..|+.+++.+.-....... ..++.++.++..+..+...+..+++.++++..+..+++++..+|.|++.++-
T Consensus 5 ~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~I 81 (119)
T PF05746_consen 5 YARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVRI 81 (119)
T ss_dssp HHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-S
T ss_pred HHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4577777776533222111 1356678899999999999999999999999999999999999999998754
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A. |
| >PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS) | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.5 Score=42.15 Aligned_cols=108 Identities=19% Similarity=0.345 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEE-EeCCCcEEeCHHHHHHHHcCCChH-HHHHHHHHHHHHhhhchh
Q psy7266 12 TLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVL-ELDDGSQLFSANQSCLYLSKFDTK-NESAINQWLEWESVELFP 89 (1175)
Q Consensus 12 ~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L-~~~dG~~l~eS~aI~~YL~p~~~~-~~a~v~~wl~~~~~~l~p 89 (1175)
-+++.+++.+..-.+++.. + +-..-|.| ...+|..|+|++||+|||+..... +.... +|+...+..
T Consensus 12 NLKlalA~~~~~~~lk~~v-~-------ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~~es~e~----e~a~~~lE~ 79 (122)
T PF09635_consen 12 NLKLALALEYAQKDLKLEV-N-------EDESGPLLKDKKSGFELFEPNAIVRYLANDFEGQESIEY----EFALSSLEN 79 (122)
T ss_dssp HHHHHHHHHH--STT--EE---------SS--S--EEE-S--S----HHHHHHHHTT--TTTTSHHH----HHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCeeee-C-------CccccceeeecCCceEEecccHHHHHHHhhcCCcchHHH----HHHHHHHHH
Confidence 4577788877655454322 2 11134677 456899999999999999843221 11111 122222222
Q ss_pred hhhhhhcCCCCchHHHHHHHH-HHHHHhcCCcccCCCCCccchhHHHHHH
Q psy7266 90 SVLSFFDNPKVLPDNLKTKLN-VLNEAISNSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 90 ~~~~~~~~g~~~~~~l~~~L~-~Le~~L~~~fLvG~~lTlADi~l~~~L~ 138 (1175)
.+.. .....+.+..+.. .|+++|. -....+|.++|+++..++
T Consensus 80 ~ly~----k~~~~e~v~~~~~k~l~~yl~---~~~e~lsAt~lIlFAn~Y 122 (122)
T PF09635_consen 80 VLYH----KSNKKEHVESAVNKSLDNYLT---SLKEPLSATQLILFANVY 122 (122)
T ss_dssp GGGS----SS--HHHHHHHHHHHHHHT-S------SS--HHHHHHHHHHH
T ss_pred HHhc----ccccHHHHHHHHHHhHHHhhh---hhcCCCCHHHheeeeecC
Confidence 2211 2234455555444 5555442 245789999999987653
|
This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A. |
| >PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.51 Score=46.57 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCH
Q psy7266 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLP 167 (1175)
Q Consensus 103 ~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P 167 (1175)
.+++..|..|+..|. .....| ++|+-||.+|+.|+.+..... ..=-|+|.+|+++|.+.-
T Consensus 62 ~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivkg----i~~P~~V~~Y~~~~s~~t 122 (132)
T PF04399_consen 62 AELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVKG----IQWPPKVRAYMDRMSKAT 122 (132)
T ss_dssp HHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCTT----S---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhccC----CcCCHHHHHHHHHHHHHc
Confidence 456788888888887 555555 899999999999999754332 122389999999998643
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A. |
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.94 Score=53.02 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=53.1
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
+++++|.++. -|||.+||||... -..+.++++ .|+++.+.. .|.|..- . .+.++. .++++...+..
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~~----~~~~~~lQ~-~g~~~~i~I-aD~ha~~-----~-~~~~~e-~~~~~~~~~~~ 129 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKMV----FDELKWHQE-FGANVYIPI-ADDEAYA-----A-RGLSWE-ETREWAYEYIL 129 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHHH----HHHHHHHHh-cCCCEEEEe-cchHHHh-----c-CCCCHH-HHHHHHHHHHH
Confidence 4566666665 5779999999752 334555555 788865554 4444321 1 134544 34455555677
Q ss_pred HHhhccccccc---cCCCCCHHHHHHHH
Q psy7266 360 VYEWFEIDFDY---FGRTSTPQQTEIVQ 384 (1175)
Q Consensus 360 ~~~~lgi~~D~---~~~T~~~~~~~~v~ 384 (1175)
++..+|++.+. |..+.-+.|.+.++
T Consensus 130 ~~lA~G~Dp~k~~i~~qS~~~~~~~l~~ 157 (368)
T PRK12285 130 DLIALGFDPDKTEIYFQSENIKVYDLAF 157 (368)
T ss_pred HHHHhCCCccceEEEECCchHHHHHHHH
Confidence 88899999874 22344444444433
|
|
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.42 Score=53.67 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=42.0
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
++++|.|+..++..-- -++.-. ++..| ..+.+.+| ..+|.|||||.+|.++ ..+.+ +++.++=++.+
T Consensus 154 l~~~G~DQ~~~i~~~r-d~a~r~--~~~~~-~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~d---sp~~i~~Ki~~ 221 (269)
T cd00805 154 LQLGGSDQRGNITLGR-DLIRKL--GYKKV-VGLTTPLLTGLDGGKMSKSEGNAIW-DPVLD---SPYDVYQKIRN 221 (269)
T ss_pred eeEecHHHHHHHHHHH-HHHHHh--CCCCc-EEEeeccccCCCCCcccCCCCCccc-ccCCC---CHHHHHHHHHc
Confidence 7889999986654421 111112 23333 33456666 6899999999999997 44433 46666666665
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=88.86 E-value=1.1 Score=41.88 Aligned_cols=58 Identities=9% Similarity=-0.098 Sum_probs=44.5
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
+.||+|.+++-+|...|++|+.+.++-... .+....+||.+ +.||..|.+...+....
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v-fi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL-YVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEE-EECCEEEeChHHHHHHH
Confidence 789999999999999999999877753321 13455689999 58888888877766543
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.84 Score=44.72 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcC
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKL 166 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~ 166 (1175)
..+++..|..|+..|. ... ++..+|+-||.+|+.|+.+..... ..=-++|.+|+++|++.
T Consensus 62 i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vkg----i~~P~~V~~Y~~~~s~~ 122 (128)
T cd03199 62 IAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTLVKG----LVFPPKVKAYLERMSAL 122 (128)
T ss_pred HHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhcC----CCCCHHHHHHHHHHHHH
Confidence 3567888888888886 444 456899999999999999754332 12237899999999865
|
coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.4 Score=40.57 Aligned_cols=57 Identities=9% Similarity=-0.110 Sum_probs=45.2
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEEeCHHHHHHH
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQLFSANQSCLY 64 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l~eS~aI~~Y 64 (1175)
+.||+|.+++-+|...|++|+.+.++..... .....++|++ +.||..|.+...+..+
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v-fi~g~~iGG~~~l~~l 83 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQL-YVNGELVGGCDIVKEM 83 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE-EECCEEEeCHHHHHHH
Confidence 6899999999999999999999887644311 3355689999 5788888887777664
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >PLN02734 glycyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=87.78 E-value=0.46 Score=59.11 Aligned_cols=45 Identities=40% Similarity=0.540 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHH
Q psy7266 1033 VEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAM 1077 (1175)
Q Consensus 1033 ~~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~ 1077 (1175)
...|...|++||+.||.||.+++.+.+++.+|..|..+|.++.+.
T Consensus 9 ~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 53 (684)
T PLN02734 9 LAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSAL 53 (684)
T ss_pred HHHHHHHHHHhHHHHhhhhhccCchHHHHHHHHHHHHHHHhhhhh
Confidence 567889999999999999999999999999999999998887655
|
|
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=87.27 E-value=2 Score=50.51 Aligned_cols=78 Identities=13% Similarity=0.075 Sum_probs=47.2
Q ss_pred CCcEEEEccCCCCCC-CCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNN-VPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG-~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
+++++|.++. -||| .+||||+.. ...+..+++..|. .+++.-+|. +..+.. +.+. +.++++.....
T Consensus 71 ~~~~~vYtG~-~PSg~~lHlGHlv~----~~~~~~lQ~~~~~-~~~I~iaD~-----e~~~~~-~~~~-e~i~~~~~en~ 137 (383)
T PLN02486 71 GEKFYLYTGR-GPSSEALHLGHLIP----FMFTKYLQDAFKV-PLVIQLTDD-----EKFLWK-NLSV-EESQRLARENA 137 (383)
T ss_pred CCCeEEEeCC-CCCCccccHHHHHH----HHHHHHHHHhCCC-eEEEEecCH-----HHHhhc-CCCH-HHHHHHHHHHH
Confidence 4567777765 6898 599999774 3344444444455 444445565 233333 4554 44455555566
Q ss_pred HHHhhccccccc
Q psy7266 359 EVYEWFEIDFDY 370 (1175)
Q Consensus 359 ~~~~~lgi~~D~ 370 (1175)
.++..+|++++.
T Consensus 138 ~~iiA~G~dp~k 149 (383)
T PLN02486 138 KDIIACGFDVER 149 (383)
T ss_pred HHHHHhCCCCcc
Confidence 778889988763
|
|
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=86.97 E-value=0.48 Score=54.01 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=33.7
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcc----cCeEEEeecee-ecCCC-cccccCCC-ccCchhh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYT----KVNHIMATEYL-NYEDG-KFSKSRGT-GVFGNNA 611 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~----~p~~i~~~g~l-~~~G~-KMSKS~GN-~v~~~d~ 611 (1175)
+.++|.|+..++..-- -+.... +.. .|..++.. ++ ..+|. |||||.+| .|++.|-
T Consensus 152 ~~~~G~DQ~~~~~l~r-d~a~k~--~~~~~~~~p~~l~~~-~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 152 LVPGGIDQRGHIELAR-DLARKF--NYKEIFPKPAGLTSP-LLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp EEEEEGGGHHHHHHHH-HHHHHH--THHSTSSS-EEEEET-CBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred cccccchHHHHHHHHH-HHHhhh--cccccccCchheeec-cccccCCccccCccCCccEEEEecc
Confidence 7899999986544321 111112 223 45455444 55 58898 99999999 8877764
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PRK14714 DNA polymerase II large subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=1.2 Score=57.93 Aligned_cols=96 Identities=16% Similarity=0.253 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHH---HHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCC
Q psy7266 379 QTEIVQHLFDRV---HKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQC 455 (1175)
Q Consensus 379 ~~~~v~~~f~~L---~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~ 455 (1175)
..+.++++.... .+.+-++.-+.....||.|++.... ..||.||..-.--..|..||..+.+.+.....|.+|
T Consensus 640 ~qR~I~kAa~~a~~~~d~~G~ieVEV~~rkCPkCG~~t~~----~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~C 715 (1337)
T PRK14714 640 AQRDVAKAAKHAPDMSDEGGVIEVEVGRRRCPSCGTETYE----NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRC 715 (1337)
T ss_pred ccccHHHHHHhhhhccccCCeEEEEEEEEECCCCCCcccc----ccCcccCCcCCCceeCccCCCccCCCccccccCCCC
Confidence 344555665433 3344444556667899999987543 379999975433348999999765443335589999
Q ss_pred CCccEEeecccccccchhHHHHHHH
Q psy7266 456 SQAPTVKSSTQLFLELPKIEDKLQS 480 (1175)
Q Consensus 456 ~~~~~~~~~~qwfl~l~~~~~~l~~ 480 (1175)
|.++..... .=|++..+-...++
T Consensus 716 Gtplv~~~~--~~i~~~~~~~~A~~ 738 (1337)
T PRK14714 716 DVELTPYQR--RTINVKEEYRSALE 738 (1337)
T ss_pred CCcccccce--EEecHHHHHHHHHH
Confidence 988774322 23565554333333
|
|
| >PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function | Back alignment and domain information |
|---|
Probab=85.32 E-value=1.5 Score=44.51 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=23.0
Q ss_pred HHHHHHHcCCCcccccccCCcchHHHHHHHHcC
Q psy7266 311 FSRFCRLVNRNTLYVSGTDEYGTATETKALEEG 343 (1175)
Q Consensus 311 ~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g 343 (1175)
++||+|+.||+|.+..+.++..+ ...|.++|
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~~i--l~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDDEI--LELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChHHH--HHHhhhCC
Confidence 58999999999999997755443 34555554
|
The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges. |
| >PLN02734 glycyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=82.71 E-value=1.5 Score=54.78 Aligned_cols=46 Identities=39% Similarity=0.455 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhc
Q psy7266 1103 VKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALT 1149 (1175)
Q Consensus 1103 ~~~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~ 1149 (1175)
...|...|+.||+.||.||.++ +++..++.+|+.|..+|.+..++.
T Consensus 9 ~~~~~~~~~~~~~~~r~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 54 (684)
T PLN02734 9 LAEKQAAVTAQGNAVRALKASK-ADKAEIDAAIEKLKALKLEKSALE 54 (684)
T ss_pred HHHHHHHHHHhHHHHhhhhhcc-CchHHHHHHHHHHHHHHHhhhhhh
Confidence 4568899999999999999987 899999999999999998877653
|
|
| >cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs | Back alignment and domain information |
|---|
Probab=80.82 E-value=4 Score=41.31 Aligned_cols=64 Identities=17% Similarity=0.091 Sum_probs=50.1
Q ss_pred CEEEecC------CCchHHHHHHHHHhcCCCcEEEEecCcccc------cC----CCCcccEEEeCCCcEEeCHHHHHHH
Q psy7266 1 MKCLSNR------NNVQTLKLLITAEFSTTKLDVELVDVADAR------LL----LSKTVPVLELDDGSQLFSANQSCLY 64 (1175)
Q Consensus 1 m~Ly~~~------~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~----P~g~vP~L~~~dG~~l~eS~aI~~Y 64 (1175)
+.||+.+ .+|++.+++-+|...+++|+.+.|+..... +. ...++|.+ +.+|..|.+...+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV-FI~G~~IGG~del~~L 80 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRV-FVDGRYLGGAEEVLRL 80 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE-EECCEEEecHHHHHHH
Confidence 4689888 899999999999999999999888765421 11 23689999 5888988887777664
Q ss_pred H
Q psy7266 65 L 65 (1175)
Q Consensus 65 L 65 (1175)
-
T Consensus 81 ~ 81 (147)
T cd03031 81 N 81 (147)
T ss_pred H
Confidence 3
|
This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. |
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=80.79 E-value=1.5 Score=51.53 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=38.3
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
-|||.+||||. ++..--+..++ ..|++|.+..+ |-|..-. ...|.++.++ +.....+..+|..+|++.+.
T Consensus 74 ~PTG~lHLG~g---~i~~~~~~~lq-~~G~~v~~~Ia-D~hA~~~----~~~g~~l~~i-~~~~~~~~~~~~A~GlDp~k 143 (383)
T PTZ00126 74 EPSGRMHIAQG---ILKAINVNKLT-KAGCVFVFWVA-DWFALLN----NKMGGDLEKI-RKVGEYFIEVWKAAGMDMDN 143 (383)
T ss_pred CCCCcccccch---HhHhHHHHHHH-hCCCeEEEEEc-cceeecC----CCCCCCHHHH-HHHHHHHHHHHHHhCCCccc
Confidence 48999999992 22122333443 44888766644 2222110 0122334333 44555567778889988764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 765 bits (1976), Expect = 0.0
Identities = 185/621 (29%), Positives = 305/621 (49%), Gaps = 41/621 (6%)
Query: 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALE 341
++TSALPY N H G++ G L AD+F R+ RL + +++ GTDE+GT +AL+
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 342 EGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASV 401
EG +PR+I D++ + ++ +I FD+FGRT P ++ Q F + ++ G
Sbjct: 63 EGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVT 122
Query: 402 EQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV 461
+Q +C FL DRFV G CP C ED +GDQC+ CG+ + LI PRC C + +
Sbjct: 123 KQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISF 182
Query: 462 KSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVP 521
+ S ++++ ++L+ W+ + W N + + +W+++GL+ R ITRDL WGIPVP
Sbjct: 183 RDSAHYYIKMQDFAERLKRWIEKQP--WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVP 240
Query: 522 L--PGFENKYS----------LSSSPSLVQFLPTA--------TPQSKITLYQFMAKDNV 561
L + K +S + + + + + F+ KDN+
Sbjct: 241 LDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNI 300
Query: 562 PFHSIMFPATLVAAGDQ--------YTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKD 613
PFH+I +PA L+A G + I A EYL E KFS SR ++ + D
Sbjct: 301 PFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLD 360
Query: 614 TGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTI 673
PAD R+YL + PE +D+ FS+ D + N EL+NNLGNF++RAL+F+ + + +
Sbjct: 361 V-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVV 419
Query: 674 PEISPIHE-DFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLF 732
PE + E D L I + ++ + +D ++ +++++ + N+Y +QPW
Sbjct: 420 PERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQPWKTA 479
Query: 733 KGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQ 792
K R T + I Q+ L +LL P++P + I L +K
Sbjct: 480 KEDKV---RTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKRWEFRE----- 531
Query: 793 FLPTGHKIGTPAPLFRKIEQAQVDEWKLKYGGQQNKESSNNKKEKKQAEITFSSVEELEA 852
LP GHK+ P LF+K+ Q+ + L Y + N E + +K V + +
Sbjct: 532 -LPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKF 590
Query: 853 AVATQGNLVRQVKSSGVEKSE 873
+ L R K +++ +
Sbjct: 591 GDEAEVVLRRVYKDIKLKEKK 611
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 5e-07
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 984 HKIGTPAPLFRKIEQAQVDEWKLKYGGQQNKESSNNKKEKKQAEITFSSVEELEAAVATQ 1043
HK+ P LF+K+ Q+ + L Y + N E + +K V + + +
Sbjct: 536 HKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFGDEAE 595
Query: 1044 GNLVRQVKSSGVEKSE 1059
L R K +++ +
Sbjct: 596 VVLRRVYKDIKLKEKK 611
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 729 bits (1885), Expect = 0.0
Identities = 133/558 (23%), Positives = 235/558 (42%), Gaps = 36/558 (6%)
Query: 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETK 338
IL+T A PY N HLG+++ + ADV+ R+ R+ ++ D +GT K
Sbjct: 16 VAKKILVTCASPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLK 74
Query: 339 ALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSS 398
A + G+TP Q+ + H+ + F I +D + T + + ++ + ++ R+ + GF +
Sbjct: 75 AQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKN 134
Query: 399 ASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQA 458
++ QL+ + FL DRFV+G CPKC+ D GD C+ CG + ELI+P+
Sbjct: 135 RTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 194
Query: 459 PTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGI 518
P ++ S F +LP + LQ+W S + W + GL+ I+RD +
Sbjct: 195 PVMRDSEHFFFDLPSFSEMLQAWTR--SGALQEQVANKMQEWFESGLQQWDISRDAPY-F 251
Query: 519 PVPLPGFENKYS----------LSSSPSLVQFLPTAT-------PQSKITLYQFMAKDNV 561
+P KY + S +L + S LY F+ KD V
Sbjct: 252 GFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIV 311
Query: 562 PFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIF 621
F S+ +PA L + + K +++ Y+ K SKSRGT + + + AD
Sbjct: 312 YFLSLFWPAMLEGSN--FRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDADSL 368
Query: 622 RFYLLY-VRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIH 680
R+Y + D + +D + N++++N + N +R FI K + +
Sbjct: 369 RYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASEL--- 425
Query: 681 EDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKS 740
D L + + +R I+ ++ N+Y+ Q PWV+ K + +
Sbjct: 426 ADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAK-QEGRDA 484
Query: 741 RASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKI 800
+ + + +L L P +P + L + +Q GHK+
Sbjct: 485 DLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN-------TELTWDGIQQPLLGHKV 537
Query: 801 GTPAPLFRKIEQAQVDEW 818
L+ +I+ QV+
Sbjct: 538 NPFKALYNRIDMRQVEAL 555
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 299 bits (768), Expect = 4e-90
Identities = 136/552 (24%), Positives = 228/552 (41%), Gaps = 70/552 (12%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL 344
IT+A+ Y N VPH+G+ ++ D +RF RL + Y++GTD +G A +EG+
Sbjct: 16 ITTAIAYPNGVPHIGHAY-EYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGI 74
Query: 345 TPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQL 404
++ + + + + E I FD F RTS E + ++ R+ AG + +
Sbjct: 75 PAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGW 134
Query: 405 HCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSS 464
+ + +RF + + + + T
Sbjct: 135 YSIRDERFFTEN-----------------------ETTEQPDG-TRIATETGAPVTWTEE 170
Query: 465 TQLFLELPKIEDKLQSWVSETSDQWSSNAR---VICKAWLKDGLKPRCITR-DLKWGIPV 520
F L D+L + E + +AR ++ +++ GLK I+R WG+PV
Sbjct: 171 QTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIV--SFVSGGLKDLSISRTTFDWGVPV 228
Query: 521 PLPGFENK------------------YSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVP 562
P + + S S ++ P + KD +
Sbjct: 229 P---DHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPAD--------LHMIGKDIIR 277
Query: 563 FHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDT-GLPADIF 621
FH++ +PA L++AG K I A +L K SKS G V N DT GL D
Sbjct: 278 FHTVYWPAFLMSAGLPLPK--RIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGL--DQV 333
Query: 622 RFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHE 681
R++LL P QD S++ + + N++L N LGN R+LS + KN G+ +P+ +
Sbjct: 334 RYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTD 393
Query: 682 -DFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFK-GSPEQK 739
D LLA + L D + + I ++ N+Y Q+PWVL K + E +
Sbjct: 394 EDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQ 453
Query: 740 SRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHK 799
R TVL +V + SLLL P MP + + + LG + S ++ + G
Sbjct: 454 QRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQPTDERDFS---AIANRIKPGTS 510
Query: 800 IGTPAPLFRKIE 811
+ P+ +F + +
Sbjct: 511 LPAPSGIFPRYQ 522
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 294 bits (756), Expect = 2e-88
Identities = 123/578 (21%), Positives = 216/578 (37%), Gaps = 71/578 (12%)
Query: 257 VAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCR 316
+A + + IT+A+ Y N PH+G+ +++ D +RF R
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAY-ELIATDAMARFQR 59
Query: 317 LVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTST 376
L + +++GTDE+G A +EG+TPR + D+ + R + E D + RTS
Sbjct: 60 LNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSE 119
Query: 377 PQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCD 436
+ + Q ++ + G + + + + +
Sbjct: 120 ERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEE-------------------- 159
Query: 437 GCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNAR-- 494
+ + R F L +DKL R
Sbjct: 160 ---ETEVRAD--GVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRN 214
Query: 495 -VICKAWLKDGLKPRCITR-DLKWGIPVPLPGFENKYS-----------------LSSSP 535
++ +++K GLK I+R WGIPVP + K+ ++
Sbjct: 215 EIV--SFVKSGLKDLSISRTTFDWGIPVP---GDEKHVMYVWVDALTNYITALGYPDTTD 269
Query: 536 SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYED 595
+ P + KD FH++ +PA L++A K + A +L
Sbjct: 270 ERWAYWPAN--------AHIIGKDISRFHAVYWPAFLMSAQLPLPK--RVFAHGFLFNRG 319
Query: 596 GKFSKSRGTGVFGNNAKDT-GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNL 654
K SKS G + + GL D R++L+ P QD S+S + + + N++L N+L
Sbjct: 320 EKMSKSVGNVIDPFELVERYGL--DQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDL 377
Query: 655 GNFINRALSFIEKNYGSTIPEISPIHE-DFLLLALINRELSAYYSVLDKAKLRDGIRYIL 713
GN R+LS I KN +P+ E D +L + L +D L + I
Sbjct: 378 GNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIF 437
Query: 714 NISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIAS 773
+ N+Y Q+PW L K +R TVL + +V + +++ P++P +A +
Sbjct: 438 AVVAEANRYFAGQEPWALRK---TDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLD 494
Query: 774 QLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIE 811
L K + + L G + P P+F +
Sbjct: 495 ILAVPADKRQFADVLA--SPLAGGTDLPAPQPVFPRYV 530
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 290 bits (744), Expect = 4e-87
Identities = 136/547 (24%), Positives = 233/547 (42%), Gaps = 79/547 (14%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL 344
+T+ + YVN+VPHLG+ ++AD +R+ RL + + +++GTDE+G + KA E G+
Sbjct: 9 VTTPIYYVNDVPHLGHAY-TTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGI 67
Query: 345 TPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQL 404
+P+++ D+ ++++E+ +I++ F RT+ P + VQ +F+ +K G E
Sbjct: 68 SPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGW 127
Query: 405 HCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQ-PRCKQCSQAPTVKS 463
+C C+ F ++ EL + C +
Sbjct: 128 YCVGCEEFKSEA-----------------------------ELAEDHTCPIHQKKCEYIK 158
Query: 464 STQLFLELPKIEDKLQSWVSETSDQWSSNAR---VICKAWLKDGLKPRCITRD---LKWG 517
F L K +DKL + + + R +I +++K GLK +TR +KWG
Sbjct: 159 EPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEII--SFVKQGLKDLSVTRPRSRVKWG 216
Query: 518 IPVPLPGFENKYS-----------LSSSPSLVQ-FLPTATPQSKITLYQFMAKDNVPFHS 565
IPVP F+ +++ +S+ V+ + P + KD + FH+
Sbjct: 217 IPVP---FDPEHTIYVWFDALFNYISALEDKVEIYWPAD--------LHLVGKDILRFHT 265
Query: 566 IMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDT-GLPADIFRFY 624
+ +PA L++ G + K + A + E K SK+ G V GL D R++
Sbjct: 266 VYWPAFLMSLGYELPK--KVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGL--DEVRYF 321
Query: 625 LLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFL 684
LL P QD FS + + + N EL N +GN +R ++ K G + D
Sbjct: 322 LLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGA----RDEE 377
Query: 685 LLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRAST 744
+ + Y + ++K I IL + Y N+Y+ +QPW L K +K
Sbjct: 378 YAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNK--ERKKEELQK 435
Query: 745 VLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPA 804
VL L ++L+ LL P P+ LG L + +K+G
Sbjct: 436 VLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK------EFLKELKPYSKNTYKLGERK 489
Query: 805 PLFRKIE 811
LF K E
Sbjct: 490 ILFPKRE 496
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 2e-84
Identities = 120/561 (21%), Positives = 198/561 (35%), Gaps = 59/561 (10%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL 344
+TS + YVN PH+G++ L DV R+ R+ ++GTDE+G A ++ +
Sbjct: 13 VTSPIYYVNAAPHIGHVY-STLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQV 71
Query: 345 TPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQL 404
+P ++ +E + DYF RT+ Q +V+ L+ ++ + G E
Sbjct: 72 SPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGW 131
Query: 405 HCAQCDRFLADR-FVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKS 463
+ + FL + +GV + T S
Sbjct: 132 YSISDESFLTPQNITDGVDKDGN---------------------PCKVSLESGHVVTWVS 170
Query: 464 STQLFLELPKIEDKLQSWVSETSDQWSSNARV-ICKAWLKDGLKPRCITRD----LKWGI 518
L ++L W R ++ GL ++R W I
Sbjct: 171 EENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAI 230
Query: 519 PVP----------LPGFENKYSLSSSPSLVQFLPTATPQSKITL------YQFMAKDNVP 562
PVP L N + S + L + KD +
Sbjct: 231 PVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILK 290
Query: 563 FHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFR 622
FH+I +PA L++AG K I+A + + K SKS G + D +
Sbjct: 291 FHAIYWPAFLLSAGLPLPK--KIVAHGWWTKDRKKISKSLGNVFDPVEKAEE-FGYDALK 347
Query: 623 FYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHE- 681
++LL + D +S +++ + N EL + LGN + R S N P + E
Sbjct: 348 YFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAK-INVNGEWPSPAAYTEE 406
Query: 682 DFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSR 741
D L+ LI ++ I + ++ R N Y+ PW L K R
Sbjct: 407 DESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVK---TDPER 463
Query: 742 ASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIG 801
TVL I + + +LLLSP +P + I LG + + +P G ++G
Sbjct: 464 LRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIENFEFGA-VPPGTRLG 522
Query: 802 T---PAPLFRKIEQAQVDEWK 819
LF K + K
Sbjct: 523 PAVEGEVLFSKRS---TENTK 540
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 280 bits (718), Expect = 2e-83
Identities = 123/549 (22%), Positives = 211/549 (38%), Gaps = 80/549 (14%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL 344
+T+ + YVN PHLG+ + AD +R+ RL T +++GTDE+G A G
Sbjct: 7 VTTPIYYVNAEPHLGHAY-TTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 345 TPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQL 404
P+ D+ + ++ I +D F RT+ + ++VQ + +V++AG E L
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 405 HCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSS 464
+C C+RF ++ EL++ C + +
Sbjct: 126 YCVSCERFYTEK-----------------------------ELVEGLCPIHGRPVERRKE 156
Query: 465 TQLFLELPKIEDKLQSWVSETSDQWSSNAR---VICKAWLKDGLKPRCITRD---LKWGI 518
F + K LQ ++ E D V+ A L + + I+R + WGI
Sbjct: 157 GNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVL--AMLAEPIGDLSISRPKSRVPWGI 214
Query: 519 PVPLPGFENKYSL----------------SSSPSLVQFLPTATPQSKITLYQFMAKDNVP 562
P+P ++ + + F P A + + KD +
Sbjct: 215 PLP---WDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHA--------WHLIGKDILK 263
Query: 563 FHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDG-KFSKSRGTGVFGNNAKDT-GLPADI 620
H++ +P L AAG + H+ +L DG K SK+ G V + G D
Sbjct: 264 PHAVFWPTMLKAAGIPMYR--HLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGR--DA 319
Query: 621 FRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIH 680
R+YLL P QDT S + L T+ ++L ++LGN + R + + + IPE
Sbjct: 320 LRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPV--- 376
Query: 681 EDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKS 740
LA ++ + K + + + N+Y+ ++PW LFK ++
Sbjct: 377 -AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFK---KEPE 432
Query: 741 RASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKI 800
A VL + + + S+LL+P MP + + LG +
Sbjct: 433 EARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAERW--GLAEPRPIP 490
Query: 801 GTPAPLFRK 809
LF K
Sbjct: 491 EEAPVLFPK 499
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 281 bits (720), Expect = 6e-83
Identities = 112/584 (19%), Positives = 208/584 (35%), Gaps = 81/584 (13%)
Query: 266 PLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYV 325
L +T + T+ + YVN PH+G++ L DV R+ R+ +
Sbjct: 11 TLEAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVY-STLIVDVLGRYHRVKGEEVFVM 69
Query: 326 SGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQH 385
+GTDE+G A ++G++P + ++ ++ D +YF RT+ P ++VQ
Sbjct: 70 TGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQD 129
Query: 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADR-FVEGVCPKCRYEDARGDQCDGCGQLINA 444
++ ++ G E + + FL + +GV +
Sbjct: 130 IWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGK------------------ 171
Query: 445 IELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNAR---VICKAWL 501
+ T L ++L + + + R VI +
Sbjct: 172 ---PCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVI--KTV 226
Query: 502 KDGLKPRCITRD----LKWGIPVPLPGFENKY-------------SLSSSPSLVQFLPTA 544
+ GL I+R + W IPVP + ++ + + + T
Sbjct: 227 EKGLFDLSISRKRESVMNWSIPVP---GDERHCIYVWLDALFNYYTGALTRVATDGTETL 283
Query: 545 TPQSKITLY-----QFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFS 599
+ KD + FH+I +PA L++A + +++ + + K S
Sbjct: 284 DEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPE--RLVSHGWWTKDHKKIS 341
Query: 600 KSRGTGV--------FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELL 651
KS G FG D +++L+ D +S +++ + N EL
Sbjct: 342 KSLGNAFDPVEKAKEFG---------IDALKYFLMRESNFQDDGDYSDKNMVARLNGELA 392
Query: 652 NNLGNFINRALSFIEKNYGSTIPEISPIHE-DFLLLALINRELSAYYSVLDKAKLRDGIR 710
+ LGN ++R ++ N PE + E D L+A +N ++ +
Sbjct: 393 DTLGNLVSRCVAPK-INVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALI 451
Query: 711 YILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTAST 770
I ++ R N Y+ PW L K +R TVL + + + ++ L P MP A
Sbjct: 452 AIFDVLRSLNAYVTENAPWKLVK---MDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKE 508
Query: 771 IASQLGASHLKYSLSSSPSLVQFLPTGHKIGT---PAPLFRKIE 811
I LG + + G KI +F+K+
Sbjct: 509 IMDALGVPEAARVGMENYLFGI-VKPGTKIAGLAEGQVVFQKVT 551
|
| >1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 Length = 219 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 6e-20
Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 32/198 (16%)
Query: 9 NVQTLKLLITAEFSTTKLDVELVDV---ADARLLLS--KTVPVLELDDGSQLFSANQSCL 63
N + + KLDV++V A+ K VP G +L A
Sbjct: 9 NFRIRTWVPRGLVKALKLDVKVVTPDAAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINY 68
Query: 64 YLSKF---------------DTKNESAINQWLEWESVELFPSVLSFF--------DNPKV 100
YL K D ++ I +W + +L + + N K
Sbjct: 69 YLVKLSQDDKMKTQLLGADDDLNAQAQIIRWQSLANSDLCIQIANTIVPLKGGAPYNKKS 128
Query: 101 LP---DNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNI 156
+ D + +++ + N +L + ++AD+ + + + I
Sbjct: 129 VDSAMDAVDKIVDIFENRLKNYTYLATENISLADLVAASIFTRYFESLFGTEWRAQHPAI 188
Query: 157 TPWYDRISKLPQVQKALK 174
W++ + P ++ K
Sbjct: 189 VRWFNTVRASPFLKDEYK 206
|
| >2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear protein, RNA-binding protein; HET: MSE; 2.0A {Homo sapiens} Length = 174 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 2e-19
Identities = 32/166 (19%), Positives = 68/166 (40%), Gaps = 20/166 (12%)
Query: 19 AEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLSKF---------D 69
AE S + + L + +PVL+ ++G L +L K
Sbjct: 5 AELSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLMGLTTIAAHLVKQANKEYLLGST 64
Query: 70 TKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAISNS-FLIENSTTV 128
+ ++ + QWLE+ ++ + +++ T L LN + + +L + T+
Sbjct: 65 AEEKAMVQQWLEYRVTQV---------DGHSSKNDIHTLLMDLNSYLEDKVYLTGYNFTL 115
Query: 129 ADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
ADI ++ ++ + D V+ Y N++ W+ I P +++ L
Sbjct: 116 ADILLYYGLHRFIVDLTVQEK-EKYLNVSRWFCHIQHYPGIRQHLS 160
|
| >3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A* Length = 233 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 3e-15
Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 29/159 (18%)
Query: 43 TVPVLELDDGSQLFSANQSCLYL-SKFDTKN-------ESA-INQWLEWESVELFPSVLS 93
TVPVLELDDG+ + Y+ + T E I+ + +EL V
Sbjct: 71 TVPVLELDDGTLIAECTAITEYIDALDGTPTLTGKTPLEKGVIHMMNKRAELELLDPVSV 130
Query: 94 FFDNPKVLP-----------------DNLKTKLNVLNEAISNS-FLIENSTTVADICIWT 135
+F + D ++ + + ++ +S ++ADI +
Sbjct: 131 YFHHATPGLGPEVELYQNKEWGLRQRDKALHGMHYFDTVLRERPYVAGDSFSMADITVIA 190
Query: 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
+ + + WY R+ + P V+K L+
Sbjct: 191 GLIFA--AIVKLQVPEECEALRAWYKRMQQRPSVKKLLE 227
|
| >1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A* Length = 209 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 8e-15
Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 27/156 (17%)
Query: 43 TVPVLELDDGSQLFSANQSCLYL-SKF--------DTKNESAINQWLEWESVELFPSVLS 93
VP L+ D LF + C Y K + + + ++ W+E E+ + ++
Sbjct: 53 QVPALQ-DGDLYLFESRAICKYAARKNKPELLREGNLEEAAMVDVWIEVEANQYTAALNP 111
Query: 94 FFDNPKVLP---------------DNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCV 137
+ P + LK L V ++ +L + ++AD+ +
Sbjct: 112 ILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKCKYLAGDFLSLADLNHVSVT 171
Query: 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173
L + + +L +Y ++ W+ + + P VQK
Sbjct: 172 LCLFA-TPYASVLDAYPHVKAWWSGLMERPSVQKVA 206
|
| >2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A* Length = 221 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 37/193 (19%), Positives = 79/193 (40%), Gaps = 44/193 (22%)
Query: 14 KLLITAEFSTTKLDVELVDVADARLLLSK---------------TVPVLELDDGSQLFSA 58
+ +TA+ L++E + L T+PVL+ D+G+ + +
Sbjct: 17 AVELTAKA--LGLELEQKTIN-----LLTGDHLKPEFVKLNPQHTIPVLD-DNGTIITES 68
Query: 59 NQSCLYL-SKF---------DTKNESAINQWLEWESVELFPSVLSFF---------DNPK 99
+ +YL +K+ D ++ +N L +ES LF + F D P+
Sbjct: 69 HAIMIYLVTKYGKDDSLYPKDPVKQARVNSALHFESGVLFARMRFIFERILFFGKSDIPE 128
Query: 100 VLPDNLKTKLNVLNEAISNSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPW 159
+ ++ +L + + + F+ + T+AD + + ++ + S + I W
Sbjct: 129 DRVEYVQKSYELLEDTLVDDFVAGPTMTIADFSCISTISSIMGVVPLE--QSKHPRIYAW 186
Query: 160 YDRISKLPQVQKA 172
DR+ +LP ++A
Sbjct: 187 IDRLKQLPYYEEA 199
|
| >4g9h_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 2.10A {Yersinia pestis} Length = 211 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 5e-14
Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 26/151 (17%)
Query: 44 VPVLELDDGSQLFSANQS---CLYL-SKF---------DTKNESAINQWLEWESVELFPS 90
VP L LDDGS L + YL K T + +WL + + EL
Sbjct: 55 VPALVLDDGSLLT---EGVAIVQYLADKVPDRHLIAPSGTLSRYHAIEWLNFIATELHKG 111
Query: 91 VLSFF------DNPKVLPDNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSD 143
F + ++ + L + + ++ ++ +L+ +VAD ++T
Sbjct: 112 FSPLFNPNTPDEYKTIVRERLDKQFSYVDSVLAEHDYLLGKKFSVADAYLFTVSRWA--- 168
Query: 144 SKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
+ + + +++ + R+++ P V+ AL
Sbjct: 169 NALNLQIKERSHLDQYMARVAERPAVKAALA 199
|
| >1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 PDB: 1a0f_A* Length = 201 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 5e-14
Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 44 VPVLELDDGSQLFSANQS---CLYL-SKF---------DTKNESAINQWLEWESVELFPS 90
VP L LDDG+ L + YL ++ + +WL + + EL
Sbjct: 52 VPALLLDDGTLLT---EGVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIATELHKG 108
Query: 91 VLSFF------DNPKVLPDNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSD 143
F + + L+ KL +NEA+ + ++ T+AD ++T +
Sbjct: 109 FTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLFTVLRWA--- 165
Query: 144 SKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
V+ L +I + R+++ P+VQ AL
Sbjct: 166 YAVKLNLEGLEHIAAFMQRMAERPEVQDALS 196
|
| >2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia xenovorans} PDB: 2gdr_A* Length = 203 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 26/151 (17%)
Query: 44 VPVLELDDGSQLFSANQS---CLYL------SKF----DTKNESAINQWLEWESVELFPS 90
VP L+LDDG L + Y+ + + + QWL + S EL S
Sbjct: 52 VPCLQLDDGRTLT---EGPAIVQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKS 108
Query: 91 VLSFF------DNPKVLPDNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSD 143
F + + +L T+L + + ++ +L+ + +VADI ++ +
Sbjct: 109 FSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWS--- 165
Query: 144 SKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
+ V LS + ++ + R+ VQ AL+
Sbjct: 166 AYVNIDLSPWPSLQAFQGRVGGREAVQSALR 196
|
| >3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori} Length = 216 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 40/201 (19%), Positives = 83/201 (41%), Gaps = 39/201 (19%)
Query: 14 KLLITAEFSTTKLDVELVDV--------ADARLLLS--KTVPVLELDDGSQLFSANQSCL 63
L+ A + +++ V ++ L L+ VP L+ D+ L+ +
Sbjct: 17 GALLAARA--IGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLD-DNNFVLWESRAIAC 73
Query: 64 YL-SKF---------DTKNESAINQWLEWESVELFPSVLS-----FFDNPKVLPDNLKTK 108
YL K+ D + + +NQ L ++S L+ + + F + +LK
Sbjct: 74 YLADKYGKDDQWYPKDLQKRAVVNQRLYFDSASLYVKIRAICFPILFLGETEIKQSLKDD 133
Query: 109 ----LNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRI 163
L+ LN+ + + ++ + T+AD I+ + +L+ V +SS+ NI W
Sbjct: 134 LNSTLSFLNQFLEKTKWVAADHPTIADTSIYASMSSILA---VGWDISSFPNIQRWIKDC 190
Query: 164 SKLP---QVQKALKTWTEVLK 181
LP + + +T+ + +K
Sbjct: 191 LLLPGAPENEDGARTFGDAVK 211
|
| >1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A* Length = 211 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 32/160 (20%)
Query: 43 TVPVLELDDGSQLFSANQSCLYL-SKFDTKNES-------------AINQWLEWESVELF 88
VP E D +LF + Y+ +++ + + + ++ E +
Sbjct: 53 QVPAFE-DGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFD 111
Query: 89 PSVLSFFDNPKVLP---------------DNLKTKLNVLNEAISNS-FLIENSTTVADIC 132
P L L+V + +L + T+ D+
Sbjct: 112 PVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLH 171
Query: 133 IWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172
+ L + + L + + W I+K P +K
Sbjct: 172 HIPAIQ-YLLGTPTKKLFTERPRVNEWVAEITKRPASEKV 210
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 3e-13
Identities = 103/643 (16%), Positives = 185/643 (28%), Gaps = 202/643 (31%)
Query: 25 KLDVELVDVADA-RLLLSKTVPVLELDDGSQLFSANQSCLYLSKFDT---KNESAINQWL 80
+ + DV D + +LSK E+D A L L F T K E + +++
Sbjct: 30 VDNFDCKDVQDMPKSILSKE----EIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFV 83
Query: 81 EWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAISNSFLIENSTTVADICIWTCVYPL 140
E + L+ L I + T I L
Sbjct: 84 E---------------------EVLRINYKFLMSPIKTEQRQPSMMTRMYI---EQRDRL 119
Query: 141 LSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL------------------KTW--TEVL 180
+D+ + + Y N++ R+ ++++AL KTW +V
Sbjct: 120 YNDN---QVFAKY-NVS----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 181 KGSANDVGSLSEALFSLSIAS-QSGNTVLNSLNKLAPLCKKSNKQQPESKAKPAAVVEDD 239
S + +F L++ + S TVL L KL + + + + +
Sbjct: 172 L-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 240 -------LSSKSK--------DVTSEEIEQTKVAWTQGSPVPLRTRTAPV---------- 274
L SK +V + + A+ + L TR V
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWN---AFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 275 ----------LPQPNENNILI------TSALPY--VNNVPHLGNIIGCVLSADVFSRFCR 316
L ++L+ LP + P +II + D + +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATW-- 344
Query: 317 LVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKY--FAIHRE-------VYE--WFE 365
N +V D+ T E +L L P + + ++ + WF+
Sbjct: 345 ---DNWKHV-NCDKLTTIIE-SSLNV-LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 366 IDFDYFGRTSTPQQTEIVQHLFDR--VHKAGFTSSASVEQLH---CAQCDRFLA--DRFV 418
+ +V L V K S+ S+ ++ + + A V
Sbjct: 399 VIKS------DVM--VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 419 EGVCPKCRYEDARGDQCDGCGQLIN--------AIELIQPRCKQCSQAPTVKSSTQLFLE 470
+ Y + D L K + +FL+
Sbjct: 451 D------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHL-----KNIEHPERMTLFRMVFLD 499
Query: 471 LPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYS 530
+E K++ S W+ + + L+ LK F Y
Sbjct: 500 FRFLEQKIRH----DSTAWN------ASGSILNTLQ------QLK---------FYKPYI 534
Query: 531 LSSSP-------SLVQFLPTATPQ---SKIT-LYQ--FMAKDN 560
+ P +++ FLP SK T L + MA+D
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 58/411 (14%), Positives = 118/411 (28%), Gaps = 114/411 (27%)
Query: 2 KCL------SNRNNVQTL----KLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDD 51
CL N K+L+T T+ ++ D L + T + LD
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLT-----TR-FKQVTDF-----LSAATTTHISLDH 293
Query: 52 GSQLFSANQSCLYLSKF-DTKNESAINQWLEWESVELFPSVLSFF-----DNPKVLPDNL 105
S + ++ L K+ D + + L E + P LS D DN
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQD-----LPREVLTTNPRRLSIIAESIRDGLA-TWDNW 347
Query: 106 KT-KLNVLNEAISNSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRIS 164
K + L I +S + L ++ R + + + P +
Sbjct: 348 KHVNCDKLTTIIESS--LNV----------------LEPAEYRKMFDRLS-VFP-PS--A 385
Query: 165 KLP-QVQKALKTWTEVLKGSANDVGSLSEALFSLSIASQSGNTVLNSLNKLAPLCKKSNK 223
+P + + W +V+K +DV + L S+ + S+ + +
Sbjct: 386 HIPTILLSLI--WFDVIK---SDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKV 437
Query: 224 QQPESKAKPAAVVEDDLSSKSKDVTSEEIEQTKVAWTQGSPVPLRTRTAPVLPQPNENNI 283
+ A ++V+ K+ D +P +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDL------------------------IPPYLDQYF 473
Query: 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRL-VN----RNTLYVSGTDEYGTATETK 338
S + + HL NI + + F + ++ + T + +
Sbjct: 474 Y--SHIGH-----HLKNI----EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 339 ALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQ-----QTEIVQ 384
L++ + Y + YE F T++++
Sbjct: 523 TLQQLKFYK----PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 5e-06
Identities = 58/416 (13%), Positives = 120/416 (28%), Gaps = 108/416 (25%)
Query: 680 HEDFLL--LALINREL-----SAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLF 732
H DF +++ A+ D ++D + IL+ + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-KEEIDHIIM-------- 56
Query: 733 KGSPEQKSRASTVLGILCQ-----VSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSS 787
S + S + L V + +L S I ++
Sbjct: 57 --SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE----------QRQ 104
Query: 788 PSL--VQFLPTGHKIGTPAPLFRK---------------IEQAQVDEWKLKYG----GQQ 826
PS+ ++ ++ +F K + + + + L G G+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 827 --NKESSNNKKEKKQAE-----ITFSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVD 879
+ + K + + + + + E + L+ Q+ + W D
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN------WTSRSD 218
Query: 880 KLLSLKKQLEAMKSQQRAATDANQTSATPSAS-----DNSADVKALEA-EIEKQAEVVRT 933
++K ++ +++++ R + P + N + KA A + +
Sbjct: 219 HSSNIKLRIHSIQAELR-----RLLKSKPYENCLLVLLNVQNAKAWNAFNLS-----CKI 268
Query: 934 LKASAGGDKSVF---AADLAKLLSLKQQLSALTGTTGTTNNTKCNNSSKNSSSHKIGTPA 990
L + K V +A +SL LT + K + ++ T
Sbjct: 269 LLTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 991 PL-------FRKIEQAQVDEWKLKYGGQQNKESSNNKKEKKQAEITFSSVEELEAA 1039
P + A D WK N + K I SS+ LE A
Sbjct: 327 PRRLSIIAESIRDGLATWDNWK-----HVNCD--------KLTTIIESSLNVLEPA 369
|
| >1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating, A putative oxidoreduct; HET: GSH; 2.50A {Proteus mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A* Length = 203 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 3e-13
Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 26/151 (17%)
Query: 44 VPVLELDDGSQLFSANQS---CLYL-SKF---------DTKNESAINQWLEWESVELFPS 90
VPVL+LD+G L + YL +WL + + E+
Sbjct: 52 VPVLQLDNGDILT---EGVAIVQYLADLKPDRNLIAPPKALERYHQIEWLNFLASEVHKG 108
Query: 91 VLSFF------DNPKVLPDNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSD 143
F V+ + LK+K +N+ +S + + TVAD ++T
Sbjct: 109 YSPLFSSDTPESYLPVVKNKLKSKFVYINDVLSKQKCVCGDHFTVADAYLFTLSQWA--- 165
Query: 144 SKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
V L+ +++ + RI++ P V AL
Sbjct: 166 PHVALDLTDLSHLQDYLARIAQRPNVHSALV 196
|
| >3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens} Length = 210 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 5e-13
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 27/153 (17%)
Query: 44 VPVLELDDGSQLFSANQSCLYL---SKF---DTKNESAINQWLEWE--SVELFPSVLSFF 95
+PVLEL+DG+ L+ +N +L S+F + + + + QW +E S E + +V F
Sbjct: 55 IPVLELEDGTCLWESNAILNFLADGSQFLPSEPRLRTQVLQWQFFEQYSHEPYIAVARFI 114
Query: 96 DNPKVLPDNLKTKLN-----------VLNEAISNS-FLIENSTTVADICI--WTCVYPLL 141
+ LP+ + + V+ + +S + +L+ ++ADI + +T V
Sbjct: 115 QLYEGLPEERREEYLKLHKRGYKALDVMEKQLSRTPYLVGEHYSIADIALYAYTHVADEG 174
Query: 142 SDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
LS Y I W R+ P+ L
Sbjct: 175 GFD-----LSRYPGIQAWMQRVQSHPRHVPMLD 202
|
| >1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5 Length = 216 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 6e-13
Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 28/156 (17%)
Query: 44 VPVLELDDGSQLFSANQSCLYL-SKF---------DTKNESAINQWLEWESVELFPSV-- 91
+P L D LF + Y+ SK+ T + + + WLE ES +P+
Sbjct: 54 IPALV-DGDEVLFESRAINRYIASKYASEGTDLLPATASAAKLEVWLEVESHHFYPNASP 112
Query: 92 ----LSFFDNPKVLPD---------NLKTKLNVLNEAISNS-FLIENSTTVADICIWTCV 137
L PD L L+V ++ + +L + T+AD + +
Sbjct: 113 LVFQLLVRPLLGGAPDAAVVDKHAEQLAKVLDVYEAHLARNKYLAGDEFTLADANHASYL 172
Query: 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173
L K L+++ ++ W++ I P QK +
Sbjct: 173 LYLSKTPKAG-LVAARPHVKAWWEAIVARPAFQKTV 207
|
| >1f2e_A Glutathione S-transferase; GST complexed with glutathione, thioredoxin superfamily fold transferase; HET: GSH; 2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1 c.47.1.5 Length = 201 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 6e-13
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 28/152 (18%)
Query: 44 VPVLELDDGSQLFSANQS---CLYL------SKF----DTKNESAINQWLEWESVELFPS 90
VP L LD G L ++ LY+ S + + + L + E +
Sbjct: 52 VPALTLDSGETLT---ENPAILLYIADQNPASGLAPAEGSLDRYRLLSRLSFLGSEFHKA 108
Query: 91 VLSFFDNPKVLPD-------NLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLS 142
+ F P + ++K L L++ ++ N+ +VADI ++ +
Sbjct: 109 FVPLF-APATSDEAKAAAAESVKNHLAALDKELAGRDHYAGNAFSVADIYLYVMLGWP-- 165
Query: 143 DSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
+ V +++Y + + +I++ P V ALK
Sbjct: 166 -AYVGIDMAAYPALGAYAGKIAQRPAVGAALK 196
|
| >3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris} Length = 225 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 28/155 (18%)
Query: 44 VPVLELDDGSQLFSANQSCLYL---SKF---DTKNESAINQWLEWESVELFPS--VLSFF 95
VP+LE G L +N YL + + + QW+ +E L P+ F+
Sbjct: 55 VPLLETAPGRYLAESNAILWYLAVGTSLAPDTRMDRAEALQWMFFEQHALEPNIGSAYFW 114
Query: 96 -----DNPKVLPDNLKTK-------LNVLNEAISNS-FLIENSTTVADICI--WTCVYPL 140
+ L+ L V+ + + + T+ADI + +T V
Sbjct: 115 LCLVKGGRDLQTHALEDWLERGYAALQVMENHLKTNDYFAAGQLTIADIALYGYTHVADQ 174
Query: 141 LSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
LS++ + W R+ + P T
Sbjct: 175 CDFD-----LSTFPAVNAWLRRVEQTPGFITMDWT 204
|
| >1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A* Length = 244 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 29/210 (13%), Positives = 61/210 (29%), Gaps = 52/210 (24%)
Query: 14 KLLITAEFSTTKLDVELVDVADARLLLSK---------------TVPVLELDDGSQLFSA 58
+ I A+ + +EL V L K +P L+ D L +
Sbjct: 16 AVYIFAKK--NGIPLELRTVD-----LVKGQHKSKEFLQINSLGKLPTLK-DGDFILTES 67
Query: 59 NQSCLYL-SKF---------DTKNESAINQWLEWESVELFPSVLSFFDNPKVLP------ 102
+ +YL K+ D + + ++++L W + + + + P
Sbjct: 68 SAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQV 127
Query: 103 ---------DNLKTKLNVLNEAI--SNSFLIENSTTVADICIWTCVYPLLSDSKVRPLLS 151
+ L L + FL T+AD+ + + L
Sbjct: 128 PEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQP--VALGYELFE 185
Query: 152 SYTNITPWYDRISKLPQVQKALKTWTEVLK 181
+ W R+ + + + +L
Sbjct: 186 GRPRLAAWRGRVEAFLGAELCQEAHSIILS 215
|
| >1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5 Length = 210 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 6e-12
Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 38/198 (19%)
Query: 14 KLLITAEFSTTKLDVELVDVA-------DARLLLS--KTVPVLELDDGSQLFSANQSCLY 64
++ A+ + + L DA L+ T+P L D+G ++ + LY
Sbjct: 14 SAILLAKK--LGITLNLKKTNVHDPVERDALTKLNPQHTIPTLV-DNGHVVWESYAIVLY 70
Query: 65 L-SKF---------DTKNESAINQWLEWESVELFPSVLS----FFDNPKVLP---DNLKT 107
L + D K S +NQ L ++ L+ ++ + + LK
Sbjct: 71 LVETYAKDDTLYPKDPKVRSVVNQRLFFDIGTLYKRIIDVIHLVMKKEQPSDEQMEKLKG 130
Query: 108 KLNVLNEAISNS-FLIENSTTVADICI--WTCVYPLLSDSKVRPLLSSYTNITPWYDRI- 163
L++L + ++ + + TVADIC+ L L + +I W +R+
Sbjct: 131 ALDLLEQFVTERAYAAADHLTVADICLLGTVTALNWLKHD-----LEPFPHIRAWLERVR 185
Query: 164 SKLPQVQKALKTWTEVLK 181
+++P ++ K +
Sbjct: 186 AEMPDYEEFSKQVADDTL 203
|
| >3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A* Length = 209 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 41/202 (20%)
Query: 14 KLLITAEFSTTKLDVELVDV--------ADARLLLS--KTVPVLELDDGSQLFSANQSCL 63
+++TA+ +++ + L ++ T+P L D+G L+ + +
Sbjct: 15 SVIMTAKA--VGVELNKKLLNLQAGEHLKPEFLKINPQHTIPTLV-DNGFALWESRAIQV 71
Query: 64 YL-SKF---------DTKNESAINQWLEWESVELFPSVLS-----FFDNPKVLP---DNL 105
YL K+ K + INQ L ++ L+ S + F P +
Sbjct: 72 YLVEKYGKTDSLYPKCPKKRAVINQRLYFDMGTLYQSFANYYYPQVFAKAPADPEAFKKI 131
Query: 106 KTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPL-LSSYTNITPWYDRI 163
+ LN + + +S TVADI + V +V +S Y N+ WY+
Sbjct: 132 EAAFEFLNTFLEGQDYAAGDSLTVADIALVATVSTF----EVAKFEISKYANVNRWYENA 187
Query: 164 SKLP----QVQKALKTWTEVLK 181
K+ + + + +
Sbjct: 188 KKVTPGWEENWAGCLEFKKYFE 209
|
| >3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A* Length = 243 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 33/157 (21%)
Query: 43 TVPVLELDDGSQLFSANQS---CLYL-SKF--------DTKNESAINQWLEWESVELFPS 90
VP D + +S C+YL K+ DT + + Q + +E+ + +
Sbjct: 77 QVPTFT-DGDVVVN---ESTAICMYLEEKYPKVPLFPSDTTIRAKVYQRM-FETSNISTN 131
Query: 91 VLSFFDNPKVLP------------DNLKTKLNVLNEAISNS--FLIENSTTVADICIWTC 136
V+ F D +L + + F+ T+AD+ +
Sbjct: 132 VMEFVQYKMKNKDSIDQVLLKEKKDKAHVELGHWENYLKQTGGFVATKEFTMADVFFFPM 191
Query: 137 VYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173
V + + L SY NI +Y+ + P + K +
Sbjct: 192 VALI--VRQGANLKDSYPNIFKYYNMMMDRPTIVKTM 226
|
| >2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A Length = 247 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 31/168 (18%)
Query: 42 KTVPVLELDDGSQLFSANQSCLYL-SKF---------DTKNESAINQWLEWESVELFPSV 91
K VP L+ D L + LYL K+ D + + ++++L W+ L S
Sbjct: 59 KKVPALK-DGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSC 117
Query: 92 LSFFDNPKVLP----------------DNLKTKLNVLNEAI--SNSFLIENSTTVADICI 133
L + + P L L +L + + +FL ++AD+
Sbjct: 118 LRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVA 177
Query: 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTWTEVLK 181
T + + + W R+ + +LK
Sbjct: 178 ITELMHP--VGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILK 223
|
| >2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 3e-11
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 845 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQT 904
++ L V QGN+VR++K+ +K+E V KLL LKKQL + + A +
Sbjct: 13 QQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKK 72
Query: 905 SATPSA 910
+ PS+
Sbjct: 73 KSGPSS 78
|
| >2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 3e-11
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 1031 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQT 1090
++ L V QGN+VR++K+ +K+E V KLL LKKQL + + A +
Sbjct: 13 QQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKK 72
Query: 1091 SATPSA 1096
+ PS+
Sbjct: 73 KSGPSS 78
|
| >2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 2e-09
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 904 TSATPSASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALT 963
+S + + ++AL E+ KQ +VR LKA DK+ AA++AKLL LK+QL+
Sbjct: 2 SSGSSGTTAKPQQIQALMDEVTKQGNIVRELKAQ-KADKNEVAAEVAKLLDLKKQLAVAE 60
Query: 964 GTTGTTNNTKCNNSSKNS 981
G K S +S
Sbjct: 61 GKPPEAPKGKKKKSGPSS 78
|
| >2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 4e-09
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1090 TSATPSASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALT 1149
+S + + ++AL E+ KQ +VR LKA DK+ AA++AKLL LK+QL+
Sbjct: 2 SSGSSGTTAKPQQIQALMDEVTKQGNIVRELKAQ-KADKNEVAAEVAKLLDLKKQLAVAE 60
Query: 1150 GDTGTTNNTKPNHSSKNS 1167
G K S +S
Sbjct: 61 GKPPEAPKGKKKKSGPSS 78
|
| >1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 Length = 221 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 32/157 (20%)
Query: 43 TVPVLELDDGSQLFSANQS---CLYL-SKF--------DTKNESAINQWLEWESVELFP- 89
TVP L D + S +YL K+ D + Q + + P
Sbjct: 59 TVPALV-DGDVVIN---DSFAIIMYLDEKYPEPPLLPRDLHKRAVNYQAMSIVLSGIQPH 114
Query: 90 ---SVLSFFDNPKVLPDNLK----------TKLNVLNEAISNSFLIENSTTVADICIWTC 136
+V+ + + + + T L L + + +AD+ +
Sbjct: 115 QNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKHATGDEIYLADLFLAPQ 174
Query: 137 VYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173
++ ++ ++ + Y + Y+ ++LP Q AL
Sbjct: 175 IHGAINRFQIN--MEPYPTLAKCYESYNELPAFQNAL 209
|
| >1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5 Length = 218 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 39/186 (20%)
Query: 14 KLLITAEFSTTKLDVELVDV--------ADARLLLS--KTVPVLELDDGSQLFSANQSCL 63
+L+ A+ ++++L + + L+ +P ++ D G L+ +
Sbjct: 16 SVLLLAKM--IGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMD-DHGLVLWESRVILS 72
Query: 64 YL-SKF---------DTKNESAINQWLEWESVELFPSVLSFF--------DNPKVLPDNL 105
YL S + D ++ + ++Q L ++ L+ V+ ++ + L
Sbjct: 73 YLVSAYGKDENLYPKDFRSRAIVDQRLHFDLGTLYQRVVDYYFPTIHLGAHLDQTKKAKL 132
Query: 106 KTKLNVLNEAISNS-FLIENSTTVADICI--WTCVYPLLSDSKVRPLLSSYTNITPWYDR 162
L + + N T+ADI + L Y + W +
Sbjct: 133 AEALGWFEAMLKQYQWSAANHFTIADIALCVTVSQIEAFQFD-----LHPYPRVRAWLLK 187
Query: 163 ISKLPQ 168
+
Sbjct: 188 CKDELE 193
|
| >2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET: GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A* Length = 201 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 5e-11
Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 30/153 (19%)
Query: 44 VPVLELDDGSQLFSANQS---CLYLS-KF---------DTKNESAINQWLEWESVELFPS 90
VP LE+ G+ + Q+ Y+ + + + + L + S +L +
Sbjct: 52 VPALEVKPGTVIT---QNAAILQYIGDHSDVAAFKPAYGSIERARLQEALGFCS-DLHAA 107
Query: 91 VLSFFDNPKVLPD-------NLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCVYPLL 141
F P + + N+ +L L +S N++ + + T D + +
Sbjct: 108 FSGLF-APNLSEEARAGVIANINRRLGQLEAMLSDKNAYWLGDDFTQPDAYASVIIGWGV 166
Query: 142 SDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
LS+Y +R+ P VQKA K
Sbjct: 167 GQKLD---LSAYPKALKLRERVLARPNVQKAFK 196
|
| >3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides} Length = 225 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 33/158 (20%)
Query: 43 TVPVLELDDGSQLFSANQS---CLYLSKF--------DTKNESAINQWLEWE--SVELFP 89
+P LE ++G L +S L++++ ++ + W + +VE
Sbjct: 63 QIPCLE-EEGLILT---ESLAITLHIARTQGGQLGPRSEPEDALMVSWSLFAATAVEPPA 118
Query: 90 SVLSFF---------DNPKVLP---DNLKTKLNVLNEAISNS-FLIENSTTVADICIWTC 136
+ + + + L+ L L + +L+ TVAD+ +
Sbjct: 119 LEIQLIQRSGGGTSPEGQAAIAIAAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAET 178
Query: 137 VYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
+ + LL + + W DR P + ++
Sbjct: 179 LRYGQA---HPALLEPFPAVAAWLDRCQSRPAFRLMME 213
|
| >1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5 Length = 209 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 8e-11
Identities = 33/199 (16%), Positives = 65/199 (32%), Gaps = 37/199 (18%)
Query: 14 KLLITAEFSTTKLDVELVDV--------ADARLLLS--KTVPVLELDDGSQLFSANQSCL 63
+ +TA +++ L L L+ +P L D+G L+ + +
Sbjct: 14 AVQMTAAA--VGVELNLKLTDLMKGEHMKPEFLKLNPQHCIPTLV-DNGFALWESRAIQI 70
Query: 64 YL-SKF---------DTKNESAINQWLEWESVELFPSVLS-----FFDNPKVLP---DNL 105
YL K+ D + + +NQ L ++ L+ F P +
Sbjct: 71 YLAEKYGKDDKLYPKDPQKRAVVNQRLYFDMGTLYQRFADYHYPQIFAKQPANPENEKKM 130
Query: 106 KTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPL-LSSYTNITPWYDRI 163
K + LN + + N T+AD+ + + +V + Y N+ W+ R
Sbjct: 131 KDAVGFLNTFLEGQEYAAGNDLTIADLSLAATIATY----EVAGFDFAPYPNVAAWFARC 186
Query: 164 SKLPQVQKALKTWTEVLKG 182
+ + K
Sbjct: 187 KANAPGYALNQAGADEFKA 205
|
| >3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A {Methylococcus capsulatus} PDB: 3uap_A* Length = 227 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 9e-11
Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 27/152 (17%)
Query: 44 VPVLELDDGSQLFSANQS---CLYLS----------KFDTKNESAINQWLEWESVELFPS 90
VP L+LDDG L + YL+ T + +WL + S E+ +
Sbjct: 54 VPALQLDDGQVLT---EDQVILQYLADLKPESGLMPPSGTFERYRLLEWLAFISTEIHKT 110
Query: 91 VLSFF------DNPKVLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCVYPLLS 142
F+ + ++ L +L+ + + + +L+ + +VAD + T +
Sbjct: 111 FGPFWNPESPEASKQIALGLLSRRLDYVEDRLEAGGPWLMGDRYSVADAYLSTVLGWC-- 168
Query: 143 DSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
++ LS + I + +R P VQ A+K
Sbjct: 169 -EYLKIDLSKWPRILAYLERNQARPAVQAAMK 199
|
| >2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A Length = 209 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-10
Identities = 28/180 (15%), Positives = 65/180 (36%), Gaps = 17/180 (9%)
Query: 4 LSNRNNVQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCL 63
++ + + LI A ++ + +L+ K P +LDD ++ +
Sbjct: 25 INGKAPIVAYAELIAARI----VNALAPNSIAIKLVDDKKAPAAKLDDATEDVFNKITSK 80
Query: 64 YLSKFDTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLI 122
+ + FD ++ + +W+ EL +F L L L+ ++ +F++
Sbjct: 81 FAAIFDNGDKEQVAKWVNLAQKELVIK--NFAK--------LSQSLETLDSQLNLRTFIL 130
Query: 123 ENST-TVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTWTEVLK 181
+ AD+ W + + N++ WY + P +A ++ L
Sbjct: 131 GGLKYSAADVACWGALRSNGMCGSIIKN-KVDVNVSRWYTLLEMDPIFGEAHDFLSKSLL 189
|
| >3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A* Length = 219 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 32/167 (19%)
Query: 43 TVPVLELDDGSQLFSANQSCLYL-SKF--------------DTKNESAINQWLEWESVEL 87
+P L +DG L+ + +YL K+ D + + ++Q L ++ L
Sbjct: 51 CIPTLVDEDGFVLWESRAIQIYLVEKYGAHDADLAERLYPSDPRRRAVVHQRLFFDVAVL 110
Query: 88 FPSVLSFFD---NPKVLPDNLKTKLNVLNEAIS--NSFLIE-------NSTTVADICIWT 135
+ ++ + +P +L + +A+ N+FL + T+AD+ I
Sbjct: 111 YQRFAEYYYPQIAGQKVPVGDPGRLRSMEQALEFLNTFLEGEQYVAGGDDPTIADLSIL- 169
Query: 136 CVYPLLSDSKVRPL-LSSYTNITPWYDRISKLPQVQKALKTWTEVLK 181
++ +V L Y N+ WY+R S + +V
Sbjct: 170 ---ATIATYEVAGYDLRRYENVQRWYERTSAIVPGADKNVEGAKVFG 213
|
| >2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa} Length = 207 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 35/159 (22%)
Query: 44 VPVLELDDGSQLFSANQS---CLYL-SKFDTKN----------ESAINQWLEWESVELFP 89
VP L++ D L Q+ Y+ + + IN+W+ + + ++ P
Sbjct: 51 VPALQVGDWV-LT---QNAAILNYITDIAPAERGLSGDGSLKARAEINRWIAFSNSDVHP 106
Query: 90 SV------LSFFDNPKVLPD-------NLKTKLNVLNEAISNS-FLIENSTTVADICIWT 135
++ +P+++ L+ + + + +L + AD ++
Sbjct: 107 MYWALFGGTAYLQDPQMIARSQDNARQKLRVLYQRADAHLKHHNWLANGQRSGADAYLYV 166
Query: 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
+ KV LSS ++ +++R+ P VQ AL+
Sbjct: 167 TLRWA---KKVGVDLSSLDALSAFFERMEADPGVQAALQ 202
|
| >1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3 Length = 57 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-09
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 847 VEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQ 895
L VA QG++VR++K+ K + V +LLSLK + + Q+
Sbjct: 2 SLVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQE 50
|
| >1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3 Length = 57 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-09
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 1033 VEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQ 1081
L VA QG++VR++K+ K + V +LLSLK + + Q+
Sbjct: 2 SLVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQE 50
|
| >1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3 Length = 57 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-07
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 916 DVKALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTG 964
D L + Q +VVR LKA K A + +LLSLK + TG
Sbjct: 1 DSLVLYNRVAVQGDVVRELKAK-KAPKEDVDAAVKQLLSLKAEYKEKTG 48
|
| >1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3 Length = 57 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-07
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1102 DVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
D L + Q +VVR LKA K A + +LLSLK + TG
Sbjct: 1 DSLVLYNRVAVQGDVVRELKAK-KAPKEDVDAAVKQLLSLKAEYKEKTG 48
|
| >2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A Length = 230 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 31/154 (20%)
Query: 43 TVPVLELDDGSQLFSANQS---CLYLS-KF------DTKNESAINQWLEWESVELFPSVL 92
+P E LF +S ++++ D + W+ + PS+L
Sbjct: 72 QIPSYE-QGDLILF---ESGAIVMHIAQHHSGLLPEDQLRRARTVAWMFAALNTIEPSIL 127
Query: 93 SFFDNPKVLPD-------------NLKTKLNVLNEAISNSFLIENSTTVADICIWTCVYP 139
+F + L +L+ L+ + + +E S + ADI + +
Sbjct: 128 NFTTVWLFERNEPWHEARLARTKEQLLKRLDELSAWLGDREWLEGSFSAADILMICVLRR 187
Query: 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173
L S +L Y N+ + +R P ++A
Sbjct: 188 LES----SGILKDYGNLLAYVERGKARPAFKRAF 217
|
| >2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ... Length = 210 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 18/147 (12%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF-----DTKNESAINQWLEWESVELFPSVLSFFDNP 98
+P + D L+ +N +L + + E+A+ + +L +S
Sbjct: 53 LPKFQ-DGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRCKYISLIYTN 111
Query: 99 ---------KVLPDNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRP 148
K LP LK +L++ F++ + + AD + + +
Sbjct: 112 YEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLLLIHEVLAP--G 169
Query: 149 LLSSYTNITPWYDRISKLPQVQKALKT 175
L ++ ++ + R+S P+++ L +
Sbjct: 170 CLDAFPLLSAYVGRLSARPKLKAFLAS 196
|
| >3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A Length = 218 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 7e-09
Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 48/189 (25%)
Query: 25 KLDVELVDVA----DARLLLS--KTVPVLELDDGSQLFSANQSCLYLSKFDTK------N 72
+ VEL + + K VP+L+ DD L + Y+ D K
Sbjct: 26 NIPVELNVLQNDDEATPTRMIGQKMVPILQKDDSRYLPESMDIVHYVDNLDGKPLLTGKR 85
Query: 73 ESAINQWLEW------------------------ESVELF--------PSVLSFFDNPKV 100
AI +WL + + F S + +
Sbjct: 86 NPAIEEWLRKVNGYVNQLLLPRFAKSAFDEFSTPAARQYFIRKKEASSGSFDNHLAHSAG 145
Query: 101 LPDNLKTKLNVLNEAISNSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWY 160
L + L +L++ I + + DI ++ PLL + + + T + +
Sbjct: 146 LIKKIGDDLRLLDKLIVQPNAVNGELSEDDIHLF----PLLRNLTLVAGIHWPTKVADYR 201
Query: 161 DRISKLPQV 169
D ++K Q+
Sbjct: 202 DNMAKQTQI 210
|
| >1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A Length = 59 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-08
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 850 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQ 894
+ +A QG +VR++K+ K++ V+ LLSLK + + +
Sbjct: 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTGK 46
|
| >1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A Length = 59 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-08
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQ 1080
+ +A QG +VR++K+ K++ V+ LLSLK + + +
Sbjct: 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTGK 46
|
| >1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A Length = 59 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 1e-06
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 920 LEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGT 965
+ +I Q EVVR LKA K+ + LLSLK + TG
Sbjct: 2 VYDKIAAQGEVVRKLKAE-KAPKAKVTEAVECLLSLKAEYKEKTGK 46
|
| >1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A Length = 59 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-06
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
+ +I Q EVVR LKA K+ + LLSLK + TG
Sbjct: 2 VYDKIAAQGEVVRKLKAE-KAPKAKVTEAVECLLSLKAEYKEKTG 45
|
| >4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239} Length = 238 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 29/164 (17%)
Query: 44 VPVLELDDGSQLF-------------SANQSCLYLSKFDTKNESAINQWLEWESVELFPS 90
VP L D G+ + Y K D K N+ L +++ +
Sbjct: 54 VPTLVDDKGTPITESNNILLYIADTYDKEHKFFYSLKQDPKLYWEQNELLFYQATQFQSQ 113
Query: 91 --VLSFFD--NPKVLP-------DNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVY 138
++ + N + + + + +S + + + T+ DI +
Sbjct: 114 TLTIANANYQNGHIDENIAQYVLSSFEKVFAFMETKLSGRDWFVGDKFTIVDIAFLVGEH 173
Query: 139 PL----LSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTWTE 178
+ L ++ N+ W+ R V++ LK
Sbjct: 174 RRRERLHNSPIWIDLKENFPNVEKWFQRAIAFENVEEILKEHAA 217
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 3e-08
Identities = 59/399 (14%), Positives = 128/399 (32%), Gaps = 80/399 (20%)
Query: 436 DGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNAR 494
G +++ + ++A Q F++ E K ++ + + R
Sbjct: 434 KGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRR 493
Query: 495 VICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSP------SLVQFLPTATPQS 548
+A + D L + R + G P+P SLS S ++ + + +
Sbjct: 494 AQFEAII-DWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEG 552
Query: 549 KITLYQ---------------FMAKDNVPFHSIM---------------FPATLVAAG-D 577
K+ + + + + + +P +G D
Sbjct: 553 KLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKD 612
Query: 578 Q------YTKVNH------------IMATEYLNYEDGKFSKSRGTGVFGNNAKDT-GLPA 618
+ NH I + E K SKS+G + +A + G A
Sbjct: 613 LIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENG--A 670
Query: 619 DIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISP 678
D+ R Y++ + + D + +++ +L + F +S + E+
Sbjct: 671 DVVRLYIMSLAEHDSDFDWRRKEVG-----KLRKQIERFYE-LISQFAEYEVKGNVELKD 724
Query: 679 IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILN-ISRYCNQYMQTQQPWVLFKGSPE 737
I D +L +N+ + + L++ + R +++ I Y++ +
Sbjct: 725 I--DRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLR--------RTEGR 774
Query: 738 QKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLG 776
VL L V L++P+ P + +LG
Sbjct: 775 DDEAKRYVLRTLADV---WVRLMAPFTPHICEELWEKLG 810
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKA---LE 341
IT A PY++ H+G+ + DV +RF R+ N L+ G+ A
Sbjct: 38 ITVAFPYLSGHLHVGHARTYTI-PDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN 96
Query: 342 EGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHL 386
I + + E+ FE D + E
Sbjct: 97 RDPKTIWIYRDVYKVPEEILWTFE-DPINIVKYFMKAAKETFIRA 140
|
| >3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A* Length = 235 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 38/168 (22%)
Query: 41 SKTVPVLELDDGSQLFSAN-------QS---CLYL-SKF------------DTKNESAIN 77
+ TVP+L + + + S + QS YL + + +
Sbjct: 58 TNTVPLLVVSNINNTVSPSSASFSIGQSLAALEYLEEALPTNARPLLPPISNPVARAHVR 117
Query: 78 QWLEWESVELFP----SVLSFFDNPKVLP-----DNLKTKLNVLNEAISNS---FLIENS 125
+ ++ P + P D + + + S F + +
Sbjct: 118 TICNIIACDVQPVTNLKIQKKVKALDGDPTVWSRDLATQGFGAVEKLLELSAGRFCVGDE 177
Query: 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173
T+AD+C+ V+ + L+ + ++ + K VQKA
Sbjct: 178 ITLADVCLVPAVW-AAERVGMD--LARFPITKRVFEEMLKEEAVQKAH 222
|
| >1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5 Length = 254 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 15/144 (10%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSK-----FDTKNESAINQWLEWESVELFPSVLSFFDNP 98
+P D +L + Y++ E A LE +++ V +
Sbjct: 55 LPYYI-DGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSK 113
Query: 99 ------KVLPDNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLS 151
L L + + + + +L + T D ++ + +L L
Sbjct: 114 DFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDP--MCLD 171
Query: 152 SYTNITPWYDRISKLPQVQKALKT 175
++ + + RI +PQ+ K LK+
Sbjct: 172 AFPKLVCFKKRIEAIPQIDKYLKS 195
|
| >1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 1e-06
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 845 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQR 896
+ LE V QG VR +K + V KLL LK QL +S+Q+
Sbjct: 9 AERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQK 60
|
| >1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 1e-06
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 1031 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQR 1082
+ LE V QG VR +K + V KLL LK QL +S+Q+
Sbjct: 9 AERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQK 60
|
| >1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-05
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 1095 SASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
S S A+ ALE ++ Q E VR LK + ++AKLL LK QL
Sbjct: 3 SGSSGMAERAALEELVKLQGERVRGLKQQ-KASAELIEEEVAKLLKLKAQLGPDES 57
|
| >1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-05
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 909 SASDNSADVKALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTG 964
S S A+ ALE ++ Q E VR LK + ++AKLL LK QL
Sbjct: 3 SGSSGMAERAALEELVKLQGERVRGLKQQ-KASAELIEEEVAKLLKLKAQLGPDES 57
|
| >2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1* Length = 198 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 21/148 (14%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF------DTKNESAINQWLEWESVELFPSVLSFFDN 97
+P+LE DG L + YL+K + ++ ++ +
Sbjct: 50 IPILE-VDGLTLHQSLAIARYLTKNTDLAGNTEMEQCHVDAIVD-TLDDFMSCFPWAEKK 107
Query: 98 P--------KVLPDNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRP 148
++L N + L+ + +LI S T AD C LL +P
Sbjct: 108 QDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGMSVTWADFYWEICSTTLL---VFKP 164
Query: 149 -LLSSYTNITPWYDRISKLPQVQKALKT 175
LL ++ + ++ +P V +K
Sbjct: 165 DLLDNHPRLVTLRKKVQAIPAVANWIKR 192
|
| >1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A* Length = 219 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 23/171 (13%), Positives = 56/171 (32%), Gaps = 15/171 (8%)
Query: 17 ITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLSKF-----DTK 71
A + + + + L +P L D +L +N Y+++ +T+
Sbjct: 32 YKAGPAPDFDPSDWTNEKEKLGLDFPNLPYLI-DGDVKLTQSNAILRYIARKHNMCGETE 90
Query: 72 NESAINQWLEWESVELFPSVLSFFDNP------KVLPDNLKTKLNVLNEAISNS-FLIEN 124
E LE ++L + +P + L KL L+ + + + + +
Sbjct: 91 VEKQRVDVLENHLMDLRMAFARLCYSPDFEKLKPAYLEQLPGKLRQLSRFLGSRSWFVGD 150
Query: 125 STTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
T D + + N++ + R L ++ +++
Sbjct: 151 KLTFVDFLAYDVLDQQRMFVP--DCPELQGNLSQFLQRFEALEKISAYMRS 199
|
| >2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A* Length = 223 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 35/157 (22%)
Query: 42 KTVPVLELDDGSQLFSANQS---CLYL-SKF--------DTKNESAINQWLEWESVELFP 89
K VP L+ DG + QS YL D + + + + + + P
Sbjct: 64 KQVPALK-IDGITIV---QSLAIMEYLEETRPIPRLLPQDPQKRAIVRMISDLIASGIQP 119
Query: 90 ----SVLSFFDNPKVLPDNLK------TKLNVLNEAISNSFLIENSTTVADICIWTCVYP 139
SVL + K L + ++ + + + + ++AD+C+ V
Sbjct: 120 LQNLSVLKQVGQENQMQWAQKVITSGFNALEKILQSTAGKYCVGDEVSMADVCLVPQVAN 179
Query: 140 LLS---DSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173
D LS Y I+ + L Q +
Sbjct: 180 AERFKVD------LSPYPTISHINKELLALEVFQVSH 210
|
| >1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A* Length = 234 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 23/148 (15%)
Query: 44 VPVLELDDGSQLFSANQS---CLYLSK-----FDTKNESAINQWLEWESVELFPSVLSFF 95
+P D +L QS Y++ E A LE +++ V
Sbjct: 54 LPYYI-DGDVKLT---QSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIA 109
Query: 96 DNP------KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRP 148
+ L L + + + ++L + T D ++ + +L + P
Sbjct: 110 YSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVL---YMDP 166
Query: 149 -LLSSYTNITPWYDRISKLPQVQKALKT 175
L ++ + + RI +PQ+ K LK+
Sbjct: 167 MCLDAFPKLVCFKKRIEAIPQIDKYLKS 194
|
| >3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli} Length = 288 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 26/142 (18%)
Query: 63 LYLS----KF---DTKNESAINQWLEWESVELFPSV--LSFFD--NPKVLP-------DN 104
LYL+ F D + WL W F P +
Sbjct: 123 LYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFTME 182
Query: 105 LKTKLNVLNEAISNS-FLIENSTTVADICIW----TCVYPLLSDSKVRPLLSSYTNITPW 159
K L+VL++ ++ F+ + T+AD+ IW V + D+ SY ++ W
Sbjct: 183 AKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGVYDAAEFLDAGSYKHVQRW 242
Query: 160 YDRISKLPQVQKAL---KTWTE 178
+ + P V++ +T
Sbjct: 243 AKEVGERPAVKRGRIVNRTNGP 264
|
| >1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 Length = 280 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 25/149 (16%)
Query: 44 VPVLELDDGSQLFSANQS---CLYLSK------FDTKNESAINQWLEWESVELFPSVLSF 94
+P D +L QS Y++ K + I+ +++ V
Sbjct: 54 LPYYI-DGDVKLT---QSMAIIRYIADKHNMLGGCPKERAEISMLEG-AVLDIRYGVSRI 108
Query: 95 FDNP------KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVR 147
+ L L + + + ++L + T D ++ + +L +
Sbjct: 109 AYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVL---YMD 165
Query: 148 P-LLSSYTNITPWYDRISKLPQVQKALKT 175
P L ++ + + RI +PQ+ K LK+
Sbjct: 166 PMCLDAFPKLVCFKKRIEAIPQIDKYLKS 194
|
| >2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus} Length = 225 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 31/154 (20%)
Query: 44 VPVLELDDGSQLFSANQS---CLYLSK------FDTKNESAINQWLEWESVELFPSVLSF 94
VP+L G+ L +S L L + E+ I + ELF ++ +
Sbjct: 75 VPMLN-VSGNVLG---ESHAIELLLGGRFGLLGTNDWEEAKIMAVVLN-IDELFQKLIPW 129
Query: 95 FDNP---------KVLPDN-LKTKLNVLNEAISNS---FLIENSTTVADICIWTCVYPLL 141
+ L ++ + L + + S ++ N +VAD+ ++ + L
Sbjct: 130 THEKNTTKKAELFRNLSESDVMPFLGRYEKFLKESTTGHIVGNKVSVADLTVFNMLMTLD 189
Query: 142 SDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
+ L Y + + ++I ++P +++ +K
Sbjct: 190 DEV----KLEEYPQLASFVNKIGQMPGIKEWIKK 219
|
| >1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A* Length = 208 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 18/150 (12%), Positives = 50/150 (33%), Gaps = 23/150 (15%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSK------FDTKNESAINQWLEWESVELFPSVLSFFDN 97
+P L D Q+ + +L++ + + I+ + E +L
Sbjct: 50 LPCLY-DGDQQIVQSGAILRHLARKYNLNGENEMETTYIDMFCE-GVRDLHVKYTRMIYM 107
Query: 98 P----------KVLPDNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKV 146
+LP L +L + ++ + + AD ++ + +
Sbjct: 108 AYETEKDPYIKSILPGELAKFEKLLATRGNGRNLILGDKISYADYALFEELDVHQ---IL 164
Query: 147 RP-LLSSYTNITPWYDRISKLPQVQKALKT 175
P L + + ++ R+ P++++ +
Sbjct: 165 DPHCLDKFPLLKVFHQRMKDRPKLKEYCEK 194
|
| >1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans} Length = 207 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 27/154 (17%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF------DTKNESAINQWLEWESVELFPSVLSFFDN 97
+P LE DG +L ++ +L++ E+ +N + + + +F
Sbjct: 53 LPFLE-VDGKKLAQSHAIARFLAREFKLNGKTAWEEAQVNSLAD-QYKDYSSEARPYFYA 110
Query: 98 P-------------KVLPDNLKTKLNVLNEAISNS---FLIENSTTVADICIWTCVYPLL 141
+ + L + S FL+ +S T D+ I L+
Sbjct: 111 VMGFGPGDVETLKKDIFLPAFEKFYGFLVNFLKASGSGFLVGDSLTWIDLAIAQHSADLI 170
Query: 142 SDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
+ S + + ++I +PQ++K ++T
Sbjct: 171 AKG---GDFSKFPELKAHAEKIQAIPQIKKWIET 201
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 59/400 (14%), Positives = 120/400 (30%), Gaps = 84/400 (21%)
Query: 437 GCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIED-KLQSWVSETSDQWSSNARV 495
G +++ + ++A Q F++ E + E R
Sbjct: 435 GIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRA 494
Query: 496 ICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSP------SLVQFLPTATPQSK 549
+A + D L + R + G P+P SLS S ++ + + + K
Sbjct: 495 QFEAII-DWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGK 553
Query: 550 ITLYQ---------------FMAKDNVPFHSIMFPATLVAAG---------DQYT----- 580
+ + + + + + + D
Sbjct: 554 LDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDL 613
Query: 581 KVNH----------IMATEY----------LNYEDGKFSKSRGTGV-FGNNAKDTGLPAD 619
NH I E+ E K SKS+G + F + ++ G AD
Sbjct: 614 IPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENG--AD 671
Query: 620 IFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINR---ALSFIEKNYGSTIPEI 676
+ R Y++ + + D + + + L I R +S + E+
Sbjct: 672 VVRLYIMSLAEHDSDFDWRR---------KEVGKLRKQIERFYELISQFAEYEVKGNVEL 722
Query: 677 SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSP 736
I D +L +N+ + + L++ + R +++ + W L +
Sbjct: 723 KDI--DRWMLHRLNKAIKETTNALEEFRTRTAVQWAFY-------SIMNDLRWYLRRTEG 773
Query: 737 EQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLG 776
VL L V L++P+ P + +LG
Sbjct: 774 RDDEAKRYVLRTLADV---WVRLMAPFTPHICEELWEKLG 810
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 7e-04
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 13/109 (11%)
Query: 285 ITSALPYVNNVPHLG----NIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKA- 339
IT A PY++ H+G I DV +RF R+ N L+ G+ A
Sbjct: 38 ITVAFPYLSGHLHVGHARTYTIP-----DVIARFKRMQGYNVLFPMAWHITGSPIVGIAE 92
Query: 340 --LEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHL 386
I + + E+ FE D + E
Sbjct: 93 RIKNRDPKTIWIYRDVYKVPEEILWTFE-DPINIVKYFMKAAKETFIRA 140
|
| >3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis} Length = 218 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 21/147 (14%)
Query: 44 VPVLELDDGSQLFSANQS---CLYLSKF-----DTKNESAINQWLEWESVELFPSVLSFF 95
+P + D L QS Y++ +T E A +E V+L V
Sbjct: 55 LPYYK-DGNFSLT---QSLAILRYIADKHNMIGNTPVERAKISMIEGGLVDLRAGVSRIA 110
Query: 96 DNP------KVLPDNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRP 148
L + L + ++ + N+ +L ++ T D + + +
Sbjct: 111 YQETFEQLKVPYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYEALDVIRYLDP--T 168
Query: 149 LLSSYTNITPWYDRISKLPQVQKALKT 175
+ ++ N+ + RI LP ++ +++
Sbjct: 169 SVEAFPNLMQFIHRIEALPNIKAFMES 195
|
| >2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus} Length = 206 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 26/154 (16%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF------DTKNESAINQWLEWESVELFPSVLSFF-- 95
+PVLE +DG QL + YLS+ E+ ++ + + + + +
Sbjct: 51 IPVLE-EDGKQLAQSFAIARYLSRKFGFAGKTPFEEALVDSVAD-QYKDYINEIRPYLRV 108
Query: 96 -----------DNPKVLPDNLKTKLNVLNEAISNS---FLIENSTTVADICIWTCVYPLL 141
++L + + + + S +L+ +S T AD+C+ +
Sbjct: 109 VAGVDQGDPEKLFKELLLPAREKFFGFMKKFLEKSKSGYLVGDSVTYADLCLAEHTSGIA 168
Query: 142 SDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
+ + + I +++ +P ++K ++T
Sbjct: 169 AKFP--SIYDGFPEIKAHAEKVRSIPALKKWIET 200
|
| >2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus} Length = 204 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 23/154 (14%), Positives = 56/154 (36%), Gaps = 28/154 (18%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF------DTKNESAINQWLEWESVELFPSVLSFFD- 96
+PVLE DG QL + YL++ E+ ++ + + + V +F
Sbjct: 51 LPVLE-VDGKQLPQSVAIVRYLARKFGYAGKSAWEEAVVDSIAD-QFKDFLNEVRPYFKV 108
Query: 97 ------------NPKVLPDNLKTKLNVLNEAISNS---FLIENSTTVADICIWTCVYPLL 141
V + ++ + + + +L+ +S T AD+ + +
Sbjct: 109 LLGMDQGDLKALEKDVFEPARQKFFTIVTKILKENKTGYLVGDSLTFADLYVAEMGFTEH 168
Query: 142 SDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
L + + +++ P+++K ++T
Sbjct: 169 YPK----LYDGFPEVKAHAEKVRSNPKLKKWIET 198
|
| >2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP: a.45.1.1 c.47.1.5 Length = 248 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 19/156 (12%), Positives = 40/156 (25%), Gaps = 27/156 (17%)
Query: 44 VPVLELDDGSQLFSANQS---CLYLSKF------DTKNESAINQWLEWESVELFPSVLSF 94
PVL + + S Q +YL + + + + + + L L+
Sbjct: 71 PPVLIDRERNFAIS--QMPAIAIYLGERLDILPATVEGRTLSAKIVNDANDVLDELTLNG 128
Query: 95 FDNP----------KVLPDNLK--TKLNVLNEAISNS-FLI-ENSTTVADICIWTCV-YP 139
L ++ N + S F++ VADI
Sbjct: 129 GREMWTPEKWQEFVPRLQKWIRIFADTGARNGLSAASGFMLGTEKIGVADIVTAILWTTV 188
Query: 140 LLSDSKVRP-LLSSYTNITPWYDRISKLPQVQKALK 174
++ + + I R+ +
Sbjct: 189 ADRFPAIKGIIEDTSPIIWGLSRRVVATAPLAALNS 224
|
| >1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ... Length = 221 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 24/151 (15%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF-----DTKNESAINQWLEWESVELFPSVLSFFDNP 98
VP++E DG +L Y++ E A+ +L +L P
Sbjct: 54 VPMVE-IDGMKLVQTRAILNYIASKYNLYGKDIKERALIDMYIEGIADLGEMILLLPVCP 112
Query: 99 -------------KVLPDNLKTKLNVLNEAISNSFLIENSTTVADICIWTCVYPLLSDSK 145
K+ + ++ +L+ N + ADI + +Y + +
Sbjct: 113 PEEKDAKLALIKEKIKNRYFP-AFEKVLKSHGQDYLVGNKLSRADIHLVELLYYVE---E 168
Query: 146 VRP-LLSSYTNITPWYDRISKLPQVQKALKT 175
+ L+SS+ + RIS LP V+K L+
Sbjct: 169 LDSSLISSFPLLKALKTRISNLPTVKKFLQP 199
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Length = 693 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 845 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATD 900
+ L AV QG+LVR++K + + V +L + K+ LEA + + D
Sbjct: 8 EVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDD 63
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Length = 693 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 1031 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATD 1086
+ L AV QG+LVR++K + + V +L + K+ LEA + + D
Sbjct: 8 EVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDD 63
|
| >3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A* Length = 229 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 37/182 (20%)
Query: 25 KLDVELVDVADAR--LLLS----KTVPVLELDDGSQLFSANQS---CLYL-SKF------ 68
L E V + L VPVLE + G L ++ Y+
Sbjct: 25 GLTFEEVTFYGGQAPQALEVSPRGKVPVLETEHGF-LS---ETSVILDYIEQTQGGKALL 80
Query: 69 --DTKNESAINQWLEWESVELFPSVLSFF--------DNPKVL---PDNLKTKLNVLNEA 115
D ++ + + L+ + + + + P + +L L
Sbjct: 81 PADPFGQAKVRELLKEIELYIELPARTCYAESFFGMSVEPLIKEKARADLLAGFATLKRN 140
Query: 116 ISNS-FLIENSTTVADICIWTCVYPLLSDSKVRP---LLSSYTNITPWYDRISKLPQVQK 171
+ ++ T+AD+ V + K L+ + + + P + +
Sbjct: 141 GRFAPYVAGEQLTLADLMFCFSVDLANAVGKKVLNIDFLADFPQAKALLQLMGENPHMPR 200
Query: 172 AL 173
L
Sbjct: 201 IL 202
|
| >2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A* Length = 202 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 21/150 (14%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF-----DTKNESAINQWLEWESVELFPSVLSFFDNP 98
+PVL+ DG+++ + +L++ T E + ++F V+ P
Sbjct: 50 MPVLD-IDGTKMSQSMCIARHLAREFGLDGKTSLEKYRVDEITETLQDIFNDVVKIKFAP 108
Query: 99 --------KVLPDNLKTKLNVLNEAIS-----NSFLIENSTTVADICIWTCVYPLLSDSK 145
+ + K L + + F + NS T+AD+ + + L +
Sbjct: 109 EAAKEAVQQNYEKSCKRLAPFLEGLLVSNGGGDGFFVGNSMTLADLHCYVALEVPLKHTP 168
Query: 146 VRPLLSSYTNITPWYDRISKLPQVQKALKT 175
LL I R+++ P++ LK
Sbjct: 169 --ELLKDCPKIVALRKRVAECPKIAAYLKK 196
|
| >2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A* Length = 216 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 17/145 (11%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF------DTKNESAINQWLEWESVELFPSVLSFFDN 97
+P DD +L + Y++ ++ + ++ +V+L +
Sbjct: 54 LPYYI-DDKCKLTQSLAILRYIADKHGMIGTTSEERARVSMIEGA-AVDLRQGISRISYQ 111
Query: 98 PK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLL 150
PK +L T + + ++ + N +L S + D ++ + + L
Sbjct: 112 PKFEQLKEGYLKDLPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEALDAIRYLEP--HCL 169
Query: 151 SSYTNITPWYDRISKLPQVQKALKT 175
+ N+ + RI LP ++ +++
Sbjct: 170 DHFPNLQQFMSRIEALPSIKAYMES 194
|
| >3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A* Length = 222 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 9e-05
Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 22/150 (14%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF------DTKNESAINQWLEWESVELFPSVLSFFDN 97
VP++E DG +L Y++ + K + I+ ++E L ++ F
Sbjct: 55 VPMVE-IDGMKLVQTRSILHYIADKHNLFGKNLKERTLIDMYVEGTLDLLELLIMHPFLK 113
Query: 98 P------------KVLPDNLKTKLNVLNEAISNSFLIENSTTVADICIWTCVYPLLSDSK 145
P K + + SFL+ N ++AD+ + + L
Sbjct: 114 PDDQQKEVVNMAQKAIIRYFP-VFEKILRGHGQSFLVGNQLSLADVILLQTILALEEKIP 172
Query: 146 VRPLLSSYTNITPWYDRISKLPQVQKALKT 175
+LS++ + + ++S +P +++ L+
Sbjct: 173 --NILSAFPFLQEYTVKLSNIPTIKRFLEP 200
|
| >3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50} Length = 252 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 29/160 (18%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF------DTKNESAINQWLE------WESVELFPSV 91
P L DG + L+L D +NQ E+ ++ V
Sbjct: 74 PPYLV-ADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPV 132
Query: 92 LSFFDNPK-----------VLPDNLKTKLNVLNEAISNS---FLIENSTTVADICIWTCV 137
+ + + +A+ + AD+ ++ V
Sbjct: 133 AAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVV 192
Query: 138 YPLLS--DSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
LL ++R L+ Y + + R+++LP+++ L +
Sbjct: 193 EGLLHAFPRRMRTLVHRYPRLMALHARVAELPELRGYLAS 232
|
| >1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A Length = 221 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 28/153 (18%)
Query: 44 VPVLELDDGSQLFSANQS---CLYLSKF-----DTKNESAINQWLEWESVELFPSVLSFF 95
VP++E DG L Q+ YL+ E + +L +
Sbjct: 54 VPLVE-IDGMMLT---QTRAILSYLAAKYNLYGKDLKERVRIDMYADGTQDLMMMIAVAP 109
Query: 96 DNP---------KVLPDNLKTKLNVLNEAISNS---FLIENSTTVADICIWTCVYPLLSD 143
+L V + + + FL+ N + ADI + + +
Sbjct: 110 FKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLSWADIQLLEAILMVE-- 167
Query: 144 SKVRP-LLSSYTNITPWYDRISKLPQVQKALKT 175
++ +LS + + + RIS +P ++K L+
Sbjct: 168 -ELSAPVLSDFPLLQAFKTRISNIPTIKKFLQP 199
|
| >2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ... Length = 218 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 19/146 (13%), Positives = 52/146 (35%), Gaps = 19/146 (13%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF------DTKNESAINQWLEWESVELFPSVLSFF-- 95
+P L D ++ +N Y+++ K + + + ++ +
Sbjct: 60 LPYLI-DGTHKITQSNAILRYIARKHNLCGESEKEQIREDILEN-QFMDSRMQLAKLCYD 117
Query: 96 -DNPKVLPDNLKT---KLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRP-L 149
D K+ P+ L+ L + ++ + + + + T D + + P
Sbjct: 118 PDFEKLKPEYLQALPEMLKLYSQFLGKQPWFLGDKITFVDFIAYDVLERNQ---VFEPSC 174
Query: 150 LSSYTNITPWYDRISKLPQVQKALKT 175
L ++ N+ + R L ++ +K+
Sbjct: 175 LDAFPNLKDFISRFEGLEKISAYMKS 200
|
| >1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A Length = 229 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 30/154 (19%)
Query: 44 VPVLELDDGSQLFSANQS---CLYLSK------FDTKNESAINQWLEWESVELFPSVLSF 94
VP++E DG +L Q+ Y++ D K + I+ ++ + +L +LSF
Sbjct: 55 VPMVE-IDGMKLV---QTRAILNYIAGKYNLYGKDLKERALIDMYVG-GTDDLMGFLLSF 109
Query: 95 FDNP-------------KVLPDNLKTKLNVLNEAISNSFLIENSTTVADICIWTCVYPLL 141
K + + FL+ N + ADI + + +
Sbjct: 110 PFLSAEDKVKQCAFVVEKATSRYFP-AYEKVLKDHGQDFLVGNRLSWADIHLLEAILMVE 168
Query: 142 SDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
LS + + + RIS +P ++K L
Sbjct: 169 EKKS--DALSGFPLLQAFKKRISSIPTIKKFLAP 200
|
| >3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 Length = 224 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 18/145 (12%), Positives = 49/145 (33%), Gaps = 17/145 (11%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF-----DTKNESAINQWLEWESVELFPSVLSFFDNP 98
+P L D +++ +N Y+++ +T+ E +E + ++ ++ +
Sbjct: 63 LPYLL-DGKNKITQSNAILRYIARKHNMCGETEEEKIRVDIIENQVMDFRTQLIRLCYSS 121
Query: 99 ------KVLPDNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRP-LL 150
+ L +L + + + T D + + P L
Sbjct: 122 DHEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTYDILDQNR---IFDPKCL 178
Query: 151 SSYTNITPWYDRISKLPQVQKALKT 175
+ N+ + R L ++ L++
Sbjct: 179 DEFPNLKAFMCRFEALEKIAAYLQS 203
|
| >1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans} Length = 208 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 33/159 (20%)
Query: 44 VPVLELDDGSQLFSANQS---CLYLSK------FDTKNESAINQWLEWESVELFPSVLSF 94
+PVL DG +L QS YL++ + E+ ++ + + F
Sbjct: 52 LPVLN-IDGFELP---QSGAILRYLARKFGFAGKTPEEEAWVDAVHD-LFKDFLAEFKKF 106
Query: 95 FDNP--------------KVLPDNLKTKLNVLNEAISNS---FLIENSTTVADICIWTCV 137
+ T N+LN + S FLI + T AD+ + +
Sbjct: 107 AAERRSGKSAEEVEKFRSEFFLPARNTYFNILNGLLEKSNSGFLIGSDITFADLVVVDNL 166
Query: 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176
L + S +T + ++++ P +++ +
Sbjct: 167 LTLKNYGLF--DESEFTKLAALREKVNSYPGIKEYIAKR 203
|
| >2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A* Length = 214 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 22/163 (13%), Positives = 47/163 (28%), Gaps = 39/163 (23%)
Query: 42 KTVPVLELDDGSQLFSANQS---CLYL-SKF--------DTKNESAINQWLEWESVELFP 89
+ VP L+ L QS +L ++ D + ++ P
Sbjct: 52 QLVPALD-TGAQVLI---QSPAIIEWLEEQYPTPALLPADADGRQRVRALAAIVGCDIHP 107
Query: 90 ----SVLSFF------DNPKVLPDNLKTKLNVLN--EAISNSFLIE------NSTTVADI 131
+L + D + + EA+ ++ T+AD
Sbjct: 108 INNRRILEYLRKTFGADEAAINAWCGTWISAGFDAYEALLAVDPKRGRYSFGDTPTLADC 167
Query: 132 CIWTCVYPLLSDSKVRPL-LSSYTNITPWYDRISKLPQVQKAL 173
+ P + ++ + L+ Y I +L ++A
Sbjct: 168 YL----VPQVESARRFQVDLTPYPLIRAVDAACGELDAFRRAA 206
|
| >3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli} Length = 202 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 73/200 (36%)
Query: 24 TKLDVELVDV----ADARLL----LSKTVPVLELDDGSQLFSANQSCLYLSKFDTKNES- 74
+ E ++ AD + L K VPVL ++G F +S
Sbjct: 22 KGITFEFINELPYNADNGVAQFNPLGK-VPVLVTEEGECWF----------------DSP 64
Query: 75 AINQWLE--WESVELFPS----------VLSFFDN--------------PKVLPD----- 103
I +++E + + P + + D P
Sbjct: 65 IIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMDAGLVSVREQARPAAQQSEDELL 124
Query: 104 ----NLKTKLNVLNEAISNSFLIENSTTVADI---CIWTCV---YPLLSDSKVRPLLSSY 153
+ L+VL + + L ++ +A I C + RP L
Sbjct: 125 RQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVK- 183
Query: 154 TNITPWYDRISKLPQVQKAL 173
+ + +
Sbjct: 184 -----LVENLFSRESFARTE 198
|
| >3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A* Length = 226 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 32/197 (16%), Positives = 54/197 (27%), Gaps = 67/197 (34%)
Query: 25 KLDVELVDV----ADARLLL---SKTVPVLELDDGSQLFSANQSCLYLSKFDTKNES-AI 76
K+D + V AD ++ VP L +DDG LF +S I
Sbjct: 25 KIDYQFVLEDVWNADTQIHQFNPLGKVPCLVMDDGGALF----------------DSRVI 68
Query: 77 NQWLE--WESVELFPS----------VLSFFDN---------------PKVLPD------ 103
++ + L P + D
Sbjct: 69 AEYADTLSPVARLIPPSGRERVEVRCWEALADGLLDAAVALRVEQTQRTPEQRSESWITR 128
Query: 104 ---NLKTKLNVLNEAI-SNSFLIENSTTVADI---CIWTCVYPLLSDSKVRPLLSSYTNI 156
+ L ++ + ++ N T+ADI C + R + N+
Sbjct: 129 QHHKIDEALKAMSRGLADRTWCNGNHLTLADIAVGCALAYLDFRQPQVDWR---EQHANL 185
Query: 157 TPWYDRISKLPQVQKAL 173
+Y RI K P +
Sbjct: 186 AAFYTRIEKRPSFLETQ 202
|
| >3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli} Length = 215 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 22/131 (16%)
Query: 63 LYLS----KF---DTKNESAINQWLEWESVELFPSV--LSFFD--NPKVLP-------DN 104
LYL+ F +T+ +A QWL W+ L P + F+ P+ +P
Sbjct: 77 LYLAEKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVE 136
Query: 105 LKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRI 163
+ +VLN+ + NS +L + ++ADI W V ++ R L+ Y + W++RI
Sbjct: 137 TQRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAW---TRQRIDLAMYPAVKNWHERI 193
Query: 164 SKLPQVQKALK 174
P +AL
Sbjct: 194 RSRPATGQALL 204
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 23/72 (31%), Positives = 32/72 (44%)
Query: 845 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQT 904
+S+ EL ++ATQG LVR +K+ K E V L+SLK +A + A
Sbjct: 7 ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKADCPPGN 66
Query: 905 SATPSASDNSAD 916
A S A
Sbjct: 67 PAPTSNHGPDAT 78
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 23/72 (31%), Positives = 32/72 (44%)
Query: 1031 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQT 1090
+S+ EL ++ATQG LVR +K+ K E V L+SLK +A + A
Sbjct: 7 ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKADCPPGN 66
Query: 1091 SATPSASDNSAD 1102
A S A
Sbjct: 67 PAPTSNHGPDAT 78
|
| >1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A* Length = 211 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 23/151 (15%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF------DTKNESAINQWLE--------WESVELFP 89
VP+L+ L + YLSK NE + + + LF
Sbjct: 59 VPILQ-IGDLILAQSQAIVRYLSKKYNICGESELNEFYADMIFCGVQDIHYKFNNTNLFK 117
Query: 90 SVLSFFDNPKVLPDNLKTKLNVLNEAISNS-----FLIENSTTVADICIWTCVYPLLSDS 144
+ F N + LP +L + +N+ + + N+ T AD+ ++ + +
Sbjct: 118 QNETTFLN-EDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYADLAVFNLYDDIETKY 176
Query: 145 KVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
L ++ + + IS LP ++ +
Sbjct: 177 P--SSLKNFPLLKAHNEFISNLPNIKNYITN 205
|
| >1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A Length = 260 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 96 DNPKVLPDNLKTKLNVLNEAISNSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTN 155
T ++ +L+ + T+AD+ + D + +
Sbjct: 182 TENAAAYSAGTTPMSQSRFFDYPVWLVGDKLTIADLAFVPWNNVV--DRIGINIKIEFPE 239
Query: 156 ITPWYDRISKLPQVQKALK 174
+ W + + P V KAL+
Sbjct: 240 VYKWTKHMMRRPAVIKALR 258
|
| >1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5 Length = 249 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 27/153 (17%)
Query: 44 VPVLELDDGSQLFSANQS---CLYLSK------FDTKNESAINQWLEWESVELFPSVLSF 94
+PVLE DG ++ +QS +L+K + I+ ++ + +
Sbjct: 97 MPVLE-VDGKRV---HQSISMARFLAKTVGLCGATPWEDLQIDIVVDT-INDFRLKIAVV 151
Query: 95 FDNP----------KVLPDNLKTKLNVLNEAISNS--FLIENSTTVADICIWTCVYPLLS 142
P + + + L L + + ++ L T AD+ ++
Sbjct: 152 SYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYFAGITD-YMN 210
Query: 143 DSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
R LL Y + D ++ L ++ ++
Sbjct: 211 YMVKRDLLEPYPALRGVVDAVNALEPIKAWIEK 243
|
| >2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus} Length = 206 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 44 VPVLELDDGSQLFSANQSCLYLSKF------DTKNESAINQWLEWESVELFPSVLSFFDN 97
VPVLE DG QL + C YL++ T +E+ ++ + + + + SFF
Sbjct: 51 VPVLE-VDGKQLAQSLAICRYLARQFGFAGKSTFDEAVVDSLAD-QYSDYRVEIKSFFYT 108
Query: 98 P-------------KVLPDNLKTKLNVLNEAISNS---FLIENSTTVADICIWTCVYPLL 141
+VL + + + S FL+ +S T D+ + +L
Sbjct: 109 VIGMREGDVEQLKKEVLLPARDKFFGFITKFLKKSPSGFLVGDSLTWVDLLVSEHNATML 168
Query: 142 SDSKVRP-LLSSYTNITPWYDRISKLPQVQKALKT 175
P L Y + ++I +P+++K ++T
Sbjct: 169 ---TFVPEFLEGYPEVKEHMEKIRAIPKLKKWIET 200
|
| >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 8e-04
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 421 VCPKCR-------YEDARGDQ-CDGCGQLIN 443
CP+C+ + GD C CG +++
Sbjct: 23 TCPECKVYPPKIVERFSEGDVVCALCGLVLS 53
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1175 | |||
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 100.0 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 100.0 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 100.0 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 100.0 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 100.0 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 100.0 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 100.0 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 100.0 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 100.0 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 100.0 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 100.0 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 100.0 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 100.0 | |
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 100.0 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 100.0 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 100.0 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 99.97 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 99.94 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 99.93 | |
| 4glt_A | 225 | Glutathione S-transferase-like protein; structural | 99.93 | |
| 3vk9_A | 216 | Glutathione S-transferase delta; glutathione bindi | 99.92 | |
| 4gci_A | 211 | Glutathione S-transferase; GST, enzyme function in | 99.91 | |
| 4hoj_A | 210 | REGF protein; GST, glutathione S-transferase, enzy | 99.91 | |
| 4hi7_A | 228 | GI20122; GST, glutathione S-transferase, enzyme fu | 99.91 | |
| 4gf0_A | 215 | Glutathione S-transferase; GST, enzyme function in | 99.91 | |
| 1n2a_A | 201 | Glutathione S-transferase; HET: GTS; 1.90A {Escher | 99.9 | |
| 2dsa_A | 203 | Glutathione S-transferase; HET: GSH HPX; 2.10A {Bu | 99.9 | |
| 3tou_A | 226 | Glutathione S-transferase protein; GSH binding sit | 99.89 | |
| 3r2q_A | 202 | Uncharacterized GST-like protein YIBF; transferase | 99.89 | |
| 1pmt_A | 203 | PMGST, GST B1-1, glutathione transferase; glutathi | 99.89 | |
| 4g10_A | 265 | Glutathione S-transferase homolog; thioredoxin fol | 99.89 | |
| 4dej_A | 231 | Glutathione S-transferase related protein; transfe | 99.89 | |
| 1v2a_A | 210 | Glutathione transferase GST1-6; glutathione S-tran | 99.89 | |
| 3ein_A | 209 | GST class-theta, glutathione S-transferase 1-1; de | 99.89 | |
| 3lyp_A | 215 | Stringent starvation protein A; structural genomic | 99.89 | |
| 3ibh_A | 233 | GST-II, saccharomyces cerevisiae GTT2; glutathione | 99.89 | |
| 3lyk_A | 216 | Stringent starvation protein A homolog; structural | 99.89 | |
| 3m0f_A | 213 | Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu | 99.89 | |
| 1f2e_A | 201 | Glutathione S-transferase; GST complexed with glut | 99.89 | |
| 3gx0_A | 215 | GST-like protein YFCG; transferase, glutathione, g | 99.89 | |
| 2pvq_A | 201 | Glutathione S-transferase; xenobiotics detoxificat | 99.88 | |
| 3f6d_A | 219 | Adgstd4-4, glutathione transferase GST1-4; HET: GT | 99.88 | |
| 3m8n_A | 225 | Possible glutathione S-transferase; PSI-II, struct | 99.88 | |
| 3m3m_A | 210 | Glutathione S-transferase; PSI-II, structural geno | 99.88 | |
| 3ay8_A | 216 | Glutathione S-transferase; GST fold, GST binding, | 99.88 | |
| 2gsq_A | 202 | Squid GST, glutathione S-transferase; squid digest | 99.88 | |
| 2cvd_A | 198 | Glutathione-requiring prostaglandin D synthase; gl | 99.88 | |
| 4hz2_A | 230 | Glutathione S-transferase domain; glutathione,enzy | 99.88 | |
| 1pn9_A | 209 | GST class-delta, glutathione S-transferase 1-6; pr | 99.88 | |
| 1axd_A | 209 | Glutathione S-transferase I; transferase, herbicid | 99.88 | |
| 3lxz_A | 229 | Glutathione S-transferase family protein; structur | 99.88 | |
| 1r5a_A | 218 | Glutathione transferase; glutathione S-transferase | 99.88 | |
| 1tu7_A | 208 | Glutathione S-transferase 2; HET: GSH; 1.50A {Onch | 99.88 | |
| 4iel_A | 229 | Glutathione S-transferase, N-terminal domain PROT; | 99.88 | |
| 1yy7_A | 213 | SSPA, stringent starvation protein A; GST fold, tr | 99.88 | |
| 1zl9_A | 207 | GST class-sigma, glutathione S-transferase 5; glut | 99.88 | |
| 3uar_A | 227 | Glutathione S-transferase; GSH binding site; HET: | 99.87 | |
| 4ikh_A | 244 | Glutathione S-transferase; enzyme function initiat | 99.87 | |
| 1tw9_A | 206 | Glutathione S-transferase 2; 1.71A {Heligmosomoide | 99.87 | |
| 3q18_A | 239 | GSTO-2, glutathione S-transferase omega-2; glutath | 99.87 | |
| 1yq1_A | 208 | Glutathione S-transferase; nematoda, structural ge | 99.87 | |
| 2x64_A | 207 | Glutathione-S-transferase; detoxification enzyme; | 99.87 | |
| 1gnw_A | 211 | Glutathione S-transferase; herbicide detoxificatio | 99.87 | |
| 1dug_A | 234 | Chimera of glutathione S-transferase-synthetic lin | 99.87 | |
| 3lsz_A | 225 | Glutathione S-transferase; xenobiotic, biodegradat | 99.87 | |
| 1aw9_A | 216 | Glutathione S-transferase III; herbicide detoxific | 99.87 | |
| 2on7_A | 206 | Nagst-1, Na glutathione S-transferase 1; hookworm; | 99.87 | |
| 2on5_A | 206 | Nagst-2, Na glutathione S-transferase 2; hookworm; | 99.87 | |
| 2imi_A | 221 | Epsilon-class glutathione S-transferase; HET: GSH; | 99.87 | |
| 1e6b_A | 221 | Glutathione S-transferase; 1.65A {Arabidopsis thal | 99.87 | |
| 3niv_A | 222 | Glutathione S-transferase; structural genomics, PS | 99.87 | |
| 3ubk_A | 242 | Glutathione transferase; GSH binding; 1.95A {Lepto | 99.87 | |
| 2ws2_A | 204 | NU-class GST, glutathione S-transferase; parasite, | 99.87 | |
| 1gsu_A | 219 | GST, CGSTM1-1, class-MU glutathione S-transferase; | 99.87 | |
| 2a2r_A | 210 | Glutathione S-transferase P; detoxification, nitri | 99.87 | |
| 2wb9_A | 211 | Glutathione transferase sigma class; thioredoxin f | 99.87 | |
| 4hz4_A | 217 | Glutathione-S-transferase; enzyme function initiat | 99.87 | |
| 1m0u_A | 249 | GST2 gene product; flight muscle protein, sigma, t | 99.87 | |
| 2hnl_A | 225 | Glutathione S-transferase 1; prostaglandin synthas | 99.87 | |
| 3vln_A | 241 | GSTO-1, glutathione S-transferase omega-1; GST fol | 99.87 | |
| 3n5o_A | 235 | Glutathione transferase; seattle structural genomi | 99.87 | |
| 2fhe_A | 216 | GST, glutathione S-transferase; transferase-substr | 99.86 | |
| 2vo4_A | 219 | 2,4-D inducible glutathione S-transferase; herbici | 99.86 | |
| 3gtu_B | 224 | Glutathione S-transferase; conjugation, detoxifica | 99.86 | |
| 2v6k_A | 214 | Maleylpyruvate isomerase; glutathione-S-transferas | 99.86 | |
| 2cz2_A | 223 | Maleylacetoacetate isomerase; structural genomics, | 99.86 | |
| 1ljr_A | 244 | HGST T2-2, glutathione S-transferase; HET: GSH; 3. | 99.86 | |
| 3cbu_A | 214 | Probable GST-related protein; thioredoxin fold, GS | 99.86 | |
| 1oe8_A | 211 | Glutathione S-transferase; schistosomiasis, detoxi | 99.86 | |
| 4ecj_A | 244 | Glutathione S-transferase; transferase-like protei | 99.86 | |
| 3iso_A | 218 | Putative glutathione transferase; GST; HET: GSH; 1 | 99.86 | |
| 3rbt_A | 246 | Glutathione transferase O1; glutathione S-transfer | 99.86 | |
| 4id0_A | 214 | Glutathione S-transferase-like protein YIBF; GST, | 99.86 | |
| 2ycd_A | 230 | Glutathione S-transferase; SOIL bacteria, herbicid | 99.86 | |
| 2c4j_A | 218 | Glutathione S-transferase MU 2; glutathione transf | 99.86 | |
| 1okt_A | 211 | Glutathione S-transferase; GST; 1.9A {Plasmodium f | 99.86 | |
| 3ik7_A | 222 | Glutathione S-transferase A4; human GST A4-4, enzy | 99.85 | |
| 3qav_A | 243 | RHO-class glutathione S-transferase; cytosol; 2.10 | 99.85 | |
| 1gwc_A | 230 | Glutathione S-transferase TSI-1; herbicide detoxif | 99.85 | |
| 1k3y_A | 221 | GSTA1-1, glutathione S-transferase A1; S-hexyl glu | 99.85 | |
| 4exj_A | 238 | Uncharacterized protein; transferase-like protein, | 99.85 | |
| 1nhy_A | 219 | EF-1-gamma 1, elongation factor 1-gamma 1; protein | 99.85 | |
| 3bby_A | 215 | Uncharacterized GST-like protein YFCF; NP_416804.1 | 99.84 | |
| 1oyj_A | 231 | Glutathione S-transferase; herbicide detoxificatio | 99.84 | |
| 1b48_A | 221 | GST, mgsta4-4, protein (glutathione S-transferase) | 99.84 | |
| 1vf1_A | 229 | Glutathione S-transferase 3; detoxification; HET: | 99.84 | |
| 1k0d_A | 260 | URE2 protein; nitrate assimilation, structural gen | 99.84 | |
| 1b8x_A | 280 | Protein (AML-1B); nuclear matrix targeting signal | 99.83 | |
| 2c3n_A | 247 | Glutathione S-transferase theta 1; glutathione tra | 99.83 | |
| 3c8e_A | 288 | YGHU, glutathione S-transferase homologue; glutath | 99.82 | |
| 3h1n_A | 252 | Probable glutathione S-transferase; APC84167, bord | 99.81 | |
| 1bg5_A | 254 | MAB, fusion protein of alpha-Na,K-ATPase with glut | 99.81 | |
| 4ags_A | 471 | Thiol-dependent reductase 1; transferase, leishman | 99.8 | |
| 1k0m_A | 241 | CLIC1, NCC27, chloride intracellular channel prote | 99.8 | |
| 3ir4_A | 218 | Glutaredoxin 2; glutathione, IDP00895, structural | 99.79 | |
| 4ags_A | 471 | Thiol-dependent reductase 1; transferase, leishman | 99.79 | |
| 2fno_A | 248 | AGR_PAT_752P; thioredoxin fold, GST C-terminal dom | 99.78 | |
| 2r4v_A | 247 | XAP121, chloride intracellular channel protein 2; | 99.77 | |
| 2ahe_A | 267 | Chloride intracellular channel protein 4; glutathi | 99.75 | |
| 3ic8_A | 310 | Uncharacterized GST-like proteinprotein; glutathio | 99.74 | |
| 3fy7_A | 250 | Chloride intracellular channel protein 3; GST, glu | 99.72 | |
| 3m1g_A | 362 | Putative glutathione S-transferase; ECM4-like subf | 99.71 | |
| 2yv7_A | 260 | CG10997-PA, LD46306P, CLIC; dmclic, chloride ION c | 99.71 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 99.71 | |
| 2hra_A | 209 | Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, l | 99.71 | |
| 1z9h_A | 290 | Membrane-associated prostaglandin E synthase-2; me | 99.7 | |
| 3ppu_A | 352 | Glutathione-S-transferase; GST fold; HET: GSH; 2.3 | 99.69 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.69 | |
| 2yv9_A | 291 | Chloride intracellular channel EXC-4; chloride ION | 99.68 | |
| 4fqu_A | 313 | Putative glutathione transferase; glutathionyl-hyd | 99.67 | |
| 4f03_A | 253 | Glutathione transferase; GST fold; 1.80A {Phaneroc | 99.67 | |
| 4g0i_A | 328 | Protein YQJG; glutathionyl-hydroquinone reductase, | 99.67 | |
| 2uz8_A | 174 | Eukaryotic translation elongation factor 1 epsilon | 99.65 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 99.63 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 99.59 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 99.53 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 99.48 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 99.47 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 99.47 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 99.47 | |
| 2hsn_A | 160 | Methionyl-tRNA synthetase, cytoplasmic; protein co | 99.46 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 99.42 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 99.39 | |
| 1fyj_A | 57 | Multifunctional aminoacyl-tRNA synthetase; helix-t | 99.31 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 99.28 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 99.25 | |
| 2djv_A | 79 | Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS d | 99.24 | |
| 1fyj_A | 57 | Multifunctional aminoacyl-tRNA synthetase; helix-t | 99.21 | |
| 1d2d_A | 59 | TRNA synthetase, tRNA ligase; tRNA synthetase (lig | 99.21 | |
| 1d2d_A | 59 | TRNA synthetase, tRNA ligase; tRNA synthetase (lig | 99.2 | |
| 2djv_A | 79 | Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS d | 99.05 | |
| 2hqt_A | 124 | GU4 nucleic-binding protein 1; GST-fold, biosynthe | 98.85 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 98.41 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 98.25 | |
| 1x59_A | 73 | Histidyl-tRNA synthetase; hisrs, structural genomi | 97.95 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 97.95 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 97.81 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 97.65 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 97.41 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 97.28 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 97.26 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 97.22 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 97.19 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 97.16 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 97.06 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 96.9 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 96.83 | |
| 3sz3_A | 341 | Tryptophanyl-tRNA synthetase; structural genomics, | 96.58 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 96.57 | |
| 1aba_A | 87 | Glutaredoxin; electron transport; HET: MES; 1.45A | 96.48 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 96.44 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 96.33 | |
| 3n9i_A | 346 | Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga | 96.18 | |
| 1x59_A | 73 | Histidyl-tRNA synthetase; hisrs, structural genomi | 96.05 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 96.04 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 95.91 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 95.69 | |
| 1t1v_A | 93 | SH3BGRL3, SH3 domain-binding glutamic acid-rich pr | 94.68 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 94.38 | |
| 3h8q_A | 114 | Thioredoxin reductase 3; oxidoreductase, structura | 94.15 | |
| 1wik_A | 109 | Thioredoxin-like protein 2; picot homology 2 domai | 93.27 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 93.23 | |
| 2ct6_A | 111 | SH3 domain-binding glutamic acid-rich-like protein | 92.91 | |
| 3zyw_A | 111 | Glutaredoxin-3; metal binding protein; 1.84A {Homo | 92.81 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 92.75 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 92.23 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 91.84 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 91.76 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 91.69 | |
| 3ctg_A | 129 | Glutaredoxin-2; reduced form, electron transport, | 91.42 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 91.29 | |
| 3ipz_A | 109 | Monothiol glutaredoxin-S14, chloroplastic; electro | 91.19 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 91.12 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 91.1 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 90.93 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 90.91 | |
| 2wci_A | 135 | Glutaredoxin-4; redox-active center, iron-sulfur c | 90.87 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 90.65 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 89.9 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 89.65 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 89.64 | |
| 2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 89.63 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 89.35 | |
| 1u6t_A | 121 | SH3 domain-binding glutamic acid-rich-like protein | 89.26 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 89.01 | |
| 3l4n_A | 127 | Monothiol glutaredoxin-6; C-terminal domain of GRX | 88.91 | |
| 2wem_A | 118 | Glutaredoxin-related protein 5; chromosome 14 open | 87.29 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 87.01 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 86.52 | |
| 3gx8_A | 121 | Monothiol glutaredoxin-5, mitochondrial; TRX fold, | 85.2 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 84.72 | |
| 3prh_A | 388 | Tryptophanyl-tRNA synthetase; TRPRS, protein biosy | 84.05 | |
| 3a04_A | 372 | Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR | 83.71 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 83.31 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 82.7 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 82.43 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 82.22 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 81.44 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 80.81 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 80.76 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 80.54 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 80.38 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 80.25 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 80.11 |
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-107 Score=1016.99 Aligned_cols=529 Identities=33% Similarity=0.662 Sum_probs=488.5
Q ss_pred CcEEEEccCCCCCCCCCCchhhh-hhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIG-CVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~-~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
++|+||+|||||||.|||||+++ .++ +|+++||+||+||+|+|++||||||+||+.+|+++|++|++++++|++.|++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~-~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLP-ADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHH-HHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHH-HHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998 555 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
+|++|||++|+|++|+++.|.+.+|++|.+|+++|+||++.++++||+.|++||+|+||+|+||.|++++++|++|+.||
T Consensus 81 ~~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G 160 (722)
T 1rqg_A 81 TFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCG 160 (722)
T ss_dssp HHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSC
T ss_pred HHHHhCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcc
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIP 519 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~p 519 (1175)
+.+++.++++|+|+|||++++++.++||||+|++|++.++++++++. ||++.++++.+||++|++|||||||++||+|
T Consensus 161 ~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~--wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~p 238 (722)
T 1rqg_A 161 RPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP--WKPNVKNMVLSWIEEGLEERAITRDLNWGIP 238 (722)
T ss_dssp CCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC--CCHHHHHHHHHHHTTCCCCEECEECCSSSCB
T ss_pred cccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHCCCcccceeccccCccc
Confidence 99999999999999999999999999999999999999999999874 9999999999999889999999999999999
Q ss_pred cCCC--CCCCce--EEecCc------------------cccccCCC-CCCCCcceEEEEeeccccchhHhHHHHHHHHhC
Q psy7266 520 VPLP--GFENKY--SLSSSP------------------SLVQFLPT-ATPQSKITLYQFMAKDNVPFHSIMFPATLVAAG 576 (1175)
Q Consensus 520 iP~~--~~e~~v--vWfds~------------------~~~~~wp~-~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~ 576 (1175)
||++ +.++++ ||||++ .|..||+. + .++..+||+|+||++||+++|||++++++
T Consensus 239 iP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd---~~~~~~h~~GkDii~fH~~~wpA~l~~~~ 315 (722)
T 1rqg_A 239 VPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNID---GQTRVIHFIGKDNIPFHAIFWPAFLMAYG 315 (722)
T ss_dssp CSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSS---CCEEEEEEEEGGGHHHHHTHHHHHHHTTC
T ss_pred cCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCC---CCCeeEEEccccccccchhhhHHHHhccC
Confidence 9985 345666 999986 14568983 3 35667999999999999999999999876
Q ss_pred C--------CcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhH
Q psy7266 577 D--------QYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNS 648 (1175)
Q Consensus 577 ~--------~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~ 648 (1175)
. ++++|++|++||||+.+|+|||||+||+|+|.++++. ||+|++||||++.+++++|++|+++.|..++|+
T Consensus 316 ~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~-ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~ 394 (722)
T 1rqg_A 316 KYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINE 394 (722)
T ss_dssp CBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTT-SCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHH
T ss_pred CCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHh-cCchHHHHHHHhcCCCCCCCccCHHHHHHHHHH
Confidence 3 4788999999999999999999999999999999995 999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 649 ELLNNLGNFINRALSFIEKNYGSTIPE-ISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 649 ~l~~~l~n~~~r~~~~~~~~~~~~~p~-~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
+|+++++|+++|+.+|+.+++++.+|. ..+...|+|++++++.+++.+.++|++|+|+.|++.|++|++++|+|++..+
T Consensus 395 ~l~~~l~N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~Yi~~~k 474 (722)
T 1rqg_A 395 ELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQ 474 (722)
T ss_dssp TTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998877764 3457789999999999999999999999999999999999999999999999
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCc
Q psy7266 728 PWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLF 807 (1175)
Q Consensus 728 pw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF 807 (1175)
||.+.++ +..++.+++++++++++.+++||+|||||+||+||++|+.+.. ..++. ..+++||+|+++.+||
T Consensus 475 pw~~~k~---~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~~~----~~w~~--~~~~~g~~~~~~~~lf 545 (722)
T 1rqg_A 475 PWKTAKE---DKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEV----KRWEF--RELPAGHKVRKPEILF 545 (722)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSC----CCSSC--CCCCTTCBCCCCCCSC
T ss_pred chhhcCC---CHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCCcc----cCchh--ccCCCCCCcCCCCCCc
Confidence 9988764 3456778999999999999999999999999999999998642 01111 2367899999999999
Q ss_pred cccchhhhHHHHHHhcCc
Q psy7266 808 RKIEQAQVDEWKLKYGGQ 825 (1175)
Q Consensus 808 ~ki~~~~ie~~~~~~~g~ 825 (1175)
+||+.++++++.+.++++
T Consensus 546 ~ri~~~~~~~~~~~~~~~ 563 (722)
T 1rqg_A 546 KKVTDDQIIYFILNYMAK 563 (722)
T ss_dssp CCCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHhhcccc
Confidence 999999999888776665
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-100 Score=934.32 Aligned_cols=524 Identities=26% Similarity=0.495 Sum_probs=482.6
Q ss_pred CCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHH
Q psy7266 276 PQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFA 355 (1175)
Q Consensus 276 p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~ 355 (1175)
|.+++++||||+|||||||+|||||++++++ +|+++||+||+||+|+|++|||+||++|+..|++.|++|.++++++.+
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~-~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 91 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLEHIQ-ADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQ 91 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHHHHH-HHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHHHHH-HHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 3457899999999999999999999998777 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcc
Q psy7266 356 IHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQC 435 (1175)
Q Consensus 356 ~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c 435 (1175)
.|+++|++|||++|.+++|+++.|.+.|+++|.+|+++|+||++++.++||+.|+++|+|++|+|+||.|++.+++|++|
T Consensus 92 ~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~c 171 (560)
T 3h99_A 92 EHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNC 171 (560)
T ss_dssp HHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBC
T ss_pred HHHHHHHHcCCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccC-
Q psy7266 436 DGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDL- 514 (1175)
Q Consensus 436 ~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~- 514 (1175)
+.||+.+++.++++|+|.+||++++.+.++||||+++++++.+.+++++. .|+++.++.+.+|++++++||||||++
T Consensus 172 e~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~D~~IsR~~~ 249 (560)
T 3h99_A 172 EVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG--ALQEQVANKMQEWFESGLQQWDISRDAP 249 (560)
T ss_dssp TTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTS--CSCHHHHHHHHHHHHHCCCCEECEEESS
T ss_pred hhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhcCCCCCCccccCC
Confidence 99999999999999999999999999999999999999999999999884 599999999999998899999999998
Q ss_pred CCCcccCCCCCCCce--EEecCc------------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHH
Q psy7266 515 KWGIPVPLPGFENKY--SLSSSP------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVA 574 (1175)
Q Consensus 515 ~WG~piP~~~~e~~v--vWfds~------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~ 574 (1175)
+||+|||.+ +++| ||||++ .|..|||.+ .+++++||+|+||++||+++||+++++
T Consensus 250 ~WG~~iP~~--~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~---~~~~~~~~~G~D~~~fh~~~~~a~l~~ 324 (560)
T 3h99_A 250 YFGFEIPNA--PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKD---STAELYHFIGKDIVYFLSLFWPAMLEG 324 (560)
T ss_dssp CSSCBCTTC--TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTT---CCSEEEEEEEGGGHHHHHTHHHHHHHH
T ss_pred cCCeeCCCC--CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCC---CCceeEEEeccccchhHHHHHHHHHHh
Confidence 899999965 5777 999986 256789987 778899999999999999999999999
Q ss_pred hCCCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCC-CCccccHHHHHHHhhHHHHHH
Q psy7266 575 AGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPEN-QDTSFSWQDLATKNNSELLNN 653 (1175)
Q Consensus 575 ~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~-~D~~f~~~~~~~~~n~~l~~~ 653 (1175)
+| +.+|++|++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++..+.+ +|++|+++.+..+.|++|+++
T Consensus 325 ~g--~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~ 401 (560)
T 3h99_A 325 SN--FRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNK 401 (560)
T ss_dssp TT--BCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCC
T ss_pred CC--CCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 86 578899999999999999999999999999999997 99999999999988877 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccC
Q psy7266 654 LGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFK 733 (1175)
Q Consensus 654 l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k 733 (1175)
+||+++|+.+++.+++++.+|. ...|+||+++++.+++.+.++|++|+|+.|++.|++|++.+|+|++.++||.+.+
T Consensus 402 l~n~~~R~~~~~~~~~~~~~~~---~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~k 478 (560)
T 3h99_A 402 VVNLASRNAGFINKRFDGVLAS---ELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAK 478 (560)
T ss_dssp CTHHHHTTHHHHHHHSTTBCCS---SCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCC---ccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcC
Confidence 9999999999999888776654 3468999999999999999999999999999999999999999999999998766
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchh
Q psy7266 734 GSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQA 813 (1175)
Q Consensus 734 ~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~ 813 (1175)
+. .+..++.++++++.++++.+++||+|||||+||+||++||.+ ..+ +.....+ .||+|+++.+||+||+.+
T Consensus 479 ~~-~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~-~~w-----~~~~~~~-~~~~i~~~~~lf~ri~~~ 550 (560)
T 3h99_A 479 QE-GRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE-LTW-----DGIQQPL-LGHKVNPFKALYNRIDMR 550 (560)
T ss_dssp ST-TCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC-CCT-----GGGGSCC-CSCBCCCCSCSCCCCCHH
T ss_pred Cc-CcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC-CCh-----hhhhccC-CCCCCCCCCcCCCCCCHH
Confidence 42 234566778888999999999999999999999999999987 222 2222233 599999999999999999
Q ss_pred hhHHHHHH
Q psy7266 814 QVDEWKLK 821 (1175)
Q Consensus 814 ~ie~~~~~ 821 (1175)
+++++.+.
T Consensus 551 ~~~~~~~~ 558 (560)
T 3h99_A 551 QVEALVEA 558 (560)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988754
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-99 Score=930.04 Aligned_cols=500 Identities=23% Similarity=0.364 Sum_probs=447.9
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
.+++|+||+|+|||||.|||||+++.++ +|+++||+||+||+|+|++||||||+||+.+|+++|++|+++|++|++.|+
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~-~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~ 85 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLI-TDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFK 85 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHH-HHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHH-HHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCccccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGC 438 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~ 438 (1175)
+++++|||++||+++|+++.|.+.|+++|.+|+++|+||++.++++||+.|++||+|++|++.|+.| |+.|
T Consensus 86 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~------g~~~--- 156 (542)
T 3u1f_A 86 KCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKD------GNPC--- 156 (542)
T ss_dssp HHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTT------SCEE---
T ss_pred HHHHHhCCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhcccccc------Cccc---
Confidence 9999999999999999999999999999999999999999999999999999999999999887644 3444
Q ss_pred CCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCCCcEeeeccCC--
Q psy7266 439 GQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITRDLK-- 515 (1175)
Q Consensus 439 g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR~~~-- 515 (1175)
++|+|||++++++.++||||+++++++++.+|++..+..| |...++...+|+.++++|||||||++
T Consensus 157 -----------~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~ 225 (542)
T 3u1f_A 157 -----------KVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATL 225 (542)
T ss_dssp -----------EEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGG
T ss_pred -----------cccCCCCCcceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCc
Confidence 5789999999999999999999999999999999887654 55678889999998999999999987
Q ss_pred --CCcccCCCCCCCce--EEecCc----------------------cc--cccCCCCCCCCcceEEEEeeccccchhHhH
Q psy7266 516 --WGIPVPLPGFENKY--SLSSSP----------------------SL--VQFLPTATPQSKITLYQFMAKDNVPFHSIM 567 (1175)
Q Consensus 516 --WG~piP~~~~e~~v--vWfds~----------------------~~--~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~ 567 (1175)
||+|||.+ ++++ ||||++ .| ..+||.+ +|++|+||++||+++
T Consensus 226 ~~WGipiP~~--~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d--------~~~~G~D~~~fh~~~ 295 (542)
T 3u1f_A 226 HNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPAD--------VHVIGKDILKFHAIY 295 (542)
T ss_dssp TTCSCEETTE--EEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCS--------EEEEEGGGHHHHHTH
T ss_pred CCCCCccCCC--cCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcce--------EEEecccccccccch
Confidence 99999954 4666 999976 11 1235766 899999999999999
Q ss_pred HHHHHHHhCCCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhh
Q psy7266 568 FPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNN 647 (1175)
Q Consensus 568 ~pa~l~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n 647 (1175)
||+++++.| .++|+.|++||||+.+|+|||||+||+|+|.++++. ||+|+|||||++.+++++|++|+++.+.+++|
T Consensus 296 ~~a~l~~~g--~~~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~-ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n 372 (542)
T 3u1f_A 296 WPAFLLSAG--LPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEE-FGYDALKYFLLRESGFSDDGDYSDKNMIARLN 372 (542)
T ss_dssp HHHHHHHHT--CCCCSCEEEECCCEETTBCCBTTTTBCCCHHHHHHH-HCHHHHHHHHHHHCCTTSCCEECHHHHHHHHH
T ss_pred hHHHHHhhc--ccccceeccccceecCCceeccccCCCCChhHHHhh-cCchHHHHHHHhcCcccccccccHHHHHHHhh
Confidence 999999986 678999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Q psy7266 648 SELLNNLGNFINRALSFIEKNYGSTIPE-ISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQ 726 (1175)
Q Consensus 648 ~~l~~~l~n~~~r~~~~~~~~~~~~~p~-~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~ 726 (1175)
++|+|++||+++|+..+.. ++++.+|. ..+...|+|++++++.+++.+.++|++|+|+.|++.|++|++++|+|++..
T Consensus 373 ~~l~n~l~N~~~r~~~~~~-~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~~ 451 (542)
T 3u1f_A 373 GELADTLGNLVMRCTSAKI-NVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDM 451 (542)
T ss_dssp HTTTTTHHHHHHHHHCTTT-STTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhh-cccCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999987654 34444443 356789999999999999999999999999999999999999999999999
Q ss_pred CcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccC---CC
Q psy7266 727 QPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIG---TP 803 (1175)
Q Consensus 727 kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~---~p 803 (1175)
+||.+.++ +.+++.+++++++++++.+++||+|||||+||+||++||++.... .......+..+++||+|+ ++
T Consensus 452 ~pw~l~k~---d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~~~-~~~~~~~~~~l~~g~~i~~~~~~ 527 (542)
T 3u1f_A 452 APWKLVKT---DPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHR-KGIENFEFGAVPPGTRLGPAVEG 527 (542)
T ss_dssp CHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGG-SSGGGGSTTCSCTTCBCCCCCTT
T ss_pred CchhhhcC---CHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCCccc-cchhhccccCCCCCCCcCCcCCC
Confidence 99988774 455778899999999999999999999999999999999976543 222222334688999996 46
Q ss_pred CCCccccchhhhHH
Q psy7266 804 APLFRKIEQAQVDE 817 (1175)
Q Consensus 804 ~~LF~ki~~~~ie~ 817 (1175)
++||+||+.+++++
T Consensus 528 ~~LF~kie~e~~e~ 541 (542)
T 3u1f_A 528 EVLFSKRSTENTKS 541 (542)
T ss_dssp CCSSCCCCCCC---
T ss_pred CCCcCCCChhhhhc
Confidence 89999999887764
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-95 Score=888.87 Aligned_cols=505 Identities=21% Similarity=0.351 Sum_probs=450.1
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
++++|+||+|+|||||+|||||++++++ +|+++||+|++||+|++++|+|+||++|+..|++.|++|+++++++.+.|+
T Consensus 24 ~~~~~~i~~~~py~ng~lHiGH~r~~v~-~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~ 102 (564)
T 3kfl_A 24 KQKVFFATTPIYYVNASPHIGHVYSTLI-VDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFK 102 (564)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHH-HHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCCCCcchhHHHHH-HHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998776 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCccccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGC 438 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~ 438 (1175)
+++++|||++|+|.+|+++.|.+.++++|.+|+++|+||++.+.++||+.|++++++++|.+.|+ .+|..|..
T Consensus 103 ~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~------~~g~~c~~- 175 (564)
T 3kfl_A 103 QCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVD------RDGKPCKV- 175 (564)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEEC------TTSCEEEE-
T ss_pred HHHHHcCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcC------CCCCEecc-
Confidence 99999999999999999999999999999999999999999999999999999999999976663 34544431
Q ss_pred CCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCCCcEeeec----c
Q psy7266 439 GQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITR----D 513 (1175)
Q Consensus 439 g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR----~ 513 (1175)
|.+||++++.+.++||||+++++++.+++|++++...| |...++.+.+|+++||+|||||| +
T Consensus 176 -------------~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~ 242 (564)
T 3kfl_A 176 -------------SLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESV 242 (564)
T ss_dssp -------------ETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGG
T ss_pred -------------ccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCC
Confidence 24689999999999999999999999999999876554 66778999999988999999999 8
Q ss_pred CCCCcccCCCCCCCce--EEecCc-------c--------------c--cccCCCCCCCCcceEEEEeeccccchhHhHH
Q psy7266 514 LKWGIPVPLPGFENKY--SLSSSP-------S--------------L--VQFLPTATPQSKITLYQFMAKDNVPFHSIMF 568 (1175)
Q Consensus 514 ~~WG~piP~~~~e~~v--vWfds~-------~--------------~--~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~ 568 (1175)
++||||||. .+++| |||||+ . | .+|||.+ +|++|+||++||+++|
T Consensus 243 ~~WGipiP~--~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~d--------v~~~GkDii~FH~~~w 312 (564)
T 3kfl_A 243 MNWSIPVPG--DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPAD--------VHVVGKDILKFHAIYW 312 (564)
T ss_dssp TTCSCEETT--EEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCS--------EEEEEGGGHHHHHTHH
T ss_pred CCCCeecCC--CCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccc--------eEEEeecccchHHHHH
Confidence 999999994 36777 999987 1 5 7899998 9999999999999999
Q ss_pred HHHHHHhCCCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhH
Q psy7266 569 PATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNS 648 (1175)
Q Consensus 569 pa~l~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~ 648 (1175)
|++|+++| +++|++|++||||+.+|+|||||+||+|+|.++++. ||+|++||||++..+.++|++|+++.+..++|+
T Consensus 313 pa~L~a~g--~~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~-~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~ 389 (564)
T 3kfl_A 313 PAFLMSAE--LPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKE-FGIDALKYFLMRESNFQDDGDYSDKNMVARLNG 389 (564)
T ss_dssp HHHHHHTT--CCCCSCEEEECCEEETTEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHH
T ss_pred HHHHHhCC--CCCCcEEEEcccEeeCCccccccCCCCCCHHHHHHH-cCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHH
Confidence 99999986 678999999999999999999999999999999997 999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 649 ELLNNLGNFINRALSFIEKNYGSTIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 649 ~l~~~l~n~~~r~~~~~~~~~~~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
+|+++++|+++|+++|+. ++++.+|.. .+...|+|++++++.+++.+.++|++|+|+.|++.|++|++.+|+|++.++
T Consensus 390 ~l~~~l~N~~~R~~~~~~-~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~k 468 (564)
T 3kfl_A 390 ELADTLGNLVSRCVAPKI-NVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENA 468 (564)
T ss_dssp TTTTTHHHHHHHHHCTTT-STTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999988 777777753 457889999999999999999999999999999999999999999999999
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCc-cccCCCCCCccCCC---
Q psy7266 728 PWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPS-LVQFLPTGHKIGTP--- 803 (1175)
Q Consensus 728 pw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~-~~~~l~~Gh~i~~p--- 803 (1175)
||.+.++ +..++.++++++.++++.+++||+||||++||+||++||.+.... ..+.. ....+++||+|+++
T Consensus 469 pW~l~~~---~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~ 543 (564)
T 3kfl_A 469 PWKLVKM---DTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAAR--VGMENYLFGIVKPGTKIAGLAEG 543 (564)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGS--SSGGGSSSCCSCTTCBCCCCCTT
T ss_pred ChhhhcC---CHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCcccc--cCHhHhhcccCCCCCCcCCCCCC
Confidence 9998774 345677889999999999999999999999999999999875321 01111 12347899999999
Q ss_pred CCCccccchhhhHHHHHHhc
Q psy7266 804 APLFRKIEQAQVDEWKLKYG 823 (1175)
Q Consensus 804 ~~LF~ki~~~~ie~~~~~~~ 823 (1175)
.|||+||+.+++++++++++
T Consensus 544 ~~lf~r~~~~~~~~~~~~~~ 563 (564)
T 3kfl_A 544 QVVFQKVTLPTEEGERSSKG 563 (564)
T ss_dssp CCSSCCCCCC----------
T ss_pred CCCcCCCCcchhhhhhhccC
Confidence 99999999999999987764
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-92 Score=859.03 Aligned_cols=493 Identities=25% Similarity=0.391 Sum_probs=431.7
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
++++||||+|+|||||+|||||++++++ +|+++||+|++||+|++++|+|+||++|+..|++.|++|.++++++.+.|+
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~-~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~ 101 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIA-TDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFR 101 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHH-HHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHH-HHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999998777 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCccccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGC 438 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~ 438 (1175)
+++++|||++|.|.+|+++.|.+.++++|.+|+++|+||++.+.++||+.|++++++++|... .+|.
T Consensus 102 ~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~--------~~g~----- 168 (536)
T 4dlp_A 102 RMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR--------ADGV----- 168 (536)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC--------TTSC-----
T ss_pred HHHHHcCCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC--------CCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999988521 1232
Q ss_pred CCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHHHHhhcCCCcEeeecc-CCC
Q psy7266 439 GQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITRD-LKW 516 (1175)
Q Consensus 439 g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~wl~~~l~dw~ISR~-~~W 516 (1175)
+|++||++++.+.++||||+++++++.+.+++++.+.. +|...++.+.+|++++++||||||+ ++|
T Consensus 169 ------------~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~W 236 (536)
T 4dlp_A 169 ------------RYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDW 236 (536)
T ss_dssp ------------EECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CC
T ss_pred ------------cccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcC
Confidence 47789999999999999999999999999999987654 3667789999999889999999997 789
Q ss_pred CcccCCCCCCCce--EEecCc--------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcc
Q psy7266 517 GIPVPLPGFENKY--SLSSSP--------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYT 580 (1175)
Q Consensus 517 G~piP~~~~e~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~ 580 (1175)
|||||.+ +++| |||||+ .|++|||.+ +|++|+||++||+++||++++++| .+
T Consensus 237 GipiP~~--~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~d--------v~~~G~D~~~fh~~~~~a~l~a~g--~~ 304 (536)
T 4dlp_A 237 GIPVPGD--EKHVMYVWVDALTNYITALGYPDTTDERWAYWPAN--------AHIIGKDISRFHAVYWPAFLMSAQ--LP 304 (536)
T ss_dssp SCBCTTC--TTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCS--------EEEEEGGGHHHHHTHHHHHHHHTT--CC
T ss_pred CeeCCCC--CCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcc--------eEEeechHHHHHHHHHHHHHHHCC--CC
Confidence 9999954 5677 999987 467899998 999999999999999999999986 67
Q ss_pred cCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHH
Q psy7266 581 KVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINR 660 (1175)
Q Consensus 581 ~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r 660 (1175)
+|++|++||||+.+|+|||||+||+|+|.++++. ||+|++||||++.++.++|++|+++.+.++.|++|+++++|+++|
T Consensus 305 ~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~~-~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R 383 (536)
T 4dlp_A 305 LPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVER-YGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQR 383 (536)
T ss_dssp CCSCEEEECCEEC------------CCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHH
T ss_pred CCcEEEeeeeEeeCCceecccCCCCCCHHHHHHH-cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999996 999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhH
Q psy7266 661 ALSFIEKNYGSTIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQK 739 (1175)
Q Consensus 661 ~~~~~~~~~~~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~ 739 (1175)
+++|+.+++++.+|.. .+...|+||+++++.+++.+.++|++|+|+.|++.|++|++++|+|++.++||.+.++ +.
T Consensus 384 ~~~~~~~~~~~~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~~~---~~ 460 (536)
T 4dlp_A 384 SLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKT---DP 460 (536)
T ss_dssp HHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH---CH
T ss_pred HHHHHHhhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCchhhcCC---CH
Confidence 9999998888877754 4678999999999999999999999999999999999999999999999999987653 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccc-cCCCCCCccCCCCCCccccchhhhH
Q psy7266 740 SRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLV-QFLPTGHKIGTPAPLFRKIEQAQVD 816 (1175)
Q Consensus 740 ~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~-~~l~~Gh~i~~p~~LF~ki~~~~ie 816 (1175)
.++.++++++.++++.+++||+|||||+||+||++||.+.... .+..+. ..+++||+|+++.|||+||+.++.|
T Consensus 461 ~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~~~~~---~~~~~~~~~~~~g~~~~~~~~lf~ri~~~~~~ 535 (536)
T 4dlp_A 461 ARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKR---QFADVLASPLAGGTDLPAPQPVFPRYVEADEQ 535 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCCTTSC---STHHHHHCCCCTTCBCCCCCCSSCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCcccc---CHHHhhhccCCCCCCcCCCCCCCCCCCCcccC
Confidence 4667889999999999999999999999999999999975432 111111 1578999999999999999987655
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-90 Score=875.60 Aligned_cols=501 Identities=19% Similarity=0.270 Sum_probs=426.5
Q ss_pred cCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 243 KSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 243 ~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
+++.|+|.++|++ |++|++ ++|+... ..++++|+|++|||||||.|||||+++.++ +|+++||+||+||+
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~-------~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l-~Dii~Ry~rm~G~~ 73 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANP-------KSGKPPFVIFMPPPNVTGSLHMGHALDNSL-QDALIRYKRMRGFE 73 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCT-------TCCSCEEEEECCCCBSSSCCCHHHHHHHHH-HHHHHHHHHTTTSE
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccCc-------CCCCCcEEEEcCCCCCCCCcchhhhHHHHH-HHHHHHHHHhCCCc
Confidence 6788999999999 999999 9997643 236789999999999999999999999998 99999999999999
Q ss_pred cccccccCCcchHHHHHHH----HcCCCchh------------hHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHH
Q psy7266 322 TLYVSGTDEYGTATETKAL----EEGLTPRQ------------ICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIV 383 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~----~~g~~p~~------------~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v 383 (1175)
|+|++||||||+|||.+++ +.|++|.+ ++++|.+.|++++++||+++||.+ .|+|+.|.+.|
T Consensus 74 vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v 153 (862)
T 1gax_A 74 AVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAV 153 (862)
T ss_dssp EEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHH
Confidence 9999999999999999887 35888764 478899999999999999999854 49999999999
Q ss_pred HHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec-----c--------------------------------------
Q psy7266 384 QHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE-----G-------------------------------------- 420 (1175)
Q Consensus 384 ~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~-----g-------------------------------------- 420 (1175)
+++|.+|+++|+||++.++++|||.|+|+|+|.+|+ |
T Consensus 154 ~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ 233 (862)
T 1gax_A 154 RYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDE 233 (862)
T ss_dssp HHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCC
T ss_pred HHHHHHHHHCCCEEecccccccCCCcCccccccccccccccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCcc
Confidence 999999999999999999999999999999999875 1
Q ss_pred ----------cCCCccc-------------------------------------------cCCCCCccccc--CCcc---
Q psy7266 421 ----------VCPKCRY-------------------------------------------EDARGDQCDGC--GQLI--- 442 (1175)
Q Consensus 421 ----------~cP~c~~-------------------------------------------~d~~G~~c~~~--g~~~--- 442 (1175)
.||.|+. .+.+|.+|++| |.+.
T Consensus 234 ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~ 313 (862)
T 1gax_A 234 RYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLD 313 (862)
T ss_dssp TTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSB
T ss_pred HHHHHcCCEEECCCCCCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcC
Confidence 2565542 14678899999 7531
Q ss_pred ---------------------ccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHHHH
Q psy7266 443 ---------------------NAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAW 500 (1175)
Q Consensus 443 ---------------------~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~w 500 (1175)
.+++|.+|+|+|||++++++.++||||+++++++.+++++++.... +|.+.++++.+|
T Consensus 314 ~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~w 393 (862)
T 1gax_A 314 RFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDW 393 (862)
T ss_dssp SSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHH
Confidence 2457899999999999999999999999999999999999765444 577889999999
Q ss_pred hhcCCCcEeeeccCCCCcccCCCCCC-------------------------------Cce--EEecCc------------
Q psy7266 501 LKDGLKPRCITRDLKWGIPVPLPGFE-------------------------------NKY--SLSSSP------------ 535 (1175)
Q Consensus 501 l~~~l~dw~ISR~~~WG~piP~~~~e-------------------------------~~v--vWfds~------------ 535 (1175)
| ++++|||||||++||+|||+|+|+ .+| |||||+
T Consensus 394 l-~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~ 472 (862)
T 1gax_A 394 L-ENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEE 472 (862)
T ss_dssp H-HTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSC
T ss_pred H-hcccceeEecccCCCcccCceecCCCCEEEEeccccccccchhhhhcCchheecCCcccceeeccCCcchhhccCCCc
Confidence 9 689999999999999999987542 134 777876
Q ss_pred --cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhh
Q psy7266 536 --SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAK 612 (1175)
Q Consensus 536 --~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i 612 (1175)
++++|||.| ++++|+||++||...+.++.... .+..|++++++||+|+ .+|+|||||+||+|+|.+++
T Consensus 473 ~~~~~~~~P~d--------~~v~G~Dii~~W~a~~~~~~~~~-~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli 543 (862)
T 1gax_A 473 TEDLKAFYPGD--------VLVTGYDILFLWVSRMEVSGYHF-MGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMV 543 (862)
T ss_dssp CHHHHHSCSBS--------CEEEEGGGTTTTHHHHHHHHHHH-SSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHH
T ss_pred hHHHHhhCCce--------EEecCccccccHHHHHHHHHHHh-cCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHH
Confidence 245688888 89999999999766543333322 1345779999999996 79999999999999999999
Q ss_pred hcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCChhhHHHHHHHHH
Q psy7266 613 DTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPE-ISPIHEDFLLLALINR 691 (1175)
Q Consensus 613 ~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~-~~~~~~d~~l~~~l~~ 691 (1175)
+. ||+|++||||++.++.++|++|+++.+... ++++++++|. .+|+..++++..+. ..++..|+||+++++.
T Consensus 544 ~~-yGaDalR~~ll~~~~~~~D~~fs~~~l~~~--~~f~nkl~N~----~rf~~~~~~~~~~~~~~~~~~D~~il~~l~~ 616 (862)
T 1gax_A 544 ER-YGADALRFALIYLATGGQDIRLDLRWLEMA--RNFANKLYNA----ARFVLLSREGFQAKEDTPTLADRFMRSRLSR 616 (862)
T ss_dssp HH-HCHHHHHHHHHHHCCTTCCEECCHHHHHHH--HHHHHHHHHH----HHHHHHHSSSCCCCBCCCCHHHHHHHHHHHH
T ss_pred HH-cChHHHHHHHHhcCCCCCCCccCHHHHHHH--HHHHHHHHHH----HHHHHhcccCCCCccccCCHHHHHHHHHHHH
Confidence 96 999999999999888999999999999864 3467777775 34555555543221 2357789999999999
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHH
Q psy7266 692 ELSAYYSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTAS 769 (1175)
Q Consensus 692 ~~~~~~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se 769 (1175)
+++.+.++|++|+|+.|++.|++|+ ++||+|++.++||.. .+ ..+++.++.++++.+++||+|||||+||
T Consensus 617 ~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~-~~-------~~~~~~~l~~~l~~~~~lL~P~~P~~aE 688 (862)
T 1gax_A 617 GVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALK-AG-------NAHTLRTLEEVLAVLLKLLHPMMPFLTS 688 (862)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHH-TT-------BHHHHHHHHHHHHHHHHHHTTTSHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchhhh-cc-------HHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999999999999997 799999999999853 21 1245567789999999999999999999
Q ss_pred HHHHHcCC
Q psy7266 770 TIASQLGA 777 (1175)
Q Consensus 770 ~i~~~L~~ 777 (1175)
+||++|+.
T Consensus 689 eiw~~L~~ 696 (862)
T 1gax_A 689 ELYQALTG 696 (862)
T ss_dssp HHHHHHHC
T ss_pred HHHHhcCC
Confidence 99999974
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-88 Score=825.99 Aligned_cols=491 Identities=27% Similarity=0.425 Sum_probs=438.8
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
+++.|+|++|+|||||.|||||+++.++ +|+++||+||+||+|+|++|||+||+||+.+|+++|++|.++|+++.+.|+
T Consensus 10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~-~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 88 (524)
T 2x1l_A 10 GSEPFYITTAIAYPNGVPHIGHAYEYIA-TDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQ 88 (524)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHH-HHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEeeCCCCCCCCcccchhHHHHH-HHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999998887 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceec-ccCCCccccCCCCCcccc
Q psy7266 359 EVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVE-GVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 359 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~-g~cP~c~~~d~~G~~c~~ 437 (1175)
+++++|||++|.+.+|+++.|.+.++++|.+|+++|+||++++.++||+.|++++++.+|+ |+|
T Consensus 89 ~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~--------------- 153 (524)
T 2x1l_A 89 RLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPD--------------- 153 (524)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTT---------------
T ss_pred HHHHHcCCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCC---------------
Confidence 9999999999999999999999999999999999999999999999999999999999984 322
Q ss_pred cCCccccccccCCccc-CCCCccEEeecccccccchhHHHHHHHHHHhcCCC-CCchHHHHHHHHhhcCCCcEeeeccC-
Q psy7266 438 CGQLINAIELIQPRCK-QCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITRDL- 514 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~-r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~wl~~~l~dw~ISR~~- 514 (1175)
| +.|+ +||.+++.+.++||||+++++++.++++++++... +|...++.+.+|+.++++|||||||+
T Consensus 154 -G----------~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~ 222 (524)
T 2x1l_A 154 -G----------TRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTF 222 (524)
T ss_dssp -S----------CEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSC
T ss_pred -C----------CccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCC
Confidence 2 2588 99999999999999999999999999999875333 47778899999997799999999996
Q ss_pred CCCcccCCCCCCCce--EEecCc---------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC
Q psy7266 515 KWGIPVPLPGFENKY--SLSSSP---------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD 577 (1175)
Q Consensus 515 ~WG~piP~~~~e~~v--vWfds~---------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~ 577 (1175)
+||+||| +++++| |||||+ .|.+|||.| +|++|+||++||+++||+++++.|
T Consensus 223 ~WG~~iP--~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~d--------i~~~G~D~~~fh~~~~~a~l~~~g- 291 (524)
T 2x1l_A 223 DWGVPVP--DHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPAD--------LHMIGKDIIRFHTVYWPAFLMSAG- 291 (524)
T ss_dssp CSSCEET--TEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCS--------EEEEEGGGHHHHHTHHHHHHHHHT-
T ss_pred CcCccCC--CCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCe--------EEEEeechhHhHHHHHHHHHHHCC-
Confidence 6999999 335566 999986 245689987 999999999999999999999886
Q ss_pred CcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHH
Q psy7266 578 QYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNF 657 (1175)
Q Consensus 578 ~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~ 657 (1175)
.++|+++++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++.++.++|++|+++.+....|++|+|.++|+
T Consensus 292 -~~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~ 369 (524)
T 2x1l_A 292 -LPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDT-FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNL 369 (524)
T ss_dssp -CCCCSCEEEECCEEECSCSEETTTEESSCHHHHHHH-HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHH
T ss_pred -CCCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999996 999999999999888899999999999998888899999999
Q ss_pred HHHHHHHHHHhcCCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCC-
Q psy7266 658 INRALSFIEKNYGSTIPE-ISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGS- 735 (1175)
Q Consensus 658 ~~r~~~~~~~~~~~~~p~-~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~- 735 (1175)
++|+..++.+++++.+|. ..+.+.|+|++++++.+++.+.++|++|+|+.|++.|++|++.+|+|++.++||.+.++.
T Consensus 370 ~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~l~~~~~ 449 (524)
T 2x1l_A 370 AQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDA 449 (524)
T ss_dssp HHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTCCS
T ss_pred HHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCcc
Confidence 999999988777665553 345678999999999999999999999999999999999999999999999999887642
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccch
Q psy7266 736 PEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQ 812 (1175)
Q Consensus 736 ~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~ 812 (1175)
..+..++.++++++.++++.+++||+|||||+||+||++|+.+.... . +..+...+++||+|+++.|||+||+.
T Consensus 450 ~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~~-~--~~~~~~~~~~~~~~~~~~~lf~~~~~ 523 (524)
T 2x1l_A 450 AEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQPTDER-D--FSAIANRIKPGTSLPAPSGIFPRYQN 523 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCCTTSC-S--GGGGSSCCCTTCBCCCCCCSSCCCC-
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCcccc-c--hhHhhhcCCCCCCCCCCCCCCCCCCC
Confidence 12445567888999999999999999999999999999999874322 1 11111146789999999999999985
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-87 Score=808.46 Aligned_cols=479 Identities=27% Similarity=0.449 Sum_probs=401.0
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
+++|+||+|+|||||.|||||+++.++ +|+++||+||+||+|++++|||+||+||+.+|+++|++|.++++++.+.|++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~-~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 82 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIA-ADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKK 82 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHH-HHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHH-HHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999998887 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
++++|||++|++++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++++++++..
T Consensus 83 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~------------------- 143 (497)
T 2csx_A 83 LWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAE------------------- 143 (497)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC--------------------------------------
T ss_pred HHHHhCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhcc-------------------
Confidence 9999999999999999999999999999999999999999999999999999999987731
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCCCcEeeec---cCC
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITR---DLK 515 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR---~~~ 515 (1175)
.++|+|||.+++.+.++||||+++++++.+++++++++..+ |...++.+.+|++++++|||||| +.+
T Consensus 144 ---------~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~ 214 (497)
T 2csx_A 144 ---------DHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVK 214 (497)
T ss_dssp -----------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCC
T ss_pred ---------CCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCC
Confidence 15689999999999999999999999999999999876555 44567888899988999999999 457
Q ss_pred CCcccCCCCCCCce--EEecCc-cc-----c---ccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeE
Q psy7266 516 WGIPVPLPGFENKY--SLSSSP-SL-----V---QFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNH 584 (1175)
Q Consensus 516 WG~piP~~~~e~~v--vWfds~-~~-----~---~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~ 584 (1175)
||+|+|.+ ++.+ |||||+ .| . +|||.| +|++|+||++||+++||++++++| +.+|++
T Consensus 215 WG~~iP~~--~~~~i~vW~ds~~~~~s~~~~~~~~~~p~d--------i~~~G~D~~~~H~~~~~a~l~~~g--~~~~~~ 282 (497)
T 2csx_A 215 WGIPVPFD--PEHTIYVWFDALFNYISALEDKVEIYWPAD--------LHLVGKDILRFHTVYWPAFLMSLG--YELPKK 282 (497)
T ss_dssp SSEEETTE--EEEEECSHHHHHTHHHHTTTTTHHHHCSCS--------CEEEEGGGHHHHHTHHHHHHHHHT--CCCCSC
T ss_pred CceecCCC--CCceEEEecccchhhcccCCCcchhhCCce--------EEEeecchhHhHHHHHHHHHHHcC--CCCCcE
Confidence 99999953 4555 999997 22 2 688887 899999999999999999998885 678999
Q ss_pred EEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy7266 585 IMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSF 664 (1175)
Q Consensus 585 i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~ 664 (1175)
+++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++.++.++|++|+++.+....|++|++.++|+++|+.++
T Consensus 283 ~~~~G~v~~~G~KMSKS~GN~i~~~dli~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~ 361 (497)
T 2csx_A 283 VFAHGWWTVEGKKMSKTLGNVVDPYEVVQE-YGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNM 361 (497)
T ss_dssp EEEECCEESSSSBCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHH
T ss_pred EEECcEEEeCCceeCCcCCCCCCHHHHHHH-CCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 9999999999998889999999999999988889999999999999999
Q ss_pred HHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHH
Q psy7266 665 IEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQKSRAST 744 (1175)
Q Consensus 665 ~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~~~~~~ 744 (1175)
+.+.+++.++ ...|+|++++++.+++.+.++|++|+|+.|++.|++|++.+|+|++.++||.+.++ .+..++.+
T Consensus 362 ~~~~~~~~~~----~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~~~~~~~--~~~~~~~~ 435 (497)
T 2csx_A 362 AHKFLGGEVS----GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNKE--RKKEELQK 435 (497)
T ss_dssp HHHHSTTCBC----CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTT--SCHHHHHH
T ss_pred HHHhcCCCCC----chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhccc--ccHHHHHH
Confidence 8876654333 34689999999999999999999999999999999999999999999999977653 23445678
Q ss_pred HHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccch
Q psy7266 745 VLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQ 812 (1175)
Q Consensus 745 vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~ 812 (1175)
+++++.++++.+++||+|||||+||+||++|+.+...+ ....+ ..+ ||+|+++.|||+||+.
T Consensus 436 ~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~~---~~~~~-~~~--~~~~~~~~~lf~~~~~ 497 (497)
T 2csx_A 436 VLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKEFLK---ELKPY-SKN--TYKLGERKILFPKREG 497 (497)
T ss_dssp HHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCSCCCS---SCCSC-CCS--CBCCCCCCCSSCCCCC
T ss_pred HHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCCccch---hhccc-ccC--CCcCCCCCCCCCCCCC
Confidence 88999999999999999999999999999999874332 11111 223 9999999999999973
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-86 Score=805.03 Aligned_cols=479 Identities=25% Similarity=0.386 Sum_probs=427.9
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
+++|+||+|+|||||.|||||+++.++ +|+++||+||+||+|++++|||+||++|+.+|++.|++|.++++++.+.|++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~-~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 80 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKR 80 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHH-HHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHH-HHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999998887 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
++++|||++|++++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++++++++.
T Consensus 81 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~-------------------- 140 (500)
T 2d5b_A 81 AWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV-------------------- 140 (500)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB--------------------
T ss_pred HHHHhCCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc--------------------
Confidence 999999999999999999999999999999999999999999999999999999987752
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCCCcEeeec--c-CC
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITR--D-LK 515 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~wl~~~l~dw~ISR--~-~~ 515 (1175)
+++|+|||.+++.+.++||||+++++++.+.++++++..++ |...++.+.+|++++++|||||| + .+
T Consensus 141 ---------~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~ 211 (500)
T 2d5b_A 141 ---------EGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVP 211 (500)
T ss_dssp ---------TTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCC
T ss_pred ---------CCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeeccccccccc
Confidence 34689999999999999999999999999999999875443 66778899999988999999999 5 57
Q ss_pred CCcccCCCCCCCce--EEecCc-------c------ccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcc
Q psy7266 516 WGIPVPLPGFENKY--SLSSSP-------S------LVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYT 580 (1175)
Q Consensus 516 WG~piP~~~~e~~v--vWfds~-------~------~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~ 580 (1175)
||+|||. ++++| |||||+ . +.+|||.| +|++|+||++||+++|+++++++| ..
T Consensus 212 WG~piP~--~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~d--------i~~~G~D~~~fh~~~~~a~~~~~g--~~ 279 (500)
T 2d5b_A 212 WGIPLPW--DENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHA--------WHLIGKDILKPHAVFWPTMLKAAG--IP 279 (500)
T ss_dssp SSCEETT--EEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGE--------EEEEEGGGHHHHHTHHHHHHHHHT--CC
T ss_pred CccccCC--CCCCeeEEccccchhhHHHcCCCCCchHHHcCCCe--------EEEEeechhhhHHHHHHHHHHHcC--CC
Confidence 9999995 35666 999996 2 34678876 999999999999999999998885 67
Q ss_pred cCeEEEeeceeec-CCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHH
Q psy7266 581 KVNHIMATEYLNY-EDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFIN 659 (1175)
Q Consensus 581 ~p~~i~~~g~l~~-~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~ 659 (1175)
+|+++++||||+. +|+|||||+||+|+|.|+++. ||+|++||||++.++.++|++|+++.+.+..|+.|++.++|+++
T Consensus 280 ~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~ 358 (500)
T 2d5b_A 280 MYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEK-YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQ 358 (500)
T ss_dssp CCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCcEEEECceEEeCCCCcccccCCCCCCHHHHHHh-cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988 999999999999999999996 99999999999988889999999999999888899999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhH
Q psy7266 660 RALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKGSPEQK 739 (1175)
Q Consensus 660 r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~~~~~~ 739 (1175)
|+..++.+.+++.++.. .++|++++++.+++.+.++|++|+++.|++.|++|++.+|+|++.++||.+.+++ .
T Consensus 359 r~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~~~~~---~ 431 (500)
T 2d5b_A 359 RTRAMLFRFAEGRIPEP----VAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKE---P 431 (500)
T ss_dssp HHHHHHHHHSTTBCCCC----CCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC---H
T ss_pred HHHHHHHHhcCCCCCch----hHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhccCc---H
Confidence 99998877766555422 2478999999999999999999999999999999999999999999999765432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCcccc
Q psy7266 740 SRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKI 810 (1175)
Q Consensus 740 ~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki 810 (1175)
.++.++++++.++++.+++||+|||||+||+||++|+.+. .. .......+..+++||+|+++.|||+||
T Consensus 432 ~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~lf~~~ 500 (500)
T 2d5b_A 432 EEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE-EV-RLEEAERWGLAEPRPIPEEAPVLFPKK 500 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS-SC-CGGGGGSSCCSCCCBCCSCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCCc-cc-ChhhhhhcccCCCCCCCCCCCCCCCCC
Confidence 4567788999999999999999999999999999999863 11 111101123467899999999999997
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-85 Score=837.12 Aligned_cols=506 Identities=16% Similarity=0.204 Sum_probs=413.6
Q ss_pred cCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCC
Q psy7266 243 KSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRN 321 (1175)
Q Consensus 243 ~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~ 321 (1175)
++.++++.++|.+ +++|++.++|+.... ...++++|+|++|||||||.|||||+++.++ +|+++||+||+||+
T Consensus 14 fpm~~~~~~~E~~~~~~W~~~~~f~~~~~-----~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~-~Dii~Ry~rm~G~~ 87 (917)
T 1ffy_A 14 FPMRGGLPNKEPQIQEKWDAEDQYHKALE-----KNKGNETFILHDGPPYANGNLHMGHALNKIL-KDFIVRYKTMQGFY 87 (917)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTTHHHHHHH-----HTTTSCBCCEECCCCBSSSCCCHHHHHHHHH-HHHHHHHHHTTTCB
T ss_pred CCCCCChHHHhHHHHHHHHHCCCcccchh-----hccCCCceeeCCCCCCCCCcchHHHHHHHHH-HHHHHHHHHhCCCC
Confidence 4567999999999 999999999965321 1236789999999999999999999999888 99999999999999
Q ss_pred cccccccCCcchHHHHHHHHcCCCc------------hhhHHHHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHHH
Q psy7266 322 TLYVSGTDEYGTATETKALEEGLTP------------RQICDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHLF 387 (1175)
Q Consensus 322 v~~~~G~D~~G~~ie~~a~~~g~~p------------~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f 387 (1175)
|+|++||||||+|||.+|++.|++| .++++++.+.++++|++||+++||.+ +|+||.|.+.++++|
T Consensus 88 v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F 167 (917)
T 1ffy_A 88 APYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIF 167 (917)
T ss_dssp CCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHH
T ss_pred CCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHH
Confidence 9999999999999999999999987 46778889999999999999988755 799999999999999
Q ss_pred HHHHHcCCEEeceEEEeeeCCCCcccccceec---ccC--------------------------------CCccc----c
Q psy7266 388 DRVHKAGFTSSASVEQLHCAQCDRFLADRFVE---GVC--------------------------------PKCRY----E 428 (1175)
Q Consensus 388 ~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~---g~c--------------------------------P~c~~----~ 428 (1175)
.+|+++|+||++.++++|||.|+|+|+|++|+ .+| |+|.+ +
T Consensus 168 ~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p 247 (917)
T 1ffy_A 168 GEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHP 247 (917)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCT
T ss_pred HHHHHcCCeEecccceeccCCCCcCcchhhhhcccccCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECC
Confidence 99999999999999999999999999999986 111 11100 0
Q ss_pred ----------CC-------------------C-C--CcccccCC------------------------------------
Q psy7266 429 ----------DA-------------------R-G--DQCDGCGQ------------------------------------ 440 (1175)
Q Consensus 429 ----------d~-------------------~-G--~~c~~~g~------------------------------------ 440 (1175)
+. + - ..++.||.
T Consensus 248 ~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~ 327 (917)
T 1ffy_A 248 ELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTA 327 (917)
T ss_dssp TCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBC
T ss_pred CCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeC
Confidence 00 0 0 11222221
Q ss_pred ----------------------------------cc------------------------ccccccCCcccCCCCccEEe
Q psy7266 441 ----------------------------------LI------------------------NAIELIQPRCKQCSQAPTVK 462 (1175)
Q Consensus 441 ----------------------------------~~------------------------~~~el~~~~c~r~~~~~~~~ 462 (1175)
+. ...+|.+|+||||++++++|
T Consensus 328 Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r 407 (917)
T 1ffy_A 328 PGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFR 407 (917)
T ss_dssp TTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEE
T ss_pred CCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEE
Confidence 00 11246789999999999999
Q ss_pred ecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCC----------------
Q psy7266 463 SSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFE---------------- 526 (1175)
Q Consensus 463 ~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e---------------- 526 (1175)
.++|||++++++++.+++++++.. .+|...++++.+||+ +++||||||||+||+|||+|+|+
T Consensus 408 ~t~QWFi~~~~lr~~~l~~i~~~~-~~P~~~~~r~~~~l~-~~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~ 485 (917)
T 1ffy_A 408 ATPQWFASISKVRQDILDAIENTN-FKVNWGKTRIYNMVR-DRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVAD 485 (917)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTSE-ESSHHHHHHHHHHHH-HCCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHH
T ss_pred eccceEeeHHHHHHHHHHHHhcCc-ccCHHHHHHHHHHHh-cCccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHH
Confidence 999999999999999999999753 346678999999994 79999999999999999985432
Q ss_pred ------------------------------------Cce--EEecCc-------cc--cccCCCCCCCCcceEEEEeecc
Q psy7266 527 ------------------------------------NKY--SLSSSP-------SL--VQFLPTATPQSKITLYQFMAKD 559 (1175)
Q Consensus 527 ------------------------------------~~v--vWfds~-------~~--~~~wp~~~~~~~v~~~~~~GkD 559 (1175)
.+| |||||+ ++ ...||.| +++.|+|
T Consensus 486 ~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~~~~~~P~D--------l~~~G~D 557 (917)
T 1ffy_A 486 LFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPAD--------MYLEGSD 557 (917)
T ss_dssp HHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBS--------EEEEEGG
T ss_pred HhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCchhcCCCce--------EEEEEec
Confidence 134 788875 11 1247887 8999999
Q ss_pred ccc--hhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCcc
Q psy7266 560 NVP--FHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTS 636 (1175)
Q Consensus 560 ~i~--fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~ 636 (1175)
|++ ||.++++++.+. +..|++++++||||+ .+|+|||||+||+|+|.++++. ||+|++||||++ +++++|++
T Consensus 558 ~~r~wf~~~l~~s~~~~---g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~-yGaDalR~~lls-~~~~~D~~ 632 (917)
T 1ffy_A 558 QYRGWFNSSITTSVATR---GVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSS-TDYLADVR 632 (917)
T ss_dssp GGTTHHHHHHHHHHHHH---SSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHT-SCTTSCEE
T ss_pred ccccHHHHHHHHHHHhh---CCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHh-CCHHHHHHHHhc-cCCCCCcc
Confidence 995 888888887643 346789999999997 5999999999999999999996 999999999998 88899999
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCC------CCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q psy7266 637 FSWQDLATKNNSELLNNLGNFINRALSFIEKNYGS------TIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIR 710 (1175)
Q Consensus 637 f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~------~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~ 710 (1175)
|+++.+... +++.+.++|.+ +|+..+..+ .++...+...|+|++++++.+++.+.++|++|+|+.|++
T Consensus 633 fs~~~l~~~--~~~~~kl~n~~----r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~ 706 (917)
T 1ffy_A 633 ISDEILKQT--SDDYRKIRNTL----RFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQ 706 (917)
T ss_dssp CCHHHHHHH--HHHHHHHHHHH----HHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHH--HHHHHHHHHHH----HHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 999998753 34556666654 444433222 233234567899999999999999999999999999999
Q ss_pred HHHHHHH--HHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 711 YILNISR--YCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 711 ~i~~~~~--~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
.|++|+. ++|+|++..++|.+..... +.. ..++..++..++..+++||+|||||+||+||+.|+.
T Consensus 707 ~l~~f~~~~l~~~Yl~~~k~rl~~~~~~-~~~-r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~ 773 (917)
T 1ffy_A 707 EVQNFINVELSNFYLDYGKDILYIEQRD-SHI-RRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPH 773 (917)
T ss_dssp HHHHHHHCCCCCCHHHHHHHHHTTSCTT-CHH-HHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHhcchhhhccCCC-cHH-HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHccc
Confidence 9999986 9999999999987654321 122 234455678899999999999999999999999975
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-86 Score=847.41 Aligned_cols=507 Identities=17% Similarity=0.216 Sum_probs=416.7
Q ss_pred CCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcc
Q psy7266 245 KDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTL 323 (1175)
Q Consensus 245 ~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~ 323 (1175)
..|++.++|++ |++|++.+.|+.... ...++++|+|++|||||||.|||||+++.++ +|+++||+||+||+|+
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~-----~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~-~D~i~R~~rm~G~~v~ 79 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVE-----NRKGGPRYTVYEGPPTANGLPHVGHAQARSY-KDLFPRYKTMRGYYAP 79 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHH-----HTTTSCBCCBCCCCCCTTSCCCTTHHHHHHH-HHHHHHHHHHTTCBCC
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChh-----hcCCCCcEEEecCCCCCCCCCchhhhHhHHH-HHHHHHHHHhcCCccc
Confidence 57999999999 999999999965321 0135789999999999999999999999888 9999999999999999
Q ss_pred cccccCCcchHHHHHHHHc-CCCc----------------hhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHH
Q psy7266 324 YVSGTDEYGTATETKALEE-GLTP----------------RQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQ 384 (1175)
Q Consensus 324 ~~~G~D~~G~~ie~~a~~~-g~~p----------------~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~ 384 (1175)
|++|||+||+|||.+|++. |+++ .++++++.+.+++++++||+++|| +++|+||.|.+.+|
T Consensus 80 ~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~ 159 (821)
T 1ile_A 80 RRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIW 159 (821)
T ss_dssp CEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHH
T ss_pred ccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHH
Confidence 9999999999999999985 8875 356777889999999999966555 56899999999999
Q ss_pred HHHHHHHHcCCEEeceEEEeeeCCCCccccccee-ccc------------------------------------------
Q psy7266 385 HLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFV-EGV------------------------------------------ 421 (1175)
Q Consensus 385 ~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V-~g~------------------------------------------ 421 (1175)
++|.+|+++|+||++.++++|||.|+|+|+|++| +|.
T Consensus 160 ~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~a 239 (821)
T 1ile_A 160 WSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVA 239 (821)
T ss_dssp HHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCC
T ss_pred HHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEE
Confidence 9999999999999999999999999999999998 320
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 422 -------------------------------------------------------------------------------- 421 (1175)
Q Consensus 422 -------------------------------------------------------------------------------- 421 (1175)
T Consensus 240 v~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~ 319 (821)
T 1ile_A 240 AAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVH 319 (821)
T ss_dssp EEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEE
T ss_pred EEECCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceE
Confidence
Q ss_pred -CCCccccCCC-----C----CcccccCCccc-----------------------------cccccCCcccCCCCccEEe
Q psy7266 422 -CPKCRYEDAR-----G----DQCDGCGQLIN-----------------------------AIELIQPRCKQCSQAPTVK 462 (1175)
Q Consensus 422 -cP~c~~~d~~-----G----~~c~~~g~~~~-----------------------------~~el~~~~c~r~~~~~~~~ 462 (1175)
||.|+.+|.. | ..|+.||++.+ ..+|.+|+|||||++++++
T Consensus 320 ~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~ 399 (821)
T 1ile_A 320 QAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYY 399 (821)
T ss_dssp CCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSGGGTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEE
T ss_pred ecCCCCHHHHHHHHHcCCCcceeECCCCcCcccCcCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEE
Confidence 3333322210 0 12455665432 2356789999999999999
Q ss_pred ecccccccchhHHHHHHHHHHhcCCCCCc-hH-HHHHHHHhhcCCCcEeeeccCCCCcccCCCCCC--------------
Q psy7266 463 SSTQLFLELPKIEDKLQSWVSETSDQWSS-NA-RVICKAWLKDGLKPRCITRDLKWGIPVPLPGFE-------------- 526 (1175)
Q Consensus 463 ~~~qwfl~l~~~~~~l~~~~~~~~~~~~~-~~-~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e-------------- 526 (1175)
.++||||+++++++++++++++.. |.| .. ++++.+|| ++++||||||||+||+|||+|+|+
T Consensus 400 ~~~qWF~~~~~~~~~~~~~~~~~~--~~P~~~~~~~~~~~l-~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l 476 (821)
T 1ile_A 400 ATESWFIKNTLFKDELIRNNQEIH--WVPPHIKEGRYGEWL-KNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQEL 476 (821)
T ss_dssp ECCEEEECGGGGHHHHHHHHHHSE--ESSGGGTTTTTHHHH-HTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHH
T ss_pred ecchhhhchHHHHHHHHHHhcCeE--EECchhhHhHHHHHH-hCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHH
Confidence 999999999999999999998863 644 55 35889999 599999999999999999976431
Q ss_pred -----------------------------------Cce--EEecCc---------------cccccCCCCCCCCcceEEE
Q psy7266 527 -----------------------------------NKY--SLSSSP---------------SLVQFLPTATPQSKITLYQ 554 (1175)
Q Consensus 527 -----------------------------------~~v--vWfds~---------------~~~~~wp~~~~~~~v~~~~ 554 (1175)
.+| |||||+ .|.+|||.| +|
T Consensus 477 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~d--------l~ 548 (821)
T 1ile_A 477 KARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPAD--------FI 548 (821)
T ss_dssp HHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBS--------BE
T ss_pred HhhccccccchhhhccccccccccCCCCCCchhhcccccceecccccchHhhcCCCccchHHHhhcCCcc--------cc
Confidence 246 999986 234589998 89
Q ss_pred EeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceee-cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCC
Q psy7266 555 FMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLN-YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQ 633 (1175)
Q Consensus 555 ~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~-~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~ 633 (1175)
++|+||++||.....++..++. +..+|+++++||+++ .+|+|||||+||+|+|.++++. ||+|++||||++..+.++
T Consensus 549 ~~G~D~~r~w~~~~~~~~~~~~-~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~-yGaDalR~~ll~~~~~~~ 626 (821)
T 1ile_A 549 AEGIDQTRGWFNSLHQLGVMLF-GSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYVSAPPEA 626 (821)
T ss_dssp EEEGGGGGTHHHHHHHHHHHHH-SSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTT-TCHHHHHHHHHHHSCSSS
T ss_pred cchhhhhccHHHHHHHHHHHhc-CCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHH-hCHHHHHHHHHhCCCCCC
Confidence 9999999987544333222221 356789999999986 5999999999999999999996 999999999999888999
Q ss_pred CccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHH
Q psy7266 634 DTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIP-----EISPIHEDFLLLALINRELSAYYSVLDKAKLRDG 708 (1175)
Q Consensus 634 D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p-----~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a 708 (1175)
|++|+++.+...+ ++++++++|+++|+..+.. .++..| ...+...|+|++++++.+++.+.++|++|+|+.|
T Consensus 627 d~~fs~~~l~~~~-~~~~~kl~N~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A 703 (821)
T 1ile_A 627 DRRFGPNLVRETV-RDYFLTLWNVYSFFVTYAN--LDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTS 703 (821)
T ss_dssp CEECCHHHHHHHH-HHTHHHHHHHHHHHHHHHH--HHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcEecHHHHHHHH-HHHHHHHHHHHHHHHHhhc--cccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 9999999997643 4588999999988764432 122222 1235678999999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHHHHhcCc--ccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCC
Q psy7266 709 IRYILNIS--RYCNQYMQTQQP--WVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 709 ~~~i~~~~--~~~n~yi~~~kp--w~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~ 778 (1175)
++.|++|+ +++|+|++.+++ |...++ .++ .+++.++.++++.+++||+|||||+||+||++|+..
T Consensus 704 ~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~--~~r---~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~ 772 (821)
T 1ile_A 704 ARALRDFVVEDLSQWYVRRNRRRFWKNEDA--LDR---EAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRS 772 (821)
T ss_dssp HHHHHHHHHHHSSTTTHHHHHHHHHTCTTT--SST---THHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCc--HHH---HHHHHHHHHHHHHHHHHcCCccchHHHHHHHhcccc
Confidence 99999998 899999999865 433221 111 245566788999999999999999999999999853
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-79 Score=786.00 Aligned_cols=497 Identities=17% Similarity=0.252 Sum_probs=396.5
Q ss_pred CCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcc
Q psy7266 245 KDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTL 323 (1175)
Q Consensus 245 ~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~ 323 (1175)
+.|++.++|++ |++|++.++|+.... ...++++|+|++|||||||.|||||+++.++ +|+++||+||+||+|+
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~-----~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~-~Dii~Ry~rm~G~~Vl 75 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIR-----DKPKEKKFYITVAFPYLSGHLHVGHARTYTI-PDVIARFKRMQGYNVL 75 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGG-----GSCGGGCCBEEECCCBCSSCCBHHHHHHHHH-HHHHHHHHHHTTCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCcc-----ccCCCCcEEEEeCCCCCCCCcchhhhHHHHH-HHHHHHHHHcCCCccC
Confidence 56899999999 999999999976531 1123478999999999999999999999888 9999999999999999
Q ss_pred cccccCCcchHHHHHHHHc---------------C---------CCchhhHHHHHHHHHHHHhhccccccccC--CCCC-
Q psy7266 324 YVSGTDEYGTATETKALEE---------------G---------LTPRQICDKYFAIHREVYEWFEIDFDYFG--RTST- 376 (1175)
Q Consensus 324 ~~~G~D~~G~~ie~~a~~~---------------g---------~~p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~- 376 (1175)
|++|||+||+||+.+|++. | .+|.+++++|.+.+++++++||+++||.+ .|+|
T Consensus 76 ~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~ 155 (967)
T 1wz2_A 76 FPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSL 155 (967)
T ss_dssp CCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTT
T ss_pred CCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCC
Confidence 9999999999999887642 3 35778899999999999999999999976 5999
Q ss_pred -HHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceeccc----------------------------------
Q psy7266 377 -PQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGV---------------------------------- 421 (1175)
Q Consensus 377 -~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~---------------------------------- 421 (1175)
|.|.+.+||+|.+|+++|+||++.++++|||.|+|+|+|++|+..
T Consensus 156 np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl 235 (967)
T 1wz2_A 156 FPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETV 235 (967)
T ss_dssp SHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGG
T ss_pred ChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHh
Confidence 999999999999999999999999999999999999999876310
Q ss_pred --------CCCc------------------------------------------------------c-------------
Q psy7266 422 --------CPKC------------------------------------------------------R------------- 426 (1175)
Q Consensus 422 --------cP~c------------------------------------------------------~------------- 426 (1175)
+|.| +
T Consensus 236 ~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~ 315 (967)
T 1wz2_A 236 YGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDP 315 (967)
T ss_dssp GGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCS
T ss_pred hhheEEEECCCCcEEEEEecCCCcceeeehHHHHHHHHHhhccCcEEEEEEEchhhcCCEEECCCCCCceEEEecccccC
Confidence 0221 1
Q ss_pred --------------ccCCC---------------C--------------------------Ccccc--------------
Q psy7266 427 --------------YEDAR---------------G--------------------------DQCDG-------------- 437 (1175)
Q Consensus 427 --------------~~d~~---------------G--------------------------~~c~~-------------- 437 (1175)
.+|.. | +.|+.
T Consensus 316 ~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~ 395 (967)
T 1wz2_A 316 DNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQ 395 (967)
T ss_dssp SSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHH
T ss_pred CCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHH
Confidence 11110 1 00111
Q ss_pred ----------------cCCcc----------------------cccccc-CCcccCCCCccEEe-ecccccccch--hHH
Q psy7266 438 ----------------CGQLI----------------------NAIELI-QPRCKQCSQAPTVK-SSTQLFLELP--KIE 475 (1175)
Q Consensus 438 ----------------~g~~~----------------------~~~el~-~~~c~r~~~~~~~~-~~~qwfl~l~--~~~ 475 (1175)
||.+. ...++. .|+|+|||++++++ .++||||+++ .++
T Consensus 396 a~~~~y~~~~~~G~~~~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k 475 (967)
T 1wz2_A 396 ATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWK 475 (967)
T ss_dssp HTTHHHHHHHHSCBCCSSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHH
T ss_pred HHHHhhhccccCceEeccCcCCcCHHHHHHHHHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHH
Confidence 11110 001222 59999999999999 6999999998 499
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCC---CC----C---------------------
Q psy7266 476 DKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPG---FE----N--------------------- 527 (1175)
Q Consensus 476 ~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~---~e----~--------------------- 527 (1175)
+.+++++++.. .+|+..++.+.+|+ ++++|||||||++||+|||++. ++ .
T Consensus 476 ~~~l~~~~~~~-~~P~~~~~~~~~~l-~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~g 553 (967)
T 1wz2_A 476 EKARKALERMK-ILPETRRAQFEAII-DWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGK 553 (967)
T ss_dssp HHHHHHHTTSC-EESSTTHHHHHHHH-HSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhccE-eeCccccchHHHhh-hcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhcC
Confidence 99999998763 45777899999999 6999999999999999999531 11 1
Q ss_pred --------ce--EEecC--------------c-----------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHH
Q psy7266 528 --------KY--SLSSS--------------P-----------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATL 572 (1175)
Q Consensus 528 --------~v--vWfds--------------~-----------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l 572 (1175)
++ +||.+ + +|++|||.| +|++|+||++||+.++..+.
T Consensus 554 ~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~D--------i~~~G~D~i~~H~~~~~~~~ 625 (967)
T 1wz2_A 554 LDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLD--------WRCSGKDLIPNHLTFFIFNH 625 (967)
T ss_dssp CCGGGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCS--------EEEEEGGGTTTHHHHHHHHH
T ss_pred CChHHcCcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCCe--------EEeeeeCcchhHHHHHHHHH
Confidence 11 34322 1 346789998 99999999999999985544
Q ss_pred HHhCCCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHH
Q psy7266 573 VAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLN 652 (1175)
Q Consensus 573 ~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~ 652 (1175)
.+.....++|+++++||||+.+|+|||||+||+|+|.++++. ||+|++||||++.++.++|++|+++.+... .++++
T Consensus 626 ~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--~~~l~ 702 (967)
T 1wz2_A 626 VAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKL--RKQIE 702 (967)
T ss_dssp HHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHT-TCHHHHHHHHHHHCCTTCCEEECHHHHHHH--HHHHH
T ss_pred HHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHH-hChHHHHHHHHhCCCCCCCcccCHHHHHHH--HHHHH
Confidence 443212356799999999999999999999999999999996 999999999998899999999999987543 33455
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhcCccc
Q psy7266 653 NLGNFINRALSFIEKNYGSTIP-EISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYI-LNISRYCNQYMQTQQPWV 730 (1175)
Q Consensus 653 ~l~n~~~r~~~~~~~~~~~~~p-~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i-~~~~~~~n~yi~~~kpw~ 730 (1175)
+++|++.++ .+...| ...+...|+|++++++.+++.+.++|++|+|+.|+..+ +.+.+.+|+|++.+++..
T Consensus 703 rl~n~~~~~-------~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~~ 775 (967)
T 1wz2_A 703 RFYELISQF-------AEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRD 775 (967)
T ss_dssp HHHHHHHHH-------HSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHH-------hcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 555544333 211111 12356789999999999999999999999999999976 688899999999887521
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCC
Q psy7266 731 LFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 731 l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~ 778 (1175)
+ .++..++.++++.+++||+|||||+||+||++|+.+
T Consensus 776 --------~---~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~~ 812 (967)
T 1wz2_A 776 --------D---EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE 812 (967)
T ss_dssp --------C---HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSCC
T ss_pred --------H---HHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCC
Confidence 1 134567789999999999999999999999999853
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-78 Score=757.95 Aligned_cols=470 Identities=17% Similarity=0.307 Sum_probs=364.5
Q ss_pred ccccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHc
Q psy7266 240 LSSKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLV 318 (1175)
Q Consensus 240 ~~~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~ 318 (1175)
...|++.|++.++|.+ |++|++.+.|+... ..++++|+|+++||||||.|||||+++.++ +|+++||+||+
T Consensus 18 ~~~m~~~y~~~~iE~kw~~~W~~~~~f~~~~-------~~~~~~~~v~~~~PypnG~lHiGHa~~~~~-~DvlaRy~rm~ 89 (880)
T 4arc_A 18 GSHMQEQYRPEEIESKVQLHWDEKRTFEVTE-------DESKEKYYCLSMLPYPSGRLHMGHVRNYTI-GDVIARYQRML 89 (880)
T ss_dssp ---CCSSCCHHHHHHHHHHHHHHTTTTCCCC-------CTTSCEEEEEECCCCCCSSCCHHHHHHHHH-HHHHHHHHHHT
T ss_pred cccccccCChHHHHHHHHHHHHhcCCcccCC-------cCCCCCEEEEcCCCCCCCCcchhhhHHHHH-HHHHHHHHHHc
Confidence 4567889999999999 99999999997643 236789999999999999999999999888 99999999999
Q ss_pred CCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhcccccccc--CCCCCHHHHHHHHHHHHHHHHcCCE
Q psy7266 319 NRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYF--GRTSTPQQTEIVQHLFDRVHKAGFT 396 (1175)
Q Consensus 319 G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~~~~v~~~f~~L~~~G~i 396 (1175)
||+|+|++|||+||+||+..|.+.|++|.++++++.+.|++++++||+++||. ++|+++.|.+.++++|.+|+++|+|
T Consensus 90 G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGli 169 (880)
T 4arc_A 90 GKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLV 169 (880)
T ss_dssp TCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCE
T ss_pred CCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCE
Confidence 99999999999999999999999999999999999999999999999999975 4799999999999999999999999
Q ss_pred EeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHH
Q psy7266 397 SSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIED 476 (1175)
Q Consensus 397 y~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~ 476 (1175)
|++.++++||+.|+|+|+|.+|. +++|+|||.+++.+..+||||++++|++
T Consensus 170 Y~~~~~v~wcp~~~t~La~~ev~-----------------------------~g~~~~~g~~ve~~~~~~~f~~i~~y~~ 220 (880)
T 4arc_A 170 YKKTSAVNWCPNDQTVLANEQVI-----------------------------DGCCWRCDTKVERKEIPQWFIKITAYAD 220 (880)
T ss_dssp EEEEECC-----------------------------------------------------------CEEEEEECGGGGHH
T ss_pred EEeceeEeecCCcCCEecchhhh-----------------------------cCcCcCCCCccEEEEccceEEeechhHH
Confidence 99999999999999999999874 4569999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHh-------------------------------------------------------
Q psy7266 477 KLQSWVSETSDQWSSNARVICKAWL------------------------------------------------------- 501 (1175)
Q Consensus 477 ~l~~~~~~~~~~~~~~~~~~~~~wl------------------------------------------------------- 501 (1175)
+|+++++... .||.+++.++++|+
T Consensus 221 ~Ll~~l~~~~-~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~ 299 (880)
T 4arc_A 221 ELLNDLDKLD-HWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELA 299 (880)
T ss_dssp HHHHHGGGCT-TSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHH
T ss_pred HHHHHHhhcc-cccHHHHHHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHH
Confidence 9999887653 35544443333221
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 502 -------------------------------------------------------------------------------- 501 (1175)
Q Consensus 502 -------------------------------------------------------------------------------- 501 (1175)
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~v 379 (880)
T 4arc_A 300 AFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPV 379 (880)
T ss_dssp HHHTC----------------CEEEEEEEEECTTTCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHhccCchhhhhccceeeccccCcEEecCCCCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEe
Confidence
Q ss_pred --------------------------------------------h----------cCCCcEeeeccCCCCcccCCCCCC-
Q psy7266 502 --------------------------------------------K----------DGLKPRCITRDLKWGIPVPLPGFE- 526 (1175)
Q Consensus 502 --------------------------------------------~----------~~l~dw~ISR~~~WG~piP~~~~e- 526 (1175)
+ -+|+||||||||+||+|||+|+|+
T Consensus 380 i~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~ 459 (880)
T 4arc_A 380 ILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLED 459 (880)
T ss_dssp BCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETT
T ss_pred eccCcccccccccccccCCceeecCcccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccceeeeeeccCCcceEEEECC
Confidence 0 037899999999999999998752
Q ss_pred -----------------------------------------------Cce--EEecCc-------------------ccc
Q psy7266 527 -----------------------------------------------NKY--SLSSSP-------------------SLV 538 (1175)
Q Consensus 527 -----------------------------------------------~~v--vWfds~-------------------~~~ 538 (1175)
.+| |||||+ .++
T Consensus 460 cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~ 539 (880)
T 4arc_A 460 GTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAAN 539 (880)
T ss_dssp SCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHH
T ss_pred CCeEeCChHHCccccchhcccCCCCCchHhCccceeeccCCCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHh
Confidence 134 899987 123
Q ss_pred ccCCCCCCCCcceEEEEeeccccchhH---hHHHHHHHHhCC--CcccCeEEEeeceee--------cCCC---------
Q psy7266 539 QFLPTATPQSKITLYQFMAKDNVPFHS---IMFPATLVAAGD--QYTKVNHIMATEYLN--------YEDG--------- 596 (1175)
Q Consensus 539 ~~wp~~~~~~~v~~~~~~GkD~i~fh~---~~~pa~l~~~~~--~~~~p~~i~~~g~l~--------~~G~--------- 596 (1175)
+|||.| +++.|.||+..|. -+|+.+|...|+ ...|++++++||||+ .+|+
T Consensus 540 ~~~PvD--------~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v 611 (880)
T 4arc_A 540 YWLPVD--------IYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDA 611 (880)
T ss_dssp HHCSEE--------EEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTC
T ss_pred ccCCce--------EeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHh
Confidence 467776 8999999987774 467888887765 346789999999994 5666
Q ss_pred ---------------------------cccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHH
Q psy7266 597 ---------------------------KFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSE 649 (1175)
Q Consensus 597 ---------------------------KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~ 649 (1175)
|||||+||+|+|.++++. ||+|++|||+++.+++++|++|+++.+... ..
T Consensus 612 ~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIek-YGADalRl~ll~~~~~~~dl~~s~~~ie~a--~r 688 (880)
T 4arc_A 612 IVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVER-YGADTVRLFMMFASPADMTLEWQESGVEGA--NR 688 (880)
T ss_dssp EEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHH--HH
T ss_pred ccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHH-cCchHHHHHHHhcCCCCCCcccCHHHHHHH--HH
Confidence 999999999999999997 999999999999889999999999998754 23
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 650 LLNNLGNFINRALSFIEKNYG-STIPEISPIHEDFLLLALINRELSAYYSVLD-KAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 650 l~~~l~n~~~r~~~~~~~~~~-~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
++++++|++.+... ... ...+...++..|+|++++++.+++.+.++|+ +|+|+.|+..||+|++.+|.|.
T Consensus 689 fl~rlwn~~~~~~~----~~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~---- 760 (880)
T 4arc_A 689 FLKRVWKLVYEHTA----KGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP---- 760 (880)
T ss_dssp HHHHHHHHHHHHHH----TCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSC----
T ss_pred HHHHHHHHHHHHHh----cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhh----
Confidence 55666665543221 111 1111234577899999999999999999998 8999999999999987776541
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCC
Q psy7266 728 PWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 728 pw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~ 778 (1175)
++ +. . ...++.++++.+++||+|||||+||+||+.|+.+
T Consensus 761 -----~~---~~-~---~~~~l~~~l~~ll~LLaPf~PhiaEElW~~Lg~~ 799 (880)
T 4arc_A 761 -----TD---GE-Q---DRALMQEALLAVVRMLNPFTPHICFTLWQELKGE 799 (880)
T ss_dssp -----CS---SH-H---HHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred -----cc---ch-H---HHHHHHHHHHHHHHHHhhccHHHHHHHHHHcCCC
Confidence 11 11 1 2345688999999999999999999999999864
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-77 Score=762.64 Aligned_cols=494 Identities=18% Similarity=0.263 Sum_probs=394.7
Q ss_pred CCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcc
Q psy7266 245 KDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTL 323 (1175)
Q Consensus 245 ~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~ 323 (1175)
..|++.++|++ |++|++.++|+.... ...++++|+|++|||||||.|||||+++.++ +|+++||+||+||+|+
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~-----~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~-~D~i~R~~rm~G~~V~ 75 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIR-----DKPKEKKFYITVAFPYLSGHLHVGHARTYTI-PDVIARFKRMQGYNVL 75 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGG-----GSCGGGEEEEEECCCBTTSCCBHHHHHHHHH-HHHHHHHHHHHTCEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCch-----hcCCCCcEEEEeCCCCCCCCCccccchhHHH-HHHHHHHHHcCCCccC
Confidence 46899999999 999999999976532 1234678999999999999999999999887 9999999999999999
Q ss_pred cccccCCcchHHHHHHHH------------------------cCCCchhhHHHHHHHHHHHHhhccccccccC--CCCC-
Q psy7266 324 YVSGTDEYGTATETKALE------------------------EGLTPRQICDKYFAIHREVYEWFEIDFDYFG--RTST- 376 (1175)
Q Consensus 324 ~~~G~D~~G~~ie~~a~~------------------------~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~--~T~~- 376 (1175)
|++|||+||+||+..|++ .+.+|.++++++.+.+++++++|||++||.+ +|++
T Consensus 76 ~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~ 155 (810)
T 1wkb_A 76 FPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSL 155 (810)
T ss_dssp CCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTT
T ss_pred cCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCC
Confidence 999999999999987653 1356788999999999999999999999854 5999
Q ss_pred -HHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceeccc----------------------------------
Q psy7266 377 -PQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGV---------------------------------- 421 (1175)
Q Consensus 377 -~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~---------------------------------- 421 (1175)
+.|.+.++++|.+|+++|+||++.++++|||.|+|+|+|++|+..
T Consensus 156 ~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl 235 (810)
T 1wkb_A 156 FPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETV 235 (810)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGG
T ss_pred chHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHh
Confidence 999999999999999999999999999999999999999977420
Q ss_pred --------CCCcccc-----C-----------------------------------------------------------
Q psy7266 422 --------CPKCRYE-----D----------------------------------------------------------- 429 (1175)
Q Consensus 422 --------cP~c~~~-----d----------------------------------------------------------- 429 (1175)
+|.|.|- +
T Consensus 236 ~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~ 315 (810)
T 1wkb_A 236 YGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDP 315 (810)
T ss_dssp GGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCT
T ss_pred hhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEEEecCcccC
Confidence 0222110 0
Q ss_pred CCC-------------------------CcccccCCc---------c--------------------------c------
Q psy7266 430 ARG-------------------------DQCDGCGQL---------I--------------------------N------ 443 (1175)
Q Consensus 430 ~~G-------------------------~~c~~~g~~---------~--------------------------~------ 443 (1175)
.+| .+|..||.. + +
T Consensus 316 ~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~ 395 (810)
T 1wkb_A 316 DNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQ 395 (810)
T ss_dssp TSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHH
T ss_pred CCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhh
Confidence 000 112333311 0 0
Q ss_pred --------------------------------------------ccccc-CCcccCCCCccEEe-ecccccccchh--HH
Q psy7266 444 --------------------------------------------AIELI-QPRCKQCSQAPTVK-SSTQLFLELPK--IE 475 (1175)
Q Consensus 444 --------------------------------------------~~el~-~~~c~r~~~~~~~~-~~~qwfl~l~~--~~ 475 (1175)
..++. .|+|+|||++++++ .++||||++++ ++
T Consensus 396 ~~~~~~~~~~~~G~~~~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~ 475 (810)
T 1wkb_A 396 ATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWK 475 (810)
T ss_dssp HHHHHHHHHHHSCEECSGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHH
T ss_pred hhhhhhhccccCceEeccCcCCeEHHHhHHHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHH
Confidence 00111 58999999999999 69999999985 99
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCC---CC---Cc-e-EEecC-------------
Q psy7266 476 DKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPG---FE---NK-Y-SLSSS------------- 534 (1175)
Q Consensus 476 ~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~---~e---~~-v-vWfds------------- 534 (1175)
+.+++++++.. .+|...++.+.+|+ ++++|||||||++||+|||++. ++ +. + ||+++
T Consensus 476 ~~~l~~~~~~~-~~P~~~~~~~~~~l-~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~ 553 (810)
T 1wkb_A 476 EKARKALERMK-ILPETRRAQFEAII-DWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGK 553 (810)
T ss_dssp HHHHHHHHTSE-EESGGGHHHHHHHH-HHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhcccE-EECcchhchHHHHh-hcccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcC
Confidence 99999998763 45777899999999 5999999999999999999521 11 11 1 34321
Q ss_pred -------------------------------c-----------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHH
Q psy7266 535 -------------------------------P-----------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATL 572 (1175)
Q Consensus 535 -------------------------------~-----------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l 572 (1175)
+ .+++|||.| +|++|+||++||+.++.++.
T Consensus 554 ~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~D--------i~~~G~D~~~~H~~~~~~~~ 625 (810)
T 1wkb_A 554 LDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLD--------WRCSGKDLIPNHLTFFIFNH 625 (810)
T ss_dssp CCGGGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCS--------EEEEEGGGTTTHHHHHHHHH
T ss_pred CCHHHcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCce--------EEeecccccccHHHHHHHHH
Confidence 1 245678998 99999999999999985443
Q ss_pred HHhCCC-cccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHH
Q psy7266 573 VAAGDQ-YTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELL 651 (1175)
Q Consensus 573 ~~~~~~-~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~ 651 (1175)
.+. .+ .++|+++++||||+.+|+|||||+||+|+|.++++. ||+|++||||++.++.++|++|+++.+..
T Consensus 626 ~~~-~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~------- 696 (810)
T 1wkb_A 626 VAI-FREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGK------- 696 (810)
T ss_dssp HHH-SCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHH-HCHHHHHHHHHHHCCTTCCEEECHHHHHH-------
T ss_pred HHH-cCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHH-cChHHHHHHHHhcCCCCCCcccCHHHHHH-------
Confidence 333 23 356899999999999999999999999999999996 99999999999889999999999997753
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhcCcc
Q psy7266 652 NNLGNFINRALSFIEKNYGSTIPE-ISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYI-LNISRYCNQYMQTQQPW 729 (1175)
Q Consensus 652 ~~l~n~~~r~~~~~~~~~~~~~p~-~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i-~~~~~~~n~yi~~~kpw 729 (1175)
.+|+++|+..++........|. ......|+|++++++.+++.+.++|++|+|+.|+..+ +.+++.+|+|++.+++.
T Consensus 697 --~~~~l~rl~n~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~~ 774 (810)
T 1wkb_A 697 --LRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGR 774 (810)
T ss_dssp --HHHHHHHHHHHHHHHHTCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTC
T ss_pred --HHHHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444444444443332221221 2356789999999999999999999999999999876 68899999999988752
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcC
Q psy7266 730 VLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLG 776 (1175)
Q Consensus 730 ~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~ 776 (1175)
+ + .+++.++.++++.+++||+|||||+||+||++||
T Consensus 775 ----~----~---~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 775 ----D----D---EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp ----C----C---HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred ----c----h---hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 1 1 1125677899999999999999999999999986
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-77 Score=755.28 Aligned_cols=464 Identities=18% Similarity=0.292 Sum_probs=385.4
Q ss_pred CCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCccc
Q psy7266 246 DVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLY 324 (1175)
Q Consensus 246 ~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~ 324 (1175)
+|++.++|++ |++|++.+.|+... +..++++|||+++||||||.|||||+++.++ +|+++||+||+||+|+|
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~------~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~-~Dvl~Ry~rm~G~~V~~ 75 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKD------LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVLH 75 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCS------CCC---EEEEEECCCCCSSCCBHHHHHHHHH-HHHHHHHHHHHTCEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCc------ccCCCCCEEEECCCCCCCCCcchhhhHHHHH-HHHHHHHHHhcCCceEe
Confidence 7999999999 99999999997643 1235678999999999999999999999887 99999999999999999
Q ss_pred ccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc--cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEE
Q psy7266 325 VSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY--FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVE 402 (1175)
Q Consensus 325 ~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~ 402 (1175)
++|||+||+||+..|++.|++|.++++++.+.|++++++|||++|| +++|+++.|.+.++++|.+|+++|+||++.++
T Consensus 76 ~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~ 155 (878)
T 2v0c_A 76 PMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGL 155 (878)
T ss_dssp CCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEccee
Confidence 9999999999999999999999999999999999999999999997 45799999999999999999999999999999
Q ss_pred EeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccC-CCCccEEeecccccccchhHHHHHHHH
Q psy7266 403 QLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQ-CSQAPTVKSSTQLFLELPKIEDKLQSW 481 (1175)
Q Consensus 403 ~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r-~~~~~~~~~~~qwfl~l~~~~~~l~~~ 481 (1175)
++||+.|+|+|+|++|+ +++|++ ||.+++.+..+||||++++++++|+++
T Consensus 156 v~w~p~~~t~La~~ev~-----------------------------~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~ 206 (878)
T 2v0c_A 156 VNWCPKCQTVLANEQVV-----------------------------EGRCWRHEDTPVEKRELEQWYLRITAYAERLLKD 206 (878)
T ss_dssp EEEETTTTEEECGGGEE-----------------------------TTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHT
T ss_pred EEEeCCCCCCcCHHHHh-----------------------------cCCCcccCCCceEEEecceeeEecchhHHHHHHH
Confidence 99999999999999984 346889 999999999999999999999998877
Q ss_pred HHhcCCCCCchHHHHHHHH-------------------------------------------------------------
Q psy7266 482 VSETSDQWSSNARVICKAW------------------------------------------------------------- 500 (1175)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~w------------------------------------------------------------- 500 (1175)
++... ||+..++++.+|
T Consensus 207 l~~~~--~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~ 284 (878)
T 2v0c_A 207 LEGLN--WPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYV 284 (878)
T ss_dssp TTTCB--SCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHH
T ss_pred hhhcC--CCHHHHHHHHHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHH
Confidence 65431 444333333333
Q ss_pred --------------------------------------------------------------------------------
Q psy7266 501 -------------------------------------------------------------------------------- 500 (1175)
Q Consensus 501 -------------------------------------------------------------------------------- 500 (1175)
T Consensus 285 ~~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~ 364 (878)
T 2v0c_A 285 EAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIER 364 (878)
T ss_dssp HHHHTSCHHHHHCSSSCCCCEEEEEEEECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEEC
T ss_pred HHHhhhhhhhhhhccceeeeEecCcEEECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCC
Confidence
Q ss_pred ----------------------------------------hhc----------CCCcEeeeccCCCCcccCCCCCC----
Q psy7266 501 ----------------------------------------LKD----------GLKPRCITRDLKWGIPVPLPGFE---- 526 (1175)
Q Consensus 501 ----------------------------------------l~~----------~l~dw~ISR~~~WG~piP~~~~e---- 526 (1175)
|++ +|+||||||||+||+|||+|+|+
T Consensus 365 ~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~~~ 444 (878)
T 2v0c_A 365 PGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGV 444 (878)
T ss_dssp SSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCEEEETTTEE
T ss_pred CCccccccccccccCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccEEEECCCCe
Confidence 211 57899999999999999986531
Q ss_pred --------------------------------------------------Cce--EEecCc-------------------
Q psy7266 527 --------------------------------------------------NKY--SLSSSP------------------- 535 (1175)
Q Consensus 527 --------------------------------------------------~~v--vWfds~------------------- 535 (1175)
.+| |||||+
T Consensus 445 v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~ 524 (878)
T 2v0c_A 445 VPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPE 524 (878)
T ss_dssp EECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHH
T ss_pred EecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhhhccCccccccccCHH
Confidence 145 899887
Q ss_pred cccccCCCCCCCCcceEEEEeeccccchhHh---HHHHHHHHhCC--CcccCeEEEeeceeec-----------------
Q psy7266 536 SLVQFLPTATPQSKITLYQFMAKDNVPFHSI---MFPATLVAAGD--QYTKVNHIMATEYLNY----------------- 593 (1175)
Q Consensus 536 ~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~---~~pa~l~~~~~--~~~~p~~i~~~g~l~~----------------- 593 (1175)
.+++|||.| +++.|.||...|.+ +|+.+|.+.|+ +..|++++++||||+-
T Consensus 525 ~~~~~~P~D--------~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~ 596 (878)
T 2v0c_A 525 KANAWMPVD--------QYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLP 596 (878)
T ss_dssp HHHHHCSBS--------EEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECC
T ss_pred HHccCCCCe--------EEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceecc
Confidence 123567887 89999999866544 57888877763 3577899999999953
Q ss_pred ------------------------------CC-------CcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCcc
Q psy7266 594 ------------------------------ED-------GKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTS 636 (1175)
Q Consensus 594 ------------------------------~G-------~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~ 636 (1175)
+| +|||||+||+|+|.++++. ||+|++||||++.++.++|++
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~-yGADalRl~ll~~~~~~~D~~ 675 (878)
T 2v0c_A 597 EPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKE-QGADIARITILFAAPPENEMV 675 (878)
T ss_dssp HHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHH-SCHHHHHHHHHHHSCTTSCEE
T ss_pred ccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHH-cCccHHHHHHhccCCCCCCce
Confidence 88 8999999999999999997 999999999999899999999
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q psy7266 637 FSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNIS 716 (1175)
Q Consensus 637 f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~ 716 (1175)
|+++.+... .++++.++|++.....-+. .....++...+...|+|++++++.+++.+.++|++|+|+.|+..|++|+
T Consensus 676 fs~~~v~~~--~~~l~Rl~n~~~~~~~~~~-~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~ 752 (878)
T 2v0c_A 676 WTEEGVQGA--WRFLNRIYRRVAEDREALL-ETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL 752 (878)
T ss_dssp ECHHHHHHH--HHHHHHHHHHHHHHHHHHH-TCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eCHHHHHHH--HHHHHHHHHHHHHHHhccc-ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999998753 2355555555433222110 0011122224577899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcC
Q psy7266 717 RYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLG 776 (1175)
Q Consensus 717 ~~~n~yi~~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~ 776 (1175)
+.+|.|.+... . . .++.++++.+++||+|||||+||+||++|+
T Consensus 753 ~~l~k~~~~~~---------~-----~---~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg 795 (878)
T 2v0c_A 753 NALYEYRKDRP---------V-----T---PVYRTAIRYYLQMLFPFAPHLAEELWHWFW 795 (878)
T ss_dssp HHHHHHHHHCC---------S-----C---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHC
T ss_pred HHHhhhcccch---------h-----H---HHHHHHHHHHHHHHcccchHHHHHHHHHcC
Confidence 89999865310 0 1 245889999999999999999999999998
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=442.30 Aligned_cols=329 Identities=14% Similarity=0.106 Sum_probs=238.1
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVY 361 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~ 361 (1175)
++.++.+.|+|||++||||+|++++ +|+++||+|++||+|.|++|+|+||.+|+.+|++.|.+|.++++++.+.|++++
T Consensus 39 ~v~~y~~gPt~yg~~HiGHar~~v~-~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~ 117 (414)
T 3c8z_A 39 TATMYVCGITPYDATHLGHAATYLT-FDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDM 117 (414)
T ss_dssp EEEEEECCCCTTSCCBHHHHHHHHH-HHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CceEEeCCCcCCCCcCccccHHHHH-HHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3445555778899999999998777 999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccc-ccccCCCCCHHHHHHHHHHHHHHHHcCCEEece----EEEeeeCCCCcccccceecccCCCccccCCCCCccc
Q psy7266 362 EWFEID-FDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSAS----VEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCD 436 (1175)
Q Consensus 362 ~~lgi~-~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~----~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~ 436 (1175)
++|||+ +|++.+|++ |.+.++++|.+|+++|+||+++ ..++|+... + .
T Consensus 118 ~~Lgi~~~d~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~---------------------~----~ 170 (414)
T 3c8z_A 118 AALRVLPPHDYVAATD--AIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADA---------------------T----A 170 (414)
T ss_dssp HHTTCCCCSEEEEGGG--CHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTS---------------------S----T
T ss_pred HHcCCCCCcceecccc--hHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchh---------------------h----h
Confidence 999999 999988875 8899999999999999999987 444443331 0 0
Q ss_pred ccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCC
Q psy7266 437 GCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKW 516 (1175)
Q Consensus 437 ~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~W 516 (1175)
.||+ .|+. + .+.++.++.+....... ..+.+..|+. .|
T Consensus 171 ~~g~-------------l~~~------------~----~~~~~~~~~~~~~~~~~--------~~k~~~~D~~-----lW 208 (414)
T 3c8z_A 171 QFGY-------------ESGY------------D----RDTMLTLFAERGGDPDR--------PGKSDQLDAL-----LW 208 (414)
T ss_dssp TTTT-------------TTCC------------C----HHHHHHHHHHTTCCTTC--------TTCSSTTCEE-----EE
T ss_pred hhHh-------------hcCC------------C----HHHHHHHHhhccccccc--------cccCCcchhh-----hc
Confidence 1111 0110 0 12233322111000000 0011233433 37
Q ss_pred CcccCCCCCCCceEEecCc--------------cccccC--CCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcc
Q psy7266 517 GIPVPLPGFENKYSLSSSP--------------SLVQFL--PTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYT 580 (1175)
Q Consensus 517 G~piP~~~~e~~vvWfds~--------------~~~~~w--p~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~ 580 (1175)
|++.|... +| ||+ .+.+|| |.+ +|++|+||++||+.+|+++++++. +..
T Consensus 209 k~~~pg~~-----~W-da~~g~g~pgWhiec~a~~~~~~g~~~d--------i~~~G~D~~~~H~~~~~a~~~a~~-g~~ 273 (414)
T 3c8z_A 209 RAERPGEP-----SW-PSPFGRGRPGWHVECSAIALTRIGTGLD--------IQGGGSDLIFPHHEYSAAHAESVT-GER 273 (414)
T ss_dssp EECCTTSC-----CB-CCTTCSEEECHHHHHHHHHHHHTCSCEE--------EEEEEGGGTTTHHHHHHHHHHHHH-CCS
T ss_pred CCCCCCCC-----CC-CCCCCCCCCCccchhHHHHHHhcCCCce--------EEEeccccccHHHHHHHHHHHHhc-CCC
Confidence 77777432 35 554 123455 333 899999999999999999999872 344
Q ss_pred cCeEEEee-ceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHH
Q psy7266 581 KVNHIMAT-EYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFIN 659 (1175)
Q Consensus 581 ~p~~i~~~-g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~ 659 (1175)
+|.++++| |||+.+|+|||||+||+|+|.++++.|||+|++||||++ +++.+|++|+++.+.+..| .+++++|+++
T Consensus 274 ~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~--~l~~l~n~~~ 350 (414)
T 3c8z_A 274 RFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS-GHYREDRFWSNEVLDEANA--RLARWRSATA 350 (414)
T ss_dssp CSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHT-SCTTSCBCCCHHHHHHHHH--HHHHHHHHHT
T ss_pred CcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEe-cCcCCCCCcCHHHHHHHHH--HHHHHHHHHH
Confidence 66666666 899999999999999999999999977999999999999 8899999999999987655 3578888765
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Q psy7266 660 RALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQ 721 (1175)
Q Consensus 660 r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~ 721 (1175)
|+ ++ + .++.+.+.+.++| ++|+++.|+..|++|++.+|.
T Consensus 351 ~~--------~~--~-------------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 351 LP--------EA--P-------------DATDVIARVRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp SS--------CB--S-------------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred hc--------cc--h-------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 43 11 1 1246678899999 799999999999999999998
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=437.95 Aligned_cols=348 Identities=16% Similarity=0.121 Sum_probs=260.1
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
+-+++|| .|+|+|++||||+|++++ +|+++||+|++||+|.|++|+|++|.+|+..|++.|.++.++|++|.+.|.+
T Consensus 22 ~v~~yv~--gPt~y~~~HiGHar~~v~-~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~ 98 (461)
T 1li5_A 22 EVGMYVC--GITVYDLCHIGHGRTFVA-FDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHK 98 (461)
T ss_dssp EEEEEEC--CCBSSSCCBHHHHHHHHH-HHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CeeEEEc--CCcCCCCCcccccHHHHH-HHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3445555 556669999999998776 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccc-cccCCCCCHHHHHHHHHHHHHHHHcCCEEec-eEEEeeeCCCCcccccceecccCCCccccCCCCCcccc
Q psy7266 360 VYEWFEIDF-DYFGRTSTPQQTEIVQHLFDRVHKAGFTSSA-SVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 360 ~~~~lgi~~-D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~ 437 (1175)
++++|||++ |++.+|++ |.+.+++++.+|+++|++|.+ +..++||+.+-. .+| +.
T Consensus 99 ~~~~LgI~~~d~~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~------------------~yg---~l 155 (461)
T 1li5_A 99 DFDALNILRPDMEPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDP------------------TYG---VL 155 (461)
T ss_dssp HHHHTTCCCCSBCCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCT------------------TTT---TT
T ss_pred HHHHcCCCCCcccccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEeccccc------------------ccc---cc
Confidence 999999998 88888875 999999999999999999999 889999988510 122 23
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCC
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWG 517 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG 517 (1175)
||+.+. ++. +|..++.. ..++.+..+. -|.. -++-.+++...||
T Consensus 156 sg~~~~--~l~------~g~rv~~~------------------~~k~~p~Df~--------lwk~--~~~g~~~w~s~WG 199 (461)
T 1li5_A 156 SRQDLD--QLQ------AGARVDVV------------------DDKRNPMDFV--------LWKM--SKEGEPSWPSPWG 199 (461)
T ss_dssp TTC------------------------------------------CCSTTCEE--------EEEE--CCTTSCCBCCTTC
T ss_pred cCCCHH--Hhh------cCCcccch------------------hcccCccceE--------EEcc--CCCCCCcccCCCC
Confidence 443211 111 11111100 0011110000 0110 0111245677899
Q ss_pred cccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCc
Q psy7266 518 IPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGK 597 (1175)
Q Consensus 518 ~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~K 597 (1175)
++.|.|+.++.+ .+.+||... ..+|++|+|+++||+.+||++++++. +.++++.+++||||+.+|+|
T Consensus 200 ~g~PgWhiecsa------m~~~~lg~~------~dih~gG~Dl~fpH~~~~~aq~~a~~-g~~~~~~~~h~g~v~~~G~K 266 (461)
T 1li5_A 200 AGRPGWHIECSA------MNCKQLGNH------FDIHGGGSDLMFPHHENEIAQSTCAH-DGQYVNYWMHSGMVMVDREK 266 (461)
T ss_dssp SEEECSSHHHHH------HHHHHHCSS------EEEEECBGGGTTTHHHHHHHHHHHHS-SSCCEEEECCBCCEEETTBC
T ss_pred CcCCCccchhHH------HHHHHhCCC------ceEEeccCccCchHHHHHHHHHHHhc-CCCCCcEEEEeeEEEECCeE
Confidence 999977522111 234555332 12899999999999999999998872 35677889999999999999
Q ss_pred ccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy7266 598 FSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEIS 677 (1175)
Q Consensus 598 MSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~ 677 (1175)
||||+||+|+|.|+++. ||+|++||||++ .++.+|++|+++.+.+..|. ++.++|++.++ ++.++
T Consensus 267 MSKS~GN~v~~~dll~~-~g~dalR~~ll~-~~~~~~~~fs~~~l~~~~~~--l~rl~n~~~~~--------~~~~~--- 331 (461)
T 1li5_A 267 MSKSLGNFFTVRDVLKY-YDAETVRYFLMS-GHYRSQLNYSEENLKQARAA--LERLYTALRGT--------DKTVA--- 331 (461)
T ss_dssp CCGGGTCCCBHHHHHTT-SCHHHHHHHHHS-SCTTSCEEECHHHHHHHHHH--HHHHHHHHTTC--------CTTSC---
T ss_pred ccccCCCccChhHHhhh-CCHHHHHHHHHc-CCcCCCCCCCHHHHHHHHHH--HHHHHHHHHHh--------hcCCC---
Confidence 99999999999999996 999999999998 68899999999998764332 34444444321 21122
Q ss_pred CChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q psy7266 678 PIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQT 725 (1175)
Q Consensus 678 ~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~ 725 (1175)
+ | .+..+...+.++| ++|+++.|+..|++|++.+|.|++.
T Consensus 332 --~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~ 372 (461)
T 1li5_A 332 --P-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE 372 (461)
T ss_dssp --C-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --H-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc
Confidence 1 2 3567788899999 9999999999999999999999975
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=429.19 Aligned_cols=359 Identities=16% Similarity=0.205 Sum_probs=235.7
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccc---------c-CCcchHHHHHHHHcCCCchhhHH
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSG---------T-DEYGTATETKALEEGLTPRQICD 351 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G---------~-D~~G~~ie~~a~~~g~~p~~~~~ 351 (1175)
++-++.++|+|+|.+||||++++++ .|+++||+|++||+|+|++| + |+||++|+.+|++.|++|.++++
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~-~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~ 120 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIF-GDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISE 120 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHH-HHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHH-HHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHH
Confidence 4445555677889999999998776 99999999999999999955 4 77799999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCC
Q psy7266 352 KYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDAR 431 (1175)
Q Consensus 352 ~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~ 431 (1175)
+|.+.|.+++++|||++|++..| .++|.+.++++|.+|+++|+||+.+..|+||+.+ | ..+
T Consensus 121 ~~~~~f~~d~~~Lgi~~d~~~~~-~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~--f----------------~~y 181 (501)
T 3sp1_A 121 FFTEAFFNDCRKLNIVYPDKVLV-ASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC--F----------------KSY 181 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCSEEEE-GGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG--C----------------TTT
T ss_pred HHHHHHHHHHHHcCCCCCCcccC-cchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc--c----------------CCc
Confidence 99999999999999999998754 5789999999999999999999999999999986 1 123
Q ss_pred CCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC-CcEee
Q psy7266 432 GDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGL-KPRCI 510 (1175)
Q Consensus 432 G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l-~dw~I 510 (1175)
|..+ |+-+. .+ ..+|..++... .++++..+. -|..... .+-.+
T Consensus 182 G~ls---~~~~~-~~------~~~g~r~~~~~------------------~K~~p~Df~--------lWk~~p~~~~~~~ 225 (501)
T 3sp1_A 182 GEMA---GIDLI-DK------DMTLPRVDVDK------------------FKRNKTDFV--------LWFTNSKFKDQEM 225 (501)
T ss_dssp TTTT---C------------------------------------------CCSSTTCEE--------EEEECCC-----C
T ss_pred cccC---CCChh-hh------hccCCccCccc------------------ccCCchhhH--------hcCCCCCCCCCCc
Confidence 3221 11110 00 01121111100 011110100 0110000 01112
Q ss_pred eccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeece
Q psy7266 511 TRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEY 590 (1175)
Q Consensus 511 SR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~ 590 (1175)
+....||...|.|+-|+.+ ...+||+.. .+ +|++|+|+++||+.+++|+..++. +.++.+.++++||
T Consensus 226 ~W~spwG~GrPGWhiEcsa------m~~~~lg~~---~D---IH~gG~DLifpHheneiAqs~a~~-g~~~~~~w~H~g~ 292 (501)
T 3sp1_A 226 KWDSPWGFGYPSWHLECAA------MNLEYFKDA---LD---IHLGGVDHIGVHHINEIAIAECFL-NKKWCDVFVHGEF 292 (501)
T ss_dssp CBCCTTCSEEECHHHHHHH------HHHHHTTTC---CC---EEEEEGGGTTTHHHHHHHHHHHHH-TSCCCSEEEEECC
T ss_pred eecCCCCCCCCCchHHHHH------HHHHHcCCC---ce---EEeeccccccchHHHHHHHHHHcc-CCCCCeEEEEeee
Confidence 2245689989977532221 345678653 12 899999999999999999999875 2344566666699
Q ss_pred eecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHh
Q psy7266 591 LNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNS--ELLNNLGNFINRALSFIEKN 668 (1175)
Q Consensus 591 l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~--~l~~~l~n~~~r~~~~~~~~ 668 (1175)
|+.+|+|||||+||+|+|.++++.|||+|++||||++. ++.+|++|+++.+.+..+. +|++.++|++.|+.......
T Consensus 293 v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~-~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~ 371 (501)
T 3sp1_A 293 LIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS-HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNT 371 (501)
T ss_dssp EECC----------CCCHHHHHHTTCCHHHHHHHHHTS-CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred EeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc-cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999679999999999986 8889999999999887776 67888888887754433221
Q ss_pred c--CCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Q psy7266 669 Y--GSTIPEISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCN 720 (1175)
Q Consensus 669 ~--~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n 720 (1175)
. .+. ... ...+..+...+.++| ++|+...|+..|+++++.+|
T Consensus 372 ~~~~~~----~~~------~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~~~ 416 (501)
T 3sp1_A 372 LNKDLK----NFG------FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN 416 (501)
T ss_dssp HHSCTT----SCS------SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHCSS
T ss_pred cccccc----chh------hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence 0 110 000 113455677889999 59999999999999987764
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=397.88 Aligned_cols=346 Identities=15% Similarity=0.144 Sum_probs=253.7
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
.+++.++.+.|||+|.+||||++++++ .|+++||+|++||+|.|++|+|+||.+|+.+|++.|++|.+++++|.+.|.+
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~-~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~ 101 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWII-FDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHE 101 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHH-HHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHH-HHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456777778899999999999998776 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccC-CCCCHHHHHHHHHHHHHHHHcCCEEec-eEEEeeeCCCCcccccceecccCCCccccCCCCCcccc
Q psy7266 360 VYEWFEIDFDYFG-RTSTPQQTEIVQHLFDRVHKAGFTSSA-SVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 360 ~~~~lgi~~D~~~-~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~ 437 (1175)
++++|||++|++. +++ +|.+.++++|.+|+++|++|+. +..|+||+.+-. .+|..+.
T Consensus 102 d~~~LgI~~d~~~praT--e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~------------------~yg~Ls~- 160 (462)
T 3tqo_A 102 DEKALRVLSPDQEPRAT--QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFK------------------DYGKLSH- 160 (462)
T ss_dssp HHHHHTCCCCSBCCBGG--GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCT------------------TTTTTTT-
T ss_pred HHHHcCCCCCccccChh--hHHHHHHHHHHHHHHCCCEEEecCCcEEecccccc------------------ccccccC-
Confidence 9999999998876 554 6999999999999999999998 689999998621 1222111
Q ss_pred cCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCC---CCchHHHHHHHHhhcCCCcEeeeccC
Q psy7266 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQ---WSSNARVICKAWLKDGLKPRCITRDL 514 (1175)
Q Consensus 438 ~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~---~~~~~~~~~~~wl~~~l~dw~ISR~~ 514 (1175)
+-. .++. .|..+.... .++++.. |... +.+-.-| +.
T Consensus 161 --~~~--~~~~------~g~r~~~~~------------------~K~~p~DF~LWK~~---------k~~ep~W----~s 199 (462)
T 3tqo_A 161 --RHL--DELQ------AGARVEVSD------------------SKRDPLDFVLWKKA---------KPGEPKW----DS 199 (462)
T ss_dssp --CSC--C------------------------------------CCSSTTCEEEEEEC---------CTTSCCB----CC
T ss_pred --CCh--HHhh------ccCcccccc------------------ccCCccccceeeec---------CCCCCcc----cC
Confidence 000 0000 011000000 0011000 2110 0122234 45
Q ss_pred CCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecC
Q psy7266 515 KWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYE 594 (1175)
Q Consensus 515 ~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~ 594 (1175)
.||-..|.|+.|+.+ ...++.... -.+|..|.|++++|+....+...++. +.++.+.++++|+|+.+
T Consensus 200 pwG~GrPGWHiEcsa------m~~~~lG~~------~dih~gG~Dl~FpHheneiaqs~a~~-g~p~~~~w~H~g~v~~~ 266 (462)
T 3tqo_A 200 PWGEGRPGWHIECSA------MSSSILGQP------FDIHGGGLDLKFPHHENEIAQSEAGE-EKPFVKLWMHAGLLEIN 266 (462)
T ss_dssp TTCSEEECHHHHHHH------HHHHHHCSS------EEEEEEEGGGTTTHHHHHHHHHHHHH-SSCCEEEEEEECCEEET
T ss_pred CCCCCCCCCceehHH------HHHHhcCCC------eEEEccccccccHHHHhHHHHHHHHc-CCCcceEEEEccEEecC
Confidence 699999988744322 111222111 11899999999999999888877654 34566888888999999
Q ss_pred CCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy7266 595 DGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIP 674 (1175)
Q Consensus 595 G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p 674 (1175)
|+|||||+||+|+|.|+++. ||+|++||||++ .++.+|++|+++.+.+. ...++.++|++.++ ...
T Consensus 267 G~KMSKSlGN~i~~~dll~~-~g~dalR~~lls-~~yr~~l~fs~~~l~~a--~~~l~rl~~~~~~~--------~~~-- 332 (462)
T 3tqo_A 267 KEKMSKSLGNIISIREALKE-SDVEVLRYFLLS-GHYRNPLSYSKENLENG--RLALERFYLALRGL--------PVV-- 332 (462)
T ss_dssp TEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHH-SCTTSCEEECHHHHHHH--HHHHHHHHHHHTTC--------CC---
T ss_pred CcCccccCCCcccHHHHHhh-cChHHhhhhhcc-CCCCCCcCcCHHHHHHH--HHHHHHHHHHHHHh--------hhc--
Confidence 99999999999999999996 999999999998 47789999999998754 23344454433221 110
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q psy7266 675 EISPIHEDFLLLALINRELSAYYSVL-DKAKLRDGIRYILNISRYCNQYMQT 725 (1175)
Q Consensus 675 ~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~yi~~ 725 (1175)
. . + .+..+...+.++| ++|+...|+..|+++++.+|.++..
T Consensus 333 --~--~-~-----~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~ 374 (462)
T 3tqo_A 333 --N--H-E-----KTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDN 374 (462)
T ss_dssp ---------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred --c--c-h-----hHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcc
Confidence 0 0 0 1345667889999 5999999999999999999998753
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=361.07 Aligned_cols=370 Identities=14% Similarity=0.131 Sum_probs=254.8
Q ss_pred cEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHH------------------------
Q psy7266 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATET------------------------ 337 (1175)
Q Consensus 282 ~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~------------------------ 337 (1175)
+++|+...|||||++||||+|++++ +|+++||+|+.||+|.++..++|+|..+-.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~ii-gD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~ 182 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIAL-GDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGR 182 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHH-HHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHH-HHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHH
Confidence 7899999999999999999999887 999999999999999998666666533211
Q ss_pred ----------------------HHHHcCCCchhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCC
Q psy7266 338 ----------------------KALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGF 395 (1175)
Q Consensus 338 ----------------------~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~ 395 (1175)
.+.+.|. .+++++.+.+.|+++|++|||+||.|.+|++..|...+++++.+|.++|+
T Consensus 183 ~y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 183 AYVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCC
Confidence 1134454 38899999999999999999999999888877779999999999999999
Q ss_pred EEe---ceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccch
Q psy7266 396 TSS---ASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELP 472 (1175)
Q Consensus 396 iy~---~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~ 472 (1175)
+|+ +.+.+.||..+..+ |+. .++...+..+++... -||..
T Consensus 262 ~y~~~~g~~~G~~~~~~~~~-------------------g~~----------~~l~~~vi~ksdG~~------~Y~~~-- 304 (592)
T 1iq0_A 262 VFRPREGKYAGALVMDASPV-------------------IPG----------LEDPFFVLLRSNGTA------TYYAK-- 304 (592)
T ss_dssp EECCSSSTTTTCEEEECTTT-------------------SCS----------CSCCEEEEECTTSCB------CHHHH--
T ss_pred cccCcccCcCCCEEEechhc-------------------CCC----------CCCCceEEEecCCce------EEecc--
Confidence 994 23334445443222 110 000000111222111 12221
Q ss_pred hHHHHHHH--HHH--hcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCC
Q psy7266 473 KIEDKLQS--WVS--ETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQS 548 (1175)
Q Consensus 473 ~~~~~l~~--~~~--~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~ 548 (1175)
++.-.+.+ .++ .....|... | +...|. .||+++|..+
T Consensus 305 D~a~~~~Kl~l~~~~~~~~~~~~p-------~---~r~~w~-----~~g~~~~~~~------------------------ 345 (592)
T 1iq0_A 305 DIAFQFWKMGILEGLRFRPYENPY-------Y---PGLRTS-----APEGEAYTPK------------------------ 345 (592)
T ss_dssp HHHHHHHHTTSSCCCEEEECCCSS-------C---TTCEEE-----EEEEEECCCC------------------------
T ss_pred hHHHHHHHhhhhhhhhhhhhhcCc-------c---hhhccc-----ccCcccCCCC------------------------
Confidence 11111100 000 000011110 1 122342 4788888432
Q ss_pred cceEEEEeeccccchhHhHHHHHHHHhCCCccc-C--eEEEeeceeecCCCcccccCCCccCchhhhhcC----------
Q psy7266 549 KITLYQFMAKDNVPFHSIMFPATLVAAGDQYTK-V--NHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTG---------- 615 (1175)
Q Consensus 549 ~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~-p--~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~---------- 615 (1175)
.-.++++.|.||...... ..+++.++| +++ + -.++.||||+.+|+|||||+||+|++.|+++.+
T Consensus 346 ~~~~iyV~g~~h~~~~~~-~~~~~~alG--~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~ 422 (592)
T 1iq0_A 346 AEETINVVDVRQSHPQAL-VRAALALAG--YPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEE 422 (592)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHTT--CHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeccHHHHHHH-HHHHHHHcC--CCCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHh
Confidence 113467778776642222 224555555 444 2 246778999999999999999999999999853
Q ss_pred --------------CCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCh
Q psy7266 616 --------------LPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGSTIPEIS-PIH 680 (1175)
Q Consensus 616 --------------~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~p~~~-~~~ 680 (1175)
+|+|++|||+++..+ .+|++|+++.+.+..| +....+.+.+.|+.+++.+...+..+... ..+
T Consensus 423 ~~~~~~~~e~~a~~vg~~aiRyf~L~~~~-~~~~~Fd~d~~~~~~~-~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~ 500 (592)
T 1iq0_A 423 KNPDHPDKEEAARMVALGAIRFSMVKTEP-KKQIDFRYQEALSFEG-DTGPYVQYAHARAHSILRKAGEWGAPDLSQATP 500 (592)
T ss_dssp HCTTCSCHHHHHHHHHHHHHHHHHHHSCT-TSCEEECHHHHHCSSS-SSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCH
T ss_pred hCCCCCcHHHHHHhhcHHHHHHHHHhcCC-CCCCeecHHHHHHHhc-cchHHHHHHHHHHHHHHHhhcccCCCccCCCCH
Confidence 999999999999654 6999999999987655 35567777788999999887643332111 245
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc-----ccccCC
Q psy7266 681 EDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP-----WVLFKG 734 (1175)
Q Consensus 681 ~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp-----w~l~k~ 734 (1175)
.+..++..+.++...+.+++++++++.++++|+++++.+|.|++.++| |++..+
T Consensus 501 ~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~~ 559 (592)
T 1iq0_A 501 YERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAP 559 (592)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCCC
Confidence 678899999999999999999999999999999999999999999977 777653
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=355.32 Aligned_cols=371 Identities=13% Similarity=0.119 Sum_probs=265.9
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHH----------------------
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATE---------------------- 336 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie---------------------- 336 (1175)
..++++|....|||||++||||+|++++ +|+++|++|..||+|.++.+++|+|+.+.
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~ii-gD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~ 195 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAIL-GDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRE 195 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHH-HHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHH-HHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcc
Confidence 4568999999999999999999999888 99999999999999999998888877643
Q ss_pred -----------------HHHHHcC--------------------CCchhhHHHHHHHHHHHHhhccccccccCCCCCHHH
Q psy7266 337 -----------------TKALEEG--------------------LTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQ 379 (1175)
Q Consensus 337 -----------------~~a~~~g--------------------~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~ 379 (1175)
..+++.+ ...+++|+.+.+.|+++|++|||++|.|.++++..|
T Consensus 196 ~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~ 275 (629)
T 2zue_A 196 RGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVR 275 (629)
T ss_dssp HTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHH
T ss_pred cccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCcccc
Confidence 2222222 333788999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHcCCEE---eceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCC
Q psy7266 380 TEIVQHLFDRVHKAGFTS---SASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCS 456 (1175)
Q Consensus 380 ~~~v~~~f~~L~~~G~iy---~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~ 456 (1175)
...++.++.+|.++|++| .+...+.||..|+.+-.+..+ +
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~-------------------------------------~ 318 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKN-------------------------------------P 318 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSC-------------------------------------C
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCcccc-------------------------------------C
Confidence 999999999999999999 345567777776544211100 0
Q ss_pred CccEEeecc--cccccchhHHHHHHH--HHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEe
Q psy7266 457 QAPTVKSST--QLFLELPKIEDKLQS--WVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLS 532 (1175)
Q Consensus 457 ~~~~~~~~~--qwfl~l~~~~~~l~~--~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWf 532 (1175)
..++.+... .||.. +++-.+.+ ++. + .+. .++..+|.++| ..||+++|...
T Consensus 319 ~~v~~ksdG~~~Y~~~--Diay~~~K~~ll~--~-~fr----------~~~~~~~~~~~--~~wG~~~Pg~~-------- 373 (629)
T 2zue_A 319 ILVLRRSDGTATYTGK--DIAYHLWKFGKID--V-DLL----------YKEWDSTTWTT--APDGKSMPNKF-------- 373 (629)
T ss_dssp EEEEECTTSCBCHHHH--HHHHHHHHTTCSC--C-CCE----------EEECSSSCEEE--EEEEEECTTSS--------
T ss_pred ceEEEecCCccccchh--hHHHHHHHhhccc--c-ccc----------CCccccccccc--CCCCCCCCCcc--------
Confidence 011222111 22222 11111100 010 0 000 10111222244 37999999421
Q ss_pred cCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCccc-Ce--EEEeeceeecCCCcccccCC--CccC
Q psy7266 533 SSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTK-VN--HIMATEYLNYEDGKFSKSRG--TGVF 607 (1175)
Q Consensus 533 ds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~-p~--~i~~~g~l~~~G~KMSKS~G--N~v~ 607 (1175)
... -.++++.|.||-- |.--..+.+.++| +.+ ++ .++.||||+.+|+|||||+| |+|+
T Consensus 374 --------~~~------d~~IyV~g~~q~~-~~~~l~~~l~~lG--~~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~ 436 (629)
T 2zue_A 374 --------GNA------NIVINVIGAEQKH-PQLAIKYALQLLG--FEDAAANLYHLAYEHVERPEGKFSGRKGTWVGFT 436 (629)
T ss_dssp --------CCC------SEEEEEEEGGGHH-HHHHHHHHHHHTT--CHHHHHTEEEEEECCEEBTTBCCCTTTTTTTTCB
T ss_pred --------CCC------CcEEEEEeCcHhh-HHHHHHHHHHHcC--CCCCCCeEEEEEeeeEEcCCCcccCCCCCCCeee
Confidence 011 1347788877652 2222235556665 444 32 46778999999999999999 9999
Q ss_pred chhhhhcC--------------------------CCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHH
Q psy7266 608 GNNAKDTG--------------------------LPADIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRA 661 (1175)
Q Consensus 608 ~~d~i~~~--------------------------~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~ 661 (1175)
++|+++.. +|.|++|||+++.. ..+|++|+|+.+.+..+ +..+.+.+.+.|+
T Consensus 437 l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~-~~~~~~Fd~d~~~~~~~-~t~~ylqYa~aRi 514 (629)
T 2zue_A 437 VDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYS-PDKKIIFRWEDVLNFEG-ESAPYIQYAHARC 514 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSC-TTSCEECCHHHHSCCSS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcC-CCCCCeecHHHHHHHhc-CchHHHHHHHHHH
Confidence 99999842 99999999999965 47999999999987544 4777888889999
Q ss_pred HHHHHHhcCCCC-------C---CC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy7266 662 LSFIEKNYGSTI-------P---EI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWV 730 (1175)
Q Consensus 662 ~~~~~~~~~~~~-------p---~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~ 730 (1175)
.+++.+.....+ + .. ...+.+..|+..+.++...+.+++++++++.++.++++++..+|.|++.+ |+
T Consensus 515 ~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~fn~fy~~~--~v 592 (629)
T 2zue_A 515 SSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDH--PV 592 (629)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHC--CS
T ss_pred HHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhc--cc
Confidence 999987532221 0 11 12567788999999999999999999999999999999999999999988 45
Q ss_pred ccC
Q psy7266 731 LFK 733 (1175)
Q Consensus 731 l~k 733 (1175)
+..
T Consensus 593 l~~ 595 (629)
T 2zue_A 593 LKA 595 (629)
T ss_dssp TTS
T ss_pred cCC
Confidence 544
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=303.62 Aligned_cols=336 Identities=15% Similarity=0.172 Sum_probs=236.2
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH-------H--cCCC---c
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL-------E--EGLT---P 346 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~-------~--~g~~---p 346 (1175)
.+++++|....|||+|++||||+|++++ +|+++|++|+.||+|+......|+|+.+-..+. + .|.+ |
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~-gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p 106 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVF-GDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYP 106 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHH-HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHH-HHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999999998 999999999999999999999999998854321 1 1221 1
Q ss_pred h---------h-------------------------hHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHH
Q psy7266 347 R---------Q-------------------------ICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHK 392 (1175)
Q Consensus 347 ~---------~-------------------------~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~ 392 (1175)
. + .++...+.+++++++|||.||.|...++ -|. .+..++..|.+
T Consensus 107 ~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess-~~~-~~~~vv~~L~~ 184 (464)
T 3fnr_A 107 EQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERS-YYD-ALNATLESLKE 184 (464)
T ss_dssp SSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGG-GST-THHHHHHHHHH
T ss_pred hhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHH-HHH-HHHHHHHHHHH
Confidence 1 0 1112235688899999999997754322 244 88999999999
Q ss_pred cCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccch
Q psy7266 393 AGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELP 472 (1175)
Q Consensus 393 ~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~ 472 (1175)
+|++|+.+...+.... .+|+. .+.+++
T Consensus 185 ~g~~~e~dGa~~~~~~---------------------~~g~~----------------------~~~vl~---------- 211 (464)
T 3fnr_A 185 HKGIYEQEGKIWLASS---------------------QKGDE----------------------KDRVII---------- 211 (464)
T ss_dssp TTCEEEETTEEEECGG---------------------GGTCS----------------------SCEEEE----------
T ss_pred CCCEEEeCCeEEEEec---------------------ccCCC----------------------CceEEE----------
Confidence 9999997655433211 11110 011111
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceE
Q psy7266 473 KIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITL 552 (1175)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~ 552 (1175)
+.++.+....+.+....-+- .| | .+ .+
T Consensus 212 -----------ksDG~~~Y~t~DiA~~~~r~-------~~----~-------------------------~d------~~ 238 (464)
T 3fnr_A 212 -----------REDGRGTYLAADIVYHKDKM-------SR----G-------------------------YG------KC 238 (464)
T ss_dssp -----------CTTSCBCHHHHHHHHHHHHH-------TS----S-------------------------CS------EE
T ss_pred -----------eCCCceehhhHHHHHHHHHH-------Hc----C-------------------------CC------eE
Confidence 11122344444443322210 00 0 11 34
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCe-EEEeeceeec--CCC--cccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVN-HIMATEYLNY--EDG--KFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~-~i~~~g~l~~--~G~--KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
+++.|.||......++ +++..+| +.+++ .++.+|+|++ +|+ |||||+||+|+|.|+++. +|+|++|||+++
T Consensus 239 Iyv~G~dq~~~f~~l~-~~l~~lG--~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~-~g~dalRy~~l~ 314 (464)
T 3fnr_A 239 INIWGADHHGYIPRMK-AAMEFLG--FDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDE-IGSDALRYIFLS 314 (464)
T ss_dssp EEEEEGGGGGGHHHHH-HHHHTTT--CCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHH-HCHHHHHHHTTS
T ss_pred EEEecCcHHHHHHHHH-HHHHHcC--CCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhh-ccHHHHHHHHHh
Confidence 8899999874333333 4555555 44555 6788999854 775 999999999999999997 999999999998
Q ss_pred cCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCC--CCC---CCCChhhHHHHHHHHHHHHHHHHHHHh
Q psy7266 628 VRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYGST--IPE---ISPIHEDFLLLALINRELSAYYSVLDK 702 (1175)
Q Consensus 628 ~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~--~p~---~~~~~~d~~l~~~l~~~~~~~~~~~e~ 702 (1175)
. ...+|++|+++.+.+..|.+.+.-+.+...|+.+++.+..... ++. ..+...|++++..+.++.+.+.+++++
T Consensus 315 ~-~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~ 393 (464)
T 3fnr_A 315 K-KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALNLKAVLNDAFEA 393 (464)
T ss_dssp S-CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred c-CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHHHHHHHHHHHHc
Confidence 6 4578999999999876554333233445679999988764321 111 134556999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 703 AKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 703 ~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
++++.++++|++|+..+|.|++.++-
T Consensus 394 ~ep~~i~~yL~~La~~~n~fY~~~~v 419 (464)
T 3fnr_A 394 RALQKIPDYLKNLAANFHKFYNENKV 419 (464)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999998864
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-29 Score=300.04 Aligned_cols=271 Identities=12% Similarity=0.066 Sum_probs=173.2
Q ss_pred EEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcc--hHH---HHHHHHc--CCCc---------
Q psy7266 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYG--TAT---ETKALEE--GLTP--------- 346 (1175)
Q Consensus 283 ~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G--~~i---e~~a~~~--g~~p--------- 346 (1175)
.|++.+.|||||+|||||+|++++ +|+++||+|++|++|.|++++||+| .+| ...+.++ |.++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~-~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~ 99 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFT-AYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGC 99 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHH-HHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHH-HHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhh
Confidence 466666799999999999998776 9999999999999999999999999 555 3444555 8887
Q ss_pred -hhhHHHHHHHHHHHHhhccccccccCCCCCHHHHH-HHHHHHHHHHHcC-CEEeceEE-------EeeeCCCCcccccc
Q psy7266 347 -RQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTE-IVQHLFDRVHKAG-FTSSASVE-------QLHCAQCDRFLADR 416 (1175)
Q Consensus 347 -~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~-~v~~~f~~L~~~G-~iy~~~~~-------~~~c~~~~~~l~d~ 416 (1175)
.++++++.+.|.++|++|||++|.+ ++++. |.+ .+++++.+|.++| +||..... ..||. + ++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~-~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~- 173 (523)
T 1irx_A 100 HESYAEHFMRKFEEEVEKLGIEVDLL-YASEL-YKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPA- 173 (523)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCCCEEE-EHHHH-HHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSE-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEE-echhh-ccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceec-
Confidence 8899999999999999999999988 65533 777 8999999999999 66632100 12222 0 1110
Q ss_pred eecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHH
Q psy7266 417 FVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVI 496 (1175)
Q Consensus 417 ~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~ 496 (1175)
...|..||+.....+.. .+.+ +.|.+ +.
T Consensus 174 ---------------~~~~~~~~~~~~~~~~~------~~~~--------~~f~~-----------~~------------ 201 (523)
T 1irx_A 174 ---------------MVYCPEHRREAEIIEWD------GGWK--------VKYKC-----------PE------------ 201 (523)
T ss_dssp ---------------EEECTTTCCEECEEEEC------SSSC--------EEECC-----------SS------------
T ss_pred ---------------cccchhhCCcccccccC------CCCc--------eeeee-----------cC------------
Confidence 01244444432111100 0001 11111 00
Q ss_pred HHHHhhcCCCcEeeeccCCC-CcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchh----HhHHHHH
Q psy7266 497 CKAWLKDGLKPRCITRDLKW-GIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFH----SIMFPAT 571 (1175)
Q Consensus 497 ~~~wl~~~l~dw~ISR~~~W-G~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh----~~~~pa~ 571 (1175)
|...| .-.| |...|.|+.+ | +...+++..+ ++++|+||+.+| +..++++
T Consensus 202 -------g~~~~----~d~~~G~g~~~w~~d----~---~~~~~~l~~~--------vd~~G~Dh~~~h~s~~~~~~i~~ 255 (523)
T 1irx_A 202 -------GHEGW----VDIRSGNVKLRWRVD----W---PMRWSHFGVD--------FEPAGKDHLVAGSSYDTGKEIIK 255 (523)
T ss_dssp -------SCCCE----ECTTSSCEEECHHHH----H---HHHHHHSCCC--------BCCEEHHHHSTTSHHHHHHHHHH
T ss_pred -------CCccc----cCCcCCCCCCCCCcc----h---HhhHHHcCCC--------CcCCCcCccCCCcchhhHHHHHH
Confidence 10011 1112 2222221100 0 0000123333 558999999999 4555553
Q ss_pred HHHhCCCcccCeEEEeeceeecC--CCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHH-HHHH
Q psy7266 572 LVAAGDQYTKVNHIMATEYLNYE--DGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQ-DLAT 644 (1175)
Q Consensus 572 l~~~~~~~~~p~~i~~~g~l~~~--G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~-~~~~ 644 (1175)
.++| +.+| .+++||||+.+ |+|||||+||+|++.++++. |++|++||||++. ..++|++|+++ .+.+
T Consensus 256 -~alG--~~~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-~~pdalR~~l~~~-~~~~~~~fs~~~~l~~ 325 (523)
T 1irx_A 256 -EVYG--KEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLVRFIYARH-RPNKEIKIDLGLGILN 325 (523)
T ss_dssp -HHHC--CCCC-BCCEECCEEESCC---------CCCCHHHHHTT-SCHHHHHHHHHSS-CTTSCEEECCSTTHHH
T ss_pred -HHhC--CCCC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHH-cCHHHHHHHHHhc-CCCCCceeCcchhHHH
Confidence 4554 5556 78888999877 89999999999999999997 9999999999985 55789999999 7764
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=274.24 Aligned_cols=334 Identities=12% Similarity=0.152 Sum_probs=234.2
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHH--------------------
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETK-------------------- 338 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~-------------------- 338 (1175)
..++++|....|||+|++||||+|++++ +|+++|+++..||+|.++..++|+|+.+...
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~ii-GD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~ 219 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTII-GGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 219 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHH-HHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHH-HHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHH
Confidence 4568999999999999999999999888 9999999999999999999999988775221
Q ss_pred ----------------------------HHH------cCCC-----chhhHHHHHHHHHHHHhhccccccccCCCCCHHH
Q psy7266 339 ----------------------------ALE------EGLT-----PRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQ 379 (1175)
Q Consensus 339 ----------------------------a~~------~g~~-----p~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~ 379 (1175)
|++ .|.+ .+++++.+.+.|++++++|||.||.|.++++ |
T Consensus 220 l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~--~ 297 (607)
T 1f7u_A 220 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQ--V 297 (607)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGG--C
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcch--h
Confidence 222 3433 3568888999999999999999998776654 4
Q ss_pred H-HHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCc
Q psy7266 380 T-EIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQA 458 (1175)
Q Consensus 380 ~-~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~ 458 (1175)
. ..+..++..|.++|++|+.+..+++... .+ |+.. .+
T Consensus 298 ~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~--~~-------------------g~~~---------------------d~ 335 (607)
T 1f7u_A 298 SKESMLKAIDLFKEKGLTHEDKGAVLIDLT--KF-------------------NKKL---------------------GK 335 (607)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETTEEEEEGG--GT-------------------CTTT---------------------CE
T ss_pred hhhHHHHHHHHHHhCCCEEEECCcEEEEec--cc-------------------CCCC---------------------Cc
Confidence 4 7889999999999999987655544222 11 1100 01
Q ss_pred cEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCcccc
Q psy7266 459 PTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLV 538 (1175)
Q Consensus 459 ~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~ 538 (1175)
.+.+.++ +.+....+.+....-+ ..+
T Consensus 336 ~v~~KsD---------------------G~~~Y~t~Dia~~~~k--~~~------------------------------- 361 (607)
T 1f7u_A 336 AIVQKSD---------------------GTTLYLTRDVGAAMDR--YEK------------------------------- 361 (607)
T ss_dssp EEEECTT---------------------SCCCHHHHHHHHHHHH--HHH-------------------------------
T ss_pred eeEeccC---------------------CCcCCCCCcHHHHHHH--Hhh-------------------------------
Confidence 1111111 1122222222111000 000
Q ss_pred ccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCc
Q psy7266 539 QFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPA 618 (1175)
Q Consensus 539 ~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~ga 618 (1175)
+..+ .++++.|.||.-....++ +++..+| +++++.+.+.+|..+. |||||+||+|+++|+++. ++.
T Consensus 362 --~~~d------~~IyV~g~~q~~~f~q~~-~~~~~lG--~~~~~~~~Hv~fg~v~--kMSkR~G~~v~L~dLlde-~~~ 427 (607)
T 1f7u_A 362 --YHFD------KMIYVIASQQDLHAAQFF-EILKQMG--FEWAKDLQHVNFGMVQ--GMSTRKGTVVFLDNILEE-TKE 427 (607)
T ss_dssp --HCCS------EEEEECCGGGHHHHHHHH-HHHHHTT--CGGGGGEEEECCCCEE--SCCGGGTCCCBHHHHHHH-HHH
T ss_pred --cCCC------cEEEEEcChHhhHHHHHH-HHHHHcC--CCcCcEEEEecccccc--cccCCCCCcccHHHHHHH-HHH
Confidence 0111 237788877653222222 4555555 4556666666664443 699999999999999986 522
Q ss_pred ----------------------------hhHHHHHHhcCCCCCCccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 619 ----------------------------DIFRFYLLYVRPENQDTSFSWQDLATKNNSELLNNLGNFINRALSFIEKNYG 670 (1175)
Q Consensus 619 ----------------------------DalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l~~~l~n~~~r~~~~~~~~~~ 670 (1175)
.++||++++ ....++++|+|+.+....+ +....+.+...|+.+++.+..
T Consensus 428 ~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls-~~~~s~~~Fd~d~~~~~~g-~t~pylqYa~aRi~SIlrka~- 504 (607)
T 1f7u_A 428 KMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQ-GKRINNYEFKWERMLSFEG-DTGPYLQYAHSRLRSVERNAS- 504 (607)
T ss_dssp HHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHS-SCTTCCEECCHHHHHCCSS-SSHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhc-cCCCCCcccCHHHHHHHhc-cchHHHHHHHHHHHHHHHHhc-
Confidence 489999998 5567899999999976543 333367777789999988752
Q ss_pred CCC----C--C-CCC-ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 671 STI----P--E-ISP-IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 671 ~~~----p--~-~~~-~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
+.. . . ..+ .+.++.|+..+.++...+.+++++++++..+.++++++..+|.|++.++-
T Consensus 505 ~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~~V 570 (607)
T 1f7u_A 505 GITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWV 570 (607)
T ss_dssp TSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 111 0 1 112 46678899999999999999999999999999999999999999999864
|
| >4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-26 Score=247.14 Aligned_cols=172 Identities=19% Similarity=0.242 Sum_probs=148.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++||++|.++||+|+.+.|++.+. .+||.|+||+|+++||.+|+||.||++||.
T Consensus 23 MKLy~~~~SP~~~rVr~~L~e~gi~~e~~~v~~~~~~~~~~~~nP~gkVPvL~~~dG~~l~ES~aI~~YL~~~~~~~~l~ 102 (225)
T 4glt_A 23 MKLLYSNTSPYARKVRVVAAEKRIDVDMVLVVLADPECPVADHNPLGKIPVLILPDGESLYDSRVIVEYLDHRTPVAHLI 102 (225)
T ss_dssp CEEEECSSCHHHHHHHHHHHHHTCCCEEEECCTTCSSSCGGGTCTTCCSCEEECTTSCEECSHHHHHHHHHTTCSSCCSS
T ss_pred ceEecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHhCCCCCCCEEEeCCCCEEeehHHHHHHHHHhCCccccC
Confidence 899999999999999999999999999999998763 278999999998889999999999999996
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CCC-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFD----NPK-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|.++.+++.+++|+.|....+.+.+..++. .+. ...+.+.+.|+.||++|. ++||+|+++|+|||+++
T Consensus 103 p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~ 182 (225)
T 4glt_A 103 PQDHTAKIAVRRWEALADGVTDAAVAAVMEGRRPEGMQDSAVIEKQLNKVERGLRRMDQDLEKRKWCVNESFSLADIAVG 182 (225)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCCHHHHHHHHHHHHHHHHHHHHHTTTCSSSSTTSCCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcccchHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcccHhHHHHH
Confidence 567789999999999999888887766553 111 123467888999999999 99999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
+.|.++............||+|.+|+++|.++|+|+++
T Consensus 183 ~~l~~~~~~~~~~~~~~~~P~l~~w~~r~~~rPs~k~t 220 (225)
T 4glt_A 183 CMLGYLELRYQHLDWKQQYPNLARHYAAMMKRASFKDT 220 (225)
T ss_dssp HHHHHHHHHCTTCCHHHHCHHHHHHHHHHHTCHHHHTT
T ss_pred HHHHHHHHhcCCCCccccCHHHHHHHHHHHCCHHHHHh
Confidence 99998754433333457899999999999999999875
|
| >3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-25 Score=237.43 Aligned_cols=172 Identities=22% Similarity=0.364 Sum_probs=148.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++|+++|+++|++|+.+.|++..++ +||.|+||+|+ +||.+|+||.||++||.
T Consensus 3 mkLY~~~~S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-d~g~~l~eS~aI~~YL~~~~~~~ 81 (216)
T 3vk9_A 3 IDLYYVPGSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLNPQHTVPTLV-DDGLSIWESRAIITYLVNKYAKG 81 (216)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEE-ETTEEECCHHHHHHHHHHHHCTT
T ss_pred EEEEeCCCChhHHHHHHHHHHcCCCCEEEEeCCCCCccCCHHHHHhCCCCccceEe-cCCceeechHHHHHHHHHhcCcc
Confidence 7999999999999999999999999999999986532 68999999996 79999999999999995
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CCC----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhH
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFD----NPK----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l 133 (1175)
|.++.+++.+++|+.|....+.+.+..++. .+. ...+.+.+.|+.||++|+ ++||+|+++|+|||++
T Consensus 82 ~~l~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~~ 161 (216)
T 3vk9_A 82 SSLYPEDPKARALVDQRLYFDIGTLYQRFSDYFYPQVFAGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSL 161 (216)
T ss_dssp CTTSCCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHTTTCSBTTBSSCCHHHHHH
T ss_pred cCCCCCCHHHHHHhhhhHHHHhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCHHHHHH
Confidence 567789999999999999888887766553 222 234568889999999999 9999999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhcC-HHHHHHHHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKL-PQVQKALKTW 176 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~-P~~~~~l~~~ 176 (1175)
++.+.++.... .....||+|.+|+++|.++ |+|+++.++-
T Consensus 162 ~~~l~~~~~~~---~~~~~~P~l~~w~~r~~a~~P~~~~a~~~g 202 (216)
T 3vk9_A 162 IASVSSLEASD---IDFKKYANVKRWYETVKSTAPGYQEANEKG 202 (216)
T ss_dssp HHHHHHGGGTT---CCGGGSHHHHHHHHHHHHHSTTHHHHTHHH
T ss_pred HHHHHHHHHcC---CCchhCHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999865332 3467899999999999875 9999987654
|
| >4gci_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 1.50A {Yersinia pestis} PDB: 4g9h_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-24 Score=228.72 Aligned_cols=171 Identities=20% Similarity=0.319 Sum_probs=146.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||++|.+ ++++||++|+++|++|+.+.|++... .+||.|+||+|+.+||.+|+||.||++||.
T Consensus 4 mkLY~~p~s-~s~rvri~L~e~gl~~e~~~vd~~~~~~~~~~~~~~~nP~g~vP~L~~d~~~~l~eS~aI~~YL~~~~~~ 82 (211)
T 4gci_A 4 MKLFYKPGA-CSLSPHIVLREAGLDFSIERVDLVTKKTETGADYLSINPKGQVPALVLDDGSLLTEGVAIVQYLADKVPD 82 (211)
T ss_dssp EEEEECTTS-TTHHHHHHHHHTTCCEEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEECHHHHHHHHHHHCGG
T ss_pred EEEEeCCCC-cHHHHHHHHHHhCCCCeEEEecCCCCcccCCHHHHHhCCCCCCCccccCCCCEEecCHHHHHHHHhcCCC
Confidence 689999864 69999999999999999999987431 278999999998888999999999999985
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|.++.+++.+++|+.+....+.+.+...+.... ...+.+.+.|+.||++|+ ++|++|+++|+|||+++
T Consensus 83 ~~ll~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~~~ 162 (211)
T 4gci_A 83 RHLIAPSGTLSRYHAIEWLNFIATELHKGFSPLFNPNTPDEYKTIVRERLDKQFSYVDSVLAEHDYLLGKKFSVADAYLF 162 (211)
T ss_dssp GCSSCCTTSHHHHHHHHHHHHHHHHTTGGGHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSSCCHHHHHHH
T ss_pred cccCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhccccchhhHhhhHHHHHHHHHHHHHHHhcCCccCCCCccHHHHHHH
Confidence 567789999999999999988887776654222 223467889999999999 99999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.+.++..... ....||+|.+|+++|.++|+|++++..
T Consensus 163 ~~l~~~~~~~~---~~~~~p~l~~w~~r~~~rPs~k~~l~~ 200 (211)
T 4gci_A 163 TVSRWANALNL---QIKERSHLDQYMARVAERPAVKAALAA 200 (211)
T ss_dssp HHHHHHHHTTC---CCSSCHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHcCC---CcccCHHHHHHHHHHHhCHHHHHHHHh
Confidence 99998754432 457899999999999999999998864
|
| >4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=231.45 Aligned_cols=174 Identities=16% Similarity=0.132 Sum_probs=146.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++||++|.++|++|+.+.|++.+.. +||.|+||+|+ +||.+|+||.||++||.
T Consensus 4 m~LY~~~~sP~~~rvr~~L~e~gi~~e~~~v~~~~~~~~~~~~nP~g~vPvL~-~~~~~l~ES~aI~~yL~~~~~~~~l~ 82 (210)
T 4hoj_A 4 MTLYSGITCPFSHRCRFVLYEKGMDFEIKDIDIYNKPEDLAVMNPYNQVPVLV-ERDLVLHESNIINEYIDERFPHPQLM 82 (210)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHCTTCCSCEEE-ETTEEEESHHHHHHHHHHHSCSSCSS
T ss_pred EEEecCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCCHHHHHHCCCCCCcEEE-ECCEEEeccHHHHHHHHHhccCCCCC
Confidence 7999999999999999999999999999999987632 79999999996 78999999999999986
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
|.++.+++.++.|+.+....+.+.+........ ...+.+.+.|+.||++|. ++||+|+++|+|||++++.+.+
T Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~l~~ 162 (210)
T 4hoj_A 83 PGDPVMRGRGRLVLYRMEKELFNHVQVLENPAAANKEQAKAREAIGNGLTMLSPSFSKSKYILGEDFSMIDVALAPLLWR 162 (210)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSCC---CCBTTBSSCCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHhHHHHHHHHHHHhccCCccCCCcchhhHHHHHHHHHH
Confidence 678889999999999998888877665543211 224567888999999999 9999999999999999999998
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTWT 177 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~~ 177 (1175)
+.... ......||+|.+|+++|.++|+|++++...+
T Consensus 163 ~~~~~--~~~~~~~p~l~~w~~r~~~rp~~~~~~~~~e 198 (210)
T 4hoj_A 163 LDHYD--VKLGKSAAPLLKYAERIFQREAFIEALTPAE 198 (210)
T ss_dssp TTTTT--CCCCGGGHHHHHHHHHHHTSHHHHHHCCHHH
T ss_pred HHHcC--CCccccCHHHHHHHHHHHCCHHHHHHCChHH
Confidence 64322 2345689999999999999999999886654
|
| >4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-24 Score=232.53 Aligned_cols=173 Identities=16% Similarity=0.232 Sum_probs=146.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
++||+++.||++++||++|+++|++|+.+.|++...+ +||.|+||+|+ +||.+|+||.||++||+
T Consensus 4 piLY~~~~Sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-d~~~~l~eS~aI~~YL~~~~~~~ 82 (228)
T 4hi7_A 4 PILYGIDASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLKKNPQHTVPLLE-DGDANIADSHAIMAYLVSKYGKD 82 (228)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEE-ETTEEEESHHHHHHHHHHHHCSS
T ss_pred eEEEECCCChHHHHHHHHHHHhCCCCEEEEecCCCcccCCHHHHHhCCCCceeeEE-ECCEEEechHHHHHHHHHhhccC
Confidence 3699999999999999999999999999999986532 68999999996 78899999999999985
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhc-----CCC-----CchHHHHHHHHHHHHHhc-CCcccCCCCCccch
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFD-----NPK-----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADI 131 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-----~g~-----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi 131 (1175)
|.++.+++.+++|+.|..+.+.+.....+. .+. ...+.+.+.|+.||++|+ ++||+|+++|+|||
T Consensus 83 ~~L~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi 162 (228)
T 4hi7_A 83 DSLYPKDLVKRALVDNRMYFESGVVFANALRSLAKMILFLGKTEVPQERIDAITEAYDFVEAFFKDQTYVAGNQLTIADF 162 (228)
T ss_dssp STTSCSSHHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHTSCCCEEEHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHH
T ss_pred CCCCchhHHHHHHhhchhhhhhhhhcchhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHH
Confidence 567889999999999998877665443322 222 224568889999999999 99999999999999
Q ss_pred hHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 132 CIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 132 ~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++++.+.++.... ......||+|.+|++||.++|+|++.....
T Consensus 163 ~l~~~l~~~~~~~--~~~~~~~P~l~~w~~r~~~rPa~~e~~~~~ 205 (228)
T 4hi7_A 163 SLISSISSLVAFV--PVDAAKYPKLSAWIKRLEQLPYYAENSTGA 205 (228)
T ss_dssp HHHHHHHHHTTTS--CCCTTTCHHHHHHHHHHTTSTTTHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCchhCHHHHHHHHHHHcCHHHHHhchhH
Confidence 9999998864333 245678999999999999999999987655
|
| >4gf0_A Glutathione S-transferase; GST, enzyme function initiative, EFI, structural genomics; HET: GSH; 1.75A {Sulfitobacter} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=230.16 Aligned_cols=171 Identities=14% Similarity=0.191 Sum_probs=144.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||++|. +++++||++|+++|++|+.+.|++...+ +||.|+||+|+.+||.+|+||.||++||.
T Consensus 4 ~kLY~~p~-s~s~~vr~~L~e~gl~ye~~~v~~~~~~~~~~~~l~~nP~g~vP~L~~d~g~~l~ES~aI~~YL~~~~~~~ 82 (215)
T 4gf0_A 4 LTLYFTPG-TISVAVAIAIEEAALPYQPVRVDFATAEQTKPDYLAINPKGRVPALRLEDDTILTETGALLDYVAAIAPKA 82 (215)
T ss_dssp EEEEECTT-STHHHHHHHHHHTTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEECTTSCEEECHHHHHHHHHHHCGGG
T ss_pred EEEEeCCC-CcHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHhCCCCCcceEEecCCcEEechHHHHHHHHHhCCCc
Confidence 68999885 5899999999999999999999986522 79999999998888999999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhhhhhhc---CC-C---------CchHHHHHHHHHHHHHhc-CCcccCCCCCcc
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSVLSFFD---NP-K---------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVA 129 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g-~---------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlA 129 (1175)
|.++.+++.+++|+.+..+.+.+.+...+. .. . ...+.+...++.||++|. ++|++|+++|+|
T Consensus 83 ~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~l~~~~~l~G~~~t~A 162 (215)
T 4gf0_A 83 GLVPTDPTAAAQMRSAMYYLASTMHVAHAHKMRGSRWAKQQSSFEDMTAQVPETMAACADFVESDILRGPYVLGEDFSLA 162 (215)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHTHHHHHHTTTCGGGTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSBTTBSSCCTH
T ss_pred ccCCCChHHhHHHHHhhhhhccccchhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhccCccccCCCCcHH
Confidence 678889999999999999888877655443 11 1 112356778899999999 999999999999
Q ss_pred chhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 130 DICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 130 Di~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
||++++.+.++.... .....||+|.+|+++|.++|+|+++.++
T Consensus 163 Di~~~~~l~~~~~~~---~~~~~~P~l~~w~~r~~~rPs~~~~~~~ 205 (215)
T 4gf0_A 163 DPYLFVVCNWLDGDG---VDTAAYPKITTFMQQMTARASVAAVKDK 205 (215)
T ss_dssp HHHHHHHHTTTTTTT---CCGGGCHHHHHHHHHHHTSHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC---CCcccCHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999998864332 3467899999999999999999988753
|
| >1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 PDB: 1a0f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-23 Score=217.09 Aligned_cols=171 Identities=24% Similarity=0.331 Sum_probs=145.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.|+ ++++|++|.++|++|+.+.+++.+. .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 1 ~~Ly~~~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~ 79 (201)
T 1n2a_A 1 MKLFYKPGAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_dssp CEEEECTTST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHHTCGG
T ss_pred CeeecCCCcc-hHHHHHHHHHcCCCCeeEEEeCCCccccCCHHHHhhCcCCCCCeEEecCCcEEecHHHHHHHHHHhCCC
Confidence 7999999985 9999999999999999999987532 278999999998789999999999999985
Q ss_pred ----CC-ChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 67 ----KF-DTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 ----p~-~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|. ++.+++.+++|+.|..+.+.+.+..++.... ...+.+.+.|+.||++|+ ++||+|+++|+|||+++
T Consensus 80 ~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~l~ 159 (201)
T 1n2a_A 80 RQLLAPVNSISRYKTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLF 159 (201)
T ss_dssp GCSSCCTTCHHHHHHHHHHHHHHHHTHHHHHHHHCSSSCGGGHHHHHHHHHHHHHHHHHHTTTSSCSSSSSCCHHHHHHH
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhccCceecCCCCCHHHHHHH
Confidence 44 6678999999999998888877665544221 123467889999999999 99999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.+.++.... .....||+|.+|+++|.++|.+++++..
T Consensus 160 ~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 197 (201)
T 1n2a_A 160 TVLRWAYAVK---LNLEGLEHIAAFMQRMAERPEVQDALSA 197 (201)
T ss_dssp HHHHHHHHTT---CCCTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHcC---CCccccHHHHHHHHHHHhCHHHHHHHHH
Confidence 9998865432 2357899999999999999999998764
|
| >2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia xenovorans} PDB: 2gdr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.3e-23 Score=217.33 Aligned_cols=171 Identities=23% Similarity=0.334 Sum_probs=144.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.|+ ++++|++|.++|++|+.+.+++.+. .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 1 ~~Ly~~~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~ 79 (203)
T 2dsa_A 1 MKLYYSPGAC-SLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPG 79 (203)
T ss_dssp CEEEECTTST-THHHHHHHHHHTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHHHCGG
T ss_pred CeeeecCCcc-hHHHHHHHHHcCCCCeEEEEeCCCCcccCCHHHHHhCCCCCCCEEEecCCcEEecHHHHHHHHHHhCCC
Confidence 7999999995 9999999999999999999987532 278999999998789999999999999985
Q ss_pred ----CC-ChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 67 ----KF-DTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 ----p~-~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|. ++.+++.+++|+.|..+.+.+.+..++..+. ...+.+.+.|+.||++|. ++||+|+++|+|||+++
T Consensus 80 ~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~ 159 (203)
T 2dsa_A 80 KQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLF 159 (203)
T ss_dssp GCSSCCTTSHHHHHHHHHHHHHHHHTHHHHGGGGCTTSCHHHHHHHHHHHHHHHHHHHHHTSSSSBTTBSSCCHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhccCCeecCCCccHHHHHHH
Confidence 55 6788999999999998888877665543221 123467889999999999 99999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.+.++.... .....||+|.+|+++|.++|.+++++..
T Consensus 160 ~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 197 (203)
T 2dsa_A 160 VVLGWSAYVN---IDLSPWPSLQAFQGRVGGREAVQSALRA 197 (203)
T ss_dssp HHHHGGGTTT---CCCTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHcC---CChhhChHHHHHHHHHHcCHHHHHHHHH
Confidence 9998764322 2357899999999999999999998764
|
| >3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-23 Score=227.60 Aligned_cols=176 Identities=19% Similarity=0.231 Sum_probs=148.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+||.|+||+|+.+||.+|+||.||++||.
T Consensus 3 ~~Ly~~~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~yL~~~~~~~~L~ 82 (226)
T 3tou_A 3 MKLIGSHASPYTRKVRVVLAEKKIDYQFVLEDVWNADTQIHQFNPLGKVPCLVMDDGGALFDSRVIAEYADTLSPVARLI 82 (226)
T ss_dssp CEEEECSSCHHHHHHHHHHHHTTCCCEEEECCTTSTTCCGGGTCTTCCSCEEECTTSCEECSHHHHHHHHHHSCSSCCCS
T ss_pred EEEecCCCCchHHHHHHHHHHcCCCcEEEecCccCCcHHHHHhCCCCCCCEEEeCCCCEeccHHHHHHHHHHhCCCCCCC
Confidence 699999999999999999999999999999987653 378999999998789999999999999985
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CCC--------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFD----NPK--------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l 133 (1175)
|.++.+++.+++|+.|..+.+.+.+..++. .+. ...+.+.+.|+.||++|+ ++||+|+++|+|||++
T Consensus 83 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~T~ADi~l 162 (226)
T 3tou_A 83 PPSGRERVEVRCWEALADGLLDAAVALRVEQTQRTPEQRSESWITRQHHKIDEALKAMSRGLADRTWCNGNHLTLADIAV 162 (226)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSTTSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHH
Confidence 567788999999999998888776554332 111 123467889999999999 9999999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++.|.++............||+|.+|+++|.++|.+++++.+.
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~~~ 205 (226)
T 3tou_A 163 GCALAYLDFRQPQVDWREQHANLAAFYTRIEKRPSFLETQPQA 205 (226)
T ss_dssp HHHHHHHHHHCTTSCHHHHCHHHHHHHHHHHTSHHHHTTCGGG
T ss_pred HHHHHHHHhhccccchhhcChHHHHHHHHHhcCHHHHHhCcch
Confidence 9999886533322223578999999999999999999887655
|
| >3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-23 Score=219.23 Aligned_cols=172 Identities=14% Similarity=0.083 Sum_probs=145.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.. ..+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 1 m~Ly~~~~sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~L~ 80 (202)
T 3r2q_A 1 MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVAQFNPLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAML 80 (202)
T ss_dssp CEEEECSSCHHHHHHHHHHHHTTCCCEEEECCTTSSSCSCTTTCTTCCSCEEECTTSCEECSHHHHHHHHHHTCCSSCSS
T ss_pred CEEEeCCCCcHHHHHHHHHHHcCCCCeEEEecCCCCcHHHHHhCCCCCcCeEEecCCcEEecHHHHHHHHHHhCCCCCCC
Confidence 89999999999999999999999999999998753 2378999999997789999999999999985
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhc---CCC--------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFD---NPK--------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|.++.+++.+++|+.|..+.+.+.+..++. .+. ...+.+.+.|+.||++|. ++ |+|+++|+|||+++
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~-l~G~~~t~ADi~l~ 159 (202)
T 3r2q_A 81 PRDPLESLRVRKIEALADGIMDAGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGT-LKTDTVNLATIAIA 159 (202)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTS-SCTTCCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhhhCC-CCCCCCCHHHHHHH
Confidence 567889999999999999888876654432 111 123467899999999999 88 99999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
+.|.++............||+|.+|+++|.++|.|++++
T Consensus 160 ~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 198 (202)
T 3r2q_A 160 CAVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTE 198 (202)
T ss_dssp HHHHHHHHHTCCTTTTTTCHHHHHHHHHHHTSHHHHTTC
T ss_pred HHHHHHHHhccccchhhcCcHHHHHHHHHHcChHHHhhC
Confidence 999987543322234578999999999999999998754
|
| >1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating, A putative oxidoreduct; HET: GSH; 2.50A {Proteus mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=216.22 Aligned_cols=171 Identities=23% Similarity=0.313 Sum_probs=144.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.|+ +++++++|.++|++|+.+.+++.+. .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 1 ~~Ly~~~~s~-~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~ 79 (203)
T 1pmt_A 1 MKLYYTPGSC-SLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLADLKPD 79 (203)
T ss_dssp CEEEECTTST-THHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHTTCGG
T ss_pred CeeeccCCcc-hHHHHHHHHHcCCCceEEEeccccccccCCHHHHhcCCCCCCCeEEecCCcEEeeHHHHHHHHHHhCCc
Confidence 7999999985 9999999999999999999987542 278999999997789999999999999996
Q ss_pred ----CCC-hHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 67 ----KFD-TKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 ----p~~-~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|.+ +.+++++++|+.|..+.+.+.+..++.... ...+.+.+.|+.||++|+ ++||+|+++|+|||+++
T Consensus 80 ~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD~~l~ 159 (203)
T 1pmt_A 80 RNLIAPPKALERYHQIEWLNFLASEVHKGYSPLFSSDTPESYLPVVKNKLKSKFVYINDVLSKQKCVCGDHFTVADAYLF 159 (203)
T ss_dssp GCSSCCTTSHHHHHHHHHHHHHHHTTHHHHGGGGCSSSCTTTHHHHHHHHHHHHHHHHHHHTTSSBTTBSSCCHHHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhHHHHhCccCcHHHHHHHHHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHH
Confidence 455 578999999999998888887665543211 123567899999999999 99999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.+.++.... .....||+|.+|+++|.++|.+++++..
T Consensus 160 ~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 197 (203)
T 1pmt_A 160 TLSQWAPHVA---LDLTDLSHLQDYLARIAQRPNVHSALVT 197 (203)
T ss_dssp HHHSSTGGGT---CCCTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHcC---CCccccHHHHHHHHHHHhCHHHHHHHHH
Confidence 9998764322 2357899999999999999999998764
|
| >4g10_A Glutathione S-transferase homolog; thioredoxin fold; HET: MSE GSH; 1.20A {Sphingomonas paucimobilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-23 Score=227.46 Aligned_cols=175 Identities=11% Similarity=0.101 Sum_probs=139.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------- 66 (1175)
|+||+++.||++++|+++|.++||+|+.+.|++... .+||.|+||+|+.+||.+|+||.||++||.
T Consensus 7 ~~LY~~~~sP~~~rv~i~L~e~gi~ye~~~vd~~~~~pe~~~~~~nP~g~VPvL~~d~g~~l~ES~aI~~YL~~~~p~~~ 86 (265)
T 4g10_A 7 LTIYHIPGCPFSERVEIMLELKGLRMKDVEIDISKPRPDWLLAKTGGTTALPLLDVENGESLKESMVILRYLEQRYPEPA 86 (265)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCCHHHHHHHTSCCCSCEEECTTSCEEECHHHHHHHHHHHSCSSC
T ss_pred eEEEecCCChHHHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHhcCCCCccceEEECCCeEEeccHHHHHHHhhcCcchh
Confidence 799999999999999999999999999999998652 268999999998889999999999999985
Q ss_pred --CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCC--------chHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHH
Q psy7266 67 --KFDTKNESAINQWLEWESVELFPSVLSFFDNPKV--------LPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWT 135 (1175)
Q Consensus 67 --p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~--------~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~ 135 (1175)
|.++.+++.+++|+++....+.+.+..++..... ....+...+..|+++|. ++||+|+++|+|||++++
T Consensus 87 L~P~d~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~l~~~~~l~Gd~~t~ADi~l~p 166 (265)
T 4g10_A 87 VAHPDPFCHAVEGMLAELAGPFSGAGYRMILNREIGKREEMRAAVDAEFGKVDAFLKRYATGSDFLFDDRFGWAEVAFTP 166 (265)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHCCSSSSSSTTCCCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchhHHHHHHHHHhhhhhHHHHHHHhccCccccCCCCeeeHHHHHH
Confidence 6788899999999998776554444433321111 12345566667777777 899999999999999999
Q ss_pred HHHHHhh--CCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 136 CVYPLLS--DSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 136 ~L~~~~~--~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
.+.++.. ..........||+|.+|+++|.++|+|+++..+
T Consensus 167 ~l~~l~~l~~~~~~~~~~~~P~l~~w~~r~~~rPa~q~t~~e 208 (265)
T 4g10_A 167 MFKRLWFLDYYEDYEVPANFDRVLRWRAACTAHPAAQYRSKE 208 (265)
T ss_dssp HHHHTHHHHHHSCCCCCTTCHHHHHHHHHHHHSGGGCSSCHH
T ss_pred HHHHHHHHhhhcCCCccccCHHHHHHHHHHHcCHHHHhhCcH
Confidence 8887532 111223457899999999999999999987553
|
| >4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-23 Score=224.34 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=152.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCC-CcccEEEeCCCcEEeCHHHHHHHHc--------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLS-KTVPVLELDDGSQLFSANQSCLYLS-------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~-g~vP~L~~~dG~~l~eS~aI~~YL~-------- 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+||. |+||+|+ +||.+|+||.+|++||.
T Consensus 13 ~~Ly~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~nP~~g~vPvL~-~~g~~l~eS~aI~~YL~~~~~~~~L 91 (231)
T 4dej_A 13 MTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLV-DRELVLYNAQIIMEYLDERFPHPPL 91 (231)
T ss_dssp CEEEECSSCHHHHHHHHHHHHHTCBCEEEECCSSCCCHHHHHHCCSSSCCSEEE-ETTEEEESHHHHHHHHHHHSCSSCC
T ss_pred EEEEcCCCChHHHHHHHHHHHcCCCcEEEEcCcccCCHHHHHhCCCCCCCCEEE-ECCEEEEcHHHHHHHHHHHCCCCCc
Confidence 689999999999999999999999999999987642 27899 9999997 88999999999999985
Q ss_pred -CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCC
Q psy7266 67 -KFDTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDS 144 (1175)
Q Consensus 67 -p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~ 144 (1175)
|.++.+++.+++|+.+..+.+.+.+..++.......+.+.+.|+.||++|+ ++||+|+++|+|||++++.|.++....
T Consensus 92 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~ 171 (231)
T 4dej_A 92 MPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYG 171 (231)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHTCSHHHHHHHHHHHHSTTHHHHCSBTTBSSCCTTHHHHHHHHHTHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHHcC
Confidence 667789999999999999888887666543333456788999999999999 999999999999999999999875433
Q ss_pred CCCCCcccchhHHHHHHHHhcCHHHHHHHHHHHHHhc
Q psy7266 145 KVRPLLSSYTNITPWYDRISKLPQVQKALKTWTEVLK 181 (1175)
Q Consensus 145 ~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~~~~~k 181 (1175)
.. .....||+|.+|+++|.++|.|++++......+.
T Consensus 172 ~~-~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~ 207 (231)
T 4dej_A 172 ID-LEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELA 207 (231)
T ss_dssp CC-CCSTTHHHHHHHHHHHHTCHHHHHHCCHHHHHHH
T ss_pred CC-CChhhCHHHHHHHHHHhcCHHHHHHccCHHHHHH
Confidence 21 1236899999999999999999999877644444
|
| >1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=216.65 Aligned_cols=172 Identities=23% Similarity=0.344 Sum_probs=146.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------- 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++..+ .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~ 79 (210)
T 1v2a_A 1 MDYYYSLISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLV-DNGHVVWESYAIVLYLVETYAKDD 79 (210)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEE-ETTEEEESHHHHHHHHHHHHCSSS
T ss_pred CeEEeCCCCccHHHHHHHHHHcCCCcEEEECCcccchhhHHHHHhCCCCCcCeEE-ECCEEEEcHHHHHHHHHHHcCCCc
Confidence 799999999999999999999999999999987532 378999999997 78999999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhhhhhhc-------CCCCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHH
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSVLSFFD-------NPKVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWT 135 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-------~g~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~ 135 (1175)
|.++.+++.+++|+.|..+.+.+.+..++. ......+.+.+.|+.||++|+ ++||+|+++|+|||++++
T Consensus 80 ~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~ 159 (210)
T 1v2a_A 80 TLYPKDPKVRSVVNQRLFFDIGTLYKRIIDVIHLVMKKEQPSDEQMEKLKGALDLLEQFVTERAYAAADHLTVADICLLG 159 (210)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTCCCCTTHHHHHHHHHHHHHHHHHHSSSSSSSSCCHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCCcccCCCCCHHHHHHHH
Confidence 456778999999999998888776654432 122345678999999999999 999999999999999999
Q ss_pred HHHHHhhCCCCCCCcccchhHHHHHHHHhcC-HHHHHHHHHH
Q psy7266 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKL-PQVQKALKTW 176 (1175)
Q Consensus 136 ~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~-P~~~~~l~~~ 176 (1175)
.|.++.... .....||+|.+|+++|.++ |.+++++..-
T Consensus 160 ~l~~~~~~~---~~~~~~p~l~~w~~~~~~~~p~~~~~~~~~ 198 (210)
T 1v2a_A 160 TVTALNWLK---HDLEPFPHIRAWLERVRAEMPDYEEFSKQV 198 (210)
T ss_dssp HHHGGGTTT---CCCTTCHHHHHHHHHHHTTSTTHHHHHHHH
T ss_pred HHHHHHhcC---CChhhCchHHHHHHHHHHHCccHHHHhHHH
Confidence 999864332 2367899999999999996 9999987653
|
| >3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=216.97 Aligned_cols=172 Identities=20% Similarity=0.325 Sum_probs=146.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.+. .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 2 ~~Ly~~~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 80 (209)
T 3ein_A 2 VDFYYLPGSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINPQHTIPTLV-DNGFALWESRAIQVYLVEKYGKT 80 (209)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHTTCTTCCSCEEE-ETTEEEECHHHHHHHHHHHHCSS
T ss_pred eEEecCCCCccHHHHHHHHHHcCCCcEEEEcccccCCcCCHHHHhcCCCCCCCEEE-ECCEEEEcHHHHHHHHHHhcCCC
Confidence 799999999999999999999999999999997652 278999999996 79999999999999985
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CC----CCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhH
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFD----NP----KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g----~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l 133 (1175)
|.++.+++.+++|+.|..+.+.+.+...+. .+ ....+.+.+.|+.||++|+ ++||+|+++|+|||++
T Consensus 81 ~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l 160 (209)
T 3ein_A 81 DSLYPKCPKKRAVINQRLYFDMGTLYQSFANYYYPQVFAKAPADPEAFKKIEAAFEFLNTFLEGQDYAAGDSLTVADIAL 160 (209)
T ss_dssp STTSCSCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTCSSSSSSSCCHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccCceecCCCCCHHHHHH
Confidence 456778999999999998888877655432 11 1234678999999999999 9999999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhc-CHHHHHHHHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISK-LPQVQKALKTW 176 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~-~P~~~~~l~~~ 176 (1175)
++.|.++.... .....||+|.+|+++|.+ +|.+++.....
T Consensus 161 ~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~~p~~~~~~~~~ 201 (209)
T 3ein_A 161 VATVSTFEVAK---FEISKYANVNRWYENAKKVTPGWEENWAGC 201 (209)
T ss_dssp HHHHHHHHHTT---CCGGGSHHHHHHHHHHHHHSTTHHHHHHHH
T ss_pred HHHHHHHHhcC---CChhhCHHHHHHHHHHHhhCccHHHHHHHH
Confidence 99999874332 236889999999999999 99999966554
|
| >3lyp_A Stringent starvation protein A; structural genomics, GST-superfamily, SSPA, stringent starva protein A homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-23 Score=221.27 Aligned_cols=173 Identities=13% Similarity=0.170 Sum_probs=144.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 9 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~L~ 87 (215)
T 3lyp_A 9 LACYSDPADHYSHRVRIVLAEKGVSAEIISVEAGRQPPKLIEVNPYGSLPTLV-DRDLALWESTVVMEYLDERYPHPPLL 87 (215)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECC---CCHHHHHHCTTCCSSEEE-CC-CEEESHHHHHHHHHHHSCSSCCS
T ss_pred eEEEeCCCCchHHHHHHHHHHCCCCcEEEecCcccccHHHHHHCCCCCcCeEE-ECCEEeecHHHHHHHHHHhCCCCCCC
Confidence 689999999999999999999999999999987642 268999999996 89999999999999985
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
|.++.+++.+++|+.|..+.+.+.+..++.... ...+.+...|+.||++|+ ++||+|+++|+|||++++.|.+
T Consensus 88 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~l~~ 167 (215)
T 3lyp_A 88 PVYPVARANSRLLIHRIQRDWCGQVDLILDPRTKEAARVQARKELRESLTGVSPLFADKPFFLSEEQSLVDCCLLPILWR 167 (215)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHGGGGGTSSBTTBSSCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCCCCHHHHHHHHHHHH
Confidence 567789999999999999888887766543211 224467889999999999 9999999999999999999998
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+..... .....||+|.+|+++|.++|.+++++.+-
T Consensus 168 ~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 202 (215)
T 3lyp_A 168 LPVLGI--ELPRQAKPLLDYMERQFAREAFQASLSGV 202 (215)
T ss_dssp TTTTTC--CCCGGGHHHHHHHHHHHHSHHHHHHCCHH
T ss_pred HHHhCC--CccccChHHHHHHHHHHcCHHHHHhcccH
Confidence 643322 22378999999999999999999988765
|
| >3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=221.12 Aligned_cols=174 Identities=18% Similarity=0.248 Sum_probs=145.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCC--CcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTT--KLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS---- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi--~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---- 66 (1175)
|+||+++.||++++++++|.++|+ +|+.+.+++... .+||.|+||+|+++||.+|+||.||++||.
T Consensus 19 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~ 98 (233)
T 3ibh_A 19 MIIYDTPAGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLAKNYSGTVPVLELDDGTLIAECTAITEYIDALDG 98 (233)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCGGGCEEEECCGGGTGGGSHHHHHHCTTCCSCEEECTTCCEEESHHHHHHHHHHHTS
T ss_pred eEEecCCCCCccHHHHHHHHhcCCCCCceEEEeccccccccChHHhccCCCCccceEEecCCeEEecHHHHHHHHHHhCC
Confidence 689999999999999999999999 999999987642 278999999997789999999999999985
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhhhhhhc-----CCC------------CchHHHHHHHHHHHHHhc-CCcccC
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSVLSFFD-----NPK------------VLPDNLKTKLNVLNEAIS-NSFLIE 123 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-----~g~------------~~~~~l~~~L~~Le~~L~-~~fLvG 123 (1175)
|.++.+++.+++|+.|....+.+.+..++. .+. ...+.+.+.|+.||++|. ++||+|
T Consensus 99 ~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G 178 (233)
T 3ibh_A 99 TPTLTGKTPLEKGVIHMMNKRAELELLDPVSVYFHHATPGLGPEVELYQNKEWGLRQRDKALHGMHYFDTVLRERPYVAG 178 (233)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSCTTCTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTTCSBTTB
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCCcccC
Confidence 567789999999999998888776554432 111 134567899999999999 999999
Q ss_pred CCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 124 NSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 124 ~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+++|+|||++++.|.++..... .....||+|.+|+++|.++|.++++++..
T Consensus 179 ~~~t~ADi~l~~~l~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 229 (233)
T 3ibh_A 179 DSFSMADITVIAGLIFAAIVKL--QVPEECEALRAWYKRMQQRPSVKKLLEIR 229 (233)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTC--CCCTTCHHHHHHHHHHHHSHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHHHhCC--CchhhChhHHHHHHHHHhCHHHHHHHhhC
Confidence 9999999999999988653322 33478999999999999999999998764
|
| >3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-23 Score=220.78 Aligned_cols=178 Identities=13% Similarity=0.128 Sum_probs=147.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.+. .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 7 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~L~ 85 (216)
T 3lyk_A 7 MTLFSNKDDIYCHQVKIVLAEKGVLYENAEVDLQALPEDLMELNPYGTVPTLV-DRDLVLFNSRIIMEYLDERFPHPPLM 85 (216)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHCTTCCSCEEE-ETTEEEESHHHHHHHHHHHSCSSCCS
T ss_pred EEEEeCCCChhHHHHHHHHHHcCCCcEEEeCCcccCcHHHHhhCCCCCcCeEE-ECCeEecCHHHHHHHHHHhCCCCCCC
Confidence 589999999999999999999999999999997642 278999999997 88999999999999985
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHh
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPK----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLL 141 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~ 141 (1175)
|.++.+++.+++|+.|..+.+.+.+..++.... ...+.+.+.|+.||++|. ++||+|+++|+|||++++.|.++.
T Consensus 86 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~ADi~l~~~l~~~~ 165 (216)
T 3lyk_A 86 QVYPVSRAKDRLLMLRIEQDWYPTLAKAENGTEKEKTSALKQLKEELLGIAPIFQQMPYFMNEEFGLVDCYVAPLLWKLK 165 (216)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHSSBTTBSSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 567789999999999999888877665543211 234567899999999999 999999999999999999999875
Q ss_pred hCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHHHHHh
Q psy7266 142 SDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTWTEVL 180 (1175)
Q Consensus 142 ~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~~~~~ 180 (1175)
.... ......||+|.+|+++|.++|.|++++.+-....
T Consensus 166 ~~~~-~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~ 203 (216)
T 3lyk_A 166 HLGV-EFTGTGSKAIKAYMERVFTRDSFLQSVGEAAPKN 203 (216)
T ss_dssp TTTC-CCCSTTHHHHHHHHHHHHTSHHHHHHTC------
T ss_pred HcCC-CCccccCHHHHHHHHHHhcCHHHHHhcCcHHHhc
Confidence 4322 1122689999999999999999999987764333
|
| >3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-23 Score=221.61 Aligned_cols=173 Identities=11% Similarity=0.044 Sum_probs=145.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++... .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 3 ~~Ly~~~~sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~~L 82 (213)
T 3m0f_A 3 LKLIGMLDSPYVRRVAISLKSLGLPFEHHSLSVFSTFEQFKAINPVVKAPTLVCEGGEVLMDSSLIIDYLETLAGPQRSL 82 (213)
T ss_dssp CEEESCTTSHHHHHHHHHHHHHTCCCEEECCCTTTTHHHHHHHCTTCCSSEEECTTCCEEESHHHHHHHHHHHHCGGGCS
T ss_pred EEEecCCCCCcHHHHHHHHHHCCCCcEEEEecCCCCcHHHHhcCCCCCcCeEEeCCCcEEEcHHHHHHHHHHhcCCCCCC
Confidence 699999999999999999999999999999987642 278999999998789999999999999985
Q ss_pred -CCChHHHHHHHHHHHHHhhhchhhhhhhhc--C-C-C--------CchHHHHHHHHHHHHHhc-CC-cccCCCCCccch
Q psy7266 67 -KFDTKNESAINQWLEWESVELFPSVLSFFD--N-P-K--------VLPDNLKTKLNVLNEAIS-NS-FLIENSTTVADI 131 (1175)
Q Consensus 67 -p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~--~-g-~--------~~~~~l~~~L~~Le~~L~-~~-fLvG~~lTlADi 131 (1175)
|.++.+++.+++|+.|..+.+.+.+..++. . . . ...+.+.+.|+.||++|. ++ ||+| ++|+|||
T Consensus 83 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G-~~t~ADi 161 (213)
T 3m0f_A 83 MPTALPQRLRELRLVGLALAACEKSVQIVYERNLRPAEKQHGPWLERVGGQLQAAYGELEQELQKQPLPRDG-SLGQAGI 161 (213)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSS-CCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CCCHHHH
Confidence 567789999999999998888776544432 1 1 1 123567899999999999 76 9999 9999999
Q ss_pred hHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 132 CIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 132 ~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
++++.|.++............||+|.+|+++|.++|.|++++.
T Consensus 162 ~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 204 (213)
T 3m0f_A 162 SLAVAWSFSQMMVADQFNPGQFPAVRGFAEYAEQLPVFLATPA 204 (213)
T ss_dssp HHHHHHHHHHHHCGGGCCTTSSHHHHHHHHHHTTSHHHHTSCC
T ss_pred HHHHHHHHHHHHccccCCcccCcHHHHHHHHHhcChHHHHhcc
Confidence 9999999875443222446789999999999999999987653
|
| >1f2e_A Glutathione S-transferase; GST complexed with glutathione, thioredoxin superfamily fold transferase; HET: GSH; 2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=215.79 Aligned_cols=171 Identities=20% Similarity=0.280 Sum_probs=144.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++. +++++++++|.++|++|+.+.+++.+. .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 1 ~~Ly~~~~-~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~ 79 (201)
T 1f2e_A 1 MKLFISPG-ACSLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYIADQNPA 79 (201)
T ss_dssp CEEEECTT-STTHHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHHTCTT
T ss_pred CeeeecCC-ccHHHHHHHHHHcCCCceEEEeecCCCCCCCChHHHccCcCCCCceEEecCCcEeeHHHHHHHHHHHhCCC
Confidence 79999985 689999999999999999999987542 268999999997789999999999999996
Q ss_pred ----CC-ChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 67 ----KF-DTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 ----p~-~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|. ++.+++.+++|+.|..+.+.+.+..++.... ...+.+.+.|+.||++|+ ++||+|+++|+|||+++
T Consensus 80 ~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~~~ 159 (201)
T 1f2e_A 80 SGLAPAEGSLDRYRLLSRLSFLGSEFHKAFVPLFAPATSDEAKAAAAESVKNHLAALDKELAGRDHYAGNAFSVADIYLY 159 (201)
T ss_dssp TCSSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHSCSSSSSSSCCHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHHHhccCceecCCCCcHHHHHHH
Confidence 44 4678999999999998888887665544221 123467889999999999 99999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.+.++.... .....||+|.+|+++|.++|.+++++..
T Consensus 160 ~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 197 (201)
T 1f2e_A 160 VMLGWPAYVG---IDMAAYPALGAYAGKIAQRPAVGAALKA 197 (201)
T ss_dssp HHTTSGGGGT---CCGGGCHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHcC---CCcccchHHHHHHHHHHcCHHHHHHHHh
Confidence 9998864332 2357899999999999999999998764
|
| >3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-23 Score=219.13 Aligned_cols=172 Identities=22% Similarity=0.322 Sum_probs=144.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeC----CC--cEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELD----DG--SQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~----dG--~~l~eS~aI~~YL~ 66 (1175)
|+||+++ ||++++++++|+++|++|+.+.+++... .+||.|+||+|+.+ +| .+|+||.||++||.
T Consensus 2 ~~Ly~~~-s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~~dG~~~~l~eS~aI~~yL~ 80 (215)
T 3gx0_A 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_dssp EEEEECS-SHHHHHHHHHHHHHTCCEEEEECCTTTTGGGSHHHHTTCTTSCSCEEEESSCTTCCSCEEEESHHHHHHHHH
T ss_pred eEEEeCC-CCChHHHHHHHHHcCCCcEEEecCCCCCCCCChHHHHhCCCCCCCEEEeCCCCCCCCceEEEcHHHHHHHHH
Confidence 6899998 9999999999999999999999998652 27899999999877 46 89999999999985
Q ss_pred -------CCChHHHHHHHHHHHHHhhhchhhhhhhhc----C-CC------CchHHHHHHHHHHHHHhc-CCcccCCCCC
Q psy7266 67 -------KFDTKNESAINQWLEWESVELFPSVLSFFD----N-PK------VLPDNLKTKLNVLNEAIS-NSFLIENSTT 127 (1175)
Q Consensus 67 -------p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~-g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lT 127 (1175)
|.++.+++.+++|+.|..+.+.+.+..... . +. .....+.+.|+.||++|. ++||+|+++|
T Consensus 81 ~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 160 (215)
T 3gx0_A 81 EKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYS 160 (215)
T ss_dssp HHHSCSSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHCSBTTBSSCC
T ss_pred HHccccCCCCHHHHHHHHHHHHHHhhccccchhhHhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCC
Confidence 778889999999999999888887654321 1 11 123457889999999999 9999999999
Q ss_pred ccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 128 VADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 128 lADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+|||++++.|.++.... .....||+|.+|+++|.++|.+++++...
T Consensus 161 ~ADi~~~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 206 (215)
T 3gx0_A 161 IADIACWPWVNAWTRQR---IDLAMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_dssp HHHHHHHHHHTTGGGGT---CCGGGSHHHHHHHHHHHTSHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhcC---CCcccCchHHHHHHHHHcCHHHHHHHhhh
Confidence 99999999999864332 23678999999999999999999988654
|
| >2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET: GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=212.47 Aligned_cols=170 Identities=20% Similarity=0.230 Sum_probs=143.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.|+ +++++++|.++|++|+.+.+++.+. .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 1 ~~Ly~~~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~ 79 (201)
T 2pvq_A 1 MKLYYKVGAA-SLAPHIILSEAGLPYELEAVDLKAKKTADGGDYFAVNPRGAVPALEVKPGTVITQNAAILQYIGDHSDV 79 (201)
T ss_dssp CEEEECTTST-THHHHHHHHHHTCCCEEEECBTTTTBCTTSCBGGGTCTTCCSCEEEEETTEEEESHHHHHHHHHHTSSC
T ss_pred CeeeeCCCcc-HHHHHHHHHhcCCCceEEEecccccCCCCCHHHHhhCcCCCCCEEEeCCCCEEehHHHHHHHHHHhCCc
Confidence 7999999996 9999999999999999999987542 268999999998789999999999999985
Q ss_pred ----CCC-hHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc--CCcccCCCCCccchhH
Q psy7266 67 ----KFD-TKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 ----p~~-~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l 133 (1175)
|.+ +.+++.+++|+.|.. .+.+.+..++.... ...+.+.+.|+.||++|+ ++||+|+++|+|||++
T Consensus 80 ~~L~p~~~~~~~a~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~~~t~ADi~~ 158 (201)
T 2pvq_A 80 AAFKPAYGSIERARLQEALGFCS-DLHAAFSGLFAPNLSEEARAGVIANINRRLGQLEAMLSDKNAYWLGDDFTQPDAYA 158 (201)
T ss_dssp GGGCCCTTSHHHHHHHHHHHHHH-HHHHHHHGGGCTTCCHHHHHHHHHHHHHHHHHHHHHCCTTCSBTTBSSCCHHHHHH
T ss_pred ccCcCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcccHHHHHH
Confidence 555 588999999999998 77777655543211 123467889999999997 7899999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
++.+.++..... ....||+|.+|+++|.++|.+++++..
T Consensus 159 ~~~l~~~~~~~~---~~~~~p~l~~w~~~~~~~p~~~~~~~~ 197 (201)
T 2pvq_A 159 SVIIGWGVGQKL---DLSAYPKALKLRERVLARPNVQKAFKE 197 (201)
T ss_dssp HHHHHHHHHTTC---CCTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CchhhHHHHHHHHHHHcCHHHHHHHHh
Confidence 999998754322 357899999999999999999998764
|
| >3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=216.21 Aligned_cols=173 Identities=20% Similarity=0.338 Sum_probs=145.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---C--
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS---K-- 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p-- 67 (1175)
|+||+++.||++++++++|+++|++|+.+.+++.+. .+||.|+||+|+.+||.+|+||.+|++||. +
T Consensus 1 m~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 80 (219)
T 3f6d_A 1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLNPQHCIPTLVDEDGFVLWESRAIQIYLVEKYGAH 80 (219)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHHHHTTT
T ss_pred CEEEeCCCCCchHHHHHHHHHcCCCceEEEccCcccccCCHHHHhhCCCCccCeEEeCCCCEEEcHHHHHHHHHHhcCCC
Confidence 899999999999999999999999999999998652 268999999998659999999999999985 3
Q ss_pred ----------CChHHHHHHHHHHHHHhhhchhhhhhhhc---CC-C------CchHHHHHHHHHHHHHhc-CCccc-CCC
Q psy7266 68 ----------FDTKNESAINQWLEWESVELFPSVLSFFD---NP-K------VLPDNLKTKLNVLNEAIS-NSFLI-ENS 125 (1175)
Q Consensus 68 ----------~~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g-~------~~~~~l~~~L~~Le~~L~-~~fLv-G~~ 125 (1175)
.++.+++.+++|+.|..+.+.+.+...+. .+ . ...+.+.+.|+.||++|+ ++||+ |++
T Consensus 81 ~~~~~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~gG~~ 160 (219)
T 3f6d_A 81 DADLAERLYPSDPRRRAVVHQRLFFDVAVLYQRFAEYYYPQIAGQKVPVGDPGRLRSMEQALEFLNTFLEGEQYVAGGDD 160 (219)
T ss_dssp SHHHHHHHSCCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSTTCCSSCCHHHHHHHHHHHHHHHHHTTTCSSTTCSSS
T ss_pred ccccccccCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEecCCC
Confidence 35678999999999999888887665433 11 1 223578899999999999 99999 999
Q ss_pred CCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcC-HHHHHHHHHH
Q psy7266 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKL-PQVQKALKTW 176 (1175)
Q Consensus 126 lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~-P~~~~~l~~~ 176 (1175)
+|+|||++++.|.++.... .....||+|.+|+++|.++ |.+++.....
T Consensus 161 ~t~ADi~l~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~lp~~~~~~~~~ 209 (219)
T 3f6d_A 161 PTIADLSILATIATYEVAG---YDLRRYENVQRWYERTSAIVPGADKNVEGA 209 (219)
T ss_dssp CCHHHHHHHHHHHHHHHTT---CCGGGSHHHHHHHHHHHHHSTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcC---CChhhChhHHHHHHHHHHhCccHHHHHHHH
Confidence 9999999999999874332 2358899999999999997 9999955444
|
| >3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-23 Score=222.45 Aligned_cols=169 Identities=20% Similarity=0.254 Sum_probs=142.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 4 ~~Ly~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~L~ 83 (225)
T 3m8n_A 4 YKLYSMQRSGNSYKVRLALALLDAPYRAVEVDILRGESRTPDFLAKNPSGQVPLLETAPGRYLAESNAILWYLAVGTSLA 83 (225)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEEEECCGGGTTTSSHHHHTTCTTCCSSEEECSTTCEEECHHHHHHHHHTTSTTS
T ss_pred eEEecCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCCccCCHHHHHhCCCCCCCEEEeCCCCEEEcHHHHHHHHHcCCCcC
Confidence 589999999999999999999999999999987532 278999999998789999999999999985
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CC--C--------CchHHHHHHHHHHHHHhc-CCcccCCCCCccch
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFD----NP--K--------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADI 131 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g--~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi 131 (1175)
|.++.+++.+++|+.|....+.+.+....+ .+ . ...+.+.+.|+.||++|. ++||+|+++|+|||
T Consensus 84 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~T~ADi 163 (225)
T 3m8n_A 84 PDTRMDRAEALQWMFFEQHALEPNIGSAYFWLCLVKGGRDLQTHALEDWLERGYAALQVMENHLKTNDYFAAGQLTIADI 163 (225)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHTSTTCTGGGTTTHHHHHHHHHHHHHHHHHHTTSCSSSBTTBCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCccHHHH
Confidence 778889999999999999888776543211 11 1 123467889999999999 99999999999999
Q ss_pred hHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 132 CIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 132 ~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
++++.|.++.... .....||+|.+|+++|.++|.++++
T Consensus 164 ~l~~~l~~~~~~~---~~~~~~p~l~~w~~r~~~~p~~~~~ 201 (225)
T 3m8n_A 164 ALYGYTHVADQCD---FDLSTFPAVNAWLRRVEQTPGFITM 201 (225)
T ss_dssp HHHHHHTTGGGTT---CCCTTCHHHHHHHHHHHTSTTCCCT
T ss_pred HHHHHHHHHHHcC---CChhhChHHHHHHHHHHcChhhhhh
Confidence 9999999864322 2357899999999999999999876
|
| >3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=217.52 Aligned_cols=170 Identities=20% Similarity=0.296 Sum_probs=143.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++..+ .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~d~g~~l~eS~aI~~yL~~~~~L~ 83 (210)
T 3m3m_A 4 YKVYGDYRSGNCYKIKLMLNLLGLPYEWQAVDILGGDTQTEAFLAKNPNGKIPVLELEDGTCLWESNAILNFLADGSQFL 83 (210)
T ss_dssp EEEEECTTSHHHHHHHHHHHHTTCCEEEEECCTTTTTTSSHHHHTTCTTCCSCEEEETTSCEEECHHHHHHHHHTTSTTS
T ss_pred EEEeCCCCCCcHHHHHHHHHHcCCCCEEEEecCCCccccCHHHHhhCCCCCCCEEEecCCEEEecHHHHHHHHhcCCCcC
Confidence 589999999999999999999999999999987431 278999999998789999999999999985
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CCCC---------chHHHHHHHHHHHHHhc-CCcccCCCCCccchh
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFD----NPKV---------LPDNLKTKLNVLNEAIS-NSFLIENSTTVADIC 132 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g~~---------~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~ 132 (1175)
|.++.+++.+++|+.|..+.+.+.+..... .+.. ..+.+.+.|+.||++|. ++||+|+++|+|||+
T Consensus 84 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~ 163 (210)
T 3m3m_A 84 PSEPRLRTQVLQWQFFEQYSHEPYIAVARFIQLYEGLPEERREEYLKLHKRGYKALDVMEKQLSRTPYLVGEHYSIADIA 163 (210)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhccchhHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHH
Confidence 778889999999999999888876554321 1221 12356788999999999 999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 133 IWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 133 l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
+++.|.++.... .....||+|.+|+++|.++|.|+++.
T Consensus 164 l~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~ 201 (210)
T 3m3m_A 164 LYAYTHVADEGG---FDLSRYPGIQAWMQRVQSHPRHVPML 201 (210)
T ss_dssp HHHHHTTGGGGT---CCGGGCHHHHHHHHHHHTSTTCCCSC
T ss_pred HHHHHHHhhhcC---CChhhChHHHHHHHHHHcCcchhhhh
Confidence 999999864322 23578999999999999999987654
|
| >3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=215.42 Aligned_cols=168 Identities=22% Similarity=0.347 Sum_probs=141.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++..+ .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 82 (216)
T 3ay8_A 4 LKLYHFPVSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLD-DNNFVLWESRAIACYLADKYGKD 82 (216)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCGGGCCHHHHHHSSSCCSSEEE-ETTEEEECHHHHHHHHHHHHCSS
T ss_pred eEEecCCCCccHHHHHHHHHHcCCCceEEEeccccccccCHHHHhhCCCCCCCeEE-ECCEEEEcHHHHHHHHHHHcCCc
Confidence 689999999999999999999999999999997532 268999999997 78999999999999995
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhc----C-CC----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchh
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFD----N-PK----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADIC 132 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~-g~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~ 132 (1175)
|.++.+++.+++|+.|..+.+.+.+..++. . .. ...+.+.+.|+.||++|. ++||+|+++|+|||+
T Consensus 83 ~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~ 162 (216)
T 3ay8_A 83 DQWYPKDLQKRAVVNQRLYFDSASLYVKIRAICFPILFLGETEIKQSLKDDLNSTLSFLNQFLEKTKWVAADHPTIADTS 162 (216)
T ss_dssp STTSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSCCCSCCHHHHHHHHHHHHHHHHHHHHSSSSSSSSCCHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhhcchHHHHHHHhhHHHhcCCCCcCHHHHHHHHHHHHHHHHHHccCCCccCCCCCHHHHH
Confidence 456778999999999998888776554322 1 11 224578899999999999 999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 133 IWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 133 l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
+++.|.++.... .....||+|.+|+++|.++|.++..
T Consensus 163 ~~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~ 199 (216)
T 3ay8_A 163 IYASMSSILAVG---WDISSFPNIQRWIKDCLLLPGAPEN 199 (216)
T ss_dssp HHHHHHHHHHHC---CCCTTCHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHHhcC---CChhhChhHHHHHHHHHcCCchhhh
Confidence 999999875432 2357899999999999999999543
|
| >2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-22 Score=212.38 Aligned_cols=171 Identities=18% Similarity=0.218 Sum_probs=144.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCCh
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFDT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~~ 70 (1175)
|+||+++.||+++++|++|.++|++|+.+.++... ..+||.|+||+|+ +||.+|+||.+|++||. |.++
T Consensus 3 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~l~p~~~ 81 (202)
T 2gsq_A 3 YTLHYFPLMGRAELCRFVLAAHGEEFTDRVVEMADWPNLKATMYSNAMPVLD-IDGTKMSQSMCIARHLAREFGLDGKTS 81 (202)
T ss_dssp EEEEECSSSGGGHHHHHHHHHTTCCCEEEECCTTTHHHHGGGSGGGSSCEEE-ETTEEECCHHHHHHHHHHHTTCSCSSH
T ss_pred cEEEEcCCCchhHHHHHHHHHcCCCeeEEEeCHHHHHhhcccCCCCCCCEEE-ECCEEEecHHHHHHHHHHHhCCCCCCH
Confidence 68999999999999999999999999999998743 2378999999997 68899999999999985 7788
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhcCCCC--------chHHHHHHHHHHHHHhc-C----CcccCCCCCccchhHHHHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFDNPKV--------LPDNLKTKLNVLNEAIS-N----SFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~--------~~~~l~~~L~~Le~~L~-~----~fLvG~~lTlADi~l~~~L 137 (1175)
.+++.+++|+.+.. .+.+.+..+++.+.. ..+.+.+.|+.||++|. + +||+|+++|+|||++++.|
T Consensus 82 ~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~ADi~l~~~l 160 (202)
T 2gsq_A 82 LEKYRVDEITETLQ-DIFNDVVKIKFAPEAAKEAVQQNYEKSCKRLAPFLEGLLVSNGGGDGFFVGNSMTLADLHCYVAL 160 (202)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSCSSTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhCchhhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCeeeCCcCCHHHHHHHHHH
Confidence 89999999999988 566666555442211 12457889999999999 8 9999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
.++..... .....||+|.+|+++|.++|.+++++..
T Consensus 161 ~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 196 (202)
T 2gsq_A 161 EVPLKHTP--ELLKDCPKIVALRKRVAECPKIAAYLKK 196 (202)
T ss_dssp HHHHHHCT--TTTTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHhhCc--cccccCcHHHHHHHHHHhCHHHHHHHHc
Confidence 98754222 2457899999999999999999998865
|
| >2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=214.35 Aligned_cols=171 Identities=17% Similarity=0.157 Sum_probs=141.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCCh
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFDT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~~ 70 (1175)
|+||+++.||++++++++|+++|++|+.+.++... ..+||.|+||+|+ +||.+|+||.+|++||. |.++
T Consensus 3 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~L~p~~~ 81 (198)
T 2cvd_A 3 YKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILE-VDGLTLHQSLAIARYLTKNTDLAGNTE 81 (198)
T ss_dssp EEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGGHHHHHTTSTTSCSCEEE-ETTEEEECHHHHHHHHHTTSTTSCSSH
T ss_pred cEEEEcCCCchHHHHHHHHHHcCCCceEEEeCHHHHHHhccCCCCCCCCEEE-ECCEEEecHHHHHHHHHHHcCCCCCCH
Confidence 68999999999999999999999999999998743 2378999999997 78999999999999985 6788
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhcCCCC---------chHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFDNPKV---------LPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPL 140 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~---------~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~ 140 (1175)
.+++.+++|+++..+ +.+.+..+. .... ....+.+.|+.||++|+ ++||+|+++|+|||++++.|.++
T Consensus 82 ~~~a~~~~~~~~~~~-l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~l~~~ 159 (198)
T 2cvd_A 82 MEQCHVDAIVDTLDD-FMSCFPWAE-KKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGMSVTWADFYWEICSTTL 159 (198)
T ss_dssp HHHHHHHHHHHHHHH-HHHTSCTTC-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCSSSSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHh-cChhHHHHHHHHHHhcchHHHHHHHHHHHHHCCCccCCCCcHHHHHHHHHHHHH
Confidence 899999999999884 555432211 1100 02346888999999999 99999999999999999999986
Q ss_pred hhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 141 LSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 141 ~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
..... .....||+|.+|+++|.++|.+++++...
T Consensus 160 ~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 193 (198)
T 2cvd_A 160 LVFKP--DLLDNHPRLVTLRKKVQAIPAVANWIKRR 193 (198)
T ss_dssp HHHCT--TTTTTCHHHHHHHHHHHTSHHHHHHHHHS
T ss_pred HhhCc--chhhcCcHHHHHHHHHHhCHHHHHHHhcC
Confidence 54322 34578999999999999999999988653
|
| >4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=219.81 Aligned_cols=171 Identities=18% Similarity=0.254 Sum_probs=145.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+||.|+||+|+++||.+|+||.+|++||.
T Consensus 23 ~~Ly~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~~g~~l~eS~aI~~yL~~~~~L~ 102 (230)
T 4hz2_A 23 MRIYGMNGSGNCWKAAQILSLTGHDFEWVETSSGAAGTRSADFLALNAIGKVPVVVLDDGTALRESNAILLHFAEGTPWL 102 (230)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSSTTTTTSHHHHHHCTTCCSCEEECTTSCEEECHHHHHHHHHTTSTTS
T ss_pred heeeCCCCCccHHHHHHHHHHcCCCceEEEecCCCCccCCHHHHhhCCCCCCCEEEecCCEEeeCHHHHHHHHhccCCCC
Confidence 689999999999999999999999999999997632 278999999997789999999999999986
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CCCC---------chHHHHHHHHHHHHHhc-CCcccCCCCCccchh
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFD----NPKV---------LPDNLKTKLNVLNEAIS-NSFLIENSTTVADIC 132 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g~~---------~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~ 132 (1175)
|.++.+++.+++|+.|..+.+.+.+....+ .+.. ..+.+.+.|+.||++|. ++||+|+++|+|||+
T Consensus 103 p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~t~ADi~ 182 (230)
T 4hz2_A 103 PPPGLARTRVHEWLFFEQYSHEPYIAVARYLKSWLRQAHLHEARLADCATRGAAALDVMEQHLAGEPWLVGEGPTIADLA 182 (230)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSTTSCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHHhhcccchHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHH
Confidence 677889999999999999988887654321 1221 14467889999999999 999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 133 IWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 133 l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
+++.|.++.... .....||+|.+|+++|.++|.|+++..
T Consensus 183 l~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~ 221 (230)
T 4hz2_A 183 LFAYTHRAEEAD---FDLAQWPAVLAWVDRVAALPGINLIPP 221 (230)
T ss_dssp HHHHHTTGGGGT---CCGGGSHHHHHHHHHHHTSTTCCCCCC
T ss_pred HHHHHHHHHhcC---CChhhChHHHHHHHHHHcCccccccCc
Confidence 999999864332 236889999999999999999987654
|
| >1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=213.92 Aligned_cols=169 Identities=18% Similarity=0.304 Sum_probs=141.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 79 (209)
T 1pn9_A 1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKLNPQHCIPTLV-DNGFALWESRAIQIYLAEKYGKD 79 (209)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSSEEE-ETTEEEESHHHHHHHHHHHHCCC
T ss_pred CeEEeCCCCccHHHHHHHHHHcCCCcEEEEecccCCCcCCHHHHhhCCCCCCCEEE-ECCEEEEeHHHHHHHHHHhCCCC
Confidence 799999999999999999999999999999987431 268999999997 78999999999999985
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CC----CCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhH
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFD----NP----KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g----~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l 133 (1175)
|.++.+++.+++|+.|..+.+.+.+...+. .+ ....+.+.+.|+.||++|+ ++||+|+++|+|||++
T Consensus 80 ~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~~ 159 (209)
T 1pn9_A 80 DKLYPKDPQKRAVVNQRLYFDMGTLYQRFADYHYPQIFAKQPANPENEKKMKDAVGFLNTFLEGQEYAAGNDLTIADLSL 159 (209)
T ss_dssp TTSSCCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTCSBTTBSSCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCceecCCCCCHHHHHH
Confidence 456778999999999988777776543321 11 1224578899999999999 9999999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhcC-HHHHHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKL-PQVQKAL 173 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~-P~~~~~l 173 (1175)
++.+.++.... .....||+|.+|+++|.++ |.++...
T Consensus 160 ~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~r~p~~~~~~ 197 (209)
T 1pn9_A 160 AATIATYEVAG---FDFAPYPNVAAWFARCKANAPGYALNQ 197 (209)
T ss_dssp HHHHHHHHHHT---CCCTTCHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHhcC---CChhhChhHHHHHHHHHHhCcchhhhH
Confidence 99999865432 2357899999999999995 9987543
|
| >1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=215.23 Aligned_cols=173 Identities=18% Similarity=0.278 Sum_probs=144.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++.+. .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 3 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 81 (209)
T 1axd_A 3 MKLYGAVMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQ-DGDLYLFESRAICKYAARKNKPE 81 (209)
T ss_dssp EEEESCTTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEE-ETTEEEESHHHHHHHHHHHHCGG
T ss_pred eEEEeCCCCchHHHHHHHHHhcCCCCEEEeccccccCcCChHHHHhCcCCCCCeEE-ECCEEEecHHHHHHHHHHhcCcc
Confidence 689999999999999999999999999999987542 278999999997 68999999999999985
Q ss_pred --CC-ChHHHHHHHHHHHHHhhhchhhhhhhhc-------CCC--------CchHHHHHHHHHHHHHhc-CCcccCCCCC
Q psy7266 67 --KF-DTKNESAINQWLEWESVELFPSVLSFFD-------NPK--------VLPDNLKTKLNVLNEAIS-NSFLIENSTT 127 (1175)
Q Consensus 67 --p~-~~~~~a~v~~wl~~~~~~l~p~~~~~~~-------~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lT 127 (1175)
|. ++.+++.+++|+.|..+.+.+.+..+++ .|. ...+.+.+.|+.||++|+ ++||+|+++|
T Consensus 82 L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 161 (209)
T 1axd_A 82 LLREGNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKCKYLAGDFLS 161 (209)
T ss_dssp GGTTTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeCCCCCC
Confidence 55 7789999999999998888776543321 021 123467889999999999 9999999999
Q ss_pred ccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 128 VADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 128 lADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+|||++++.+.++..... ......||+|.+|+++|.++|.+++++++
T Consensus 162 ~ADi~l~~~l~~~~~~~~-~~~~~~~p~l~~w~~r~~~~p~~~~~~~~ 208 (209)
T 1axd_A 162 LADLNHVSVTLCLFATPY-ASVLDAYPHVKAWWSGLMERPSVQKVAAL 208 (209)
T ss_dssp HHHHTTHHHHHHHTTSGG-GGGGGGCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCc-hhhhccCchHHHHHHHHHhCHHHHHHhcC
Confidence 999999999998643221 12457899999999999999999998764
|
| >3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=218.36 Aligned_cols=179 Identities=11% Similarity=0.075 Sum_probs=146.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------C
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS---------K 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---------p 67 (1175)
|+||+++.||++++++++|.++|++|+.+.++... ..+||.|+||+|+.+|+. |+||.+|++||. |
T Consensus 3 ~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~P~g~vP~L~~~~~~-l~eS~aI~~yL~~~~~~~~L~p 81 (229)
T 3lxz_A 3 LKLYGFSVSNYYNMVKLALLEKGLTFEEVTFYGGQAPQALEVSPRGKVPVLETEHGF-LSETSVILDYIEQTQGGKALLP 81 (229)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEEEECCCCSCHHHHTTSTTSCSCEEEETTEE-EESHHHHHHHHHHHCCSSCCSC
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCCCEEEecCCCCCHHHHhhCCCCCcCeEEeCCce-eecHHHHHHHHHhcCCCCCCCC
Confidence 68999999999999999999999999999986432 227899999999865555 999999999985 5
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhc----CCC-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFD----NPK-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWT 135 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~ 135 (1175)
.++.+++.+++|+.|..+.+.+.+..++. ... ...+.+...|+.||++|. ++||+|+++|+|||++++
T Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~ 161 (229)
T 3lxz_A 82 ADPFGQAKVRELLKEIELYIELPARTCYAESFFGMSVEPLIKEKARADLLAGFATLKRNGRFAPYVAGEQLTLADLMFCF 161 (229)
T ss_dssp SSHHHHHHHHHHHHHHHHHTHHHHHTTHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCSSBTTBSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCEeeCCCCCHHHHHHHH
Confidence 67889999999999999888776554332 111 124567889999999999 999999999999999999
Q ss_pred HHHHHhh---CCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHHHHHh
Q psy7266 136 CVYPLLS---DSKVRPLLSSYTNITPWYDRISKLPQVQKALKTWTEVL 180 (1175)
Q Consensus 136 ~L~~~~~---~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~~~~~ 180 (1175)
.|.++.. ..........||+|.+|+++|.++|.+++++.+....+
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~ 209 (229)
T 3lxz_A 162 SVDLANAVGKKVLNIDFLADFPQAKALLQLMGENPHMPRILADKEASM 209 (229)
T ss_dssp HHHHHHHHHHHHTSCCGGGGCHHHHHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccCcchhhhChHHHHHHHHHHhChhHHHHHhhHHHHH
Confidence 9988642 11112335789999999999999999999998874333
|
| >1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-22 Score=214.87 Aligned_cols=170 Identities=16% Similarity=0.242 Sum_probs=142.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 3 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 81 (218)
T 1r5a_A 3 TVLYYLPASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMD-DHGLVLWESRVILSYLVSAYGKD 81 (218)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEE-ETTEEEECHHHHHHHHHHHHCCS
T ss_pred EEEEeCCCChhHHHHHHHHHHcCCCCeEEecCcccccccCHHHHhhCCCCCcCEEE-ECCEEEEcHHHHHHHHHHHcCCC
Confidence 589999999999999999999999999999987531 278999999997 88999999999999985
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CCC----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhH
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFD----NPK----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l 133 (1175)
|.++.+++.+++|+.|..+.+.+.+..++. .+. ...+.+.+.|+.||++|+ ++||+|+++|+|||++
T Consensus 82 ~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l 161 (218)
T 1r5a_A 82 ENLYPKDFRSRAIVDQRLHFDLGTLYQRVVDYYFPTIHLGAHLDQTKKAKLAEALGWFEAMLKQYQWSAANHFTIADIAL 161 (218)
T ss_dssp SCSSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTSSSSSSSSCCHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhccCccccCCCCCHHHHHH
Confidence 456778999999999998888776554332 111 224578899999999999 9999999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhcC-HHH-H-HHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKL-PQV-Q-KALK 174 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~-P~~-~-~~l~ 174 (1175)
++.|.++.... .....||+|.+|+++|.++ |.+ + ++..
T Consensus 162 ~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~~p~~q~~~~~~ 202 (218)
T 1r5a_A 162 CVTVSQIEAFQ---FDLHPYPRVRAWLLKCKDELEGHGYKEINE 202 (218)
T ss_dssp HHHHHHHHHTT---CCCTTCHHHHHHHHHHHHHHGGGTHHHHHH
T ss_pred HHHHHHHHhCC---CChhhCchHHHHHHHHHHhCCCcchhhhcH
Confidence 99999875432 2357899999999999999 999 5 4443
|
| >1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=212.92 Aligned_cols=172 Identities=10% Similarity=0.074 Sum_probs=142.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCCh
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----RLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFDT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~~ 70 (1175)
|+||+++.||++++++++|+++|++|+.+.+++.+. .+||.|+||+|+ +||.+|+||.+|++||. |.++
T Consensus 3 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~L~p~~~ 81 (208)
T 1tu7_A 3 YKLTYFSIRGLAEPIRLFLVDQDIKFIDDRIAKDDFSSIKSQFQFGQLPCLY-DGDQQIVQSGAILRHLARKYNLNGENE 81 (208)
T ss_dssp EEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGGSTTTGGGSTTSCSCEEE-ETTEEEESHHHHHHHHHHHTTCSCSSH
T ss_pred cEEEEcCCCcchHHHHHHHHHcCCCceEEEEcHHHHHHhccCCCCCCCCEEE-ECCEEEEcHHHHHHHHHHHcCCCCCCH
Confidence 689999999999999999999999999999987542 378999999997 78999999999999985 7788
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhcCC-C----CchHH-HHHHHHHHHHHhc-CC----cccCCCCCccchhHHHHHHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFDNP-K----VLPDN-LKTKLNVLNEAIS-NS----FLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~~g-~----~~~~~-l~~~L~~Le~~L~-~~----fLvG~~lTlADi~l~~~L~~ 139 (1175)
.+++++++|+++.. .+.+.+..+++.. . ...+. +.+.|+.||++|. ++ ||+|+++|+|||++++.|.+
T Consensus 82 ~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~g~~~l~G~~~t~ADi~l~~~l~~ 160 (208)
T 1tu7_A 82 METTYIDMFCEGVR-DLHVKYTRMIYMAYETEKDPYIKSILPGELAKFEKLLATRGNGRNLILGDKISYADYALFEELDV 160 (208)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHHHHHHHTTTGGGSSBTTBSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEeCCCCcHHHHHHHHHHHH
Confidence 89999999999874 5555544433211 0 11234 7889999999999 76 99999999999999999998
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+..... .....||+|.+|+++|.++|.+++++..-
T Consensus 161 ~~~~~~--~~~~~~p~l~~w~~~i~~~p~~~~~~~~~ 195 (208)
T 1tu7_A 161 HQILDP--HCLDKFPLLKVFHQRMKDRPKLKEYCEKR 195 (208)
T ss_dssp HHHHCT--TTTTTCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHhcCh--hhhhcCcHHHHHHHHHHcCHHHHHHHhcC
Confidence 653322 24578999999999999999999988754
|
| >4iel_A Glutathione S-transferase, N-terminal domain PROT; GST, glutathione S-transferase, enzyme function initiative, structural genomics; HET: GSH; 1.60A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=218.94 Aligned_cols=170 Identities=19% Similarity=0.276 Sum_probs=142.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++|+++|.++|++|+.+.+++.. ..+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 24 ~~Ly~~~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 102 (229)
T 4iel_A 24 LHILGKIPSINVRKVLWLCTELNLPFEQEDWGAGFRTTNDPAYLALNPNGLVPVIK-DDGFVLWESNTIIRYLANRYGGD 102 (229)
T ss_dssp EEEESCTTCHHHHHHHHHHHHHTCCEEEECCC-------CHHHHTTCTTCCSCEEE-ETTEEEECHHHHHHHHHHHHCCT
T ss_pred EEEecCCCCcchHHHHHHHHHCCCCcEEEEecCCcCCcCCHHHHhcCCCCCCCEEE-ECCEEEEeHHHHHHHHHHhcCCC
Confidence 58999999999999999999999999999998743 1278999999997 58999999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CC--C-------CchHHHHHHHHHHHHHhc-C-CcccCCCCCc
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSVLSFFD----NP--K-------VLPDNLKTKLNVLNEAIS-N-SFLIENSTTV 128 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g--~-------~~~~~l~~~L~~Le~~L~-~-~fLvG~~lTl 128 (1175)
|.++.+++.+++|+.|....+.+.+..++. .. . ...+.+.+.|+.||++|. + +||+|+++|+
T Consensus 103 ~L~p~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~g~fl~G~~~t~ 182 (229)
T 4iel_A 103 ALYPAEPQARARVDQWIDWQGSDLNRSWVGAFLGLVRKSPEHQDPAAIAQSIAGWTKHMQVLNAQLEATGAFVAGDHFTL 182 (229)
T ss_dssp TTSCCSHHHHHHHHHHHHHHHHTHHHHTHHHHHHHTCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSSSCCT
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCcCcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEecCCCCCH
Confidence 667889999999999998888877655432 11 1 123467889999999999 5 9999999999
Q ss_pred cchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 129 ADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 129 ADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
|||++++.|.++.... .....||+|.+|+++|.++|.++++++
T Consensus 183 ADi~l~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~l~ 225 (229)
T 4iel_A 183 ADIPIGLSVNRWFGTP---FEHPDFPAAKRYIERLATREGFKQYAG 225 (229)
T ss_dssp THHHHHHHHHHHHTSC---SCCCCCHHHHHHHHHHTTSHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCC---CCcccChhHHHHHHHHHcCHHHHHHHh
Confidence 9999999999865432 236789999999999999999998764
|
| >1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET: CIT; 2.02A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=215.33 Aligned_cols=173 Identities=12% Similarity=0.172 Sum_probs=145.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 11 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~L~ 89 (213)
T 1yy7_A 11 MTLFSGPTDIFSHQVRIVLAEKGVSVEIEQVEADNLPQDLIDLNPYRTVPTLV-DRELTLYESRIIMEYLDERFPHPPLM 89 (213)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCEEEEECCTTSCCHHHHHHCTTCCSSEEE-ETTEEEESHHHHHHHHHHHCCSSCCS
T ss_pred eEEEcCCCChhHHHHHHHHHHcCCCCeEEeCCcccCcHHHHHHCCCCCCCEEE-ECCEEEecHHHHHHHHHHhCCCCCCC
Confidence 589999999999999999999999999999987542 278999999997 78899999999999985
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCC----CCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHh
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNP----KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLL 141 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g----~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~ 141 (1175)
|.++.+++.+++|+.|..+.+.+.+..++... ......+.+.|+.||++|. ++||+|+++|+|||++++.|.++.
T Consensus 90 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~ADi~l~~~l~~~~ 169 (213)
T 1yy7_A 90 PVYPVARGSSRLMMHRIEHDWYSLLYKIEQGNAQEAEAARKQLREELLSIAPVFNETPFFMSEEFSLVDCYLAPLLWRLP 169 (213)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTHHHHCSBTTBSSCCHHHHHHHHHHHTGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeCCCCCCHHHHHHHHHHHHHH
Confidence 56678899999999999888877665543211 1123567889999999999 999999999999999999998864
Q ss_pred hCCCCCCCc-ccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 142 SDSKVRPLL-SSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 142 ~~~~~~~~~-~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.... ... ..||+|.+|+++|.++|.+++++...
T Consensus 170 ~~~~--~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (213)
T 1yy7_A 170 VLGI--EFTGAGSKELKGYMTRVFERDAFLASLTEA 203 (213)
T ss_dssp GGTC--CCCSTTHHHHHHHHHHHHTSHHHHHHCCHH
T ss_pred HcCC--CcccccCHHHHHHHHHHhCCHHHHHHhhhH
Confidence 3221 222 68999999999999999999987665
|
| >1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=210.30 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=142.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----cc--CCCCcccEEEeCCCcEEeCHHHHHHHHc------CC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----RL--LLSKTVPVLELDDGSQLFSANQSCLYLS------KF 68 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----~~--~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~ 68 (1175)
|+||+++.||++++++++|+++|++|+.+.++.... .+ ||.|+||+|+ +||.+|+||.+|++||. |.
T Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~l~p~ 82 (207)
T 1zl9_A 4 YKLTYFNGRGAGEVSRQIFAYAGQQYEDNRVTQEQWPALKETCAAPFGQLPFLE-VDGKKLAQSHAIARFLAREFKLNGK 82 (207)
T ss_dssp EEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTTHHHHHHTTCSTTSCSCEEE-ETTEEEECHHHHHHHHHHHTTCSCS
T ss_pred eEEEEcCCCchHHHHHHHHHHcCCCceEEEecHHHHHHHhhccCCCCCCCCEEE-ECCEEEeeHHHHHHHHHHHcCCCCC
Confidence 589999999999999999999999999999986431 37 9999999997 68999999999999985 77
Q ss_pred ChHHHHHHHHHHHHHhhhchhhhhhhhc--CC--CCc-----hHH----HHHHHHHHHHHhc-C--CcccCCCCCccchh
Q psy7266 69 DTKNESAINQWLEWESVELFPSVLSFFD--NP--KVL-----PDN----LKTKLNVLNEAIS-N--SFLIENSTTVADIC 132 (1175)
Q Consensus 69 ~~~~~a~v~~wl~~~~~~l~p~~~~~~~--~g--~~~-----~~~----l~~~L~~Le~~L~-~--~fLvG~~lTlADi~ 132 (1175)
++.+++++++|+.+.. .+.+.+..++. .+ ... .+. +.+.|+.||++|. + +||+|+++|+|||+
T Consensus 83 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~ 161 (207)
T 1zl9_A 83 TAWEEAQVNSLADQYK-DYSSEARPYFYAVMGFGPGDVETLKKDIFLPAFEKFYGFLVNFLKASGSGFLVGDSLTWIDLA 161 (207)
T ss_dssp SHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCSCHHHHHHHTHHHHHHHHHHHHHHHHHHHCSSSSSTTSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHhhCcccccHHHHHHHHhccchhhhHHHHHHHHHHHHhCCCCEEeCCCccHHHHH
Confidence 8889999999999987 46565544432 11 111 123 7889999999999 6 99999999999999
Q ss_pred HHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 133 IWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 133 l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+++.|.++..... . ...||+|.+|+++|.++|.+++++...
T Consensus 162 ~~~~l~~~~~~~~--~-~~~~p~l~~w~~~~~~~p~~~~~~~~~ 202 (207)
T 1zl9_A 162 IAQHSADLIAKGG--D-FSKFPELKAHAEKIQAIPQIKKWIETR 202 (207)
T ss_dssp HHHHHHHHHHTTC--C-CTTCHHHHHHHHHHHHSHHHHHHHHHS
T ss_pred HHHHHHHHHHhCC--C-cccChHHHHHHHHHHcCHHHHHHHHhC
Confidence 9999998754332 2 678999999999999999999988653
|
| >3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A {Methylococcus capsulatus} PDB: 3uap_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-22 Score=214.80 Aligned_cols=172 Identities=23% Similarity=0.271 Sum_probs=147.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.+ +++++|++|.++|++|+.+.+++.+. .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 3 ~~Ly~~~~s-~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~eS~aI~~YL~~~~~~ 81 (227)
T 3uar_A 3 MKLYYFPGA-CSLAPHIVLREAGLDFELENVDLGTKKTGSGADFLQVNPKGYVPALQLDDGQVLTEDQVILQYLADLKPE 81 (227)
T ss_dssp EEEEECTTS-TTHHHHHHHHHHTCCEEEEEEETTTTEETTCCBHHHHCTTCCSCEEECTTCCEEECHHHHHHHHHHHCGG
T ss_pred EEEecCCCc-chHHHHHHHHHcCCCceEEEeccCcCcccCCHHHHHhCCCCCCCeEEECCCCEEecHHHHHHHHHHhCCC
Confidence 689999987 59999999999999999999987652 168999999998778999999999999985
Q ss_pred ----C-CChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc--CCcccCCCCCccchhH
Q psy7266 67 ----K-FDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 ----p-~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~l 133 (1175)
| .++.+++.+++|+.|..+.+.+.+..++..+. ...+.+.+.|+.||++|. ++||+|+++|+|||++
T Consensus 82 ~~L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~fl~G~~~t~ADi~l 161 (227)
T 3uar_A 82 SGLMPPSGTFERYRLLEWLAFISTEIHKTFGPFWNPESPEASKQIALGLLSRRLDYVEDRLEAGGPWLMGDRYSVADAYL 161 (227)
T ss_dssp GCSSCCTTCSHHHHHHHHHHHHHHHTTGGGTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSBTTBSSCCHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHccCCCccCCCCCCHHHHHH
Confidence 5 57788999999999998888887766554221 224567899999999997 8999999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++.+.++.... .....||+|.+|+++|.++|.+++++.+-
T Consensus 162 ~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 201 (227)
T 3uar_A 162 STVLGWCEYLK---IDLSKWPRILAYLERNQARPAVQAAMKAE 201 (227)
T ss_dssp HHHHTHHHHTT---CCCTTCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCcccChHHHHHHHHHHcCHHHHHHHHHc
Confidence 99999876442 23578999999999999999999998875
|
| >4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-22 Score=219.09 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=145.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCC-----cEEeCHHHHHHHHc-
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDG-----SQLFSANQSCLYLS- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG-----~~l~eS~aI~~YL~- 66 (1175)
|+||+++ ||++++++++|.++|++|+.+.+++... .+||.|+||+|+.+|| .+|+||.||++||.
T Consensus 23 ~~Ly~~~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~dG~~~~l~eS~aI~~yL~~ 101 (244)
T 4ikh_A 23 IQLYSLP-TPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVSPNNKIPAILDPHGPGDQPLALFESGAILIYLAD 101 (244)
T ss_dssp EEEEECS-SHHHHHHHHHHHHHTCCEEEEECCTTTTTTSSHHHHTTCTTSCSCEEEETTCGGGCCEEEESHHHHHHHHHH
T ss_pred eEEEeCC-CCChHHHHHHHHHcCCCceEEEecCCCCCcCChHHHhcCCCCCCCEEEecCCCCCCceeEEcHHHHHHHHHh
Confidence 5899999 9999999999999999999999997642 2789999999987654 79999999999985
Q ss_pred ------CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CC----C-----CchHHHHHHHHHHHHHhc-CCcccCCCC
Q psy7266 67 ------KFDTKNESAINQWLEWESVELFPSVLSFFD----NP----K-----VLPDNLKTKLNVLNEAIS-NSFLIENST 126 (1175)
Q Consensus 67 ------p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g----~-----~~~~~l~~~L~~Le~~L~-~~fLvG~~l 126 (1175)
|.++.+++.+++|+.|..+.+.+.+....+ .+ . ...+.+.+.|+.||++|. ++||+|+++
T Consensus 102 ~~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~Gd~~ 181 (244)
T 4ikh_A 102 KSGQLLAQESAARYETIQWLMFQMGGIGPMFGQVGFFNKFAGREYEDKRPLERYVNEAKRLLGVLDKHLGGREWIMGERY 181 (244)
T ss_dssp HHTCSSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSGGGGCSCCHHHHHHHHHHHHHHHHHHHHHTTCSBTBBTBC
T ss_pred hCCCcCCCCHHHHHHHHHHHHHHHhcchHHHhhhhhhhhccCccccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCC
Confidence 678889999999999999888876543211 11 1 123467888999999999 999999999
Q ss_pred CccchhHHHHHHHHhhCCC--CCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 127 TVADICIWTCVYPLLSDSK--VRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 127 TlADi~l~~~L~~~~~~~~--~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
|+|||++++.|.++..... .......||+|.+|+++|.++|.|++++...
T Consensus 182 t~ADi~l~~~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 233 (244)
T 4ikh_A 182 TIADIATFPWIRNLIGFYEAGELVGIDNFPEVKRVLAKFVARPAVIRGLEIP 233 (244)
T ss_dssp CHHHHHHHHHHHHHHTTTCCTTTTTGGGCHHHHHHHHHHTTSHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHhhhcccccCCcccChHHHHHHHHHHcCHHHHHHhhcc
Confidence 9999999999998753221 1234578999999999999999999987643
|
| >1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-22 Score=211.52 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=139.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCCh
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFDT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~~ 70 (1175)
|+||+++.||++++++++|.++|++|+.+.++..+ ..+||.|+||+|+ +||.+|+||.+|++||. |.++
T Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~l~p~~~ 82 (206)
T 1tw9_A 4 YKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLE-VDGQQLAQSQAICRYLAKTFGFAGATP 82 (206)
T ss_dssp EEEEEESSSGGGHHHHHHHHHTTCCCEEEEECHHHHGGGGGGSTTSCSCEEE-ETTEEEECHHHHHHHHHHHHTCSCSSH
T ss_pred eEEEEcCCCccHHHHHHHHHHcCCCceEEEeCHHHHHHHcccCCCCCCCEEE-ECCEEEecHHHHHHHHHHHcCCCCCCH
Confidence 58999999999999999999999999999998543 2378999999997 68999999999999985 7788
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhcCCC----C-----chHHH----HHHHHHHHHHhc-C--CcccCCCCCccchhHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFDNPK----V-----LPDNL----KTKLNVLNEAIS-N--SFLIENSTTVADICIW 134 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~~g~----~-----~~~~l----~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~ 134 (1175)
.+++.+++|+.+... +.+.+..++.... . ..+.+ .+.|+.||++|+ + +||+|+++|+|||+++
T Consensus 83 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 161 (206)
T 1tw9_A 83 FESALIDSLADAYTD-YRAEMKTYYYTALGFMTGDVDKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVA 161 (206)
T ss_dssp HHHHHHHHHHHHHHH-HHHHC---------------CHHHHHTHHHHHHHHHHHHHHHHHHCTTSSSSTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcCcccccHHHHHHHHhhhccccchHHHHHHHHHHHhCCCCeEECCCCcHHHHHHH
Confidence 899999999999874 5555444332110 0 12345 889999999999 7 9999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+.|.++.... ......||+|.+|+++|.++|.+++++...
T Consensus 162 ~~l~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 201 (206)
T 1tw9_A 162 EHVADMTNRV--PEYIEGFPEVKAHMERIQQTPRIKKWIETR 201 (206)
T ss_dssp HHHHHHHHHC--GGGGTTCHHHHHHHHHHHTSHHHHHHHHHS
T ss_pred HHHHHHHHhC--cchhhcCchHHHHHHHHHcCHHHHHHHHcC
Confidence 9999865422 124578999999999999999999988653
|
| >3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-22 Score=218.25 Aligned_cols=174 Identities=16% Similarity=0.193 Sum_probs=144.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++.+ ..+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 24 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~L~ 103 (239)
T 3q18_A 24 IRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKPEWYYTKHPFGHIPVLETSQSQLIYESVIACEYLDDAYPGRKLF 103 (239)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEEEEBCSSSCCGGGGGTSTTCCSCEEECTTCCEECSHHHHHHHHHHHSCSSCCS
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEEecCcccCCHHHHhcCCCCCCCEEEeCCCceeecHHHHHHHHHHhCCCCCCC
Confidence 58999999999999999999999999999998764 2378999999998669999999999999985
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhc---CC---CCchHHHHHHHHHHHHHhc-C--CcccCCCCCccchhHHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFD---NP---KVLPDNLKTKLNVLNEAIS-N--SFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g---~~~~~~l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~~~L 137 (1175)
|.++.+++.+++|+++... +.+.+...+. .+ ....+.+.+.|+.||++|. + +||+|+++|+|||++++.|
T Consensus 104 p~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~ADi~l~~~l 182 (239)
T 3q18_A 104 PYDPYERARQKMLLELFSK-VPHLTKECLVALRSGRESTNLKAALRQEFSNLEEILEYQNTTFFGGTSISMIDYLLWPWF 182 (239)
T ss_dssp CSSHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTCSBTTBSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-hhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHH
Confidence 5678899999999998876 4444443222 11 1235578999999999999 5 9999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.++..... ......||+|.+|+++|.++|.+++++...
T Consensus 183 ~~~~~~~~-~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 220 (239)
T 3q18_A 183 ERLDVYGI-LDCVSHTPALRLWISAMKWDPTVSALLMDK 220 (239)
T ss_dssp HTHHHHTC-GGGGTTCHHHHHHHHHHHTSHHHHHHCCCH
T ss_pred HHHHHcCC-chhhccCcHHHHHHHHHHhChHHHHHcCCH
Confidence 98753322 123578999999999999999999987644
|
| >1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=209.29 Aligned_cols=172 Identities=16% Similarity=0.172 Sum_probs=140.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFD 69 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~ 69 (1175)
|+||+++.||+++++|++|+++|++|+.+.+++.. ..+||.|+||+|+ +||.+|+||.+|++||. |.+
T Consensus 4 ~~Ly~~~~s~~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~l~p~~ 82 (208)
T 1yq1_A 4 YKLTYFFFRGLGEPIRLLFHLAGVQFEEVRMNPDQTWLDIKDSTPMKQLPVLN-IDGFELPQSGAILRYLARKFGFAGKT 82 (208)
T ss_dssp EEEEEESSSTTTHHHHHHHHHHTCCCEEEEECTTTCCHHHHHTSTTSCSCEEE-ESSCEECCHHHHHHHHHHHHTCSCSS
T ss_pred eEEEEeCCCCchHHHHHHHHHcCCCeEEEEecccchhhhhhccCCCCCCCEEE-ECCEEEeeHHHHHHHHHHhcCcCCCC
Confidence 58999999999999999999999999999998622 1378999999997 68899999999999985 778
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhc--CC-C--C---------chHHHHHHHHHHHHHhc-C--CcccCCCCCccchh
Q psy7266 70 TKNESAINQWLEWESVELFPSVLSFFD--NP-K--V---------LPDNLKTKLNVLNEAIS-N--SFLIENSTTVADIC 132 (1175)
Q Consensus 70 ~~~~a~v~~wl~~~~~~l~p~~~~~~~--~g-~--~---------~~~~l~~~L~~Le~~L~-~--~fLvG~~lTlADi~ 132 (1175)
+.+++.+++|+.+.. .+.+.+..++. .+ . . ....+.+.|+.||++|. + +||+|+++|+|||+
T Consensus 83 ~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~ 161 (208)
T 1yq1_A 83 PEEEAWVDAVHDLFK-DFLAEFKKFAAERRSGKSAEEVEKFRSEFFLPARNTYFNILNGLLEKSNSGFLIGSDITFADLV 161 (208)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSSSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcccchHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCCCCeeeCCCccHHHHH
Confidence 889999999999985 45555544332 11 0 0 01233449999999998 5 69999999999999
Q ss_pred HHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 133 IWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 133 l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+++.|.++.... ......||+|.+|+++|.++|.++++++..
T Consensus 162 ~~~~l~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (208)
T 1yq1_A 162 VVDNLLTLKNYG--LFDESEFTKLAALREKVNSYPGIKEYIAKR 203 (208)
T ss_dssp HHHHHHHHHHTT--CCCTTTTHHHHHHHHHHHTSTTHHHHHHHS
T ss_pred HHHHHHHHHHhC--cchhhcCchHHHHHHHHHhChhHHHHHHcC
Confidence 999999875432 224578999999999999999999988653
|
| >2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-22 Score=209.97 Aligned_cols=170 Identities=19% Similarity=0.279 Sum_probs=142.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc--------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS-------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~-------- 66 (1175)
|+||+++.+ ++++++++|.++|++|+.+.+++.+ ..+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 3 ~~Ly~~~~s-~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~~ 80 (207)
T 2x64_A 3 MKLYIMPGA-CSLADHILLRWSGSSFDLQFLDHQSMKAPEYLALNPSGAVPALQ-VGDWVLTQNAAILNYITDIAPAERG 80 (207)
T ss_dssp EEEEECTTS-TTHHHHHHHHHHTCCEEEEECCTTTTSSHHHHTTCTTCCSCEEE-ETTEEECCHHHHHHHHHHHSCGGGC
T ss_pred EEEEcCCCC-cHHHHHHHHHHcCCCcceEEecccccCChhHHhcCCCCcCCeEe-ECCEEEeeHHHHHHHHHHhCCchhc
Confidence 689999975 6999999999999999999998752 2378999999997 89999999999999995
Q ss_pred --CC-ChHHHHHHHHHHHHHhhhchhhhhhhhcC----CC---------CchHHHHHHHHHHHHHhc-CCcccCCCCCcc
Q psy7266 67 --KF-DTKNESAINQWLEWESVELFPSVLSFFDN----PK---------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVA 129 (1175)
Q Consensus 67 --p~-~~~~~a~v~~wl~~~~~~l~p~~~~~~~~----g~---------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlA 129 (1175)
|. ++.+++.+++|+.|..+.+.+.+..++.. +. ...+.+.+.|+.||++|+ ++||+|+++|+|
T Consensus 81 L~p~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~A 160 (207)
T 2x64_A 81 LSGDGSLKARAEINRWIAFSNSDVHPMYWALFGGTAYLQDPQMIARSQDNARQKLRVLYQRADAHLKHHNWLANGQRSGA 160 (207)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHTHHHHTGGGGTTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSSTTSCCHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHhccHHHHHHHhCccccCCchhhhHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHH
Confidence 33 67789999999999988888766544431 11 113457889999999999 999999999999
Q ss_pred chhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 130 DICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 130 Di~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
||++++.+.++.... .....||+|.+|+++|.++|.+++++..
T Consensus 161 Di~~~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 203 (207)
T 2x64_A 161 DAYLYVTLRWAKKVG---VDLSSLDALSAFFERMEADPGVQAALQA 203 (207)
T ss_dssp HHHHHHHHHHHHHHT---CCCTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CChhhCHHHHHHHHHHHcCHHHHHHHHh
Confidence 999999999875432 2357899999999999999999998764
|
| >1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=213.57 Aligned_cols=170 Identities=18% Similarity=0.264 Sum_probs=140.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++.+. .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 3 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 81 (211)
T 1gnw_A 3 IKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFE-DGDLKLFESRAITQYIAHRYENQ 81 (211)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEE-ETTEEEECHHHHHHHHHHHTTTS
T ss_pred eEEEeCCCCcchHHHHHHHHhcCCCcEEEEeccccccccCHHHHHhCCCCCCCEEE-ECCEEEeCHHHHHHHHHHHcCCC
Confidence 689999999999999999999999999999987531 278999999997 68999999999999985
Q ss_pred -----CCC---hHHHHHHHHHHHHHhhhchhhhhhhhc-------CCC--------CchHHHHHHHHHHHHHhc-CCccc
Q psy7266 67 -----KFD---TKNESAINQWLEWESVELFPSVLSFFD-------NPK--------VLPDNLKTKLNVLNEAIS-NSFLI 122 (1175)
Q Consensus 67 -----p~~---~~~~a~v~~wl~~~~~~l~p~~~~~~~-------~g~--------~~~~~l~~~L~~Le~~L~-~~fLv 122 (1175)
|.+ +.+++.+++|+.|..+.+.+.+..+++ .|. ...+.+.+.|+.||++|+ ++||+
T Consensus 82 ~~~L~p~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 161 (211)
T 1gnw_A 82 GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLA 161 (211)
T ss_dssp SSCCSCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSS
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 345 778999999999998888876554321 121 123467889999999999 99999
Q ss_pred CCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 123 ENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 123 G~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
|+++|+|||++++.+.++.... .......||+|.+|+++|.++|.++++
T Consensus 162 G~~~t~ADi~~~~~l~~~~~~~-~~~~~~~~p~l~~w~~~~~~~p~~~~~ 210 (211)
T 1gnw_A 162 GETFTLTDLHHIPAIQYLLGTP-TKKLFTERPRVNEWVAEITKRPASEKV 210 (211)
T ss_dssp SSSCCHHHHTTHHHHHHHTTSG-GGHHHHTSHHHHHHHHHHHSSHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcC-cchhhccCchHHHHHHHHHcCchhhhh
Confidence 9999999999999999864321 112346899999999999999999864
|
| >1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=212.73 Aligned_cols=172 Identities=15% Similarity=0.131 Sum_probs=142.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccC-CCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLL-LSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~-P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.||++++|+++|.++|++|+.+.+++... .+| |+|+||+|+ +||.+|+||.||++||.
T Consensus 2 ~~L~y~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~-d~g~~l~eS~aI~~YL~~~~~l 80 (234)
T 1dug_A 2 PILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYI-DGDVKLTQSMAIIRYIADKHNM 80 (234)
T ss_dssp CEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEE-CSSCEEESHHHHHHHHHHHTTC
T ss_pred cEEEEcCCCCchHHHHHHHHHcCCCceEEEeCCCchhhHhhhccccCCCCCCCCEEE-ECCEEEecHHHHHHHHHHHcCC
Confidence 799999999999999999999999999999987421 245 999999997 88999999999999996
Q ss_pred -CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHH
Q psy7266 67 -KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 67 -p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
|.++.+++.+++|+.+.. .+.+.+..+++... ...+.+.+.|+.||++|. ++||+|+++|+|||++++.|.
T Consensus 81 ~p~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~G~~~T~ADi~l~~~l~ 159 (234)
T 1dug_A 81 LGGCPKERAEISMLEGAVL-DIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALD 159 (234)
T ss_dssp SCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHTTTCSBTTBSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHccCCeecCCCCCHHHHHHHHHHH
Confidence 678889999999998764 45555444433221 123467889999999999 999999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++..... .....||+|.+|+++|.++|.+++++...
T Consensus 160 ~~~~~~~--~~~~~~p~l~~w~~r~~~~p~~~~~~~~~ 195 (234)
T 1dug_A 160 VVLYMDP--MCLDAFPKLVCFKKRIEAIPQIDKYLKSS 195 (234)
T ss_dssp HHHHHCT--TTTTTCHHHHHHHHHHHHSHHHHHHHTST
T ss_pred HHHHhCh--hhhhcCcHHHHHHHHHHcCHHHHHHHhCC
Confidence 8654321 24578999999999999999999987643
|
| >3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-22 Score=215.74 Aligned_cols=171 Identities=16% Similarity=0.223 Sum_probs=146.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCc---------------c----cccCCCCcccEEEeCCCcEEeCHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVA---------------D----ARLLLSKTVPVLELDDGSQLFSANQS 61 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~---------------~----~~~~P~g~vP~L~~~dG~~l~eS~aI 61 (1175)
|+||+++.| ++++++++|.++|++|+.+.+++. . ..+||.|+||+|+ +||.+|+||.||
T Consensus 3 ~~Ly~~~~s-~~~~v~~~L~~~gi~ye~~~v~~~~~~~d~~~~e~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI 80 (225)
T 3lsz_A 3 LKIYGVYRS-RASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLE-EEGLILTESLAI 80 (225)
T ss_dssp CEEESCSSS-TTHHHHHHHHHHTCCCEEECCBCGGGSSCTTSTTCCSBTTCHHHHTTCTTCCSCEEE-ETTEEEESHHHH
T ss_pred EEEEeCCCC-chHHHHHHHHHcCCCcEEEEeecccccccccccccccccCCHHHHhhCcCCCCCeEE-ECCEEEEcHHHH
Confidence 689999999 999999999999999999999763 1 1278999999995 799999999999
Q ss_pred HHHHc--------CCChHHHHHHHHHHHHHhhhchhhhhhhhc---C--CC---------CchHHHHHHHHHHHHHhc-C
Q psy7266 62 CLYLS--------KFDTKNESAINQWLEWESVELFPSVLSFFD---N--PK---------VLPDNLKTKLNVLNEAIS-N 118 (1175)
Q Consensus 62 ~~YL~--------p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~--g~---------~~~~~l~~~L~~Le~~L~-~ 118 (1175)
++||. |.++.+++.+++|+.|..+.+.+.+..++. . +. ...+.+.+.|+.||++|. +
T Consensus 81 ~~yL~~~~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 160 (225)
T 3lsz_A 81 TLHIARTQGGQLGPRSEPEDALMVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIAIAAERLRRPLARLERHFAAE 160 (225)
T ss_dssp HHHHHHHHCGGGSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHTHHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99985 678889999999999999988887655432 1 11 123467889999999999 9
Q ss_pred CcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 119 SFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 119 ~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+||+|+++|+|||++++.|.++... ......||+|.+|+++|.++|.|++++...
T Consensus 161 ~~l~G~~~t~ADi~l~~~l~~~~~~---~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 215 (225)
T 3lsz_A 161 DYLVGGRFTVADLNLAETLRYGQAH---PALLEPFPAVAAWLDRCQSRPAFRLMMERR 215 (225)
T ss_dssp SSSSTTSCCHHHHHHHHHHHTTTTS---TTTTTTCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHHc---CCCcccChHHHHHHHHHHcCHHHHHHHhhc
Confidence 9999999999999999999986432 234688999999999999999999999876
|
| >1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=214.02 Aligned_cols=174 Identities=19% Similarity=0.290 Sum_probs=144.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---C--
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS---K-- 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p-- 67 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.+. .+||.|+||+|+ +||.+|+||.+|++||. +
T Consensus 3 ~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 81 (216)
T 1aw9_A 3 LKLYGMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALV-DGDEVLFESRAINRYIASKYASE 81 (216)
T ss_dssp EEEESCTTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEE-ETTEEEESHHHHHHHHHHHTCSS
T ss_pred eEEEecCCCccHHHHHHHHHHcCCccEEEecCccccccCCHHHHHhCCCCCcCEEE-ECCEEeeCHHHHHHHHHHHcCCC
Confidence 689999999999999999999999999999987531 278999999997 58899999999999996 4
Q ss_pred -----CChHHHHHHHHHHHHHhhhchhhhhhhhc-------CCC--------CchHHHHHHHHHHHHHhc-CCcccCCCC
Q psy7266 68 -----FDTKNESAINQWLEWESVELFPSVLSFFD-------NPK--------VLPDNLKTKLNVLNEAIS-NSFLIENST 126 (1175)
Q Consensus 68 -----~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-------~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~l 126 (1175)
.++.+++.+++|+.|..+.+.+.+..+++ .|. ...+.+.+.|+.||++|+ ++||+|+++
T Consensus 82 ~~~L~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 161 (216)
T 1aw9_A 82 GTDLLPATASAAKLEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVVDKHAEQLAKVLDVYEAHLARNKYLAGDEF 161 (216)
T ss_dssp SSCSSCTTSCHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSBTTBSSC
T ss_pred CCccccCHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhchhhcCCCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence 24567899999999998888776543321 121 123467889999999999 999999999
Q ss_pred CccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 127 TVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 127 TlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
|+|||++++.|.++..... ......||+|.+|+++|.++|.+++++...
T Consensus 162 t~ADi~~~~~l~~~~~~~~-~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 210 (216)
T 1aw9_A 162 TLADANHASYLLYLSKTPK-AGLVAARPHVKAWWEAIVARPAFQKTVAAI 210 (216)
T ss_dssp CHHHHTTHHHHHHHHTSTT-THHHHTSHHHHHHHHHHHHSHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhcCc-cchhhhChHHHHHHHHHHcChHHHHHhccc
Confidence 9999999999998654221 123568999999999999999999988754
|
| >2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=209.30 Aligned_cols=172 Identities=19% Similarity=0.183 Sum_probs=143.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCCh
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFDT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~~ 70 (1175)
|+||+++.||+++++|++|.++|++|+.+.++..+ ..+||.|+||+|+ +||.+|+||.+|++||. |.++
T Consensus 4 ~~Ly~~~~s~~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~l~p~~~ 82 (206)
T 2on7_A 4 YKLTYFAIRGAGECARQIFALADQEFEDVRLDKEQFAKVKPDLPFGQVPVLE-VDGKQLAQSLAICRYLARQFGFAGKST 82 (206)
T ss_dssp EEEEEESSSTTTHHHHHHHHHHTCCCEEEEECHHHHHHHGGGSSSSCSCEEE-ETTEEEECHHHHHHHHHHHHTCSCSSH
T ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeeEEEecHHHHHHhCcCCCCCCCCEEE-ECCEEEeeHHHHHHHHHHHhCCCCCCH
Confidence 58999999999999999999999999999998633 2378999999997 68999999999999985 7788
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhc--CCC--Cc-----hHH----HHHHHHHHHHHhc-C--CcccCCCCCccchhHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFD--NPK--VL-----PDN----LKTKLNVLNEAIS-N--SFLIENSTTVADICIW 134 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~--~g~--~~-----~~~----l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~ 134 (1175)
.+++.+++|+.+..+ +.+.+..++. .+. .. .+. +.+.|+.||++|. + +||+|+++|+|||+++
T Consensus 83 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~l~ 161 (206)
T 2on7_A 83 FDEAVVDSLADQYSD-YRVEIKSFFYTVIGMREGDVEQLKKEVLLPARDKFFGFITKFLKKSPSGFLVGDSLTWVDLLVS 161 (206)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSSCSCHHHHHHHTHHHHHHHHHHHHHHHHHTCTTSSSSTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhhhcCcchhhHHHHHHHHhccchhhHHHHHHHHHHHHHhCCCCEEecCCccHHHHHHH
Confidence 899999999999874 6665554433 111 11 123 7889999999999 7 9999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+.|.++.... ......||+|.+|+++|.++|.+++++...
T Consensus 162 ~~l~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 201 (206)
T 2on7_A 162 EHNATMLTFV--PEFLEGYPEVKEHMEKIRAIPKLKKWIETR 201 (206)
T ss_dssp HHHHHHHTTC--TTTTTTCHHHHHHHHHHHTSHHHHHHHHHS
T ss_pred HHHHHHHHhC--cchhhcCchHHHHHHHHHcChhHHHHHHhC
Confidence 9999875422 234578999999999999999999988653
|
| >2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=207.95 Aligned_cols=172 Identities=14% Similarity=0.188 Sum_probs=142.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCCh
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFDT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~~ 70 (1175)
|+||+++.||+++++|++|+++|++|+.+.++..+ ..+||.|+||+|+ +||.+|+||.+|++||. |.++
T Consensus 4 ~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~l~p~~~ 82 (206)
T 2on5_A 4 YKLTYFAGRGLAEPIRQIFALAGQKYEDVRYTFQEWPKHKDEMPFGQIPVLE-EDGKQLAQSFAIARYLSRKFGFAGKTP 82 (206)
T ss_dssp EEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTTGGGGGGGSTTSCSCEEE-ETTEEEESHHHHHHHHHHHHTCSCSSH
T ss_pred eEEEecCCCcchHHHHHHHHHcCCCceEEEecHHHHHHhccCCCCCCCCEEE-ECCEEEecHHHHHHHHHHHhCCCCCCH
Confidence 58999999999999999999999999999998643 2378999999997 68999999999999985 7788
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhc--CC--CCc-----hHH----HHHHHHHHHHHhc-C--CcccCCCCCccchhHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFD--NP--KVL-----PDN----LKTKLNVLNEAIS-N--SFLIENSTTVADICIW 134 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~--~g--~~~-----~~~----l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~ 134 (1175)
.+++.+++|+.+... +.+.+..++. .+ ... .+. +.+.|+.||++|. + +||+|+++|+|||+++
T Consensus 83 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 161 (206)
T 2on5_A 83 FEEALVDSVADQYKD-YINEIRPYLRVVAGVDQGDPEKLFKELLLPAREKFFGFMKKFLEKSKSGYLVGDSVTYADLCLA 161 (206)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTHHHHHHHHTSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHCSSSSSSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhCcchhhHHHHHHHHhccchhhhHHHHHHHHHHHHhCCCCEEeCCcccHHHHHHH
Confidence 899999999999874 5555544332 11 111 123 7889999999999 6 9999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+.|.++.... ......||+|.+|+++|.++|.++++++..
T Consensus 162 ~~l~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 201 (206)
T 2on5_A 162 EHTSGIAAKF--PSIYDGFPEIKAHAEKVRSIPALKKWIETR 201 (206)
T ss_dssp HHHHHHHTTC--GGGGTTCHHHHHHHHHHHTSHHHHHHHHHS
T ss_pred HHHHHHHhcC--cchhhhChHHHHHHHHHHcCHHHHHHHHcC
Confidence 9999875422 224578999999999999999999988653
|
| >2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=211.77 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=143.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.+. .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 82 (221)
T 2imi_A 4 LVLYTLHLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLD-DNGTIITESHAIMIYLVTKYGKD 82 (221)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEE-ETTEEEESHHHHHHHHHHHHCSS
T ss_pred eEEeeCCCCccHHHHHHHHHHcCCCceEEEccccccccCCHHHHhhCcCCCCCEEE-ECCEEEeeHHHHHHHHHHhcCCC
Confidence 589999999999999999999999999999987542 278999999995 78999999999999985
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CCC-----CchHHHHHHHHHHHHHhcCCcccCCCCCccchhH
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFD----NPK-----VLPDNLKTKLNVLNEAISNSFLIENSTTVADICI 133 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g~-----~~~~~l~~~L~~Le~~L~~~fLvG~~lTlADi~l 133 (1175)
|.++.+++.+++|+.|..+.+.+.+..++. .+. ...+.+.+.|+.||++|..+||+|+++|+|||++
T Consensus 83 ~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~l~G~~~t~ADi~l 162 (221)
T 2imi_A 83 DSLYPKDPVKQARVNSALHFESGVLFARMRFIFERILFFGKSDIPEDRVEYVQKSYELLEDTLVDDFVAGPTMTIADFSC 162 (221)
T ss_dssp STTSCCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHCSSSBTTBSSCCHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCccCCCCCCHHHHHH
Confidence 456778999999999998887776554321 221 2245678899999999966899999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
++.|.++.... ......||+|.+|+++|.++|.+++++..
T Consensus 163 ~~~l~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (221)
T 2imi_A 163 ISTISSIMGVV--PLEQSKHPRIYAWIDRLKQLPYYEEANGG 202 (221)
T ss_dssp HHHHHHHTTTT--TCCTTTCHHHHHHHHHHHTSTTHHHHTHH
T ss_pred HHHHHHHHhhc--CCCcccCchHHHHHHHHHcCCcHHHHHHH
Confidence 99999863212 13457899999999999999999998654
|
| >1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=211.72 Aligned_cols=172 Identities=14% Similarity=0.166 Sum_probs=140.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++..+ .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 9 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 87 (221)
T 1e6b_A 9 LKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALV-DGDVVINDSFAIIMYLDEKYPEP 87 (221)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEE-ETTEEEESHHHHHHHHHHHSCSS
T ss_pred eEEEecCCCCchHHHHHHHHHcCCCCEEEEecCCcccccCHHHHhhCCCCCCCEEE-ECCEEEeeHHHHHHHHHHhCCCc
Confidence 689999999999999999999999999999997531 278999999997 78999999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhhhh----hhc--CCC-----CchHHHHHHHHHHHHHhc---CCcccCCCCCcc
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSVLS----FFD--NPK-----VLPDNLKTKLNVLNEAIS---NSFLIENSTTVA 129 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~~~----~~~--~g~-----~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlA 129 (1175)
|.++.+++.+++|+.|..+.+.+.+.. ++. .+. ...+.+.+.|+.||++|. ++||+|+++|+|
T Consensus 88 ~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~A 167 (221)
T 1e6b_A 88 PLLPRDLHKRAVNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKHATGDEIYLA 167 (221)
T ss_dssp CSSCSCHHHHHHHHHHHHHHHHTTCC-------------------CCCCCHHHHHHHHHHHHHHTTSCSSBTTBSSCCHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhhcccccccHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEecCCCCCHH
Confidence 567789999999999988777664221 111 011 123568999999999998 389999999999
Q ss_pred chhHHHHHHHHhh-CCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 130 DICIWTCVYPLLS-DSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 130 Di~l~~~L~~~~~-~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
||++++.|.++.. .. .....||+|.+|+++|.++|.+++++...
T Consensus 168 Di~l~~~l~~~~~~~~---~~~~~~p~l~~w~~~i~~~p~~~~~~~~~ 212 (221)
T 1e6b_A 168 DLFLAPQIHGAINRFQ---INMEPYPTLAKCYESYNELPAFQNALPEK 212 (221)
T ss_dssp HHHHHHHHHHHHHHHC---CCCTTCHHHHHHHHHHTTCHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHhC---CCcccChHHHHHHHHHHcCHHHHHhCCcc
Confidence 9999999988654 22 23578999999999999999999877543
|
| >3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-22 Score=213.62 Aligned_cols=172 Identities=15% Similarity=0.135 Sum_probs=137.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--c--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--A--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS---- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---- 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++.. . .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 3 ~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~ 81 (222)
T 3niv_A 3 LILYDYFRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLD-INGQILSQSMAIIDYLEEIHP 81 (222)
T ss_dssp -CEEECTTCHHHHHHHHHHHHTTCCCCEEECCC-------------------CCSEEE-ETTEEEECHHHHHHHHHHHCC
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCcEEEEeccccccccccCHHHHhcCCCCCcCEEE-ECCEEeecHHHHHHHHHHhCC
Confidence 68999999999999999999999999999998765 1 268999999997 89999999999999985
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhhhhhh----c--CCCCc-------hHHHHHHHHHHHHHhc-C----CcccC
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSVLSFF----D--NPKVL-------PDNLKTKLNVLNEAIS-N----SFLIE 123 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~----~--~g~~~-------~~~l~~~L~~Le~~L~-~----~fLvG 123 (1175)
|.++.+++.+++|+.+....+.+.+...+ . .+... ...+.+.|+.||++|. + +||+|
T Consensus 82 ~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G 161 (222)
T 3niv_A 82 EMPLLPKDPFMKATLKSMALIVACDMHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEKLGALERDKPVCFG 161 (222)
T ss_dssp SSCSSCSSHHHHHHHHHHHHHHHHHTHHHHSHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSSSB
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCC
Confidence 56778999999999999888776543221 1 11111 2347889999999998 3 89999
Q ss_pred CCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 124 NSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 124 ~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+++|+|||++++.|.++.... .....||+|.+|+++|.++|.|++++...
T Consensus 162 ~~~t~ADi~l~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 211 (222)
T 3niv_A 162 SEVGLADVCLIPQVYNAHRFH---FDMASYPIINEINEYCLTLPAFHDAAPEA 211 (222)
T ss_dssp TSCCHHHHHHHHHHHHHHHTT---CCCTTCHHHHHHHHHHTTSHHHHTTSHHH
T ss_pred CCCcHHHHHHHHHHHHHHHcC---CCcccCccHHHHHHHHHcChHHHHhCcCC
Confidence 999999999999999875442 24678999999999999999999988765
|
| >3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=215.22 Aligned_cols=175 Identities=11% Similarity=0.055 Sum_probs=143.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc----------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS---------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---------- 66 (1175)
|+||+++.||++++|+++|.++|++|+.+.++... ..+||.|+||+|+.+|+. |+||.+|++||.
T Consensus 4 ~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~nP~g~vPvL~~~~~~-l~eS~aI~~YL~~~~~~~~~L~ 82 (242)
T 3ubk_A 4 IKLHGASISNYVNKVKLGILEKGLEYEQIRIAPSQEEDFLKISPMGKIPVLEMDGKF-IFESGAILEFLDTIFPQTPKLI 82 (242)
T ss_dssp EEEESCTTCHHHHHHHHHHHHHTCCEEEECCCCCCCHHHHTTSTTCCSCEEEETTEE-ECCHHHHHHHHHHHCCCSSCSS
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEEecCCccCHHHHhcCCCCCcCeEEECCce-EecHHHHHHHHHHhCCCCcCcC
Confidence 58999999999999999999999999999886543 237899999999865555 999999999996
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcC-CC-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDN-PK-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~-g~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
|.++.+++.+++|+.+..+.+.+.+..++.. .. ...+.+...|+.||++|. ++||+|+++|+|||++++.|
T Consensus 83 p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~fl~G~~~T~ADi~l~~~l 162 (242)
T 3ubk_A 83 PEDPWEAARVREISTIIETYLDIPARRIYLPAAKVSPEIVEEVHSTLVKGIKALQRVVRFSPYIAGNVFTLADCSGFAHL 162 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHCCCSSBTTBSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCCEeeCCCCCHHHHHHHHHH
Confidence 3467789999999999998887765554431 11 124467888999999999 99999999999999999999
Q ss_pred HHHhh---CCCCCCCccc-chhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 138 YPLLS---DSKVRPLLSS-YTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 138 ~~~~~---~~~~~~~~~~-~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.++.. .......... ||+|.+|+++|.++|.+++++.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~P~l~~w~~r~~~~p~~~~~~~~~ 205 (242)
T 3ubk_A 163 SVLDEELRPFYPNNHPLDLLNGWKEYFVFMKTKAGPALVEKDK 205 (242)
T ss_dssp HHHHHHHTTTCTTTCGGGGSTTHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHhhhccCcccchhhCHHHHHHHHHHHhCHHHHHHhhhH
Confidence 88652 1222233466 999999999999999999999876
|
| >2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=207.43 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=139.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCCh
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFDT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~~ 70 (1175)
|+||+++.||++++++++|+++|++|+.+.++... ..+||.|+||+|+ +||.+|+||.+|++||. |.++
T Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~l~p~~~ 82 (204)
T 2ws2_A 4 YKLTYFNGRGAAEIIRQVFVLAGQDYEDVRLTHEEWPKHKASMPFGQLPVLE-VDGKQLPQSVAIVRYLARKFGYAGKSA 82 (204)
T ss_dssp EEEEEESSSGGGHHHHHHHHHTTCCCEEEEECTTTGGGTGGGSTTSCSCEEE-ETTEEEESHHHHHHHHHHHHTCSCSSH
T ss_pred cEEEEeCCCchHHHHHHHHHHcCCCceEEEecHhhHHHhhhcCCCCCCCEEE-ECCEEeecHHHHHHHHHHHcCCCCCCH
Confidence 58999999999999999999999999999998643 2378999999997 68999999999999985 7788
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhcCCC----Cc-----hHH----HHHHHHHHHHHhc-C--CcccCCCCCccchhHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFDNPK----VL-----PDN----LKTKLNVLNEAIS-N--SFLIENSTTVADICIW 134 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~~g~----~~-----~~~----l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~ 134 (1175)
.+++.+++|+.+..+ +.+.+..++.... .. .+. +.+.|+.||++|. + +||+|+++|+|||+++
T Consensus 83 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 161 (204)
T 2ws2_A 83 WEEAVVDSIADQFKD-FLNEVRPYFKVLLGMDQGDLKALEKDVFEPARQKFFTIVTKILKENKTGYLVGDSLTFADLYVA 161 (204)
T ss_dssp HHHHHHHHHHHHHHH-HHHTTHHHHHTTTTSCCSCSHHHHTTTTHHHHHHHHHHHHHHHHHHCSSSSSTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcccchhhHHHHHHHHhccchhhHHHHHHHHHHHHHhCCCCEEeCCcccHHHHHHH
Confidence 899999999999874 6665554433111 11 122 8899999999999 6 9999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+. .. .. ........||+|.+|+++|.++|.+++++...
T Consensus 162 ~~-~~-~~--~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 199 (204)
T 2ws2_A 162 EM-GF-TE--HYPKLYDGFPEVKAHAEKVRSNPKLKKWIETR 199 (204)
T ss_dssp HG-GG-CT--TSTTTTTTCHHHHHHHHHHTTSHHHHHHHHHS
T ss_pred HH-HH-Hh--cCcchhhhCchHHHHHHHHHcCHHHHHHHHhC
Confidence 98 32 22 12234578999999999999999999988653
|
| >1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=210.46 Aligned_cols=171 Identities=12% Similarity=0.109 Sum_probs=141.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----------ccC----CCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----------RLL----LSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----------~~~----P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++||++|+++|++|+.+.+++.+. .+| |.|+||+|+ +||.+|+||.||++||.
T Consensus 2 ~~L~~~~~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~-d~g~~l~eS~aI~~yL~ 80 (219)
T 1gsu_A 2 VTLGYWDIRGLAHAIRLLLEYTETPYQERRYKAGPAPDFDPSDWTNEKEKLGLDFPNLPYLI-DGDVKLTQSNAILRYIA 80 (219)
T ss_dssp EEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCSTTSCCTHHHHTTGGGSCCSSCCSSEEE-ETTEEEESHHHHHHHHH
T ss_pred cEEEEeCCCchhHHHHHHHHHcCCCceEEEeccCcccccchhhHhhhcccCCCCCCCCCEEE-ECCEEEecHHHHHHHHH
Confidence 689999999999999999999999999999997531 134 999999997 88999999999999996
Q ss_pred ------CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhH
Q psy7266 67 ------KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 ------p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l 133 (1175)
|.++.+++.+++|+.+.. .+.+.+...++... ...+.+.+.|+.||++|+ ++||+|+++|+|||++
T Consensus 81 ~~~~l~p~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l 159 (219)
T 1gsu_A 81 RKHNMCGETEVEKQRVDVLENHLM-DLRMAFARLCYSPDFEKLKPAYLEQLPGKLRQLSRFLGSRSWFVGDKLTFVDFLA 159 (219)
T ss_dssp HTTTCSCCSHHHHHHHHHHHHHHH-HHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhccCCEecCCCCCHHHHHH
Confidence 678889999999998765 45554444332221 123467889999999999 9999999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
++.|.++..... .....||+|.+|+++|.++|.+++++..
T Consensus 160 ~~~l~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 199 (219)
T 1gsu_A 160 YDVLDQQRMFVP--DCPELQGNLSQFLQRFEALEKISAYMRS 199 (219)
T ss_dssp HHHHHHHHHHST--TCGGGSSHHHHHHHHHHTSHHHHHHHTS
T ss_pred HHHHHHHHHhCh--hhhhhchHHHHHHHHHHcCHHHHHHHhc
Confidence 999998654322 2457899999999999999999988753
|
| >2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-22 Score=212.16 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=142.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KF 68 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~ 68 (1175)
|+||+++.||++++++++|+++|++|+.+.+++.+ ..+||.|+||+|+ +||.+|+||.||++||. |.
T Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~L~p~ 82 (210)
T 2a2r_A 4 YTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQ-DGDLTLYQSNTILRHLGRTLGLYGK 82 (210)
T ss_dssp EEEEECSSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEE-ETTEEEECHHHHHHHHHHHTTCSCS
T ss_pred eEEEEeCCcchHHHHHHHHHHcCCCceEEEecHHhhchhhccCCCCCCCCCEEE-ECCEEEeeHHHHHHHHHHhcCCCCC
Confidence 58999999999999999999999999999998753 1268999999997 78999999999999985 77
Q ss_pred ChHHHHHHHHHHHHHhhhchhhhhhhhcCC-----CCchHHHHHHHHHHHHHhc-CC----cccCCCCCccchhHHHHHH
Q psy7266 69 DTKNESAINQWLEWESVELFPSVLSFFDNP-----KVLPDNLKTKLNVLNEAIS-NS----FLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 69 ~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g-----~~~~~~l~~~L~~Le~~L~-~~----fLvG~~lTlADi~l~~~L~ 138 (1175)
++.+++.+++|+++.. .+.+.+..+++.. ....+.+.+.|+.||++|. ++ ||+|+++|+|||++++.|.
T Consensus 83 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~g~~~l~G~~~t~ADi~l~~~l~ 161 (210)
T 2a2r_A 83 DQQEAALVDMVNDGVE-DLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLLL 161 (210)
T ss_dssp SHHHHHHHHHHHHHHH-HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTSCSSTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCCCHHHHHHHHHHH
Confidence 8889999999999874 4555544433211 1123467889999999999 76 9999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++..... .....||+|.+|+++|.++|.+++++..-
T Consensus 162 ~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 197 (210)
T 2a2r_A 162 IHEVLAP--GCLDAFPLLSAYVGRLSARPKLKAFLASP 197 (210)
T ss_dssp HHHHHST--TGGGGCHHHHHHHHHHHTSHHHHHHHHSH
T ss_pred HHHhhCc--chhhcCcHHHHHHHHHHcCHHHHHHHhcC
Confidence 8653322 24578999999999999999999988653
|
| >2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=209.92 Aligned_cols=173 Identities=14% Similarity=0.196 Sum_probs=143.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCC--C--cEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDD--G--SQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~d--G--~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.++..+ ..+||.|+||+|+.+| | .+|+||.+|++||.
T Consensus 6 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~~yL~~~~~l~ 85 (211)
T 2wb9_A 6 FKLWYFQFRGRAEPIRLLLTCAGVKFEDYQFTMDQWPTIKPTLPGGRVPLLDVTGPDGKLRRYQESMAIARLLARQFKMM 85 (211)
T ss_dssp EEEEEESSCGGGHHHHHHHHHTTCCCEEEEECTTTHHHHGGGSGGGCSCEEEEECTTSCEEEEESHHHHHHHHHHHTTCS
T ss_pred eEEEEeCCCCchHHHHHHHHHcCCCceEEEechhhHHHhCcCCCCCCCCEEEECCCCccceeecCHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999998643 2378999999998655 5 99999999999985
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCC---------chHHHHHHHHHHHHHhc---CCcccCCCCCccchhHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPKV---------LPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~---------~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~ 134 (1175)
|.++.+++.+++|+++.. .+.+.+..++..+.. ..+.+.+.|+.||++|. ++||+|+++|+|||+++
T Consensus 86 p~~~~~~a~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~l~ 164 (211)
T 2wb9_A 86 GETDEEYYLIERIIGECE-DLYREVYTIFRTPQGEKEAKIKEFKENNGPTLLKLVSESLESSGGKHVAGNRITLGDLFLF 164 (211)
T ss_dssp CSSHHHHHHHHHHHHHHH-HHHHHHHHHHTSCTTTHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSCSSTTSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEeCCCccHHHHHHH
Confidence 778889999999999998 676666554432221 23457889999999998 48999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHH-hcCHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRI-SKLPQVQKALKT 175 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl-~~~P~~~~~l~~ 175 (1175)
+.|.++.... .......||+|.+|+++| .++|.++++++.
T Consensus 165 ~~l~~~~~~~-~~~~~~~~p~l~~w~~~~~~~~p~~~~~~~~ 205 (211)
T 2wb9_A 165 TTLTHVMETV-PGFLEQKFPKLHEFHKSLPTSCSRLSEYLKK 205 (211)
T ss_dssp HHHHHHHHHS-TTHHHHHCHHHHHHHHHGGGGCHHHHHHHHH
T ss_pred HHHHHHHhcc-CccccccCcHHHHHHHHHHhcCHhHHHHHHh
Confidence 9999865322 122356799999999999 999999998865
|
| >4hz4_A Glutathione-S-transferase; enzyme function initiative; 1.62A {Actinobacillus pleuropneumoniae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=211.38 Aligned_cols=169 Identities=16% Similarity=0.150 Sum_probs=142.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc---------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD---------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~---------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.+ +++++|++|+++|++|+.+.+++.. ..+||.|+||+|+ +||.+|+||.||++||.
T Consensus 4 ~~Ly~~~~~-~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~ 81 (217)
T 4hz4_A 4 ITLHYLKQS-CSHRIVWLLEALGLDYELKIYDRLEGTGFAPEELKAQHPLGKAPVLQ-DGDLVLAEGNAIIQHLLDRYDT 81 (217)
T ss_dssp EEEEEESSS-TTHHHHHHHHHHTCCCEEEEECCCTTTCCCCHHHHTTSTTCCSCEEE-ETTEEEECHHHHHHHHHHHHCT
T ss_pred EEEeecCCC-cHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHhcCCCCCCCEEE-ECCEeeecHHHHHHHHHHhCCC
Confidence 489999865 7999999999999999999998753 1278999999997 78999999999999985
Q ss_pred -----CC-ChHHHHHHHHHHHHHhhhchhhhhhhhc--CCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccch
Q psy7266 67 -----KF-DTKNESAINQWLEWESVELFPSVLSFFD--NPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADI 131 (1175)
Q Consensus 67 -----p~-~~~~~a~v~~wl~~~~~~l~p~~~~~~~--~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi 131 (1175)
|. ++.+++.+++|++|.. .+.+.+..++. .+. ...+.+.+.|+.||++|+ ++||+|+++|+|||
T Consensus 82 ~~~L~p~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi 160 (217)
T 4hz4_A 82 ENRFTPAHKTDAYSNYVYWLAISA-SMFSANLLALVSKKGDLGDFAQYTNAQVGLYFSHVEKSLEGKTWIVGEQLTGADF 160 (217)
T ss_dssp TCSSSCCSSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHTTTCSSSSSSSCCHHHH
T ss_pred cccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHH
Confidence 44 7789999999999998 77776655332 111 123567889999999999 99999999999999
Q ss_pred hHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 132 CIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 132 ~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++++.+.++.... ....||+|.+|+++|.++|.++++++.-
T Consensus 161 ~l~~~l~~~~~~~----~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 201 (217)
T 4hz4_A 161 ALSFPLQWGLNYV----NKADYPNITRYLEQIETHPAYLKANEKT 201 (217)
T ss_dssp HHHHHHHHHTTTS----CGGGCHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC----ccccCchHHHHHHHHhcCHHHHHHHHhc
Confidence 9999999864322 5678999999999999999999998765
|
| >1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=215.22 Aligned_cols=172 Identities=15% Similarity=0.120 Sum_probs=142.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCCh
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFDT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~~ 70 (1175)
|+||+++.||+++++|++|.++|++|+.+.++..+ ..+||.|+||+|+ +||.+|+||.+|++||. |.++
T Consensus 50 ~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~e~~~~nP~gkVPvL~-~~g~~l~ES~aI~~YL~~~~~L~p~~~ 128 (249)
T 1m0u_A 50 YTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVLE-VDGKRVHQSISMARFLAKTVGLCGATP 128 (249)
T ss_dssp EEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTTHHHHGGGSGGGCSCEEE-ETTEEEECHHHHHHHHHHHHTCSCSSH
T ss_pred eEEEEcCCcccHHHHHHHHHHcCCCcEEEEeCHHHHHHHhhcCCCCCCCEEE-ECCEEEecHHHHHHHHHHhcCcCCCCH
Confidence 58999999999999999999999999999998643 2378999999997 68999999999999985 7788
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhcCCCC----------chHHHHHHHHHHHHHhc-C-CcccCCCCCccchhHHHHHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFDNPKV----------LPDNLKTKLNVLNEAIS-N-SFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~----------~~~~l~~~L~~Le~~L~-~-~fLvG~~lTlADi~l~~~L~ 138 (1175)
.+++.+++|+++..+ +.+.+..+++.... ..+.+.+.|+.||++|. + +||+|+++|+|||++++.|.
T Consensus 129 ~~ra~v~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~le~~L~~~g~fl~Gd~~T~ADi~l~~~l~ 207 (249)
T 1m0u_A 129 WEDLQIDIVVDTIND-FRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYFAGITD 207 (249)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSBTTBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEeeCCCCcHHHHHHHHHHH
Confidence 899999999999854 66655544432110 12357889999999999 7 99999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
++..... ......||+|.+|+++|.++|.+++++..
T Consensus 208 ~~~~~~~-~~~~~~~P~L~~w~~ri~~rp~~~~~~~~ 243 (249)
T 1m0u_A 208 YMNYMVK-RDLLEPYPALRGVVDAVNALEPIKAWIEK 243 (249)
T ss_dssp HHHHHHT-SCTTTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHhhcC-cchhhcCcHHHHHHHHHHcCHHHHHHHHc
Confidence 8653111 12357899999999999999999998865
|
| >2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-22 Score=213.25 Aligned_cols=170 Identities=14% Similarity=0.201 Sum_probs=143.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc------CCCh
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS------KFDT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p~~~ 70 (1175)
|+||+++.||++++++++|.++|++|+.+.++... ..+||.|+||+|+ +||.+|+||.+|++||. |.++
T Consensus 28 ~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~nP~g~vPvL~-~~g~~l~eS~aI~~YL~~~~~L~p~~~ 106 (225)
T 2hnl_A 28 YTLTYFNGRGRAEVIRLLFALANVSYEDNRITRDEWKYLKPRTPFGHVPMLN-VSGNVLGESHAIELLLGGRFGLLGTND 106 (225)
T ss_dssp EEEEEESSSGGGHHHHHHHHHHTCCCEEEEECHHHHHHHGGGSSSSCSCEEE-ETTEEEECHHHHHHHHHHHTTCSCSSH
T ss_pred eEEEEcCCCCchHHHHHHHHHCCCCeeEEEeChhhhHHhccCCCCCCCCEEE-ECCEEEecHHHHHHHHHHHcCCCCCCH
Confidence 58999999999999999999999999999998632 2378999999997 68999999999999985 7788
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhcCCCC----------chHHHHHHHHHHHHHhc-C--CcccCCCCCccchhHHHHH
Q psy7266 71 KNESAINQWLEWESVELFPSVLSFFDNPKV----------LPDNLKTKLNVLNEAIS-N--SFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~----------~~~~l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~~~L 137 (1175)
.+++++++|+.+.. .+.+.+..+++.... ..+.+.+.|+.||++|. + +||+|+++|+|||++++.|
T Consensus 107 ~~~a~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ADi~l~~~l 185 (225)
T 2hnl_A 107 WEEAKIMAVVLNID-ELFQKLIPWTHEKNTTKKAELFRNLSESDVMPFLGRYEKFLKESTTGHIVGNKVSVADLTVFNML 185 (225)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHCCSHHHHHHHHHHHHTTTHHHHHHHHHHHHHTCSSSCSSTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhcccHhhHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCEEeCCcccHHHHHHHHHH
Confidence 89999999999988 666666554432210 12346889999999999 7 9999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.++.. . .....||+|.+|+++|.++|.+++++...
T Consensus 186 ~~~~~--~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 220 (225)
T 2hnl_A 186 MTLDD--E--VKLEEYPQLASFVNKIGQMPGIKEWIKKR 220 (225)
T ss_dssp HHTGG--G--CCGGGCHHHHHHHHHHHHSTTHHHHHHHS
T ss_pred HHhcc--c--chhhhChHHHHHHHHHHcCHhHHHHHhcC
Confidence 98644 2 24578999999999999999999988653
|
| >3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=214.41 Aligned_cols=174 Identities=19% Similarity=0.260 Sum_probs=143.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++.+. .+||.|+||+|+.+||.+|+||.||++||.
T Consensus 24 ~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~L~ 103 (241)
T 3vln_A 24 IRIYSMRFSPFAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLL 103 (241)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCEEEEEBCTTSCCTTHHHHCTTCCSCEEECTTCCEEESHHHHHHHHHHHSCSSCCS
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCCeEEecCcccCCHHHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCCCCCCC
Confidence 589999999999999999999999999999987652 378999999998669999999999999985
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHhc-C--CcccCCCCCccchhHHHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAIS-N--SFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L~-~--~fLvG~~lTlADi~l~~~L~ 138 (1175)
|.++.+++.+++|+++... +.+.+..++.... ...+.+.+.|+.||++|. + +||+|+++|+|||++++.|.
T Consensus 104 p~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~ADi~l~~~l~ 182 (241)
T 3vln_A 104 PDDPYEKACQKMILELFSK-VPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFE 182 (241)
T ss_dssp CSSHHHHHHHHHHHHHHTT-HHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSBTTBSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCCCCCCHHHHHHHHHHH
Confidence 5678889999999998765 4444444332111 123567889999999998 5 99999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++..... ......||+|.+|+++|.++|.+++++...
T Consensus 183 ~~~~~~~-~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 219 (241)
T 3vln_A 183 RLEAMKL-NECVDHTPKLKLWMAAMKEDPTVSALLTSE 219 (241)
T ss_dssp HHTTTTC-GGGSTTCHHHHHHHHHHHTSHHHHHHCCCH
T ss_pred HHHhcCC-ccccccCchHHHHHHHHHcCHHHHHHhCCH
Confidence 8743222 123578999999999999999999987654
|
| >3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=213.69 Aligned_cols=173 Identities=14% Similarity=0.127 Sum_probs=144.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCC----------cEEeCHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDG----------SQLFSANQSC 62 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG----------~~l~eS~aI~ 62 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+||.|+||+|+.+|| .+|+||.||+
T Consensus 10 ~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~~~~~~~~~~~l~eS~aI~ 89 (235)
T 3n5o_A 10 FELYGYFRSSCSGRLRIAFHLKSIPYTRHPVNLLKGEQHSDTYKSLNPTNTVPLLVVSNINNTVSPSSASFSIGQSLAAL 89 (235)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEEESSCCSSSTTCSEEEECSHHHHH
T ss_pred eEEEecCCCcHHHHHHHHHHHcCCccEEEecccccccccCHHHHhcCCCCCCCEEEeCCCccccccccCceeehhHHHHH
Confidence 589999999999999999999999999999987532 2689999999987776 9999999999
Q ss_pred HHHc-----------C--CChHHHHHHHHHHHHHhhhchhhhhhhhc-----CCCC----chHHHHHHHHHHHHHhc---
Q psy7266 63 LYLS-----------K--FDTKNESAINQWLEWESVELFPSVLSFFD-----NPKV----LPDNLKTKLNVLNEAIS--- 117 (1175)
Q Consensus 63 ~YL~-----------p--~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-----~g~~----~~~~l~~~L~~Le~~L~--- 117 (1175)
+||. | .++.+++.+++|+.|..+.+.+.+...+. .+.. ..+.+.+.|+.||++|.
T Consensus 90 ~yL~~~~~~~~~~L~p~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~ 169 (235)
T 3n5o_A 90 EYLEEALPTNARPLLPPISNPVARAHVRTICNIIACDVQPVTNLKIQKKVKALDGDPTVWSRDLATQGFGAVEKLLELSA 169 (235)
T ss_dssp HHHHHHCTTCSCCSSCCTTCHHHHHHHHHHHHHHHHHTTGGGSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCchhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 9985 3 56778999999999998888775433221 2221 24567889999999998
Q ss_pred CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 118 NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 118 ~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++||+|+++|+|||++++.|.++.... .....||+|.+|+++|.++|.|++++.+.
T Consensus 170 ~~fl~G~~~t~ADi~l~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 225 (235)
T 3n5o_A 170 GRFCVGDEITLADVCLVPAVWAAERVG---MDLARFPITKRVFEEMLKEEAVQKAHWQK 225 (235)
T ss_dssp SSSSSBTSCCHHHHHHHHHHHHHHHTT---CCGGGSHHHHHHHHHHHTCHHHHHTCGGG
T ss_pred CCcccCCcccHHHHHHHHHHHHHHHhC---CCcccChHHHHHHHHHHcCHHHHhhCccc
Confidence 789999999999999999999975432 23478999999999999999999887643
|
| >2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=208.25 Aligned_cols=171 Identities=15% Similarity=0.195 Sum_probs=141.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccC-CCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLL-LSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~-P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.+. .++ |.|+||+|+ +||.+|+||.+|++||.
T Consensus 2 ~~L~y~~~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~-d~g~~l~eS~aI~~YL~~~~~l 80 (216)
T 2fhe_A 2 AKLGYWKIRGLQQPVRLLLEYLGEKYEEQIYERDDGEKWFSKKFELGLDLPNLPYYI-DDKCKLTQSLAILRYIADKHGM 80 (216)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTTCCEEEEEECTTCHHHHHHHTTTSCCSSCCSSEEE-CSSCEEESHHHHHHHHHHHTTC
T ss_pred cEEEEcCCCchhHHHHHHHHHcCCCceEEeeCCCchhhhhccccccCCCCCCCCEEE-ECCEEEEeHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999997421 245 999999997 88999999999999986
Q ss_pred -CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHH
Q psy7266 67 -KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 67 -p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
|.++.+++.+++|+.+.. .+.+.+..+++... ...+.+.+.|+.||++|. ++||+|+++|+|||++++.|.
T Consensus 81 ~p~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~l~ 159 (216)
T 2fhe_A 81 IGTTSEERARVSMIEGAAV-DLRQGISRISYQPKFEQLKEGYLKDLPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEALD 159 (216)
T ss_dssp SCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhCcCCcccCCCCCHHHHHHHHHHH
Confidence 678889999999998764 45555544433221 123467889999999999 999999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
++..... .....||+|.+|+++|.++|.+++++..
T Consensus 160 ~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 194 (216)
T 2fhe_A 160 AIRYLEP--HCLDHFPNLQQFMSRIEALPSIKAYMES 194 (216)
T ss_dssp HHHHHCT--TTTTTCHHHHHHHHHHHTSHHHHHHHTS
T ss_pred HHHHhCh--HhhhcCchHHHHHHHHHhChHHHHHHhc
Confidence 8654321 3457899999999999999999988753
|
| >2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-22 Score=213.75 Aligned_cols=175 Identities=13% Similarity=0.193 Sum_probs=142.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCC-CcccEEEeCCCcEEeCHHHHHHHHc--------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLS-KTVPVLELDDGSQLFSANQSCLYLS-------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~-g~vP~L~~~dG~~l~eS~aI~~YL~-------- 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++... .+||. |+||+|+ +||.+|+||.+|++||.
T Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~~ 83 (219)
T 2vo4_A 5 VVLLDFWPSPFGMRVRIALAEKGIKYEYKEEDLRNKSPLLLQMNPVHKKIPVLI-HNGKPICESLIAVQYIEEVWNDRNP 83 (219)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTSCCHHHHHHCTTTCCSCEEE-ETTEEEESHHHHHHHHHHHSTTSCC
T ss_pred eEEEeccCCchHHHHHHHHHHcCCCceEEecCcccCCHHHHHhCCCCCcCCEEE-ECCEeeehHHHHHHHHHHhCCCCCC
Confidence 579999999999999999999999999999987532 27897 8999997 78999999999999995
Q ss_pred --CCChHHHHHHHHHHHHHhhhchhhhhhhhcCC----CCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 67 --KFDTKNESAINQWLEWESVELFPSVLSFFDNP----KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 67 --p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g----~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
|.++.+++.+++|+.+..+.+.+.+..++... ....+.+.+.|+.||++|+ ++||+|+++|+|||++++.|.+
T Consensus 84 L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~l~~ 163 (219)
T 2vo4_A 84 LLPSDPYQRAQTRFWADYVDKKIYDLGRKIWTSKGEEKEAAKKEFIEALKLLEEQLGDKTYFGGDNLGFVDIALVPFYTW 163 (219)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHhccchhHHHhhccCcHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCHHHHHHHHHHHH
Confidence 34667899999999999887877665544321 1224567889999999999 9999999999999999999877
Q ss_pred HhhC--CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 140 LLSD--SKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 140 ~~~~--~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+... .........||+|.+|+++|.++|.+++++...
T Consensus 164 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 202 (219)
T 2vo4_A 164 FKAYETFGTLNIESECPKFIAWAKRCLQKESVAKSLPDQ 202 (219)
T ss_dssp HHHHHHHTTCCHHHHCHHHHHHHHHHHTSHHHHTTCCCH
T ss_pred HHHHHHhcCcchhhcChHHHHHHHHHhcChHHHHhCCCH
Confidence 5321 111122467999999999999999999875543
|
| >3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=209.16 Aligned_cols=172 Identities=13% Similarity=0.107 Sum_probs=142.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----------c---c-CCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----------R---L-LLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----------~---~-~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+++++|++|+++|++|+.+.+++.+. . + ||+|+||+|+ +||.+|+||.+|++||.
T Consensus 6 ~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~-d~g~~l~eS~aI~~yL~ 84 (224)
T 3gtu_B 6 MVLGYWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLL-DGKNKITQSNAILRYIA 84 (224)
T ss_dssp EEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCCSSSCCCHHHHHHHTTSCCSSCCSSEEE-ETTEEEESHHHHHHHHH
T ss_pred cEEEEeCCCcchHHHHHHHHHcCCCceEEEeecCCcccccHHHHHhhhhhcCCCCCCCCEEE-ECCEEeecHHHHHHHHH
Confidence 689999999999999999999999999999986431 0 2 7999999995 88999999999999985
Q ss_pred ------CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhH
Q psy7266 67 ------KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 ------p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l 133 (1175)
|.++.+++.+++|+.+... +.+.+..+++... ...+.+.+.|+.||++|. ++||+|+++|+|||++
T Consensus 85 ~~~~L~p~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l 163 (224)
T 3gtu_B 85 RKHNMCGETEEEKIRVDIIENQVMD-FRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLT 163 (224)
T ss_dssp HHTTCSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCcHHHHHH
Confidence 7788899999988776653 4444444433221 124567889999999999 9999999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++.|.++..... .....||+|.+|+++|.++|.++++++.-
T Consensus 164 ~~~l~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 204 (224)
T 3gtu_B 164 YDILDQNRIFDP--KCLDEFPNLKAFMCRFEALEKIAAYLQSD 204 (224)
T ss_dssp HHHHHHHHHHCG--GGGTTCHHHHHHHHHHHTSHHHHHHHHCH
T ss_pred HHHHHHHHhhCh--hhhccCcHHHHHHHHHHcCHHHHHHHhCC
Confidence 999998754332 24678999999999999999999998754
|
| >2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=209.23 Aligned_cols=171 Identities=13% Similarity=0.121 Sum_probs=141.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++..+ .+||.|+||+| .+||.+|+||.+|++||.
T Consensus 3 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L-~~~g~~l~eS~aI~~yL~~~~~~~ 81 (214)
T 2v6k_A 3 MKLYNFWRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPAL-DTGAQVLIQSPAIIEWLEEQYPTP 81 (214)
T ss_dssp CEEEECSSCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEE-ECSSCEEECHHHHHHHHHHHSCSS
T ss_pred eEEEecCCCCcHHHHHHHHHHCCCCceEEecCCCcccccCHHHHhcCCCCcCCEE-EECCEEEecHHHHHHHHHHhCCCC
Confidence 799999999999999999999999999999987531 26899999999 589999999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhhhh----hhc--CCCC-------chHHHHHHHHHHHHHhc-C----CcccCCC
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSVLS----FFD--NPKV-------LPDNLKTKLNVLNEAIS-N----SFLIENS 125 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~~~----~~~--~g~~-------~~~~l~~~L~~Le~~L~-~----~fLvG~~ 125 (1175)
|.++.+++.+++|+.|..+.+.+.... ++. .+.. ....+.+.|+.||++|. + +||+|++
T Consensus 82 ~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~ 161 (214)
T 2v6k_A 82 ALLPADADGRQRVRALAAIVGCDIHPINNRRILEYLRKTFGADEAAINAWCGTWISAGFDAYEALLAVDPKRGRYSFGDT 161 (214)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHHTGGGGSHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSSSSTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCCC
Confidence 567788999999999998877763211 111 1221 12467889999999997 3 8999999
Q ss_pred CCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 126 lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+|+|||++++.|.++.... .....||+|.+|+++|.++|.|++++..
T Consensus 162 ~t~ADi~l~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 208 (214)
T 2v6k_A 162 PTLADCYLVPQVESARRFQ---VDLTPYPLIRAVDAACGELDAFRRAAPA 208 (214)
T ss_dssp CCHHHHHHHHHHHHHHHTT---CCCTTCHHHHHHHHHHTTSHHHHHHSGG
T ss_pred CCHHHHHHHHHHHHHHHcC---CChhhChhHHHHHHHHHcCHHHHhhCcc
Confidence 9999999999999875432 2347899999999999999999987654
|
| >2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=210.10 Aligned_cols=171 Identities=15% Similarity=0.152 Sum_probs=141.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----------RLLLSKTVPVLELDDGSQLFSANQSCLYLS---- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---- 66 (1175)
|+||+++.||++++|+++|.++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 13 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~e~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~ 91 (223)
T 2cz2_A 13 PILYSYFRSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNPMKQVPALK-IDGITIVQSLAIMEYLEETRP 91 (223)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSSGGGCGGGSHHHHHHCTTCCSCEEE-ETTEEEESHHHHHHHHHHHSC
T ss_pred eEEEecCCCChHHHHHHHHHhcCCCCeEEEeecccCchhhcCHHHhccCCCCCCCEEE-ECCEEEeeHHHHHHHHHHhCC
Confidence 689999999999999999999999999999987532 268999999997 78999999999999985
Q ss_pred -----CCChHHHHHHHHHHHHHhhhchhhhhhh--hcCCCC-----chHHHHHHHHHHHHHhc---CCcccCCCCCccch
Q psy7266 67 -----KFDTKNESAINQWLEWESVELFPSVLSF--FDNPKV-----LPDNLKTKLNVLNEAIS---NSFLIENSTTVADI 131 (1175)
Q Consensus 67 -----p~~~~~~a~v~~wl~~~~~~l~p~~~~~--~~~g~~-----~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi 131 (1175)
|.++.+++.+++|+++....+.+.+... ...+.. ..+.+.+.|+.||++|. ++||+|+++|+|||
T Consensus 92 ~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi 171 (223)
T 2cz2_A 92 IPRLLPQDPQKRAIVRMISDLIASGIQPLQNLSVLKQVGQENQMQWAQKVITSGFNALEKILQSTAGKYCVGDEVSMADV 171 (223)
T ss_dssp SSCSSCSSHHHHHHHHHHHHHHHHHTGGGGSHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHBSSSSSBTSCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCccchhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCHHHH
Confidence 5677889999999999987776642111 111221 13457889999999998 58999999999999
Q ss_pred hHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 132 CIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 132 ~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
++++.|.++.... .....||+|.+|+++|.++|.|++++..
T Consensus 172 ~l~~~l~~~~~~~---~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 212 (223)
T 2cz2_A 172 CLVPQVANAERFK---VDLSPYPTISHINKELLALEVFQVSHPR 212 (223)
T ss_dssp HHHHHHHHHHHTT---CCCTTCHHHHHHHHHHHTSHHHHTTCGG
T ss_pred HHHHHHHHHHHhC---CChhhChHHHHHHHHHhcChHHHHhCcC
Confidence 9999998865432 2357899999999999999999887644
|
| >1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=212.12 Aligned_cols=177 Identities=16% Similarity=0.219 Sum_probs=145.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++..+ .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 3 ~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-d~g~~l~eS~aI~~YL~~~~~~~ 81 (244)
T 1ljr_A 3 LELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLK-DGDFILTESSAILIYLSCKYQTP 81 (244)
T ss_dssp CEEEECTTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEE-ETTEEEECHHHHHHHHHHHTTCC
T ss_pred EEEEecCCCcchHHHHHHHHHcCCCCeEEEecccccccCCHHHHHhCCCCcCcEEE-ECCEEEEchHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999997532 378999999997 88999999999999985
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhc-------CCC--------CchHHHHHHHHHHHHH-hc-CCcccCCC
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFD-------NPK--------VLPDNLKTKLNVLNEA-IS-NSFLIENS 125 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-------~g~--------~~~~~l~~~L~~Le~~-L~-~~fLvG~~ 125 (1175)
|.++.+++.+++|+.|..+.+.+.+..++. .+. ...+.+.+.|+.||++ |. ++||+|++
T Consensus 82 ~~L~p~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ll~~~~fl~Gd~ 161 (244)
T 1ljr_A 82 DHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQ 161 (244)
T ss_dssp GGGSCCSHHHHHHHHHHHHHHHHHTTTTSSHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTTSSSSBTTBSS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCcEecCCC
Confidence 456778999999999998877665443221 121 1134678899999997 66 99999999
Q ss_pred CCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcC--H-HHHHHHHHHHHHh
Q psy7266 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKL--P-QVQKALKTWTEVL 180 (1175)
Q Consensus 126 lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~--P-~~~~~l~~~~~~~ 180 (1175)
+|+|||++++.|.++..... .....||+|.+|+++|.++ | .+++++.....+.
T Consensus 162 ~T~ADi~l~~~l~~~~~~~~--~~~~~~p~l~~w~~~~~~~~~p~~~~~~~~~~~~~~ 217 (244)
T 1ljr_A 162 VTLADLMALEELMQPVALGY--ELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSIL 217 (244)
T ss_dssp CCHHHHHHHHHHHHHHHTTC--CTTTTCHHHHHHHHHHHHHHCHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCC--cccccCHHHHHHHHHHHhhhCchhHHHHHHHHHHHH
Confidence 99999999999988653322 2357899999999999999 9 9999988775443
|
| >3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics; 2.05A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=209.17 Aligned_cols=174 Identities=13% Similarity=0.084 Sum_probs=141.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--cccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------CCC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--ARLLLSKTVPVLELDDGSQLFSANQSCLYLS---------KFD 69 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---------p~~ 69 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.. ...||.|+||+|+.+ |.+|+||.+|++||. |.+
T Consensus 3 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~P~g~vP~L~~~-~~~l~eS~aI~~yL~~~~~~~~L~p~~ 81 (214)
T 3cbu_A 3 LKLCGFAASNYYNKVKLALLEKNVPFEEVLAWIGETDTTATPAGKVPYMITE-SGSLCESEVINEYLEAAYPQTPLLPRD 81 (214)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCEEEEECCTTSSCTTTSTTCCSCEEEET-TEEECSHHHHHHHHHHHCTTSCSSCSS
T ss_pred EEEecCCCCcHhHHHHHHHHhCCCCCEEEecCcccCCcccCCCCCCCEEEEC-CeeeecHHHHHHHHHHhCCCCCCCCCC
Confidence 58999999999999999999999999999998632 224999999999754 459999999999985 567
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhc---CC-C-------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 70 TKNESAINQWLEWESVELFPSVLSFFD---NP-K-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 70 ~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g-~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
+.+++.+++|+.|..+.+.+.+..++. .+ . ...+.+.+.|+.||++|+ ++||+|+++|+|||++++.|
T Consensus 82 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~l 161 (214)
T 3cbu_A 82 PMQAGKVREIVTFLELYLELTARELYPEAFFGGKVSDNVKERQLKLLSRYVPAFAKLAKFSPYVAGDTFTLADCAAAVHL 161 (214)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHTTHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHHCCCSSBTTBSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHH
Confidence 789999999999999888776433221 12 1 123467889999999999 99999999999999999999
Q ss_pred HHHhhCCCCCCCcccchh---HHHHHHHHhcCHHHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTN---ITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~---L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.++..... ......||+ |.+|+++|.++|.+++++...
T Consensus 162 ~~~~~~~~-~~~~~~~p~~~~l~~w~~~~~~~p~~~~~~~~~ 202 (214)
T 3cbu_A 162 PLVSSCTK-IIYGKDLLADLPVKEYLKTLSERPSVQKVNADR 202 (214)
T ss_dssp HHHHHHHH-HHHSSCTTTTSCHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhcc-ccCHhhccchhhHHHHHHHHHcCHHHHHHHHHH
Confidence 88643211 012356888 999999999999999998765
|
| >1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=207.56 Aligned_cols=174 Identities=13% Similarity=0.195 Sum_probs=141.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----ccCCCCcccEEEeCCCc----EEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----RLLLSKTVPVLELDDGS----QLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----~~~P~g~vP~L~~~dG~----~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.+. .+||.|+||+|+.+|+. +|+||.+|++||.
T Consensus 6 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~~yL~~~~~l~ 85 (211)
T 1oe8_A 6 IKVIYFNGRGRAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIARYMAKKHHMM 85 (211)
T ss_dssp EEEEESCTTSTTHHHHHHHHHTTCCCEEEECCTTTHHHHGGGSTTSCSCEEEEECTTCCEEEEESHHHHHHHHHHHTTCS
T ss_pred eEEEEeCCCChHHHHHHHHHHcCCCceEEEechHhHHHhcccCCCCCCCEEEECCccccceeeccHHHHHHHHHHHcCCC
Confidence 589999999999999999999999999999987542 36899999999866655 5999999999985
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC---------CchHHHHHHHHHHHHHh--c-CCcccCCCCCccchhHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPK---------VLPDNLKTKLNVLNEAI--S-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~---------~~~~~l~~~L~~Le~~L--~-~~fLvG~~lTlADi~l~ 134 (1175)
|.++.+++++++|+.+..+ +.+.+...+.... .....+.+.|+.||++| . ++||+|+++|+|||+++
T Consensus 86 p~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~l~ 164 (211)
T 1oe8_A 86 GGTEEEYYNVEKLIGQAED-LEHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLI 164 (211)
T ss_dssp CSSHHHHHHHHHHHHHHHH-HHHHHHTTTTCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHTCSSSSSSTTSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHhhCCcHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCCcEeeCCCCchHHHHHH
Confidence 7788899999999999764 3343332222111 11235678999999999 7 89999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcC-HHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKL-PQVQKALKTW 176 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~-P~~~~~l~~~ 176 (1175)
+.|.++..... ......||+|.+|+++|.++ |.+++++.+-
T Consensus 165 ~~l~~~~~~~~-~~~~~~~p~l~~w~~~~~~~~p~~~~~~~~~ 206 (211)
T 1oe8_A 165 AVIDHVTDLDK-EFLTGKYPEIHKHRENLLASSPRLAKYLSDR 206 (211)
T ss_dssp HHHHHHHHHCT-TTTTTSCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHhcCc-hhhhhcCcHHHHHHHHHHhcCHhHHHHHHhC
Confidence 99998753321 12457899999999999999 9999998754
|
| >4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=215.86 Aligned_cols=171 Identities=19% Similarity=0.221 Sum_probs=143.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCC--cEEeCHHHHHHHHc----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDG--SQLFSANQSCLYLS---- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG--~~l~eS~aI~~YL~---- 66 (1175)
|+||+++ ||++++++++|.++|++|+.+.+++.+. .+||.|+||+|+.+|| .+|+||.+|++||.
T Consensus 4 ~~Ly~~~-sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~~~dg~~~~l~eS~aI~~YL~~~~~ 82 (244)
T 4ecj_A 4 IDLYTAA-TPNGHKVSIALEEMGLPYRVHALSFDKKEQKAPEFLRINPNGRIPAIVDRDNDDFAVFESGAILIYLAEKTG 82 (244)
T ss_dssp EEEEECS-SHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHHHHHHHT
T ss_pred EEEecCC-CcCHHHHHHHHHHcCCCceEEEecCCCCCcCCHHHHhcCCCCCCCEEEECCCCeEEEecHHHHHHHHHHhCC
Confidence 4899997 9999999999999999999999997652 2789999999987777 59999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhhhhhhc----C-CC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccch
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSVLSFFD----N-PK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADI 131 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~-g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi 131 (1175)
|.++.+++.+++|+.|..+.+.+.+..... . +. ...+.+.+.|+.||++|. ++||+| ++|+|||
T Consensus 83 ~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G-~~T~ADi 161 (244)
T 4ecj_A 83 QLMPADVKGRSRVIQWLMFQMGGVGPMQGQANVFFRYFPEKLQGAIDRYQHETRRLYEVLDGRLGEAEYLAG-DYSIADI 161 (244)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHCSBTTB-SCCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhHHHhhHhheeccCCccCHHHHHHHHHHHHHHHHHHHHHhccCCeeCC-CCCHHHH
Confidence 778889999999999999888887654321 1 11 112467889999999999 999999 9999999
Q ss_pred hHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 132 CIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 132 ~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++++.+.++..... ....||+|.+|+++|.++|.+++++...
T Consensus 162 ~l~~~l~~~~~~~~---~~~~~P~l~~w~~r~~~~p~~~~~~~~~ 203 (244)
T 4ecj_A 162 ATYPWVRIHDWSGV---AVDGLDNLQRWIAAIEARPAVQRGLLVP 203 (244)
T ss_dssp HHHHHHHTHHHHTC---CCTTCHHHHHHHHHHHTCHHHHHHTTCS
T ss_pred HHHHHHHHHHhcCC---CcccCHHHHHHHHHHHcCHHHHHHHhcc
Confidence 99999998643322 3678999999999999999999987644
|
| >3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=210.29 Aligned_cols=172 Identities=12% Similarity=0.096 Sum_probs=141.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEec-Cccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVD-VADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~-~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.||+++++|++|.++|++|+.+.++ .... ..||+|+||+|+ +||.+|+||.+|++||.
T Consensus 3 ~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~-d~~~~l~eS~aI~~yL~~~~~L 81 (218)
T 3iso_A 3 PVLGYWKIRGLAQPIRLLLEYVGDSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYK-DGNFSLTQSLAILRYIADKHNM 81 (218)
T ss_dssp CEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEE-ETTEEEESHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCcchHHHHHHHHHcCCCceeeccCCCCHHHHHhhchhcCCCCCCCCeEE-ECCEEEecHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999997 2211 158999999995 88999999999999985
Q ss_pred -CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHH
Q psy7266 67 -KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 67 -p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
|.++.+++.+++|+.+.. .+.+.+..+++... ...+.+.+.|+.||++|. ++||+|+++|+|||++++.|.
T Consensus 82 ~p~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~l~ 160 (218)
T 3iso_A 82 IGNTPVERAKISMIEGGLV-DLRAGVSRIAYQETFEQLKVPYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYEALD 160 (218)
T ss_dssp SCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHHhHHHHHHHHHHHccCCcccCCCCCHHHHHHHHHHH
Confidence 778889999999988766 34444444333111 123567889999999999 999999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++..... .....||+|.+|+++|.++|.|+++++.-
T Consensus 161 ~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 196 (218)
T 3iso_A 161 VIRYLDP--TSVEAFPNLMQFIHRIEALPNIKAFMESD 196 (218)
T ss_dssp HHHHHCH--HHHHTCHHHHHHHHHHHHSHHHHHHHTST
T ss_pred HHHHhCh--hhhhhCchHHHHHHHHHhChHHHHHHcCC
Confidence 8753321 23578999999999999999999988643
|
| >3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-22 Score=216.57 Aligned_cols=175 Identities=19% Similarity=0.232 Sum_probs=143.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCc---EEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGS---QLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~---~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.+. .+||.|+||+|+.+||. +|+||.||++||.
T Consensus 27 ~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~g~vP~L~~~~g~~~~~l~eS~aI~~yL~~~~~~~ 106 (246)
T 3rbt_A 27 LRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEWFRAKNPRLKIPVLEIPTDQGDRFLFESVVICDYLDEKYTRH 106 (246)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTBCEEEEECCSSSCCHHHHHHCTTCBSCEEEECCTTSCEEECCHHHHHHHHHHHCCSS
T ss_pred eEEEecCCCccHHHHHHHHHHcCCCceEEEeCcccCCHHHHHhCCCCCCCEEEecCCCCceeeeCHHHHHHHHHhhCCCC
Confidence 689999999999999999999999999999998652 27899999999876898 9999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhhhhhhc-CCCCchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHHHHHH
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSVLSFFD-NPKVLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-~g~~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
|.++.+++.+++|+++... +.+.+...+. ......+.+.+.|+.||++|. ++||+|+++|+|||++++.|.+
T Consensus 107 ~L~p~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~T~ADi~l~~~l~~ 185 (246)
T 3rbt_A 107 TLHSHDPYVKAQDRLLIERFNE-LIKGSLECFDTNFAFGSEQIIQTLEIFEKELTNRGTNYFGGNRPGMLDYMVWPWVER 185 (246)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTSSBTTBSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhcCCCcccCCCCCHHHHHHHHHHHH
Confidence 6678899999999998776 3343333332 222226789999999999998 5899999999999999999988
Q ss_pred HhhCCC-----CCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 140 LLSDSK-----VRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 140 ~~~~~~-----~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+..... .......||+|.+|+++|.++|.|++++...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~~~ 227 (246)
T 3rbt_A 186 LYLLRCVNDRKFVEKKSLFPNFADWGDQMQLDDIVKKHAHSP 227 (246)
T ss_dssp HTTHHHHCHHHHHHHHHTCHHHHHHHHHHHHCHHHHHTCCCH
T ss_pred HHHHHhhccccccCChhhChHHHHHHHHHhcCHHHHHhcCCH
Confidence 642110 0112578999999999999999999986544
|
| >4id0_A Glutathione S-transferase-like protein YIBF; GST, enzyme function initiative, structural genomics; HET: GSF; 1.10A {Pseudomonas fluorescens} PDB: 4ibp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-22 Score=212.10 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=141.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc---------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD---------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~---------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.. ..+||.|+||+|+++||.+|+||.||++||.
T Consensus 3 ~~Ly~~~~s~~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~ 82 (214)
T 4id0_A 3 LTLFHNPASPYVRKVMVLLHETGQLNRVALQASQLSPVAPDAALNQDNPLGKIPALRLDNGQVLYDSRVILDYLDQQHVG 82 (214)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCGGGEEEEECCCCSSSCCSSCCTTCTTCCSSEEECTTSCEECSHHHHHHHHHHTSCS
T ss_pred eEEecCCCCChHHHHHHHHHHcCCCcceEEeecccCccCCcHHHHhcCCCcCCCeEEecCCcEeecHHHHHHHHHHhCCC
Confidence 58999999999999999999999999998887642 1268999999997789999999999999985
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhc---CCC---------CchHHHHHHHHHHHHHhc-CCcccCCCCCcc
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFD---NPK---------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVA 129 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~---~g~---------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlA 129 (1175)
|.++.+++++++|+.|..+.+.+.+...+. ... ...+.+.+.|+.||++|. + +|+++|+|
T Consensus 83 ~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~---~G~~~t~A 159 (214)
T 4id0_A 83 NPLIPRDGSARWRRLTLAALADGIMDASVLVRYELALRAPEKHWEQWLDGQRDKIRRALAVLEAEAIAE---LASHFDIA 159 (214)
T ss_dssp SCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHHHHTHHH---HHHCCSHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHHhhhh---ccCCCCHH
Confidence 567789999999999998888776544322 111 123467888999999999 7 79999999
Q ss_pred chhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 130 DICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 130 Di~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
||++++.|.++............||+|.+|+++|.++|.|++++..
T Consensus 160 Di~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~~ 205 (214)
T 4id0_A 160 AISVACALGYLDFRHPDLEWRQDHPQLAAWYFEISQRPSMLATRPP 205 (214)
T ss_dssp HHHHHHHHHHHHHHCTTSCCSSSCHHHHHHHHHHTTSHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcccccccccChHHHHHHHHHHcChhHHhhCCC
Confidence 9999999998754332223467899999999999999999987643
|
| >2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=210.49 Aligned_cols=170 Identities=16% Similarity=0.240 Sum_probs=143.6
Q ss_pred CEEEecCCC-----chHHHHHHHHHhcCCCcEEEEecCc---c---cccCCCCcccEEEeCCCcEEeCHHHHHHHHc---
Q psy7266 1 MKCLSNRNN-----VQTLKLLITAEFSTTKLDVELVDVA---D---ARLLLSKTVPVLELDDGSQLFSANQSCLYLS--- 66 (1175)
Q Consensus 1 m~Ly~~~~s-----p~~~~v~ial~~~gi~~e~~~v~~~---~---~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--- 66 (1175)
|+||+++.| |++++++++|+++|++|+.+.+++. . ..+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 19 ~~Ly~~~~s~~~~~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~yL~~~~ 97 (230)
T 2ycd_A 19 ITVFERSPDGGRGLARDMPVRWALEEVGQPYHVRRLSFEAMKEASHLAYQPFGQIPSYE-QGDLILFESGAIVMHIAQHH 97 (230)
T ss_dssp EEEESSCTTTTSSCSTHHHHHHHHHHHTCCCEEEEECHHHHTSTTGGGTCTTSCSCEEE-ETTEEEECHHHHHHHHHHHS
T ss_pred EEEecCCCccccCCCccHHHHHHHHHcCCCceEEEeCccccCCHHHHhcCCCCCCCEEE-ECCEEEEcHHHHHHHHHHhC
Confidence 579999999 9999999999999999999999863 1 2378999999997 89999999999999985
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhc----CC-C--------CchHHHHHHHHHHHHHhc-CCcccCCCCCc
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFD----NP-K--------VLPDNLKTKLNVLNEAIS-NSFLIENSTTV 128 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g-~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTl 128 (1175)
|.++.+++.+++|+.|..+.+.+.+..++. .. . ...+.+.+.|+.||++|+ ++||+| ++|+
T Consensus 98 ~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G-~~t~ 176 (230)
T 2ycd_A 98 SGLLPEDQLRRARTVAWMFAALNTIEPSILNFTTVWLFERNEPWHEARLARTKEQLLKRLDELSAWLGDREWLEG-SFSA 176 (230)
T ss_dssp SSSSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHTTCSSTTS-SCCH
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCeeec-CCcH
Confidence 677889999999999998888876653321 11 1 113467889999999999 999999 9999
Q ss_pred cchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 129 ADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 129 ADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
|||++++.|.++.... ....||+|.+|+++|.++|.+++++..-
T Consensus 177 ADi~l~~~l~~~~~~~----~~~~~p~l~~w~~~i~~~p~~~~~~~~~ 220 (230)
T 2ycd_A 177 ADILMICVLRRLESSG----ILKDYGNLLAYVERGKARPAFKRAFDAQ 220 (230)
T ss_dssp HHHHHHHHHGGGGGGT----GGGGCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----CccCChHHHHHHHHHHcCHHHHHHHHhh
Confidence 9999999999864321 2578999999999999999999998764
|
| >2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=207.58 Aligned_cols=172 Identities=12% Similarity=0.119 Sum_probs=139.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----------ccC----CCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----------RLL----LSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----------~~~----P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+++++|++|+++|++|+.+.+++.+. ..+ |.|+||+|+ +||.+|+||.||++||.
T Consensus 3 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~g~P~g~vP~L~-d~~~~l~eS~aI~~yL~ 81 (218)
T 2c4j_A 3 MTLGYWNIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLI-DGTHKITQSNAILRYIA 81 (218)
T ss_dssp EEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEE-ETTEEEESHHHHHHHHH
T ss_pred cEEEEeCCCchhHHHHHHHHHcCCCceEEEeecCcccccchhHHhhhccccCCCCCCCCEEE-ECCeEeeeHHHHHHHHH
Confidence 589999999999999999999999999999987532 245 789999996 78999999999999985
Q ss_pred ------CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhH
Q psy7266 67 ------KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 ------p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l 133 (1175)
|.++.+++.+++|+.+... +...+...++... ...+.+.+.|+.||++|+ ++||+|+++|+|||++
T Consensus 82 ~~~~l~p~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l 160 (218)
T 2c4j_A 82 RKHNLCGESEKEQIREDILENQFMD-SRMQLAKLCYDPDFEKLKPEYLQALPEMLKLYSQFLGKQPWFLGDKITFVDFIA 160 (218)
T ss_dssp HHTTCSCCSHHHHHHHHHHHHHHHH-HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCCCcHHHHHH
Confidence 6788899999999887653 2232322222111 223467889999999999 9999999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++.|.++.... ......||+|.+|+++|.++|.+++++...
T Consensus 161 ~~~l~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 201 (218)
T 2c4j_A 161 YDVLERNQVFE--PSCLDAFPNLKDFISRFEGLEKISAYMKSS 201 (218)
T ss_dssp HHHHHHHHHHS--TTTTTTCHHHHHHHHHHHHSHHHHHHHHST
T ss_pred HHHHHHHHhhC--HHhHhhchHHHHHHHHHHhCHHHHHHHhcC
Confidence 99998865332 134578999999999999999999987653
|
| >1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.9e-21 Score=204.22 Aligned_cols=168 Identities=14% Similarity=0.130 Sum_probs=139.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc------cc-----cCCCCcccEEEeCCCcEEeCHHHHHHHHc---
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD------AR-----LLLSKTVPVLELDDGSQLFSANQSCLYLS--- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~------~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--- 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.. .. +||.|+||+|+ +||.+|+||.+|++||.
T Consensus 5 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~P~g~vP~L~-~~g~~l~eS~aI~~yL~~~~ 83 (211)
T 1okt_A 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQ-IGDLILAQSQAIVRYLSKKY 83 (211)
T ss_dssp EEEEEESSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEE-ETTEEEECHHHHHHHHHHHT
T ss_pred cEEEEECCCchhHHHHHHHHHcCCCceeeeccCCHHHHHHHhhccccccCCCCCCCEEE-ECCEEeehHHHHHHHHHHHc
Confidence 58999999999999999999999999999997532 23 89999999997 78999999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhhhhhhcCC--CCc-----hHHHHHHHHHHHHHhc-C--C------cccCCCCC
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSVLSFFDNP--KVL-----PDNLKTKLNVLNEAIS-N--S------FLIENSTT 127 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g--~~~-----~~~l~~~L~~Le~~L~-~--~------fLvG~~lT 127 (1175)
|.++.+++.+++|+++..+ +.+. +.... ... .+.+.+.|+.||++|. + + ||+|+++|
T Consensus 84 ~l~p~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~~~~~l~G~~~t 159 (211)
T 1okt_A 84 NICGESELNEFYADMIFCGVQD-IHYK---FNNTNLFKQNETTFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLT 159 (211)
T ss_dssp TCSCSSHHHHHHHHHHHHHHHH-HHHH---HTTCCTTTTCHHHHHHTHHHHHHHHHHHHHHHTCSSCCTTCCCSSTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-HHHH---HhccchHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCcccCcccccCCCCC
Confidence 7788899999999999875 4431 11111 111 2457889999999999 6 5 99999999
Q ss_pred ccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 128 VADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 128 lADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+|||++++.|.++..... .....||+|.+|+++|.++|.+++++..
T Consensus 160 ~ADi~l~~~l~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 205 (211)
T 1okt_A 160 YADLAVFNLYDDIETKYP--SSLKNFPLLKAHNEFISNLPNIKNYITN 205 (211)
T ss_dssp HHHHHHHHHHHHHHTTSC--CTTTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCc--cccccChHHHHHHHHHHhCHHHHHHHHc
Confidence 999999999998754322 3467899999999999999999998865
|
| >3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=209.46 Aligned_cols=171 Identities=17% Similarity=0.267 Sum_probs=139.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--ccC-----CCCcccEEEeCCCcEEeCHHHHHHHHc------C
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--RLL-----LSKTVPVLELDDGSQLFSANQSCLYLS------K 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--~~~-----P~g~vP~L~~~dG~~l~eS~aI~~YL~------p 67 (1175)
|+||+++.||++++++++|.++|++|+.+.++..+. .+| |+|+||+|+ +||.+|+||.||++||. |
T Consensus 5 ~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~p~~~~p~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~l~p 83 (222)
T 3ik7_A 5 PKLHYPNGRGRMESVRWVLAAAGVEFDEEFLETKEQLYKLQDGNHLLFQQVPMVE-IDGMKLVQTRSILHYIADKHNLFG 83 (222)
T ss_dssp CEEEECSSCTTTHHHHHHHHHTTCCCEEEECCSHHHHHHHHHTTCSTTSCSCEEE-ETTEEEESHHHHHHHHHHHTTCSC
T ss_pred cEEEEeCCCcchHHHHHHHHHcCCCeeEEeeCcHHHHHHhhhcCCCCCCCCCEEE-ECCEEeehHHHHHHHHHHhCCCCC
Confidence 689999999999999999999999999999987442 244 489999997 68999999999999985 7
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhcCCC---------CchHHHHHHHHHHHHHh--c-CCcccCCCCCccchhHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFDNPK---------VLPDNLKTKLNVLNEAI--S-NSFLIENSTTVADICIWT 135 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~---------~~~~~l~~~L~~Le~~L--~-~~fLvG~~lTlADi~l~~ 135 (1175)
.++.+++.+++|+++... +.+.+....+... .....+.+.|+.||++| . ++||+|+++|+|||++++
T Consensus 84 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~l~~ 162 (222)
T 3ik7_A 84 KNLKERTLIDMYVEGTLD-LLELLIMHPFLKPDDQQKEVVNMAQKAIIRYFPVFEKILRGHGQSFLVGNQLSLADVILLQ 162 (222)
T ss_dssp SSHHHHHHHHHHHHHHHH-HHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSCCSSSSTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHhcCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHCCCceecCCCCCHHHHHHHH
Confidence 888999999999998754 3333322222111 01234677899999999 7 899999999999999999
Q ss_pred HHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 136 ~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
.|.++.... ......||+|.+|+++|.++|.+++++..
T Consensus 163 ~l~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 200 (222)
T 3ik7_A 163 TILALEEKI--PNILSAFPFLQEYTVKLSNIPTIKRFLEP 200 (222)
T ss_dssp HHHHHHHHS--TTTTTTCHHHHHHHHHHHTSHHHHHHHST
T ss_pred HHHHHHhhC--hhhhhcChHHHHHHHHHHcCHHHHHHHcC
Confidence 999876443 23467899999999999999999998864
|
| >3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=211.60 Aligned_cols=171 Identities=19% Similarity=0.288 Sum_probs=139.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.||++||.
T Consensus 27 ~~Ly~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~-~~g~~l~eS~aI~~YL~~~~~~~ 105 (243)
T 3qav_A 27 PFVYWGSGSPPCWKVLLVLQEKKIDYDEKIISFSKKEHKSEEILELNPRGQVPTFT-DGDVVVNESTAICMYLEEKYPKV 105 (243)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEE-ETTEEECSHHHHHHHHHHHCTTS
T ss_pred cEEEeCCCCcchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCEEE-ECCEEEecHHHHHHHHHHHCCCC
Confidence 689999999999999999999999999999987542 268999999996 78899999999999985
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhhhhhhc----C-CC-------CchHHHHHHHHHHHHHhc--CCcccCCCCCcc
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSVLSFFD----N-PK-------VLPDNLKTKLNVLNEAIS--NSFLIENSTTVA 129 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~-g~-------~~~~~l~~~L~~Le~~L~--~~fLvG~~lTlA 129 (1175)
|.++.+++.+++|+.+.. .+.+.+...++ . .. ...+.+.+.|+.||++|. ++||+|+++|+|
T Consensus 106 ~L~p~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~fl~Gd~~T~A 184 (243)
T 3qav_A 106 PLFPSDTTIRAKVYQRMFETS-NISTNVMEFVQYKMKNKDSIDQVLLKEKKDKAHVELGHWENYLKQTGGFVATKEFTMA 184 (243)
T ss_dssp CSSCSCHHHHHHHHHHHHHTH-HHHHHTHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSSSCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHhc-ccchhhhhhhhhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCcHH
Confidence 567789999999997654 33333322211 1 11 123467888999999998 899999999999
Q ss_pred chhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 130 DICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 130 Di~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
||++++.|.++..... .....||+|.+|+++|.++|.|++++..
T Consensus 185 Di~l~~~l~~~~~~~~--~~~~~~P~L~~w~~r~~~~p~~~~~~~~ 228 (243)
T 3qav_A 185 DVFFFPMVALIVRQGA--NLKDSYPNIFKYYNMMMDRPTIVKTMPP 228 (243)
T ss_dssp HHHHHHHHHHHHHTTC--CCTTTSHHHHHHHHHHHTSHHHHHTSCG
T ss_pred HHHHHHHHHHHHHcCC--ccccCCchHHHHHHHHHcChHHHhhCCC
Confidence 9999999998754432 2347899999999999999999987654
|
| >1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=208.64 Aligned_cols=175 Identities=13% Similarity=0.156 Sum_probs=143.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCC-CcccEEEeCCCcEEeCHHHHHHHHc--------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLS-KTVPVLELDDGSQLFSANQSCLYLS-------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~-g~vP~L~~~dG~~l~eS~aI~~YL~-------- 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++... .+||. |+||+|+ +||.+|+||.+|++||.
T Consensus 7 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~~ 85 (230)
T 1gwc_A 7 LKLLGAWPSPFVTRVKLALALKGLSYEDVEEDLYKKSELLLKSNPVHKKIPVLI-HNGAPVCESMIILQYIDEVFASTGP 85 (230)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHSTTTCCSCEEE-ETTEEEESHHHHHHHHHHHTTTSSC
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCCeEEecccccCCHHHHhhCCCCCccCEEE-ECCEEeecHHHHHHHHHHhcCCCCC
Confidence 689999999999999999999999999999987532 26897 9999996 78999999999999995
Q ss_pred ---CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHhc-----CCcccCCCCCccchhH
Q psy7266 67 ---KFDTKNESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAIS-----NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 ---p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L~-----~~fLvG~~lTlADi~l 133 (1175)
|.++.+++.+++|+.|..+.+.+.+..++.... ...+.+.+.|+.||++|. ++||+|+++|+|||++
T Consensus 86 ~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~fl~G~~~t~ADi~l 165 (230)
T 1gwc_A 86 SLLPADPYERAIARFWVAYVDDKLVAPWRQWLRGKTEEEKSEGKKQAFAAVGVLEGALRECSKGGGFFGGDGVGLVDVAL 165 (230)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCBTTBTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeCCCCCCHHHHHH
Confidence 235678999999999999888887666554211 123467889999999996 4899999999999999
Q ss_pred HHHHHHHhhC----CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 134 WTCVYPLLSD----SKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 134 ~~~L~~~~~~----~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++.|.++... .........||+|.+|+++|.++|.+++++...
T Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 212 (230)
T 1gwc_A 166 GGVLSWMKVTEALSGDKIFDAAKTPLLAAWVERFIELDAAKAALPDV 212 (230)
T ss_dssp HTTHHHHHHHHHHHSCCTTCTTTCHHHHHHHHHHHHSHHHHHHSCCH
T ss_pred HHHHHHHHHHHHhcCCCcCChhhCHHHHHHHHHHhcCchhhhccCCH
Confidence 9999886421 111123568999999999999999999876544
|
| >1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=206.64 Aligned_cols=170 Identities=19% Similarity=0.224 Sum_probs=138.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----cc--CCCCcccEEEeCCCcEEeCHHHHHHHHc------C
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RL--LLSKTVPVLELDDGSQLFSANQSCLYLS------K 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~--~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p 67 (1175)
|+||+++.||++++++++|+++|++|+.+.++..+. .. ||.|+||+|+ +||.+|+||.+|++||. |
T Consensus 4 ~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~nP~g~vPvL~-~~g~~l~eS~aI~~yL~~~~~L~p 82 (221)
T 1k3y_A 4 PKLHYFNARGRMESTRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVE-IDGMKLVQTRAILNYIASKYNLYG 82 (221)
T ss_dssp CEEEEESSSTTTHHHHHHHHHHTCCCEEEEECSHHHHHHHHHTTCCTTSCSCEEE-ETTEEEESHHHHHHHHHHHTTCSC
T ss_pred cEEEEeCCCchhHHHHHHHHHcCCCceEEEeCchhHHHHHhhhcCCCCCCCCEEE-ECCEEEecHHHHHHHHHHHcCCCC
Confidence 689999999999999999999999999999885321 14 9999999997 78899999999999985 7
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhcCCC---------CchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFDNPK---------VLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWT 135 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~---------~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~ 135 (1175)
.++.+++.+++|+++.... .+.+....+.+. .....+.+.|+.||++|. ++||+|+++|+|||++++
T Consensus 83 ~~~~~ra~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~l~~ 161 (221)
T 1k3y_A 83 KDIKERALIDMYIEGIADL-GEMILLLPVCPPEEKDAKLALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIHLVE 161 (221)
T ss_dssp SSHHHHHHHHHHHHHHHHH-HHHHHHGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSSSSTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCcccHHHHHHHH
Confidence 7888999999999988653 332222222111 112456778999999995 799999999999999999
Q ss_pred HHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 136 ~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
.|.++.... ......||+|.+|+++|.++|.+++++.
T Consensus 162 ~l~~~~~~~--~~~~~~~p~l~~w~~~i~~~p~~~~~~~ 198 (221)
T 1k3y_A 162 LLYYVEELD--SSLISSFPLLKALKTRISNLPTVKKFLQ 198 (221)
T ss_dssp HHHHHHHHC--TTTTTTCHHHHHHHHHHHHSHHHHHHHS
T ss_pred HHHHHHhcC--chhhhcCchHHHHHHHHHhCHHHHHHHH
Confidence 999864322 2345789999999999999999998774
|
| >4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-21 Score=210.83 Aligned_cols=172 Identities=16% Similarity=0.235 Sum_probs=139.1
Q ss_pred EEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---C----
Q psy7266 3 CLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS---K---- 67 (1175)
Q Consensus 3 Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p---- 67 (1175)
||+++ ||+++++|++|.++|++|+.+.+++... .+||.|+||+|+.+||.+|+||.||++||. +
T Consensus 6 Ly~~~-s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~dg~~l~eS~aI~~yL~~~~~~~~~ 84 (238)
T 4exj_A 6 LYTGP-TGNGRKPLVLGKLLNAPIKVHMFHWPTKDIQEDWYLKLNPAGIVPTLVDDKGTPITESNNILLYIADTYDKEHK 84 (238)
T ss_dssp EEECS-STTTHHHHHHHHHTTCSEEEEECC-CCSGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHHHHCTTCS
T ss_pred EeeCC-CCchHHHHHHHHHcCCCceEEEecccCCccCCHHHHhhCCCCCCCEEEeCCCcEEeeHHHHHHHHHHhcCCCCc
Confidence 78888 9999999999999999999999998532 268999999998768999999999999995 2
Q ss_pred ------CChHHHHHHHHHHHHHhhhchh-hhhhhhc---CC-C------CchHHHHHHHHHHHHHhc-CCcccCCCCCcc
Q psy7266 68 ------FDTKNESAINQWLEWESVELFP-SVLSFFD---NP-K------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVA 129 (1175)
Q Consensus 68 ------~~~~~~a~v~~wl~~~~~~l~p-~~~~~~~---~g-~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlA 129 (1175)
.++.+++.+++|+.|..+.+.+ .+..+.. .. . ...+.+.+.|+.||++|+ ++||+|+++|+|
T Consensus 85 L~~pl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~T~A 164 (238)
T 4exj_A 85 FFYSLKQDPKLYWEQNELLFYQATQFQSQTLTIANANYQNGHIDENIAQYVLSSFEKVFAFMETKLSGRDWFVGDKFTIV 164 (238)
T ss_dssp SCCCTTTCHHHHHHHHHHHHHHHHTTTTTTHHHHHHHCBTTBCCHHHHHHHHHHHHHHHHHHHHHTTTCSSSSTTSCCHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhccCCeecCCCCCHH
Confidence 3557899999999999988887 4433221 11 1 123467889999999999 999999999999
Q ss_pred chhHH-HHHHHHhhCCCC---CCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 130 DICIW-TCVYPLLSDSKV---RPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 130 Di~l~-~~L~~~~~~~~~---~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
||+++ +.+.++...... ......||+|.+|+++|.++|.+++++.+
T Consensus 165 Di~l~~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~~ 214 (238)
T 4exj_A 165 DIAFLVGEHRRRERLHNSPIWIDLKENFPNVEKWFQRAIAFENVEEILKE 214 (238)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCHHHHCHHHHHHHHHHHHSTTHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCccchhhhhcChHHHHHHHHHHcChhHHHHHhc
Confidence 99999 988886533221 11234899999999999999999998764
|
| >1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=211.18 Aligned_cols=175 Identities=14% Similarity=0.178 Sum_probs=141.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---RLLLSKTVPVLELDDGSQLFSANQSCLYLS----------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----------- 66 (1175)
|+||+ ..||++++++++|+++|++|+.+.++.... .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 4 ~~Ly~-~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~~~~~ 82 (219)
T 1nhy_A 4 GTLYA-NFRIRTWVPRGLVKALKLDVKVVTPDAAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYYLVKLSQDDKMKTQ 82 (219)
T ss_dssp CEEEC-CSSHHHHHHHHHHHHHTCCCEEECGGGCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHHHHHHCCCHHHHHH
T ss_pred eEEec-CCCCChHHHHHHHHHcCCCceeecccCCCHHHHHHCCCCCCCeEEcCCCCEEecHHHHHHHHHHhCCCcccccc
Confidence 68999 679999999999999999999988872221 378999999997658999999999999985
Q ss_pred --CCC--hHHHHHHHHHHHHHhhhchhhhhhhhc--CCC---------CchHHHHHHHHHHHHHhc-CCcccCCCCCccc
Q psy7266 67 --KFD--TKNESAINQWLEWESVELFPSVLSFFD--NPK---------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVAD 130 (1175)
Q Consensus 67 --p~~--~~~~a~v~~wl~~~~~~l~p~~~~~~~--~g~---------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlAD 130 (1175)
|.+ +.+++.+++|+.|..+.+.+.+..++. .+. ...+.+.+.|+.||++|+ ++||+|+++|+||
T Consensus 83 L~p~~~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~AD 162 (219)
T 1nhy_A 83 LLGADDDLNAQAQIIRWQSLANSDLCIQIANTIVPLKGGAPYNKKSVDSAMDAVDKIVDIFENRLKNYTYLATENISLAD 162 (219)
T ss_dssp HTCCTTCHHHHHHHHHHHHHHHTTTTGGGGGTHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHH
T ss_pred cCCCCCchHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCceecCCcCCHHH
Confidence 234 678999999999998888776654432 121 123467889999999999 9999999999999
Q ss_pred hhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 131 ICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 131 i~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
|++++.|.++............||+|.+|+++|.++|.+++++...
T Consensus 163 i~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 208 (219)
T 1nhy_A 163 LVAASIFTRYFESLFGTEWRAQHPAIVRWFNTVRASPFLKDEYKDF 208 (219)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHCHHHHHHHHHHHHSTTTGGGCTTC
T ss_pred HHHHHHHHHHHhccccchHHHcChHHHHHHHHHHhCHHHHHHhccc
Confidence 9999999986422221122567999999999999999998876543
|
| >3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=202.50 Aligned_cols=169 Identities=13% Similarity=0.112 Sum_probs=132.6
Q ss_pred CEEEecC--CCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc----
Q psy7266 1 MKCLSNR--NNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS---- 66 (1175)
Q Consensus 1 m~Ly~~~--~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---- 66 (1175)
|+||+++ .||++++|+++|.++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 7 ~~Ly~~~~~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~ 85 (215)
T 3bby_A 7 ITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQ-IDDFELSESSAIAEYLEDRFA 85 (215)
T ss_dssp EEEEEETTSCCHHHHHHHHHHHHHTCCCEEEEEC------------------CCCEEE-ETTEEEESHHHHHHHHHHHSC
T ss_pred EEEEecCCCCCcHHHHHHHHHHHcCCCCEEEEecCccccccCHHHHhhCCCCCCCEEE-eCCeEeecHHHHHHHHHHhCC
Confidence 5799998 89999999999999999999999987531 268999999997 68899999999999985
Q ss_pred --------CCChHHHHHHHHHHHHHhhhchhhhhhh----hcCC---C----CchHHHHHHHHHHHHHhc--CCcccCCC
Q psy7266 67 --------KFDTKNESAINQWLEWESVELFPSVLSF----FDNP---K----VLPDNLKTKLNVLNEAIS--NSFLIENS 125 (1175)
Q Consensus 67 --------p~~~~~~a~v~~wl~~~~~~l~p~~~~~----~~~g---~----~~~~~l~~~L~~Le~~L~--~~fLvG~~ 125 (1175)
|.++.+++.+++|+.|..+.+.+.+... ++.+ . ...+.+.+.|+.||++|. ++||+|+
T Consensus 86 ~~~~~~L~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~- 164 (215)
T 3bby_A 86 PPTWERIYPLDLENRARARQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLVLGQPNLFGE- 164 (215)
T ss_dssp TTTSCCCSCSSHHHHHHHHHHHHHHHHSCHHHHHHSCTHHHHSCCCCCCCCHHHHHHHHHHHHHHHHHTTTCCSSTTSS-
T ss_pred CCCCCccCCCCHHHHHHHHHHHHHHHhhHHHHHhhccchhhccccCCccccHHHHHHHHHHHHHHHHHHccCCCeeeCC-
Confidence 2356789999999999988887754321 1111 1 224578899999999997 7899998
Q ss_pred CCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 126 lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
+|+|||++++.|.++.... ...+|+|.+|+++|.++|.+++++...
T Consensus 165 ~t~ADi~l~~~l~~~~~~~-----~~~~p~l~~~~~~~~~rp~~~~~~~~~ 210 (215)
T 3bby_A 165 WCIADTDLALMINRLVLHG-----DEVPERLVDYATFQWQRASVQRFIALS 210 (215)
T ss_dssp CCHHHHHHHHHHHHHHTTT-----CCCCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 9999999999999865332 134699999999999999999998765
|
| >1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-21 Score=212.23 Aligned_cols=175 Identities=13% Similarity=0.130 Sum_probs=143.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCC-CcccEEEeCCCcEEeCHHHHHHHHc--------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLS-KTVPVLELDDGSQLFSANQSCLYLS-------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~-g~vP~L~~~dG~~l~eS~aI~~YL~-------- 66 (1175)
|+||+++.||++++|+++|.++|++|+.+.+++... .+||. |+||+|+ +||.+|+||.+|++||.
T Consensus 7 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~~ 85 (231)
T 1oyj_A 7 LVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLL-HAGRPVSESLVILQYLDDAFPGTPH 85 (231)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHSTTTCCSCEEE-ETTEEEESHHHHHHHHHHHCTTSCC
T ss_pred eEEEeCCCChHHHHHHHHHHHCCCCCeEEecCcccCCHHHHhhCCCCCCCCEEE-ECCEEEecHHHHHHHHHHhCCCCCC
Confidence 589999999999999999999999999999987532 27898 8999997 68999999999999995
Q ss_pred --CC-------ChHHHHHHHHHHHHHhhhchhhhhhhhcCCC----CchHHHHHHHHHHHHHhc-CCcccC---CCCCcc
Q psy7266 67 --KF-------DTKNESAINQWLEWESVELFPSVLSFFDNPK----VLPDNLKTKLNVLNEAIS-NSFLIE---NSTTVA 129 (1175)
Q Consensus 67 --p~-------~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~----~~~~~l~~~L~~Le~~L~-~~fLvG---~~lTlA 129 (1175)
|. ++.+++.+++|+.|..+.+.+.+..++.... .....+.+.|+.||++|. ++||+| +++|+|
T Consensus 86 L~p~~~~~~~~~~~~ra~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~~~~t~A 165 (231)
T 1oyj_A 86 LLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFV 165 (231)
T ss_dssp SSCCSTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCSCCHH
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCCCCHH
Confidence 33 5678899999999998878777665543211 223567889999999999 999999 999999
Q ss_pred chhHHHHHHHHhhC--CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 130 DICIWTCVYPLLSD--SKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 130 Di~l~~~L~~~~~~--~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
||++++.|.++... .........||+|.+|+++|.++|.+++++...
T Consensus 166 Di~l~~~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 214 (231)
T 1oyj_A 166 DVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVVKHLPSP 214 (231)
T ss_dssp HHHHGGGGGGHHHHHHHHTCCHHHHCHHHHHHHHHHTTSHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccChHHHHHHHHHhcChHHHHhccCH
Confidence 99999998875321 111112467999999999999999999876543
|
| >1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-21 Score=207.06 Aligned_cols=170 Identities=19% Similarity=0.245 Sum_probs=137.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----cc--CCCCcccEEEeCCCcEEeCHHHHHHHHc------C
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RL--LLSKTVPVLELDDGSQLFSANQSCLYLS------K 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~--~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p 67 (1175)
|+||+++.||++++++++|+++|++|+.+.++..+. .. ||.|+||+|+ +||.+|+||.||++||. |
T Consensus 4 ~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~YL~~~~~L~p 82 (221)
T 1b48_A 4 PKLYYFNGRGRMESIRWLLAAAGVEFEEEFLETREQYEKMQKDGHLLFGQVPLVE-IDGMMLTQTRAILSYLAAKYNLYG 82 (221)
T ss_dssp CEEEBCSSCTTTHHHHHHHHHHTCCCCCCBCCCHHHHHHHHTTTCSSSSCSCEEE-ETTEEECCHHHHHHHHHHHTTCSC
T ss_pred eEEEEeCCCcchHHHHHHHHHcCCCceEEEeCchHhHHHHHhcCCCCCCCCCEEE-ECCEEEecHHHHHHHHHHhCCCCC
Confidence 689999999999999999999999999988874321 14 9999999997 68899999999999985 7
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhcCCC---------CchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFDNPK---------VLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWT 135 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~---------~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~ 135 (1175)
.++.+++.+++|+++....+ +.+....+.+. .....+.+.|+.||++|. ++||+|+++|+|||++++
T Consensus 83 ~~~~~ra~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~l~~ 161 (221)
T 1b48_A 83 KDLKERVRIDMYADGTQDLM-MMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLSWADIQLLE 161 (221)
T ss_dssp SSHHHHHHHHHHHHHHHHHH-HHHHHGGGSCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSSSSSSSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEeeCCCCCHHHHHHHH
Confidence 78889999999999887533 32222222111 113356788999999995 789999999999999999
Q ss_pred HHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 136 ~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
.|.++.... ......||+|.+|+++|.++|.+++++.
T Consensus 162 ~l~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 198 (221)
T 1b48_A 162 AILMVEELS--APVLSDFPLLQAFKTRISNIPTIKKFLQ 198 (221)
T ss_dssp HHHHHHTTC--TTGGGGCHHHHHHHHHHHTSHHHHHHHS
T ss_pred HHHHHhhcC--chhhhcChHHHHHHHHHHhCHHHHHHHh
Confidence 999864321 2345789999999999999999998875
|
| >1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-21 Score=207.08 Aligned_cols=170 Identities=17% Similarity=0.231 Sum_probs=137.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--c---c--CCCCcccEEEeCCCcEEeCHHHHHHHHc------C
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--R---L--LLSKTVPVLELDDGSQLFSANQSCLYLS------K 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--~---~--~P~g~vP~L~~~dG~~l~eS~aI~~YL~------p 67 (1175)
|+||+++.||++++++++|.++|++|+.+.++..+. + . ||.|+||+|+ +||.+|+||.||++||. |
T Consensus 5 ~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~eS~aI~~YL~~~~~L~p 83 (229)
T 1vf1_A 5 PVLYYFNGRGKMESIRWLLAAAGVEFEEVFLETREQYEKLLQSGILMFQQVPMVE-IDGMKLVQTRAILNYIAGKYNLYG 83 (229)
T ss_dssp CEEEECSSCTTTHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHTCSTTSCSCEEE-ETTEEEESHHHHHHHHHHHTTCSC
T ss_pred eEEEEeCCCchhHHHHHHHHHcCCCCeeEecCcHHHHHHHHHhcCCCCCCCCEEE-ECCEEEEcHHHHHHHHHHhCCCCC
Confidence 689999999999999999999999999999885321 1 3 9999999997 78899999999999985 7
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhcCCC---------CchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFDNPK---------VLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWT 135 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~---------~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~ 135 (1175)
.++.+++.+++|+++....+ ..+....+.+. ...+.+.+.|+.||++|. ++||+|+++|+|||++++
T Consensus 84 ~~~~~~a~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ADi~l~~ 162 (229)
T 1vf1_A 84 KDLKERALIDMYVGGTDDLM-GFLLSFPFLSAEDKVKQCAFVVEKATSRYFPAYEKVLKDHGQDFLVGNRLSWADIHLLE 162 (229)
T ss_dssp SSHHHHHHHHHHHHHHHHHH-HTTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSSSSTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCcHHHHHHHH
Confidence 78889999999999887533 22221111111 112356778999999995 799999999999999999
Q ss_pred HHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 136 ~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
.|.++.... ......||+|.+|+++|.++|.+++++.
T Consensus 163 ~l~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 199 (229)
T 1vf1_A 163 AILMVEEKK--SDALSGFPLLQAFKKRISSIPTIKKFLA 199 (229)
T ss_dssp HHHHHHHHC--TTTTTTCHHHHHHHHHHHHSHHHHHHHS
T ss_pred HHHHHHhcC--cchhhhChHHHHHHHHHHhChHHHHHHh
Confidence 999864332 2346789999999999999999998774
|
| >1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=208.77 Aligned_cols=172 Identities=18% Similarity=0.251 Sum_probs=138.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeC--CCcEEeCHHHHHHHHc----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELD--DGSQLFSANQSCLYLS---- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~--dG~~l~eS~aI~~YL~---- 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++..+ .+||.|+||+|+.+ ||.+|+||.||++||.
T Consensus 20 ~~Ly~~~~~p~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~ES~aI~~YL~~~~~ 99 (260)
T 1k0d_A 20 YTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILLHLVNKYY 99 (260)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHHHHHHHH
T ss_pred EEEEcCCCCccHHHHHHHHHHCCCCceEEEecCccccccCHHHHhhCCCCCcCEEEecCCCCeEEECHHHHHHHHHHHcc
Confidence 589999999999999999999999999999987532 27899999999864 8999999999999984
Q ss_pred ---------CCChHHHHHHHHHHHHHhhhchhhhhhhh----cCCCC-------chHHHHHHHHHHHHHhc-C-------
Q psy7266 67 ---------KFDTKNESAINQWLEWESVELFPSVLSFF----DNPKV-------LPDNLKTKLNVLNEAIS-N------- 118 (1175)
Q Consensus 67 ---------p~~~~~~a~v~~wl~~~~~~l~p~~~~~~----~~g~~-------~~~~l~~~L~~Le~~L~-~------- 118 (1175)
|.++.+++.+++|+.|..+.+.+.+..++ ..... ..+.+.+.|..||++|. +
T Consensus 100 ~~~~~~~L~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~~ 179 (260)
T 1k0d_A 100 KETGNPLLWSDDLADQSQINAWLFFQTSGHAPMIGQALHFRYFHSQKIASAVERYTDEVRRVYGVVEMALAERREALVME 179 (260)
T ss_dssp HHHSCCTTSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCCCcCCCCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhh
Confidence 34667899999999999888877654331 11111 12456777888888875 4
Q ss_pred -------------------------CcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 119 -------------------------SFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 119 -------------------------~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
+||+|+++|+|||++++.+.++.... ......||+|.+|+++|.++|.|++++
T Consensus 180 l~~~~~~~~~~~~~~L~~~~~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~--~~~~~~~p~l~~w~~~i~~rp~~~~~~ 257 (260)
T 1k0d_A 180 LDTENAAAYSAGTTPMSQSRFFDYPVWLVGDKLTIADLAFVPWNNVVDRIG--INIKIEFPEVYKWTKHMMRRPAVIKAL 257 (260)
T ss_dssp ---------------------CCCCCCSSTTSCCHHHHTTHHHHTTGGGGT--CCHHHHCHHHHHHHHHHHTCHHHHHHC
T ss_pred cchhhhhhhhhhhhhhhhhccccCCCcccCCCCCHHHHHHHHHHHHHHhcC--CCccccChHHHHHHHHHHcCHHHHHHh
Confidence 79999999999999999988754322 122357999999999999999999876
Q ss_pred H
Q psy7266 174 K 174 (1175)
Q Consensus 174 ~ 174 (1175)
.
T Consensus 258 ~ 258 (260)
T 1k0d_A 258 R 258 (260)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=211.70 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=140.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--c------ccC-CCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--A------RLL-LSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--~------~~~-P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.||+++++|++|+++|++|+.+.+++.. . .+| |.|+||+|+ +||.+|+||.||++||.
T Consensus 2 ~~Lyy~~~s~~~~~vr~~L~e~gi~ye~~~v~~~~~~~~~~~~~~ln~P~gkVPvL~-d~g~~l~ES~aI~~YL~~~~~l 80 (280)
T 1b8x_A 2 PILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYI-DGDVKLTQSMAIIRYIADKHNM 80 (280)
T ss_dssp CCCEEESSSTTTHHHHHHHHHTTCCCCCEEECSSTTTTTTSSTTTTCCSSCCSSBEE-CSSCEECSHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCchHHHHHHHHHHcCCCcEEEEeCCCChhhhhhhhhccCCCCCCCCEEE-ECCEEEEcHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999998642 1 145 999999997 88999999999999996
Q ss_pred -CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHH
Q psy7266 67 -KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 67 -p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
|.++.+++.+++|+.+.. .+.+.+..+++... ...+.+.+.|+.||++|+ ++||+|+++|+|||++++.|.
T Consensus 81 ~p~~~~~ra~v~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fl~Gd~~TlADi~l~~~l~ 159 (280)
T 1b8x_A 81 LGGCPKERAEISMLEGAVL-DIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALD 159 (280)
T ss_dssp SCSSHHHHHHHHHHHHHHH-HHHHHHHHHSSSTTHHHHHHHHTTTHHHHHHHHHGGGTTCSBTTBTSCCTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHH
Confidence 678889999999998764 45554444333211 113357889999999999 999999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
++.... ......||+|.+|+++|.++|.+++++..
T Consensus 160 ~~~~~~--~~~~~~~P~L~~w~~rv~~rP~~~~~~~~ 194 (280)
T 1b8x_A 160 VVLYMD--PMCLDAFPKLVCFKKRIEAIPQIDKYLKS 194 (280)
T ss_dssp HHHHHC--TTTTTTCTTHHHHHHHHHTSHHHHTTTTS
T ss_pred HHHhhC--hhhhhhChHHHHHHHHHHhCHHHHHHHhc
Confidence 865432 13457899999999999999999987654
|
| >2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=202.67 Aligned_cols=173 Identities=17% Similarity=0.254 Sum_probs=139.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~------ 66 (1175)
++||+++.||++++|+++|.++|++|+.+.+++..+ .+||.|+||+|+ +||.+|+||.||++||.
T Consensus 10 ~~ly~~~~sp~~rkv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~gkVPvL~-d~g~~l~ES~aI~~YL~~~~~~~ 88 (247)
T 2c3n_A 10 LELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALK-DGDFTLTESVAILLYLTRKYKVP 88 (247)
T ss_dssp EEEEECTTSHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEE-ETTEEEECHHHHHHHHHHHTTCC
T ss_pred eEEeecCCChhHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCcCcEEE-ECCEEEEcHHHHHHHHHHhcCCC
Confidence 379999999999999999999999999999997542 278999999997 88999999999999985
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhc--------CCCC--------chHHHHHHHHHHHHH-hc-CCcccCC
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFD--------NPKV--------LPDNLKTKLNVLNEA-IS-NSFLIEN 124 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~--------~g~~--------~~~~l~~~L~~Le~~-L~-~~fLvG~ 124 (1175)
|.++.+++.+++|+.|....+.+.+...++ .+.. ....+.+.|+.||++ |+ ++||+|+
T Consensus 89 ~~L~p~~~~~ra~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~lL~~~~fl~G~ 168 (247)
T 2c3n_A 89 DYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGP 168 (247)
T ss_dssp GGGSCSSHHHHHHHHHHHHHGGGTHHHHHHHHHHHHTCCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTTSSSSSSS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCEecCC
Confidence 456778999999999998777665543221 0211 123578899999996 78 9999999
Q ss_pred CCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 125 STTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 125 ~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++|+|||++++.+.++..... .....||+|.+|+++|.++|.+....+..
T Consensus 169 ~~T~ADi~~~~~l~~~~~~~~--~~~~~~P~L~~w~~r~~~~p~~~~~~~~~ 218 (247)
T 2c3n_A 169 HISLADLVAITELMHPVGAGC--QVFEGRPKLATWRQRVEAAVGEDLFQEAH 218 (247)
T ss_dssp SCCHHHHHHHHHHHHHHHTTC--CSSTTCHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhcCC--chhhcChhHHHHHHHHHhccCchhHHHHH
Confidence 999999999998887543222 23578999999999999999875544433
|
| >3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-20 Score=205.17 Aligned_cols=172 Identities=20% Similarity=0.346 Sum_probs=136.8
Q ss_pred CEEEecCCCchHHHHHHHHHhc------CCCcEEEEecCccc--------ccCCCCcccEEEeCCC---cEEeCHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFS------TTKLDVELVDVADA--------RLLLSKTVPVLELDDG---SQLFSANQSCL 63 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~------gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG---~~l~eS~aI~~ 63 (1175)
|+||+++ ||++++|+++|.++ |++|+.+.+++..+ .+||.|+||+|+.+|| .+|+||.+|++
T Consensus 45 ~~Ly~~~-sp~~~rvr~~L~e~~~~g~kgi~ye~~~v~~~~~e~~~~~~~~~nP~gkVPvL~~~~g~~~~~l~ES~aI~~ 123 (288)
T 3c8e_A 45 LQLYSLG-TPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPIRVFESGSILL 123 (288)
T ss_dssp EEEEECS-SHHHHHHHHHHHHHHHTTCGGGCEEEEECCGGGTGGGBHHHHHHCTTCCSCEEEETTSSSCEEEESHHHHHH
T ss_pred eEEecCC-CCChHHHHHHHHHhhhcccCCCCcEEEEeccccccccCHHHHHhCCCCCCCEEEeCCCCCceEEeCHHHHHH
Confidence 5899875 99999999999998 99999999987542 2789999999987663 89999999999
Q ss_pred HHc-------CCChHHHHHHHHHHHHHhhhchhhh----hhhhc-CCC-------CchHHHHHHHHHHHHHhc-CCcccC
Q psy7266 64 YLS-------KFDTKNESAINQWLEWESVELFPSV----LSFFD-NPK-------VLPDNLKTKLNVLNEAIS-NSFLIE 123 (1175)
Q Consensus 64 YL~-------p~~~~~~a~v~~wl~~~~~~l~p~~----~~~~~-~g~-------~~~~~l~~~L~~Le~~L~-~~fLvG 123 (1175)
||. |.++.+++.+++|+.|....+ +.+ ..++. ... .....+.+.|+.||++|. ++||+|
T Consensus 124 YL~~~~~~L~p~d~~~ra~v~~wl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Le~~L~~~~fl~G 202 (288)
T 3c8e_A 124 YLAEKFGYFLPQDLAKRTETMNWLFWLQGAA-PFLGGGFGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAG 202 (288)
T ss_dssp HHHHHHCCSSCSSHHHHHHHHHHHHHHHHHH-HHHHHTHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCSBTTB
T ss_pred HHHHhcCccCCCCHHHHHHHHHHHHHHhccC-chHHHHHHHHHhhCccccHHHHHHHHHHHHHHHHHHHHHHccCCcccC
Confidence 985 677889999999999887642 221 11111 111 113457889999999999 999999
Q ss_pred CCCCccchhHHHHHHHHhhC----CCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 124 NSTTVADICIWTCVYPLLSD----SKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 124 ~~lTlADi~l~~~L~~~~~~----~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
+++|+|||++++.|.++... .........||+|.+|+++|.++|.|++++.
T Consensus 203 d~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~~~~~~ 257 (288)
T 3c8e_A 203 DEYTIADMAIWPWFGNVVLGGVYDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRI 257 (288)
T ss_dssp SSCCHHHHHHTTTHHHHHHTCSTTCTTTTTGGGCHHHHHHHHHHHTSHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHhhccccccccCCchhCHHHHHHHHHHHcCHHHHHHhc
Confidence 99999999999999886431 1111345789999999999999999998764
|
| >3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-20 Score=203.52 Aligned_cols=172 Identities=14% Similarity=0.102 Sum_probs=135.6
Q ss_pred CEEEecC-CCchHHHHHHHHHhcCCCcEEEEecCcc-------c--ccCCCCcccEEEeCCCcEEeCHHHHHHHHc----
Q psy7266 1 MKCLSNR-NNVQTLKLLITAEFSTTKLDVELVDVAD-------A--RLLLSKTVPVLELDDGSQLFSANQSCLYLS---- 66 (1175)
Q Consensus 1 m~Ly~~~-~sp~~~~v~ial~~~gi~~e~~~v~~~~-------~--~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---- 66 (1175)
|+||+++ .++++++||++|+++|++|+.+.++... . .+||+ +||+|+ +||.+|+||.||++||+
T Consensus 22 ~~L~y~~g~~~~a~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~k~~nP~-kVPvL~-d~g~~l~ES~AI~~YL~~~~~ 99 (252)
T 3h1n_A 22 YDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLDDMRRRRDTPPF-APPYLV-ADGMTIAQTANILLFLGVEHG 99 (252)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHTCCEEEGGGSTTCCHHHHHTSCCSSCCS-SSCEEE-ETTEEEESHHHHHHHHHHHHS
T ss_pred eEEEeCCCCCcchHHHHHHHHhCCCCceEEeecCchhhHHHHhhccCCCCC-CCCEEE-ECCEEeecHHHHHHHHHHhcC
Confidence 5899999 5999999999999999999998887321 1 47899 999997 78999999999999986
Q ss_pred --CCChHHHHHHHHHHHHHhhhchhhhhhhhc-------CCCC-----------chHHHHHHHHHHHHHhc---CCcccC
Q psy7266 67 --KFDTKNESAINQWLEWESVELFPSVLSFFD-------NPKV-----------LPDNLKTKLNVLNEAIS---NSFLIE 123 (1175)
Q Consensus 67 --p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-------~g~~-----------~~~~l~~~L~~Le~~L~---~~fLvG 123 (1175)
|.++.+++.+++|+.+... +...+..++. .... ..+.+.+.|+.||++|. ++||+|
T Consensus 100 L~p~~~~~ra~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lE~~L~~~~~~fl~G 178 (252)
T 3h1n_A 100 LAPPDRAGRLWVNQLQLTIAD-LTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDM 178 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHHH-HHHHHHHTTCSSCTTSCGGGGHHHHHHHHHHHHHTHHHHHHHHHHHHTCSTTSSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHH-HHHHHHHhhcccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecC
Confidence 8899999999999987753 3332211110 0100 01346788999999998 589999
Q ss_pred CCCCccchhHHHHHHHHhhCCCCC--CCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 124 NSTTVADICIWTCVYPLLSDSKVR--PLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 124 ~~lTlADi~l~~~L~~~~~~~~~~--~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+++|+|||++++.+.++....... .....||+|.+|+++|.++|.+++++..
T Consensus 179 d~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv~~rP~~~~~l~~ 232 (252)
T 3h1n_A 179 GRWSYADLSLYHVVEGLLHAFPRRMRTLVHRYPRLMALHARVAELPELRGYLAS 232 (252)
T ss_dssp SSCCHHHHHHHHHHHHHHHHCHHHHHHHGGGCHHHHHHHHHHHTCHHHHHHHTS
T ss_pred CCccHHHHHHHHHHHHHHHhCcccchhhhhcChHHHHHHHHHHcCHHHHHHHhC
Confidence 999999999999999875322110 1256899999999999999999988753
|
| >1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-21 Score=211.64 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=140.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccC-CCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLL-LSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~-P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++... .++ |.|+||+|+ +||.+|+||.+|++||.
T Consensus 3 ~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~VPvL~-d~~~~l~eS~aI~~yL~~~~~l 81 (254)
T 1bg5_A 3 PILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYI-DGDVKLTQSMAIIRYIADKHNM 81 (254)
T ss_dssp CBCCSCSCSTTTHHHHHHHHHTTCCCBCCCCCGGGTHHHHHHTTTTCCSSCCSSBCC-CSSCCCBSHHHHHHHHHHTTSC
T ss_pred cEEEEeCCcchhHHHHHHHHHcCCCceEEeeCCCCHHHHhhcccccCCCCCCCCEEE-ECCEEEecHHHHHHHHHHHhCC
Confidence 679999999999999999999999999998886321 145 999999996 88999999999999996
Q ss_pred -CCChHHHHHHHHHHHHHhhhchhhhhhhhcCC------CCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHH
Q psy7266 67 -KFDTKNESAINQWLEWESVELFPSVLSFFDNP------KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 67 -p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g------~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
|.++.+++.+++|+.+.. .+.+.+...++.+ ....+.+.+.|+.||++|+ ++||+|+++|+|||++++.|.
T Consensus 82 ~p~~~~~ra~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~le~~L~~~~yl~Gd~~T~ADi~l~~~l~ 160 (254)
T 1bg5_A 82 LGGCPKERAEISMLEGAVL-DIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALD 160 (254)
T ss_dssp SCSSHHHHTHHHHHHHHHH-HHHHHHHTTSSSTTCSSSSTTTTTTSTTTSTTTTTTTTTSSSSSSSSCCTHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeecCCCCcHHHHHHHHHHH
Confidence 677888999999998763 4555544433211 1234567888999999999 999999999999999999998
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++.... ......||+|.+|+++|.++|.+++++...
T Consensus 161 ~~~~~~--~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~ 196 (254)
T 1bg5_A 161 VVLYMD--PMCLDAFPKLVCFKKRIEAIPQIDKYLKSS 196 (254)
T ss_dssp SSTTTC--TTTTTSCHHHHHHHHHTSCSHHHHHHHTTT
T ss_pred HHHhhC--hhhhhcChHHHHHHHHHHhChHHHHHHhcC
Confidence 853322 234678999999999999999999987643
|
| >4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=216.14 Aligned_cols=175 Identities=13% Similarity=0.136 Sum_probs=145.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS--------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~--------- 66 (1175)
|+||+++.||++++++++|+++|++|+.+.+++... .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 253 ~~L~~~~~sp~~~rv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~~L 332 (471)
T 4ags_A 253 HVLYSNLFCPFVDRARLASELRKFQMHIVEVPLHPQPEWYKYINPRDTVPALFTPSGEAVHESQLIVQYIDCVATKGSAL 332 (471)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCCSSCCTTHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHHHCCSSCCS
T ss_pred EEEEecCCCchHHHHHHHHHHCCCCcEEEEecCCcCcHHHHHhCCCCCcCeEEeCCCcEeecHHHHHHHHHhccCCCCCC
Confidence 689999999999999999999999999999987642 268999999998789999999999999985
Q ss_pred -CC-ChHHHHHHHHHHHHHhhhchhhhhhhhc-CCCCchHHHHHHHHHHHHHhc-C-----CcccCCCCCccchhHHHHH
Q psy7266 67 -KF-DTKNESAINQWLEWESVELFPSVLSFFD-NPKVLPDNLKTKLNVLNEAIS-N-----SFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 67 -p~-~~~~~a~v~~wl~~~~~~l~p~~~~~~~-~g~~~~~~l~~~L~~Le~~L~-~-----~fLvG~~lTlADi~l~~~L 137 (1175)
|. ++.+++.+++|+.+... +.+.+..++. ......+.+.+.|+.||++|. + +||+|+++|+|||++++.|
T Consensus 333 ~p~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~fl~Gd~~t~ADi~l~~~l 411 (471)
T 4ags_A 333 VPRGDAEKEYEVGFFVENAGY-FVGGLMSWIIRGGEDAKAELQWAAGELEQQLAKHPFGEGPFFGGKRMNAGDVAILPFL 411 (471)
T ss_dssp SCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTCTTCSSSBTTBSSCCHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHhh-hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccCCCCccCCCCCcHHHHHHHHHH
Confidence 55 77899999999999876 4444433332 233446678999999999996 4 4999999999999999999
Q ss_pred HHHhhCC----CCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 138 YPLLSDS----KVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 138 ~~~~~~~----~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.++.... ........||+|.+|+++|.++|.|++++...
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~~~~~~~~~ 454 (471)
T 4ags_A 412 VRAKAFMPEFSGGYDLFAHFPLLNGLAEAGMATPEAKSVFRTL 454 (471)
T ss_dssp HHHHHHTTTTTTTCCGGGTCHHHHHHHHHHHTSHHHHHHCCCH
T ss_pred HHHHHHHHhhcCCccccccChHHHHHHHHHhcCHHHHHhcCCH
Confidence 9876321 11233578999999999999999999987654
|
| >1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1; glutathione-S-tranferase superfamily, chloride ION channel, metal transport; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A 3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=197.98 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=131.4
Q ss_pred CEEEecC--------CCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-
Q psy7266 1 MKCLSNR--------NNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS- 66 (1175)
Q Consensus 1 m~Ly~~~--------~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~- 66 (1175)
|+||+.+ .||++++++++|.++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 8 ~~Ly~~~~~~g~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~g~VPvL~-~~g~~l~eS~aI~~yL~~ 86 (241)
T 1k0m_A 8 VELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGELPFLL-YGTEVHTDTNKIEEFLEA 86 (241)
T ss_dssp EEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTSCCHHHHHHCTTCCSSEEE-ETTEEEECHHHHHHHHHH
T ss_pred eEEEeecCCCCCCCCCCHHHHHHHHHHHHcCCccEEEEcCCcccHHHHHHhCCCCCCCEEE-ECCEEecCHHHHHHHHHH
Confidence 5788766 78999999999999999999999987532 278999999997 88999999999999995
Q ss_pred --C---------CChHH-HHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHh------------------
Q psy7266 67 --K---------FDTKN-ESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAI------------------ 116 (1175)
Q Consensus 67 --p---------~~~~~-~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L------------------ 116 (1175)
+ .++.+ ++.++.|+.|... +...... ........+.+.|+.||++|
T Consensus 87 ~~~~~~~~~L~p~~~~~~~a~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~~le~~L~~~~~~~~~~~~~~~~~~ 162 (241)
T 1k0m_A 87 VLCPPRYPKLAALNPESNTAGLDIFAKFSAY-IKNSNPA---LNDNLEKGLLKALKVLDNYLTSPLPEGVDETSAEDEGV 162 (241)
T ss_dssp HSCTTTSCCCSCSSGGGGTTTTTHHHHHHHH-HHCCCHH---HHHHHHHHHHHHHHHHHHHHHSCCCCCTTCCHHHHHSC
T ss_pred hcCCCCCCcCcCCCHHHHHHHHHHHHHHHHH-HcCCCHH---HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 2 24455 7788888877531 1000000 00122346788999999999
Q ss_pred c-CCcccCCCCCccchhHHHHHHHHhhC---CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 117 S-NSFLIENSTTVADICIWTCVYPLLSD---SKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 117 ~-~~fLvG~~lTlADi~l~~~L~~~~~~---~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
. ++||+|+++|+|||++++.|.++... .........||+|.+|+++|.++|.|++++..-
T Consensus 163 ~~~~~l~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 226 (241)
T 1k0m_A 163 SQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCPDD 226 (241)
T ss_dssp CCCSSSSSSSCCHHHHHHHHHHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHTSHHHHTTSCCH
T ss_pred CCCccccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHhcChhHhhcCCCH
Confidence 7 89999999999999999999886410 111123478999999999999999999876543
|
| >3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=193.04 Aligned_cols=167 Identities=19% Similarity=0.221 Sum_probs=132.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---CC---Ch
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----RLLLSKTVPVLELDDGSQLFSANQSCLYLS---KF---DT 70 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p~---~~ 70 (1175)
|+||+++.||+|++++++|.++|++|+.+.+++.+. .+||.|+||+|+++||.+|+||.+|++||. |. ..
T Consensus 4 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~p~~~vP~l~~~~g~~l~eS~aI~~yL~~~~~~~~lp~ 83 (218)
T 3ir4_A 4 MKLYIYDHCPFCVKARMIFGLKNIPVELNVLQNDDEATPTRMIGQKMVPILQKDDSRYLPESMDIVHYVDNLDGKPLLTG 83 (218)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCCHHHHHHHSSSCSCEEECTTSCEEECHHHHHHHHHHTTSCCSCCC
T ss_pred EEEEcCCCCchHHHHHHHHHHcCCceEEEECCCcchhhhhhcCCCceeeeEEEeCCeEeeCHHHHHHHHHHhCCCcCCCC
Confidence 799999999999999999999999999999998753 378999999997789999999999999996 21 11
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhh-----------------hc------CC---------CCchHHHHHHHHHHHHHhc-
Q psy7266 71 KNESAINQWLEWESVELFPSVLSF-----------------FD------NP---------KVLPDNLKTKLNVLNEAIS- 117 (1175)
Q Consensus 71 ~~~a~v~~wl~~~~~~l~p~~~~~-----------------~~------~g---------~~~~~~l~~~L~~Le~~L~- 117 (1175)
.+++.+++|+.+....+.+.+... +. .| ....+.+...|+.||++|.
T Consensus 84 ~~~a~~~~w~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~L~~le~~L~~ 163 (218)
T 3ir4_A 84 KRNPAIEEWLRKVNGYVNQLLLPRFAKSAFDEFSTPAARQYFIRKKEASSGSFDNHLAHSAGLIKKIGDDLRLLDKLIVQ 163 (218)
T ss_dssp CCCHHHHHHHHHHHTTTHHHHHHHHTTSCCGGGCSHHHHHHHHHHHHHHHCCHHHHHHTHHHHHHHHHHHHHHHHHHCCB
T ss_pred ccHHHHHHHHHHHHHHHHHHhccchhhccccccCCHHHHHHHHHhhhhhccCHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Confidence 257889999999887766554321 11 01 1123467888999999999
Q ss_pred CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 118 NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 118 ~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
++|+.| ++|+|||++++.|.++..... ....|+|.+|++||.++|.+..+
T Consensus 164 ~~~lgg-~~t~ADi~l~~~l~~~~~~~~----~~~~p~l~~w~~r~~~rp~v~~~ 213 (218)
T 3ir4_A 164 PNAVNG-ELSEDDIHLFPLLRNLTLVAG----IHWPTKVADYRDNMAKQTQINLL 213 (218)
T ss_dssp TTBTTS-SCCHHHHHHHHHHHHHTTSTT----CCCCHHHHHHHHHHHHHHTCCCC
T ss_pred ccccCC-CCCHHHHHHHHHHhheeeccc----CcCCHHHHHHHHHHHHhcCCCch
Confidence 888754 999999999999998643311 12239999999999999987643
|
| >4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=215.36 Aligned_cols=176 Identities=13% Similarity=0.119 Sum_probs=139.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCC--CcEEeCHHHHHHHHc------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDD--GSQLFSANQSCLYLS------ 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~d--G~~l~eS~aI~~YL~------ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.+. .+||.|+||+|+.+| |.+|+||.||++||.
T Consensus 27 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~eS~aI~~yL~~~~~~~ 106 (471)
T 4ags_A 27 LKLYVSATCPFCHRVEIVAREKQVSYDRVAVGLREEMPQWYKQINPRETVPTLEVGNADKRFMFESMLIAQYLDNSGAPA 106 (471)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEECCCGGGCCHHHHHHCTTCCSCEEEECSSSCEEEESHHHHHHHHHHTSSST
T ss_pred eEEECCCCCchHHHHHHHHHHcCCCCEEEEeCCCCCccHHHHhhCCCCccCeEEECCcCeEEEecHHHHHHHHHHhcCCC
Confidence 589999999999999999999999999999987541 278999999998777 799999999999985
Q ss_pred ----CCChHHHHHHHHHHHHHhhhchhhhhhhhcC-CCCchHHHHHHHHHHHHHh----c-CCcccCCCCCccchhHHHH
Q psy7266 67 ----KFDTKNESAINQWLEWESVELFPSVLSFFDN-PKVLPDNLKTKLNVLNEAI----S-NSFLIENSTTVADICIWTC 136 (1175)
Q Consensus 67 ----p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~-g~~~~~~l~~~L~~Le~~L----~-~~fLvG~~lTlADi~l~~~ 136 (1175)
|.++.+++.+++|+.+....+.+....+... .....+.+...|..|+..| . ++||+|+++|+|||++++.
T Consensus 107 ~~L~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~l~~~~~l~G~~~t~ADi~l~~~ 186 (471)
T 4ags_A 107 GALMGSSAAQRHQIEFFLAQVGDFIGAAHGLLRDPLSGEKRKAMDDNAAYVDGLLAANQTTGPYYCDGEFTMADVALVPF 186 (471)
T ss_dssp TGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHHHHCSSCSBTBBTBCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhccCCCCeeCCCCCCHhHHHHHHH
Confidence 5567899999999999887766544333211 1223445566666665555 4 7999999999999999999
Q ss_pred HHHHhhC---CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 137 VYPLLSD---SKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 137 L~~~~~~---~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
|.++... .........||+|.+|+++|.++|.+++++...
T Consensus 187 l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 229 (471)
T 4ags_A 187 LVRLKPALMYYAGYDVFCKAPRMKALWAAAAQRASVRETSPTA 229 (471)
T ss_dssp HHHHHHHHHHHHSCCTTTTCHHHHHHHHHHTTSHHHHTTCCCH
T ss_pred HHHHHHHhhhhcCCcccCCChHHHHHHHHHhcChHHHHhccCH
Confidence 9987421 111234578999999999999999999886544
|
| >2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP: a.45.1.1 c.47.1.5 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-19 Score=195.65 Aligned_cols=175 Identities=10% Similarity=0.011 Sum_probs=131.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-----c---ccCCCCcccEEEe-CCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-----A---RLLLSKTVPVLEL-DDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-----~---~~~P~g~vP~L~~-~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.++++++||++|.++|++|+.+.++... . .+||+|+||+|+. +||.+|+||.||++||+
T Consensus 20 ~~Ly~~~~~~~~~~vrl~L~e~gi~ye~~~~~~~~~~~~~~~~~~~nP~gkVPvL~~~d~g~~l~ES~AI~~YLa~~~~L 99 (248)
T 2fno_A 20 FDLYYWPVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAIAIYLGERLDI 99 (248)
T ss_dssp EEEECCSSSSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHHHHHHHHHHTTC
T ss_pred eEEEecCCCCchHHHHHHHHHcCCCcEeeccchHHHHHhccccccCCCCCCCCEEEeccCCEEEecHHHHHHHHHHHcCC
Confidence 58999998889999999999999999988765321 1 2799999999963 78899999999999985
Q ss_pred -CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-------CCcccCCC-CCccch
Q psy7266 67 -KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-------NSFLIENS-TTVADI 131 (1175)
Q Consensus 67 -p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-------~~fLvG~~-lTlADi 131 (1175)
|.++.+++.+++|+.+....+.......+.... ...+.+.+.|+.||++|. ++||+|++ +|+|||
T Consensus 100 ~p~~~~~ra~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~~~~~~l~Gd~~~T~ADi 179 (248)
T 2fno_A 100 LPATVEGRTLSAKIVNDANDVLDELTLNGGREMWTPEKWQEFVPRLQKWIRIFADTGARNGLSAASGFMLGTEKIGVADI 179 (248)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHTGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCTTSCSSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCCCeeecCCCccHHHH
Confidence 788899999999998665432221100000000 133457889999999997 36999999 999999
Q ss_pred hHHHHHHHHhh-CCCCC--CCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 132 CIWTCVYPLLS-DSKVR--PLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 132 ~l~~~L~~~~~-~~~~~--~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++ +.+..+.. ..... .....||+|.+|+++|.++|.+++++.+-
T Consensus 180 ~l-~~l~~~~~~~~~~~~~~~~~~~P~l~~w~~rv~~rP~~~~~~~~~ 226 (248)
T 2fno_A 180 VT-AILWTTVADRFPAIKGIIEDTSPIIWGLSRRVVATAPLAALNSKS 226 (248)
T ss_dssp HH-HHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HH-HHHHHHHHhhccchhhhhhhcCcHHHHHHHHHHcChhHHHHhhhc
Confidence 99 66554321 11100 11347999999999999999999998443
|
| >2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-19 Score=193.20 Aligned_cols=166 Identities=12% Similarity=0.109 Sum_probs=124.0
Q ss_pred CEEE--------ecCCCchHHHHHHHHHhcCCCcEEEEecCcc-----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc-
Q psy7266 1 MKCL--------SNRNNVQTLKLLITAEFSTTKLDVELVDVAD-----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS- 66 (1175)
Q Consensus 1 m~Ly--------~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~- 66 (1175)
|+|| +++.||++++++++|.++|++|+.+.+++.. ..+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 14 i~ly~~~~~~~~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~g~vP~L~-~~g~~l~ES~aI~~YL~~ 92 (247)
T 2r4v_A 14 IELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPPFLV-YNKELKTDFIKIEEFLEQ 92 (247)
T ss_dssp EEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECCC----------CCSSSCEEE-ETTEEECCHHHHHHHHHH
T ss_pred EEEEEecCcccccCCCChhHHHHHHHHHHcCCCcEEEEcCcccchHHHHHhCCCCCCCEEE-ECCEeccCHHHHHHHHHH
Confidence 5799 8999999999999999999999999998753 1378999999997 78999999999999996
Q ss_pred --C---------CChHHHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHh--------------
Q psy7266 67 --K---------FDTKNESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAI-------------- 116 (1175)
Q Consensus 67 --p---------~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L-------------- 116 (1175)
+ .++.+++.+..|.. .+..++.... ...+.+.+.|+.||++|
T Consensus 93 ~~~~~~~~~L~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~e~~~~~~~ 164 (247)
T 2r4v_A 93 TLAPPRYPHLSPKYKESFDVGCNLFA--------KFSAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAE 164 (247)
T ss_dssp HSCTTTSCCCCCSSTHHHHTTTTHHH--------HHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHSCCTTCCCTTTSS
T ss_pred hcCCCCCCcCCCCCHHHHHHHHHHHH--------HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhcc
Confidence 2 23344444444432 2222221111 12346788999999999
Q ss_pred ----c-CCcccCCCCCccchhHHHHHHHHhhC---CCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 117 ----S-NSFLIENSTTVADICIWTCVYPLLSD---SKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 117 ----~-~~fLvG~~lTlADi~l~~~L~~~~~~---~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
. ++||+|+++|+|||++++.|.++... .........||+|.+|+++|.++|.|++++..
T Consensus 165 ~~~~~~~~~l~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~ri~~rp~~~~~~~~ 231 (247)
T 2r4v_A 165 EPPVSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPE 231 (247)
T ss_dssp CCSSCCCSSSSSSSCCHHHHHHHHHHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHTCHHHHTTSCC
T ss_pred ccccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHhcCcchhhhcCc
Confidence 7 89999999999999999999986310 01112346899999999999999999987653
|
| >2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=192.22 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=126.7
Q ss_pred CEEE--------ecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-
Q psy7266 1 MKCL--------SNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS- 66 (1175)
Q Consensus 1 m~Ly--------~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~- 66 (1175)
|+|| +++.||++++++++|.++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.+|++||.
T Consensus 19 i~ly~~~~~~~~~~~~~p~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~gkVPvL~-~~g~~l~ES~aI~~YL~~ 97 (267)
T 2ahe_A 19 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFIT-FNSEVKTDVNKIEEFLEE 97 (267)
T ss_dssp EEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTSCCHHHHHHSTTCCSCEEE-ETTEEECCHHHHHHHHHH
T ss_pred EEEEEecCCCccCCCCCchHHHHHHHHHHcCCCCEEEEeCcccChHHHHHhCCCCCCCEEE-ECCEEecCHHHHHHHHHH
Confidence 5899 88899999999999999999999999987542 279999999997 68899999999999995
Q ss_pred --C---------CChHHHHHHHHHHHHHhhhchhhhhhhhcC-CC----CchHHHHHHHHHHHHHh--------------
Q psy7266 67 --K---------FDTKNESAINQWLEWESVELFPSVLSFFDN-PK----VLPDNLKTKLNVLNEAI-------------- 116 (1175)
Q Consensus 67 --p---------~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~-g~----~~~~~l~~~L~~Le~~L-------------- 116 (1175)
+ .++..++.+..|+.... .++.. .. ...+.+.+.|..||++|
T Consensus 98 ~~~~~~~~~L~p~d~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~e~~~~~~~ 169 (267)
T 2ahe_A 98 VLCPPKYLKLSPKHPESNTAGMDIFAKFS--------AYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSME 169 (267)
T ss_dssp HSCTTTSCCCSCSSGGGGTTTTTHHHHHH--------HHHHCCCGGGHHHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhcccchhcchhhc
Confidence 2 23444544444443221 11111 11 12345788899999999
Q ss_pred ----c-CCcccCCCCCccchhHHHHHHHHhhC---CCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 117 ----S-NSFLIENSTTVADICIWTCVYPLLSD---SKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 117 ----~-~~fLvG~~lTlADi~l~~~L~~~~~~---~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
. ++||+|+++|+|||++++.|.++... .........||+|.+|+++|.++|+|++++..
T Consensus 170 ~~~~~~~~fl~Gd~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~rp~~~~~~~~ 236 (267)
T 2ahe_A 170 DIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPS 236 (267)
T ss_dssp ----CCCSBTTBSSCCHHHHHHHHHHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHTCHHHHTTSCC
T ss_pred ccccCCCccccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHhcCHHHHHhcCC
Confidence 7 89999999999999999999886411 00112347899999999999999999987643
|
| >3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-18 Score=194.54 Aligned_cols=166 Identities=16% Similarity=0.222 Sum_probs=127.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccC-CCCcccEEEeCCCcEEeCHHHHHHHHc--------
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLL-LSKTVPVLELDDGSQLFSANQSCLYLS-------- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~-P~g~vP~L~~~dG~~l~eS~aI~~YL~-------- 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++... .+| |.|+||+|+ +||.+|+||.+|++||.
T Consensus 4 ~~Ly~~~~sp~~~kvr~~L~~~gi~ye~~~v~~~~~~~~~~~~n~P~g~vPvL~-~~g~~l~eS~aI~~yL~~~~~~~~L 82 (310)
T 3ic8_A 4 LILHHYPTSLFAEKARLMLGFKGVNWRSVTIPSIMPKPDLTALTGGYRKTPVLQ-IGADIYCDTALMARRLEQEKASPAF 82 (310)
T ss_dssp EEEEECTTCGGGHHHHHHHHHHTCEEEEEECCSSSCCHHHHHHHSSCCCSCEEE-ETTEEECSHHHHHHHHHHHCCSSCS
T ss_pred EEEEecCCCcHHHHHHHHHHhcCCCcEEEEcCCCCCcHHHHHhcCCCCceeEEE-ECCEEEcCHHHHHHHHHHhCCCCCC
Confidence 589999999999999999999999999999987432 267 999999997 78999999999999986
Q ss_pred -CCCh-HHHHHHHHH----HHHHhhhchh--hhh-------------hhh------cCCC--------CchHHHHHHHHH
Q psy7266 67 -KFDT-KNESAINQW----LEWESVELFP--SVL-------------SFF------DNPK--------VLPDNLKTKLNV 111 (1175)
Q Consensus 67 -p~~~-~~~a~v~~w----l~~~~~~l~p--~~~-------------~~~------~~g~--------~~~~~l~~~L~~ 111 (1175)
|.++ .+++.+++| +.|....+.+ .+. .+. ..+. .....+.+.|+.
T Consensus 83 ~p~~~~~~~~~~~~w~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~L~~ 162 (310)
T 3ic8_A 83 YPQGQEFAVAGLAAWADSVLFLHAVSLVFQPESMAVRFAKVPPDAAKAFIADRSMLFNGGTASRPPVEQVKHQWPTFMSR 162 (310)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHHHHHHHSSGGGC-------------------------------CHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhhhhHHHHHHHhcchhhhhhhhccCChhhhHHHHHHHHHHhCCCCccccCHHHHHHHHHHHHHH
Confidence 4453 677888999 6666554432 110 000 0000 124567899999
Q ss_pred HHHHhc--CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHH
Q psy7266 112 LNEAIS--NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQ 168 (1175)
Q Consensus 112 Le~~L~--~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~ 168 (1175)
||++|. ++||+| ++|+|||++++.|.++............||||.+|++||.+++.
T Consensus 163 Le~~L~~~~~fl~G-~~T~ADi~l~~~l~~~~~~~~~~~~~~~~P~l~~w~~r~~~~~~ 220 (310)
T 3ic8_A 163 LESQLSHGGDFLFG-APSIADFSVAHTLWFLKQTPVTAPFVDDYPSVSVWLDRVLGFGH 220 (310)
T ss_dssp HHHHHTTCCSBTTB-SCCHHHHHHHHHHHHHHTCTTTTHHHHTSHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCcccC-CCcHHHHHHHHHHHHHhcCccchhhhhhChhHHHHHHHHHHhcC
Confidence 999997 899999 99999999999998754322222335789999999999998753
|
| >3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC, chloride channel, ION transport, ionic channel, nucleus, transport, gated channel; 1.95A {Homo sapiens} PDB: 3kjy_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-18 Score=185.23 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=118.8
Q ss_pred cCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc---CC--ChHHHHH
Q psy7266 6 NRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS---KF--DTKNESA 75 (1175)
Q Consensus 6 ~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---p~--~~~~~a~ 75 (1175)
.+.||++++++++|.++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.||++||. +. .+.....
T Consensus 39 ~~~sP~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~nP~g~VPvL~-~dg~~l~ES~aI~~YL~~~~~~~~~p~l~~~ 117 (250)
T 3fy7_A 39 VGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQLPILL-YDSDAKTDTLQIEDFLEETLGPPDFPSLAPR 117 (250)
T ss_dssp BCSCHHHHHHHHHHHHHTCCCEEEEEC--------------CCSCEEE-ETTEEECCHHHHHHHHHHHSCTTTSCCCCCS
T ss_pred CCCChHHHHHHHHHHHcCCccEEEECCCccChHHHHhhCCCCCCCEEE-ECCEEecCHHHHHHHHHHHcCCCCCCccccc
Confidence 3679999999999999999999999987642 278999999997 68999999999999997 31 1222233
Q ss_pred HHHHHHHHhhhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHhc-----------------CCcccCCCCCccchhH
Q psy7266 76 INQWLEWESVELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAIS-----------------NSFLIENSTTVADICI 133 (1175)
Q Consensus 76 v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L~-----------------~~fLvG~~lTlADi~l 133 (1175)
..+|... ...+.+.+..++.... ...+.+.+.|..||++|. ++||+|+++|+|||++
T Consensus 118 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~l~~~~~~~~~~~~~~~~fl~G~~~T~ADi~l 196 (250)
T 3fy7_A 118 YRESNTA-GNDVFHKFSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSL 196 (250)
T ss_dssp SHHHHHT-TTTHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHSCCHHHHHHCTTCCSCCCSSSSSSSCCHHHHHH
T ss_pred cHHHHHH-HHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCccccCCCCchhhHHH
Confidence 4455543 2344444444332211 123567888999999995 4899999999999999
Q ss_pred HHHHHHHhh---CCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 134 WTCVYPLLS---DSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 134 ~~~L~~~~~---~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
++.|.++.. ..........||+|.+|+++|.++|.|++++..
T Consensus 197 ~~~l~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~p~~~~~~~~ 241 (250)
T 3fy7_A 197 LPKLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPH 241 (250)
T ss_dssp HHHHHHHHHHHHHHHSCCCCTTCHHHHHHHHHHHTSHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHhcChhhhhhCCC
Confidence 999997542 001112347899999999999999999987543
|
| >3m1g_A Putative glutathione S-transferase; ECM4-like subfamily, GST_C family, structural genomics, PSI- protein structure initiative; 2.10A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=191.17 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=128.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------------------------------ccCCC--C--cccE
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------------------------------RLLLS--K--TVPV 46 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------------------------------~~~P~--g--~vP~ 46 (1175)
|+||++..||+++|++|+++++||+ +.+.|++... ..||. | +||+
T Consensus 62 ~~LY~~~~cP~a~Rv~I~L~lkGL~-e~i~vdl~~~~~~~~~W~~~~~P~g~~P~~~~~~l~~~y~~~nP~y~Gr~tVPv 140 (362)
T 3m1g_A 62 YRLVAARACPWAHRTVITRRLLGLE-NVISLGLTGPTHDVRSWTFDLDPNHLDPVLQIPRLQDAYFNRFPDYPRGITVPA 140 (362)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCT-TTSEEEECCCCCC------------------------------------CCSSE
T ss_pred EEEEecCCCccHHHHHHHHHHhCCC-ceEEEeccCCccCCCCcEecCCCCCCCccchhhhHHHHHHHhCCCCCCCcceeE
Confidence 5899999999999999999999999 7666665421 12442 3 6999
Q ss_pred EEeC--CCcEEeCHHHHHHHHcCC----------C--h-HHHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHH
Q psy7266 47 LELD--DGSQLFSANQSCLYLSKF----------D--T-KNESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLK 106 (1175)
Q Consensus 47 L~~~--dG~~l~eS~aI~~YL~p~----------~--~-~~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~ 106 (1175)
|+.. ++.+|+||.||++||... + + ..++.+++|+.|....+...+....+... ...+.+.
T Consensus 141 L~D~~~g~~Vl~ES~AIl~YL~e~~~~~~~~~~~~L~P~d~ra~i~~~~~~i~~~i~~~v~~~~fa~~qea~e~a~~~l~ 220 (362)
T 3m1g_A 141 LVEESSKKVVTNDYPSITIDFNLEWKQFHREGAPNLYPAELREEMAPVMKRIFTEVNNGVYRTGFAGSQEAHNEAYKRLW 220 (362)
T ss_dssp EEETTTCCEEECCHHHHHHHHHHTSGGGSCTTCCCSSCGGGHHHHHHHHHHHHHHTTTHHHHHHTCSSHHHHHHHHHHHH
T ss_pred EEEcCCCCEEeecHHHHHHHHHHhhccccCCCccccCChhHHHHHHHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHHHH
Confidence 9752 567889999999999621 1 1 24778999999887776654443322221 2235678
Q ss_pred HHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhC-----CCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 107 TKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSD-----SKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 107 ~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~-----~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
+.|+.||++|. ++||+|+++|+|||+++++|.++... .........||+|.+|+++|.++|.|++++.
T Consensus 221 ~~L~~LE~~L~~~~yl~Gd~lTlADI~L~~~l~r~~~v~~~~f~~~~~~l~~yP~L~aW~~rl~~rPa~k~t~~ 294 (362)
T 3m1g_A 221 VALDWLEDRLSTRRYLMGDHITEADIRLYPTLVRFDAVYHGHFKCGRNKITEMPNLWGYLRDLFQTPGFGDTTD 294 (362)
T ss_dssp HHHHHHHHHTTSSSBTTBSSCCHHHHHHHHHHHTCCCCCTTTTCCCSSCGGGSHHHHHHHHHHHTSTTTGGGCC
T ss_pred HHHHHHHHHhccCCccCCCCCCeeeeEEEEeehhhhhhhhccccccccchhhChHHHHHHHHHHcCHHHHHhcC
Confidence 89999999999 99999999999999999999874311 1111234789999999999999999998753
|
| >2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold, metal transport; 1.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=180.66 Aligned_cols=166 Identities=13% Similarity=0.155 Sum_probs=120.3
Q ss_pred CEEEecCC---------CchHHHHHHHH----HhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHH
Q psy7266 1 MKCLSNRN---------NVQTLKLLITA----EFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSC 62 (1175)
Q Consensus 1 m~Ly~~~~---------sp~~~~v~ial----~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~ 62 (1175)
|+||+... ||++++++++| +++|++|+.+.+++.+. .+||.|+||+|+ +||.+|+||.||+
T Consensus 23 i~Ly~~~~s~~~~~~~~cP~~~rv~~~L~ll~~~~gi~ye~~~v~~~~~~~~~~~~nP~gkVPvL~-d~g~~l~ES~aI~ 101 (260)
T 2yv7_A 23 IELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILI-DNGLAILENEKIE 101 (260)
T ss_dssp EEEEEEBCTTTSSSBCCCHHHHHHHHHHHHHHHTTSSEEEEEEECTTSCC-----CCTTCCSCEEE-ETTEEECSHHHHH
T ss_pred EEEEEeccCCCCCccCcChHHHHHHHHHHhHHHhcCCCceEEEeccccCCHHHHhhCCCCCCCEEE-ECCEEEeCHHHHH
Confidence 47886543 49999999999 89999999999987542 378999999996 6899999999999
Q ss_pred HHHc---CCCh------HHHHHHHHHHHHHhhhchhhhhhhhcC-CCCchHHHHHHHHHHHHHhc---CCcccCCCCCcc
Q psy7266 63 LYLS---KFDT------KNESAINQWLEWESVELFPSVLSFFDN-PKVLPDNLKTKLNVLNEAIS---NSFLIENSTTVA 129 (1175)
Q Consensus 63 ~YL~---p~~~------~~~a~v~~wl~~~~~~l~p~~~~~~~~-g~~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlA 129 (1175)
+||. |.++ .+.+.+ ...+.+.+..++.. .....+.+.+.|+.||++|. ++||+|+++|+|
T Consensus 102 ~YL~~~~~~~~~L~p~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~~~fl~Gd~~T~A 174 (260)
T 2yv7_A 102 RHIMKNIPGGYNLFVQDKEVATL-------IENLYVKLKLMLVKKDEAKNNALLSHLRKINDHLSARNTRFLTGDTMCCF 174 (260)
T ss_dssp HHHHHHSTTHHHHSCCCHHHHHH-------HTTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTCSSSSSSSCCHH
T ss_pred HHHHHhCCCCcccCCCCHHHHHH-------HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCcccCCCCcHH
Confidence 9996 3211 111111 11222222222211 11224678899999999998 589999999999
Q ss_pred chhHHHHHHHHhhC---CCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 130 DICIWTCVYPLLSD---SKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 130 Di~l~~~L~~~~~~---~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
||++++.|.++... .........||+|.+|+++|.++|+|+++..
T Consensus 175 Di~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~ri~~rP~~~~~~~ 222 (260)
T 2yv7_A 175 DCELMPRLQHIRVAGKYFVDFEIPTHLTALWRYMYHMYQLDAFTQSCP 222 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHTCHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcCHHHHHhCC
Confidence 99999988764211 0111223679999999999999999998754
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=196.28 Aligned_cols=103 Identities=14% Similarity=0.251 Sum_probs=84.1
Q ss_pred CCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHH
Q psy7266 273 PVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDK 352 (1175)
Q Consensus 273 ~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~ 352 (1175)
+.+|.. ..+ ++|..+|.|||+|||||++++++ .+.++| +|++.|+.-+||. ++.....+
T Consensus 88 ~~L~~~-~g~-v~tRFaPsPtG~LHIGhaRtal~-n~l~Ar-----~~~G~~iLRieDt-------------D~~R~~~e 146 (553)
T 3aii_A 88 RELAGV-KGE-VVLRFAPNPSGPLHIGHARAAIL-NHEYAR-----KYDGRLILRIEDT-------------DPRRVDPE 146 (553)
T ss_dssp CCCSSC-CSC-CEEEECCCSSSSCBHHHHHHHHH-HHHHHH-----HTTCEEEEEECCC-------------CGGGCCTT
T ss_pred CCCCCC-CCc-eEEEeCCCCCCCccHHHHHHHHH-HHHHHH-----HcCCEEEEEECcC-------------CcccccHH
Confidence 445544 223 78999999999999999998776 555555 6788888888875 45555678
Q ss_pred HHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEe
Q psy7266 353 YFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSS 398 (1175)
Q Consensus 353 ~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 398 (1175)
|.+.|.++++|||+.+|..++.| +|.+..+++..+|+++|++|.
T Consensus 147 ~~~~I~edL~wLGl~wd~~~~qS--dr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 147 AYDMIPADLEWLGVEWDETVIQS--DRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HHHHHHHHHHHHTCCCSEEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCCCCcccc--cCHHHHHHHHHHHHHcCCcee
Confidence 99999999999999999766666 499999999999999999996
|
| >2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-18 Score=184.03 Aligned_cols=155 Identities=13% Similarity=0.143 Sum_probs=122.0
Q ss_pred CEEEecCCCch-HHHHHHHHHhcCC-CcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHcCCC-----hHHH
Q psy7266 1 MKCLSNRNNVQ-TLKLLITAEFSTT-KLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLSKFD-----TKNE 73 (1175)
Q Consensus 1 m~Ly~~~~sp~-~~~v~ial~~~gi-~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p~~-----~~~~ 73 (1175)
|+||+.+.||. ++.+++++++.|. +++.+.+++...+ . | .||.+|+||.||++||+... +.++
T Consensus 21 ~~Ly~~~~s~~~~~~vl~~a~~~g~~~~~~v~v~~~~~~------~--l--~dg~~l~ES~AI~~YLa~~~~~L~p~~~r 90 (209)
T 2hra_A 21 STLTINGKAPIVAYAELIAARIVNALAPNSIAIKLVDDK------K--A--PAAKLDDATEDVFNKITSKFAAIFDNGDK 90 (209)
T ss_dssp EEEEEETTCSSCCHHHHHHHHHHHHHSTTSEEEEEECCT------T--S--CSEEETTBCSSHHHHHHHHTTTTSCCSCH
T ss_pred EEEEEcCCCCchhhHHHHHHHHhccCCCCceEEEEeeCc------c--c--CCCCEeecHHHHHHHHHHhCchhcCHHHH
Confidence 47999999996 7999999999995 4433334333211 1 4 37789999999999997221 4679
Q ss_pred HHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc-CCcccC-CCCCccchhHHHHHHHHhhCCCCCCCcc
Q psy7266 74 SAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLIE-NSTTVADICIWTCVYPLLSDSKVRPLLS 151 (1175)
Q Consensus 74 a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~-~~fLvG-~~lTlADi~l~~~L~~~~~~~~~~~~~~ 151 (1175)
+++++|+.|..+.+.+ ...+.+.+.|+.||++|. ++||+| +++|+|||++|+.|.+.. .........
T Consensus 91 a~v~~wl~~~~~~l~~----------~~~~~l~~~l~~Le~~L~~~~yl~G~d~lTlADi~l~~~l~~~~-~~~~~~~~~ 159 (209)
T 2hra_A 91 EQVAKWVNLAQKELVI----------KNFAKLSQSLETLDSQLNLRTFILGGLKYSAADVACWGALRSNG-MCGSIIKNK 159 (209)
T ss_dssp HHHHHHHHHHHHTTTS----------CCHHHHHHHHHHHHHHTSSCSSTTCCSSCCHHHHHHHHHHHHCT-THHHHHHHT
T ss_pred HHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHhcCCCeEecCCcCCHHHHHHHHHHHHHH-Hhccccccc
Confidence 9999999999876532 345778999999999999 999999 999999999999998742 111012356
Q ss_pred cchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 152 SYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 152 ~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.||||.+|+++|.++|.|++++...
T Consensus 160 ~~P~l~~w~~ri~~~P~~~~~~~~~ 184 (209)
T 2hra_A 160 VDVNVSRWYTLLEMDPIFGEAHDFL 184 (209)
T ss_dssp TCHHHHHHHHHHHTSHHHHTHHHHH
T ss_pred cCchHHHHHHHHHcCHHHHHHHHHH
Confidence 8999999999999999999998877
|
| >1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-17 Score=185.29 Aligned_cols=166 Identities=14% Similarity=0.163 Sum_probs=126.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc---cccCCCCcccEEEeCC-C--cEEeCHHHHHHHHc----C---
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD---ARLLLSKTVPVLELDD-G--SQLFSANQSCLYLS----K--- 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~---~~~~P~g~vP~L~~~d-G--~~l~eS~aI~~YL~----p--- 67 (1175)
|+||+++.||+|++++++|.++|++|+.+.++... -.+||.++||+|+.++ | .+|+||.+|++||. .
T Consensus 15 ~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~p~~~vP~l~~~~~g~~~~l~eS~aI~~yL~~~~~~~~~ 94 (290)
T 1z9h_A 15 LTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQP 94 (290)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTCGGGTTCSCCSSCEEEEEETTEEEEECSHHHHHHHHHHHHHHCCC
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEECChhhHHHHHHcCCCCCCEEEECCCCCeEEecCHHHHHHHHHHHhccccc
Confidence 57999999999999999999999999999998532 2478999999998654 3 79999999999996 2
Q ss_pred ---------C----------------------Ch----------HHHHHHHHHHHHHhhhchhhhhhhhc----------
Q psy7266 68 ---------F----------------------DT----------KNESAINQWLEWESVELFPSVLSFFD---------- 96 (1175)
Q Consensus 68 ---------~----------------------~~----------~~~a~v~~wl~~~~~~l~p~~~~~~~---------- 96 (1175)
. ++ .+++.+++|+.|....+.+.+...+.
T Consensus 95 l~~~~~~~p~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ra~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~ 174 (290)
T 1z9h_A 95 LEEIITYYPAMKAVNDQGKEVTEFGNKYWLMLNEKEAQQVYSGKEARTEEMKWRQWADDWLVHLISPNVYRTPTEALASF 174 (290)
T ss_dssp HHHHGGGSCEEEEECTTSCEEEEETTTTCCCCCHHHHHHHCSSHHHHHHHHHHHHHHHHTTGGGHHHHHSSSHHHHHHHH
T ss_pred cccccccCCCcccccchhhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHhhhhHhhhhHHhhcchHHHHHHH
Confidence 1 11 33788999999998876643322110
Q ss_pred --------CCC--C------------------------chHHHHHHHHHHHHHh----c-CCcccCCCCCccchhHHHHH
Q psy7266 97 --------NPK--V------------------------LPDNLKTKLNVLNEAI----S-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 97 --------~g~--~------------------------~~~~l~~~L~~Le~~L----~-~~fLvG~~lTlADi~l~~~L 137 (1175)
.+. . ..+.+.+.|+.||++| . ++||+|+++|+|||++++.|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~l~~~~yl~Gd~~T~ADi~~~~~l 254 (290)
T 1z9h_A 175 DYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQDNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVL 254 (290)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHCSSCSBTTBTSCCHHHHHHHHHH
T ss_pred hhhhcccccchHHHHHHHHhhHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccCCCCccCCCCCCHHHHHHHHHH
Confidence 010 0 0122378899999999 8 99999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLP 167 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P 167 (1175)
.++.... .......||+|.+|++||.+++
T Consensus 255 ~~~~~~~-~~~~~~~~P~l~~w~~r~~~r~ 283 (290)
T 1z9h_A 255 RVMEGLD-AFDDLMQHTHIQPWYLRVERAI 283 (290)
T ss_dssp HTTTTSH-HHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHccc-chhhhhhChHHHHHHHHHHHhh
Confidence 8753211 0023468999999999998754
|
| >3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A {Phanerochaete chrysosporium} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-17 Score=186.15 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=129.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCC--cEEEEecCcc-------------------------------cccCCCC----c
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTK--LDVELVDVAD-------------------------------ARLLLSK----T 43 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~--~e~~~v~~~~-------------------------------~~~~P~g----~ 43 (1175)
|+||.+..||+++|++|++.++|++ +++..++... ..+||.+ +
T Consensus 78 y~Ly~s~~CP~a~Rv~i~l~lKGL~~~I~v~~v~~~~~~~gW~f~~~~~~~g~~~d~~~~~e~~~~~y~~~nP~g~gr~k 157 (352)
T 3ppu_A 78 YHLYVSYACPWATRTLIVRKLKGLEDFIGVTVVSPRMGSNGWPFANVDPFPAADSDPLNNAQHVKDLYLKVKPDYDGRFT 157 (352)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCTTTSEEEECCSCCBTTBSBCTTTSCCTTCCCCTTTCCSBHHHHHHHHCTTCCSCCC
T ss_pred EEEEEeCCCchHHHHHHHHHHcCCCceeEEEEecCCCCCCCceeccccccCCCCcCcccccccchHHHHHhCCCCCCCee
Confidence 6899999999999999999999997 4555554320 0168999 9
Q ss_pred ccEEEeC--CCcEEeCHHHHHHHHcCCC--------------h-HHHHHHHHHHHHHhhhchhhhhhhhcCCC-----Cc
Q psy7266 44 VPVLELD--DGSQLFSANQSCLYLSKFD--------------T-KNESAINQWLEWESVELFPSVLSFFDNPK-----VL 101 (1175)
Q Consensus 44 vP~L~~~--dG~~l~eS~aI~~YL~p~~--------------~-~~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~ 101 (1175)
||+|+.. ++.+++||.+|++||.... + ..++.+++|+.|....+...+....+... ..
T Consensus 158 VPvL~d~~~g~~vl~ES~aI~~YL~~~f~~l~~~~~~~~~L~P~d~~~~id~~~~~i~~~~~~~vy~~~f~~~~~~~e~a 237 (352)
T 3ppu_A 158 VPVLWDKHTGTIVNNESSEIIRMFNTAFNHLLPEDKAKLDLYPESLRAKIDEVNDWVYDTVNNGVYKSGFASTQKAYEAA 237 (352)
T ss_dssp SCEEEETTTTEEEECCHHHHHHHHHHTTGGGSCHHHHHCCSSCGGGHHHHHHHHHHHHHHTTTHHHHHHHCCSHHHHHHH
T ss_pred eeEEEEeCCCCEEEecHHHHHHHHHHhcccccccccCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHhhccCCHHHHHHH
Confidence 9999852 5579999999999995110 1 12566778888876665544322221111 23
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCC-----CCC-CCcccchhHHHHHHHHh-cCHHHHHHH
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDS-----KVR-PLLSSYTNITPWYDRIS-KLPQVQKAL 173 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~-----~~~-~~~~~~p~L~~W~~rl~-~~P~~~~~l 173 (1175)
...+.+.|+.||++|. ++||+|+++|+|||+++++|.++.... ... .....||+|.+|+++|. ++|.|++++
T Consensus 238 ~~~l~~~L~~LE~~L~~~~yL~Gd~lTlADi~l~~~L~r~~~v~~~~fk~~~~~~~~~~P~L~~w~~rl~~~rPa~~~t~ 317 (352)
T 3ppu_A 238 VIPLFESLDRLEKMLEGQDYLIGGQLTEADIRLFVTIVRFDPVYVTHFKCNLRTIRDGYPNLHRWMRKLYWGNPAFKDTC 317 (352)
T ss_dssp HHHHHHHHHHHHHHTTTCSSSSTTSCCHHHHHHHHHHTTTTTTHHHHSCCCSSCHHHHCHHHHHHHHHHHHHCHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCcCccCCCCCHHHHHHHHHHHHHHHHhhhhhccccccchhhCHHHHHHHHHHHHhCHHHHHHh
Confidence 4567889999999999 999999999999999999998753211 111 12357999999999999 999999876
Q ss_pred H
Q psy7266 174 K 174 (1175)
Q Consensus 174 ~ 174 (1175)
.
T Consensus 318 ~ 318 (352)
T 3ppu_A 318 N 318 (352)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=220.37 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=142.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc-----
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS----- 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~----- 66 (1175)
|+||+++.+|+++++|++|+++|++|+.+.+++.+. .+||.|+||+|+ +||.+|+||.||++||+
T Consensus 2 mkLyY~~~s~~a~kVrl~L~e~Gl~ye~~~vd~~~~e~~~~~e~l~iNP~GkVPvLv-Ddg~vL~ES~AIl~YLa~k~~L 80 (2695)
T 4akg_A 2 PILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYI-DGDVKLTQSMAIIRYIADKHNM 80 (2695)
T ss_dssp CEEEEESSSGGGHHHHHHHHHTTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEE-SSSCEEESHHHHHHHHHHTTSC
T ss_pred cEEEEcCCChhHHHHHHHHHHcCCCcEEEEeCCCcccccCCHhHHhhCCCCCCCEEE-ECCEEEECHHHHHHHHHHhCCC
Confidence 789999999999999999999999999999997531 168999999996 88999999999999996
Q ss_pred -CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHH
Q psy7266 67 -KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 67 -p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
|.++.+++.+++|........ ..+....+... ...+.+.+.|+.||++|. ++||+|+++|+|||++++.+.
T Consensus 81 ~P~d~~erA~v~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~LE~~L~~~~yLvGd~~TlADI~l~~~L~ 159 (2695)
T 4akg_A 81 LGGCPKERAEISMLEGAVLDIR-YGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALD 159 (2695)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHH-HHHHHHHSSSCGGGHHHHHHHHHHHHHHHHHHHTTTCSBTTBSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCHHHHHHHHHHH
Confidence 778889999999987665433 33333322111 123568899999999999 999999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++..... .....||+|.+|+++|.++|.++++++..
T Consensus 160 ~l~~~~~--~~l~~~P~L~aw~~rv~arPa~k~~l~~~ 195 (2695)
T 4akg_A 160 VVLYMDP--MCLDAFPKLVCFKKRIEAIPQIDKYLKSS 195 (2695)
T ss_dssp HHHHHCT--TSSTTCHHHHHHHHHHHHSHHHHHHHTST
T ss_pred HHHHhCc--cccccChHHHHHHHHHHCCHHHHHHHhhc
Confidence 8754322 34678999999999999999999988643
|
| >2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC, GST fold, metal transport; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-16 Score=180.48 Aligned_cols=170 Identities=13% Similarity=0.123 Sum_probs=119.5
Q ss_pred CEEEecC---------CCchHHHHHHHH----HhcCCCcEEEEecCccc---ccCCCCcccEEEeC-CCcEEeCHHHHHH
Q psy7266 1 MKCLSNR---------NNVQTLKLLITA----EFSTTKLDVELVDVADA---RLLLSKTVPVLELD-DGSQLFSANQSCL 63 (1175)
Q Consensus 1 m~Ly~~~---------~sp~~~~v~ial----~~~gi~~e~~~v~~~~~---~~~P~g~vP~L~~~-dG~~l~eS~aI~~ 63 (1175)
|+||+.+ .||++++++++| +++|++|+.+.+++... .+||.|+||+|+.+ ||.+|+||.||++
T Consensus 20 i~Ly~~~~~~~~~~~~~cP~~~rv~~~L~lL~e~kgi~ye~~~vd~~~~pfl~~nP~GkVPvL~d~~~g~~l~ES~aI~~ 99 (291)
T 2yv9_A 20 LELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNVNSEAFKKNFLGAQPPIMIEEEKELTYTDNREIEG 99 (291)
T ss_dssp EEEEEEBCSSCTTSBCCCHHHHHHHHHHHHHHHTTSCEEEEEEECTTCHHHHHHHTTCCSCEEEEGGGTEEECSHHHHHH
T ss_pred EEEEEecCCCCcCccCcChHHHHHHHHHHHHHHhcCceeEEEEeCCCChhHHhcCCCCCCCEEEEcCCCeEEeCHHHHHH
Confidence 4788755 379999999999 79999999999997643 36899999999754 8999999999999
Q ss_pred HHcC-----------CChHHHHHHHHHHHHHhhhchhhhhhh--hcCCC--------------CchHHHHHHHHHHHHHh
Q psy7266 64 YLSK-----------FDTKNESAINQWLEWESVELFPSVLSF--FDNPK--------------VLPDNLKTKLNVLNEAI 116 (1175)
Q Consensus 64 YL~p-----------~~~~~~a~v~~wl~~~~~~l~p~~~~~--~~~g~--------------~~~~~l~~~L~~Le~~L 116 (1175)
||.. .++..+... .++. ..+...+... ...+. .....+.+.|..||++|
T Consensus 100 YL~~~~~~~~~pL~p~d~~~~~~~-~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L 175 (291)
T 2yv9_A 100 RIFHLAKEFNVPLFEKDPSAEKRI-ENLY---RNFKLFLRAKVEFDKGKKEPSRVEDLPAQIKVHYNRVCEQLSNIDQLL 175 (291)
T ss_dssp HHHHHHHHTTCCCCCCCHHHHHHH-HHHH---HHHHHHHHHHHHHTTTCSSCCCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCCCCHHHHHHH-HHHH---HHHHHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9963 222211111 1111 0010000000 00010 11356789999999999
Q ss_pred c---CCcccCCCCCccchhHHHHHHHHhhC---CCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 117 S---NSFLIENSTTVADICIWTCVYPLLSD---SKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 117 ~---~~fLvG~~lTlADi~l~~~L~~~~~~---~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
. ++||+|+++|+|||++++.|.++... .........||+|.+|+++|.++|+|+++..
T Consensus 176 ~~~~~~yl~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~~P~l~aw~~r~~~rPa~~~~~~ 239 (291)
T 2yv9_A 176 SERKSRYLLGNSMTEYDCELMPRLHHIRIIGLSLLGFDIPHNFTHLWAYILTAYRTAAFIESCP 239 (291)
T ss_dssp HHHCCSSSSSSSCCHHHHHHHHHHHHHHHHHHHTTSCCSCTTCHHHHHHHHHHTTCHHHHHTCC
T ss_pred hhcCCCeecCCCCcHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHCChhHHHhCC
Confidence 8 48999999999999999988765311 1111223679999999999999999998753
|
| >4fqu_A Putative glutathione transferase; glutathionyl-hydroquinone reductases, oxidoredu; 3.00A {Sphingobium chlorophenolicum} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-16 Score=172.89 Aligned_cols=173 Identities=14% Similarity=0.095 Sum_probs=130.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCC--cEEEEecCcccc--------------------------------cCCCCcccE
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTK--LDVELVDVADAR--------------------------------LLLSKTVPV 46 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~--~e~~~v~~~~~~--------------------------------~~P~g~vP~ 46 (1175)
+.||.+..||+++|++|+++++|++ +.+..|+....+ .++..+||+
T Consensus 45 y~Ly~s~~CPwAhR~~I~r~lKGLe~~I~~~vv~~~~~~~~w~F~~~~~~~~dp~~g~~~l~e~Y~~~~p~y~gr~tVPv 124 (313)
T 4fqu_A 45 YHLYAGFACPWAHRVLIMRALKGLEEMISVSMVNAYMGENGWTFLPGDDVVPDSINGADYLYQVYTAADPTYTGRVTIPI 124 (313)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCTTTSEEEECCSCCBTTBSBCCSCTTCBCCTTTCCSBTHHHHHHHCTTCCBCCCSCE
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCcceeEEEeCCccCCCCceecCCCCCCCCCCcccchHHHHHHhhCCCCCCCceeeE
Confidence 4799999999999999999999985 445545431100 123468999
Q ss_pred EEeC-CCcEEe-CHHHHHHHHc---------CCCh---HHHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHHH
Q psy7266 47 LELD-DGSQLF-SANQSCLYLS---------KFDT---KNESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLKT 107 (1175)
Q Consensus 47 L~~~-dG~~l~-eS~aI~~YL~---------p~~~---~~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~~ 107 (1175)
|++. .|.++. ||.+|++||. |.++ ..++++++|++|....+...+....+... .+...+..
T Consensus 125 L~D~~~~~IV~nES~~IiryL~~~f~~~~~~p~Dlyp~alR~~id~~~~~i~~~in~gvy~~gfa~~qeaye~a~~~l~~ 204 (313)
T 4fqu_A 125 LWDKVEKRILNNESSEIIRILNSAFDDVGALPGDYYPAEFRPEIDRINARVYETLNNGVYRSGFATTQEAYEEAFYPLFD 204 (313)
T ss_dssp EEETTTTEEEECCHHHHHHHHHSTTGGGTCCCCCSSCGGGHHHHHHHHHHHHHHTTTHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred EEECCCCcEeecCHHHHHHHHHhhcCCcCCCCCCcCcHHHHHHHHHHHHhhhHhHhHHHHHhhhcCCHHHHHHHHHHHHH
Confidence 9854 456555 9999999996 2232 35889999999998877766655443222 22356788
Q ss_pred HHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHh-----hCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 108 KLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLL-----SDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 108 ~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~-----~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
.|+.||++|+ ++||+|+++|+|||.+|++|.++. ...........||||.+|+++|.++|.|++..
T Consensus 205 ~Ld~LE~~L~~~~yl~Gd~~T~ADi~l~ptL~Rfd~vy~~~fk~n~~~i~dyP~L~~w~~~l~~~P~~~~T~ 276 (313)
T 4fqu_A 205 TLDWLEEHLTGREWLVGDRLTEADIRLFPTLVRFDAIYHGHFKCNLRRIADYPNLSRLVGKLASHERVAPTI 276 (313)
T ss_dssp HHHHHHHHTTTCSSSBTTBCCHHHHHHHHHHHHHTTTHHHHTCCCSSCGGGCHHHHHHHHHHHHSTTTGGGC
T ss_pred HHHHHHHHhccCCcCCCCCCcHHHHHHHHHHHHHhhhhhhhhccccCccccChHHHHHHHHHhcChHHHhHC
Confidence 8999999999 999999999999999999998753 12222334578999999999999999999863
|
| >4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=175.63 Aligned_cols=156 Identities=13% Similarity=0.009 Sum_probs=107.8
Q ss_pred ecCCCchHHHHHHHHHhcCCCcEEEEecCcc----------------cccCCCCcccEEEeC-CCcEEeCHHHHHHHHc-
Q psy7266 5 SNRNNVQTLKLLITAEFSTTKLDVELVDVAD----------------ARLLLSKTVPVLELD-DGSQLFSANQSCLYLS- 66 (1175)
Q Consensus 5 ~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----------------~~~~P~g~vP~L~~~-dG~~l~eS~aI~~YL~- 66 (1175)
+.+.||+|+|||++|.++||||+.+.|++.+ ...||.|+||+|+.. ||.+|+||.+|++||.
T Consensus 18 ~~~~SP~~~kvr~~L~~kgi~y~~~~v~~~~~~~~~~~~g~~~~~~~~~~~P~~~VPvL~~~d~g~~l~ES~aI~~YL~~ 97 (253)
T 4f03_A 18 HSPWSPNTWKIRYALNYKGLKYKTEWVEYPDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNTKKVVEDSAAIAKYLDE 97 (253)
T ss_dssp TCCCCHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHTCCCSEECTTCCEECCSCEEEETTTTEEEESHHHHHHHHHH
T ss_pred CCCcChhHHHHHHHHHHcCCCCEEEEEccccchhhhhhcCCCCchhhHhhCCCCccCeEEeCCCCEEEecHHHHHHHHHH
Confidence 4567999999999999999999999999753 126899999999864 5899999999999996
Q ss_pred --CC------Ch---HHHHHHHHHHHHHhhhchhhhhhhhc------------------CC--------CCchHHHHHHH
Q psy7266 67 --KF------DT---KNESAINQWLEWESVELFPSVLSFFD------------------NP--------KVLPDNLKTKL 109 (1175)
Q Consensus 67 --p~------~~---~~~a~v~~wl~~~~~~l~p~~~~~~~------------------~g--------~~~~~~l~~~L 109 (1175)
|. ++ ..+..++.|.......+.+.+..... .+ ....+.+.+.|
T Consensus 98 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (253)
T 4f03_A 98 TYPDTPKLFPAGTDAFQAAFLDFAWPVLGFPVFMLVILDTANSLLPRSHDYFRSTREQKFGKKLEELATEEEWAKVEAGL 177 (253)
T ss_dssp HCTTSCCSSCTTCHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCGGGTCCHHHHHHHHHHH
T ss_pred hCCCCcCCCCCchHHHHHHHHHHhhhhhhhchhhHHHHHHHhhcchhhHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH
Confidence 21 11 22333344433322222221111100 01 12234567777
Q ss_pred HHHHHHhc------CCcccCCC--CCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHH
Q psy7266 110 NVLNEAIS------NSFLIENS--TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDR 162 (1175)
Q Consensus 110 ~~Le~~L~------~~fLvG~~--lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~r 162 (1175)
..|+.+|. ++||+|++ +|+|||++++.|.++..... ...+.||+|.+|++.
T Consensus 178 ~~l~~~L~~~~~~~~~~l~Gd~~~~s~ADi~~~~~l~~~~~~~~--~~~~~~~~l~~W~dg 236 (253)
T 4f03_A 178 AKLKGYLDANGKGNDLLLMGAQGGITYSDIQIASFFVWAKIIWG--EGSEKWKRLISLHDG 236 (253)
T ss_dssp HHHHHHHHTTCTTSTTSTTCTTSCCCHHHHHHHHHHHHHHHHHC--TTSHHHHHHHTHHHH
T ss_pred HHHHHHHHHhccCCCCeEeCCCCCcCHhHHHHHHHHHHHHHHcC--CChhHCHHHHHHccc
Confidence 88888774 57999986 99999999999988653322 345789999999863
|
| >4g0i_A Protein YQJG; glutathionyl-hydroquinone reductase, oxidoreductase; HET: MES; 2.05A {Escherichia coli} PDB: 3r3e_A* 4g0k_A* 4g0l_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.1e-16 Score=173.58 Aligned_cols=173 Identities=16% Similarity=0.154 Sum_probs=129.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCC--cEEEEecCccc---------------------------------ccCCCCccc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTK--LDVELVDVADA---------------------------------RLLLSKTVP 45 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~--~e~~~v~~~~~---------------------------------~~~P~g~vP 45 (1175)
+.||.+..||+++|++|+++++|++ +.+..|+.... ..++.++||
T Consensus 55 y~Ly~s~~CPwAhR~~I~~~lkGLe~~I~~~vv~~~~~~~gW~f~~~~~g~~~d~~~~~~~l~e~Y~~~~p~y~gr~tVP 134 (328)
T 4g0i_A 55 YHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQNEFLYQLYLHADPHYSGRVTVP 134 (328)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCTTTEEEEECCSCCBTTBSBCCCCSTTCCCCTTTCCSBHHHHHHHHCTTCCBCCCSC
T ss_pred EEEEEeCCCcHHHHHHHHHHHhCCCcceeEEEeCCccCCCCCcccCCCCCCCCCcccCcchHHHHHHhhCCCCCCCceee
Confidence 4799999999999999999999986 34444432110 012357899
Q ss_pred EEEeC-CCcEEe-CHHHHHHHHc---------CCC---hHHHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHH
Q psy7266 46 VLELD-DGSQLF-SANQSCLYLS---------KFD---TKNESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLK 106 (1175)
Q Consensus 46 ~L~~~-dG~~l~-eS~aI~~YL~---------p~~---~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~ 106 (1175)
+|++. .|.++. ||.+|++||. +.+ ...++.+++|.+|....+...+....+... .....+.
T Consensus 135 vL~D~~~~~IV~nES~~IiryL~~~f~~~~~~~~Dlyp~~lr~~Id~~~~~i~~~inngvy~~gfA~~qeaye~a~~~l~ 214 (328)
T 4g0i_A 135 VLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQEAYDEAVAKVF 214 (328)
T ss_dssp EEEETTTTEEEECCHHHHHHHHHHTTGGGTCCSCCSSCGGGHHHHHHHHHHHHHHTTTTHHHHHTCCSHHHHHHHHHHHH
T ss_pred EEEECCCCcEEecCHHHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCHHHHHHHHHHHH
Confidence 99854 456554 9999999996 112 235788999999888777665555443222 2345678
Q ss_pred HHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCC-----CCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 107 TKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDS-----KVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 107 ~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~-----~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
+.|+.||++|+ ++||+|+++|+|||.+|++|.++.... ........||||.+|+++|.++|.|++..
T Consensus 215 ~~Ld~LE~~La~~~YL~Gd~~TlADI~L~ptL~Rfd~vy~~~fk~n~~~i~dyP~L~~w~~~l~q~P~~~~T~ 287 (328)
T 4g0i_A 215 ESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETV 287 (328)
T ss_dssp HHHHHHHHHTTTSSSSSSSSCCHHHHHHHHHHHHHTTTTTTTTCCCSCCGGGCHHHHHHHHHHHTSTTTGGGC
T ss_pred HHHHHHHHhhcCCCeecCCCCcHHHHHHHHHHHHHHhhhhhhcCCCccccccChHHHHHHHHHhcchHHHHhC
Confidence 88999999999 999999999999999999998864221 11223467999999999999999998864
|
| >2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear protein, RNA-binding protein; HET: MSE; 2.0A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=164.32 Aligned_cols=147 Identities=18% Similarity=0.302 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeCCCcEEeCHHHHHHHHc---------CCChHHHHHHHHHHHH
Q psy7266 12 TLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELDDGSQLFSANQSCLYLS---------KFDTKNESAINQWLEW 82 (1175)
Q Consensus 12 ~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~---------p~~~~~~a~v~~wl~~ 82 (1175)
+.-++-+..+.++... ..=..+|| |+||+|+.+||.+|+||.+|++||. |.++.+++.+++|++|
T Consensus 4 ~~~~~~~~~~~~~~~~-----~~~~~~nP-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~~~~~a~~~~~~~~ 77 (174)
T 2uz8_A 4 AAELSLLEKSLGLSKG-----NKYSAQGE-RQIPVLQTNNGPSLMGLTTIAAHLVKQANKEYLLGSTAEEKAMVQQWLEY 77 (174)
T ss_dssp HHHHHHHHHHTTCCSC-----CCCEEETT-TTEEEEECSSCCEEESHHHHHHHHHHHTTCGGGGCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCcc-----HHHHhcCC-CccceEEcCCCCEeecHHHHHHHHHHhCCCcccCCcCHHHHHHHHHHHHH
Confidence 3456667777777521 01124789 9999998669999999999999985 5677889999999999
Q ss_pred HhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHH
Q psy7266 83 ESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYD 161 (1175)
Q Consensus 83 ~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~ 161 (1175)
....+.+ ....+.+.+.|+.||++|+ ++||+|+++|+|||++++.|.++... ........||+|.+|++
T Consensus 78 ~~~~~~~---------~~~~~~~~~~l~~le~~L~~~~fl~G~~~t~ADi~l~~~l~~~~~~-~~~~~~~~~p~l~~w~~ 147 (174)
T 2uz8_A 78 RVTQVDG---------HSSKNDIHTLLMDLNSYLEDKVYLTGYNFTLADILLYYGLHRFIVD-LTVQEKEKYLNVSRWFC 147 (174)
T ss_dssp HHHHTC--------------CHHHHHHHHHHHHGGGCSSTTSSSCCHHHHHHHHHHHHHHTT-CCHHHHHHTHHHHHHHH
T ss_pred HHHhcCc---------cchHHHHHHHHHHHHHHhccCcEEeCCCCCHHHHHHHHHHHHHHHh-ccHHHHhhChHHHHHHH
Confidence 8876543 1234678999999999999 99999999999999999999986421 11223467999999999
Q ss_pred HHhcCHHHHHHHH
Q psy7266 162 RISKLPQVQKALK 174 (1175)
Q Consensus 162 rl~~~P~~~~~l~ 174 (1175)
+|.++|.+++++.
T Consensus 148 ~~~~~p~~~~~~~ 160 (174)
T 2uz8_A 148 HIQHYPGIRQHLS 160 (174)
T ss_dssp HHHHSTTTCTTSC
T ss_pred HHHhCHhHHhhcc
Confidence 9999999987653
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=177.67 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=78.0
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ .+.+|| +|+..|+.-+||. ++.....+|.+.|.++++|
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~-n~l~Ar-----~~gG~fiLRieDT-------------D~~R~~~e~~~~I~edL~w 87 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICL-NFGIAQ-----DYKGQCNLRFDDT-------------NPVKEDIEYVESIKNDVEW 87 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHH-HHHHHH-----HTTCEEEEEECCC-------------CGGGCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHH-HHHHHH-----HcCCEEEEEECCC-------------CchhcCHHHHHHHHHHHHH
Confidence 77889999999999999998877 777766 4667788888774 4556788999999999999
Q ss_pred cccccccc-CCCCCHHHHHHHHHHHHHHHHcCCEEe
Q psy7266 364 FEIDFDYF-GRTSTPQQTEIVQHLFDRVHKAGFTSS 398 (1175)
Q Consensus 364 lgi~~D~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~ 398 (1175)
||+.+|.- ++.| +|.+...++..+|+++|++|.
T Consensus 88 LGl~wde~~~~qS--er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 88 LGFHWSGNVRYSS--DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp TTCCCSSSCEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCCeehc--ccHHHHHHHHHHHHHCCCcee
Confidence 99999653 3444 488888888899999999996
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-15 Score=180.72 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=79.0
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
++|..+|.|||+|||||++++++ ...++| +|++.|+.-+||. ++.....+|.+.|.++++|
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~-n~l~Ar-----~~gG~fiLRIEDT-------------D~~R~~~e~~~~IledL~w 127 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLL-DFNTAR-----QYGGQFNLRMDDT-------------NPELARQEYVDSIADDLKW 127 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHH-HHHHHH-----HTTCEEEEEECCC-------------CTTTCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHH-HHHHHH-----HcCCEEEEEECcC-------------CcccccHHHHHHHHHHHHH
Confidence 78899999999999999998777 666665 5677888888774 4555678999999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEe
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSS 398 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 398 (1175)
|||.+|. .++.| +|.+..+++..+|+++|++|.
T Consensus 128 LGl~wde~~~~qS--er~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 128 LGLDWGEHFYYAS--DYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HTCCCTTCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCcccHh--hhHHHHHHHHHHHHHCCCcEe
Confidence 9999964 34555 499999999999999999996
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=169.01 Aligned_cols=275 Identities=17% Similarity=0.192 Sum_probs=153.9
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++..+|.|||+|||||++++++ +..++| ++++.|+.-+||. ++.....++.+.|.++|+|
T Consensus 2 v~~RFAPSPtG~lHiG~artal~-n~l~Ar-----~~~G~filRieDt-------------D~~R~~~~~~~~i~~dL~w 62 (492)
T 2cfo_A 2 VRVRLAPSPTGNLHIGTARTAVF-NWLYAR-----HRGGKFILRIEDT-------------DRERSRPEYTENILEGLQW 62 (492)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHH-HHHHHH-----HTTCEEEEEECCC-------------SSSSCCHHHHHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHHH-HHHHHH-----hcCCeEEEEEeeC-------------CccccchHHHHHHHHHHHH
Confidence 46778899999999999998776 555554 5667777777764 3445568899999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCccccc-c---eecccCCCccccCCCCCccccc
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD-R---FVEGVCPKCRYEDARGDQCDGC 438 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d-~---~V~g~cP~c~~~d~~G~~c~~~ 438 (1175)
|||.+|- .++.| ++.+..+++..+|.++|++|. -||... -|.. + .-.|..| .|
T Consensus 63 LGl~wde~~~~QS--~r~~~y~~~~~~Li~~G~AY~-----c~ct~~--el~~~r~~~~~~g~~~--~y----------- 120 (492)
T 2cfo_A 63 LGLTWDEGPYFQS--DRLDLYRQAIQTLLDKGLAYY-----CYCTPE--ELEALRAEQKAKGQAP--RY----------- 120 (492)
T ss_dssp TTCCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE-----ECCCHH--HHHHHHHHHHHHTCCS--SC-----------
T ss_pred cCCCCCCCCcccc--CCHHHHHHHHHHHHHCCCceE-----ecCCHH--HHHHHHHHHHhcCCCC--CC-----------
Confidence 9999996 44444 488899999999999999996 233331 1100 0 0001100 00
Q ss_pred CCccccccccCCcccCCCCccEE--e----ecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC-CcEeee
Q psy7266 439 GQLINAIELIQPRCKQCSQAPTV--K----SSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGL-KPRCIT 511 (1175)
Q Consensus 439 g~~~~~~el~~~~c~r~~~~~~~--~----~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l-~dw~IS 511 (1175)
...| |.-+.-+. + ....|=++++.- ....|.+..+..+ .+-...+ .|+.|=
T Consensus 121 ----------~~~c-r~ls~~e~~~~~~~g~~~~iR~k~~~~----------~~~~~~D~v~G~~-~~~~~~~~~D~Vl~ 178 (492)
T 2cfo_A 121 ----------DNRH-RHLTPEEQAAFEAAGRTPVIRFKIEDD----------RQIEWQDLVRGRV-SWQGADLGGDMVIA 178 (492)
T ss_dssp ----------CCTT-TTCCHHHHHHHHHTTCCCEEEECCCTT----------CEEEEEETTTEEE-EEEGGGGCSSEEEE
T ss_pred ----------Cccc-ccCCHHHHHHHHhCCCCceEEEEcCCC----------CceEEEecceeee-eecccccCCCeEEE
Confidence 0011 10000000 0 001111111100 0000111111000 0000245 688777
Q ss_pred ccC--CCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEE-eeccccchhHhHHHHHHHHhCCCcccCeEEEee
Q psy7266 512 RDL--KWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQF-MAKDNVPFHSIMFPATLVAAGDQYTKVNHIMAT 588 (1175)
Q Consensus 512 R~~--~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~-~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~ 588 (1175)
|.- . |+..|.|+...-| |+ ....+-|+ -|.|++.. +.....+..++| +++| .+.++
T Consensus 179 R~d~~p-~~G~PtY~la~vv--------------DD--~~~gIthviRG~D~~~~-t~~q~~l~~alg--~~~P-~~~H~ 237 (492)
T 2cfo_A 179 RAAPRG-EIGYPLYNLVVVV--------------DD--IAMGITDVIRGEDHIGN-TPKQILLYEALG--ATPP-NFAHT 237 (492)
T ss_dssp CSCCTT-SCCCBCHHHHHHH--------------HH--HHTTCSEEEEEGGGTTH-HHHHHHHHHHTT--CCCC-EEEEE
T ss_pred EecCCC-CCCceeehhhhhh--------------hh--hcCCCCeEEEchhhhhC-HHHHHHHHHHcC--CCCc-eEEEe
Confidence 742 2 2334443210000 00 11112244 48888743 222223334444 5666 55666
Q ss_pred ce-eecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCC---CCCCccccHHHHH
Q psy7266 589 EY-LNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRP---ENQDTSFSWQDLA 643 (1175)
Q Consensus 589 g~-l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~---~~~D~~f~~~~~~ 643 (1175)
++ ++.+|+|||||.||+ ...++.+.||.++++|.||+..+. .+.+--|+.+.+.
T Consensus 238 plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~~~e~i 295 (492)
T 2cfo_A 238 PLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAA 295 (492)
T ss_dssp CCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCCHHHHH
T ss_pred eeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccCHHHHH
Confidence 77 478999999999997 788999889999999999998643 2223457776654
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=160.23 Aligned_cols=280 Identities=15% Similarity=0.132 Sum_probs=154.9
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREV 360 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~ 360 (1175)
-.++++...|+|||+|||||+|++++ +|.+||. ..|.-++.+-- +++......+.+.|.++
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~-n~~~Ar~--~~G~~iLRieD----------------tD~~r~~~~~~~~I~~~ 71 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALF-NFLFARK--EKGKFILRIED----------------TDLERSEREYEEKLMES 71 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHH-HHHHHHH--HTCEEEECBCC----------------SSCCSGGGHHHHHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHH-HHHHHHH--cCCeEEEEEec----------------CCccccHHHHHHHHHHH
Confidence 35789999999999999999999888 9999998 56765555432 33455667788889999
Q ss_pred HhhccccccccC-------CCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccce----ecccCCCccccC
Q psy7266 361 YEWFEIDFDYFG-------RTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRF----VEGVCPKCRYED 429 (1175)
Q Consensus 361 ~~~lgi~~D~~~-------~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~----V~g~cP~c~~~d 429 (1175)
++|||+.+|... .....++.+..+++..+|.++|.+|.. ||...+ |...- -.|.-| .|
T Consensus 72 l~wlGl~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c-----~ct~ee--l~~~r~~~~~~g~~~--~y-- 140 (481)
T 2o5r_A 72 LRWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYV-----YAYPEE--IEEMREKLLSEGKAP--HY-- 140 (481)
T ss_dssp HHHHTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEEE-----CCCSTT--THHHHHHHHHTTCCC--CB--
T ss_pred HHHcCCCCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeEe-----cCCHHH--HHHHHHHHHhcCCCC--CC--
Confidence 999999998631 122335889999999999999999853 444432 11100 001000 00
Q ss_pred CCCCcccccCCccccccccCCcccCCCCccEEeec-cc--ccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCC
Q psy7266 430 ARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSS-TQ--LFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLK 506 (1175)
Q Consensus 430 ~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~-~q--wfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~ 506 (1175)
.|. | .|..+... +.. .-...|.+.++|.. +. +.+. +. + .+. .|.. ...+.
T Consensus 141 -d~~-~-s~r~l~~~-e~~--~~~~~G~~~~iR~k~~~~~~~~~-----D~----~-~G~-~~~~----------~~~~~ 193 (481)
T 2o5r_A 141 -SQE-M-FEKFDTPE-RRR--EYEEKGLRPAVFFKMPRKDYVLN-----DV----V-KGE-VVFK----------TGAIG 193 (481)
T ss_dssp -CGG-G-GTTTCCHH-HHH--HHHHTTCCCEEEECCCSSCEEEE-----ET----T-TEE-EEEC----------TTSSC
T ss_pred -CCc-h-hhhcCCHH-HHH--HHHhcCCcceEEEEcCCCceEEE-----ec----c-cce-eEec----------cccCC
Confidence 010 0 01111100 000 00001222222211 10 0000 00 0 000 0100 02456
Q ss_pred cEeeeccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEE
Q psy7266 507 PRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIM 586 (1175)
Q Consensus 507 dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~ 586 (1175)
|+.|-|.- |. |.+.....| + ...+.. + .-+-|.|++. |+.....++.++| +++|. +.
T Consensus 194 D~Vl~RsD--G~--ptY~~a~vv------D-D~~~gi-------t-hvirG~D~~~-~t~~q~~l~~aLG--~~~p~-~~ 250 (481)
T 2o5r_A 194 DFVIMRSN--GL--PTYNFACVV------D-DMLMEI-------T-HVIRGDDHLS-NTLRQLALYEAFE--KAPPV-FA 250 (481)
T ss_dssp BEEEECTT--SC--BCHHHHHHH------H-HHHTTC-------S-EEEEEGGGHH-HHHHHHHHHHHTT--CCCCE-EE
T ss_pred CeEEEccC--CC--cchhhHHHH------H-HHhCCC-------C-eEEEChhHHH-hHHHHHHHHHHcC--CCCCe-EE
Confidence 88887753 22 322100000 0 000111 1 1246999874 3333334555555 55664 55
Q ss_pred eece-eecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCC--CCCccccHHH
Q psy7266 587 ATEY-LNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPE--NQDTSFSWQD 641 (1175)
Q Consensus 587 ~~g~-l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~--~~D~~f~~~~ 641 (1175)
++++ ++.+|+||||+.|++ ...++++.||.++++|.|+...+.. +.+..|+.++
T Consensus 251 H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~s~~~~~e~~~~~e 307 (481)
T 2o5r_A 251 HVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLGWSHPEGKELLTLEE 307 (481)
T ss_dssp EECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSSBCCTTCCCCCCHHH
T ss_pred EEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCCcccccCCHHH
Confidence 5666 478999999999998 8999999999999999999986432 2223455544
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-14 Score=169.73 Aligned_cols=264 Identities=14% Similarity=0.143 Sum_probs=153.8
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++..+|.|||+|||||++++++ +..+||-+ .| .|+.-+|| +++.....++.+.|.++|+|
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~-n~l~Ar~~--~G---~filRieD-------------tD~~R~~~~~~~~I~~dL~w 86 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALF-NWMFARKE--GG---KFILRIED-------------TDTERSSREYEQQILESLRW 86 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHH-HHHHHHHH--TC---EEEECBCC-------------CCTTTCCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCCccHHHHHHHHH-HHHHHHHc--CC---EEEEEEee-------------CCcccccHHHHHHHHHHHHH
Confidence 67889999999999999998877 88887752 33 45555554 46666778899999999999
Q ss_pred cccccccc---------CCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCc
Q psy7266 364 FEIDFDYF---------GRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQ 434 (1175)
Q Consensus 364 lgi~~D~~---------~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~ 434 (1175)
|||.+|.- ++.| ++.+..+++..+|.++|++|.. ||...+-- .. . .| .|. |.
T Consensus 87 lGl~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~c-----~ct~eel~--~~--~--~~--~Y~---~~- 147 (488)
T 3afh_A 87 CGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYV-----VYDKEDPS--KE--L--FT--TYE---YP- 147 (488)
T ss_dssp TTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEEE-----EECSSSTT--SE--E--EE--ESS---CC-
T ss_pred cCCCCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEec-----CCCHHHHH--hh--c--CC--CCC---ch-
Confidence 99999973 2333 4778999999999999999975 56553221 00 0 00 011 11
Q ss_pred ccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccC
Q psy7266 435 CDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDL 514 (1175)
Q Consensus 435 c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~ 514 (1175)
|..+ ..|.+..+| |+++. ....|.+..+..+ .+-...+.||+|-|.-
T Consensus 148 ~~~~---------------~~G~~~~iR------~k~~~-----------~~~~~~D~v~G~~-~~~~~~~~D~Vl~R~D 194 (488)
T 3afh_A 148 HEYK---------------EKGHPVTIK------FKVLP-----------GKTSFEDLLKGYM-EFDNSTLEDFIIMKSN 194 (488)
T ss_dssp HHHH---------------HTTCCEEEE------ECCCS-----------SEEEEEETTTEEE-EEEGGGSCCEEEECTT
T ss_pred hhHH---------------hcCCCceEE------EECCC-----------CceeEEeccceeE-eecCCCCCCeEEEecC
Confidence 1100 012222222 11110 0000100000000 0000245788888863
Q ss_pred CCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-eccccchhHhHHHHHHHHhCCCcccCeEEEeecee-e
Q psy7266 515 KWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-N 592 (1175)
Q Consensus 515 ~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~ 592 (1175)
| .|.++.... .|+ ....+.|++ |.|++.. +-....+..++| ++.|. +.++.++ +
T Consensus 195 --G--~PtY~lA~v--------------VDD--~~mgIThViRG~D~l~~-tp~q~~l~~aLG--~~~P~-f~H~pli~~ 250 (488)
T 3afh_A 195 --G--FPTYNFAVV--------------VDD--HLMRISHVFRGEDHLSN-TPKQLMIYEAFG--WEAPV-FMHIPLILG 250 (488)
T ss_dssp --S--CBCHHHHHH--------------HHH--HHTTCSEEEEEGGGGGG-HHHHHHHHHHHT--CCCCE-EEEECCEEC
T ss_pred --C--CeehhhHHH--------------HHH--HhcCCCEEEEchhhhhC-HHHHHHHHHHcC--CCCCe-EEEEeeeeC
Confidence 2 232210000 000 111123444 9998742 222223344554 55664 3344555 7
Q ss_pred cCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCC-CCCccccHHHHH
Q psy7266 593 YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPE-NQDTSFSWQDLA 643 (1175)
Q Consensus 593 ~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~-~~D~~f~~~~~~ 643 (1175)
.+|.|||||.|+ +...++.+.||.++++|.||+..+.. ..+..|+.+++.
T Consensus 251 ~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e~i 301 (488)
T 3afh_A 251 SDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKL 301 (488)
T ss_dssp TTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHHHG
T ss_pred CCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHHH
Confidence 899999999999 68999999999999999999986542 223567777654
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-14 Score=168.25 Aligned_cols=279 Identities=16% Similarity=0.222 Sum_probs=154.7
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++..+|.|||+|||||++++++ +..+||- ..|. |+.=+| ++++.....++.+.|.++|+|
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~-n~l~Ar~--~gG~---fiLRie-------------DtD~~R~~~~~~~~I~~~L~w 67 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALF-NWAYARH--TGGT---FVFRIE-------------DTDAQRDSEESYLALLDALRW 67 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHH-HHHHHHH--HTCE---EEECBC-------------CCCTTTCCHHHHHHHHHHHHH
T ss_pred eeEEECcCCCCCccHHHHHHHHH-HHHHHHH--cCCE---EEEEEC-------------cCCCcccChHHHHHHHHHHHH
Confidence 67888899999999999998887 9999985 3443 333343 457777788999999999999
Q ss_pred ccccccc---------cCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCccccc-ce--ecccCCCccccCCC
Q psy7266 364 FEIDFDY---------FGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD-RF--VEGVCPKCRYEDAR 431 (1175)
Q Consensus 364 lgi~~D~---------~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d-~~--V~g~cP~c~~~d~~ 431 (1175)
||+.+|- .++.| ++.+..+++..+|.++|++|.. ||...+ |.. +. -.|.-| +|
T Consensus 68 lGl~wDegp~~gG~~~~~~QS--~r~~~y~~~~~~L~~~g~aY~c-----~ct~ee--l~~~r~~~~~~~~~--~Y---- 132 (498)
T 2ja2_A 68 LGLDWDEGPEVGGPYGPYRQS--QRAEIYRDVLARLLAAGEAYHA-----FSTPEE--VEARHVAAGRNPKL--GY---- 132 (498)
T ss_dssp HTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEEE-----CCCHHH--HHHHHHHTTCCTTS--CC----
T ss_pred cCCCcCCCcCcCCCCCCeeee--cCHHHHHHHHHHHHHcCCeEEe-----CCCHHH--HHHHHHHHhcCCCC--CC----
Confidence 9999997 23333 5889999999999999999964 343321 110 00 001000 00
Q ss_pred CCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeee
Q psy7266 432 GDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCIT 511 (1175)
Q Consensus 432 G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~IS 511 (1175)
-.. |..+. ..+... -...|.++++| |+++. ....|.+..+..+ .+-...+.||+|-
T Consensus 133 ~~~---cr~l~-~~e~~~--~~~~g~~~~iR------~k~~~-----------~~~~~~D~v~G~i-~~~~~~~~D~Vi~ 188 (498)
T 2ja2_A 133 DNF---DRHLT-DAQRAA--YLAEGRQPVVR------LRMPD-----------DDLAWNDLVRGPV-TFAAGSVPDFALT 188 (498)
T ss_dssp CCG---GGGCC-HHHHHH--HHHTTCCCEEE------ECCCS-----------SCEEEEETTTEEE-EECTTCSCCCBSB
T ss_pred CCc---cccCC-HHHHHh--hhccCCCceEE------EECCC-----------CceEEEecccceE-eecccccCcceeE
Confidence 001 11100 000000 00012222222 11110 0000111110000 0000246788887
Q ss_pred ccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-eccccch---hHhHHHHHHHHhCCCcccCeEEEe
Q psy7266 512 RDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVPF---HSIMFPATLVAAGDQYTKVNHIMA 587 (1175)
Q Consensus 512 R~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~f---h~~~~pa~l~~~~~~~~~p~~i~~ 587 (1175)
|.- | .|.+.+-. ..|| ....+-|++ |.|++.. |..++-++.. .|.+++.|... +
T Consensus 189 R~D--g--~ptY~lA~--------------vVDD--~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~g~~~P~~~-h 246 (498)
T 2ja2_A 189 RAS--G--DPLYTLVN--------------PCDD--ALMKITHVLRGEDLLPSTPRQLALHQALIR-IGVAERIPKFA-H 246 (498)
T ss_dssp CTT--S--CBCHHHHH--------------HHHH--HHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTSCCCCCEEE-E
T ss_pred ccC--C--CcchhhHH--------------HHHh--hhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcCCCCCCeEE-E
Confidence 752 2 23221000 0000 111123444 9998753 3334434322 33346666444 3
Q ss_pred ece-eecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCC--CCCccccHHHHH
Q psy7266 588 TEY-LNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPE--NQDTSFSWQDLA 643 (1175)
Q Consensus 588 ~g~-l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~--~~D~~f~~~~~~ 643 (1175)
..+ ++.+|.||||+.|+ ++..++.+.||.++++|.||+..+.. .....|+.+++.
T Consensus 247 ~plil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~lG~s~~~~~e~~s~~eli 304 (498)
T 2ja2_A 247 LPTVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMV 304 (498)
T ss_dssp ECCEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTSSCCSCSSCCCCCHHHHH
T ss_pred eeeeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHhCCCCCcccccCCHHHHH
Confidence 344 47899999999998 58899999999999999999986542 222567776653
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-14 Score=175.30 Aligned_cols=263 Identities=13% Similarity=0.139 Sum_probs=151.3
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|+|||+|||||++++++ ++.+||. ..|. |+.-+|+ +++.....++.+.|.++|+|
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~-n~l~Ar~--~~G~---~ilRieD-------------tD~~r~~~~~~~~I~~dL~w 190 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALF-NWMFARK--EGGK---FILRIED-------------TDTERSSREYEQQILESLRW 190 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHH-HHHHHHH--HTCE---EEECBCC-------------CCSSSCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCccHHHHHHHHH-HHHHHHh--cCCc---EEEEecC-------------cChhhccHHHHHHHHHHHHH
Confidence 56667799999999999999887 9999996 3444 4444444 45556678899999999999
Q ss_pred cccccccc---------CCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceeccc-CCCccccCCCCC
Q psy7266 364 FEIDFDYF---------GRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGV-CPKCRYEDARGD 433 (1175)
Q Consensus 364 lgi~~D~~---------~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~-cP~c~~~d~~G~ 433 (1175)
|||.+|.- ++.+ ++.+..+++..+|.++|++|.. ||...+ ++.. .| .|. |.
T Consensus 191 lGl~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~c-----~ct~~e-------l~~~~~~--~Y~---~~ 251 (592)
T 3al0_C 191 CGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYV-----VYDKED-------PSKELFT--TYE---YP 251 (592)
T ss_dssp TTCCCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEEE-----EEETTE-------EEEECCC--CSS---CC
T ss_pred cCCCCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceEe-----cCCHHH-------HHhhcCC--CCC---cH
Confidence 99999973 2444 3778999999999999999975 455432 1110 01 011 11
Q ss_pred cccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeecc
Q psy7266 434 QCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRD 513 (1175)
Q Consensus 434 ~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~ 513 (1175)
|..+ ..|.+..+| |+++. ....|....+..+ .+-...+.||+|-|.
T Consensus 252 -~~~~---------------~~g~~~~iR------~k~~~-----------~~~~~~D~v~G~~-~~~~~~~~D~Vl~R~ 297 (592)
T 3al0_C 252 -HEYK---------------EKGHPVTIK------FKVLP-----------GKTSFEDLLKGYM-EFDNSTLEDFIIMKS 297 (592)
T ss_dssp -HHHH---------------HTTCCEEEE------ECCCS-----------SCCEECCTTTCSE-ECCSSSSCCEEEECT
T ss_pred -HHHh---------------hcCCCceEE------EECCC-----------CCceeeeccccee-eeccccCCCeEEEcC
Confidence 1100 012222222 22210 0000111000000 000034678888885
Q ss_pred CCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-eccccchhHhHHHHHHHHhCCCcccCeEEEeecee-
Q psy7266 514 LKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL- 591 (1175)
Q Consensus 514 ~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l- 591 (1175)
- | .|.+.....| |+ ....+-|++ |.|++.. +.....+..++ +++.|.. .++.++
T Consensus 298 d--g--~ptY~~a~vv--------------DD--~~~githvirG~D~~~~-t~~q~~l~~al--g~~~P~~-~hlpli~ 353 (592)
T 3al0_C 298 N--G--FPTYNFAVVV--------------DD--HLMRISHVFRGEDHLSN-TPKQLMIYEAF--GWEAPVF-MHIPLIL 353 (592)
T ss_dssp T--S--CCCHHHHHHH--------------HH--HHTTCSBCCEEGGGGGG-HHHHHHHHTTT--TCCCCBC-CEECCCB
T ss_pred C--C--CeehhhHHHH--------------HH--HhcCCCeEEEchhhHhC-HHHHHHHHHHh--CCCCCeE-EEeeeee
Confidence 3 2 2322100000 00 000112333 8888653 22222333444 4555643 334444
Q ss_pred ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCC-CCCccccHHHHH
Q psy7266 592 NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPE-NQDTSFSWQDLA 643 (1175)
Q Consensus 592 ~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~-~~D~~f~~~~~~ 643 (1175)
+.+|.|||||.|+ +...++.+.||.++++|.||+..+.. ..+--|+.+.+.
T Consensus 354 ~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~s~~~~e~~s~~e~i 405 (592)
T 3al0_C 354 GSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKL 405 (592)
T ss_dssp CTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTBCCCSCSCCCTTTTG
T ss_pred CCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHHH
Confidence 7899999999999 68999999999999999999986532 222456766543
|
| >2hsn_A Methionyl-tRNA synthetase, cytoplasmic; protein complex protein interaction GST-fold, ligase/RNA binding protein complex; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-14 Score=139.39 Aligned_cols=130 Identities=21% Similarity=0.288 Sum_probs=103.1
Q ss_pred chHHHHHHHHHhcCCCcEEEEecCcccccCCCCcccEEEeC-CCcEEeCHHHHHHHHc----CCChHHHHHHHHHHHHHh
Q psy7266 10 VQTLKLLITAEFSTTKLDVELVDVADARLLLSKTVPVLELD-DGSQLFSANQSCLYLS----KFDTKNESAINQWLEWES 84 (1175)
Q Consensus 10 p~~~~v~ial~~~gi~~e~~~v~~~~~~~~P~g~vP~L~~~-dG~~l~eS~aI~~YL~----p~~~~~~a~v~~wl~~~~ 84 (1175)
++++|+.++|.+.|++|+ -.+||.|+||+|+.+ +|.+|+||+||++||+ +.++.++..+.+|+.|..
T Consensus 20 ~N~~Kv~l~L~elgl~~e--------l~~Npn~~vP~l~d~~~~~~l~esnAIl~YLa~~~~~~~~~~~~~~~~Wl~~~~ 91 (160)
T 2hsn_A 20 ANNLKIALALEYASKNLK--------PEVDNDNAAMELRNTKEPFLLFDANAILRYVMDDFEGQTSDKYQFALASLQNLL 91 (160)
T ss_dssp HHHHHHHHHHHHCCSTTC--------CEECSSCCSCCEEECSCCSCCCCHHHHHHHHTTCCTTTTSHHHHHHHHHTTTGG
T ss_pred CcHHHHHHHHHHhCCCce--------eeeCCCCccceEeeCCCCeEEEchHHHHHHHHHHccCCCHHHHHHHHHHHHHhc
Confidence 568999999999999999 347899999999744 5899999999999998 356788999999999876
Q ss_pred hhchhhhhhhhcCCCCchHHHHHHHHHHHHHhcCCcc--cCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHH
Q psy7266 85 VELFPSVLSFFDNPKVLPDNLKTKLNVLNEAISNSFL--IENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDR 162 (1175)
Q Consensus 85 ~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~~~fL--vG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~r 162 (1175)
++ .+ ..++... ..||++|. +|| +|+++|+|||++++.++.+..... . +|
T Consensus 92 ---~~--------~e-ai~~~~~--~vLd~~L~-~~L~~~G~~~tiADia~~~~~y~~~~~~~-----------~---~r 142 (160)
T 2hsn_A 92 ---YH--------KE-LPQQHVE--VLTNKAIE-NYLVELKEPLTTTDLILFANVYALNSSLV-----------H---SK 142 (160)
T ss_dssp ---GS--------SS-CCHHHHH--HHHHHHHH-HTCSCCCSSCCHHHHHHHHHHHHHHHHHH-----------H---HH
T ss_pred ---cc--------HH-HHHHHHH--HHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHccccH-----------h---HH
Confidence 11 11 2222222 78999998 999 999999999999998875432211 0 89
Q ss_pred HhcCH-HHHHHHHHH
Q psy7266 163 ISKLP-QVQKALKTW 176 (1175)
Q Consensus 163 l~~~P-~~~~~l~~~ 176 (1175)
|.++| .+++++...
T Consensus 143 ~~a~P~a~~~~~~~a 157 (160)
T 2hsn_A 143 FPELPSKVHNAVALA 157 (160)
T ss_dssp CSSCCHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHH
Confidence 99999 999987654
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.5e-14 Score=164.45 Aligned_cols=281 Identities=15% Similarity=0.163 Sum_probs=153.4
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++...|.|||+|||||++++++ ++.++|. +...|+.-+|| +++.....+|.+.|.++++|
T Consensus 26 v~~RFAPSPTG~lHiG~~rtal~-n~l~Ar~-----~~G~filRieD-------------tD~~R~~~~~~~~i~~dl~w 86 (490)
T 4g6z_A 26 VRTRFAPSPTGFIHLGNIRSALY-PWAFARK-----MKGTFVLRIED-------------TDVERSSQEAVDAILEGMAW 86 (490)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHH-HHHHHHH-----TTCEEEEEECC-------------CCGGGCCHHHHHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHHH-HHHHHHh-----cCCeEEEEeCC-------------CCcccccHHHHHHHHHHHHH
Confidence 67888999999999999998776 7777774 44566666655 34555668899999999999
Q ss_pred cccccccc-CCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccc-cce-ecccCCCccccCCCCCcccccCC
Q psy7266 364 FEIDFDYF-GRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLA-DRF-VEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 364 lgi~~D~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~-d~~-V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
|||.+|.. ++.+ ++.+..++++.+|.++|++|.. ||...+---. ... -.|.-|. | -. .|..
T Consensus 87 lGl~~d~~~~~qS--~r~~~y~~~~~~Li~~G~aY~C-----~ct~eel~~~r~~~~~~~~~~~--Y----~~---~cr~ 150 (490)
T 4g6z_A 87 LGLDYDEGPYYQM--QRMDRYREVLAQMQEKGLVYPC-----YMSTEELDALRERQRAAGEKPR--Y----DG---TWRP 150 (490)
T ss_dssp TTCCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEEE-----CC-------------------C--C----CC---TTCC
T ss_pred cCCCCCCCCcccc--cCHHHHHHHHHHHHHCCCEEeC-----CCCHHHHHHHHHHHHhcCCCCC--C----Cc---cccc
Confidence 99999963 3444 4889999999999999999964 4544321100 000 0010000 0 00 1111
Q ss_pred ccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCccc
Q psy7266 441 LINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPV 520 (1175)
Q Consensus 441 ~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~pi 520 (1175)
.... + . .-..-|.+..+| |+++. .....|.+..+..+ .+-...+.|+.|-|.-. .
T Consensus 151 ~~~~-~-~--~~~~~g~~~~~R------~k~~~----------~~~~~~~D~i~G~~-~~~~~~~~D~Vl~R~DG----~ 205 (490)
T 4g6z_A 151 EPGK-V-L--PEPPAGVAPVLR------FRNPL----------TGTVAWDDAVKGRV-EISNEELDDLVVARPDG----T 205 (490)
T ss_dssp CTTC-C-C--CCCCTTCCCEEE------ECCCC----------SSEEEEEETTTEEE-EEEGGGCCCCEEECTTS----C
T ss_pred CChh-h-h--hhhhcCCCceEE------EecCC----------CCcEEEEEeeeeee-eeccccCCCeEEEeeCC----C
Confidence 1000 0 0 000012222222 11110 00000111100000 00013467888887532 2
Q ss_pred CCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-eccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCCccc
Q psy7266 521 PLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFS 599 (1175)
Q Consensus 521 P~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~KMS 599 (1175)
|.+.+-. ..| +....+.|++ |.|++.. +-....+..++ +++.|....+.-.++.+|.|||
T Consensus 206 ptY~lA~--------------vVD--D~~mgIThViRG~D~l~~-tprq~~l~~aL--G~~~P~f~HlpLi~~~~g~KLS 266 (490)
T 4g6z_A 206 PMYNFCV--------------VVD--DLDMGITHVIRGDDHVNN-TPRQINILRAL--GGEVPVYAHLPTVLNEQGEKMS 266 (490)
T ss_dssp BCHHHHH--------------HHH--HHHTTCCEEEEEGGGGGG-HHHHHHHHHHT--TCCCCEEEEECCEECTTSSBCC
T ss_pred ccchhHH--------------HHH--HHhcCCCEEEeccccccC-hHHHHHHHHHc--CCCCCeEEEecceeCCCCCccc
Confidence 4321000 001 0111223555 9998742 11111233444 4667754433333468899999
Q ss_pred ccCCCccCchhhhhcCCCchhHHHHHHhcCCC-CCCccccHHHHHH
Q psy7266 600 KSRGTGVFGNNAKDTGLPADIFRFYLLYVRPE-NQDTSFSWQDLAT 644 (1175)
Q Consensus 600 KS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~-~~D~~f~~~~~~~ 644 (1175)
|+.|. ++..++.+.||.+++++-||+..+.. +..--|+.+++.+
T Consensus 267 KR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~ 311 (490)
T 4g6z_A 267 KRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVE 311 (490)
T ss_dssp TTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHH
T ss_pred CCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHHh
Confidence 99985 78899999999999999999986532 2334578877653
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=153.37 Aligned_cols=273 Identities=13% Similarity=0.174 Sum_probs=152.6
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++..+|.|||+|||||++++++ +..+||- +...|+.-+|| +++.....++.+.|.++++|
T Consensus 2 v~~RFaPsPtG~LHiG~~rtal~-n~l~Ar~-----~~G~filRieD-------------tD~~R~~~~~~~~I~~dl~w 62 (468)
T 1j09_A 2 VVTRIAPSPTGDPHVGTAYIALF-NYAWARR-----NGGRFIVRIED-------------TDRARYVPGAEERILAALKW 62 (468)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHH-HHHHHHH-----TTCEEEECBCC-------------CCTTSCCTTHHHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHHH-HHHHHHH-----cCCEEEEEeCc-------------CCCcccChHHHHHHHHHHHH
Confidence 46778899999999999998887 8888874 23345555555 45556677889999999999
Q ss_pred ccccccccC-------CCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCccccc-c----eecccCCCccccCCC
Q psy7266 364 FEIDFDYFG-------RTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLAD-R----FVEGVCPKCRYEDAR 431 (1175)
Q Consensus 364 lgi~~D~~~-------~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d-~----~V~g~cP~c~~~d~~ 431 (1175)
||+.+|.-. -....++.+..+++..+|.++|++|.. ||... -|.. + -..|+|
T Consensus 63 lGl~wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c-----~ct~~--el~~~r~~~~~y~~~c--------- 126 (468)
T 1j09_A 63 LGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRA-----FETPE--ELEQIRKEKGGYDGRA--------- 126 (468)
T ss_dssp TTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEE-----CCCHH--HHHHHHHHHSSCCCGG---------
T ss_pred cCCCCCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEc-----CCCHH--HHHHHHHHcCCCCCcc---------
Confidence 999999742 122335899999999999999999964 33331 1110 0 001111
Q ss_pred CCcccccCCccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeee
Q psy7266 432 GDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCIT 511 (1175)
Q Consensus 432 G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~IS 511 (1175)
..+. ..+.. .....|.+..+| |+++. .....|.+..+..+ .+-...+.|+.|-
T Consensus 127 -------r~l~-~~e~~--~~~~~g~~~~~R------~k~~~----------~~~~~~~D~~~G~~-~~~~~~~~D~Vl~ 179 (468)
T 1j09_A 127 -------RNIP-PEEAE--ERARRGEPHVIR------LKVPR----------PGTTEVKDELRGVV-VYDNQEIPDVVLL 179 (468)
T ss_dssp -------GGSC-HHHHH--HHHHTTCCCEEE------ECCCS----------SCEEEEEETTTEEE-EEEGGGSCCCEEE
T ss_pred -------cCCC-HHHHH--HHHhcCCCceEE------EecCC----------CCceEEEeccceeE-eecccCCCCeEEE
Confidence 1100 00000 000011122222 11110 00000100000000 0000246788887
Q ss_pred ccCCCCcccCCCCCCCceEEecCccccccCCCCCCCCcceEEEEe-eccccchhHhHHHHHHHHhCCCcccCeEEEeece
Q psy7266 512 RDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFM-AKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEY 590 (1175)
Q Consensus 512 R~~~WG~piP~~~~e~~vvWfds~~~~~~wp~~~~~~~v~~~~~~-GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~ 590 (1175)
|.- | .|.++...- .|| ....+.|++ |.|++.. +.....+..++| ++.|.. .++++
T Consensus 180 R~d--g--~PtY~~a~v--------------vDD--~~~githvirG~D~~~~-t~~q~~l~~alg--~~~p~~-~h~~l 235 (468)
T 1j09_A 180 KSD--G--YPTYHLANV--------------VDD--HLMGVTDVIRAEEWLVS-TPIHVLLYRAFG--WEAPRF-YHMPL 235 (468)
T ss_dssp CTT--S--CBCHHHHHH--------------HHH--HHTTCCEEEEEGGGGGG-HHHHHHHHHHHT--CCCCEE-EEECC
T ss_pred ecC--C--CeeehhHHH--------------HHH--HHCCCCeEEEChhhhhh-HHHHHHHHHHcC--CCCCeE-EEeee
Confidence 753 2 333210000 000 111123444 9998753 222334445555 555643 44556
Q ss_pred e-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCC-CC-ccccHHHHH
Q psy7266 591 L-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPEN-QD-TSFSWQDLA 643 (1175)
Q Consensus 591 l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~-~D-~~f~~~~~~ 643 (1175)
+ +.+|.|||||.|+. ...++.+.||.++++|.||+..+... .+ ..|+.+.+.
T Consensus 236 i~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~el~ 290 (468)
T 1j09_A 236 LRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFI 290 (468)
T ss_dssp CBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHH
T ss_pred eeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHHHH
Confidence 4 78999999999998 78999999999999999999865422 22 467776654
|
| >1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-12 Score=107.55 Aligned_cols=53 Identities=30% Similarity=0.386 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhccccccCC
Q psy7266 1034 EELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATD 1086 (1175)
Q Consensus 1034 ~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~~~~~~~ 1086 (1175)
.+|..+|++||+.||+||++++++.+|+++|..||.||.+|+.+||++|+|+.
T Consensus 3 ~~l~~~v~~qG~~VR~LKa~kA~k~~i~~aV~~Ll~lK~~~~~~tg~~~~p~~ 55 (57)
T 1fyj_A 3 LVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYKPGN 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSCCSCSSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 57899999999999999999999999999999999999999999999999864
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-11 Score=135.63 Aligned_cols=95 Identities=14% Similarity=0.204 Sum_probs=77.2
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+++..+|.|||+|||||++++++ +|...+++++.|+.-+||. ++.....++.+.|.++|+|
T Consensus 6 v~~RFAPsPtG~LHiG~~rtal~------n~l~Ar~~~g~~ilRieDt-------------D~~R~~~~~~~~I~~dL~~ 66 (298)
T 1nzj_A 6 YIGRFAPSPSGELHFGSLIAALG------SYLQARARQGRWLVRIEDI-------------DPPREVPGAAETILRQLEH 66 (298)
T ss_dssp CEEEECCCTTSCCCHHHHHHHHH------HHHHHHHTTCEEEEEECCS-------------CGGGSCTTHHHHHHHHHHH
T ss_pred eEEEECcCCCCCccHHHHHHHHH------HHHHHHhcCCeEEEEEecC-------------CchhhHHHHHHHHHHHHHH
Confidence 67889999999999999998775 5555566778888888774 3444557889999999999
Q ss_pred ccccccc-cCCCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDY-FGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|||.+|. ..+.+ ++.+..++++.+|.++|++|..
T Consensus 67 LGl~~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 67 YGLHWDGDVLWQS--QRHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp TTCCCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCcccC
Confidence 9999996 33444 3789999999999999999963
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-10 Score=137.37 Aligned_cols=98 Identities=12% Similarity=0.153 Sum_probs=76.6
Q ss_pred EEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q psy7266 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYE 362 (1175)
Q Consensus 283 ~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~ 362 (1175)
-|.|..+|.|||+|||||++++++ +..+||- ..|. |+.-+| ++++.....++.+.|.++|+
T Consensus 24 ~vrtRFAPsPtG~LHiG~artAl~-n~~~Ar~--~~G~---fiLRie-------------DtD~~R~~~~~~~~I~~~L~ 84 (512)
T 4gri_A 24 STRVRYAPSPTGLQHIGGIRTALF-NYFFAKS--CGGK---FLLRIE-------------DTDQSRYSPEAENDLYSSLK 84 (512)
T ss_dssp CCEEEECCCSSSCCBHHHHHHHHH-HHHHHHH--TTCE---EEECBC-------------CCCTTSCCHHHHHHHHHHHH
T ss_pred ceeEEeCcCCCCcccHHHHHHHHH-HHHHHHH--cCCE---EEEEeC-------------cCCCCcCCHHHHHHHHHHHH
Confidence 367888999999999999998887 8888874 3343 444444 46777777899999999999
Q ss_pred hccccccccCC-------CCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 363 WFEIDFDYFGR-------TSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 363 ~lgi~~D~~~~-------T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||||.+|.-.. ....++.+.-+++..+|+++|++|..
T Consensus 85 wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 85 WLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp HHTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc
Confidence 99999985211 12335778888999999999999964
|
| >2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=107.35 Aligned_cols=66 Identities=38% Similarity=0.514 Sum_probs=56.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCC
Q psy7266 1098 DNSADVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTNNTKPNHSS 1164 (1175)
Q Consensus 1098 ~~~~e~~~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~~~~~~~~~ 1164 (1175)
+...+..+|..+|++||+.||.||+++ +++++|+++|++||+||++|+.+||++|.+...+|++++
T Consensus 10 ~~~~~~~~l~~~V~~QG~~VR~LKa~k-A~k~~i~~aV~~Ll~LKa~l~~~tg~~~~~p~~~~~~~~ 75 (79)
T 2djv_A 10 AKPQQIQALMDEVTKQGNIVRELKAQK-ADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKKSG 75 (79)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHHTCCTTSSSCSSSCCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcc-CcHhHhhHHHHHHHHHHHHHHHhcCCCCCCCCccccccC
Confidence 345567889999999999999999987 899999999999999999999999999988743344433
|
| >1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=100.97 Aligned_cols=52 Identities=33% Similarity=0.354 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCC
Q psy7266 1104 KALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTN 1156 (1175)
Q Consensus 1104 ~~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~ 1156 (1175)
.+|..+|++||+.||.||+++ +++.+|+++|++||.||.+|+.+||+||.|+
T Consensus 3 ~~l~~~v~~qG~~VR~LKa~k-A~k~~i~~aV~~Ll~lK~~~~~~tg~~~~p~ 54 (57)
T 1fyj_A 3 LVLYNRVAVQGDVVRELKAKK-APKEDVDAAVKQLLSLKAEYKEKTGQEYKPG 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHHSCCSCSS
T ss_pred HHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 578999999999999999997 8999999999999999999999999999985
|
| >1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.6e-12 Score=102.65 Aligned_cols=51 Identities=33% Similarity=0.346 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCCC
Q psy7266 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTNN 1157 (1175)
Q Consensus 1106 ~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~~ 1157 (1175)
|..+|++||+.||.||+++ ++|++|+++|++||.||++|+.+||++|.|++
T Consensus 2 L~~~V~~QG~~VR~LKa~k-A~k~~i~~aV~~Ll~LK~~~~~~tg~~~~p~~ 52 (59)
T 1d2d_A 2 VYDKIAAQGEVVRKLKAEK-APKAKVTEAVECLLSLKAEYKEKTGKEYVPGL 52 (59)
T ss_dssp CCHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHCSSSSSSCCCSS
T ss_pred hHHHHHHhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 3578999999999999998 89999999999999999999999999998854
|
| >1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-12 Score=106.20 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=48.0
Q ss_pred HHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhccccccCC
Q psy7266 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATD 1086 (1175)
Q Consensus 1036 l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~~~~~~~ 1086 (1175)
|..+|++||+.||+||++++++++|+++|++||.||++|+++||++|+|+.
T Consensus 2 L~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LK~~~~~~tg~~~~p~~ 52 (59)
T 1d2d_A 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTGKEYVPGL 52 (59)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCSSSSSSCCCSS
T ss_pred hHHHHHHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 457899999999999999999999999999999999999999999998853
|
| >2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-10 Score=101.83 Aligned_cols=55 Identities=36% Similarity=0.523 Sum_probs=51.8
Q ss_pred cCHHHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhccccccC
Q psy7266 1031 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAAT 1085 (1175)
Q Consensus 1031 ~~~~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~~~~~~ 1085 (1175)
.+..+|..+|++||+.||+||+.++++.+|+++|..||.||++|+.+||++|.++
T Consensus 13 ~~~~~l~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LKa~l~~~tg~~~~~p 67 (79)
T 2djv_A 13 QQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAP 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcHhHhhHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4567899999999999999999999999999999999999999999999999875
|
| >2hqt_A GU4 nucleic-binding protein 1; GST-fold, biosynthetic protein, RNA binding; 1.90A {Saccharomyces cerevisiae} SCOP: a.45.1.2 PDB: 2hrk_B 2hsm_B 2hsn_B | Back alignment and structure |
|---|
Probab=98.85 E-value=4.5e-10 Score=108.22 Aligned_cols=84 Identities=20% Similarity=0.438 Sum_probs=66.0
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc-CCcccCCC-CCccchhHHHHHHHHhh
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLIENS-TTVADICIWTCVYPLLS 142 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~-~~fLvG~~-lTlADi~l~~~L~~~~~ 142 (1175)
..+.++.+++++++|+.|..+... .+.|..||++|. ++||+|++ +|+|||++|+.+..+..
T Consensus 19 ~~~~~~~e~a~V~qWl~fa~~~~~-----------------~~~L~~Ld~~La~r~yL~G~~~~TiADiai~~~l~~~~~ 81 (124)
T 2hqt_A 19 PVSFTKEQSAQAAQWESVLKSGQI-----------------QPHLDQLNLVLRDNTFIVSTLYPTSTDVHVFEVALPLIK 81 (124)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTTCT-----------------GGGHHHHHHHHHHCSSTTSCSSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCccH-----------------HHHHHHHHHHHccCCcccCCCCCCHHHHHHHHHHHHHHH
Confidence 346788899999999999986321 566999999999 99999999 99999999999875421
Q ss_pred CCCC-----CCCcccchhHHHHHHHHhc
Q psy7266 143 DSKV-----RPLLSSYTNITPWYDRISK 165 (1175)
Q Consensus 143 ~~~~-----~~~~~~~p~L~~W~~rl~~ 165 (1175)
.... ......||||.||+++|.+
T Consensus 82 ~~~~~d~~~~~~~~~ypnv~RW~~~i~~ 109 (124)
T 2hqt_A 82 DLVASSKDVKSTYTTYRHILRWIDYMQN 109 (124)
T ss_dssp HHHHTCSSHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhhhhhccccccccCHHHHHHHHHHHH
Confidence 1110 1234679999999999875
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=98.41 E-value=8.2e-08 Score=113.33 Aligned_cols=60 Identities=33% Similarity=0.357 Sum_probs=52.0
Q ss_pred ccCHHHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhccccccCCCCC
Q psy7266 1030 FSSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDANQ 1089 (1175)
Q Consensus 1030 ~~~~~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~~~~~~~~~~ 1089 (1175)
+.+..+|+++|++||++||+||+.||+|++|+++|++||.||++||+.||++|+|++.|+
T Consensus 6 ~~~~~~~~~~i~~qg~~vr~lk~~~a~k~~i~~~v~~Ll~lk~~~k~~tg~~~~~~~~p~ 65 (477)
T 1r6t_A 6 PASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKADCPPG 65 (477)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC-----
T ss_pred ccchHHHHHHHHHhHHHHHhcccccccchhhHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 356689999999999999999999999999999999999999999999999998876543
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=98.25 E-value=6.8e-07 Score=105.53 Aligned_cols=57 Identities=30% Similarity=0.359 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCCC
Q psy7266 1100 SADVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTNN 1157 (1175)
Q Consensus 1100 ~~e~~~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~~ 1157 (1175)
+.+..+|.++|++||++||+||+.+ ++|++++++|++||+||++||++||++|.|+.
T Consensus 6 ~~~~~~~~~~i~~qg~~vr~lk~~~-a~k~~i~~~v~~Ll~lk~~~k~~tg~~~~~~~ 62 (477)
T 1r6t_A 6 PASLLELFNSIATQGELVRSLKAGN-ASKDEIDSAVKMLVSLKMSYKAAAGEDYKADC 62 (477)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHSSSCCCC--
T ss_pred ccchHHHHHHHHHhHHHHHhccccc-ccchhhHHHHHHHHHHHHHHHHhccccccccc
Confidence 4566789999999999999999987 89999999999999999999999999998754
|
| >1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-05 Score=67.06 Aligned_cols=62 Identities=37% Similarity=0.431 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCCCCC---CCCCCCCCc
Q psy7266 1100 SADVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTNNTK---PNHSSKNSS 1168 (1175)
Q Consensus 1100 ~~e~~~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~~~~---~~~~~~~~~ 1168 (1175)
..+-..|...|..||+.||.||+.+ +++..|+++|.+|+.||+++ |.+ +.+.| |+|||++..
T Consensus 8 ~~~~~~i~~~i~~qg~lvR~LK~~k-~~~~~I~eev~kl~~~ka~l----~~~--~~k~kf~LKTPKGT~~~ 72 (73)
T 1x59_A 8 MAERAALEELVKLQGERVRGLKQQK-ASAELIEEEVAKLLKLKAQL----GPD--ESKQKFVLKTPKSGPSS 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHH----CCC--CCSCCCCCCSTTCCCCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhhc----Ccc--ccccceeeeCCCCCCCC
Confidence 3445678999999999999999998 79999999999999999999 322 45566 999999864
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.8e-05 Score=86.00 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=45.9
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcC
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVR 629 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~ 629 (1175)
+.+.|.|+.+. ..+ +.-++-.++...| ..+++.+| ..+|+|||||.||.|++.| ++|.+|..+.+.-
T Consensus 173 ~v~~G~DQ~~~-~~l--~rdla~~~~~~~p-~~l~~pll~~l~G~KMSKS~~n~I~l~d------~p~~i~~Ki~~a~ 240 (323)
T 2cyb_A 173 LAVGGIDQRKI-HML--ARENLPRLGYSSP-VCLHTPILVGLDGQKMSSSKGNYISVRD------PPEEVERKIRKAY 240 (323)
T ss_dssp EEEEEGGGHHH-HHH--HHHHGGGGTCCCC-EEEEECCCBCTTSSBCCTTTTCSCBTTC------CHHHHHHHHHTSC
T ss_pred EEEechhhHHH-HHH--HHHHHHhcCCCCc-eEEecCcccCCCCCcccCCcCceeCCCC------CHHHHHHHHHhcC
Confidence 67889999763 322 2222222233333 35556777 6889999999999999886 3789999998753
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.4e-05 Score=89.97 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=43.4
Q ss_pred EEEeeccccchhHh---HHHHHHHHhCCCcccCeEEEe--ecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHH
Q psy7266 553 YQFMAKDNVPFHSI---MFPATLVAAGDQYTKVNHIMA--TEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLL 626 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~---~~pa~l~~~~~~~~~p~~i~~--~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll 626 (1175)
+..+|.|+.+.+.. +-+-+-...|...+.|..++. +.+| ..+|+|||||.+|.|+..| +++.++=.+.
T Consensus 142 ~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d------~p~~i~~KI~ 215 (322)
T 3tzl_A 142 IVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS------SEKTLKKQIS 215 (322)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC------CHHHHHHHHH
T ss_pred EEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC------CHHHHHHHHH
Confidence 77889999765433 111111111223456666663 4555 5799999999999998875 3556666666
Q ss_pred hc
Q psy7266 627 YV 628 (1175)
Q Consensus 627 ~~ 628 (1175)
+.
T Consensus 216 ~a 217 (322)
T 3tzl_A 216 SI 217 (322)
T ss_dssp TC
T ss_pred hc
Confidence 53
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00051 Score=77.83 Aligned_cols=70 Identities=14% Similarity=0.072 Sum_probs=43.8
Q ss_pred EEEeeccccchhHh---HHHHHHHHhCCCcccCeEEEe-ecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSI---MFPATLVAAGDQYTKVNHIMA-TEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~---~~pa~l~~~~~~~~~p~~i~~-~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
+.++|.|+.+...+ +.+.+-...|.-.+.|..++. +.+| ..+|.|||||.||.|++.| +++.++=.+.+
T Consensus 156 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~~ 229 (340)
T 2g36_A 156 GVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTILR 229 (340)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHHT
T ss_pred EEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHHh
Confidence 77899999764332 111111111211345666665 3455 4789999999999998876 46677766666
Q ss_pred c
Q psy7266 628 V 628 (1175)
Q Consensus 628 ~ 628 (1175)
.
T Consensus 230 a 230 (340)
T 2g36_A 230 M 230 (340)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00019 Score=63.28 Aligned_cols=66 Identities=9% Similarity=-0.025 Sum_probs=56.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHHHcC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLYLSK 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p 67 (1175)
+++|+.+.||+|++++.++...|++|+.+.++.... ..++.+.+|++. .||..+.++.+|++|+..
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~-~~g~~i~g~~~i~~~~~~ 74 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF-IDAQHIGGYDDLYALDAR 74 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE-ETTEEEESHHHHHHHHHT
T ss_pred EEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE-ECCEEEeCHHHHHHHHHC
Confidence 478999999999999999999999999988875321 145888999995 688999999999999864
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00037 Score=62.32 Aligned_cols=65 Identities=12% Similarity=-0.034 Sum_probs=55.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCC-----CcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLS-----KTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~-----g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+.+.||+|++++.+|...|++|+.+.++.... ..++. .+||++. .||..|.++..|.+|+.
T Consensus 6 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~-i~g~~i~g~~~i~~~~~ 83 (89)
T 3msz_A 6 VKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIF-IDDEHIGGFTELKANAD 83 (89)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEE-ETTEEEESHHHHHHTHH
T ss_pred EEEEEcCCChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEE-ECCEEEeChHHHHHHHH
Confidence 468999999999999999999999999998887543 13455 8999995 68999999999999874
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00038 Score=78.54 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=39.6
Q ss_pred CCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhcccccc
Q psy7266 292 VNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFD 369 (1175)
Q Consensus 292 ~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D 369 (1175)
|||.|||||..+.+. . +.+++ .|+++++..| |.|+.-. ..++. ..+++...+..+|..+|++++
T Consensus 10 PTG~lHlGn~vg~l~-~--~~~lQ--~g~~~~~~Ia-D~ha~~~-------~~~~e-~i~~~~~~~~~~~la~Gldp~ 73 (328)
T 1i6k_A 10 PSGVITIGNYIGALR-Q--FVELQ--HEYNCYFCIV-DQHAITV-------WQDPH-ELRQNIRRLAALYLAVGIDPT 73 (328)
T ss_dssp CCSCCBHHHHHHTHH-H--HHHHT--TTSEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCcccHHHHHHHHH-H--HHHHH--cCCcEEEEEe-CceeecC-------CCCHH-HHHHHHHHHHHHHHHhCCChh
Confidence 679999999997553 1 11222 2888765544 4444311 02443 445555677788889999887
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00026 Score=81.96 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=30.5
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecC-CCcccccCCCc-cCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYE-DGKFSKSRGTG-VFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~-G~KMSKS~GN~-v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
+.+.|.|+...... +.-..-.+++..|..+. +.+| ..+ |+|||||.||. |++.|= ++.+|=.+.+
T Consensus 185 ~v~~G~DQ~~~~~l---~rdl~~r~~~~~p~~l~-~pll~gl~~G~KMSKS~~ns~I~L~D~------p~~i~kKI~k 252 (394)
T 2dlc_X 185 CQFGGVDQRKIFVL---AEENLPSLGYKKRAHLM-NPMVPGLAQGGKMSASDPNSKIDLLEE------PKQVKKKINS 252 (394)
T ss_dssp EEEEEGGGHHHHHH---HHHHGGGGTCCCCEEEE-ECCCCCCC----------CCSCBTTCC------HHHHHHHHHH
T ss_pred EEecCccHHHHHHH---HHHHHHHcCCCCCEEEe-cccccCCCCCCcCCCCCCCCEEeccCC------HHHHHHHHHH
Confidence 67889999764322 11222222344444444 5565 577 99999999996 887652 4455555554
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00097 Score=76.58 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=32.7
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCC-ccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGT-GVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN-~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
+.+.|.|+...... +.-.+-.+++..|..+ .+.+| ..+|+|||||.|| .|+..|= ++.+|=.+.+
T Consensus 181 ~v~~G~DQ~~~~~l---~rdl~~r~~~~~p~~l-~~pll~gldG~KMSKS~~ns~I~L~d~------p~~i~kKi~~ 247 (372)
T 1n3l_A 181 AQFGGIDQRKIFTF---AEKYLPALGYSKRVHL-MNPMVPGLTGSKMSSSEEESKIDLLDR------KEDVKKKLKK 247 (372)
T ss_dssp EEEEEGGGHHHHHH---HHHHGGGGTCCCCEEE-EECCCCCSSCC-------CCSCBTTCC------HHHHHHHHHT
T ss_pred EEEcChhHHHHHHH---HHHHHHHcCCCCCEEE-ecCccCCCCcccccCCCCCCeEeccCC------HHHHHHHHHH
Confidence 67889999764322 1111212234444444 45565 5789999999999 6887652 4556655555
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=75.07 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=41.8
Q ss_pred EEEeeccccchhHh---HHHHHHHHhCCCcccCeEEEe-ecee-ecCCC-cccccCCCccCchhhhhcCCCchhHHHHHH
Q psy7266 553 YQFMAKDNVPFHSI---MFPATLVAAGDQYTKVNHIMA-TEYL-NYEDG-KFSKSRGTGVFGNNAKDTGLPADIFRFYLL 626 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~---~~pa~l~~~~~~~~~p~~i~~-~g~l-~~~G~-KMSKS~GN~v~~~d~i~~~~gaDalR~~ll 626 (1175)
+.++|.|+.+...+ +...+-...|.-++.|..++. +.+| ..+|. |||||.||.|++.|= ++.++=.+.
T Consensus 165 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~------p~~i~~Ki~ 238 (351)
T 1yi8_B 165 LVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS------ADEVARKVM 238 (351)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC------HHHHHHHHH
T ss_pred EEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCCC------HHHHHHHHH
Confidence 77899999764332 111111112211455666664 4455 47897 999999999887652 455665555
Q ss_pred h
Q psy7266 627 Y 627 (1175)
Q Consensus 627 ~ 627 (1175)
+
T Consensus 239 ~ 239 (351)
T 1yi8_B 239 G 239 (351)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00047 Score=78.91 Aligned_cols=69 Identities=12% Similarity=0.002 Sum_probs=41.7
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
-|||.||||| ..++. .+.+++ ..|+++++..| |.|+.-. ...|.++. ..+++...+..+|..+|++.+.
T Consensus 43 ~PTg~lHlG~-l~~l~---~~~~lQ-~~G~~~~~~ia-D~~a~~~----~ps~~~~e-~i~~~~~~~~~~~la~G~dp~k 111 (364)
T 2cya_A 43 EPSGVAHIGW-LVWMY---KVKDLV-EAGVDFSVLEA-TWHAYIN----DKLGGDMD-LIRAAARIVRRVMEAAGVPVER 111 (364)
T ss_dssp CCCSSCBTHH-HHHHH---HHHHHH-HTTCEEEEEEC-HHHHHHT----TGGGGCHH-HHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCCccHhH-HHHHH---HHHHHH-HCCCCEEEEEe-CcchhhC----CCCCCCHH-HHHHHHHHHHHHHHHhCCCccc
Confidence 4689999999 65443 344444 45898877666 3333211 11123433 3444556677889999998874
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0012 Score=59.58 Aligned_cols=68 Identities=3% Similarity=-0.142 Sum_probs=56.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---c---cCCCCcccEEEeCCCcEEeCHHHHHHHHcCCC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---R---LLLSKTVPVLELDDGSQLFSANQSCLYLSKFD 69 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---~---~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p~~ 69 (1175)
+++|+.+.||+|++++.++...|++|+.+.++.... . .++..++|++. .+|..+.++.+|.+|+....
T Consensus 8 v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~-~~g~~i~g~~~i~~~~~~~~ 81 (92)
T 2khp_A 8 VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIF-IGSVHVGGCDDLYALEDEGK 81 (92)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE-ETTEEEESHHHHHHHHTTTC
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE-ECCEEEcCHHHHHHHHHcCC
Confidence 368999999999999999999999999988875421 1 45778999984 68899999999999987443
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0026 Score=57.56 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=51.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------cC-CCCcccEEEeCCCcEEeC--HHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------LL-LSKTVPVLELDDGSQLFS--ANQSCLYL 65 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~-P~g~vP~L~~~dG~~l~e--S~aI~~YL 65 (1175)
+++|+.+.||+|.+++-+|...|++|+.+.|+..... ++ ...+||+++..||.++.+ ...|.+.|
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L 79 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKL 79 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHH
T ss_pred EEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHH
Confidence 4799999999999999999999999999888765421 23 467899998889998876 34444443
|
| >3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00072 Score=76.33 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=41.1
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
-|||.|||||..+++- . +.+++. |+++.+..+ |.|..-. ..+| +..+++...+..+|..+|++.+.
T Consensus 14 ~PTG~lHLGhy~g~l~-~--~~~lQ~--~~~~~~~ia-D~ha~~~-------~~~~-~~~~~~~~~~~~~~lA~GlDp~k 79 (341)
T 3sz3_A 14 QPSGELSIGNYLGALR-Q--WQQMQD--DYDCQYCVV-DLHAITV-------RQDP-QALHEATLDALAICLAVGVDPKK 79 (341)
T ss_dssp CSSSCCBHHHHHHTGG-G--HHHHHH--HSEEEEEEC-HHHHTTS-------CCCH-HHHHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCCcccHHHHHHHHH-H--HHHHHh--cCeEEEEEe-cceeEcC-------CCCH-HHHHHHHHHHHHHHHHcCCChhh
Confidence 3789999999997542 2 234444 577655443 5554321 1344 34455555677788889998874
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=59.01 Aligned_cols=65 Identities=8% Similarity=-0.110 Sum_probs=54.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--c---ccC-CCCcccEEEeCCCcEEeCHHHHHHHHcC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--A---RLL-LSKTVPVLELDDGSQLFSANQSCLYLSK 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--~---~~~-P~g~vP~L~~~dG~~l~eS~aI~~YL~p 67 (1175)
+++|+.+.||+|.+++.++...|++|+.+.++ .+ . ..+ +...+|++. .||..+.++.+|.+|+..
T Consensus 8 v~~y~~~~C~~C~~~~~~L~~~~i~~~~vdv~-~~~~~~l~~~~~~~~~vP~l~-~~g~~i~g~~~i~~~~~~ 78 (89)
T 2klx_A 8 IILYTRPNCPYCKRARDLLDKKGVKYTDIDAS-TSLRQEMVQRANGRNTFPQIF-IGDYHVGGCDDLYALENK 78 (89)
T ss_dssp EEEESCSCCTTTHHHHHHHHHHTCCEEEECSC-HHHHHHHHHHHHSSCCSCEEE-ETTEECCSHHHHHHHHHH
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECC-HHHHHHHHHHhCCCCCcCEEE-ECCEEEeChHHHHHHHHc
Confidence 36899999999999999999999999887776 21 1 134 788999995 689999999999999763
|
| >1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.004 Score=55.62 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=52.6
Q ss_pred CEEEecC----CCchHHHHHHHHHhcCCCcEEEEecC-----ccc---c---cCCCC-----cccEEEeCCCcEEeCHHH
Q psy7266 1 MKCLSNR----NNVQTLKLLITAEFSTTKLDVELVDV-----ADA---R---LLLSK-----TVPVLELDDGSQLFSANQ 60 (1175)
Q Consensus 1 m~Ly~~~----~sp~~~~v~ial~~~gi~~e~~~v~~-----~~~---~---~~P~g-----~vP~L~~~dG~~l~eS~a 60 (1175)
++||+.+ .||+|.+++.+|...|++|+.+.++. ... + ..+.. +||++..+||..|.+...
T Consensus 2 v~iY~~~~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~ 81 (87)
T 1aba_A 2 FKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQ 81 (87)
T ss_dssp EEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHH
T ss_pred EEEEEeCCCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHH
Confidence 4789999 99999999999999999999998883 211 1 23555 899996448999999998
Q ss_pred HHHHH
Q psy7266 61 SCLYL 65 (1175)
Q Consensus 61 I~~YL 65 (1175)
+..++
T Consensus 82 l~~~~ 86 (87)
T 1aba_A 82 LREYF 86 (87)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 87764
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0046 Score=55.61 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=45.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----------ccCCCCcccEEEeCCCcEEe
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----------RLLLSKTVPVLELDDGSQLF 56 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----------~~~P~g~vP~L~~~dG~~l~ 56 (1175)
++||+.+.||+|.+++.+|...|++|+.+.++..+. ..+|..++|+|+. ||..+.
T Consensus 14 v~ly~~~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~-~g~~i~ 79 (92)
T 3ic4_A 14 VLMYGLSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK-GDKHVL 79 (92)
T ss_dssp SEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE-TTEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE-CCEEEe
Confidence 479999999999999999999999999998885321 1457889999975 776664
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.006 Score=56.06 Aligned_cols=66 Identities=6% Similarity=0.031 Sum_probs=55.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------cC-CCCcccEEEeCCCcEEeCHHHHHHHHcC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------LL-LSKTVPVLELDDGSQLFSANQSCLYLSK 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~-P~g~vP~L~~~dG~~l~eS~aI~~YL~p 67 (1175)
++||+.+.||+|.+++.+|...|++|+.+.|+..... .. ...+||++ ..||..|.+...|..++..
T Consensus 18 v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i-fi~g~~igG~d~l~~~~~~ 90 (99)
T 3qmx_A 18 IEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQI-FIDDQHIGGCDDIYALDGA 90 (99)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE-EETTEEEESHHHHHHHHHT
T ss_pred EEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE-EECCEEEeChHHHHHHHHc
Confidence 4789999999999999999999999999888765421 33 67889999 5789999999999988753
|
| >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0052 Score=69.33 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHc-CCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhcccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLV-NRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFD 369 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~-G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D 369 (1175)
-|||.|||||..+.+- .+.+++ ++++.+.. .|.|..-. ..+| +..+++......+|..+|++.+
T Consensus 23 ~PTG~lHLGh~vg~l~------~~~~lQ~~~~~~~~i-aD~hA~t~-------~~~~-~~~~~~~~~~~~~~lA~GlDp~ 87 (346)
T 3n9i_A 23 QPSGELTIGNYMGALR------QWVQMQDDYDCIYCI-VDLHAITA-------RQDP-ALLRKRTLDTLALYLACGIDPK 87 (346)
T ss_dssp CSCSCCBHHHHHHTHH------HHHTTTTTSEEEEEE-CHHHHTTS-------CCCH-HHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCCcccHHHHHHHHH------HHHHHHhhCcEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHHHHHcCCCcc
Confidence 3779999999886432 332232 67765544 45554321 2344 3445555566778888999887
Q ss_pred c
Q psy7266 370 Y 370 (1175)
Q Consensus 370 ~ 370 (1175)
.
T Consensus 88 k 88 (346)
T 3n9i_A 88 K 88 (346)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0024 Score=54.87 Aligned_cols=43 Identities=37% Similarity=0.394 Sum_probs=40.3
Q ss_pred CHHHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHH
Q psy7266 1032 SVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQL 1074 (1175)
Q Consensus 1032 ~~~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~ 1074 (1175)
+...+.+.|..||+.||.||+.++++..|+++|.+|++||+++
T Consensus 10 ~~~~i~~~i~~qg~lvR~LK~~k~~~~~I~eev~kl~~~ka~l 52 (73)
T 1x59_A 10 ERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQL 52 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhc
Confidence 4567899999999999999999999999999999999999999
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0088 Score=55.22 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=46.0
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----------ccCCCCcccEEEeCCCcEEe
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----------RLLLSKTVPVLELDDGSQLF 56 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----------~~~P~g~vP~L~~~dG~~l~ 56 (1175)
|+||+.+.||+|.+++.+|...|++|+.+.++..+. ..++..+||+|..++|..+.
T Consensus 24 v~ly~~~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~ig 90 (103)
T 3nzn_A 24 VIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIV 90 (103)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEE
T ss_pred EEEEcCCCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEE
Confidence 579999999999999999999999999998886321 13688899999766657664
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0078 Score=64.85 Aligned_cols=64 Identities=9% Similarity=0.018 Sum_probs=54.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
++||+.+.||+|.+++.+|...|++|+.+.++.... ...+..+||+|. .+|..|.++..|++||
T Consensus 172 i~ly~~~~Cp~C~~a~~~L~~~~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~-~~g~~i~g~~~i~~~l 240 (241)
T 1nm3_A 172 ISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVSVRAVSGRTTVPQVF-IGGKHIGGSDDLEKYF 240 (241)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEETTTTCCHHHHHHHTCCSSSCEEE-ETTEEEESHHHHHHC-
T ss_pred EEEEECCCChHHHHHHHHHHHcCCceEEEECCCchHHHHHHHHhCCCCcCEEE-ECCEEEECHHHHHHHh
Confidence 478999999999999999999999999988875432 135677899995 7889999999999997
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.022 Score=48.65 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=44.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--c---cCCCCcccEEEeCCCcEEe
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--R---LLLSKTVPVLELDDGSQLF 56 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--~---~~P~g~vP~L~~~dG~~l~ 56 (1175)
+++|+.+.||+|.+++.++...|++|+.+.++.... . .++.+.+|+|+ .||..+.
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~-~~g~~~~ 62 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALGYVQAPVVE-VDGEHWS 62 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHTTCBCCCEEE-ETTEEEE
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCccCEEE-ECCeEEc
Confidence 368999999999999999999999999988875431 1 46788999997 5776554
|
| >1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.056 Score=48.69 Aligned_cols=65 Identities=8% Similarity=-0.031 Sum_probs=52.7
Q ss_pred CEEEecCCCchH------HHHHHHHHhcCCCcEEEEecCcccc------c--CCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQT------LKLLITAEFSTTKLDVELVDVADAR------L--LLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~------~~v~ial~~~gi~~e~~~v~~~~~~------~--~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+.+.||++ .+++-+|...|++|+.+.++..... . .|..+||++ ..||..|.+...+..+..
T Consensus 4 v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~i-fi~g~~igG~d~l~~l~~ 82 (93)
T 1t1v_A 4 LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQI-VNGNHYCGDYELFVEAVE 82 (93)
T ss_dssp EEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEE-EETTEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEE-EECCEEEeCHHHHHHHHh
Confidence 478999999999 8999999999999999888754311 2 235599999 578889999888888765
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.057 Score=50.52 Aligned_cols=65 Identities=12% Similarity=-0.024 Sum_probs=53.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCc---ccc-------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVA---DAR-------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~---~~~-------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.+|+.+.||+|.+++-+|...|++|+.+.++.. +.. .....+||++ ..||..|.+...+.++..
T Consensus 21 v~vy~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i-fi~g~~igG~~~~~~~~~ 95 (113)
T 3rhb_A 21 VVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV-FVCGKHIGGCTDTVKLNR 95 (113)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE-EETTEEEESHHHHHHHHH
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE-EECCEEEcCcHHHHHHHH
Confidence 4689999999999999999999999999888763 111 2356789999 588999999988877653
|
| >3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.068 Score=50.22 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=52.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
+.+|+.+.||+|.+++-+|...|++|+.+.++.... ......+||++ ..||..|.+...+.++.
T Consensus 19 v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~v-fi~g~~igG~d~l~~l~ 91 (114)
T 3h8q_A 19 VVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNI-FVNKVHVGGCDQTFQAY 91 (114)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEE-EETTEEEESHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEE-EECCEEEeCHHHHHHHH
Confidence 468999999999999999999999999998886321 13466789999 47899999988777654
|
| >1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.13 Score=47.71 Aligned_cols=65 Identities=8% Similarity=-0.081 Sum_probs=51.1
Q ss_pred CEEEec-----CCCchHHHHHHHHHhcCCCcEEEEecCccc---c---cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSN-----RNNVQTLKLLITAEFSTTKLDVELVDVADA---R---LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~-----~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---~---~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.||+. +.||+|.+++-+|...|++|+.+.++.... . .....+||++ +.||..|.+...+..+..
T Consensus 17 vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i-fi~g~~igG~d~l~~l~~ 92 (109)
T 1wik_A 17 VMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQL-YVRGDLVGGLDIVKELKD 92 (109)
T ss_dssp EEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEE-ECSSSEEECHHHHHHHHH
T ss_pred EEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEE-EECCEEEcCHHHHHHHHH
Confidence 368988 999999999999999999999888875431 1 2245689998 588899999877666543
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.096 Score=50.44 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=53.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--c-------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--A-------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--~-------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.+|+.+.||+|.+++.+|...+++|+.+.++... . ...+...+|++. .||..|.++..|..+..
T Consensus 29 vvvf~~~~Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~-i~G~~igg~~~l~~~~~ 102 (130)
T 2cq9_A 29 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF-VNGTFIGGATDTHRLHK 102 (130)
T ss_dssp EEEEECSSCSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE-ETTEEEEEHHHHHHHHH
T ss_pred EEEEEcCCChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE-ECCEEEcChHHHHHHHH
Confidence 36899999999999999999999999998888651 1 123667899995 68899999888887754
|
| >2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.17 Score=47.31 Aligned_cols=65 Identities=3% Similarity=-0.043 Sum_probs=51.5
Q ss_pred CEEEecCCCchHH------HHHHHHHhcCCCcEEEEecCcccc------c--------CCCCcccEEEeCCCcEEeCHHH
Q psy7266 1 MKCLSNRNNVQTL------KLLITAEFSTTKLDVELVDVADAR------L--------LLSKTVPVLELDDGSQLFSANQ 60 (1175)
Q Consensus 1 m~Ly~~~~sp~~~------~v~ial~~~gi~~e~~~v~~~~~~------~--------~P~g~vP~L~~~dG~~l~eS~a 60 (1175)
++||+.+.||+|. +++-+|...|++|+.+.|+..... . ....+||++ +.||..|.+...
T Consensus 10 V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~v-fi~g~~iGG~d~ 88 (111)
T 2ct6_A 10 IRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQI-FNGDRYCGDYDS 88 (111)
T ss_dssp EEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEE-EETTEEEEEHHH
T ss_pred EEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEE-EECCEEEeCHHH
Confidence 3689999999999 899999999999999888764311 2 144579999 577888998888
Q ss_pred HHHHHc
Q psy7266 61 SCLYLS 66 (1175)
Q Consensus 61 I~~YL~ 66 (1175)
+.++..
T Consensus 89 l~~l~~ 94 (111)
T 2ct6_A 89 FFESKE 94 (111)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 777764
|
| >3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.12 Score=48.23 Aligned_cols=64 Identities=6% Similarity=-0.126 Sum_probs=51.7
Q ss_pred EEEec-----CCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 2 KCLSN-----RNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 2 ~Ly~~-----~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
.||+- +.||+|.+++-+|...|++|+.+.++..... .....+||++ ..||..|.+...+.++..
T Consensus 19 vlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~i-fi~g~~iGG~d~l~~l~~ 93 (111)
T 3zyw_A 19 MLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQL-YVSGELIGGLDIIKELEA 93 (111)
T ss_dssp EEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE-EETTEEEECHHHHHHHHH
T ss_pred EEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEE-EECCEEEecHHHHHHHHH
Confidence 57887 9999999999999999999998887654311 2346789999 588899999888877754
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.13 Score=46.99 Aligned_cols=65 Identities=11% Similarity=-0.061 Sum_probs=52.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCC---cEEEEecCcc------cc---cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTK---LDVELVDVAD------AR---LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~---~e~~~v~~~~------~~---~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.+|+.+.||+|.+++-++...+++ |+.+.++... .. ......+|++ ..+|..+.++..|..|..
T Consensus 14 v~~f~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i-~~~g~~i~g~~~~~~~~~ 90 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRV-FIGKECIGGCTDLESMHK 90 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE-EETTEEEESHHHHHHHHH
T ss_pred EEEEEcCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeE-EECCEEEeccHHHHHHHH
Confidence 3689999999999999999999999 8887777642 11 2356689999 478899999998888754
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.16 Score=50.06 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=54.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCc---cc------ccCCCCcccEEEeCCCcEEeCHHHHHHHHcCC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVA---DA------RLLLSKTVPVLELDDGSQLFSANQSCLYLSKF 68 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~---~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p~ 68 (1175)
+.+|+.+.||+|.+++.+|...+++|+.+.++.. .. ...+...+|++. .||..|.++..+..+....
T Consensus 51 Vvvf~~~~Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if-i~G~~igG~d~l~~l~~~g 126 (146)
T 2ht9_A 51 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF-VNGTFIGGATDTHRLHKEG 126 (146)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE-ETTEEEESHHHHHHHHHTT
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE-ECCEEEeCchHHHHHHHcC
Confidence 3689999999999999999999999999888765 11 123667899994 6899999998888876543
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.2 Score=46.08 Aligned_cols=65 Identities=8% Similarity=-0.096 Sum_probs=51.7
Q ss_pred CEEEec-----CCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSN-----RNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~-----~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.||+. +.||+|.+++-+|...|++|+.+.++..... ......+|++ ..||..|.+...+..+..
T Consensus 19 vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v-~i~g~~igg~d~~~~l~~ 94 (105)
T 2yan_A 19 VMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL-YVKGELVGGLDIVKELKE 94 (105)
T ss_dssp EEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE-EETTEEEECHHHHHHHHH
T ss_pred EEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE-EECCEEEeChHHHHHHHH
Confidence 357887 9999999999999999999998888754321 2345689999 578999999888887754
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=91.76 E-value=0.19 Score=58.11 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=43.1
Q ss_pred EEEeeccccchhHhHHHHHHHHh-CCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAA-GDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~-~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
+++.|.|+.+.... ---+..-. + .. +...+.+.+| ..+|+|||||.||.|+.+|-. .+++.++=++.+
T Consensus 188 i~~gG~DQ~~ni~l-grdlarr~~~--~~-~~~~lt~pll~~ldG~KMSKS~~naI~L~d~~---tsp~~i~qki~~ 257 (419)
T 2ts1_A 188 LQIGGSDQWGNITA-GLELIRKTKG--EA-RAFGLTIPLVTKADGTKFGKTESGTIWLDKEK---TSPYEFYQFWIN 257 (419)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHHC-----CCEEEEECCCCCTTSCCTTCCSSCCCBSSTTT---SCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhcC--CC-CeeecccccccCCCcccccCCCCCeEecCCCC---CCHHHHHHHHhc
Confidence 77889999654322 11122222 2 12 3445556666 579999999999999998742 456667666665
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.22 Score=57.80 Aligned_cols=68 Identities=16% Similarity=0.069 Sum_probs=43.6
Q ss_pred EEEeeccccchhHhHHHHHHHHh-CCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAA-GDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~-~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
+++.|.|+.+.... ---+..-. + .. +...+.+.+| ..+|+|||||.||.|+.+|-. .+++.++=++.+
T Consensus 189 i~~gG~DQ~~ni~~-grdla~r~~~--~~-~~~~l~~pll~~ldG~KMSKS~~naI~L~d~~---tsp~~i~~ki~~ 258 (420)
T 1jil_A 189 IQVGGSDQWGNITS-GIELMRRMYG--QT-DAYGLTIPLVTKSDGKKFGKSESGAVWLDAEK---TSPYEFYQFWIN 258 (420)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHHC--CC-CCEEEEECCCBCTTSCBTTBCSSSBCBSSTTT---SCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhcC--CC-CeeEeecccccCCccccccCCCCCeEecCCCC---CCHHHHHHHHhc
Confidence 77889999654322 11222222 2 22 3455556666 579999999999999998742 456667666665
|
| >3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.17 Score=48.73 Aligned_cols=65 Identities=12% Similarity=-0.055 Sum_probs=52.4
Q ss_pred CEEEecCCCchHHHH-HHHHHhcC---CCcEEEEecCccc------c---cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKL-LITAEFST---TKLDVELVDVADA------R---LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v-~ial~~~g---i~~e~~~v~~~~~------~---~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+++|+.+.||+|.++ +-+|...| ++|+.+.++.... . .....+||++ ..+|..|.+...+..+..
T Consensus 39 Vvvy~~~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v-fi~g~~igG~d~l~~l~~ 116 (129)
T 3ctg_A 39 VFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNV-YINGKHIGGNSDLETLKK 116 (129)
T ss_dssp EEEEECTTCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-EETTEEEESHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE-EECCEEEcCHHHHHHHHH
Confidence 468999999999999 99999999 9999888876531 1 2355689999 588899999888877654
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=91.29 E-value=0.17 Score=58.09 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=31.0
Q ss_pred eEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 583 NHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 583 ~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
...+.+.+| ..+|+|||||.||.|+.+|-. -+++.++=++.+
T Consensus 278 ~~~l~~pll~~ldG~KMSKS~~naI~L~d~~---tsp~~i~qki~~ 320 (392)
T 1y42_X 278 CVGFTVPLLTDSSGAKFGKSAGNAIWLDPYQ---TSVFDFYGYFVR 320 (392)
T ss_dssp CEEEECCCCBCTTCCBTTBCSSSBCBSSTTT---SCHHHHHHHHHT
T ss_pred ccccccccCcCCchhhccCCCCCeeeccCCC---CCHHHHHHHHHc
Confidence 455566676 589999999999999998742 456666666665
|
| >3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A | Back alignment and structure |
|---|
Probab=91.19 E-value=0.24 Score=46.04 Aligned_cols=64 Identities=6% Similarity=-0.129 Sum_probs=50.2
Q ss_pred EEEec-----CCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 2 KCLSN-----RNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 2 ~Ly~~-----~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
.||+. |.||+|.+++-+|...|++|+.+.|+-.... .....+||.+ +.||..|.+...+.++..
T Consensus 21 vvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i-fi~g~~iGG~d~l~~l~~ 95 (109)
T 3ipz_A 21 VLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQL-YIGGEFFGGCDITLEAFK 95 (109)
T ss_dssp EEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE-EETTEEEECHHHHHHHHH
T ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeE-EECCEEEeCHHHHHHHHH
Confidence 57776 4899999999999999999999887643311 2356789999 588899999888776643
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.18 Score=56.85 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=43.0
Q ss_pred EEEeeccccchhHh---HHHHHHHHhCCCcccCeEEEee--cee-ecCC-CcccccCCCccCchhhhhcCCCchhHHHHH
Q psy7266 553 YQFMAKDNVPFHSI---MFPATLVAAGDQYTKVNHIMAT--EYL-NYED-GKFSKSRGTGVFGNNAKDTGLPADIFRFYL 625 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~---~~pa~l~~~~~~~~~p~~i~~~--g~l-~~~G-~KMSKS~GN~v~~~d~i~~~~gaDalR~~l 625 (1175)
+.++|.|+.+...+ +...+-...|.-+..|..++.. .+| ..+| +|||||.||.|++.|= ++.++=++
T Consensus 144 lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~------p~~i~~Ki 217 (337)
T 2el7_A 144 TVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP------EESIWQKI 217 (337)
T ss_dssp EEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC------HHHHHHHH
T ss_pred EEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcCC------HHHHHHHH
Confidence 78899999864433 1111111123124556666553 355 5789 8999999999988762 55666666
Q ss_pred Hhc
Q psy7266 626 LYV 628 (1175)
Q Consensus 626 l~~ 628 (1175)
.+.
T Consensus 218 ~~a 220 (337)
T 2el7_A 218 QHL 220 (337)
T ss_dssp HTC
T ss_pred HhC
Confidence 654
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.21 Score=57.93 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=43.1
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCC-ccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGT-GVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN-~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
++++|.|+.+.... ---+..-.+ .. +...+.+.+| ..+|+|||||.|| .|+.+|- ..+++.++=++.+
T Consensus 190 i~~gG~DQ~~ni~l-grdlarr~~--~~-~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d~---~tsp~~i~qki~~ 259 (432)
T 2jan_A 190 LQIGGADQWGNIIA-GVRLVRQKL--GA-TVHALTVPLVTAADGTKFGKSTGGGSLWLDPQ---MTSPYAWYQYFVN 259 (432)
T ss_dssp EEEECSTTHHHHHH-HHHHHHHHH--CC-CCEEEECCCCBCTTSCBTTBCSSSCBCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhC--CC-CccccccccccCCCcCcCCCCCCCCeEEccCC---CCCHHHHHHHHhc
Confidence 78899999654322 111222222 22 3345555666 5799999999999 9999873 2566777666665
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=0.21 Score=47.14 Aligned_cols=65 Identities=12% Similarity=-0.032 Sum_probs=52.0
Q ss_pred CEEEecCCCchHHHH-HHHHHhcC---CCcEEEEecCccc------c---cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKL-LITAEFST---TKLDVELVDVADA------R---LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v-~ial~~~g---i~~e~~~v~~~~~------~---~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.+|+.+.||+|.++ .-+|...+ ++|+.+.++.... . .....+||++ +.+|..|.+...|..+..
T Consensus 27 Vvvf~~~~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v-fi~g~~igG~d~l~~l~~ 104 (118)
T 3c1r_A 27 IFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI-YINGKHIGGNDDLQELRE 104 (118)
T ss_dssp EEEEECSSCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-EETTEEEESHHHHHHHHH
T ss_pred EEEEEcCCCcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE-EECCEEEEcHHHHHHHHH
Confidence 368999999999999 99999999 8888888875431 1 2245689999 578999999988887754
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=90.91 E-value=0.29 Score=42.17 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=42.3
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---c--cCCCCcccEEEeCCCcEEe
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---R--LLLSKTVPVLELDDGSQLF 56 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---~--~~P~g~vP~L~~~dG~~l~ 56 (1175)
++|+.+.||+|.+++..+...|++|+.+.++.... . ..+...+|++. .||..+.
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~-~~g~~~~ 62 (81)
T 1h75_A 4 TIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVI-AGDLSWS 62 (81)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHTTCCSSCEEE-ETTEEEE
T ss_pred EEEcCCCChhHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHhCCCccCEEE-ECCEEEe
Confidence 68999999999999999999999999877764321 1 24667899995 5776554
|
| >2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A | Back alignment and structure |
|---|
Probab=90.87 E-value=0.24 Score=47.95 Aligned_cols=64 Identities=8% Similarity=-0.091 Sum_probs=49.4
Q ss_pred CEEEec-----CCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 1 MKCLSN-----RNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 1 m~Ly~~-----~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
++||+. +.||+|.+++-+|...|++|+.+.++..... .....+||++ +.||..|.+...+..+.
T Consensus 37 Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V-fI~G~~iGG~d~l~~l~ 111 (135)
T 2wci_A 37 ILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQL-WVDGELVGGCDIVIEMY 111 (135)
T ss_dssp EEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE-EETTEEEESHHHHHHHH
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEE-EECCEEEEChHHHHHHH
Confidence 368888 8999999999999999999998888643211 2245589999 57888888877665543
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.068 Score=64.39 Aligned_cols=58 Identities=31% Similarity=0.398 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCCCCC---CCCCCCC
Q psy7266 1102 DVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTNNTK---PNHSSKN 1166 (1175)
Q Consensus 1102 e~~~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~~~~---~~~~~~~ 1166 (1175)
+..+|.+.|..||+.||.||++| +++..++++|++|++||++.. -+ ..+.| ++|+|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~k-~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~l~~P~G~~ 74 (517)
T 4g85_A 14 ERAALEELVKLQGERVRGLKQQK-ASAELIEEEVAKLLKLKAQLG----PD--ESKQKFVLKTPKGTR 74 (517)
T ss_dssp -------------------------------------------------------CCCCCCCCCTTCC
T ss_pred cHHHHHHHHHHhhhhhccccccc-CCHHHHHHHHHHHHHhhhhcC----Cc--ccccceeeeCCCCCC
Confidence 44568888999999999999998 899999999999999999884 22 22334 8888887
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.41 Score=55.70 Aligned_cols=65 Identities=15% Similarity=0.054 Sum_probs=43.2
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCC-cccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDG-KFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~-KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
++++|.|+.+ |..+---+....+ .. |..++.+.+| ..+|. |||||.||.|+.+| +++.++=++.+
T Consensus 190 l~~gG~DQ~~-ni~l~rdlarr~~--~~-~~~~lt~pll~gldG~~KMSKS~~n~I~L~d------sp~~i~~Ki~~ 256 (432)
T 1h3f_A 190 VEMGGTDQRF-NLLVGREVQRAYG--QS-PQVCFLMPLLVGLDGREKMSKSLDNYIGLTE------PPEAMFKKLMR 256 (432)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHTT--CC-CCEEEEECCCBCTTSSSBCCGGGTCCCBTTS------CHHHHHHHHHT
T ss_pred EEEechHHHH-HHHHHHHHHHHhC--CC-CceEeecccccCCCCccccCcCCCCeeCCCC------CHHHHHHHHhC
Confidence 7899999964 4433222233332 22 4455666776 47896 99999999999887 46667766665
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=89.65 E-value=0.34 Score=54.93 Aligned_cols=68 Identities=13% Similarity=0.006 Sum_probs=32.8
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
+.++|.|+.+.... ---+..-.+ .. +...+.+.+| ..+|+|||||.||.|+..|-. .+++.++=++.+
T Consensus 213 i~p~G~DQ~~~i~l-~rdla~r~n--~~-~~~~l~~pll~~ldG~KMSKS~~naI~L~d~~---tsp~~i~~ki~~ 281 (356)
T 2pid_A 213 VQLGGSDQLGNIMS-GYEFINKLT--GE-DVFGITVPLITSTTGAKLGKSAGNAVWLNRDK---TSPFELYQFFVR 281 (356)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHS--SC-CCEEEEECCCC-------------CCBSSTTT---SCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhC--CC-CccccccccccCCCcccccCCCCCeeeccCCC---CCHHHHHHHHHc
Confidence 78899999754322 112222232 22 3344555666 578999999999999998842 567778777776
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=89.64 E-value=0.064 Score=66.40 Aligned_cols=47 Identities=32% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhc
Q psy7266 1033 VEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKS 1079 (1175)
Q Consensus 1033 ~~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~ 1079 (1175)
..++...|.+||+.||+||+++|++.+|+++|+.|..+|+.+..+..
T Consensus 10 l~~~~~~v~~~~~~vr~lk~~~a~~~~i~~av~~l~~~k~~~~~~~~ 56 (693)
T 2zt5_A 10 LAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKEL 56 (693)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567789999999999999999999999999999999999986553
|
| >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=0.18 Score=56.42 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=43.9
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
+.++|.|+.+.... ---+..-.+ .. +...+.+.+| ..+|+|||||.||.|+..| + ..+++.++=++.+
T Consensus 194 v~~gG~DQ~~~i~l-~rdla~r~n--~~-~~~~l~~pll~gldG~KMSKS~~n~I~L~d--~-~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 194 LCIGGSDQWGNITS-GIDLTRRLH--QN-QVFGLTVPLITKADGTKFGKTEGGAVWLDP--K-KTSPYKFYQFWIN 262 (322)
T ss_dssp EEEECTTCHHHHHH-HHHHHHHHH--CC-CCEEEECCCCBCTTSCBTTEETTEECBSST--T-TSCHHHHHHHHHT
T ss_pred EEecCchhHHHHHH-HHHHHHHhC--CC-CceeeccCccCCCCcccccCCCCCeeeccC--C-CCCHHHHHHHHhC
Confidence 77889999764332 111222222 22 2344455565 4689999999999999988 2 3677888777765
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=89.35 E-value=0.38 Score=44.90 Aligned_cols=65 Identities=9% Similarity=-0.100 Sum_probs=51.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCC---cEEEEecCcc------cc---cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTK---LDVELVDVAD------AR---LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~---~e~~~v~~~~------~~---~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.+|+.+.||+|.++.-++...+++ |+.+.++... .. ..+...+|++. .+|..+.+...+..+..
T Consensus 21 vv~f~~~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~-i~g~~igg~~~~~~~~~ 97 (114)
T 2hze_A 21 VTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIF-FGKTSIGGYSDLLEIDN 97 (114)
T ss_dssp EEEEECTTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE-ETTEEEESHHHHHHHHH
T ss_pred EEEEEeCCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEE-ECCEEEeCcHHHHHHHH
Confidence 3689999999999999999999999 8888887553 11 23567899995 58898988877766544
|
| >1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A | Back alignment and structure |
|---|
Probab=89.26 E-value=0.68 Score=43.75 Aligned_cols=63 Identities=6% Similarity=-0.021 Sum_probs=48.2
Q ss_pred CEEEecCCCchH------HHHHHHHHhcCCCcEEEEecCcccc-------cC-------CCCcccEEEeCCCcEEeCHHH
Q psy7266 1 MKCLSNRNNVQT------LKLLITAEFSTTKLDVELVDVADAR-------LL-------LSKTVPVLELDDGSQLFSANQ 60 (1175)
Q Consensus 1 m~Ly~~~~sp~~------~~v~ial~~~gi~~e~~~v~~~~~~-------~~-------P~g~vP~L~~~dG~~l~eS~a 60 (1175)
+++|+.+.||++ .++..+|...||+|+.+.|+..... .+ ....+|.+ +.||..|.+-..
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQI-Fi~~~~iGG~Dd 80 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQI-FNESQYRGDYDA 80 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEE-EETTEEEEEHHH
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEE-EECCEEEechHH
Confidence 479999999998 7999999999999999988765321 21 34579988 588888887554
Q ss_pred HHHH
Q psy7266 61 SCLY 64 (1175)
Q Consensus 61 I~~Y 64 (1175)
+...
T Consensus 81 ~~~l 84 (121)
T 1u6t_A 81 FFEA 84 (121)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=89.01 E-value=0.33 Score=42.20 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=45.1
Q ss_pred EEEecCCCchHHHHHHHHHh-----cCCCcEEEEecCcc---cc---cCC--CCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 2 KCLSNRNNVQTLKLLITAEF-----STTKLDVELVDVAD---AR---LLL--SKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~-----~gi~~e~~~v~~~~---~~---~~P--~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
.+|+.+.||+|.++.-++.. .+++|..+.++... .+ ... ...+|++ ..||..+.++..|..++.
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i-~~~g~~i~~~~~l~~~~~ 80 (85)
T 1ego_A 4 VIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI-FVDQQHIGGYTDFAAWVK 80 (85)
T ss_dssp EEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE-EETTEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE-EECCEEEECHHHHHHHHH
Confidence 57888999999999988887 56666554443221 11 123 5689999 468899998888877763
|
| >3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.91 E-value=0.38 Score=46.08 Aligned_cols=65 Identities=14% Similarity=0.011 Sum_probs=51.2
Q ss_pred CEEEecCCCchHHHHHHHHHhc---CCCcEEEEecCcc--cc-------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFS---TTKLDVELVDVAD--AR-------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~---gi~~e~~~v~~~~--~~-------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.||+.+.||+|.+++-+|... |++|+.+.++... .. .....+||.+ +.+|..|.+...+..+..
T Consensus 16 Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~I-fI~G~~IGG~ddl~~l~~ 92 (127)
T 3l4n_A 16 IIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNL-LVNGVSRGGNEEIKKLHT 92 (127)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-EETTEECCCHHHHHHHHH
T ss_pred EEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceE-EECCEEEcCHHHHHHHHH
Confidence 4689999999999999999984 7899998888642 11 2355689999 588898988887776644
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.01 E-value=0.63 Score=53.33 Aligned_cols=94 Identities=14% Similarity=0.026 Sum_probs=54.0
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREV 360 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~ 360 (1175)
+++.|.++. -|||.|||||..+..+ ..+++...|+++.+..| |.|+.-. ..+.++. ..+++......+
T Consensus 72 ~p~~i~sG~-~PTG~lHLGh~v~~~~----~~~lQ~~~g~~~~i~Ia-D~ha~~~-----~~~~~~e-~i~~~~~~~~~~ 139 (392)
T 3jxe_A 72 RGFFLYTGR-GPSGPMHIGHIIPFFA----TKWLQEKFGVNLYIQIT-DDEKFLF-----KENLTFD-DTKRWAYDNILD 139 (392)
T ss_dssp CCCEEEEEE-CCSSCCBHHHHHHHHH----HHHHHHHHCCEEEEEEC-HHHHHHH-----CSSCCHH-HHHHHHHHHHHH
T ss_pred CCeEEEecc-CCCCchhHHHHHHHHH----HHHHHHhcCCceEEEec-chHHhhc-----CCCCCHH-HHHHHHHHHHHH
Confidence 344555554 3679999999986432 22334436888887776 5443311 1124444 344455556677
Q ss_pred Hhhccccccc---cCCCCCHHHHHHHHHH
Q psy7266 361 YEWFEIDFDY---FGRTSTPQQTEIVQHL 386 (1175)
Q Consensus 361 ~~~lgi~~D~---~~~T~~~~~~~~v~~~ 386 (1175)
|..+|++.+. |..+.-+.|.+.++.+
T Consensus 140 ~lA~GlDp~kt~i~~qS~~~~~~~~~~~l 168 (392)
T 3jxe_A 140 IIAVGFDPDKTFIFQNSEFTKIYEMAIPI 168 (392)
T ss_dssp HHTTCCCTTSEEEEETTTSTHHHHHHHHH
T ss_pred HHHhCcCccceEEEECchhHHHHHHHHHH
Confidence 8888998774 2334444455555444
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=86.52 E-value=0.55 Score=53.10 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=43.6
Q ss_pred CCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc-
Q psy7266 292 VNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY- 370 (1175)
Q Consensus 292 ~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~- 370 (1175)
|||.|||||..+++. . +.+++. |+++++..| |-|++-. ..+|.+ .+++...+..+|..+|++++.
T Consensus 13 PTG~lHLGn~vg~l~-~--~~~lQ~--~~~~~~~Ia-D~ha~~~-------~~d~~~-i~~~~~~~~~~~lA~Gldp~k~ 78 (348)
T 2yy5_A 13 ASGKQHLGNYLGVMQ-S--LIELQE--QCQLFVFVA-DLHSITV-------DFQPQA-LKQNNFDLVRTLLAVGLDPQKA 78 (348)
T ss_dssp CCTTCBHHHHHHTGG-G--HHHHHH--HSEEEEEEC-HHHHTTS-------CCCHHH-HHHHHHHHHHHHHHTTCCTTTE
T ss_pred CCCcccHHHHHHHHH-H--HHHHHh--CCcEEEEEc-ChhhccC-------CCCHHH-HHHHHHHHHHHHHHhCCChhHe
Confidence 679999999997654 2 123443 777655443 3343321 134443 344455667788889999873
Q ss_pred --cCCCCCHHHHH
Q psy7266 371 --FGRTSTPQQTE 381 (1175)
Q Consensus 371 --~~~T~~~~~~~ 381 (1175)
|..+.-+.|.+
T Consensus 79 ~if~qS~~~~~~e 91 (348)
T 2yy5_A 79 CLFLQSDLLEHSM 91 (348)
T ss_dssp EEEEGGGCHHHHH
T ss_pred EEEECCcccchhH
Confidence 22344445444
|
| >3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.20 E-value=1 Score=42.63 Aligned_cols=63 Identities=6% Similarity=-0.166 Sum_probs=47.6
Q ss_pred EEEec-----CCCchHHHHHHHHHhcCCC---cEEEEecCcccc------cCCCCcccEEEeCCCcEEeCHHHHHHHH
Q psy7266 2 KCLSN-----RNNVQTLKLLITAEFSTTK---LDVELVDVADAR------LLLSKTVPVLELDDGSQLFSANQSCLYL 65 (1175)
Q Consensus 2 ~Ly~~-----~~sp~~~~v~ial~~~gi~---~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l~eS~aI~~YL 65 (1175)
.||+. |.||+|.+++-+|...|++ |+.+.++..... .....+||.+ +.||..|.+...+..+.
T Consensus 19 vvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~v-fI~g~~iGG~d~l~~l~ 95 (121)
T 3gx8_A 19 VLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQL-YVNKEFIGGCDVITSMA 95 (121)
T ss_dssp EEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEE-EETTEEEESHHHHHHHH
T ss_pred EEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeE-EECCEEEecHHHHHHHH
Confidence 57776 4899999999999999999 776666533211 2346689999 58889999887777654
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=84.72 E-value=0.18 Score=62.35 Aligned_cols=49 Identities=31% Similarity=0.379 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHhhcccchhccccCcccccchhHHHHHHHHHHHHHHHhc
Q psy7266 845 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKS 893 (1175)
Q Consensus 845 ~~~~~l~~~v~~qg~~vr~lk~~~~~k~~~~~~v~~ll~lk~~~~~~~~ 893 (1175)
..+..+...|++||+.||.||+.+|.+.+|+++|+.|..+|+.++.+..
T Consensus 8 ~~l~~~~~~v~~~~~~vr~lk~~~a~~~~i~~av~~l~~~k~~~~~~~~ 56 (693)
T 2zt5_A 8 EVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKEL 56 (693)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455678899999999999999999999999999999999999987653
|
| >3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=84.05 E-value=0.64 Score=53.09 Aligned_cols=82 Identities=20% Similarity=0.279 Sum_probs=48.8
Q ss_pred EEccCCCCCCCCCCchhhhhhHHhHHHHHHHHH-cCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRL-VNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 285 i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~-~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
|.++. -|||.|||||..+++- .+.++ .|++++|.. .|-|.+-. ..+|.++ +++...+..+|..
T Consensus 38 i~sG~-~PTG~lHLGhyvGal~------~~~~LQ~~~~~~~~I-aD~hAlt~-------~~~~~~l-r~~~~~~aa~~lA 101 (388)
T 3prh_A 38 IFSGI-QPSGSVTLGNYIGAMK------QFVELQHDYNSYFCI-VDQHAITV-------PQDRLEL-RKNIRNLAALYLA 101 (388)
T ss_dssp EEEEE-CCCSCCBHHHHHHTHH------HHHHTTTTSEEEEEE-CHHHHTTS-------CCCHHHH-HHHHHHHHHHHHH
T ss_pred EEEee-CCCCcchHHHHHHHHH------HHHHHHccCcEEEEE-ecceeeec-------CCCHHHH-HHHHHHHHHHHHH
Confidence 55554 5889999999987542 12222 388886655 46555421 2344443 4445566778888
Q ss_pred ccccccc---cCCCCCHHHHHH
Q psy7266 364 FEIDFDY---FGRTSTPQQTEI 382 (1175)
Q Consensus 364 lgi~~D~---~~~T~~~~~~~~ 382 (1175)
+|++.+. |..+.-+.|.+.
T Consensus 102 ~GlDp~kt~if~qS~v~~~~el 123 (388)
T 3prh_A 102 VGLDPEKATLFIQSEVPAHAQA 123 (388)
T ss_dssp TTCCTTTEEEEEGGGSTHHHHH
T ss_pred hCCChhHeEEEecccccchHHH
Confidence 9999874 223434555544
|
| >3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* | Back alignment and structure |
|---|
Probab=83.71 E-value=0.49 Score=53.97 Aligned_cols=79 Identities=8% Similarity=-0.019 Sum_probs=48.0
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHH
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHR 358 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~ 358 (1175)
.+++|+|.++. -|||.|||||..+ ++ ..+++...|++|.+.. .|.|..-+ ......+..+.+...+.
T Consensus 67 ~gk~~~v~sG~-~PTG~lHLGhyv~-~~----~~~~lq~~~~~~~~~I-aD~ha~t~------~~~~~~e~~r~~~~~~~ 133 (372)
T 3a04_A 67 RGERVAVLTGF-MPSGKFHFGHKLT-VD----QLIYLQKNGFKVFVAI-ADAEAFAV------RRIGREEAVRIAVEEYI 133 (372)
T ss_dssp TTCCCEEEEEE-CCCSCCBHHHHHH-HH----HHHHHHHTTCEEEEEE-CHHHHHHT------TCCCHHHHHHHHHHTTH
T ss_pred cCCCCEEEeCc-CCCcHhHHHHHHH-HH----HHHHHHhCCCeEEEEE-ecchhhcc------CCCCCHHHHHHHHHHHH
Confidence 34566777765 6799999999884 32 2444555699986544 45553311 11222333445555556
Q ss_pred HHHhhccccccc
Q psy7266 359 EVYEWFEIDFDY 370 (1175)
Q Consensus 359 ~~~~~lgi~~D~ 370 (1175)
.+|-.+|++.+.
T Consensus 134 ~~~lA~GlDP~k 145 (372)
T 3a04_A 134 ANMIALGLDPKD 145 (372)
T ss_dssp HHHHHHTCCTTT
T ss_pred HHHHHcCCChHH
Confidence 777889998874
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=83.31 E-value=1.4 Score=49.09 Aligned_cols=63 Identities=10% Similarity=0.001 Sum_probs=39.2
Q ss_pred CCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhcccc
Q psy7266 292 VNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEID 367 (1175)
Q Consensus 292 ~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~ 367 (1175)
|||.||||| +.++. .+.+++ ..|+++++..|= .|+.-. ...+ .+..+++...+..+|.++|++
T Consensus 37 PTg~lHlGh-l~~l~---~~~~lQ-~~g~~~~~~i~D-~~a~~~------~~~~-~e~i~~~~~~~~~~~~a~G~d 99 (314)
T 2zp1_A 37 PSGKIHLGH-YLQIK---KMIDLQ-NAGFDIIILLAD-LAAYLN------QKGE-LDEIRKIGDYNKKVFEAMGLK 99 (314)
T ss_dssp CCSSCBHHH-HHHHH---HHHHHH-HTTEEEEEEECH-HHHHHT------TCCC-HHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCcchhh-HHHHH---HHHHHH-HCCCCEEEEEec-ceEecC------CCCC-HHHHHHHHHHHHHHHHhcCCC
Confidence 579999999 65443 344444 458888776653 222210 0112 345566667888999999987
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=82.70 E-value=1.2 Score=50.95 Aligned_cols=78 Identities=15% Similarity=0.024 Sum_probs=45.7
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
++++.|.++. -|||.|||||..+. ....++++..|..+.++.|-++ +......++.++ +++......
T Consensus 80 ~~~~~vysG~-~PTG~lHLGh~v~~----~~~~~lQ~~~g~~v~i~I~D~~-------a~~~r~~~~e~i-~~~~~~~~~ 146 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKEVALEEYITL----EFARYLQDAFNIQVIIQILDDI-------KVLNREATINEA-SKMSNDLMK 146 (386)
T ss_dssp TCCEEEEEEE-CCCSSCBGGGHHHH----HHHHHHHHHHCCEEEEEECHHH-------HHHTTSCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEecc-CCCCCccHHHHHHH----HHHHHHHHhcCCeEEEEeCchH-------HhhcCCCCHHHH-HHHHHHHHH
Confidence 3456666665 58899999998864 3344455555777766633321 111112455443 444445566
Q ss_pred HHhhccccccc
Q psy7266 360 VYEWFEIDFDY 370 (1175)
Q Consensus 360 ~~~~lgi~~D~ 370 (1175)
++-.+|++.+.
T Consensus 147 ~~lA~GlDp~k 157 (386)
T 3hzr_A 147 YILAFGFNEDK 157 (386)
T ss_dssp HHHHTCCCGGG
T ss_pred HHHHcCCCCcc
Confidence 77788888763
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.43 E-value=0.26 Score=59.28 Aligned_cols=43 Identities=37% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHH
Q psy7266 1033 VEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLE 1075 (1175)
Q Consensus 1033 ~~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k 1075 (1175)
...|.+.|..||+.||.||+.|+++..++++|++|++||+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 57 (517)
T 4g85_A 15 RAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLG 57 (517)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHhhhhhcccccccCCHHHHHHHHHHHHHhhhhcC
Confidence 3568899999999999999999999999999999999999885
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.22 E-value=0.85 Score=51.32 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=44.9
Q ss_pred CCCCCCCchhhhhhHHhHHHHHHHHHcC-CCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 292 VNNVPHLGNIIGCVLSADVFSRFCRLVN-RNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 292 ~nG~lHiGH~~~~~l~~D~~aR~~r~~G-~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
|||.|||||..+.+. -+.++++ .| +++++..| |-|++-.- . +.++ +..+++...+..+|..+|++.+.
T Consensus 10 PTg~lHlGh~~g~l~---~~~~lQ~-~G~~~~~~~Ia-D~~a~~~~----~-~~~~-~~i~~~~~~~~~~~la~Gldp~k 78 (337)
T 2el7_A 10 PSGEIHIGNYLGAIK---QWVAIGE-KLGRDAFFCIV-DYHALTNP----L-AYDP-STLAQRTFEAALVNIAAGLDPEK 78 (337)
T ss_dssp SCSCCBHHHHHTHHH---HHHHHHH-HHGGGEEEEEC-GGGGGGST----T-TSCH-HHHHHHHHHHHHHHHHHTCCTTT
T ss_pred CCCcccHHHHHHHHH---HHHHHHh-cCCCCEEEEEe-CceeecCC----C-CCCH-HHHHHHHHHHHHHHHHhCCChhh
Confidence 679999999996532 2234443 47 88755544 33443110 0 1233 34455555666778889998763
Q ss_pred ---cCCCCCHHHHHHHH
Q psy7266 371 ---FGRTSTPQQTEIVQ 384 (1175)
Q Consensus 371 ---~~~T~~~~~~~~v~ 384 (1175)
|..+.-+.|.+..+
T Consensus 79 ~~i~~qS~~~~~~el~~ 95 (337)
T 2el7_A 79 VTLFVQSHVPEHTELSW 95 (337)
T ss_dssp SEEEEGGGSTHHHHHHH
T ss_pred eEEEEcCcchhhHHHHH
Confidence 22233344554443
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=81.44 E-value=0.91 Score=52.03 Aligned_cols=75 Identities=11% Similarity=0.008 Sum_probs=42.5
Q ss_pred cEEEEccCCCCC-CCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHc-CCCchhhHHHHHHHHHH
Q psy7266 282 NILITSALPYVN-NVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE-GLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 282 ~~~i~~~~Py~n-G~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~-g~~p~~~~~~~~~~~~~ 359 (1175)
++.|.++. -|| |.|||||.... ..+.++++.-|..|.+..| |.| +.... ..++.+ ++++...+..
T Consensus 74 ~~~vy~G~-~PTa~~lHlGh~v~~----~~~~~lQ~~~~~~v~i~I~-D~~------~~~~r~~~~~e~-i~~~~~~~~~ 140 (393)
T 3hv0_A 74 LFYLYTGR-GPSSESLHVGHLVPF----LFTKYLQDTFKVPLVIQLT-DDE------KFIFKSNLTLEE-THNYAYENMK 140 (393)
T ss_dssp CCEEEEEE-CCSSSSCBSTTHHHH----HHHHHHHHHHCCCEEEEEC-HHH------HHHHCTTCCHHH-HHHHHHHHHH
T ss_pred CeEEEeCC-CCCCCCccHHHHHHH----HHHHHHHHhcCCCeEeecc-ChH------HHhhccCCCHHH-HHHHHHHHHH
Confidence 44555554 466 78999997753 3455566665766665433 222 11122 445443 4444555667
Q ss_pred HHhhcccccc
Q psy7266 360 VYEWFEIDFD 369 (1175)
Q Consensus 360 ~~~~lgi~~D 369 (1175)
+|..+|++.+
T Consensus 141 ~~lA~GlDp~ 150 (393)
T 3hv0_A 141 DIIACGFDPE 150 (393)
T ss_dssp HHHTTCCCTT
T ss_pred HHHHcCCCCc
Confidence 7777888765
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=80.81 E-value=1.1 Score=51.19 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=37.8
Q ss_pred EeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCC-ccccc-CCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 555 FMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDG-KFSKS-RGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 555 ~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~-KMSKS-~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
.+|.|+.++..+ ---+.... +.+.| .++.+.+| .++|. ||||| .||.|+..| +++.+|=-+.+
T Consensus 229 pvG~DQ~~hl~l-~Rdla~r~--n~~~p-~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D------~p~~i~kKI~k 294 (386)
T 3hzr_A 229 LDSIKNVQFHSI-IDQIATTL--NFIQP-TVLFHKMVPLLSGVTKFDIPSDHNSILLSD------NAKQVERKINK 294 (386)
T ss_dssp EEEGGGHHHHHH-HHHHHHHH--TCCCC-EEEEECCCCCTTCTTCCCCCCTTTSCBTTC------CHHHHHHHHHH
T ss_pred ccccchHHHHHH-HHHHHHHc--CCCCc-eEeecCeeeCCCCCCccCcCCCCCeeecCC------CHHHHHHHHHH
Confidence 359999765432 11222223 34455 45566666 47885 99999 899998765 23445544544
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=80.76 E-value=1.1 Score=51.39 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=32.9
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCC--CcccccCCC-ccCchh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYED--GKFSKSRGT-GVFGNN 610 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G--~KMSKS~GN-~v~~~d 610 (1175)
+..+|.|+.+++.+ +-=.+-.+++..|..+ .+.+| .++| +|||||.+| .|++.|
T Consensus 210 ~vpvG~DQ~~hl~l---~Rdla~r~n~~~p~~l-~~~~l~gLdG~~~KMSKS~~ns~I~L~D 267 (392)
T 3jxe_A 210 LIPAAIDQDPYWRL---QRDFAESLGYYKTAAL-HSKFVPSLTSLSGKMSASKPETAIYLTD 267 (392)
T ss_dssp EEEEEGGGHHHHHH---HHHHTGGGTSCCCEEE-EECCCCCSSCSSSCCCTTSGGGCCBTTC
T ss_pred eeecccchHHHHHH---HHHHHHHcCCCCCeee-ecccccCCCCCccccccCCCCCeeeCCC
Confidence 45889999764322 1112222234455544 45666 4787 599999998 887654
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=80.54 E-value=1.3 Score=51.54 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=44.2
Q ss_pred cEEEEccCCCCC-CCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHH
Q psy7266 282 NILITSALPYVN-NVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREV 360 (1175)
Q Consensus 282 ~~~i~~~~Py~n-G~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~ 360 (1175)
++.|.++. -|| |.|||||..... .+.++++..|+.+++..| |.|+.-. ....++.+ .+++...+..+
T Consensus 102 ~~~vy~G~-dPTag~LHLGh~v~~~----~l~~lQ~~~g~~~i~lI~-D~ta~l~-----~~~~t~e~-i~~~~~~~~~~ 169 (432)
T 2ip1_A 102 PFFLYTGR-GPSSDSMHLGHMIPFV----FTKWLQEVFDVPLVIELT-DDEKFLF-----KHKLTIND-VKNFARENAKD 169 (432)
T ss_dssp CCEEEEEE-CCCSSCCBGGGHHHHH----HHHHHHHHHTCCEEEEEC-HHHHHHH-----CTTCCHHH-HHHHHHHHHHH
T ss_pred CeEEEEee-cCCCCCccHHHHHHHH----HHHHHHHHcCCeEEEEEe-cccceeC-----CCCCCHHH-HHHHHHHHHHH
Confidence 34444444 366 899999998533 234555547998877777 3333210 01245433 45555455666
Q ss_pred Hhhcccccc
Q psy7266 361 YEWFEIDFD 369 (1175)
Q Consensus 361 ~~~lgi~~D 369 (1175)
|..+|++.+
T Consensus 170 ~lA~GlDp~ 178 (432)
T 2ip1_A 170 IIAVGFDPK 178 (432)
T ss_dssp HHTTTCCGG
T ss_pred HHHhCCCCC
Confidence 777888765
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=80.38 E-value=1.2 Score=49.49 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=32.4
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCC-CcccccCCCccCchh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYED-GKFSKSRGTGVFGNN 610 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G-~KMSKS~GN~v~~~d 610 (1175)
+.+.|.|+.+... +.+... . +.-.++.+.+| ..+| +|||||.||.|++.|
T Consensus 166 ~v~~G~DQ~~~~~-----l~R~i~--~-~~~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d 217 (314)
T 2zp1_A 166 VAVGGMEQRKIHM-----LARELL--P-KKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (314)
T ss_dssp EEEEEGGGHHHHH-----HHHHHS--S-SCCEEEEECCCBCTTSSSBCCTTTTCSCBTTC
T ss_pred EEEcChhHHHHHH-----HHHHhc--C-CCcEEeeccccccCCcccccCCCCcceecCCC
Confidence 7788999977431 122222 1 22234455566 4779 799999999998765
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=80.25 E-value=1.9 Score=39.84 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=38.4
Q ss_pred EEEecCCCchHHHHHHHHHh----cCCCcEEEEecCcccc--cCCCCcccEEE-eCCCcEE
Q psy7266 2 KCLSNRNNVQTLKLLITAEF----STTKLDVELVDVADAR--LLLSKTVPVLE-LDDGSQL 55 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~----~gi~~e~~~v~~~~~~--~~P~g~vP~L~-~~dG~~l 55 (1175)
++|+.+.||+|..+.-++.. .|++|+.+.|+-.... .... +||+|. ..||..+
T Consensus 33 v~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~l~~~ygv-~VP~l~~~~dG~~v 92 (107)
T 2fgx_A 33 VVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDGNEHLTRLYND-RVPVLFAVNEDKEL 92 (107)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTTCHHHHHHSTT-SCSEEEETTTTEEE
T ss_pred EEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhCC-CCceEEEEECCEEE
Confidence 68999999999999998887 6888888777643211 1122 499995 3577766
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=80.11 E-value=0.96 Score=51.57 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=39.1
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
-|||.|||||. ++..-.+.+++ ..|++|.+..| |-|+.-. ...|.++.+ .+.....+..+|..+|++.+.
T Consensus 64 ~PTg~lHlG~g---vl~~~~~~~lQ-~~G~~~~~lIa-D~ha~i~----d~~~~~~~~-i~~~~~~~~~~~~a~G~dp~k 133 (373)
T 3vgj_A 64 EPSGRMHIAQG---LLKSIIVNKLT-SNGCTFIFWIA-DWFAHLN----NKMSGDLKK-IKKVGSYFIEVWKSCGMNMEN 133 (373)
T ss_dssp CCCSSCBHHHH---HHHHHHHHHHH-TTTCEEEEEEC-HHHHHHT----TGGGGCHHH-HHHHHHHHHHHHHHTTCCSTT
T ss_pred CCCCCceehhh---HHHHHHHHHHH-HCCCcEEEEEe-cceeEec----CCCCCCHHH-HHHHHHHHHHHHHHcCCChhh
Confidence 36789999992 22122245554 45898877766 4444311 011223332 344445556778888988763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1175 | ||||
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 1e-65 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 1e-62 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 4e-52 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 6e-40 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 4e-31 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 4e-25 | |
| d1rqga1 | 210 | a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (Me | 9e-25 | |
| d1rqga1 | 210 | a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (Me | 0.001 | |
| d1pfva1 | 162 | a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (Me | 1e-23 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 5e-22 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 9e-22 | |
| d2d5ba1 | 152 | a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (Me | 2e-21 | |
| d1rqga3 | 35 | g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (Me | 1e-16 | |
| d1pfva3 | 35 | g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (Me | 4e-13 | |
| d1axda1 | 129 | a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays | 4e-12 | |
| d1r5aa1 | 129 | a.45.1.1 (A:87-215) Class delta GST {Mosquito (Ano | 3e-11 | |
| d1r6ta1 | 54 | a.16.1.3 (A:7-60) N-terminal domain of eukaryotic | 4e-11 | |
| d1r6ta1 | 54 | a.16.1.3 (A:7-60) N-terminal domain of eukaryotic | 4e-11 | |
| d1r6ta1 | 54 | a.16.1.3 (A:7-60) N-terminal domain of eukaryotic | 2e-07 | |
| d1r6ta1 | 54 | a.16.1.3 (A:7-60) N-terminal domain of eukaryotic | 5e-07 | |
| d1v2aa1 | 125 | a.45.1.1 (A:84-208) Class delta GST {Mosquito (Ano | 5e-11 | |
| d1pmta1 | 121 | a.45.1.1 (A:81-201) Class beta GST {Proteus mirabi | 1e-10 | |
| d1jlwa1 | 127 | a.45.1.1 (A:91-217) Class delta GST {Mosquito (Ano | 1e-10 | |
| d1f2ea1 | 121 | a.45.1.1 (A:81-201) Class beta GST {Sphingomonas p | 1e-10 | |
| d1aw9a1 | 135 | a.45.1.1 (A:83-217) Class phi GST {Maize (Zea mays | 2e-10 | |
| d1gnwa1 | 126 | a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress | 3e-10 | |
| d1jlva1 | 123 | a.45.1.1 (A:85-207) Class delta GST {Mosquito (Ano | 3e-10 | |
| d1fyja_ | 57 | a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas | 5e-10 | |
| d1fyja_ | 57 | a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas | 5e-10 | |
| d1fyja_ | 57 | a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas | 1e-08 | |
| d1fyja_ | 57 | a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas | 2e-08 | |
| d1d2da_ | 56 | a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas | 8e-10 | |
| d1d2da_ | 56 | a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas | 8e-10 | |
| d1d2da_ | 56 | a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas | 5e-07 | |
| d1d2da_ | 56 | a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas | 1e-06 | |
| d1n2aa1 | 121 | a.45.1.1 (A:81-201) Class beta GST {Escherichia co | 8e-10 | |
| d1nhya1 | 144 | a.45.1.1 (A:76-219) GST-like domain of elongation | 8e-09 | |
| d2hrkb1 | 118 | a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, | 1e-07 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 2e-07 | |
| d1ljra1 | 165 | a.45.1.1 (A:80-244) Class theta GST {Human (Homo s | 7e-07 | |
| d1gsua1 | 133 | a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus | 1e-06 | |
| d2gsqa1 | 127 | a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommast | 5e-06 | |
| d1tw9a1 | 129 | a.45.1.1 (A:78-206) Class sigma GST {Heligmosomoid | 5e-06 | |
| d1tu7a1 | 131 | a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvu | 6e-06 | |
| d1k0da1 | 151 | a.45.1.1 (A:201-351) Yeast prion protein ure2p, ni | 6e-06 | |
| d2c4ja1 | 133 | a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapi | 6e-06 | |
| d2a2ra1 | 132 | a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapi | 1e-05 | |
| d1duga1 | 140 | a.45.1.1 (A:81-220) Class alpha GST {Schistosoma j | 2e-05 | |
| d1k3ya1 | 142 | a.45.1.1 (A:81-222) Class alpha GST {Human (Homo s | 2e-05 | |
| d2gsta1 | 133 | a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norv | 4e-05 | |
| d1m0ua1 | 127 | a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (D | 5e-05 | |
| d2cvda1 | 124 | a.45.1.1 (A:76-199) Class sigma GST {Human (Homo s | 7e-05 | |
| d1okta1 | 126 | a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Pla | 8e-05 | |
| d1e6ba1 | 133 | a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cres | 1e-04 | |
| d2fhea1 | 136 | a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepa | 5e-04 | |
| d1fw1a1 | 125 | a.45.1.1 (A:88-212) Class zeta GST {Human (Homo sa | 0.002 |
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 224 bits (570), Expect = 1e-65
Identities = 86/389 (22%), Positives = 156/389 (40%), Gaps = 60/389 (15%)
Query: 282 NILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALE 341
IL+T ALPY N HLG+++ + ADV+ R+ R+ ++ D +GT KA +
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQ-ADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 61
Query: 342 EGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASV 401
G+TP Q+ + H+ + F I +D + T + + ++ + ++ R+ + GF + ++
Sbjct: 62 LGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTI 121
Query: 402 EQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTV 461
QL+ + FL DRFV P +
Sbjct: 122 SQLYDPEKGMFLPDRFVV-----------------------------------SGATPVM 146
Query: 462 KSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVP 521
+ S F +LP + LQ+W + W + GL+ I+RD +
Sbjct: 147 RDSEHFFFDLPSFSEMLQAWTRS--GALQEQVANKMQEWFESGLQQWDISRDAPY-FGFE 203
Query: 522 LPGFENKYSLSSSPSLVQFLPTATPQSK-----------------ITLYQFMAKDNVPFH 564
+P KY + + ++ + LY F+ KD V FH
Sbjct: 204 IPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFH 263
Query: 565 SIMFPATLVAAGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFY 624
S+ +PA L + + +++ Y+ K SKSRGT + + + AD R+Y
Sbjct: 264 SLFWPAMLEGSNFRKP--SNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDADSLRYY 320
Query: 625 LL-YVRPENQDTSFSWQDLATKNNSELLN 652
+ D + +D + N++++N
Sbjct: 321 YTAKLSSRIDDIDLNLEDFVQRVNADIVN 349
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 215 bits (548), Expect = 1e-62
Identities = 110/396 (27%), Positives = 179/396 (45%), Gaps = 66/396 (16%)
Query: 283 ILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEE 342
++TSALPY N H G++ G L AD+F R+ RL + +++ GTDE+GT +AL+E
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 343 GLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVE 402
G +PR+I D++ + ++ +I FD+FGRT P ++ Q F + ++ G +
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTK 123
Query: 403 QLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVK 462
Q +C F + R C + + +
Sbjct: 124 QAYCEHDKMF-----------------------------------LPDRFAICGRPISFR 148
Query: 463 SSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL 522
S ++++ ++L+ W W N + + +W+++GL+ R ITRDL WGIPVPL
Sbjct: 149 DSAHYYIKMQDFAERLKRW--IEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPL 206
Query: 523 PGFENKY------------SLSSSPSLVQFLPTAT--------PQSKITLYQFMAKDNVP 562
+ K +S + + + + + F+ KDN+P
Sbjct: 207 DEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIP 266
Query: 563 FHSIMFPATLVAAGDQ--------YTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDT 614
FH+I +PA L+A G + I A EYL E KFS SR ++ + D
Sbjct: 267 FHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDV 326
Query: 615 GLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSEL 650
PAD R+YL + PE +D+ FS+ D + N EL
Sbjct: 327 -FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 361
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 184 bits (468), Expect = 4e-52
Identities = 83/375 (22%), Positives = 143/375 (38%), Gaps = 33/375 (8%)
Query: 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKA 339
E +T+ + YVN PHLG+ V+ AD +R+ RL T +++GTDE+G A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAA 60
Query: 340 LEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSA 399
G P+ D+ + ++ I +D F RT+ + ++VQ + +V++AG
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYG 120
Query: 400 SVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAP 459
E L+C C+RF ++ + R + G +E +P
Sbjct: 121 EYEGLYCVSCERFYTEKE---LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWL------- 170
Query: 460 TVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIP 519
++ +Q + N + A L + WGIP
Sbjct: 171 ---------------QEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIP 215
Query: 520 VP-----LPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVA 574
+P + L+ +L A + + KD + H++ +P L A
Sbjct: 216 LPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKA 275
Query: 575 AGDQYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQD 634
AG + + + L + K SK+ G V + D R+YLL P QD
Sbjct: 276 AGIPMYR-HLNVGGFLLGPDGRKMSKTLGNVVDPFALLE-KYGRDALRYYLLREIPYGQD 333
Query: 635 TSFSWQDLATKNNSE 649
T S + L T+ ++
Sbjct: 334 TPVSEEALRTRYEAD 348
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 151 bits (382), Expect = 6e-40
Identities = 65/401 (16%), Positives = 120/401 (29%), Gaps = 34/401 (8%)
Query: 276 PQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTAT 335
P+ + +I P V H+G+ + L D R+ R+ +++ GTD G AT
Sbjct: 29 PKSGKPPFVIFMPPPNVTGSLHMGHALDNSL-QDALIRYKRMRGFEAVWLPGTDHAGIAT 87
Query: 336 ETKA----LEEGLTPRQICDKYFAIHREVYE--------------WFEIDFDYFGRTSTP 377
+ L+EG T + + F ++ D+ T
Sbjct: 88 QVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDE 147
Query: 378 QQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437
+++ V++ F R + G A C +C+ L+D VE +
Sbjct: 148 KRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETCSRCGTPIEYAIFPQWW 207
Query: 438 CGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVIC 497
A E+++ + + L ++D S Q + C
Sbjct: 208 LRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDC 267
Query: 498 KAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKI------- 550
+A + P + + S + L T +
Sbjct: 268 QAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFY 327
Query: 551 -TLYQFMAKDNVPFHSIMFPATLVAAGDQ--YTKV-NHIMATEYLNYEDGKFSKSRGTGV 606
D + + + + V H + L+ + K SKS+G +
Sbjct: 328 PGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGL---VLDEKGQKMSKSKGNVI 384
Query: 607 FGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNN 647
+ AD RF L+Y+ QD + L N
Sbjct: 385 DPLEMVER-YGADALRFALIYLATGGQDIRLDLRWLEMARN 424
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 126 bits (316), Expect = 4e-31
Identities = 57/410 (13%), Positives = 111/410 (27%), Gaps = 57/410 (13%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL 344
+ P N +PH+G+ D+F R+ + +G D +G E + ++
Sbjct: 42 VYEGPPTANGLPHVGHAQARSY-KDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLG 100
Query: 345 TP-------------RQICDKYFAIHREVYEWFEI------DFDYFGRTSTPQQTEIVQH 385
Q C + + + +E F D + T P E +
Sbjct: 101 LKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWW 160
Query: 386 LFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAI 445
+ G +C +C L+ V P C
Sbjct: 161 SLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATE-SWFIKN 219
Query: 446 ELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSW-VSETSDQWSSNARVICKAWLKDG 504
L + + +Q + L W +S + +C+A K+
Sbjct: 220 TLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEE 279
Query: 505 LKPRCITRDLKWGIPVPLPGFENKYSL-------------------------SSSPSLVQ 539
+ P+P P ++ + S +
Sbjct: 280 AIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFAS 339
Query: 540 FLPTATPQSKI-------TLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLN 592
+ + + + + F+S+ ++ + V I L+
Sbjct: 340 LHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNV--ICHGLILD 397
Query: 593 YEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDL 642
+ K SKS+G V + AD R+Y+ P D F +
Sbjct: 398 EKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYVSAPPEADRRFGPNLV 446
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 108 bits (270), Expect = 4e-25
Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 32/239 (13%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL 344
+ PY + H+G++ + DV +RF R+ L+ G D +G E AL+ G+
Sbjct: 37 VLVMFPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGV 95
Query: 345 TPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQL 404
P+ +E I +D+ +T E
Sbjct: 96 HPKDWTYANIRQAKESLRLMGILYDWDREVTT------------------------CEPE 131
Query: 405 HCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVK-S 463
+ + +G+ + + + C C ++ ++++ RC + P K
Sbjct: 132 YYRWNQWIFLKMWEKGLAYRAKGL---VNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRE 188
Query: 464 STQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL 522
Q +L + ++ + + + L+ I+R WG P+P+
Sbjct: 189 LEQWYLRITAYAER---LLKDLEGLNWPEKVKAMQRAWIGRLRDWLISRQRYWGTPIPM 244
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 210 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 101 bits (252), Expect = 9e-25
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 652 NNLGNFINRALSFIEKNYGSTIPEISPIHE-DFLLLALINRELSAYYSVLDKAKLRDGIR 710
NNLGNF++RAL+F+ + + +PE + E D L I + ++ + +D ++
Sbjct: 2 NNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALK 61
Query: 711 YILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTAST 770
+++++ + N+Y +QPW K + E K R T + I Q+ L +LL P++P +
Sbjct: 62 RVMSLASFGNRYFDHKQPW---KTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEK 118
Query: 771 IASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQVDEWKLKYGGQQNKES 830
I L +K LP GHK+ P LF+K+ Q+ + L Y + N E
Sbjct: 119 IWHLLNLDEVKRWEFRE------LPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEG 172
Query: 831 SNNKKEKKQAEITFSSVEELE 851
+ +K V + +
Sbjct: 173 ARILLDKYYKREDVIRVAKEK 193
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 210 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 39.5 bits (91), Expect = 0.001
Identities = 14/68 (20%), Positives = 27/68 (39%)
Query: 970 NNTKCNNSSKNSSSHKIGTPAPLFRKIEQAQVDEWKLKYGGQQNKESSNNKKEKKQAEIT 1029
+ K + + HK+ P LF+K+ Q+ + L Y + N E + +K
Sbjct: 126 DEVKRWEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLDKYYKRED 185
Query: 1030 FSSVEELE 1037
V + +
Sbjct: 186 VIRVAKEK 193
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 96.3 bits (239), Expect = 1e-23
Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 11/162 (6%)
Query: 656 NFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNI 715
N +R FI K + + + L + + +R I+ +
Sbjct: 3 NLASRNAGFINKRFDGVLASELADPQ---LYKTFTDAAEVIGEAWESREFGKAVREIMAL 59
Query: 716 SRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQL 775
+ N+Y+ Q PWV+ K + + + + + +L L P +P + L
Sbjct: 60 ADLANRYVDEQAPWVVAK-QEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFL 118
Query: 776 GASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQVDE 817
+ +Q GHK+ L+ +I+ QV+
Sbjct: 119 NTEL-------TWDGIQQPLLGHKVNPFKALYNRIDMRQVEA 153
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 98.5 bits (244), Expect = 5e-22
Identities = 58/404 (14%), Positives = 118/404 (29%), Gaps = 46/404 (11%)
Query: 285 ITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGL 344
+ PY N H+G+ + +L D R+ + YV G D +G E ++G+
Sbjct: 52 LHDGPPYANGNLHMGHALNKIL-KDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGV 110
Query: 345 TPRQICDKYFAIHREVYEWFEID--------------FDYFGRTSTPQQTEIVQHLFDRV 390
+++ F + + +I+ F+ T P+ +F +
Sbjct: 111 DRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEM 170
Query: 391 HKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQP 450
G + LA+ +E + I+ +
Sbjct: 171 ADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDIL 230
Query: 451 RCKQCSQAPTVKSSTQLFLELPKIED----KLQSWVSETSDQWSSNARVIC--------K 498
+ + T+++ + + + + W ++ N +I
Sbjct: 231 DAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVA 290
Query: 499 AWLKDGLKPRCITRDLKWGIP--VPLPGFENK----------YSLSSSPSLVQFLPTATP 546
+ R+ K +P PG N S S L T
Sbjct: 291 DLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPE 350
Query: 547 QSKITLYQFMAKDNV-PFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDG-KFSKSRGT 604
S D + + ++ G K +++ ++ +G K SKS G
Sbjct: 351 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYK--FLLSHGFVMDGEGKKMSKSLGN 408
Query: 605 GVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDL-ATKNN 647
+ + ADI R ++ D S + L T ++
Sbjct: 409 VIVPDQVVKQ-KGADIARLWVSSTDYL-ADVRISDEILKQTSDD 450
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 95.2 bits (235), Expect = 9e-22
Identities = 30/362 (8%), Positives = 80/362 (22%), Gaps = 61/362 (16%)
Query: 274 VLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGT 333
++ + E + + + H+GN + +A + R ++ D+Y
Sbjct: 10 IIRERGEKEKYVVESGITPSGYVHVGNF-RELFTAYIVGHALRDKGYEVRHIHMWDDYDR 68
Query: 334 ATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKA 393
+ + + + +
Sbjct: 69 FRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRK-------------------- 108
Query: 394 GFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCK 453
+ ++ + + G+ I L +
Sbjct: 109 -----------FEEEVEKL-----------GIEVDLLYASELYKRGEYSEEIRLAFEKRD 146
Query: 454 QCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRD 513
+ + + + + R + DG
Sbjct: 147 KIMEILNK--------YREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCP 198
Query: 514 LKWGIPVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLV 573
V + K + ++ KD++ S +
Sbjct: 199 EGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVD-------FEPAGKDHLVAGSSYDTGKEI 251
Query: 574 AAGDQYTKVNHIMATEYL--NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPE 631
+ + E++ + GK S S+G + ++ + L + RF RP
Sbjct: 252 IKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYE-VLEPGLVRFIYARHRPN 310
Query: 632 NQ 633
+
Sbjct: 311 KE 312
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 152 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 89.5 bits (221), Expect = 2e-21
Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 9/160 (5%)
Query: 650 LLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGI 709
L ++LGN + R + + + IPE E L R + K +
Sbjct: 1 LADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPLV----RELKFHVAL 56
Query: 710 RYILNISRYCNQYMQTQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTAS 769
+ + N+Y+ ++PW LFK PE+ VL + + + S+LL+P MP +
Sbjct: 57 EEAMAYVKALNRYINEKKPWELFKKEPEEA---RAVLYRVVEGLRIASILLTPAMPDKMA 113
Query: 770 TIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRK 809
+ LG + L + LF K
Sbjct: 114 ELRRALGLKE-EVRLEEAERW-GLAEPRPIPEEAPVLFPK 151
|
| >d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} Length = 35 | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Pyrococcus abyssi [TaxId: 29292]
Score = 72.0 bits (177), Expect = 1e-16
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 418 VEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRC 452
V G CP C ED +GDQC+ CG+ + LI PRC
Sbjct: 1 VIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRC 35
|
| >d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} Length = 35 | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Escherichia coli [TaxId: 562]
Score = 62.0 bits (151), Expect = 4e-13
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 418 VEGVCPKCRYEDARGDQCDGCGQLINAIELIQPR 451
V+G CPKC+ D GD C+ CG + ELI+P+
Sbjct: 1 VKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPK 34
|
| >d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]} Length = 129 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class phi GST species: Maize (Zea mays), type I [TaxId: 4577]
Score = 62.6 bits (151), Expect = 4e-12
Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 69 DTKNESAINQWLEWESVELFPSVLSFFDNPKVLP---------------DNLKTKLNVLN 113
+ + + ++ W+E E+ + ++ + P + LK L V
Sbjct: 7 NLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYE 66
Query: 114 EAISNSFLIENST-TVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172
++ + ++AD+ + L + +L +Y ++ W+ + + P VQK
Sbjct: 67 ARLTKCKYLAGDFLSLADLNHVSVTLCLF-ATPYASVLDAYPHVKAWWSGLMERPSVQKV 125
Query: 173 L 173
Sbjct: 126 A 126
|
| >d1r5aa1 a.45.1.1 (A:87-215) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]} Length = 129 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]
Score = 60.0 bits (145), Expect = 3e-11
Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 15/125 (12%)
Query: 69 DTKNESAINQWLEWESVELFPSVLSFF--------DNPKVLPDNLKTKLNVLNEAISNS- 119
D ++ + ++Q L ++ L+ V+ ++ + L L +
Sbjct: 2 DFRSRAIVDQRLHFDLGTLYQRVVDYYFPTIHLGAHLDQTKKAKLAEALGWFEAMLKQYQ 61
Query: 120 FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQV---QKALKTW 176
+ N T+ADI + V + + L Y + W + + ++ +T
Sbjct: 62 WSAANHFTIADIALCVTVSQI---EAFQFDLHPYPRVRAWLLKCKDELEGHGYKEINETG 118
Query: 177 TEVLK 181
E L
Sbjct: 119 AETLA 123
|
| >d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 54 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (138), Expect = 4e-11
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 845 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQ 894
+S+ EL ++ATQG LVR +K+ K E V L+SLK +A +
Sbjct: 1 ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGE 50
|
| >d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 54 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (138), Expect = 4e-11
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 1031 SSVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQ 1080
+S+ EL ++ATQG LVR +K+ K E V L+SLK +A +
Sbjct: 1 ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGE 50
|
| >d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 54 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (111), Expect = 2e-07
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 915 ADVKALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGT 965
A + L I Q E+VR+LKA K + + L+SLK A G
Sbjct: 1 ASLLELFNSIATQGELVRSLKAG-NASKDEIDSAVKMLVSLKMSYKAAAGE 50
|
| >d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 54 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (108), Expect = 5e-07
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 1101 ADVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
A + L I Q E+VR+LKA K + + L+SLK A G
Sbjct: 1 ASLLELFNSIATQGELVRSLKAG-NASKDEIDSAVKMLVSLKMSYKAAAG 49
|
| >d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]} Length = 125 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]
Score = 58.8 bits (142), Expect = 5e-11
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 69 DTKNESAINQWLEWESVELFPSVLS----FFDNPKVLP---DNLKTKLNVLNEAISNS-F 120
D K S +NQ L ++ L+ ++ + + LK L++L + ++ +
Sbjct: 2 DPKVRSVVNQRLFFDIGTLYKRIIDVIHLVMKKEQPSDEQMEKLKGALDLLEQFVTERAY 61
Query: 121 LIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRI-SKLPQVQKALKTWTEV 179
+ TVADIC+ V L + ++ L + +I W +R+ +++P ++ K +
Sbjct: 62 AAADHLTVADICLLGTVTAL---NWLKHDLEPFPHIRAWLERVRAEMPDYEEFSKQVADD 118
Query: 180 LK 181
Sbjct: 119 TL 120
|
| >d1pmta1 a.45.1.1 (A:81-201) Class beta GST {Proteus mirabilis [TaxId: 584]} Length = 121 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class beta GST species: Proteus mirabilis [TaxId: 584]
Score = 58.1 bits (140), Expect = 1e-10
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 69 DTKNESAINQWLEWESVELFPSVLSFF------DNPKVLPDNLKTKLNVLNEAISNS-FL 121
+WL + + E+ F V+ + LK+K +N+ +S +
Sbjct: 7 KALERYHQIEWLNFLASEVHKGYSPLFSSDTPESYLPVVKNKLKSKFVYINDVLSKQKCV 66
Query: 122 IENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
+ TVAD ++T V L+ +++ + RI++ P V AL
Sbjct: 67 CGDHFTVADAYLFTLSQ---WAPHVALDLTDLSHLQDYLARIAQRPNVHSALV 116
|
| >d1jlwa1 a.45.1.1 (A:91-217) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-4 [TaxId: 123217]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-4 [TaxId: 123217]
Score = 58.1 bits (140), Expect = 1e-10
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 15/125 (12%)
Query: 69 DTKNESAINQWLEWESVELFPSVLSFF-------DNPKVLP---DNLKTKLNVLNEAISN 118
D + + ++Q L ++ L+ ++ P P +++ L LN +
Sbjct: 2 DPRRRAVVHQRLFFDVAVLYQRFAEYYYPQIFGQKVPVGDPGRLRSMEQALEFLNTFLEG 61
Query: 119 S--FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176
+ T+AD+ I + L Y N+ WY+R S +
Sbjct: 62 EQYVAGGDDPTIADLSILATIATYEV---AGYDLRRYENVQRWYERTSAIVPGADKNVEG 118
Query: 177 TEVLK 181
+V
Sbjct: 119 AKVFG 123
|
| >d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]} Length = 121 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class beta GST species: Sphingomonas paucimobilis [TaxId: 13689]
Score = 57.7 bits (139), Expect = 1e-10
Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 69 DTKNESAINQWLEWESVELFPSVLSFFDNPKVLPD-------NLKTKLNVLNEAISNS-F 120
+ + + L + E + + F P + ++K L L++ ++
Sbjct: 7 GSLDRYRLLSRLSFLGSEFHKAFVPLF-APATSDEAKAAAAESVKNHLAALDKELAGRDH 65
Query: 121 LIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
N+ +VADI ++ + + V +++Y + + +I++ P V ALK
Sbjct: 66 YAGNAFSVADIYLYVMLGWP---AYVGIDMAAYPALGAYAGKIAQRPAVGAALK 116
|
| >d1aw9a1 a.45.1.1 (A:83-217) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]} Length = 135 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class phi GST species: Maize (Zea mays), type III [TaxId: 4577]
Score = 57.9 bits (139), Expect = 2e-10
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 17/117 (14%)
Query: 76 INQWLEWESVELFPSVLSFFDNPKVLP---------------DNLKTKLNVLNEAISNSF 120
+ WLE ES +P+ V P + L L+V ++ +
Sbjct: 14 LEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVVDKHAEQLAKVLDVYEAHLARNK 73
Query: 121 LIENST-TVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176
+ T+AD + + L S + L+++ ++ W++ I P QK +
Sbjct: 74 YLAGDEFTLADANHASYLLYL-SKTPKAGLVAARPHVKAWWEAIVARPAFQKTVAAI 129
|
| >d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 126 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class phi GST species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 57.0 bits (137), Expect = 3e-10
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 20/122 (16%)
Query: 69 DTKN--ESAI-NQWLEWESVELFPSVLSFFDNPKVLP---------------DNLKTKLN 110
D+KN + AI ++ E + P L L+
Sbjct: 4 DSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLD 63
Query: 111 VLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQV 169
V + +L + T+ D+ + L + + L + + W I+K P
Sbjct: 64 VYEARLKEFKYLAGETFTLTDLHHIPAIQ-YLLGTPTKKLFTERPRVNEWVAEITKRPAS 122
Query: 170 QK 171
+K
Sbjct: 123 EK 124
|
| >d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]} Length = 123 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]
Score = 56.6 bits (136), Expect = 3e-10
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 12/122 (9%)
Query: 69 DTKNESAINQWLEWESVELFPSVLSFF--------DNPKVLPDNLKTKLNVLNEAISNS- 119
D + + +NQ L ++ L+ ++ +K ++ LN +
Sbjct: 2 DPQKRAVVNQRLYFDMGTLYQRFADYYYPQIFAKQPANAENEKKMKDAVDFLNTFLDGHK 61
Query: 120 FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTWTEV 179
++ +S T+AD+ + V L+ Y ++ WY+R K + E
Sbjct: 62 YVAGDSLTIADLTVLATVSTY---DVAGFELAKYPHVAAWYERTRKEAPGAAINEAGIEE 118
Query: 180 LK 181
+
Sbjct: 119 FR 120
|
| >d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (130), Expect = 5e-10
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 849 ELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQ 894
L VA QG++VR++K+ K + V +LLSLK + + Q
Sbjct: 4 VLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQ 49
|
| >d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (130), Expect = 5e-10
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 1035 ELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQ 1080
L VA QG++VR++K+ K + V +LLSLK + + Q
Sbjct: 4 VLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQ 49
|
| >d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (120), Expect = 1e-08
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 916 DVKALEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGT 965
D L + Q +VVR LKA K A + +LLSLK + TG
Sbjct: 1 DSLVLYNRVAVQGDVVRELKAK-KAPKEDVDAAVKQLLSLKAEYKEKTGQ 49
|
| >d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (118), Expect = 2e-08
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1102 DVKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
D L + Q +VVR LKA K A + +LLSLK + TG
Sbjct: 1 DSLVLYNRVAVQGDVVRELKAK-KAPKEDVDAAVKQLLSLKAEYKEKTG 48
|
| >d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 56 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 53.5 bits (129), Expect = 8e-10
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 850 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQ 894
+ +A QG +VR++K+ K++ V+ LLSLK + + +
Sbjct: 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTGK 46
|
| >d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 56 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 53.5 bits (129), Expect = 8e-10
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQ 1080
+ +A QG +VR++K+ K++ V+ LLSLK + + +
Sbjct: 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTGK 46
|
| >d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 56 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 45.5 bits (108), Expect = 5e-07
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 920 LEAEIEKQAEVVRTLKASAGGDKSVFAADLAKLLSLKQQLSALTGT 965
+ +I Q EVVR LKA K+ + LLSLK + TG
Sbjct: 2 VYDKIAAQGEVVRKLKAE-KAPKAKVTEAVECLLSLKAEYKEKTGK 46
|
| >d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 56 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 44.3 bits (105), Expect = 1e-06
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTG 1150
+ +I Q EVVR LKA K+ + LLSLK + TG
Sbjct: 2 VYDKIAAQGEVVRKLKAE-KAPKAKVTEAVECLLSLKAEYKEKTG 45
|
| >d1n2aa1 a.45.1.1 (A:81-201) Class beta GST {Escherichia coli [TaxId: 562]} Length = 121 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class beta GST species: Escherichia coli [TaxId: 562]
Score = 55.4 bits (133), Expect = 8e-10
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 69 DTKNESAINQWLEWESVELFPSVLSFF------DNPKVLPDNLKTKLNVLNEAISNS-FL 121
++ + +WL + + EL F + + L+ KL +NEA+ + ++
Sbjct: 7 NSISRYKTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKDEHWI 66
Query: 122 IENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
T+AD ++T + V+ L +I + R+++ P+VQ AL
Sbjct: 67 CGQRFTIADAYLFTVLRWA---YAVKLNLEGLEHIAAFMQRMAERPEVQDALS 116
|
| >d1nhya1 a.45.1.1 (A:76-219) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 144 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: GST-like domain of elongation factor 1-gamma species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (127), Expect = 8e-09
Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 12/118 (10%)
Query: 69 DTKNESAINQWLEWESVELFPSVLSFF--------DNPKVLP---DNLKTKLNVLNEAIS 117
D ++ I +W + +L + + N K + D + +++ +
Sbjct: 14 DLNAQAQIIRWQSLANSDLCIQIANTIVPLKGGAPYNKKSVDSAMDAVDKIVDIFENRLK 73
Query: 118 NS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
N +L + ++AD+ + + + I W++ + P ++ K
Sbjct: 74 NYTYLATENISLADLVAASIFTRYFESLFGTEWRAQHPAIVRWFNTVRASPFLKDEYK 131
|
| >d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Arc1p N-terminal domain-like domain: GU4 nucleic-binding protein 1, Arc1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.8 bits (116), Expect = 1e-07
Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 24/132 (18%)
Query: 51 DGSQLFSANQSCLYLSKFDTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLN 110
D F + Y F + + QW S + ++ + L+
Sbjct: 2 DLVTKFESLIISKYPVSFTKEQSAQAAQWE------------SVLKSGQI-----QPHLD 44
Query: 111 VLNEAISNS--FLIENSTTVADICIWTCVYPLLSDSKVR-----PLLSSYTNITPWYDRI 163
LN + ++ + T D+ ++ PL+ D ++Y +I W D +
Sbjct: 45 QLNLVLRDNTFIVSTLYPTSTDVHVFEVALPLIKDLVASSKDVKSTYTTYRHILRWIDYM 104
Query: 164 SKLPQVQKALKT 175
L +V K
Sbjct: 105 QNLLEVSSTDKL 116
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 52.3 bits (124), Expect = 2e-07
Identities = 48/365 (13%), Positives = 89/365 (24%), Gaps = 73/365 (20%)
Query: 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETK 338
+ + + V ++ H+G+ V + DV +R+ R + YV + +
Sbjct: 19 HAGEVGMYVCGITVYDLCHIGHGRTFV-AFDVVARYLRFLGYKLKYVRNITDIDDKIIKR 77
Query: 339 ALEEGLTPRQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSS 398
A E G + + D+ + E + DFD + H+ + +
Sbjct: 78 ANENGESFVAMVDRM------IAEMHK-DFDALNILRPDMEPRATHHIAEIIEL------ 124
Query: 399 ASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQA 458
EQL + V + G
Sbjct: 125 --TEQLIAKGHAYVADN---GDVMFDVPTDPTYGVLS----------------------- 156
Query: 459 PTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGI 518
L + + R L K + WG
Sbjct: 157 ----------------RQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGA 200
Query: 519 PVPLPGFENKYSLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ 578
P E D + H A
Sbjct: 201 GRPGWHIECSA------------MNCKQLGNHFDIHGGGSDLMFPHHENEIAQ-STCAHD 247
Query: 579 YTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFS 638
VN+ M + + + K SKS G + A+ R++L+ ++S
Sbjct: 248 GQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK-YYDAETVRYFLMSGHY-RSQLNYS 305
Query: 639 WQDLA 643
++L
Sbjct: 306 EENLK 310
|
| >d1ljra1 a.45.1.1 (A:80-244) Class theta GST {Human (Homo sapiens) [TaxId: 9606]} Length = 165 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class theta GST species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 7e-07
Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 19/130 (14%)
Query: 69 DTKNESAINQWLEWESVELFPSVLSFFDNPKVLP---------------DNLKTKLNVLN 113
D + + ++++L W + + + + P + L L
Sbjct: 9 DLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLE 68
Query: 114 EAI--SNSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQK 171
+ FL T+AD+ + + L + W R+ +
Sbjct: 69 DKFLGDRPFLAGQQVTLADLMALEELMQP--VALGYELFEGRPRLAAWRGRVEAFLGAEL 126
Query: 172 ALKTWTEVLK 181
+ + +L
Sbjct: 127 CQEAHSIILS 136
|
| >d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class mu GST species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 46.9 bits (111), Expect = 1e-06
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYD 161
+ L KL L+ + S+ + + T D + + N++ +
Sbjct: 44 EQLPGKLRQLSRFLGSRSWFVGDKLTFVDFLAYDVLDQQRMFVP--DCPELQGNLSQFLQ 101
Query: 162 RISKLPQVQKALKT 175
R L ++ +++
Sbjct: 102 RFEALEKISAYMRS 115
|
| >d2gsqa1 a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]
Score = 44.7 bits (105), Expect = 5e-06
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 17/120 (14%)
Query: 70 TKNESA-INQWLEWESVELFPSVLSFFDNP------------KVLPDNLKTKLNVLNEAI 116
T E +++ E ++F V+ P K +L
Sbjct: 5 TSLEKYRVDEITETLQ-DIFNDVVKIKFAPEAAKEAVQQNYEKSCKRLAPFLEGLLVSNG 63
Query: 117 SNS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
F + NS T+AD+ + + L + LL I R+++ P++ LK
Sbjct: 64 GGDGFFVGNSMTLADLHCYVALEVPLKHTP--ELLKDCPKIVALRKRVAECPKIAAYLKK 121
|
| >d1tw9a1 a.45.1.1 (A:78-206) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]} Length = 129 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Heligmosomoides polygyrus [TaxId: 6339]
Score = 44.7 bits (105), Expect = 5e-06
Identities = 16/120 (13%), Positives = 45/120 (37%), Gaps = 20/120 (16%)
Query: 73 ESA-INQWLEWESVELFPSVLSFFDNP-------------KVLPDNLKTKLNVLNEAISN 118
ESA I+ + + + + +++ VL L + + +
Sbjct: 7 ESALIDSLADAYT-DYRAEMKTYYYTALGFMTGDVDKPKTDVLLPARTKFLGFITKFLKK 65
Query: 119 S---FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
+ FL+ + + D+ + V + + + + + +RI + P+++K ++T
Sbjct: 66 NSSGFLVGDKISWVDLLVAEHVADMTNRVP--EYIEGFPEVKAHMERIQQTPRIKKWIET 123
|
| >d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus [TaxId: 6282]} Length = 131 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class pi GST species: Onchocerca volvulus [TaxId: 6282]
Score = 44.7 bits (105), Expect = 6e-06
Identities = 9/79 (11%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 98 PKVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNI 156
+LP L +L + + ++ + + AD ++ + L + +
Sbjct: 41 KSILPGELAKFEKLLATRGNGRNLILGDKISYADYALFEELDVHQILDP--HCLDKFPLL 98
Query: 157 TPWYDRISKLPQVQKALKT 175
++ R+ P++++ +
Sbjct: 99 KVFHQRMKDRPKLKEYCEK 117
|
| >d1k0da1 a.45.1.1 (A:201-351) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 151 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Yeast prion protein ure2p, nitrogen regulation fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (106), Expect = 6e-06
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 103 DNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYD 161
+ T + +L+ + T+AD+ + D + + + W
Sbjct: 82 YSAGTTPMSQSRFFDYPVWLVGDKLTIADLAFVPWNNVV--DRIGINIKIEFPEVYKWTK 139
Query: 162 RISKLPQVQKAL 173
+ + P V KAL
Sbjct: 140 HMMRRPAVIKAL 151
|
| >d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class mu GST species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (105), Expect = 6e-06
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYD 161
L L + ++ + + + + T D + + L ++ N+ +
Sbjct: 44 QALPEMLKLYSQFLGKQPWFLGDKITFVDFIAYDVLERNQVFEP--SCLDAFPNLKDFIS 101
Query: 162 RISKLPQVQKALKT 175
R L ++ +K+
Sbjct: 102 RFEGLEKISAYMKS 115
|
| >d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens) [TaxId: 9606]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class pi GST species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 17/117 (14%), Positives = 44/117 (37%), Gaps = 13/117 (11%)
Query: 69 DTKNESAINQWLEWESVELFPSVLSFFDNP---------KVLPDNLKTKLNVLNEAISNS 119
D + + ++ + +L +S K LP LK +L++
Sbjct: 5 DQQEAALVDMVNDG-VEDLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGK 63
Query: 120 -FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175
F++ + + AD + + + L ++ ++ + R+S P+++ L +
Sbjct: 64 TFIVGDQISFADYNLLDLLLIHEVLAP--GCLDAFPLLSAYVGRLSARPKLKAFLAS 118
|
| >d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma japonicum [TaxId: 6182]} Length = 140 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Schistosoma japonicum [TaxId: 6182]
Score = 43.8 bits (103), Expect = 2e-05
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 103 DNLKTKLNVLNEAISNS-FLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYD 161
L L + + + + +L + T D ++ + +L L ++ + +
Sbjct: 43 SKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLY--MDPMCLDAFPKLVCFKK 100
Query: 162 RISKLPQVQKALKT 175
RI +PQ+ K LK+
Sbjct: 101 RIEAIPQIDKYLKS 114
|
| >d1k3ya1 a.45.1.1 (A:81-222) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} Length = 142 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Human (Homo sapiens), (a1-1) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 2e-05
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 69 DTKNESAINQWLEWESVELFPSVLSFFDNP-------------KVLPDNLKTKLNVLNEA 115
D K + I+ ++E +L +L P K+ + ++
Sbjct: 5 DIKERALIDMYIEG-IADLGEMILLLPVCPPEEKDAKLALIKEKIKNRYFP-AFEKVLKS 62
Query: 116 ISNSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174
+L+ N + ADI + +Y + L+SS+ + RIS LP V+K L+
Sbjct: 63 HGQDYLVGNKLSRADIHLVELLYYVEELDS--SLISSFPLLKALKTRISNLPTVKKFLQ 119
|
| >d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class mu GST species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.3 bits (99), Expect = 4e-05
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYD 161
+ K+ + +E + + + T D + + L ++ N+ +
Sbjct: 44 KTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYDILDQYHIFEP--KCLDAFPNLKDFLA 101
Query: 162 RISKLPQVQKALKT 175
R L ++ +K+
Sbjct: 102 RFEGLKKISAYMKS 115
|
| >d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 42.0 bits (98), Expect = 5e-05
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 99 KVLPDNLKTKLNVLNEAIS--NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNI 156
+ + + L L + + + L T AD+ ++ R LL Y +
Sbjct: 44 TLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYFAGITD-YMNYMVKRDLLEPYPAL 102
Query: 157 TPWYDRISKLPQVQKALKT 175
D ++ L ++ ++
Sbjct: 103 RGVVDAVNALEPIKAWIEK 121
|
| >d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 7e-05
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 103 DNLKTKLNVLNEAISN-SFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYD 161
N + L+ + +LI S T AD C L LL ++ +
Sbjct: 47 YNAPHLMQDLDTYLGGREWLIGMSVTWADFYWEICSTTL--LVFKPDLLDNHPRLVTLRK 104
Query: 162 RISKLPQVQKALKT 175
++ +P V +K
Sbjct: 105 KVQAIPAVANWIKR 118
|
| >d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 126 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Pf GST species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 41.2 bits (96), Expect = 8e-05
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 86 ELFPSVLSFFDNPKVLPDNLKTKLNVLNEAISNSFLIENSTTVADICIWTCVYPLLSDSK 145
E P +F+ K+L N N + + N+ T AD+ ++ + +
Sbjct: 41 EDLPKWSGYFE--KLLKKNHTNNNN------DKYYFVGNNLTYADLAVFNLYDDIETKYP 92
Query: 146 VRPLLSSYTNITPWYDRISKLPQVQKALKT 175
L ++ + + IS LP ++ +
Sbjct: 93 --SSLKNFPLLKAHNEFISNLPNIKNYITN 120
|
| >d1e6ba1 a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class zeta GST species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 16/112 (14%)
Query: 76 INQWLEWESVELFPSVLSFFDNPKVLPDNLKTK-----------LNVLNEAISNS---FL 121
Q + + P N++ K L + + N
Sbjct: 13 NYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKHA 72
Query: 122 IENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173
+ +AD+ + ++ ++ + + + Y + Y+ ++LP Q AL
Sbjct: 73 TGDEIYLADLFLAPQIHGAIN--RFQINMEPYPTLAKCYESYNELPAFQNAL 122
|
| >d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]} Length = 136 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Fasciola hepatica [TaxId: 6192]
Score = 39.2 bits (91), Expect = 5e-04
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYD 161
+L T + + ++ + N +L S + D ++ + + L + N+ +
Sbjct: 43 KDLPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEALDAIRY--LEPHCLDHFPNLQQFMS 100
Query: 162 RISKLPQVQKALKT 175
RI LP ++ +++
Sbjct: 101 RIEALPSIKAYMES 114
|
| >d1fw1a1 a.45.1.1 (A:88-212) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class zeta GST species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.002
Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 13/108 (12%)
Query: 76 INQWLEWESVELFPSVLSFF----------DNPKVLPDNLKTKLNVLNEAISNSFLIENS 125
+ + + + P + L + ++ + + + +
Sbjct: 12 VRMISDLIAGGIQPLQNLSVLKQVGEEMQLTWAQNAITCGFNALEQILQSTAGIYCVGDE 71
Query: 126 TTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173
T+AD+C+ V Y I+ R+ L Q +
Sbjct: 72 VTMADLCLVPQVANAERFKVDLT---PYPTISSINKRLLVLEAFQVSH 116
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1175 | |||
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 100.0 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 100.0 | |
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 100.0 | |
| d1rqga1 | 210 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 99.93 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.91 | |
| d1pfva1 | 162 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 99.89 | |
| d2d5ba1 | 152 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 99.88 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.72 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 99.68 | |
| d1fyja_ | 57 | Multifunctional Glu-Pro-tRNA synthase (EPRS) secon | 99.65 | |
| d1r6ta1 | 54 | N-terminal domain of eukaryotic tryptophanyl-tRNA | 99.63 | |
| d1r6ta1 | 54 | N-terminal domain of eukaryotic tryptophanyl-tRNA | 99.62 | |
| d1fyja_ | 57 | Multifunctional Glu-Pro-tRNA synthase (EPRS) secon | 99.6 | |
| d1d2da_ | 56 | Multifunctional Glu-Pro-tRNA synthase (EPRS) secon | 99.59 | |
| d1d2da_ | 56 | Multifunctional Glu-Pro-tRNA synthase (EPRS) secon | 99.57 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 99.51 | |
| d1ilea1 | 180 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.47 | |
| d1v2aa1 | 125 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.45 | |
| d1ivsa2 | 218 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.44 | |
| d1f2ea1 | 121 | Class beta GST {Sphingomonas paucimobilis [TaxId: | 99.39 | |
| d1axda1 | 129 | Class phi GST {Maize (Zea mays), type I [TaxId: 45 | 99.38 | |
| d1n2aa1 | 121 | Class beta GST {Escherichia coli [TaxId: 562]} | 99.37 | |
| d1jlva1 | 123 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.36 | |
| d1pmta1 | 121 | Class beta GST {Proteus mirabilis [TaxId: 584]} | 99.36 | |
| d1h3na1 | 128 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.36 | |
| d1jlwa1 | 127 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.35 | |
| d1ffya1 | 273 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.34 | |
| d1v2aa2 | 83 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.32 | |
| d1g7oa2 | 75 | Glutaredoxin 2 {Escherichia coli [TaxId: 562]} | 99.32 | |
| d1jlva2 | 84 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.32 | |
| d1r5aa1 | 129 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.31 | |
| d1aw9a1 | 135 | Class phi GST {Maize (Zea mays), type III [TaxId: | 99.31 | |
| d1axda2 | 80 | Class phi GST {Maize (Zea mays), type I [TaxId: 45 | 99.29 | |
| d1aw9a2 | 81 | Class phi GST {Maize (Zea mays), type III [TaxId: | 99.29 | |
| d1ljra2 | 79 | Class theta GST {Human (Homo sapiens) [TaxId: 9606 | 99.29 | |
| d1nhya1 | 144 | GST-like domain of elongation factor 1-gamma {Bake | 99.28 | |
| d1eema2 | 98 | Class omega GST {Human (Homo sapiens) [TaxId: 9606 | 99.28 | |
| d1gnwa2 | 84 | Class phi GST {Mouse-ear cress (Arabidopsis thalia | 99.28 | |
| d1e6ba2 | 80 | Class zeta GST {Mouse-ear cress (Arabidopsis thali | 99.28 | |
| d1r5aa2 | 85 | Class delta GST {Mosquito (Anopheles dirus b), iso | 99.28 | |
| d1pmta2 | 80 | Class beta GST {Proteus mirabilis [TaxId: 584]} | 99.27 | |
| d1n2aa2 | 80 | Class beta GST {Escherichia coli [TaxId: 562]} | 99.27 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 99.27 | |
| d1gnwa1 | 126 | Class phi GST {Mouse-ear cress (Arabidopsis thalia | 99.27 | |
| d1e6ba1 | 133 | Class zeta GST {Mouse-ear cress (Arabidopsis thali | 99.26 | |
| d1f2ea2 | 80 | Class beta GST {Sphingomonas paucimobilis [TaxId: | 99.26 | |
| d1fw1a1 | 125 | Class zeta GST {Human (Homo sapiens) [TaxId: 9606] | 99.25 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 99.24 | |
| d1k0da1 | 151 | Yeast prion protein ure2p, nitrogen regulation fra | 99.24 | |
| d1k0da2 | 92 | Yeast prion protein ure2p, nitrogen regulation fra | 99.22 | |
| d1ljra1 | 165 | Class theta GST {Human (Homo sapiens) [TaxId: 9606 | 99.21 | |
| d1gwca1 | 138 | Class tau GST {Aegilops tauschii, also known as Tr | 99.21 | |
| d2cvda2 | 74 | Class sigma GST {Human (Homo sapiens) [TaxId: 9606 | 99.19 | |
| d2hrkb1 | 118 | GU4 nucleic-binding protein 1, Arc1p {Baker's yeas | 99.19 | |
| d1oyja2 | 84 | Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} | 99.19 | |
| d2cvda1 | 124 | Class sigma GST {Human (Homo sapiens) [TaxId: 9606 | 99.17 | |
| d1fw1a2 | 83 | Class zeta GST {Human (Homo sapiens) [TaxId: 9606] | 99.17 | |
| d2gsqa1 | 127 | Class sigma GST {Squid (Ommastrephes sloani pacifi | 99.14 | |
| d1gula2 | 77 | Class alpha GST {Human (Homo sapiens), (a1-1) [Tax | 99.12 | |
| d1eema1 | 139 | Class omega GST {Human (Homo sapiens) [TaxId: 9606 | 99.11 | |
| d2gsqa2 | 75 | Class sigma GST {Squid (Ommastrephes sloani pacifi | 99.1 | |
| d1tu7a2 | 77 | Class pi GST {Onchocerca volvulus [TaxId: 6282]} | 99.09 | |
| d1m0ua1 | 127 | Class sigma GST {Fruit fly (Drosophila melanogaste | 99.09 | |
| d1b48a1 | 143 | Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax | 99.08 | |
| d2a2ra2 | 77 | Class pi GST {Human (Homo sapiens) [TaxId: 9606]} | 99.08 | |
| d1k3ya1 | 142 | Class alpha GST {Human (Homo sapiens), (a1-1) [Tax | 99.08 | |
| d3gtub1 | 140 | Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | 99.07 | |
| d1m0ua2 | 76 | Class sigma GST {Fruit fly (Drosophila melanogaste | 99.06 | |
| d1b48a2 | 78 | Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax | 99.06 | |
| d1gwca2 | 83 | Class tau GST {Aegilops tauschii, also known as Tr | 99.05 | |
| d1gula1 | 140 | Class alpha GST {Human (Homo sapiens), (a1-1) [Tax | 99.04 | |
| d1k3ya2 | 79 | Class alpha GST {Human (Homo sapiens), (a1-1) [Tax | 99.04 | |
| d2a2ra1 | 132 | Class pi GST {Human (Homo sapiens) [TaxId: 9606]} | 99.04 | |
| d1tw9a1 | 129 | Class sigma GST {Heligmosomoides polygyrus [TaxId: | 99.04 | |
| d2c4ja1 | 133 | Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d2gsta1 | 133 | Class mu GST {Rat (Rattus norvegicus) [TaxId: 1011 | 99.01 | |
| d2c4ja2 | 84 | Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | 99.0 | |
| d1okta2 | 85 | Pf GST {Malarial parasite (Plasmodium falciparum) | 98.98 | |
| d1gsua1 | 133 | Class mu GST {Chicken (Gallus gallus) [TaxId: 9031 | 98.98 | |
| d1k0ma2 | 86 | Chloride intracellular channel 1 (clic1) {Human (H | 98.97 | |
| d1tw9a2 | 77 | Class sigma GST {Heligmosomoides polygyrus [TaxId: | 98.96 | |
| d1nhya2 | 75 | GST-like domain of elongation factor 1-gamma {Bake | 98.94 | |
| d2fnoa2 | 87 | Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac | 98.92 | |
| d1rqga3 | 35 | Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro | 98.92 | |
| d1z9ha2 | 113 | Microsomal prostaglandin E synthase-2 {Crab-eating | 98.92 | |
| d1okta1 | 126 | Pf GST {Malarial parasite (Plasmodium falciparum) | 98.92 | |
| d1fhea2 | 80 | Class alpha GST {Fasciola hepatica [TaxId: 6192]} | 98.91 | |
| d1duga2 | 80 | Class alpha GST {Schistosoma japonicum [TaxId: 618 | 98.89 | |
| d2fhea1 | 136 | Class alpha GST {Fasciola hepatica [TaxId: 6192]} | 98.87 | |
| d1duga1 | 140 | Class alpha GST {Schistosoma japonicum [TaxId: 618 | 98.86 | |
| d1tu7a1 | 131 | Class pi GST {Onchocerca volvulus [TaxId: 6282]} | 98.76 | |
| d1pfva3 | 35 | Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch | 98.74 | |
| d1oyja1 | 145 | Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} | 98.72 | |
| d1oe8a1 | 123 | Class alpha GST {Blood fluke (Schistosoma haematob | 98.7 | |
| d1oe8a2 | 81 | Class alpha GST {Blood fluke (Schistosoma haematob | 98.66 | |
| d1k0ma1 | 149 | Chloride intracellular channel 1 (clic1) {Human (H | 98.2 | |
| d1z9ha1 | 161 | Microsomal prostaglandin E synthase-2 {Crab-eating | 97.85 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 96.8 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 96.73 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 96.68 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.57 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 95.14 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 94.85 | |
| d1iq0a1 | 126 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 94.07 | |
| d1abaa_ | 87 | Glutaredoxin (Grx, thioltransferase) {Bacteriophag | 94.0 | |
| d1f7ua1 | 124 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 90.61 | |
| d1g7oa1 | 140 | Glutaredoxin 2 {Escherichia coli [TaxId: 562]} | 88.59 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 86.92 | |
| d1jila_ | 323 | Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au | 86.76 | |
| d1wika_ | 109 | Thioredoxin-like protein 2 {Mouse (Mus musculus) [ | 86.75 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 85.51 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 84.79 | |
| d1t1va_ | 93 | SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} | 83.39 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 81.6 |
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.4e-66 Score=617.75 Aligned_cols=354 Identities=15% Similarity=0.215 Sum_probs=306.2
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
..+.++++.++|++ |++|++.+.|..... +..++++|+|++|||||||.|||||+++.++ +|+++||+||+||
T Consensus 13 ~f~~~~~~~~~E~~~~~~W~~~~~~~~~~~-----~~~~~~~f~~~~~pPy~nG~lHiGH~~~~~~-~Dv~~Ry~rm~G~ 86 (450)
T d1ffya3 13 DFPMRGGLPNKEPQIQEKWDAEDQYHKALE-----KNKGNETFILHDGPPYANGNLHMGHALNKIL-KDFIVRYKTMQGF 86 (450)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHTTHHHHHHH-----HTTTSCBCCEECCCCBSSSCCCHHHHHHHHH-HHHHHHHHHTTTC
T ss_pred CCCCCCChHHHHHHHHHHHHHCCCcccccc-----ccCCCCcEEEecCCCCCCCchhhhHHHHHHH-HHHHHHHHHhcCC
Confidence 34567899999999 999999999864211 1235678999999999999999999999887 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHHcCCCchhh------------HHHHHHHHHHHHhhccccccccC--CCCCHHHHHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALEEGLTPRQI------------CDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEIVQHL 386 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~~g~~p~~~------------~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~ 386 (1175)
+|+|++|||+||+|||.++++.+.++.++ ++++.+.+++++++||+++||.. +|+++.|.+.++++
T Consensus 87 ~V~~~~G~D~~G~pie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~ 166 (450)
T d1ffya3 87 YAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRI 166 (450)
T ss_dssp BCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHH
T ss_pred ccccccccccCCcHHHHHHHhhCCccccccHHHHhhhcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence 99999999999999999999999888765 45677889999999999999876 69999999999999
Q ss_pred HHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeeccc
Q psy7266 387 FDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQ 466 (1175)
Q Consensus 387 f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~q 466 (1175)
|.+|+++|+||++.++|+|||.|++++++.+++ +|.|+||+.+++.+.++|
T Consensus 167 f~~l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~-----------------------------~~~~~r~~~~~~~~~~~q 217 (450)
T d1ffya3 167 FGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE-----------------------------YPHDWRTKKPVIFRATPQ 217 (450)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE-----------------------------EEEETTTCCBCEEEEEEE
T ss_pred HHHHHHcCCeeccccccccccccCccccccccc-----------------------------ccccccccCCceeecccc
Confidence 999999999999999999999999999998875 577999999999999999
Q ss_pred ccccchhHHHHHHHHHHhcCCCCCc-hHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCC-------------------
Q psy7266 467 LFLELPKIEDKLQSWVSETSDQWSS-NARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFE------------------- 526 (1175)
Q Consensus 467 wfl~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e------------------- 526 (1175)
||+++..+++.+.+.+.... |.+ ..+..+..|+ +++.|||||||++||+|+|++.++
T Consensus 218 wf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~Dw~iSRqr~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
T d1ffya3 218 WFASISKVRQDILDAIENTN--FKVNWGKTRIYNMV-RDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFA 294 (450)
T ss_dssp EEECHHHHHHHHHHHHHTSE--ESSHHHHHHHHHHH-HHCCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHH
T ss_pred ceeccccccccchhhccccc--ccccccceeeeccc-cCccchheeeecccccCcceeecCCCCEecchhhhHHHHHhhh
Confidence 99999999999999998763 554 5677888999 689999999999999999986431
Q ss_pred ---------------------------------Cce--EEecCc---------cccccCCCCCCCCcceEEEEeeccccc
Q psy7266 527 ---------------------------------NKY--SLSSSP---------SLVQFLPTATPQSKITLYQFMAKDNVP 562 (1175)
Q Consensus 527 ---------------------------------~~v--vWfds~---------~~~~~wp~~~~~~~v~~~~~~GkD~i~ 562 (1175)
.+| +|||++ ....+||+| ++++|+||++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~wfds~~~~~~~~~~~~~~~~P~d--------~~~~G~Di~r 366 (450)
T d1ffya3 295 EHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPAD--------MYLEGSDQYR 366 (450)
T ss_dssp HHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBS--------EEEEEGGGGT
T ss_pred hcCccccccccccccccccccccCCCCCcceeeeeeecccccccccccccccccccccCCCc--------ccccCcchhh
Confidence 245 888876 335678887 8999999997
Q ss_pred hhHh-HHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHH
Q psy7266 563 FHSI-MFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQ 640 (1175)
Q Consensus 563 fh~~-~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~ 640 (1175)
||.. ++...+... +..+|++|++|||| +.+|+|||||+||+|+|.|++++ ||+|+|||||++ .+.++|++|+++
T Consensus 367 ~w~~~~~~~~~~~~--~~~Pfk~v~~hG~vld~~G~KMSKS~GN~I~p~dii~~-yGaDalR~~l~s-~~~~~D~~fs~~ 442 (450)
T d1ffya3 367 GWFNSSITTSVATR--GVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSS-TDYLADVRISDE 442 (450)
T ss_dssp THHHHHHHHHHHHH--SSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHT-SCTTSCEECCHH
T ss_pred HHHHHHHHHHHHhc--CCCCcceEEEcceEECCCCCCCCCCCCCCcCHHHHHHH-hCcHHHHHHHHc-CCCCCCcCcCHH
Confidence 6432 233333333 36788999999997 68999999999999999999997 999999999996 567899999999
Q ss_pred HHHHH
Q psy7266 641 DLATK 645 (1175)
Q Consensus 641 ~~~~~ 645 (1175)
.+.+.
T Consensus 443 ~l~~~ 447 (450)
T d1ffya3 443 ILKQT 447 (450)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-63 Score=593.90 Aligned_cols=352 Identities=20% Similarity=0.282 Sum_probs=309.0
Q ss_pred ccCCCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCC
Q psy7266 242 SKSKDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNR 320 (1175)
Q Consensus 242 ~~~~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~ 320 (1175)
++++.||+.+||++ +++|.+.+++.. |+.++++|+||+|||||||+|||||++++++ +|+++||+||+||
T Consensus 2 ~~~~~~~~~~~e~~~~~~w~~~~~~~~--------~~~~~~~f~i~~~pPy~NG~lHlGH~~~yv~-~Dv~~Ry~r~~G~ 72 (425)
T d1ivsa4 2 DLPKAYDPKSVEPKWAEKWAKNPFVAN--------PKSGKPPFVIFMPPPNVTGSLHMGHALDNSL-QDALIRYKRMRGF 72 (425)
T ss_dssp CCCSSCCGGGTHHHHHHHHHSSCCCCC--------TTCCSCEEEEECCCCBSSSCCCHHHHHHHHH-HHHHHHHHHTTTS
T ss_pred CCCCCCChHHHHHHHHHHHHHCCcccC--------CCCCCCcEEEEcCCCCCCCCchhhHHHHHHH-HHHHHHHHHhCCC
Confidence 57889999999999 999998887643 3457889999999999999999999999776 9999999999999
Q ss_pred CcccccccCCcchHHHHHHHH----cCCCchhh------------HHHHHHHHHHHHhhccccccccC--CCCCHHHHHH
Q psy7266 321 NTLYVSGTDEYGTATETKALE----EGLTPRQI------------CDKYFAIHREVYEWFEIDFDYFG--RTSTPQQTEI 382 (1175)
Q Consensus 321 ~v~~~~G~D~~G~~ie~~a~~----~g~~p~~~------------~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~ 382 (1175)
+|+|++|||+||++|+.+|++ +|..+.++ +.++.+.|.+++++||+++|++. +|+++.|.+.
T Consensus 73 ~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~ 152 (425)
T d1ivsa4 73 EAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRA 152 (425)
T ss_dssp EEEEECEEBCCTHHHHHHHHHHHHTTTCCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHH
T ss_pred ceeecCcccCCcchHHHHHHHhhcccCCChHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhh
Confidence 999999999999999998886 45555554 35577889999999999998865 6999999999
Q ss_pred HHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEe
Q psy7266 383 VQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVK 462 (1175)
Q Consensus 383 v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~ 462 (1175)
++++|.+|.++|+||++.++++||+.|+++|+++++. .|++|+..++.+
T Consensus 153 ~~~~~~~l~~~G~iy~~~~~~~~c~~~~~~l~~~~~~-------------------------------~~~~~~~~~~~~ 201 (425)
T d1ivsa4 153 VRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE-------------------------------TCSRCGTPIEYA 201 (425)
T ss_dssp HHHHHHHHHTTSSEEEECCEEEEETTTTEECCGGGEE-------------------------------EETTTCSBCEEE
T ss_pred hHHHHhhhhccCcccccceeecccccccccccccccc-------------------------------cccccCcccccc
Confidence 9999999999999999999999999999999998875 366788899999
Q ss_pred ecccccccchhHHHHHHHHHHhcCCCCC-chHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCC----------------
Q psy7266 463 SSTQLFLELPKIEDKLQSWVSETSDQWS-SNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGF---------------- 525 (1175)
Q Consensus 463 ~~~qwfl~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~---------------- 525 (1175)
..+|||++++++.+.+..+.+.....|. ...+.....|+ ++++||||||++.||+++|.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~-~~l~d~~isr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 280 (425)
T d1ivsa4 202 IFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWL-ENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLE 280 (425)
T ss_dssp ECCEEEECHHHHHHHHHHHHHHTCCEESSSTHHHHHHHHH-HTCCCEECEECCSSSCCCCCEEETTTCCEECCCGGGTTC
T ss_pred cccchhhccchhhccchhhhhcCCcceeccccceeeehhh-hhcCcceeecccccCCccceeeccCcceeecCccccccc
Confidence 9999999999999999999988765554 45677788888 69999999999999999997521
Q ss_pred ---------------CCce--EEecCc--------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHH
Q psy7266 526 ---------------ENKY--SLSSSP--------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVA 574 (1175)
Q Consensus 526 ---------------e~~v--vWfds~--------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~ 574 (1175)
..+| +||||+ .+..|||.+ +|++|+||++||.++|++++++
T Consensus 281 ~~~~~~~~~~~~~~~~~~v~~~~~da~~~~~~~~~~~~~~~~~~~~~p~d--------i~~~G~Di~~~h~~~~~a~~~~ 352 (425)
T d1ivsa4 281 DPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGD--------VLVTGYDILFLWVSRMEVSGYH 352 (425)
T ss_dssp CCCSCTTTCCSCEEECCCEECHHHHHTSCTTTTTTTTTTCSHHHHSCSBS--------CEEEEGGGTTTTHHHHHHHHHH
T ss_pred cccccccccCccccccCccccccccchhHHHHhhCCCcChHHHhCCCCce--------EEEEEehhhhHHHHHHHHHHHH
Confidence 1245 888876 345667776 8999999999999999999988
Q ss_pred hCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHH
Q psy7266 575 AGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLAT 644 (1175)
Q Consensus 575 ~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~ 644 (1175)
.. +..+++++++|||+ +.+|+|||||+||+|++.++++. ||+|+|||||++.+|+++|++|+++.+..
T Consensus 353 ~~-~~~p~~~v~~hg~~L~~~G~KMSKS~Gn~I~~~e~l~~-~g~D~lR~~L~~~~~~~~d~dF~~~~~~~ 421 (425)
T d1ivsa4 353 FM-GERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVER-YGADALRFALIYLATGGQDIRLDLRWLEM 421 (425)
T ss_dssp HS-SSCSBSEEEEECCEECTTSSBCBTTTTBCCCHHHHHHH-HCHHHHHHHHHHHCCTTCCEECCHHHHHH
T ss_pred hc-CCCccceEEEcceEECCCCCCcCCCCCCCcCHHHHHHH-cCchHHHHHHHhcCCCCCCCccCHHHhhh
Confidence 76 34567999999995 68999999999999999999997 99999999999999999999999998864
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.3e-62 Score=589.77 Aligned_cols=357 Identities=17% Similarity=0.207 Sum_probs=301.7
Q ss_pred CCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcc
Q psy7266 245 KDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTL 323 (1175)
Q Consensus 245 ~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~ 323 (1175)
..+|+.++|++ +.+|++.+.|+..... ..++++|+|++|||||||.|||||++++++ +||++||+||+||+|+
T Consensus 6 ~~~~~~~~e~~~~~~w~~~~~~~~~~~~-----~~~~~~f~i~~~pPy~nG~lHiGH~~~~v~-~Dv~~Ry~r~~G~~V~ 79 (452)
T d1ilea3 6 GEPNFPKLEEEVLAFWKREKIFQKSVEN-----RKGGPRYTVYEGPPTANGLPHVGHAQARSY-KDLFPRYKTMRGYYAP 79 (452)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHH-----TTTSCBCCBCCCCCCTTSCCCTTHHHHHHH-HHHHHHHHHHTTCBCC
T ss_pred cCCCHHHHHHHHHHHHHHCCCccCCccc-----cCCCCCEEEecCCCCCCCcchhhhHHHHHH-HHHHHHHHHcCCCcee
Confidence 45788999999 9999999999643211 235688999999999999999999999776 9999999999999999
Q ss_pred cccccCCcchHHHHHHHHcCCCc-----------------hhhHHHHHHHHHHHHhhcccccccc--CCCCCHHHHHHHH
Q psy7266 324 YVSGTDEYGTATETKALEEGLTP-----------------RQICDKYFAIHREVYEWFEIDFDYF--GRTSTPQQTEIVQ 384 (1175)
Q Consensus 324 ~~~G~D~~G~~ie~~a~~~g~~p-----------------~~~~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~~~~v~ 384 (1175)
|++|||+||+||+.+|++.+..+ .+++.+|...+.+++..||++.|+. ++|+++.|.+.++
T Consensus 80 ~v~G~D~hG~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~ 159 (452)
T d1ilea3 80 RRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIW 159 (452)
T ss_dssp CEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHH
T ss_pred ccCCcCCCCHHHHHHHHHhhccccccchhHHHHHHHHHHHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHH
Confidence 99999999999999998877643 3445556778888899999999875 4799999999999
Q ss_pred HHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeec
Q psy7266 385 HLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSS 464 (1175)
Q Consensus 385 ~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~ 464 (1175)
++|.+|+++|+||.+...++||+.|+++++++++++.| |+|+|||++++.+.+
T Consensus 160 ~~f~~l~~~G~iy~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------p~c~~~~~~~~~~~~ 212 (452)
T d1ilea3 160 WSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGY---------------------------PHCWRCSTPLMYYAT 212 (452)
T ss_dssp HHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTE---------------------------EBCSSSCCBCEEEEC
T ss_pred HHHHHHHhcCCcccccccchhhcccccccccccccccC---------------------------CCccCcCCceEEeec
Confidence 99999999999999999999999999999999998765 568899999999999
Q ss_pred ccccccchhHHHHHHHHHHhcCCCCCchHH-HHHHHHhhcCCCcEeeeccCCCCcccCCCCCC-----------------
Q psy7266 465 TQLFLELPKIEDKLQSWVSETSDQWSSNAR-VICKAWLKDGLKPRCITRDLKWGIPVPLPGFE----------------- 526 (1175)
Q Consensus 465 ~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e----------------- 526 (1175)
.|||++++.+++.+..++.... .+|+... ..+..|+ +++.||||||+++||+|+|.+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~-~~l~dw~IsR~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~ 290 (452)
T d1ilea3 213 ESWFIKNTLFKDELIRNNQEIH-WVPPHIKEGRYGEWL-KNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKAR 290 (452)
T ss_dssp CEEEECGGGGHHHHHHHHHHSE-ESSGGGTTTTTHHHH-HTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHH
T ss_pred cchhhhhccchhhhhhhhcccc-cCcchhhhceeeeec-cCCccceeecccccccCCccccccccCcccccchhhhhhhh
Confidence 9999999999999999988764 3565544 4455666 799999999999999999975321
Q ss_pred --------------------------------Cce--EEecCc---------------cccccCCCCCCCCcceEEEEee
Q psy7266 527 --------------------------------NKY--SLSSSP---------------SLVQFLPTATPQSKITLYQFMA 557 (1175)
Q Consensus 527 --------------------------------~~v--vWfds~---------------~~~~~wp~~~~~~~v~~~~~~G 557 (1175)
.+| +||+|+ .+..+||.+ .+++++|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~w~~s~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~g~d 364 (452)
T d1ilea3 291 ATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPAD------FIAEGID 364 (452)
T ss_dssp BSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBS------BEEEEGG
T ss_pred hccccCccccccccccccccccccccccccccccccccccccccchhhhccCccchhhhcccCCcch------hheecCc
Confidence 133 677765 123445655 1244445
Q ss_pred ccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCcc
Q psy7266 558 KDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTS 636 (1175)
Q Consensus 558 kD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~ 636 (1175)
+++.+||+++||++++.. ..+|+++++|||+ +.+|+|||||+||+|+|.|+++. ||+|+|||||++.+|+++|++
T Consensus 365 ~~~~~fh~l~~~~~l~~~---~~~~~~v~~hg~iL~~~G~KMSKS~gn~I~~~dll~~-ygaD~lR~yl~~~~~~~~d~~ 440 (452)
T d1ilea3 365 QTRGWFNSLHQLGVMLFG---SIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYVSAPPEADRR 440 (452)
T ss_dssp GGGTHHHHHHHHHHHHHS---SCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTT-TCHHHHHHHHHHHSCSSSCEE
T ss_pred eechhhHHHHHhHHHHcC---CCCCCeEEEeeEEECCCCcccCCCCCCCcCHHHHHHH-cCcHHHHHHHHhcCCCCCCCC
Confidence 556689999999999864 4568899999997 68999999999999999999996 999999999999999999999
Q ss_pred ccHHHHHHHh
Q psy7266 637 FSWQDLATKN 646 (1175)
Q Consensus 637 f~~~~~~~~~ 646 (1175)
|+++.|.+..
T Consensus 441 Fs~~~~~e~~ 450 (452)
T d1ilea3 441 FGPNLVRETV 450 (452)
T ss_dssp CCHHHHHHHH
T ss_pred cCHHHHhHHh
Confidence 9999997653
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-59 Score=539.20 Aligned_cols=326 Identities=28% Similarity=0.535 Sum_probs=293.4
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREV 360 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~ 360 (1175)
++|+||+|||||||.|||||++++++ +|+++||+|++||+|.|++|+|+||++|+.+|+++|+++.++++++...+.++
T Consensus 2 ~~~~i~~~~P~~nG~lHiGHar~~v~-~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 80 (350)
T d1pfva2 2 KKILVTCALPYANGSIHLGHMLEHIQ-ADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTD 80 (350)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHHH-HHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCCCccccccHHHHH-HHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHH
Confidence 68999999999999999999999766 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCC
Q psy7266 361 YEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 361 ~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
++.|||+++.+..|.++.|.+.++++|.+|+++|++|.+...++||+.|+++|+|+++
T Consensus 81 ~~~l~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~---------------------- 138 (350)
T d1pfva2 81 FAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFV---------------------- 138 (350)
T ss_dssp HHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGT----------------------
T ss_pred HHHcCCCcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCcee----------------------
Confidence 9999999999999999999999999999999999999999999999999999998765
Q ss_pred ccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccC-CCCcc
Q psy7266 441 LINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDL-KWGIP 519 (1175)
Q Consensus 441 ~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~-~WG~p 519 (1175)
.||.+++.+.++||||+|+.+++.+.++++.. .|+++.+.....|+.+++.|||+||++ +||++
T Consensus 139 -------------~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 203 (350)
T d1pfva2 139 -------------VSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG--ALQEQVANKMQEWFESGLQQWDISRDAPYFGFE 203 (350)
T ss_dssp -------------TTCCCCEEEEEEEEEECGGGGHHHHHHHHTTS--CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCB
T ss_pred -------------ccCCCccceecchheeehHHHHHHHHHHhhcC--CCchhhHHHHHHHhhccCCccccccccccCCcc
Confidence 26778888999999999999999999999876 488888888888887899999999987 56888
Q ss_pred cCCCCCCCce--EEecCc------------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCc
Q psy7266 520 VPLPGFENKY--SLSSSP------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQY 579 (1175)
Q Consensus 520 iP~~~~e~~v--vWfds~------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~ 579 (1175)
+|.+ ++.+ +|++++ .|..||..+ ....++|+.|+|+++||+.++++++++.+ .
T Consensus 204 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~G~D~~~~h~~~~~~~~~a~~--~ 276 (350)
T d1pfva2 204 IPNA--PGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKD---STAELYHFIGKDIVYFHSLFWPAMLEGSN--F 276 (350)
T ss_dssp CTTC--TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTT---CCSEEEEEEEGGGHHHHHTHHHHHHHHTT--B
T ss_pred ccCC--CCcccccccccccchhhhhhccccccccchhhhhccccC---CCcceeeccchhhHHHHHhhHHHHhhhcC--C
Confidence 8854 4555 888876 123333333 34567899999999999999999988864 6
Q ss_pred ccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcC-CCCCCccccHHHHHHHhhHHHHH
Q psy7266 580 TKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVR-PENQDTSFSWQDLATKNNSELLN 652 (1175)
Q Consensus 580 ~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~-~~~~D~~f~~~~~~~~~n~~l~~ 652 (1175)
.++.++++||||+.+|+|||||+||+|+|.|+++. ||+|++||||++.. +..+|++|+++.|.+++|++|+|
T Consensus 277 ~~~~~~~~~g~l~~~G~KMSKS~GN~i~~~dll~~-~g~D~lR~~l~s~~~~~~~d~dfs~~~~~~~~N~~~~n 349 (350)
T d1pfva2 277 RKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 349 (350)
T ss_dssp CCCSEEEEECCEEETTBSCCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCC
T ss_pred CccceEEecccEEECCeEccCcCCCCCCHHHHHHH-CCHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHccC
Confidence 78899999999999999999999999999999997 99999999999864 44578999999999999998865
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=4.1e-58 Score=533.79 Aligned_cols=330 Identities=34% Similarity=0.669 Sum_probs=296.1
Q ss_pred CcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHH
Q psy7266 281 NNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREV 360 (1175)
Q Consensus 281 ~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~ 360 (1175)
.+|+|++|||||||.|||||+++.+|.+|+++||+|++||+|+|++|||+||++|+.+|++.|++|.++++.+...+.++
T Consensus 2 ~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~ 81 (361)
T d1rqga2 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT 81 (361)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 57999999999999999999998777689999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCC
Q psy7266 361 YEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQ 440 (1175)
Q Consensus 361 ~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~ 440 (1175)
+..+++.++.+.+|.++.+...++.+|..++++|++|++...++||+.|++++
T Consensus 82 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 134 (361)
T d1rqga2 82 FQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFL--------------------------- 134 (361)
T ss_dssp HHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCC---------------------------
T ss_pred ccccccccccccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceec---------------------------
Confidence 99999999999999999999999999999999999999999999999987763
Q ss_pred ccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCccc
Q psy7266 441 LINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPV 520 (1175)
Q Consensus 441 ~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~pi 520 (1175)
.++|.+||.+++.+..+||||+++.+++.+.+.+... .|.+.......+|+.+++.||||||+++||+++
T Consensus 135 --------~~~~~~~g~~~~~~~~~~~f~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~ 204 (361)
T d1rqga2 135 --------PDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQ--PWKPNVKNMVLSWIEEGLEERAITRDLNWGIPV 204 (361)
T ss_dssp --------CGGGTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSS--CCCHHHHHHHHHHHTTCCCCEECEECCSSSCBC
T ss_pred --------ccccccCCCcccccccceEEEecchhhhhhhhccccc--ccccchhhhhhhccccccccccccccccccccC
Confidence 3468899999999999999999999999999999876 488888777788888899999999999999999
Q ss_pred CCCCCC--Cce--EEecCc------------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCC-
Q psy7266 521 PLPGFE--NKY--SLSSSP------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD- 577 (1175)
Q Consensus 521 P~~~~e--~~v--vWfds~------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~- 577 (1175)
|.|.++ +.+ +|++++ ++..++... ..+...+|++|.|+.++|...+++++++.+.
T Consensus 205 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~ 282 (361)
T d1rqga2 205 PLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNI--DGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKY 282 (361)
T ss_dssp SCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCS--SCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCB
T ss_pred ccccccCCCeEEEeecccccccccccccCcccCCchhHHHHhhhhc--cCCcceEEeccccccccchhhHHHHHHHhhcc
Confidence 998753 334 898886 111111110 1345568999999999999999999988763
Q ss_pred -------CcccCeEEEeeceeecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHHH
Q psy7266 578 -------QYTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSEL 650 (1175)
Q Consensus 578 -------~~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~l 650 (1175)
.+.+|+++++||||+.+|+|||||+||+|+|.|+++. ||+|+|||||++.+|.++|++||++.|..++|++|
T Consensus 283 ~~~~~~~~~~~p~~~~~~g~l~~~G~KMSKSlGN~I~~~d~i~~-yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n~~~ 361 (361)
T d1rqga2 283 KDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 361 (361)
T ss_dssp CSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTT-SCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTT
T ss_pred ccccccccCCCCCEEEEeeeEEeCCEecCCCCCCCCCHHHHHHH-cCcHHHHHHHHhhCCCCCCCCCCHHHHHHHhccCC
Confidence 2467899999999999999999999999999999996 99999999999999999999999999999988875
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.5e-57 Score=549.89 Aligned_cols=352 Identities=20% Similarity=0.344 Sum_probs=286.2
Q ss_pred CCCChHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcc
Q psy7266 245 KDVTSEEIEQT-KVAWTQGSPVPLRTRTAPVLPQPNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTL 323 (1175)
Q Consensus 245 ~~~~~~~iE~~-~~~W~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~ 323 (1175)
+.|+|.+||++ |++|++.++|.... .+.++++|+|++|||||||.||||||++.++ +|+++||+||+|++|+
T Consensus 2 ~~Y~p~~iE~~~~~~W~~~~~~~~~~------~~~~~~~~~i~~~pP~~nG~lHiGH~~~~~~-~D~~~R~~rm~G~~v~ 74 (494)
T d1h3na3 2 EKYNPHAIEAKWQRFWEEKGFMKAKD------LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVL 74 (494)
T ss_dssp CCCCCTTHHHHHHHHHHHHTTTCCCS------SCCTTCEEEEEECCCCSSSCCBHHHHHHHHH-HHHHHHHHHHTTCEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCc------cccCCCCeEEEeCCCCCCCchhhhHHHHHHH-HHHHHHHHHccCCccc
Confidence 46999999999 99999999997542 2347788999999999999999999999887 9999999999999999
Q ss_pred cccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhcccccccc--CCCCCHHHHHHHHHHHHHHHHcCCEEeceE
Q psy7266 324 YVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDYF--GRTSTPQQTEIVQHLFDRVHKAGFTSSASV 401 (1175)
Q Consensus 324 ~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~ 401 (1175)
|++||||||+|||.+|++.+..|.++++++...+++++++||+++||. ++|+|+.|.+.++++|.+|+++|+||++.+
T Consensus 75 ~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~~~ 154 (494)
T d1h3na3 75 HPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKG 154 (494)
T ss_dssp CCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcCCcCcchHHHHHHHHHhCCChHHHHHHHHHHhHHHHHhcCcccCCCCceecCCccccchHHHHHHHhhhCCcEEeeeE
Confidence 999999999999999999999999999999999999999999999984 579999999999999999999999999999
Q ss_pred EEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCc-ccCCCCccEEeecccccccchhHHHHHHH
Q psy7266 402 EQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPR-CKQCSQAPTVKSSTQLFLELPKIEDKLQS 480 (1175)
Q Consensus 402 ~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~-c~r~~~~~~~~~~~qwfl~l~~~~~~l~~ 480 (1175)
+++||+.|+|+|+|.+|+ ++. |..++.+++.+.+++||++++.+.+.+..
T Consensus 155 ~~~~~~~~~t~l~~~ev~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 205 (494)
T d1h3na3 155 LVNWCPKCQTVLANEQVV-----------------------------EGRCWRHEDTPVEKRELEQWYLRITAYAERLLK 205 (494)
T ss_dssp EEEEETTTTEEECGGGEE-----------------------------TTEESSCTTSBCEEEEEEEEEECGGGGHHHHHH
T ss_pred EEEeecCccceecchhcc-----------------------------cCccccccCceEEeeccCchhhhhhcccccccc
Confidence 999999999999999984 122 33456778888999999999999999888
Q ss_pred HHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCC----------------------------------
Q psy7266 481 WVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFE---------------------------------- 526 (1175)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e---------------------------------- 526 (1175)
++... .+++..+.+...|+ +++.||||||++.||+++|++++.
T Consensus 206 ~~~~~--~~~~~~~~~~~~~i-~~l~d~~Isr~~~~~~~i~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~ 282 (494)
T d1h3na3 206 DLEGL--NWPEKVKAMQRAWI-GRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLE 282 (494)
T ss_dssp TTTTC--BSCHHHHHHHHHHH-CSCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGG
T ss_pred ccccc--cccccccccccccc-ccccccccccccccccceEEEeeccceeecccccchhcccccccccccCCCcCCChhH
Confidence 76654 47788889999999 799999999999999999975321
Q ss_pred --------------------Cce--EEecCc-------------------cccccCCCCCCCCcceEEEEeeccccchhH
Q psy7266 527 --------------------NKY--SLSSSP-------------------SLVQFLPTATPQSKITLYQFMAKDNVPFHS 565 (1175)
Q Consensus 527 --------------------~~v--vWfds~-------------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~ 565 (1175)
..+ +||++. .+..++|.+ ....|.++...+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd--------~~~~~~~~~~~~~ 354 (494)
T d1h3na3 283 AHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVD--------QYIGGVEHAVLHL 354 (494)
T ss_dssp GCHHHHEEECTTTCSEEEECCCEECHHHHTTSHHHHTTSTTCSSSSSCHHHHHHHCSBS--------EEECCGGGTTTHH
T ss_pred hCcceeeeecccCCCceEEeceecccceeecchhhhhcccccccccccccccccccCce--------ecccccceeeeee
Confidence 012 455543 111223332 3344545443322
Q ss_pred hH--HHH-HHHHhCC--CcccCeEEEeece--------------------------------------------------
Q psy7266 566 IM--FPA-TLVAAGD--QYTKVNHIMATEY-------------------------------------------------- 590 (1175)
Q Consensus 566 ~~--~pa-~l~~~~~--~~~~p~~i~~~g~-------------------------------------------------- 590 (1175)
.. +.. .....+. ...+++.++.||+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (494)
T d1h3na3 355 LYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHE 434 (494)
T ss_dssp HHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECT
T ss_pred ecccchhhhhhcccccccchhcccccccCcEecCcccccccccccccccCCcceeeeeccccccchhhhhcccccccccC
Confidence 21 111 1122221 1233455555554
Q ss_pred ---e-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHH
Q psy7266 591 ---L-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLAT 644 (1175)
Q Consensus 591 ---l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~ 644 (1175)
| +.+|+|||||+||||+|.++|++ ||||+|||||++++++++|++||++++..
T Consensus 435 ~g~v~d~~g~KMSKSlGNVIdP~~iI~~-YGADalRl~ll~~s~~g~di~~s~~~ieg 491 (494)
T d1h3na3 435 DGTLHLWKPAVMSKSKGNGVMVGPFVKE-QGADIARITILFAAPPENEMVWTEEGVQG 491 (494)
T ss_dssp TSSEEEEEEEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHSCTTSCEEECHHHHHH
T ss_pred CccEEeCCceeCCCCCCCcCCHHHHHHH-hCHHHHHHHHHhcCCcccCCCcChhcCee
Confidence 3 34577999999999999999997 99999999999999999999999999864
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.2e-50 Score=462.12 Aligned_cols=327 Identities=27% Similarity=0.432 Sum_probs=282.9
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
+++|+||+|+|||||+|||||+|++++ +|+++||+|++||+|.|++|+|+||++|+..|.++|++|.+++..+...|++
T Consensus 2 ~~~~~~~~~~PypnG~lHiGH~r~~v~-~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 80 (348)
T d2d5ba2 2 EKVFYVTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKR 80 (348)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHH-HHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCCCCCcccccCHHHHH-HHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHH
Confidence 578999999999999999999999776 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccC
Q psy7266 360 VYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCG 439 (1175)
Q Consensus 360 ~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g 439 (1175)
+++.+||.+|++.++.++.+...++.++..++++|++|.+...+.||+.|++++.+..+.
T Consensus 81 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 140 (348)
T d2d5ba2 81 AWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV-------------------- 140 (348)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB--------------------
T ss_pred HHHhcCccccceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceecccccc--------------------
Confidence 999999999999999999999999999999999999999999999999999988776552
Q ss_pred CccccccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCCCcE---eeeccCC
Q psy7266 440 QLINAIELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPR---CITRDLK 515 (1175)
Q Consensus 440 ~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~wl~~~l~dw---~ISR~~~ 515 (1175)
.+.|..+|...+.....++|+.++.+.+.+.++.......+ ....+.....|...++.|| +.+++..
T Consensus 141 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~ 211 (348)
T d2d5ba2 141 ---------EGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVP 211 (348)
T ss_dssp ---------TTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCC
T ss_pred ---------ccccccCCCceEEecccccccchHhhhhhHHHhhhccccccccccccccccccccccccccccccccccCC
Confidence 45567788888888899999999999999998887664322 2234555666666677765 5566788
Q ss_pred CCcccCCCCCCCce--EEecCc-------------cccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcc
Q psy7266 516 WGIPVPLPGFENKY--SLSSSP-------------SLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYT 580 (1175)
Q Consensus 516 WG~piP~~~~e~~v--vWfds~-------------~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~ 580 (1175)
||++.|.+ ++++ +||++. .+..+++. .++++|.|+..+|..+++++..+.+ ..
T Consensus 212 ~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~d~~~~~~~~~~~~~~~~~--~~ 279 (348)
T d2d5ba2 212 WGIPLPWD--ENHVTFVWFDALLNYVSALDYPEGEAYRTFWPH--------AWHLIGKDILKPHAVFWPTMLKAAG--IP 279 (348)
T ss_dssp SSCEETTE--EEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGG--------EEEEEEGGGHHHHHTHHHHHHHHHT--CC
T ss_pred CCcccccC--CcccccchhccchhhhhhhcCCchhhhccccch--------heeeehhhccchhhhhhhhhccccc--cC
Confidence 99999976 3555 999976 11223333 3899999999999999999877765 45
Q ss_pred cCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHhhHH
Q psy7266 581 KVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATKNNSE 649 (1175)
Q Consensus 581 ~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~~n~~ 649 (1175)
+++++++||++ +.+|+|||||+||+|++.|+++. ||+|+|||||++..|+++|++||++.|.+++|++
T Consensus 280 ~~~~v~~~~~~l~~~G~KMSKS~Gn~i~~~ell~~-~g~D~lR~~l~~~~p~~~d~dFs~~~~~~~~n~~ 348 (348)
T d2d5ba2 280 MYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEK-YGRDALRYYLLREIPYGQDTPVSEEALRTRYEAD 348 (348)
T ss_dssp CCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHH
T ss_pred CCCEEEeCceEEcccCCCCcCCCCcccCHHHHHHH-CCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHcCC
Confidence 66777777775 78999999999999999999996 9999999999998999999999999999988875
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-35 Score=333.22 Aligned_cols=291 Identities=15% Similarity=0.072 Sum_probs=206.8
Q ss_pred CCCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHH
Q psy7266 278 PNENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIH 357 (1175)
Q Consensus 278 ~~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~ 357 (1175)
+++-++||| .|||||.|||||+|++++ +|+++||+|+.|++|.+++|+|+||.+|...|+..|++|.++++++...+
T Consensus 20 ~~~~~~yv~--Gptv~g~~HIGH~R~av~-gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~~~~~~e~~~~~~~~~ 96 (315)
T d1li5a2 20 AGEVGMYVC--GITVYDLCHIGHGRTFVA-FDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEM 96 (315)
T ss_dssp TTEEEEEEC--CCBSSSCCBHHHHHHHHH-HHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEec--CCcCCCCcccchhHHHHH-HHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhhhhccccccccchhhh
Confidence 356677775 469999999999999888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccc
Q psy7266 358 REVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDG 437 (1175)
Q Consensus 358 ~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~ 437 (1175)
.+++..++|..+.+.++.. ++.+.+...+.+|..+|++|.......||.... |+.++ ..+..
T Consensus 97 ~~~~~~~~i~~~~~~~~~~-~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~------~~~~~ 158 (315)
T d1li5a2 97 HKDFDALNILRPDMEPRAT-HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT-----------DPTYG------VLSRQ 158 (315)
T ss_dssp HHHHHHTTCCCCSBCCBGG-GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG-----------CTTTT------TTTTC
T ss_pred hhhHHhcCCCCCcEEEecc-hhhhhhhhHHHHhhccCceeccccceEEeeccc-----------ccccC------ccccc
Confidence 9999999998877665543 577788888999999999997765555553321 11111 11100
Q ss_pred cCCcccc-ccccCCcccCCCCccEEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCC
Q psy7266 438 CGQLINA-IELIQPRCKQCSQAPTVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKW 516 (1175)
Q Consensus 438 ~g~~~~~-~el~~~~c~r~~~~~~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~W 516 (1175)
+...... .......+. ..+. +....+. ....+ .-+...|
T Consensus 159 ~~~~~~~~~~~~~~~~~--~~~~-----~~~~~K~-------------------------------~~~~~--~~~~~~~ 198 (315)
T d1li5a2 159 DLDQLQAGARVDVVDDK--RNPM-----DFVLWKM-------------------------------SKEGE--PSWPSPW 198 (315)
T ss_dssp ----------------C--CSTT-----CEEEEEE-------------------------------CCTTS--CCBCCTT
T ss_pred cccccccCCcccccccc--cChh-----hhhcccc-------------------------------CccCC--ceeccCC
Confidence 0000000 000000000 0000 0000000 00011 1234679
Q ss_pred CcccCCCCCCCce-EEecCccccccCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCC
Q psy7266 517 GIPVPLPGFENKY-SLSSSPSLVQFLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYED 595 (1175)
Q Consensus 517 G~piP~~~~e~~v-vWfds~~~~~~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G 595 (1175)
|+++|.|. ...+ +|++.+. +..+ +++.|.|+.++|...+++++.... +..++..++++|||+.+|
T Consensus 199 g~~~~~~~-~~~~~~w~~~l~----~~~~--------~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~G 264 (315)
T d1li5a2 199 GAGRPGWH-IECSAMNCKQLG----NHFD--------IHGGGSDLMFPHHENEIAQSTCAH-DGQYVNYWMHSGMVMVDR 264 (315)
T ss_dssp CSEEECSS-HHHHHHHHHHHC----SSEE--------EEECBGGGTTTHHHHHHHHHHHHS-SSCCEEEECCBCCEEETT
T ss_pred ceeccccc-chhhhHHHHHcC----Cccc--------ccccccccccccccccchhhhccc-ccccccEEEEEEEEecCC
Confidence 99999774 1223 7766431 1111 677889999999998888777654 345556677789999999
Q ss_pred CcccccCCCccCchhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHH
Q psy7266 596 GKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVRPENQDTSFSWQDLATK 645 (1175)
Q Consensus 596 ~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~~~~~D~~f~~~~~~~~ 645 (1175)
+|||||+||+|+|.|+++. ||+|++||||++ ++..+|++||++.+.+.
T Consensus 265 ~KMSKs~Gn~V~~~dlle~-~g~D~lRy~lls-~~~~s~ldFs~e~l~~a 312 (315)
T d1li5a2 265 EKMSKSLGNFFTVRDVLKY-YDAETVRYFLMS-GHYRSQLNYSEENLKQA 312 (315)
T ss_dssp BCCCGGGTCCCBHHHHHTT-SCHHHHHHHHHS-SCTTSCEEECHHHHHHH
T ss_pred cEecCcCCCcccHHHHHHh-CCHHHHHHHHHc-CCCCCCCCcCHHHHHHH
Confidence 9999999999999999995 999999999998 66778999999988653
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.93 E-value=6.7e-26 Score=240.23 Aligned_cols=166 Identities=28% Similarity=0.522 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy7266 652 NNLGNFINRALSFIEKNYGSTIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWV 730 (1175)
Q Consensus 652 ~~l~n~~~r~~~~~~~~~~~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~ 730 (1175)
|++|||++|+++|+.++|+|.+|.. .+++.|.+++..++.++..+.++|++|+|++|++.|+++++.+|+|++..+||.
T Consensus 2 N~lGNl~~Rv~~~i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~PW~ 81 (210)
T d1rqga1 2 NNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQPWK 81 (210)
T ss_dssp TTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6899999999999999999999864 467899999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCcccc
Q psy7266 731 LFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKI 810 (1175)
Q Consensus 731 l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki 810 (1175)
+.+++ ..++.+++++++++++.+++||+||||++|++||++||.+...+ +-+..++.||+|++|.|||+||
T Consensus 82 l~k~~---~~~~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg~~~~~~------~~~~~~~~g~~i~~~~~LF~ri 152 (210)
T d1rqga1 82 TAKED---KVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKR------WEFRELPAGHKVRKPEILFKKV 152 (210)
T ss_dssp HTTTC---HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSCCC------SSCCCCCTTCBCCCCCCSCCCC
T ss_pred hhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCcccc------hhhhcCcccccCCCCccCcCCC
Confidence 98853 45778999999999999999999999999999999999875332 1124578999999999999999
Q ss_pred chhhhHHHHHHhcCcc
Q psy7266 811 EQAQVDEWKLKYGGQQ 826 (1175)
Q Consensus 811 ~~~~ie~~~~~~~g~~ 826 (1175)
++++|+.+...+.+..
T Consensus 153 e~e~i~~~~~~~~~~~ 168 (210)
T d1rqga1 153 TDDQIIYFILNYMAKG 168 (210)
T ss_dssp CHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHhhhcc
Confidence 9999999988776654
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.91 E-value=1e-26 Score=261.37 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=60.4
Q ss_pred EEEeeccccchhHhHHHHHHHHhC-CCcccCeEEEeeceeecCC--CcccccCCCccCchhhhhcCCCchhHHHHHHhcC
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAG-DQYTKVNHIMATEYLNYED--GKFSKSRGTGVFGNNAKDTGLPADIFRFYLLYVR 629 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~-~~~~~p~~i~~~g~l~~~G--~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~~~ 629 (1175)
++++|+|++.+|..+++++.+... .++.+| .+++||||+++| .|||||+||+|+++|+++. +++|++||||++..
T Consensus 231 ~~~~g~d~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~l~l~ge~~KMSkrkGn~I~~~dll~~-~~~d~~Ry~~l~~~ 308 (317)
T d1irxa2 231 FEPAGKDHLVAGSSYDTGKEIIKEVYGKEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLVRFIYARHR 308 (317)
T ss_dssp BCCEEHHHHSTTSHHHHHHHHHHHHHCCCCC-BCCEECCEEESCC---------CCCCHHHHHTT-SCHHHHHHHHHSSC
T ss_pred EEEecceecccchhhhHhhhhhhhhcCCCCc-EEEEEEEEEECCccccccCCCCccccHHHHHHH-CCHHHHHHHhcCCC
Confidence 689999999999998877644332 134444 457899998865 5999999999999999995 99999999999977
Q ss_pred CCCCCcccc
Q psy7266 630 PENQDTSFS 638 (1175)
Q Consensus 630 ~~~~D~~f~ 638 (1175)
| ..+++|+
T Consensus 309 ~-~~~i~FD 316 (317)
T d1irxa2 309 P-NKEIKID 316 (317)
T ss_dssp T-TSCEEEC
T ss_pred C-CCCcCCC
Confidence 7 4788987
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=6.8e-23 Score=207.27 Aligned_cols=155 Identities=18% Similarity=0.308 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Q psy7266 655 GNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPWVLFKG 734 (1175)
Q Consensus 655 ~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw~l~k~ 734 (1175)
-|+++|+++|+.++|+|.+|.. ..|.+++..+..+...+.++|++|+|++|++.++++++.+|.|++..+||.+.++
T Consensus 2 ~NL~~R~~~~i~k~~~g~vp~~---~~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~i~~~~~~~Nkyi~~~~PWkl~k~ 78 (162)
T d1pfva1 2 VNLASRNAGFINKRFDGVLASE---LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQ 78 (162)
T ss_dssp HHHHHHHHHHHHHHSTTBCCSS---CSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTS
T ss_pred cchHHHHHHHHHHhcCCcCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4899999999999999999863 3577899999999999999999999999999999999999999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccccchhh
Q psy7266 735 SPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRKIEQAQ 814 (1175)
Q Consensus 735 ~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~ki~~~~ 814 (1175)
+. +.+++.+++++++++++.+++||+||||.+|++||++||.+.. + +.+. ....||+|+++.|||+|||+++
T Consensus 79 ~~-~~~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~~~~~-~-----~~~~-~~~~g~~i~~~~pLF~rie~~~ 150 (162)
T d1pfva1 79 EG-RDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTELT-W-----DGIQ-QPLLGHKVNPFKALYNRIDMRQ 150 (162)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHTSCCC-T-----GGGG-SCCCSCBCCCCSCSSCCCCHHH
T ss_pred ch-hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCC-H-----HHhh-cccCcCCCCCCCCCCCCCCHHH
Confidence 43 3557889999999999999999999999999999999998632 2 1222 2335999999999999999999
Q ss_pred hHHHHH
Q psy7266 815 VDEWKL 820 (1175)
Q Consensus 815 ie~~~~ 820 (1175)
|+++.+
T Consensus 151 ie~~~e 156 (162)
T d1pfva1 151 VEALVE 156 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=4.6e-23 Score=206.35 Aligned_cols=151 Identities=21% Similarity=0.277 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy7266 650 LLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPW 729 (1175)
Q Consensus 650 l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw 729 (1175)
|+|++||+++|+++|+.++|+|.+|...... .+..+..+...+.++|++|+|+.|++.++++++.+|+|++..+||
T Consensus 1 LaN~lGNlv~R~~~~~~k~~~g~vP~~~~~~----~~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~N~yi~~~~PW 76 (152)
T d2d5ba1 1 LADDLGNLVQRTRAMLFRFAEGRIPEPVAGE----ELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPW 76 (152)
T ss_dssp CCCCCHHHHHHHHHHHHHHSTTBCCCCCCCG----GGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CcHHHHHHHHHHHHHHHHHCCCcCCCCcchH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999998654322 234567788999999999999999999999999999999999999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCCcccCCCCCCCccccCCCCCCccCCCCCCccc
Q psy7266 730 VLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGASHLKYSLSSSPSLVQFLPTGHKIGTPAPLFRK 809 (1175)
Q Consensus 730 ~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~~~~~~~~~~~~~~~~l~~Gh~i~~p~~LF~k 809 (1175)
.+.++ +.+++.+++++++++++.+++||+||||++|++||++||.+.... ......+..+++|+.++++.|||+|
T Consensus 77 ~l~k~---d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~~~~--~~~~~~~~~~~~~~~~~~~~~LF~r 151 (152)
T d2d5ba1 77 ELFKK---EPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVR--LEEAERWGLAEPRPIPEEAPVLFPK 151 (152)
T ss_dssp HHHHH---CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCSSCC--GGGGGSSCCSCCCBCCSCCCCSSCC
T ss_pred Hhhcc---chHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCccCC--HHHHHhcCCCCCCCCCCCCCCCCCC
Confidence 98775 345678899999999999999999999999999999999975322 1112224567889999999999987
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.5e-17 Score=188.97 Aligned_cols=251 Identities=12% Similarity=0.163 Sum_probs=169.1
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHH-----------------
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALE----------------- 341 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~----------------- 341 (1175)
.+++++|...-|||+|+|||||+|+++| +|+++|.++..||+|......+++|..+...+..
T Consensus 6 ~~kki~vE~~SaNpt~plHvGH~R~aii-Gd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~ 84 (348)
T d1f7ua2 6 ENKKVIIEFSSPNIAKPFHAGHLRSTII-GGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 84 (348)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHH-HHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHH
T ss_pred CCCEEEEEecCCCCCCCcchhhhhhHHH-HHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccccccchh
Confidence 4678999999999999999999999998 9999999999999999999999999987643320
Q ss_pred -------------cCCC-----------------------c------hhhHHHHHHHHHHHHhhccccccccCCCCCHHH
Q psy7266 342 -------------EGLT-----------------------P------RQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQ 379 (1175)
Q Consensus 342 -------------~g~~-----------------------p------~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~ 379 (1175)
.+.. + +.+++...+.+.+++.+|||.||.|...++ .+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es~-~~ 163 (348)
T d1f7ua2 85 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQ-VS 163 (348)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGG-CC
T ss_pred HHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc-cc
Confidence 0000 0 012233446788899999999997764432 34
Q ss_pred HHHHHHHHHHHHHcCCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCcc
Q psy7266 380 TEIVQHLFDRVHKAGFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAP 459 (1175)
Q Consensus 380 ~~~v~~~f~~L~~~G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~ 459 (1175)
......+...|.++|++|..+...+++... +|+. ..+.
T Consensus 164 ~~~~~~v~~~L~~~~~~~~~~ga~~~~~~~---------------------~g~~---------------------~~~~ 201 (348)
T d1f7ua2 164 KESMLKAIDLFKEKGLTHEDKGAVLIDLTK---------------------FNKK---------------------LGKA 201 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTEEEEEGGG---------------------TCTT---------------------TCEE
T ss_pred ccchHHHHHHHHhhccccccCCcccccchh---------------------hccc---------------------cccc
Confidence 445567889999999999988777765331 1110 0011
Q ss_pred EEeecccccccchhHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCceEEecCccccc
Q psy7266 460 TVKSSTQLFLELPKIEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKYSLSSSPSLVQ 539 (1175)
Q Consensus 460 ~~~~~~qwfl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~vvWfds~~~~~ 539 (1175)
++ .++.+.|+..++.+...+.+ +.|
T Consensus 202 vl---------------------~ksDG~~tY~t~DiAy~~~K-------~~~--------------------------- 226 (348)
T d1f7ua2 202 IV---------------------QKSDGTTLYLTRDVGAAMDR-------YEK--------------------------- 226 (348)
T ss_dssp EE---------------------ECTTSCCCHHHHHHHHHHHH-------HHH---------------------------
T ss_pred ee---------------------ccCCCccceecchHHhhhhh-------hhc---------------------------
Confidence 11 11223466666666555443 000
Q ss_pred cCCCCCCCCcceEEEEeeccccchhHhHHHHHHHHhCCCcccCeEEEe--eceeecCCCcccccCCCccCchhhhhc---
Q psy7266 540 FLPTATPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMA--TEYLNYEDGKFSKSRGTGVFGNNAKDT--- 614 (1175)
Q Consensus 540 ~wp~~~~~~~v~~~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~--~g~l~~~G~KMSKS~GN~v~~~d~i~~--- 614 (1175)
|..| .++++.|.||.-.-..++ +.+.++| +.+.+.+.+ +|.+ .||||++||+|+++|+++.
T Consensus 227 -~~~D------~~I~V~g~dq~~~~~~l~-~~l~~lg--~~~~~~~~h~~~g~v----~kMStR~G~~i~l~dll~e~~~ 292 (348)
T d1f7ua2 227 -YHFD------KMIYVIASQQDLHAAQFF-EILKQMG--FEWAKDLQHVNFGMV----QGMSTRKGTVVFLDNILEETKE 292 (348)
T ss_dssp -HCCS------EEEEECCGGGHHHHHHHH-HHHHHTT--CGGGGGEEEECCCCE----ESCCGGGTCCCBHHHHHHHHHH
T ss_pred -cCCC------EEEEecccccchhhhhHH-HHHHHhC--CCcccceeeecCCcc----ccccccCCCceEHHHHHHHHHH
Confidence 1122 347888999753322222 3445554 334443433 3444 3899999999999999862
Q ss_pred ------------------------CCCchhHHHHHHhcCCCCCCccccHHHHH
Q psy7266 615 ------------------------GLPADIFRFYLLYVRPENQDTSFSWQDLA 643 (1175)
Q Consensus 615 ------------------------~~gaDalR~~ll~~~~~~~D~~f~~~~~~ 643 (1175)
.+|.+++||++++..+ ..++.|+|+.+.
T Consensus 293 ~a~~~~~~~~~~~~~~~~~~~ia~~vgv~ai~y~~L~~~~-~~~~~Fd~d~~l 344 (348)
T d1f7ua2 293 KMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKR-INNYEFKWERML 344 (348)
T ss_dssp HHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCT-TCCEECCHHHHH
T ss_pred HHHHHHHhccCcCCChhhHHHHHHHhhHHheehhhhhcCC-CCCCEECHHHhc
Confidence 1678899999999655 479999999875
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=1.2e-16 Score=183.00 Aligned_cols=291 Identities=15% Similarity=0.156 Sum_probs=171.3
Q ss_pred CCCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHH---HcCCC------c---
Q psy7266 279 NENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKAL---EEGLT------P--- 346 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~---~~g~~------p--- 346 (1175)
..++++|...-|||+|++||||+|+++| +|+++|.++..||+|.-.....|+|+++-..+. ..+.. +
T Consensus 5 ~~~~i~vEf~SpN~~kplHvGHlRs~ii-Gd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~ 83 (370)
T d1iq0a2 5 RPGVVLVEHTSVNPNKELHVGHLRNIAL-GDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHF 83 (370)
T ss_dssp EEEEEEEECCCCCTTSCCBHHHHHHHHH-HHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHH
T ss_pred CCCeEEEEecCCCCCCCcchhhhhhHHH-HHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHHHHHhccccccccchhhh
Confidence 4578999999999999999999999998 999999999999999999999999998764321 11111 0
Q ss_pred ---------------------------------hhhHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHHHHHHHHHc
Q psy7266 347 ---------------------------------RQICDKYFAIHREVYEWFEIDFDYFGRTSTPQQTEIVQHLFDRVHKA 393 (1175)
Q Consensus 347 ---------------------------------~~~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~ 393 (1175)
.+..+.+...+...+..||+.||.+...++-.+...+..++..|.+.
T Consensus 84 ~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es~l~~~~~~~~~i~~l~~~ 163 (370)
T d1iq0a2 84 AGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQS 163 (370)
T ss_dssp HHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTS
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccceeeceeeeecccccccchhhhHhhhhhc
Confidence 01112233445677888999999887554444556778889999999
Q ss_pred CCEEeceEEEeeeCCCCcccccceecccCCCccccCCCCCcccccCCccccccccCCcccCCCCccEEeecccccccchh
Q psy7266 394 GFTSSASVEQLHCAQCDRFLADRFVEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRCKQCSQAPTVKSSTQLFLELPK 473 (1175)
Q Consensus 394 G~iy~~~~~~~~c~~~~~~l~d~~V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c~r~~~~~~~~~~~qwfl~l~~ 473 (1175)
|.+|+..... ..|.... +..... .+. ...+.+.+.
T Consensus 164 ~~~~~~~~~~--------------------------~~ga~~~------d~~~~~--~~~-~~~~~vl~k---------- 198 (370)
T d1iq0a2 164 PHVFRPREGK--------------------------YAGALVM------DASPVI--PGL-EDPFFVLLR---------- 198 (370)
T ss_dssp TTEECCSSST--------------------------TTTCEEE------ECTTTS--CSC-SCCEEEEEC----------
T ss_pred cceeeccccc--------------------------cceEEEe------cCcccc--ccc-cCcceeeEe----------
Confidence 9999753110 0000000 000000 000 000011111
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCCcEeeeccCCCCcccCCCCCCCce-EEecCccccccC-CCCCCCCcce
Q psy7266 474 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKY-SLSSSPSLVQFL-PTATPQSKIT 551 (1175)
Q Consensus 474 ~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~dw~ISR~~~WG~piP~~~~e~~v-vWfds~~~~~~w-p~~~~~~~v~ 551 (1175)
..+.+...++.+...+.+.+.-+--.=|. +++.-- .-+ +|- .+...+. ..+ .
T Consensus 199 -----------sDG~~tY~t~DiAy~~~K~~~~~~~~~~~-~~~~~~------~~i~i~~--~d~~~~~~~~d------~ 252 (370)
T d1iq0a2 199 -----------SNGTATYYAKDIAFQFWKMGILEGLRFRP-YENPYY------PGLRTSA--PEGEAYTPKAE------E 252 (370)
T ss_dssp -----------TTSCBCHHHHHHHHHHHHTTSSCCCEEEE-CCCSSC------TTCEEEE--EEEEECCCCCS------E
T ss_pred -----------ccCCceEeccHHHHHhhhcccccccceec-cccCcc------ceeEeec--cccccchhhhh------H
Confidence 11234445555555544422211000011 111100 111 221 1122222 222 4
Q ss_pred EEEEeeccccchhHhHHHHHHHHhCCC-cccCeEEEeeceeecCCCcccccCCCccCchhhhhc----------------
Q psy7266 552 LYQFMAKDNVPFHSIMFPATLVAAGDQ-YTKVNHIMATEYLNYEDGKFSKSRGTGVFGNNAKDT---------------- 614 (1175)
Q Consensus 552 ~~~~~GkD~i~fh~~~~pa~l~~~~~~-~~~p~~i~~~g~l~~~G~KMSKS~GN~v~~~d~i~~---------------- 614 (1175)
+++++|.++-.+...++ +++..+|.+ ...--+.+.+|+|+.+|+||||+.||+|+++|+++.
T Consensus 253 ~iyVvd~~Q~~h~~~v~-~~~~~~g~~~~~~~~~hv~~g~v~~~g~kMStR~G~~v~l~dll~ea~~~a~~~~~~r~~~~ 331 (370)
T d1iq0a2 253 TINVVDVRQSHPQALVR-AALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDH 331 (370)
T ss_dssp EEEEEESSSCCCHHHHH-HHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhccchHHHHHHH-HHHHHhCCCchhhceeeEEEEEEecCCccccccCCCeeEHHHHHHHHHHHHHHHHHhhCCCc
Confidence 58899988874333343 344444421 111134666899999999999999999999999972
Q ss_pred --------CCCchhHHHHHHhcCCCCCCccccHHHHH
Q psy7266 615 --------GLPADIFRFYLLYVRPENQDTSFSWQDLA 643 (1175)
Q Consensus 615 --------~~gaDalR~~ll~~~~~~~D~~f~~~~~~ 643 (1175)
.+|.+++||++++..+ .+|+.|+|+.+.
T Consensus 332 ~~~~~~a~~vgi~avky~~L~~~~-~~~~~Fd~d~~l 367 (370)
T d1iq0a2 332 PDKEEAARMVALGAIRFSMVKTEP-KKQIDFRYQEAL 367 (370)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSCT-TSCEEECHHHHH
T ss_pred hhHHHHHHHhhhhheehhHhhcCC-CCCceECHHHhc
Confidence 1788899999999655 479999999874
|
| >d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.6e-17 Score=128.73 Aligned_cols=55 Identities=29% Similarity=0.368 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhccccccCCC
Q psy7266 1033 VEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATDA 1087 (1175)
Q Consensus 1033 ~~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~~~~~~~~ 1087 (1175)
..+|+++|++||++||+||++||+|++|+++|+.||+||++||++||+||+|+++
T Consensus 2 ~~~L~~~V~~QGd~VR~LK~~ka~k~~i~~aV~~LL~LK~~yk~~tG~d~kp~~~ 56 (57)
T d1fyja_ 2 SLVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYKPGNP 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSCCSCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 4689999999999999999999999999999999999999999999999998764
|
| >d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.4e-17 Score=125.93 Aligned_cols=53 Identities=38% Similarity=0.451 Sum_probs=51.0
Q ss_pred CHHHHHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhcccccc
Q psy7266 1032 SVEELEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAA 1084 (1175)
Q Consensus 1032 ~~~~l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~~~~~ 1084 (1175)
|+.+|+++|++||++||+||+.||+|++||++|++||+||++||++||+||++
T Consensus 2 S~~eL~~~I~~QGd~VR~LKa~ka~K~~id~aV~~LL~LK~~yk~~tG~dyka 54 (54)
T d1r6ta1 2 SLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKA 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhhCCccCC
Confidence 56789999999999999999999999999999999999999999999999974
|
| >d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.2e-16 Score=121.95 Aligned_cols=52 Identities=31% Similarity=0.370 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCC
Q psy7266 1103 VKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTT 1155 (1175)
Q Consensus 1103 ~~~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~ 1155 (1175)
..+|.++|++||++||+||+++ ++|++||++|++||+||++||++||+||++
T Consensus 3 ~~eL~~~I~~QGd~VR~LKa~k-a~K~~id~aV~~LL~LK~~yk~~tG~dyka 54 (54)
T d1r6ta1 3 LLELFNSIATQGELVRSLKAGN-ASKDEIDSAVKMLVSLKMSYKAAAGEDYKA 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHHHHhhCCccCC
Confidence 3469999999999999999998 899999999999999999999999999975
|
| >d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=4.1e-16 Score=121.87 Aligned_cols=54 Identities=33% Similarity=0.358 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCCC
Q psy7266 1103 VKALEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTNN 1157 (1175)
Q Consensus 1103 ~~~~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~~ 1157 (1175)
..+|+++|++||++||+||+++ ++|++|+++|++||+||++||++||+||.|+.
T Consensus 2 ~~~L~~~V~~QGd~VR~LK~~k-a~k~~i~~aV~~LL~LK~~yk~~tG~d~kp~~ 55 (57)
T d1fyja_ 2 SLVLYNRVAVQGDVVRELKAKK-APKEDVDAAVKQLLSLKAEYKEKTGQEYKPGN 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHHSCCSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3579999999999999999998 89999999999999999999999999999864
|
| >d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.59 E-value=2.4e-16 Score=121.99 Aligned_cols=50 Identities=34% Similarity=0.373 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHhhhhhccCCCCCC
Q psy7266 1106 LEAEIEKQAEVVRTLKASAGGDKSIFAADLAKLLSLKQQLSALTGDTGTTN 1156 (1175)
Q Consensus 1106 ~~~~i~~qg~~vr~lk~~~~~~~~~~~~~v~~ll~lk~~~~~~~g~~~~~~ 1156 (1175)
|+++|++||++||+||+++ |+|++||++|++||+||++||++||+||+|+
T Consensus 2 l~e~I~~QGd~VR~LKa~k-a~K~~i~~aV~~LL~LK~~yk~~tG~d~kpG 51 (56)
T d1d2da_ 2 VYDKIAAQGEVVRKLKAEK-APKAKVTEAVECLLSLKAEYKEKTGKEYVPG 51 (56)
T ss_dssp CCHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHCSSSSSSCCCS
T ss_pred HHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 4678999999999999998 8999999999999999999999999999985
|
| >d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: a tRNA synthase domain domain: Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.57 E-value=8.8e-17 Score=124.46 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=48.7
Q ss_pred HHHHHHhhhhhhccccCCCCCcccchHHHHHHHHHHHHHHHHhccccccCC
Q psy7266 1036 LEAAVATQGNLVRQVKSSGVEKSEWQPHVDKLLSLKKQLEAMKSQQRAATD 1086 (1175)
Q Consensus 1036 l~~~i~~qg~~vr~lK~~ka~k~~i~~~v~~Ll~lk~~~k~~~~~~~~~~~ 1086 (1175)
|+++|++||++||+||++||+|++||++|++||+||++||++||+||+|+.
T Consensus 2 l~e~I~~QGd~VR~LKa~ka~K~~i~~aV~~LL~LK~~yk~~tG~d~kpG~ 52 (56)
T d1d2da_ 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTGKEYVPGL 52 (56)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCSSSSSSCCCSS
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCc
Confidence 568999999999999999999999999999999999999999999999863
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=5.1e-14 Score=156.28 Aligned_cols=97 Identities=12% Similarity=0.194 Sum_probs=77.0
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
+||..+|.|||+|||||++++++ ++.+||- ..| .|+.-+|| +++.....+|.+.|.++++|
T Consensus 2 vvtRfaPsPtG~lHiG~~rtal~-n~~~Ak~--~~G---~~iLRidD-------------tD~~R~~~~~~~~I~~dL~w 62 (305)
T d1j09a2 2 VVTRIAPSPTGDPHVGTAYIALF-NYAWARR--NGG---RFIVRIED-------------TDRARYVPGAEERILAALKW 62 (305)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHH-HHHHHHH--TTC---EEEECBCC-------------CCTTSCCTTHHHHHHHHHHH
T ss_pred eEEecCCCCCCcccHHHHHHHHH-HHHHHHH--cCC---EEEEEeCc-------------CCCccCchHHHHHHHHHHHH
Confidence 68999999999999999999887 9999883 334 34444555 45555667899999999999
Q ss_pred ccccccccC-------CCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDYFG-------RTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~~~-------~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
|||++|... -....++.+..++++.+|.++|++|..
T Consensus 63 Lgi~wD~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~C 105 (305)
T d1j09a2 63 LGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRA 105 (305)
T ss_dssp TTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEE
T ss_pred HhcCcccCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeeec
Confidence 999998532 122346899999999999999999974
|
| >d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=4.6e-14 Score=144.37 Aligned_cols=126 Identities=14% Similarity=0.140 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHH-hcC--CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHH
Q psy7266 650 LLNNLGNFINRALSFIEK-NYG--STIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQ 724 (1175)
Q Consensus 650 l~~~l~n~~~r~~~~~~~-~~~--~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~ 724 (1175)
+++++||..+.+..+... .++ ...+...++..|+|++++++.+++.+.++|++|+|+.|+..+++| .++|++|++
T Consensus 1 F~~klWN~~rF~~~~~~~~~~~~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~~~~~f~~a~~~l~~f~~~~l~~~Y~e 80 (180)
T d1ilea1 1 YFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVR 80 (180)
T ss_dssp THHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHH
T ss_pred CCcHHHHHHHHHHHhccccCCCccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhhhhHHHHH
Confidence 356778754433332211 122 233444567899999999999999999999999999999999998 489999999
Q ss_pred hcCcccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCC
Q psy7266 725 TQQPWVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 725 ~~kpw~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~ 778 (1175)
..|++....++... ...+..++..++..+++||+|||||+||+||+.|+..
T Consensus 81 ~~K~~l~~~~~~~~---~~~~~~~l~~il~~~l~llaP~~PfitEEiw~~l~~~ 131 (180)
T d1ilea1 81 RNRRRFWKNEDALD---REAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRS 131 (180)
T ss_dssp HHHHHHHTCTTTSS---TTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTT
T ss_pred hccchhhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99987654332222 2345566789999999999999999999999999765
|
| >d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]
Probab=99.45 E-value=1.4e-13 Score=132.04 Aligned_cols=107 Identities=23% Similarity=0.372 Sum_probs=91.2
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhc-------CCCCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFD-------NPKVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-------~g~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
+||.+|+.|++||.|..+.++|.+..++. ......+.+.+.|+.||.+|+ ++||+|+++|+|||++++.+.+
T Consensus 1 kDp~~RA~v~q~l~f~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~T~ADi~l~~~~~~ 80 (125)
T d1v2aa1 1 KDPKVRSVVNQRLFFDIGTLYKRIIDVIHLVMKKEQPSDEQMEKLKGALDLLEQFVTERAYAAADHLTVADICLLGTVTA 80 (125)
T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTCCCCTTHHHHHHHHHHHHHHHHHHSSSSSSSSCCHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHhCCCCccCCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999998777654 233556788999999999999 9999999999999999999998
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcC-HHHHHHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKL-PQVQKALKTWT 177 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~-P~~~~~l~~~~ 177 (1175)
+.... .....||||.+|++||.++ |.++++.++..
T Consensus 81 ~~~~~---~~~~~~P~l~~w~~r~~~~~P~~~e~~~~~~ 116 (125)
T d1v2aa1 81 LNWLK---HDLEPFPHIRAWLERVRAEMPDYEEFSKQVA 116 (125)
T ss_dssp GGTTT---CCCTTCHHHHHHHHHHHTTSTTHHHHHHHHH
T ss_pred HHHcC---CCcccCHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 64333 3467899999999999875 99999987753
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=1.1e-13 Score=146.15 Aligned_cols=115 Identities=22% Similarity=0.327 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhcCc
Q psy7266 652 NNLGNFINRALSFIEKNYGSTIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNI--SRYCNQYMQTQQP 728 (1175)
Q Consensus 652 ~~l~n~~~r~~~~~~~~~~~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~--~~~~n~yi~~~kp 728 (1175)
|++|| +.+|+..+.++.-+.. ..+..|+||+++++.++..+.++|++|+|+.|++.+++| .++|++|++..++
T Consensus 2 NKlwN----a~rF~~~~~~~~~~~~~~~~~~Dkwil~~l~~~i~~v~~~~~~y~f~~a~~~l~~F~~~~l~d~Y~e~~k~ 77 (218)
T d1ivsa2 2 NKLYN----AARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKP 77 (218)
T ss_dssp HHHHH----HHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred hHHHH----HHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhHHHHHHHHhh
Confidence 45666 6677766665543332 356789999999999999999999999999999999999 4999999999998
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCC
Q psy7266 729 WVLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 729 w~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~ 778 (1175)
+.... . .....++..++..+++||||||||+||+||+.|+..
T Consensus 78 ~~~~~----~----~~~~~~l~~~l~~~l~ll~P~~PfitEeiw~~l~~~ 119 (218)
T d1ivsa2 78 ALKAG----N----AHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTGK 119 (218)
T ss_dssp HHHTT----B----HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHCC
T ss_pred hcccc----c----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 65321 1 113445678899999999999999999999999754
|
| >d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class beta GST species: Sphingomonas paucimobilis [TaxId: 13689]
Probab=99.39 E-value=3e-13 Score=128.88 Aligned_cols=108 Identities=18% Similarity=0.279 Sum_probs=91.1
Q ss_pred HcCC-ChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHH
Q psy7266 65 LSKF-DTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTC 136 (1175)
Q Consensus 65 L~p~-~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~ 136 (1175)
|.|. ++.+|+++++|+.|..+.+.+.+..++.... ...+.+.+.|..||++|. ++||+|+++|+|||++++.
T Consensus 2 L~P~~g~~~Ra~~~~wl~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~TiaDi~~~~~ 81 (121)
T d1f2ea1 2 LAPAEGSLDRYRLLSRLSFLGSEFHKAFVPLFAPATSDEAKAAAAESVKNHLAALDKELAGRDHYAGNAFSVADIYLYVM 81 (121)
T ss_dssp SSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHSCSSSSSSSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhcchHHHHHHHHCcCCCHHHHHHHHHHHHHHHHHHHHHHccCCCchhcCCCHHHHHHHHH
Confidence 3454 5789999999999999999998887776332 224578999999999999 9999999999999999999
Q ss_pred HHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 137 VYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 137 L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.+..... .....||||.+|+++|.++|+|++++++
T Consensus 82 ~~~~~~~~---~~~~~~p~l~~w~~~~~~rpa~~~al~~ 117 (121)
T d1f2ea1 82 LGWPAYVG---IDMAAYPALGAYAGKIAQRPAVGAALKA 117 (121)
T ss_dssp TTSGGGGT---CCGGGCHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHcC---CChhhCHHHHHHHHHHHCCHHHHHHHHh
Confidence 98754332 4567899999999999999999999875
|
| >d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class phi GST species: Maize (Zea mays), type I [TaxId: 4577]
Probab=99.38 E-value=2.1e-13 Score=131.47 Aligned_cols=109 Identities=17% Similarity=0.331 Sum_probs=90.4
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhc--------CCC-------CchHHHHHHHHHHHHHhc-CCcccCCCCCc
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFD--------NPK-------VLPDNLKTKLNVLNEAIS-NSFLIENSTTV 128 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~--------~g~-------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTl 128 (1175)
|.|.++.+++.+++|++|..+.+.|.+..++. .+. ...+.+.+.|+.||.+|+ ++||+|+++|+
T Consensus 3 L~~~d~~erA~v~~Wl~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~Tl 82 (129)
T d1axda1 3 LREGNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKCKYLAGDFLSL 82 (129)
T ss_dssp GTTTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSSSCCH
T ss_pred CCCCCHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHccccccccCcccc
Confidence 45889999999999999999999988776543 111 224567899999999999 99999999999
Q ss_pred cchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 129 ADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 129 ADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
|||++++.+.++..... ......||||.+|+++|.++|+|++++.
T Consensus 83 ADi~~~~~~~~~~~~~~-~~~~~~~P~l~~w~~~~~~rPs~k~~~~ 127 (129)
T d1axda1 83 ADLNHVSVTLCLFATPY-ASVLDAYPHVKAWWSGLMERPSVQKVAA 127 (129)
T ss_dssp HHHTTHHHHHHHTTSGG-GGGGGGCHHHHHHHHHHHHSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHccc-ccchhhCHHHHHHHHHHHcCHHHHHHHh
Confidence 99999999998753322 2345789999999999999999999875
|
| >d1n2aa1 a.45.1.1 (A:81-201) Class beta GST {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class beta GST species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=5.1e-13 Score=127.24 Aligned_cols=108 Identities=22% Similarity=0.379 Sum_probs=92.4
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
|.|.++.+|+++++|+.|..+.+.+.+..++.... ...+.+...|+.||++|+ ++||+|+++|+|||++++.+
T Consensus 3 l~P~~~~~Ra~~~~wl~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~s~ADi~l~~~~ 82 (121)
T d1n2aa1 3 LAPVNSISRYKTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLFTVL 82 (121)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHTHHHHHHHHCSSSCGGGHHHHHHHHHHHHHHHHHHTTTSSCSSSSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhchHHHHHHHHCcCCCHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccHHHHHHHHHH
Confidence 45788889999999999999999998887775221 224578999999999999 99999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
.++.... .....||+|.+|+++|.++|+|++++..
T Consensus 83 ~~~~~~~---~~~~~~p~l~~w~~ri~~rpav~~~l~~ 117 (121)
T d1n2aa1 83 RWAYAVK---LNLEGLEHIAAFMQRMAERPEVQDALSA 117 (121)
T ss_dssp HHHHHTT---CCCTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHcC---CCcccCHHHHHHHHHHHCCHHHHHHHHH
Confidence 9876543 2457899999999999999999999864
|
| >d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]
Probab=99.36 E-value=5.8e-13 Score=127.25 Aligned_cols=105 Identities=18% Similarity=0.336 Sum_probs=86.9
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhc----CCC----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFD----NPK----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g~----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
+||.+|+++++||.|..+.++|.+..++. .+. ...+.+.+.|+.||.+|+ ++||+|+++|+|||++++.+.
T Consensus 1 kDp~~RA~v~qwL~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~S~ADi~l~~~l~ 80 (123)
T d1jlva1 1 KDPQKRAVVNQRLYFDMGTLYQRFADYYYPQIFAKQPANAENEKKMKDAVDFLNTFLDGHKYVAGDSLTIADLTVLATVS 80 (123)
T ss_dssp CSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHTSSCSSSSTTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHccCCCcCCccchhhHHHHHHHHH
Confidence 47889999999999999999998776654 122 234568899999999999 999999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
++.... .....||||.+|++||.++|.+.++...
T Consensus 81 ~~~~~~---~~~~~~p~l~~w~~r~~~~~~~~~~~~~ 114 (123)
T d1jlva1 81 TYDVAG---FELAKYPHVAAWYERTRKEAPGAAINEA 114 (123)
T ss_dssp HHHHTT---CCGGGSHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHcC---CCcccCHHHHHHHHHHHccCchHHHHHH
Confidence 976544 3467899999999999998766666554
|
| >d1pmta1 a.45.1.1 (A:81-201) Class beta GST {Proteus mirabilis [TaxId: 584]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class beta GST species: Proteus mirabilis [TaxId: 584]
Probab=99.36 E-value=5.7e-13 Score=126.90 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=90.7
Q ss_pred cCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHH
Q psy7266 66 SKFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 66 ~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
.|.++.+|+++.+|+.|..+.+.+.+...+.... ...+.+.+.+..||++|+ ++|++|+++|+|||++++.+.
T Consensus 4 ~p~~~~~Ra~~~~wl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~ 83 (121)
T d1pmta1 4 APPKALERYHQIEWLNFLASEVHKGYSPLFSSDTPESYLPVVKNKLKSKFVYINDVLSKQKCVCGDHFTVADAYLFTLSQ 83 (121)
T ss_dssp CCTTSHHHHHHHHHHHHHHHTTHHHHGGGGCSSSCTTTHHHHHHHHHHHHHHHHHHHTTSSBTTBSSCCHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHHHHHhchHHHHHHHHCcCCCHHHHHHHHHHHHHHHHHHHHHHccCCcccccCcCHHHHHHHHHHH
Confidence 4778899999999999999999998877665221 234578999999999999 999999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+..... .....||+|.+|+++|.++|+|++++.+
T Consensus 84 ~~~~~~---~~~~~~p~l~~w~~r~~~rPa~~~al~~ 117 (121)
T d1pmta1 84 WAPHVA---LDLTDLSHLQDYLARIAQRPNVHSALVT 117 (121)
T ss_dssp STGGGT---CCCTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHhc---cccccCHHHHHHHHHHHcCHHHHHHHHH
Confidence 864332 3467899999999999999999999864
|
| >d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=2.8e-12 Score=123.37 Aligned_cols=111 Identities=11% Similarity=0.097 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy7266 650 LLNNLGNFINRALSFIEKNYGSTIPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQPW 729 (1175)
Q Consensus 650 l~~~l~n~~~r~~~~~~~~~~~~~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kpw 729 (1175)
|+|++||++......+.. .....+...++..|+|+++++++++++++++|++|+|+.|+..+|+|.+..+.|......+
T Consensus 1 Flnklw~~v~~~~~~~~~-~~~~~~~~~~~~~dk~~~~~l~~~i~~v~~~~e~~~fn~ai~~l~~f~n~l~~~~~~~~~~ 79 (128)
T d1h3na1 1 FLNRIYRRVAEDREALLE-TSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVT 79 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred CcHHHHHHHHHHHhhccc-cccccCcccCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcccchhhhhhhhH
Confidence 346677665443332221 1222333456789999999999999999999999999999999999987777776543321
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCCC
Q psy7266 730 VLFKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGAS 778 (1175)
Q Consensus 730 ~l~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~~ 778 (1175)
.++.+++..+++||+|||||+||+||+.||.+
T Consensus 80 -----------------~~~~~~l~~ll~ll~P~~P~itEeiw~~l~~~ 111 (128)
T d1h3na1 80 -----------------PVYRTAIRYYLQMLFPFAPHLAEELWHWFWPD 111 (128)
T ss_dssp -----------------HHHHHHHHHHHHHHTTTSHHHHHHHHTTTCSS
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 12356778899999999999999999999854
|
| >d1jlwa1 a.45.1.1 (A:91-217) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-4 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-4 [TaxId: 123217]
Probab=99.35 E-value=8.2e-13 Score=126.93 Aligned_cols=105 Identities=18% Similarity=0.328 Sum_probs=86.6
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhc----CCC------CchHHHHHHHHHHHHHhc-CCccc-CCCCCccchhHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFD----NPK------VLPDNLKTKLNVLNEAIS-NSFLI-ENSTTVADICIWT 135 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g~------~~~~~l~~~L~~Le~~L~-~~fLv-G~~lTlADi~l~~ 135 (1175)
.|+.+|+.+++||.|..+.+.|.+..+++ .+. ...+.+.+.|+.||++|+ ++||+ |+++|+|||++++
T Consensus 1 sDp~~RA~v~qwL~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~la~Gd~~TiADi~~~~ 80 (127)
T d1jlwa1 1 SDPRRRAVVHQRLFFDVAVLYQRFAEYYYPQIFGQKVPVGDPGRLRSMEQALEFLNTFLEGEQYVAGGDDPTIADLSILA 80 (127)
T ss_dssp CSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSTTCCSSCCHHHHHHHHHHHHHHHHHTTTCSSTTCSSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHhccCCceeccCccchhhHHHHH
Confidence 47889999999999999999998776654 111 234578999999999999 99995 9999999999999
Q ss_pred HHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 136 ~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
.+.++.... ...+.||||.+|++||.++|.+.+...+
T Consensus 81 ~~~~~~~~~---~~~~~~P~l~~w~~rl~~~p~~~~~~~~ 117 (127)
T d1jlwa1 81 TIATYEVAG---YDLRRYENVQRWYERTSAIVPGADKNVE 117 (127)
T ss_dssp HHHHHHHTT---CCGGGSHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHcC---CChhhChHHHHHHHHHHccCchHHHHHH
Confidence 999976544 3467899999999999999877765444
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.34 E-value=6.1e-13 Score=145.43 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCC------CCCCCCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhcCcccc
Q psy7266 660 RALSFIEKNYGST------IPEISPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNIS--RYCNQYMQTQQPWVL 731 (1175)
Q Consensus 660 r~~~~~~~~~~~~------~p~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~--~~~n~yi~~~kpw~l 731 (1175)
++++|+..+.++. +|...++..|+|++++++.+...+.++|++|+|+.|++.|++|. .++++|++..|++.+
T Consensus 6 Nt~RFlL~nl~~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~y~~y~f~~~~~~l~~F~~~~ls~~Y~~~~Kdrly 85 (273)
T d1ffya1 6 NTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILY 85 (273)
T ss_dssp HHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhhhccchHHHHhhcccccc
Confidence 3677877776542 44445788999999999999999999999999999999999996 799999999999866
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHcCC
Q psy7266 732 FKGSPEQKSRASTVLGILCQVSYLLSLLLSPYMPSTASTIASQLGA 777 (1175)
Q Consensus 732 ~k~~~~~~~~~~~vl~~~~~~l~~l~~lL~PfmP~~se~i~~~L~~ 777 (1175)
..+. ++. ....+..++..++..++++|+|||||+||+||+.+..
T Consensus 86 ~~~~-ds~-~r~~~~~~l~~il~~l~~~laPilPf~~Eei~~~~~~ 129 (273)
T d1ffya1 86 IEQR-DSH-IRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPH 129 (273)
T ss_dssp TSCT-TCH-HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTT
T ss_pred CCCC-CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5432 122 2345667779999999999999999999999998854
|
| >d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]
Probab=99.32 E-value=8e-13 Score=116.64 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=60.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++|+++|+++|++|+.+.|++..+. +||.|+||+|+ +||.+|+||.||++||.
T Consensus 1 m~LY~~~~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~VP~L~-~~g~~l~eS~aI~~YL~ 72 (83)
T d1v2aa2 1 MDYYYSLISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLV-DNGHVVWESYAIVLYLV 72 (83)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEE-ETTEEEESHHHHHHHHH
T ss_pred CEEECCCCChHHHHHHHHHHHhCCCceEEEEeCCCCcchHHHHHHhhccCCCEEE-EccceeEcHHHHHHHHH
Confidence 8999999999999999999999999999999986522 69999999996 88999999999999996
|
| >d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Glutaredoxin 2 species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=9.3e-13 Score=113.60 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=60.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc----cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR----LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+|+++|++|.++|++|+.+.+.....+ +||.++||+|+.+||.+|+||.+|++||.
T Consensus 1 mkLY~~~~cP~~~rvr~~l~~kgi~~e~~~~~~~~~~~~~~~~p~~~VP~L~~~dg~~i~eS~~I~~yLd 70 (75)
T d1g7oa2 1 MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVGQKQVPILQKDDSRYMPESMDIVHYVD 70 (75)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTTTHHHHHHHSSSCCCEEEETTTEEEECHHHHHHHHH
T ss_pred CEEEccCCCCchHHHHHHHHHhCCCcccccccccchHHHHHhCCCCceEEEEEcCCCEEecHHHHHHHHH
Confidence 8999999999999999999999999999888655422 68999999999889999999999999985
|
| >d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]
Probab=99.32 E-value=1.1e-12 Score=115.92 Aligned_cols=65 Identities=20% Similarity=0.356 Sum_probs=60.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++|+++|+++|++|+.+.|++..++ +||.|+||+|+ +||.+|+||.||++||.
T Consensus 1 mkLY~~~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-d~~~~l~ES~aI~~yL~ 73 (84)
T d1jlva2 1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKINPQHCIPTLV-DNGFALWESRAICTYLA 73 (84)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEE-ETTEEEESHHHHHHHHH
T ss_pred CEEEcCCCCHHHHHHHHHHHHcCCCCEEEEecCCCCccCCHHHHHHhccccCCEEE-ECCEEEEcHHHHHHHHH
Confidence 8999999999999999999999999999999986422 78999999996 78999999999999996
|
| >d1r5aa1 a.45.1.1 (A:87-215) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]
Probab=99.31 E-value=2.2e-12 Score=124.30 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhc----CC----CCchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFD----NP----KVLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~g----~~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
+|+.+|+.|++||.|..+.+++.+..++. .+ ....+.+.+.|..||.+|+ ++||+|+++|+|||++++.+.
T Consensus 1 kD~k~RA~v~q~L~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~SiADi~l~~~~~ 80 (129)
T d1r5aa1 1 KDFRSRAIVDQRLHFDLGTLYQRVVDYYFPTIHLGAHLDQTKKAKLAEALGWFEAMLKQYQWSAANHFTIADIALCVTVS 80 (129)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTSSSSSSSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHccCCCcccCCCcHHHHHHHHHHH
Confidence 36789999999999999999888776654 11 2345678999999999999 999999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCH---HHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLP---QVQKALK 174 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P---~~~~~l~ 174 (1175)
++.... .....||||.+|++||.++| .+.++..
T Consensus 81 ~~~~~~---~~~~~~p~l~~w~~r~~~~~~~~~~~e~n~ 116 (129)
T d1r5aa1 81 QIEAFQ---FDLHPYPRVRAWLLKCKDELEGHGYKEINE 116 (129)
T ss_dssp HHHHTT---CCCTTCHHHHHHHHHHHHHHGGGTHHHHHH
T ss_pred HHHHcC---CChhhChHHHHHHHHHHhcccCccHHHHHH
Confidence 876554 34688999999999999874 4555533
|
| >d1aw9a1 a.45.1.1 (A:83-217) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class phi GST species: Maize (Zea mays), type III [TaxId: 4577]
Probab=99.31 E-value=1.1e-12 Score=127.54 Aligned_cols=110 Identities=21% Similarity=0.353 Sum_probs=90.2
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhc--------CCCC-------chHHHHHHHHHHHHHhc-CCcccCCCCCc
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFD--------NPKV-------LPDNLKTKLNVLNEAIS-NSFLIENSTTV 128 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~--------~g~~-------~~~~l~~~L~~Le~~L~-~~fLvG~~lTl 128 (1175)
|.|.++ +++++++|++|..+.+.+.+..+++ .+.. ..+.+.+.++.||++|+ ++||+|+++|+
T Consensus 4 l~P~~~-~rA~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~sl 82 (135)
T d1aw9a1 4 LLPATA-SAAKLEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVVDKHAEQLAKVLDVYEAHLARNKYLAGDEFTL 82 (135)
T ss_dssp SSCTTS-CHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSBTTBSSCCH
T ss_pred CCCCCH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCcchhhccccc
Confidence 456666 7899999999999999888777553 1221 23467889999999999 99999999999
Q ss_pred cchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 129 ADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 129 ADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
|||++++.+.++..... ......||||.+|+++|.++|+++++++.+
T Consensus 83 ADi~~~~~l~~~~~~~~-~~~~~~~P~l~~w~~~v~~rP~~k~~l~~~ 129 (135)
T d1aw9a1 83 ADANHASYLLYLSKTPK-AGLVAARPHVKAWWEAIVARPAFQKTVAAI 129 (135)
T ss_dssp HHHTTHHHHHHHHTSTT-THHHHTSHHHHHHHHHHHHSHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHcCc-hhhhhhcHHHHHHHHHHHcCHHHHHHHHhC
Confidence 99999999998753332 234688999999999999999999999765
|
| >d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class phi GST species: Maize (Zea mays), type I [TaxId: 4577]
Probab=99.29 E-value=1.2e-12 Score=114.36 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=59.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.|+++++|+++|+++|++|+.+.|++..++ +||.|+||+|+ +||..|+||.||++||+
T Consensus 3 ~~Ly~~~~S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~-~~~~~l~ES~aI~~YL~ 75 (80)
T d1axda2 3 MKLYGAVMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQ-DGDLYLFESRAICKYAA 75 (80)
T ss_dssp EEEESCTTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEE-ETTEEEESHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCCEEEEecCCccchhhHHHHHhhccccCCEEE-ECCEEEECHHHHHHHHH
Confidence 7999999999999999999999999999999876532 78999999996 78899999999999996
|
| >d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class phi GST species: Maize (Zea mays), type III [TaxId: 4577]
Probab=99.29 E-value=1.3e-12 Score=114.67 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=59.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+++++|++|+++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.||++||.
T Consensus 3 m~Ly~~~~sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~~~~l~eS~aI~~YL~ 75 (81)
T d1aw9a2 3 LKLYGMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALV-DGDEVLFESRAINRYIA 75 (81)
T ss_dssp EEEESCTTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEE-ETTEEEESHHHHHHHHH
T ss_pred EEEEeCCCChhHHHHHHHHHhcCCCCEEEEecCCCcchhhHHHHHHhhcCeeEEEE-ECCcEEECHHHHHHHHH
Confidence 799999999999999999999999999999987642 268999999996 78999999999999996
|
| >d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class theta GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.4e-12 Score=112.49 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=60.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+.+.||++++|+++|.++|++|+.+.+++..++ +||.|+||+|+ +||.+|+||.||++||.
T Consensus 3 m~LY~~~~sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~np~g~vP~L~-d~~~~l~ES~aI~~yL~ 75 (79)
T d1ljra2 3 LELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLK-DGDFILTESSAILIYLS 75 (79)
T ss_dssp CEEEECTTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEE-ETTEEEECHHHHHHHHH
T ss_pred EEEeeCCCChHHHHHHHHHHHhCCCCEEEeeeccccccCCHHHHHhhhhcceeEEE-eCCcEEEcHHHHHHHHH
Confidence 7999999999999999999999999999999877532 78999999996 88999999999999996
|
| >d1nhya1 a.45.1.1 (A:76-219) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: GST-like domain of elongation factor 1-gamma species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=7.3e-13 Score=130.30 Aligned_cols=109 Identities=11% Similarity=0.234 Sum_probs=90.7
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhc--CCC---------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHH
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFD--NPK---------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWT 135 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~--~g~---------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~ 135 (1175)
.++.+++++++|+.|.++.+.+.+..+++ .+. .....+.+.|..||++|+ ++||+|+++|+|||++++
T Consensus 13 ~d~~~ra~v~~Wl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~le~~L~~~~~l~Gd~~T~ADi~l~~ 92 (144)
T d1nhya1 13 DDLNAQAQIIRWQSLANSDLCIQIANTIVPLKGGAPYNKKSVDSAMDAVDKIVDIFENRLKNYTYLATENISLADLVAAS 92 (144)
T ss_dssp TCHHHHHHHHHHHHHHHTTTTGGGGGTHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccchHHHHH
Confidence 46789999999999999999998776654 121 234567889999999999 999999999999999999
Q ss_pred HHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 136 ~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.+.++............||||.+|+++|.++|+|+++++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~k~~~~~~ 133 (144)
T d1nhya1 93 IFTRYFESLFGTEWRAQHPAIVRWFNTVRASPFLKDEYKDF 133 (144)
T ss_dssp HHHHHHHHTCCHHHHHHCHHHHHHHHHHHHSTTTGGGCTTC
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCHHHHHHhccc
Confidence 99986544443334678999999999999999999987755
|
| >d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class omega GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=2.8e-12 Score=116.55 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=61.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++++++|.++|++|+.+.+++.+. .+||.|+||+|+.+||.+|+||.+|++||.
T Consensus 20 ~~Ly~~~~sP~~~rv~~~l~~kgi~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~dg~~i~eS~aI~~YL~ 90 (98)
T d1eema2 20 IRIYSMRFCPFAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLD 90 (98)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEEEEBCTTSCCGGGGGTCTTCCSCEEEETTCCEEESHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHhCCCCEEEEecccCCcHHHHhhhccccceeEEeCCCCEEcCHHHHHHHHH
Confidence 689999999999999999999999999999998752 289999999999889999999999999996
|
| >d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class phi GST species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.28 E-value=2.1e-12 Score=114.00 Aligned_cols=65 Identities=20% Similarity=0.337 Sum_probs=59.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++|+++|+++|++|+.+.+++... .+||.|+||+|+ +||.+|+||.||++||.
T Consensus 2 ~kLY~~~~s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~~~~l~ES~aI~~YL~ 74 (84)
T d1gnwa2 2 IKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFE-DGDLKLFESRAITQYIA 74 (84)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEE-ETTEEEECHHHHHHHHH
T ss_pred eEEEeCCCChHHHHHHHHHHHcCCCcEeecccCCcccccHHHHHHHhhcCcceEEE-ECCcEEecHHHHHHHHH
Confidence 799999999999999999999999999999987642 278999999997 78999999999999997
|
| >d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class zeta GST species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.28 E-value=2.8e-12 Score=112.18 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=60.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++||++|.++|++|+.+.+++...+ +||.|+||+|+ +||.+|+||.+|++||.
T Consensus 2 m~Ly~~~~sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~~~~~~~~~p~~~vPvL~-~~~~~l~eS~aI~~yL~ 74 (80)
T d1e6ba2 2 LKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALV-DGDVVINDSFAIIMYLD 74 (80)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEE-ETTEEEESHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHhCCCCEEEEEeccccccccHHHhhcCccccCCEEE-ECCEEEECHHHHHHHHH
Confidence 8999999999999999999999999999999986532 68999999997 78999999999999996
|
| >d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class delta GST species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]
Probab=99.28 E-value=2.4e-12 Score=113.88 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=60.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++|+++|+++|++|+.+.|++..+ .+||.|+||+|+ +||..|+||.||++||+
T Consensus 2 ~iLY~~~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~-~~~~~l~ES~aI~~YL~ 74 (85)
T d1r5aa2 2 TVLYYLPASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMD-DHGLVLWESRVILSYLV 74 (85)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEE-ETTEEEECHHHHHHHHH
T ss_pred EEEEcCCCCHhHHHHHHHHHHcCCCCEEEEecCCCcccCCHHHHHHHhcCCCCEEE-EcccceecHHHHHHHHH
Confidence 689999999999999999999999999999998652 278999999996 89999999999999996
|
| >d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class beta GST species: Proteus mirabilis [TaxId: 584]
Probab=99.27 E-value=3.8e-12 Score=111.35 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=60.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHcCCC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLSKFD 69 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p~~ 69 (1175)
|+||+++.+ ++++++++|+++|++|+.+.|++... .+||.|+||+|+.+||.+|+||.||++||....
T Consensus 1 mkLY~~p~s-~s~~vr~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~ES~aI~~yL~~~~ 77 (80)
T d1pmta2 1 MKLYYTPGS-CSLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLADLK 77 (80)
T ss_dssp CEEEECTTS-TTHHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHTTC
T ss_pred CEEEeCCCC-hHHHHHHHHHHhCCCCEEEEEecCCCcccCCHHHHHhcccccCCceecCCCcEEeCHHHHHHHHHHHC
Confidence 899999976 58999999999999999999987531 278999999998889999999999999997543
|
| >d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class beta GST species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=3.4e-12 Score=111.64 Aligned_cols=67 Identities=27% Similarity=0.267 Sum_probs=59.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHcCC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLSKF 68 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p~ 68 (1175)
|+||+++.++ +++++++|+++|++|+.+.+++... .+||.|+||+|+++||.+|+||.||++||...
T Consensus 1 MkLY~~p~s~-s~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~ES~aI~~yL~~~ 76 (80)
T d1n2aa2 1 MKLFYKPGAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYLADS 76 (80)
T ss_dssp CEEEECTTST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHHT
T ss_pred CEEEeCCCcc-HHHHHHHHHHhCCCCEEEEEcCCCCcccCCHHHHHHhcccceeeEEecCCCEEcCHHHHHHHHHHh
Confidence 8999999775 8999999999999999999876532 27899999999888999999999999999743
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.8e-11 Score=136.74 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=78.3
Q ss_pred CCcEEEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHH
Q psy7266 280 ENNILITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHRE 359 (1175)
Q Consensus 280 ~~~~~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~ 359 (1175)
+..=|+|...|.|||+|||||++++++ +..+||- ..|. |+.=+ +++++.....+|.+.|.+
T Consensus 16 ~~~~v~tRFAPSPTG~LHiG~~rtal~-n~l~Ak~--~~G~---fiLRI-------------EDtD~~R~~~~~~~~I~~ 76 (331)
T d1gtra2 16 KHTTVHTRFPPEPNGYLHIGHAKSICL-NFGIAQD--YKGQ---CNLRF-------------DDTNPVKEDIEYVESIKN 76 (331)
T ss_dssp SCSSCEEEECCCSSSCCBHHHHHHHHH-HHHHHHH--TTCE---EEEEE-------------CCCCGGGCCHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCcccHHHHHHHHH-HHHHHHH--hCCE---EEEEe-------------CcCCCCcccchHHHHHHH
Confidence 344478889999999999999998887 8888875 2333 33333 446777788899999999
Q ss_pred HHhhccccccccC-CCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 360 VYEWFEIDFDYFG-RTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 360 ~~~~lgi~~D~~~-~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
+|+||||.+|.-. +.+ ++.+.-+.++.+|.++|++|..
T Consensus 77 dL~WLGl~wD~~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C 115 (331)
T d1gtra2 77 DVEWLGFHWSGNVRYSS--DYFDQLHAYAIELINKGLAYVD 115 (331)
T ss_dssp HHHHTTCCCSSSCEEGG--GGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhccccccceecc--hHHHHHHHHHHhhhhcCCcccc
Confidence 9999999998543 333 4788889999999999999953
|
| >d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class phi GST species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.27 E-value=2.7e-12 Score=122.87 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=84.8
Q ss_pred CChHHHHHHHHHHHHHhhhchhhhhhhhc-------CCC--------CchHHHHHHHHHHHHHhc-CCcccCCCCCccch
Q psy7266 68 FDTKNESAINQWLEWESVELFPSVLSFFD-------NPK--------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADI 131 (1175)
Q Consensus 68 ~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-------~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi 131 (1175)
+++.+++.+++||+++.+.+.|.+..+++ .|. ...+.+.+.|+.||++|+ ++||+|+++|+|||
T Consensus 6 ~~~~~~a~~~~~m~~e~~~f~p~~~~l~~~~~~~p~~G~~~d~~~v~~~~~~l~~~l~~le~~L~~~~yl~Gd~~TlADi 85 (126)
T d1gnwa1 6 KNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDL 85 (126)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCccccCccccchH
Confidence 57789999999999999998887776543 232 123467899999999999 99999999999999
Q ss_pred hHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHH
Q psy7266 132 CIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKA 172 (1175)
Q Consensus 132 ~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~ 172 (1175)
++++.+.++..... ......||||.+|+++|.++|+++++
T Consensus 86 ~~~~~l~~~~~~~~-~~~~~~~P~l~~W~~rl~~RPs~kkv 125 (126)
T d1gnwa1 86 HHIPAIQYLLGTPT-KKLFTERPRVNEWVAEITKRPASEKV 125 (126)
T ss_dssp TTHHHHHHHTTSGG-GHHHHTSHHHHHHHHHHHSSHHHHTT
T ss_pred HHHHHHHHHHHcCc-ccccccCHHHHHHHHHHHcCHHHHhh
Confidence 99999998643322 22357899999999999999999864
|
| >d1e6ba1 a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class zeta GST species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.26 E-value=5.3e-12 Score=122.20 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=83.5
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhc------CC-----CCchHHHHHHHHHHHHHhc---CCcccCCCCCccc
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFD------NP-----KVLPDNLKTKLNVLNEAIS---NSFLIENSTTVAD 130 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~------~g-----~~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlAD 130 (1175)
|.|.|+.+|+.+++|+.|..+.+.|.....+. .+ ......+.+.+..||..|. ++|++|+++|+||
T Consensus 2 LlP~Dp~~RA~vr~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lE~~L~~~~~~~~~Gd~~slAD 81 (133)
T d1e6ba1 2 LLPRDLHKRAVNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKHATGDEIYLAD 81 (133)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHTTCC-------------------CCCCCHHHHHHHHHHHHHHTTSCSSBTTBSSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCcCcchhHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeeCCcCcchH
Confidence 56899999999999999999999885433222 11 1224568889999999998 4799999999999
Q ss_pred hhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 131 ICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 131 i~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
|++++.+.++..... .....||||.+|++||.++|+|+++.-
T Consensus 82 i~l~~~~~~~~~~~~--~d~~~~P~l~aw~~r~~~rPa~~~a~p 123 (133)
T d1e6ba1 82 LFLAPQIHGAINRFQ--INMEPYPTLAKCYESYNELPAFQNALP 123 (133)
T ss_dssp HHHHHHHHHHHHHHC--CCCTTCHHHHHHHHHHTTCHHHHHHSG
T ss_pred HHHHHHHHHHHHHhh--hhhccCcHHHHHHHHHHCCHHHHHhCc
Confidence 999999877543322 356889999999999999999998753
|
| >d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class beta GST species: Sphingomonas paucimobilis [TaxId: 13689]
Probab=99.26 E-value=3.8e-12 Score=111.28 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=58.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHcC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLSK 67 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p 67 (1175)
|+||+.+.+ +++++|++|+++|++|+.+.+++... .+||.|+||+|+.+||.+|+||.||++||..
T Consensus 1 mkLY~~p~s-~s~~v~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~d~g~~l~ES~aI~~yL~~ 75 (80)
T d1f2ea2 1 MKLFISPGA-CSLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYIAD 75 (80)
T ss_dssp CEEEECTTS-TTHHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHH
T ss_pred CEEecCCCc-hHHHHHHHHHHcCCCCEEEEEecCCCcccCCHHHHHHhhccccceEEECCCeEEecHHHHHHHHHH
Confidence 899998876 58999999999999999999987531 1689999999988899999999999999973
|
| >d1fw1a1 a.45.1.1 (A:88-212) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class zeta GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.4e-12 Score=123.15 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=86.5
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhc--CC-----CCchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHH
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFD--NP-----KVLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIW 134 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~--~g-----~~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~ 134 (1175)
|.|.++.+|+++++|+.|..+.+.+.+...+. .. ......+.+.+..+|.+|. ++|++|+++|+|||+++
T Consensus 1 LlP~dp~~RA~v~~w~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~Gd~~tlADi~l~ 80 (125)
T d1fw1a1 1 LLPQDPKKRASVRMISDLIAGGIQPLQNLSVLKQVGEEMQLTWAQNAITCGFNALEQILQSTAGIYCVGDEVTMADLCLV 80 (125)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHTGGGGCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHBSSSSSBTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCeecCCCcchHHHHHH
Confidence 56899999999999999999999886544332 11 1223456888999999997 57999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
+.+.++.... .....||||.+|++||.++|+|++++
T Consensus 81 ~~~~~~~~~~---~~~~~~P~l~aw~~r~~~rPa~~~a~ 116 (125)
T d1fw1a1 81 PQVANAERFK---VDLTPYPTISSINKRLLVLEAFQVSH 116 (125)
T ss_dssp HHHHHHHHTT---CCCTTCHHHHHHHHHHHTSGGGTTTC
T ss_pred HHHHHHHHhh---hhhHhHHHHHHHHHHHhcCHHHHHhC
Confidence 9999976543 35678999999999999999998764
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.4e-11 Score=134.98 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=74.9
Q ss_pred EEEccCCCCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhh
Q psy7266 284 LITSALPYVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEW 363 (1175)
Q Consensus 284 ~i~~~~Py~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 363 (1175)
|||...|.|||+|||||++++++ +..+||-. .| .|+.=+|| +++.....+|.+.|.++|+|
T Consensus 3 ~~tRFAPsPtG~lHiG~~rtal~-n~~~Ak~~--~G---~~iLRieD-------------tD~~R~~~~~~~~I~~dL~w 63 (286)
T d1nzja_ 3 YIGRFAPSPSGELHFGSLIAALG-SYLQARAR--QG---RWLVRIED-------------IDPPREVPGAAETILRQLEH 63 (286)
T ss_dssp CEEEECCCTTSCCCHHHHHHHHH-HHHHHHHT--TC---EEEEEECC-------------SCGGGSCTTHHHHHHHHHHH
T ss_pred ceEeeCcCCCCcccHHHHHHHHH-HHHHHHHh--CC---EEEEEeCC-------------CCCCcCCHHHHHHHHHHHHH
Confidence 68889999999999999998777 88888742 34 34444544 56666667899999999999
Q ss_pred ccccccccC-CCCCHHHHHHHHHHHHHHHHcCCEEec
Q psy7266 364 FEIDFDYFG-RTSTPQQTEIVQHLFDRVHKAGFTSSA 399 (1175)
Q Consensus 364 lgi~~D~~~-~T~~~~~~~~v~~~f~~L~~~G~iy~~ 399 (1175)
||+.+|.-. +.+ ++.+..++++.+|.++|++|..
T Consensus 64 lgl~~d~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~C 98 (286)
T d1nzja_ 64 YGLHWDGDVLWQS--QRHDAYREALAWLHEQGLSYYC 98 (286)
T ss_dssp TTCCCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhccccccchhH--HHHHHHHHHHHHHHHcCCcccc
Confidence 999999633 333 4778889999999999999963
|
| >d1k0da1 a.45.1.1 (A:201-351) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Yeast prion protein ure2p, nitrogen regulation fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=2.1e-12 Score=128.06 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=74.4
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhc----C---------------------------------------CCCc
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFD----N---------------------------------------PKVL 101 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~----~---------------------------------------g~~~ 101 (1175)
|.|.++.+++.+++|+.|..+.+.|.+....+ . ....
T Consensus 1 L~P~d~~era~v~~WL~~~~~~l~P~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (151)
T d1k0da1 1 LWSDDLADQSQINAWLFFQTSGHAPMIGQALHFRYFHSQKIASAVERYTDEVRRVYGVVEMALAERREALVMELDTENAA 80 (151)
T ss_dssp TSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCCCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhccccccccccccchHHHHHH
Confidence 56899999999999999999999887654322 0 0122
Q ss_pred hHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHH
Q psy7266 102 PDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKAL 173 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l 173 (1175)
...+...+..+|.+|. ++||+|+++|+|||++++.+.+...... .....||||.+|++||.++|+|++++
T Consensus 81 ~~~~~~~~~~l~~~L~~~~~l~Gd~~TiADi~~~~~~~~~~~~~~--~~~~~~P~v~~w~~r~~~rPav~kal 151 (151)
T d1k0da1 81 AYSAGTTPMSQSRFFDYPVWLVGDKLTIADLAFVPWNNVVDRIGI--NIKIEFPEVYKWTKHMMRRPAVIKAL 151 (151)
T ss_dssp --------------CCCCCCSSTTSCCHHHHTTHHHHTTGGGGTC--CHHHHCHHHHHHHHHHHTCHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCeecCCcccHHHHHHHHHHHHHHHcCC--CccccCHHHHHHHHHHHhCHHHHhHC
Confidence 3345677888999999 9999999999999999999987643332 23467999999999999999999874
|
| >d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Yeast prion protein ure2p, nitrogen regulation fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=8.3e-12 Score=112.21 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=60.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc--------cCCCCcccEEEe--CCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR--------LLLSKTVPVLEL--DDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~--------~~P~g~vP~L~~--~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||++++|+++|+++|++|+.+.+++...+ +||.|+||+|+. .||.+|+||.||++||.
T Consensus 6 ~tLY~~~~sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~~~~l~ES~aI~~YL~ 81 (92)
T d1k0da2 6 YTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILLHLV 81 (92)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHHHH
T ss_pred eEEeeCCCCccHHHHHHHHHHcCCCCEEEEeeccCCcccCHHHHHHhhccccceeEEecccceEEcCHHHHHHHHH
Confidence 5899999999999999999999999999999986532 789999999985 48999999999999996
|
| >d1ljra1 a.45.1.1 (A:80-244) Class theta GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class theta GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.4e-11 Score=123.76 Aligned_cols=116 Identities=15% Similarity=0.200 Sum_probs=89.2
Q ss_pred HHcCCChHHHHHHHHHHHHHhhhchhhhhhhhc-------CCC-C-------chHHHHHHHHHHHHH-hc-CCcccCCCC
Q psy7266 64 YLSKFDTKNESAINQWLEWESVELFPSVLSFFD-------NPK-V-------LPDNLKTKLNVLNEA-IS-NSFLIENST 126 (1175)
Q Consensus 64 YL~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~-------~g~-~-------~~~~l~~~L~~Le~~-L~-~~fLvG~~l 126 (1175)
+++|.|+.+|+.|++|+.|..+.+.+.+..++. .|. . ..+.+...|..||+. |+ ++||+|+++
T Consensus 4 h~YP~D~~~RA~Vd~wl~w~~~~l~~~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~~~~l~~le~~~L~~~~yl~Gd~~ 83 (165)
T d1ljra1 4 HWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQV 83 (165)
T ss_dssp GGSCCSHHHHHHHHHHHHHHHHHTTTTSSHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTTSSSSBTTBSSC
T ss_pred CCCCcCHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCc
Confidence 467999999999999999999988887655443 222 1 233567788888654 77 999999999
Q ss_pred CccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcC---HHHHHHHHHHHHHhc
Q psy7266 127 TVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKL---PQVQKALKTWTEVLK 181 (1175)
Q Consensus 127 TlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~---P~~~~~l~~~~~~~k 181 (1175)
|+|||++++.+.++..... ...+.||||.+|++||.++ +.++++++.+..+.+
T Consensus 84 SlADi~~~~~l~~~~~~~~--~~~~~yP~l~aW~~r~~a~~~~~~~~e~~~~~~~~~~ 139 (165)
T d1ljra1 84 TLADLMALEELMQPVALGY--ELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILE 139 (165)
T ss_dssp CHHHHHHHHHHHHHHHTTC--CTTTTCHHHHHHHHHHHHHHCHHHHHHHHTHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHhCC--CCcccCHHHHHHHHHHHhhhCcchHHHHHHHHHHHHH
Confidence 9999999999998765433 3457899999999999987 456677766644444
|
| >d1gwca1 a.45.1.1 (A:87-224) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class tau GST species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]
Probab=99.21 E-value=1.2e-11 Score=120.21 Aligned_cols=111 Identities=12% Similarity=0.141 Sum_probs=89.7
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC---------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPK---------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~---------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|.|.||.+|++++.|++|.++.+.+.+..++.... .....+...+..|+++|. ++|++|+++|+|||+++
T Consensus 1 LlP~Dp~~RA~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~Gd~~slaDi~l~ 80 (138)
T d1gwca1 1 LLPADPYERAIARFWVAYVDDKLVAPWRQWLRGKTEEEKSEGKKQAFAAVGVLEGALRECSKGGGFFGGDGVGLVDVALG 80 (138)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCBTTBTSCCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeccCCCcchhhHHH
Confidence 56899999999999999999999998877765322 123356777888888888 99999999999999999
Q ss_pred HHHHHHhh----CCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 135 TCVYPLLS----DSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 135 ~~L~~~~~----~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.+.++.. ..........||+|.+|+++|.++|+|++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~rPav~~~~p~ 125 (138)
T d1gwca1 81 GVLSWMKVTEALSGDKIFDAAKTPLLAAWVERFIELDAAKAALPD 125 (138)
T ss_dssp TTHHHHHHHHHHHSCCTTCTTTCHHHHHHHHHHHHSHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCcchhhHhhHHHHHHHHHHHHcCHHHHHHCCC
Confidence 99988641 122234567899999999999999999998643
|
| >d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class sigma GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.3e-11 Score=105.94 Aligned_cols=67 Identities=19% Similarity=0.152 Sum_probs=60.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----ccCCCCcccEEEeCCCcEEeCHHHHHHHHcCC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----RLLLSKTVPVLELDDGSQLFSANQSCLYLSKF 68 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~p~ 68 (1175)
++||+++.+++++++|++|.+.|++|+.+.++.... ..+|+|+||+|+ +||..|+||.||++||+.+
T Consensus 3 ~kL~yf~~~~~~~~vRl~L~~~gi~~e~~~~~~~~~~~~~~~~p~g~vP~L~-~~g~~l~qS~AI~~yLar~ 73 (74)
T d2cvda2 3 YKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILE-VDGLTLHQSLAIARYLTKN 73 (74)
T ss_dssp EEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGGHHHHHTTSTTSCSCEEE-ETTEEEECHHHHHHHHHTT
T ss_pred EEEEEcCCcHHHHHHHHHHHHcCCCCEecccccccchhhcccCCCCCcCEEE-ECCEEEEcHHHHHHHHccc
Confidence 589999999999999999999999999998887652 267999999996 7999999999999999743
|
| >d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Arc1p N-terminal domain-like domain: GU4 nucleic-binding protein 1, Arc1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=4.3e-13 Score=125.06 Aligned_cols=104 Identities=22% Similarity=0.423 Sum_probs=83.9
Q ss_pred CCcEEeCHHHHHHHHcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCCchHHHHHHHHHHHHHhc-CCcccCC-CCCc
Q psy7266 51 DGSQLFSANQSCLYLSKFDTKNESAINQWLEWESVELFPSVLSFFDNPKVLPDNLKTKLNVLNEAIS-NSFLIEN-STTV 128 (1175)
Q Consensus 51 dG~~l~eS~aI~~YL~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~~~~l~~~L~~Le~~L~-~~fLvG~-~lTl 128 (1175)
|+.++|||.+|.+|+..-++.+.+++.+|+.+..+. ++.+.|+.||.+|. ++|++|+ .+|+
T Consensus 2 d~~~~fes~a~~~Y~~~~t~~~~a~~~qw~~~~~~~-----------------~~~~~L~~Ln~~L~~~~~l~g~~~~T~ 64 (118)
T d2hrkb1 2 DLVTKFESLIISKYPVSFTKEQSAQAAQWESVLKSG-----------------QIQPHLDQLNLVLRDNTFIVSTLYPTS 64 (118)
T ss_dssp HHHHHHHTSGGGGCCCCCCHHHHHHHHHHHHHHHHT-----------------CTGGGHHHHHHHHHHCSSTTSCSSCCH
T ss_pred cHHHHhhcchhhhhhhccCchHHHHHHHHHHHHHhh-----------------HHHHHHHHHHHHHccCCeEeeCCcCCH
Confidence 446789999999999988899999999999976531 23456999999999 9999996 7999
Q ss_pred cchhHHHHHHHHhhCC-----CCCCCcccchhHHHHHHHHhcCHHHHH
Q psy7266 129 ADICIWTCVYPLLSDS-----KVRPLLSSYTNITPWYDRISKLPQVQK 171 (1175)
Q Consensus 129 ADi~l~~~L~~~~~~~-----~~~~~~~~~p~L~~W~~rl~~~P~~~~ 171 (1175)
|||++|+.|.++.... ........||||.||+++|.++|.+.+
T Consensus 65 ADi~~f~~l~~~~~~~~~~~k~~~~~l~~yphI~RW~~~I~~lp~v~~ 112 (118)
T d2hrkb1 65 TDVHVFEVALPLIKDLVASSKDVKSTYTTYRHILRWIDYMQNLLEVSS 112 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSTTHHHHHSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccccHHHHHHHHHHHhcccCCc
Confidence 9999999998765221 111234589999999999999887654
|
| >d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class tau GST species: Rice (Oryza sativa) [TaxId: 4530]
Probab=99.19 E-value=1.2e-11 Score=108.91 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=59.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCC-CcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLS-KTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~-g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||++..||+++++|++|.++|++|+.+.+++.... +||. |+||+|+ +||.+|+||.+|++||.
T Consensus 6 l~Ly~~~~Sp~~~rvr~~L~~kgi~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~-~~g~~l~eS~~I~~YL~ 76 (84)
T d1oyja2 6 LVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLL-HAGRPVSESLVILQYLD 76 (84)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHSTTTCCSCEEE-ETTEEEESHHHHHHHHH
T ss_pred eEEEcCCCChHHHHHHHHHHHcCCCcEEEEEccCcCCHHHHhhCCCcCcccEEE-ECCceEEcHHHHHHHHH
Confidence 6899999999999999999999999999999986532 7895 8999995 89999999999999996
|
| >d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.7e-11 Score=116.74 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=83.4
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC--------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHH
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPK--------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWT 135 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~ 135 (1175)
|+|+++.+++++++|++.....+.. +......+. .....+.+.|+.||++|+ ++|++|+++|+|||++++
T Consensus 2 L~Gk~~~E~a~vd~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~G~~~T~aDi~l~~ 80 (124)
T d2cvda1 2 LAGNTEMEQCHVDAIVDTLDDFMSC-FPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGMSVTWADFYWEI 80 (124)
T ss_dssp TSCSSHHHHHHHHHHHHHHHHHHHT-SCTTCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCSSSSTTSCCHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHhh-hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcCcHHHHHHHH
Confidence 5688999999999999876643222 111111111 112356778999999999 999999999999999999
Q ss_pred HHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 136 CVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 136 ~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
.+.++..... .....||+|.+|+++|.++|.+++++++
T Consensus 81 ~l~~~~~~~~--~~~~~~P~L~~~~~rv~~~P~vk~yl~~ 118 (124)
T d2cvda1 81 CSTTLLVFKP--DLLDNHPRLVTLRKKVQAIPAVANWIKR 118 (124)
T ss_dssp HHHHHHHHCT--TTTTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHhhh--hhhhhhHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999764443 4567899999999999999999999965
|
| >d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class zeta GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.3e-11 Score=107.02 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=58.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--c--------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--A--------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--~--------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.||+++.|++|++||++|.++|++|+.+.|++.. + .+||.|+||+|+ +||.+|+||.||++||.
T Consensus 2 piLY~~~~S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~nP~g~vP~L~-~~g~~i~eS~aI~~yL~ 76 (83)
T d1fw1a2 2 PILYSYFRSSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALNPMKQVPTLK-IDGITIHQSLAIIEYLE 76 (83)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHCTTCCSCEEE-ETTEEEESHHHHHHHHH
T ss_pred CEEEcCCCChHHHHHHHHHHHhCCCCEEEeccccccccccCCHHHHHhccCCccCEEE-ECCEEEecHHHHHHHHH
Confidence 47999999999999999999999999999998743 1 168999999997 68999999999999996
|
| >d2gsqa1 a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]
Probab=99.14 E-value=5.8e-11 Score=113.37 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=79.4
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCC-------chHHHHHHHHHHHHHh----c-CCcccCCCCCccchh
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPKV-------LPDNLKTKLNVLNEAI----S-NSFLIENSTTVADIC 132 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~-------~~~~l~~~L~~Le~~L----~-~~fLvG~~lTlADi~ 132 (1175)
|.|.++.+++++++|+++....+.......+..+.. ..+.+...+..++.+| + ++|++|+++|+|||+
T Consensus 1 L~Gkt~~e~a~id~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yl~Gd~~T~AD~~ 80 (127)
T d2gsqa1 1 LDGKTSLEKYRVDEITETLQDIFNDVVKIKFAPEAAKEAVQQNYEKSCKRLAPFLEGLLVSNGGGDGFFVGNSMTLADLH 80 (127)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSCSSTTSCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEeccCCchhHHH
Confidence 457899999999999998765433333332222221 1123445555555544 5 789999999999999
Q ss_pred HHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 133 IWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 133 l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+++.+.++..... ...+.||+|.+|+++|.++|.++++++.
T Consensus 81 l~~~l~~~~~~~~--~~~~~~P~l~~~~~~i~~~P~vk~yl~~ 121 (127)
T d2gsqa1 81 CYVALEVPLKHTP--ELLKDCPKIVALRKRVAECPKIAAYLKK 121 (127)
T ss_dssp HHHHHHHHHHHCT--TTTTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--cccccCcHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999765443 3467899999999999999999999865
|
| >d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Human (Homo sapiens), (a1-1) [TaxId: 9606]
Probab=99.12 E-value=3.6e-11 Score=104.16 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=58.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++.+++++++|++|+++|++|+.+.+++.+. ..+|+|+||+|+ +||.+|+||.||++||+
T Consensus 2 pkL~yf~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~-~~g~~l~eS~AI~~yLa 73 (77)
T d1gula2 2 PKLHYPNGRGRMESVRWVLAAAGVEFDEEFLETKEQLYKLQDGNHLLFQQVPMVE-IDGMKLVQTRSILHYIA 73 (77)
T ss_dssp CEEEEESSCTTTHHHHHHHHHTTCCCEEEEECSHHHHHHHHHTTCSTTSCSCEEE-ETTEEEESHHHHHHHHH
T ss_pred CEEEEcCCcchHHHHHHHHHHcCCCceEEeeccccccchhhhcccCCCCCCCEEE-ECCEeeecHHHHHHHHH
Confidence 589999999999999999999999999999987642 257999999996 78999999999999996
|
| >d1eema1 a.45.1.1 (A:103-241) Class omega GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class omega GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=4.4e-11 Score=116.44 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=82.7
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHhc---CCcccCCCCCccchhHHHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAIS---NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~~~L~ 138 (1175)
|.|+.+|+++++|+++.+.. .+.+..++.... ...+.+...|..+|+.|. ++|++|+++|+|||++++.+.
T Consensus 2 P~DP~~rA~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~f~~G~~~slADi~~~p~~~ 80 (139)
T d1eema1 2 PDDPYEKACQKMILELFSKV-PSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFE 80 (139)
T ss_dssp CSSHHHHHHHHHHHHHHTTH-HHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSSBTTBSSCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHhHH-hHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCCEEeeCCccHHHHHHHHHHH
Confidence 78999999999999988654 333333332221 234567889999999998 579999999999999999998
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
++... ......+.||+|.+|+++|.++|+|++++.+
T Consensus 81 ~~~~~-~~~~~~~~~P~l~~w~~r~~~rP~vk~~~~~ 116 (139)
T d1eema1 81 RLEAM-KLNECVDHTPKLKLWMAAMKEDPTVSALLTS 116 (139)
T ss_dssp HHTTT-TCGGGSSSCHHHHHHHHHHHTCHHHHHHCCC
T ss_pred HHHHh-ccccccccChHHHHHHHHHHcCcHHHHHCCC
Confidence 75322 2223457899999999999999999998544
|
| >d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class sigma GST species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]
Probab=99.10 E-value=4.7e-11 Score=102.71 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=59.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++.+++++++|++|+++|++|+.+.++... ...+|+|+||+|+ +||.+|+||.|||+||+
T Consensus 3 ~~L~yf~~~g~~~~iRl~L~~~gi~ye~~~~~~~~~~~~~~~~p~g~lPvL~-~~g~~i~eS~aI~~yL~ 71 (75)
T d2gsqa2 3 YTLHYFPLMGRAELCRFVLAAHGEEFTDRVVEMADWPNLKATMYSNAMPVLD-IDGTKMSQSMCIARHLA 71 (75)
T ss_dssp EEEEECSSSGGGHHHHHHHHHTTCCCEEEECCTTTHHHHGGGSGGGSSCEEE-ETTEEECCHHHHHHHHH
T ss_pred EEEEecCCchhHHHHHHHHHHcCCCchhhccccccchhhhhccccCCcCEEE-ECCeeeecHHHHHHHHH
Confidence 58999999999999999999999999999888765 2367999999996 78899999999999996
|
| >d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class pi GST species: Onchocerca volvulus [TaxId: 6282]
Probab=99.09 E-value=6.8e-11 Score=102.24 Aligned_cols=65 Identities=12% Similarity=-0.022 Sum_probs=58.8
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++.+++++++|++|.+.|++|+.+.++..+. ..+|+|+||+|+ +||.+|+||.||++||+
T Consensus 3 ~kL~Yf~~~g~~e~iRl~L~~~gi~~e~~~~~~~~~~~~~~~~p~g~lPvL~-~~~~~l~qS~AI~~YLa 71 (77)
T d1tu7a2 3 YKLTYFSIRGLAEPIRLFLVDQDIKFIDDRIAKDDFSSIKSQFQFGQLPCLY-DGDQQIVQSGAILRHLA 71 (77)
T ss_dssp EEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGGSTTTGGGSTTSCSCEEE-ETTEEEESHHHHHHHHH
T ss_pred eEEEecCCcHHHHHHHHHHHHcCCCceeeecccccchhhcccCCCCCCCEEE-ECCEEEEcHHHHHHHHH
Confidence 479999999999999999999999999988877652 368999999996 78999999999999997
|
| >d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.09 E-value=6.7e-11 Score=113.24 Aligned_cols=109 Identities=15% Similarity=0.112 Sum_probs=83.1
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCC----------chHHHHHHHHHHHHHhc--CCcccCCCCCccchh
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPKV----------LPDNLKTKLNVLNEAIS--NSFLIENSTTVADIC 132 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~----------~~~~l~~~L~~Le~~L~--~~fLvG~~lTlADi~ 132 (1175)
|+|.++.+++++++|++.... +...+..+++.... ..+.+.+.|..||++|+ ++|++|+++|+|||+
T Consensus 1 L~g~~~~e~a~vd~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~fl~G~~~T~aD~~ 79 (127)
T d1m0ua1 1 LCGATPWEDLQIDIVVDTIND-FRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVY 79 (127)
T ss_dssp CSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSBTTBCCHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCcccHHHHH
Confidence 568899999999999996653 43444433332210 12245677999999998 579999999999999
Q ss_pred HHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 133 IWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 133 l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+|+.|.++..... ....+.||+|.+|++||.++|.+++++++
T Consensus 80 l~~~l~~~~~~~~-~~~~~~~P~L~~~~~rv~~~P~ik~yl~~ 121 (127)
T d1m0ua1 80 FAGITDYMNYMVK-RDLLEPYPALRGVVDAVNALEPIKAWIEK 121 (127)
T ss_dssp HHHHHHHHHHHHT-SCTTTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchhhcChHHHHHHHHHHcCHHHHHHHHH
Confidence 9999997653221 24567899999999999999999999865
|
| >d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]
Probab=99.08 E-value=7.9e-11 Score=115.22 Aligned_cols=108 Identities=21% Similarity=0.296 Sum_probs=83.7
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC---------CchHHHHHHHHHHHHHhc---CCcccCCCCCccchh
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPK---------VLPDNLKTKLNVLNEAIS---NSFLIENSTTVADIC 132 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~---------~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~ 132 (1175)
|+|.++.+++.+++|++.... +...+..+++... ...+.+...|..||.+|. ++|++|+++|+|||+
T Consensus 2 Lyg~~~~E~a~vD~~~~~~~d-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~AD~~ 80 (143)
T d1b48a1 2 LYGKDLKERVRIDMYADGTQD-LMMMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLSWADIQ 80 (143)
T ss_dssp CSCSSHHHHHHHHHHHHHHHH-HHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSSSSSSSSCCHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCccHHHHH
Confidence 568899999999999997653 4444444443211 112345777899999998 479999999999999
Q ss_pred HHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 133 IWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 133 l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+++.+.++.... ......||+|.+|+++|.++|.++++++.
T Consensus 81 l~~~l~~~~~~~--~~~~~~~P~L~~~~~rv~~~P~ik~yl~~ 121 (143)
T d1b48a1 81 LLEAILMVEELS--APVLSDFPLLQAFKTRISNIPTIKKFLQP 121 (143)
T ss_dssp HHHHHHHHHTTC--TTGGGGCHHHHHHHHHHHTSHHHHHHHST
T ss_pred HHHHHHHHHHhC--cchhhhCHHHHHHHHHHHhCHHHHHHHcC
Confidence 999999875433 24567999999999999999999999853
|
| >d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class pi GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=4.1e-11 Score=103.92 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=59.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++.+++++++|++|+++|++|+.+.++..+. ..+|+|+||+|+ +||.+|+||.||++||+
T Consensus 3 ~~L~yf~~~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~p~g~vP~L~-~~g~~i~eS~aI~~yLa 73 (77)
T d2a2ra2 3 YTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQ-DGDLTLYQSNTILRHLG 73 (77)
T ss_dssp EEEEECSSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEE-ETTEEEECHHHHHHHHH
T ss_pred EEEEEcCCchhHHHHHHHHHHcCCCcEEEEecccccccccccccCCCCCCCEEE-ECCEeeecHHHHHHHHH
Confidence 589999999999999999999999999999987652 267999999996 78999999999999996
|
| >d1k3ya1 a.45.1.1 (A:81-222) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Human (Homo sapiens), (a1-1) [TaxId: 9606]
Probab=99.08 E-value=7.2e-11 Score=115.37 Aligned_cols=108 Identities=23% Similarity=0.289 Sum_probs=83.4
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC---------CchHHHHHHHHHHHHHhc---CCcccCCCCCccchh
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPK---------VLPDNLKTKLNVLNEAIS---NSFLIENSTTVADIC 132 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~---------~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~ 132 (1175)
|+|.++.+++++++|++.... +...+..++.... ...+.+.+.|..||..|+ +.|++|+++|+|||+
T Consensus 1 Lyg~~~~E~A~vd~~~d~~~d-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~f~~Gd~~T~ADi~ 79 (142)
T d1k3ya1 1 LYGKDIKERALIDMYIEGIAD-LGEMILLLPVCPPEEKDAKLALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIH 79 (142)
T ss_dssp CSCSSHHHHHHHHHHHHHHHH-HHHHHHHGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSSSSTTSCCHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCcCcHhHHH
Confidence 568999999999999997643 3333333333111 112346777999999998 689999999999999
Q ss_pred HHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 133 IWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 133 l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+++.+.++..... .....||+|.+|+++|.++|.+++++++
T Consensus 80 l~~~l~~~~~~~~--~~~~~yP~L~~~~~rv~~~P~vk~~l~~ 120 (142)
T d1k3ya1 80 LVELLYYVEELDS--SLISSFPLLKALKTRISNLPTVKKFLQP 120 (142)
T ss_dssp HHHHHHHHHHHCT--TTTTTCHHHHHHHHHHHHSHHHHHHHST
T ss_pred HHHHHHHHHHcCC--cccccCccHHHHHHHHHhCHHHHHHHcc
Confidence 9999998754433 3467899999999999999999999854
|
| >d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class mu GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=9.1e-11 Score=114.38 Aligned_cols=110 Identities=9% Similarity=0.059 Sum_probs=85.8
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC-----CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHH
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPK-----VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVY 138 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~-----~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~ 138 (1175)
|.|.++.+++++++|++.................. ...+.+...|..||++|+ ++||+|+++|+|||+++..+.
T Consensus 5 L~G~t~~E~a~vd~~~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~Gd~~T~AD~~l~~~l~ 84 (140)
T d3gtub1 5 MCGETEEEKIRVDIIENQVMDFRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTYDILD 84 (140)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHhcCCCCeeecCCcchhHHHHHHHHH
Confidence 56889999999999999776544333222221111 223467888999999999 999999999999999999999
Q ss_pred HHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 139 PLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 139 ~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++.... ....+.||+|.+|+++|.++|.+++++++-
T Consensus 85 ~~~~~~--~~~~~~~P~L~~~~~rv~~~P~Ik~yl~s~ 120 (140)
T d3gtub1 85 QNRIFD--PKCLDEFPNLKAFMCRFEALEKIAAYLQSD 120 (140)
T ss_dssp HHHHHC--GGGGTTCHHHHHHHHHHHTSHHHHHHHHCH
T ss_pred HHHHcC--ccchhcChHHHHHHHHHHcCHHHHHHHhcc
Confidence 865333 245688999999999999999999999864
|
| >d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class sigma GST species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.06 E-value=8.5e-11 Score=101.21 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=59.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.++++..+|++|.+.|++|+.+.++... ...+|+|+||+|+ +||.+|+||.||++||+
T Consensus 4 ~kL~Yf~~~g~~e~iRl~L~~~gi~yed~~~~~~~~~~~~~~~p~g~lP~l~-~~g~~l~qS~aI~~YLa 72 (76)
T d1m0ua2 4 YTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVLE-VDGKRVHQSISMARFLA 72 (76)
T ss_dssp EEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTTHHHHGGGSGGGCSCEEE-ETTEEEECHHHHHHHHH
T ss_pred EEEEecCCchHHHHHHHHHHHcCCCCEEecCChhhhhhhhccCcCCCCcEEE-ECCcccccHHHHHHHHH
Confidence 68999999999999999999999999999988765 3378999999996 68999999999999996
|
| >d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]
Probab=99.06 E-value=3.6e-11 Score=104.44 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=58.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++.+++++++|++|+++|++|+.+.++.... ..+|+|+||+|+ +||.+|+||.||++||+
T Consensus 4 ~kL~yf~~~~~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~-~~g~~l~eS~AI~rYLa 75 (78)
T d1b48a2 4 PKLYYFNGRGRMESIRWLLAAAGVEFEEEFLETREQYEKMQKDGHLLFGQVPLVE-IDGMMLTQTRAILSYLA 75 (78)
T ss_dssp CEEEBCSSCTTTHHHHHHHHHHTCCCCCCBCCCHHHHHHHHTTTCSSSSCSCEEE-ETTEEECCHHHHHHHHH
T ss_pred cEEEEcCCchHHHHHHHHHHHcCCCcEEEEEcchhhhcchhhcccccCCCCCEEE-eCCeEEECHHHHHHHHH
Confidence 589999999999999999999999999988886542 257999999996 78999999999999996
|
| >d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class tau GST species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]
Probab=99.05 E-value=1e-10 Score=102.93 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=56.7
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCC-CcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLS-KTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~-g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||++..||++++||++|.++|++|+.+.+++.... .+|. +.+|+| .+||..|+||.+|++||.
T Consensus 4 mkLy~~~~sp~~~rvr~~l~~kgi~~e~~~v~~~~~~~~~~~~~~~~~~~p~l-~~dg~~i~eS~~I~~YL~ 74 (83)
T d1gwca2 4 LKLLGAWPSPFVTRVKLALALKGLSYEDVEEDLYKKSELLLKSNPVHKKIPVL-IHNGAPVCESMIILQYID 74 (83)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHSTTTCCSCEE-EETTEEEESHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHHHHHHCCCCeEEEEEeccchhHHHHHHHhccCCCcee-ecCCceEcCHHHHHHHHH
Confidence 7999999999999999999999999999999876532 4565 466777 689999999999999996
|
| >d1gula1 a.45.1.1 (A:81-220) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Human (Homo sapiens), (a1-1) [TaxId: 9606]
Probab=99.04 E-value=1.3e-10 Score=113.28 Aligned_cols=107 Identities=17% Similarity=0.279 Sum_probs=82.3
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC---------CchHHHHHHHHHHHHHhc---CCcccCCCCCccchh
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPK---------VLPDNLKTKLNVLNEAIS---NSFLIENSTTVADIC 132 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~---------~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~ 132 (1175)
|.|.++.+++.+++|++.... +...+..+.+... ...+.+...|..++..|. ++|++|+++|+|||+
T Consensus 1 LyGkd~~E~a~vD~~~d~~~d-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~L~~~~~~fl~Gd~~T~AD~~ 79 (140)
T d1gula1 1 LFGKNLKERTLIDMYVEGTLD-LLELLIMHPFLKPDDQQKEVVNMAQKAIIRYFPVFEKILRGHGQSFLVGNQLSLADVI 79 (140)
T ss_dssp CSCSSHHHHHHHHHHHHHHHH-HHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCSSSSTTSCCHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeeCCCCCHHHHH
Confidence 568999999999999986543 4343333333111 112345677899999998 689999999999999
Q ss_pred HHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 133 IWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 133 l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
+++.|.++..... .....||+|.+|++||.++|.+++++.
T Consensus 80 l~~~l~~~~~~~~--~~~~~~P~L~~~~~rv~~~P~ik~yl~ 119 (140)
T d1gula1 80 LLQTILALEEKIP--NILSAFPFLQEYTVKLSNIPTIKRFLE 119 (140)
T ss_dssp HHHHHHHHHHHCT--TTTTTCHHHHHHHHHHTTSHHHHHHHS
T ss_pred HHHHHHHHHHhCc--chhhHhHHHHHHHHHHHhCHHHHHHHc
Confidence 9999998754332 356789999999999999999999875
|
| >d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Human (Homo sapiens), (a1-1) [TaxId: 9606]
Probab=99.04 E-value=1.3e-10 Score=100.97 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=58.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc-------cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD-------ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~-------~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++.+++++.+|++|++.|++|+.+.+...+ ...+|+|+||+|+ +||.+|+||.||++||+
T Consensus 4 ~kL~Yf~~~grae~irl~L~~~gv~yed~~~~~~~~~~~~~~~~~~p~g~lPvl~-~~g~~l~qS~AI~~YLa 75 (79)
T d1k3ya2 4 PKLHYFNARGRMESTRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVE-IDGMKLVQTRAILNYIA 75 (79)
T ss_dssp CEEEEESSSTTTHHHHHHHHHHTCCCEEEEECSHHHHHHHHHTTCCTTSCSCEEE-ETTEEEESHHHHHHHHH
T ss_pred cEEEEcCCcHHHHHHHHHHHHcCCCceEEEecchhhhhhhcccccCCCCCCCEEE-ECCeEEEcHHHHHHHHH
Confidence 58999999999999999999999999988887654 2267999999996 78999999999999996
|
| >d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class pi GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.2e-10 Score=112.06 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=81.8
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCC-C--------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHH
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNP-K--------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIW 134 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g-~--------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~ 134 (1175)
|+|.++.+++++|+|++.... +...+..++... . .....+...+..++.+|. +.||+|+++|+|||+++
T Consensus 1 Lygk~~~e~a~iD~~~~~~~d-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Gd~~T~AD~~~~ 79 (132)
T d2a2ra1 1 LYGKDQQEAALVDMVNDGVED-LRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLL 79 (132)
T ss_dssp CSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTSCSSTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH-HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeeeceeehhHHHHH
Confidence 568999999999999997653 333333332211 1 112234556677777788 99999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
++|..+..... .....||+|.+|++||.++|.+++++.+-
T Consensus 80 ~~l~~~~~~~~--~~~~~~P~L~~~~~rv~~~P~ik~yl~s~ 119 (132)
T d2a2ra1 80 DLLLIHEVLAP--GCLDAFPLLSAYVGRLSARPKLKAFLASP 119 (132)
T ss_dssp HHHHHHHHHST--TGGGGCHHHHHHHHHHHTSHHHHHHHHSH
T ss_pred HHHHHHHHhCc--cccccChHHHHHHHHHHHCHHHHHHHcCC
Confidence 99998754433 34688999999999999999999998854
|
| >d1tw9a1 a.45.1.1 (A:78-206) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class sigma GST species: Heligmosomoides polygyrus [TaxId: 6339]
Probab=99.04 E-value=1.7e-10 Score=110.48 Aligned_cols=106 Identities=12% Similarity=0.242 Sum_probs=79.9
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcC--C----C-------CchHHHHHHHHHHHHHhc---CCcccCCCCCccc
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDN--P----K-------VLPDNLKTKLNVLNEAIS---NSFLIENSTTVAD 130 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~--g----~-------~~~~~l~~~L~~Le~~L~---~~fLvG~~lTlAD 130 (1175)
|.++.+++++++|++... .+...+..+++. + . .....+.+.|..||.+|+ ++|++|+++|+||
T Consensus 2 Gktp~e~a~vd~~~d~~~-D~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~le~~L~~~~~~~~~G~~~T~aD 80 (129)
T d1tw9a1 2 GATPFESALIDSLADAYT-DYRAEMKTYYYTALGFMTGDVDKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVD 80 (129)
T ss_dssp CSSHHHHHHHHHHHHHHH-HHHHHC---------------CHHHHHTHHHHHHHHHHHHHHHHHHCTTSSSSTTSCCHHH
T ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeccCcchHHH
Confidence 678999999999999775 344444443331 1 1 112345778999999998 5799999999999
Q ss_pred hhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 131 ICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 131 i~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
|++++.+.++..... ...+.||+|.+|+++|.++|.+++++.+
T Consensus 81 ~~~~~~l~~~~~~~~--~~~~~~P~L~~~~~rv~~~P~ik~yl~~ 123 (129)
T d1tw9a1 81 LLVAEHVADMTNRVP--EYIEGFPEVKAHMERIQQTPRIKKWIET 123 (129)
T ss_dssp HHHHHHHHHHHHHCG--GGGTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc--cccccChHHHHHHHHHHcCHHHHHHHHH
Confidence 999999998754332 4567899999999999999999998864
|
| >d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class mu GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=3.6e-10 Score=108.90 Aligned_cols=109 Identities=11% Similarity=0.124 Sum_probs=84.9
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
|+|.++.++++++++++-... +...+..+.+... ...+.+...|..||++|+ ++||+|+++|+||+++++.+
T Consensus 1 L~G~t~~E~a~vD~~~~~v~D-~~~~~~~~~~~~~~e~~k~~~~~~l~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l 79 (133)
T d2c4ja1 1 LCGESEKEQIREDILENQFMD-SRMQLAKLCYDPDFEKLKPEYLQALPEMLKLYSQFLGKQPWFLGDKITFVDFIAYDVL 79 (133)
T ss_dssp CSCCSHHHHHHHHHHHHHHHH-HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCccHHHHHHHHHH
Confidence 457888999999999875543 3344443333222 112457888999999999 99999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
.++..... ...+.||+|.+|+++|.++|.+++++.+-
T Consensus 80 ~~~~~~~~--~~l~~~P~L~~~~~rv~~~P~ik~yl~s~ 116 (133)
T d2c4ja1 80 ERNQVFEP--SCLDAFPNLKDFISRFEGLEKISAYMKSS 116 (133)
T ss_dssp HHHHHHST--TTTTTCHHHHHHHHHHHHSHHHHHHHHST
T ss_pred HHHHHhCc--hhhhhCchHHHHHHHHHhCHHHHHHHhCc
Confidence 99754433 34688999999999999999999998753
|
| >d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class mu GST species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=2.1e-10 Score=110.62 Aligned_cols=108 Identities=11% Similarity=0.171 Sum_probs=84.0
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
|+|.++.++++++++++........ +........ ...+.+...|..||++|+ ++||+|+++|+||++++..+
T Consensus 1 L~Gkt~~E~~~vd~l~~~~~D~~~~-~~~~~~~~~~e~~k~~~~~~l~~~l~~le~~l~~~~~l~Gd~~T~aD~~l~~~l 79 (133)
T d2gsta1 1 LCGETEEERIRADIVENQVMDNRMQ-LIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYDIL 79 (133)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHH-HHHHHTCTTHHHHHHHHHHTHHHHHHHHHHHHTTCSSSSSSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-HHHHhccccHHHHHHHHHHHHHHHHHHHHHHhCCCCceeCCccchhHHHHHHHH
Confidence 4578899999999998877644433 333322111 113456778999999999 99999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
.++..... ...+.||+|.+|+++|.++|.+++++.+
T Consensus 80 ~~~~~~~~--~~~~~~P~L~~~~~~i~~~P~ik~yl~s 115 (133)
T d2gsta1 80 DQYHIFEP--KCLDAFPNLKDFLARFEGLKKISAYMKS 115 (133)
T ss_dssp HHHHHHST--TTTTTCHHHHHHHHHHHTSHHHHHHHTS
T ss_pred HHHHHhCc--chhhhCHHHHHHHHHHHcCHHHHHHHhC
Confidence 99764433 3467899999999999999999998864
|
| >d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class mu GST species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=2.8e-10 Score=100.26 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=58.5
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc--------------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA--------------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~--------------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.+++++++|++|.++|++|+.+.++..+. ..+|+++||+|+ ++|.+|+||.||++||+
T Consensus 2 ~~L~Y~~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lP~L~-~~g~~l~eS~AIl~YLa 80 (84)
T d2c4ja2 2 MTLGYWNIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLI-DGTHKITQSNAILRYIA 80 (84)
T ss_dssp EEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEE-ETTEEEESHHHHHHHHH
T ss_pred EEEEECCCchhhHHHHHHHHHcCCCceEEEEccccccccchHHHhhhhhhccCCCCCCCEEE-ECCEEEecHHHHHHHHH
Confidence 589999999999999999999999999999987531 267999999996 78999999999999996
|
| >d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Pf GST species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.98 E-value=2.9e-10 Score=100.44 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=58.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc-----------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA-----------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~-----------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+++.+++++++|++|+++|++|+.+.+++.+. ..+|++++|+|+ +||.+|+||.||++||+
T Consensus 5 i~L~Y~~~~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~-~~g~~l~eS~AI~~yLa 80 (85)
T d1okta2 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQ-IGDLILAQSQAIVRYLS 80 (85)
T ss_dssp EEEEEESSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEE-ETTEEEECHHHHHHHHH
T ss_pred eEEEEcCCchhhHHHHHHHHHcCCCceEEEEcccccchhhhhhhhhcccccCCCCCeee-cCCCEEecHHHHHHHHH
Confidence 479999999999999999999999999999998641 256999999996 79999999999999997
|
| >d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class mu GST species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.98 E-value=6.1e-10 Score=107.33 Aligned_cols=108 Identities=11% Similarity=0.134 Sum_probs=84.1
Q ss_pred HcCCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHH
Q psy7266 65 LSKFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCV 137 (1175)
Q Consensus 65 L~p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L 137 (1175)
|+|.++.+++.++++.+.... +...+..+.+... ...+.+...|..||++|+ ++||+|+++|+|||+++..+
T Consensus 1 L~Gkt~~E~~~vd~i~~~~~D-l~~~~~~~~~~~~~e~~k~~~~~~l~~~l~~le~~l~~~~~l~Gd~~T~AD~~~~~~l 79 (133)
T d1gsua1 1 MCGETEVEKQRVDVLENHLMD-LRMAFARLCYSPDFEKLKPAYLEQLPGKLRQLSRFLGSRSWFVGDKLTFVDFLAYDVL 79 (133)
T ss_dssp CSCCSHHHHHHHHHHHHHHHH-HHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHH-HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhCCCCceeCCCcchhHHHHHHHH
Confidence 457888999999999887653 3333333333221 113456778999999999 99999999999999999999
Q ss_pred HHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 138 YPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 138 ~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
.++..... ...+.||+|.+|+++|.++|.+++++++
T Consensus 80 ~~~~~~~~--~~l~~~P~L~~~~~~v~~~P~Ik~yl~s 115 (133)
T d1gsua1 80 DQQRMFVP--DCPELQGNLSQFLQRFEALEKISAYMRS 115 (133)
T ss_dssp HHHHHHST--TCGGGSSHHHHHHHHHHTSHHHHHHHTS
T ss_pred HHHHHhCc--chhhhCchHHHHHHHHHhCHHHHHHHcC
Confidence 98754433 3467899999999999999999998864
|
| >d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Chloride intracellular channel 1 (clic1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=3.4e-10 Score=99.80 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=54.0
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
..||+++++|++|+++|++|+.+.+++.+.. +||.++||+|+ +||.+|+||.+|++||.
T Consensus 17 ~~cPf~~rv~~~L~~kgi~~~~~~v~~~~~~~~~~~~nP~~~vPvL~-~~~~~i~eS~~I~~YLe 80 (86)
T d1k0ma2 17 GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGELPFLL-YGTEVHTDTNKIEEFLE 80 (86)
T ss_dssp CSCHHHHHHHHHHHHHTCCCEEEEECTTSCCHHHHHHCTTCCSSEEE-ETTEEEECHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHCCCcEEEEeecccccHHHHHHhccCceeEEE-EcccccccHHHHHHHHH
Confidence 4699999999999999999999999987632 78999999997 78999999999999995
|
| >d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class sigma GST species: Heligmosomoides polygyrus [TaxId: 6339]
Probab=98.96 E-value=3.5e-10 Score=97.59 Aligned_cols=65 Identities=22% Similarity=0.163 Sum_probs=58.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc----cccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD----ARLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~----~~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++|++++.+++++.+|++|++.|++|+.+.++..+ ...+|+|+||+|+ +||..|+||.||++||+
T Consensus 4 ~kL~Yf~~~gr~e~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~p~g~lPvL~-~~g~~i~qS~AI~~yLa 72 (77)
T d1tw9a2 4 YKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFVPLKATFPFGQVPVLE-VDGQQLAQSQAICRYLA 72 (77)
T ss_dssp EEEEEESSSGGGHHHHHHHHHTTCCCEEEEECHHHHGGGGGGSTTSCSCEEE-ETTEEEECHHHHHHHHH
T ss_pred eEEEECCCchHHHHHHHHHHHcCCCceeeecccccchhhhhhcccCCCCEEE-ECCEEEEcHHHHHHHHH
Confidence 48999999999999999999999999998887654 2367999999996 78999999999999996
|
| >d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: GST-like domain of elongation factor 1-gamma species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.94 E-value=3.1e-10 Score=97.04 Aligned_cols=65 Identities=20% Similarity=0.083 Sum_probs=55.4
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc---cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR---LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~---~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
++||+.+ ++++.++++++++.|++|+.+..+..+.+ +||.|+||+|+++||.+|+||.||++||.
T Consensus 4 ~tLY~~~-~~rs~~~~~~l~~~~~d~~~~~~~~~~~~~~~~nP~gkVP~L~~~~g~~l~ES~aI~~YL~ 71 (75)
T d1nhya2 4 GTLYANF-RIRTWVPRGLVKALKLDVKVVTPDAAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYYLV 71 (75)
T ss_dssp CEEECCS-SHHHHHHHHHHHHHTCCCEEECGGGCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHHHH
T ss_pred eEEecCC-CchHHHHHHHHHhcCccccccCcccCCHHHHHhCcCCCCCeEEeCCeeEecCHHHHHHHHH
Confidence 5899877 58899999999999999997654433322 79999999998788999999999999985
|
| >d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Hypothetical protein AGR pAT 752p/Atu5508 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.92 E-value=2e-10 Score=101.76 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=57.6
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcc--------cccCCCCcccEEEeCCC-cEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVAD--------ARLLLSKTVPVLELDDG-SQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~--------~~~~P~g~vP~L~~~dG-~~l~eS~aI~~YL~ 66 (1175)
++||+++.+++++++|++|+++|++|+.+.++... ...+|++++|+|++++| .+|+||.||++||+
T Consensus 8 ~~L~Y~~~~g~~e~vRl~L~~~g~~ye~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~g~~~l~qS~AI~~YLa 82 (87)
T d2fnoa2 8 FDLYYWPVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAIAIYLG 82 (87)
T ss_dssp EEEECCSSSSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHHHHHHHH
T ss_pred eEEEECCCCcchHHHHHHHHHHhCcceeeccchhHHHHHhhcccccCCCCCCCEEEecCCCeeeehHHHHHHHHH
Confidence 58999999999999999999999999987776422 23779999999988776 68999999999996
|
| >d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.92 E-value=2.3e-10 Score=79.60 Aligned_cols=35 Identities=51% Similarity=1.106 Sum_probs=33.9
Q ss_pred ecccCCCccccCCCCCcccccCCccccccccCCcc
Q psy7266 418 VEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRC 452 (1175)
Q Consensus 418 V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c 452 (1175)
|+|+||.|++++++||+|+.||+.+++.||++|+|
T Consensus 1 V~G~CP~C~~~~a~GDqCe~CG~~~~p~eLinP~C 35 (35)
T d1rqga3 1 VIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRC 35 (35)
T ss_dssp CCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBC
T ss_pred CeEECCCCCCCcccCcchhhcCCccCHHHhcCCCC
Confidence 67999999999999999999999999999999998
|
| >d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Microsomal prostaglandin E synthase-2 species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
Probab=98.92 E-value=6.2e-10 Score=103.88 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=59.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc---cCCCCcccEEEeCC---CcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR---LLLSKTVPVLELDD---GSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~---~~P~g~vP~L~~~d---G~~l~eS~aI~~YL~ 66 (1175)
|+||+++.||+|+++|++|.++|++|+.+.++..... .+|.++||+|+.++ |.+|+||.+|++||.
T Consensus 3 i~LY~~~~sP~~~kvr~~L~~k~l~~~~~~v~~~~~~~~~~~~~~~vP~l~~~~~~~g~~i~eS~~Ii~YL~ 74 (113)
T d1z9ha2 3 LTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALK 74 (113)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTCGGGTTCSCCSSCEEEEEETTEEEEECSHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHcCCeeEEeccCcccchhhccCccccccccccccCCCceEeecHHHHHHHHH
Confidence 5899999999999999999999999999999887643 68999999998553 589999999999997
|
| >d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Pf GST species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.92 E-value=2e-09 Score=102.64 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=79.9
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCC----chHHHHHHHHHHHHHhc---------CCcccCCCCCccchhH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPKV----LPDNLKTKLNVLNEAIS---------NSFLIENSTTVADICI 133 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~----~~~~l~~~L~~Le~~L~---------~~fLvG~~lTlADi~l 133 (1175)
|.++.+++++|+|++.... +...+..+.+.... ..+.+...|..||+.|. ++||+|+++|+|||++
T Consensus 2 G~t~~E~a~iD~i~~~~~D-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~~~~flvG~~~T~AD~~~ 80 (126)
T d1okta1 2 GESELNEFYADMIFCGVQD-IHYKFNNTNLFKQNETTFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYADLAV 80 (126)
T ss_dssp CSSHHHHHHHHHHHHHHHH-HHHHHTTCCTTTTCHHHHHHTHHHHHHHHHHHHHHHTCSSCCTTCCCSSTTSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhHHHH-HHHHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHccccccCCCCeeecCCccHHHHHH
Confidence 6788999999999987653 33333332221211 12346777888888873 4799999999999999
Q ss_pred HHHHHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 134 WTCVYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 134 ~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+..|.++.... ......||+|.+|+++|.++|.+++++++
T Consensus 81 ~~~l~~~~~~~--~~~~~~~P~L~~~~~rv~~~P~ik~yl~~ 120 (126)
T d1okta1 81 FNLYDDIETKY--PSSLKNFPLLKAHNEFISNLPNIKNYITN 120 (126)
T ss_dssp HHHHHHHHTTS--CCTTTTCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHhC--ccccccChHHHHHHHHHHcCHHHHHHHHh
Confidence 99999875433 24567899999999999999999999865
|
| >d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Fasciola hepatica [TaxId: 6192]
Probab=98.91 E-value=9.5e-10 Score=95.73 Aligned_cols=65 Identities=15% Similarity=0.069 Sum_probs=58.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc---------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR---------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~---------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|+|++++..++++.+|++|++.|++|+.+.++....+ .+|++++|+++ ++|..|+||.||++||+
T Consensus 2 ~~L~Y~~~rgrae~iRl~L~~~gv~ye~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~-~~g~~l~qS~AI~~yLa 75 (80)
T d1fhea2 2 AKLGYWKLRGLAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYI-DDKCKLTQSVAIMRYIA 75 (80)
T ss_dssp CEEEEESSCTTTHHHHHHHHHTTCCCEEEEECSTTSHHHHTTTTTSCCSSCCSSEEE-CSSCEEESTTHHHHHHH
T ss_pred eEEEEcCCchHHHHHHHHHHHcCCCCEEEEeccccchhcchhhhhccCCCcceeeee-cCCeEEeCHHHHHHHHH
Confidence 6899999999999999999999999999998875321 46999999995 88999999999999997
|
| >d1duga2 c.47.1.5 (A:1-80) Class alpha GST {Schistosoma japonicum [TaxId: 6182]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Schistosoma japonicum [TaxId: 6182]
Probab=98.89 E-value=1.3e-09 Score=94.74 Aligned_cols=64 Identities=13% Similarity=0.024 Sum_probs=57.9
Q ss_pred EEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc---------ccCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA---------RLLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~---------~~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+||+++..++++.+|++|++.|++|+.+.++..+. ..+|++++|+|+ +||..|+||.||++||+
T Consensus 3 ~L~Y~~~rgrae~vRl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~p~~~lP~l~-d~g~~l~qS~AI~ryLa 75 (80)
T d1duga2 3 ILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYI-DGDVKLTQSMAIIRYIA 75 (80)
T ss_dssp EEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEE-CSSCEEESHHHHHHHHH
T ss_pred EEEEcCCchhhHHHHHHHHHcCCCceEEEEecccccccchhhhhccCCCcccceec-cCCeeehhHHHHHHHHH
Confidence 79999999999999999999999999999987652 146999999995 89999999999999996
|
| >d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Fasciola hepatica [TaxId: 6192]
Probab=98.87 E-value=3.3e-09 Score=102.35 Aligned_cols=106 Identities=14% Similarity=0.257 Sum_probs=83.2
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
|.+..++++++++++... .+...+..+++... .-.+.+...|..||+.|+ ++||+|+++|+|||+++..+.+
T Consensus 2 G~t~~E~~~vD~i~~~~~-Dl~~~~~~~~~~~~~e~~K~~~~~~l~~~l~~le~~L~~~~~lvG~~lT~AD~~~f~~l~~ 80 (136)
T d2fhea1 2 GTTSEERARVSMIEGAAV-DLRQGISRISYQPKFEQLKEGYLKDLPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEALDA 80 (136)
T ss_dssp CSSHHHHHHHHHHHHHHH-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCcccchHHHHHHHHHH
Confidence 567889999999988766 44444444443222 112356778999999999 9999999999999999999998
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+..... ...+.||+|.+|+++|.++|.+++++++
T Consensus 81 ~~~~~~--~~l~~yP~L~~~~~~v~~~P~Ik~yl~S 114 (136)
T d2fhea1 81 IRYLEP--HCLDHFPNLQQFMSRIEALPSIKAYMES 114 (136)
T ss_dssp HHHHCT--TTTTTCHHHHHHHHHHHTSHHHHHHHTS
T ss_pred HHHHCC--CcchhchhHHHHHHHHHhCHHHHHHHcC
Confidence 754433 4568899999999999999999998864
|
| >d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma japonicum [TaxId: 6182]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Schistosoma japonicum [TaxId: 6182]
Probab=98.86 E-value=1.8e-09 Score=104.72 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=82.4
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC------CchHHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPK------VLPDNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYP 139 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~------~~~~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~ 139 (1175)
+.++.+++.+++++.... .+...+...++... ...+.+...|..||++|+ ++||+|+++|+||+++|..+.+
T Consensus 2 G~t~~E~a~id~i~~~v~-Dl~~~~~~~~~~p~~e~~k~~~~~~l~~~l~~le~~L~~~~fl~G~~lT~AD~~~~~~l~~ 80 (140)
T d1duga1 2 GGCPKERAEISMLEGAVL-DIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDV 80 (140)
T ss_dssp CSSHHHHHHHHHHHHHHH-HHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHTTTCSBTTBSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCccHHHHHHHHHHHH
Confidence 567889999999887554 33344444333211 113467888999999999 9999999999999999999998
Q ss_pred HhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHH
Q psy7266 140 LLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKT 175 (1175)
Q Consensus 140 ~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~ 175 (1175)
+.... ....+.||+|.+|+++|.++|.+++++++
T Consensus 81 ~~~~~--~~~l~~~P~L~~~~~ri~~~P~Ik~yl~S 114 (140)
T d1duga1 81 VLYMD--PMCLDAFPKLVCFKKRIEAIPQIDKYLKS 114 (140)
T ss_dssp HHHHC--TTTTTTCHHHHHHHHHHHHSHHHHHHHTS
T ss_pred HHHhC--ccchhhChHHHHHHHHHHhCHHHHHHHcC
Confidence 75433 24567899999999999999999999864
|
| >d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus [TaxId: 6282]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class pi GST species: Onchocerca volvulus [TaxId: 6282]
Probab=98.76 E-value=5.8e-09 Score=99.98 Aligned_cols=108 Identities=8% Similarity=0.081 Sum_probs=77.6
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCCc-----hHHHHHHHHHHHHHhc-----CCcccCCCCCccchhHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPKVL-----PDNLKTKLNVLNEAIS-----NSFLIENSTTVADICIWTC 136 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~-----~~~l~~~L~~Le~~L~-----~~fLvG~~lTlADi~l~~~ 136 (1175)
|.++.+++.+|++++.........+..++...... .+.+...+..++..|. ++||+|+++|+||++++..
T Consensus 1 G~~~~E~a~vD~i~~~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~~lT~aD~~~~~~ 80 (131)
T d1tu7a1 1 GENEMETTYIDMFCEGVRDLHVKYTRMIYMAYETEKDPYIKSILPGELAKFEKLLATRGNGRNLILGDKISYADYALFEE 80 (131)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHHHHHHHTTTGGGSSBTTBSSCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCCCcchhHHHHHHH
Confidence 46788999999998866543333222222111111 2234555666666654 6899999999999999999
Q ss_pred HHHHhhCCCCCCCcccchhHHHHHHHHhcCHHHHHHHHHH
Q psy7266 137 VYPLLSDSKVRPLLSSYTNITPWYDRISKLPQVQKALKTW 176 (1175)
Q Consensus 137 L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~ 176 (1175)
|.++..... .....||+|.+|++|+.++|.+++++..-
T Consensus 81 l~~~~~~~~--~~~~~~P~L~~~~~rv~~~P~Ik~yl~s~ 118 (131)
T d1tu7a1 81 LDVHQILDP--HCLDKFPLLKVFHQRMKDRPKLKEYCEKR 118 (131)
T ss_dssp HHHHHHHCT--TTTTTCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHhCh--hhhhccHHHHHHHHHHHcCHHHHHHHhCC
Confidence 998754433 45678999999999999999999999864
|
| >d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=7.8e-10 Score=76.79 Aligned_cols=35 Identities=46% Similarity=1.057 Sum_probs=32.8
Q ss_pred ecccCCCccccCCCCCcccccCCccccccccCCcc
Q psy7266 418 VEGVCPKCRYEDARGDQCDGCGQLINAIELIQPRC 452 (1175)
Q Consensus 418 V~g~cP~c~~~d~~G~~c~~~g~~~~~~el~~~~c 452 (1175)
|+|+||.|++++++||+|+.||..+++.||++|++
T Consensus 1 V~G~CP~C~~~~a~GDqCe~CG~~~~p~eLinP~S 35 (35)
T d1pfva3 1 VKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKS 35 (35)
T ss_dssp EEEECTTTCCSSEETTBCTTTCCBCCGGGSEEEEE
T ss_pred CeeECCCCCCcccccccHHHcCCcCCHHHhcCCCC
Confidence 67999999999999999999999999999998863
|
| >d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class tau GST species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.72 E-value=3.2e-09 Score=103.78 Aligned_cols=108 Identities=11% Similarity=0.162 Sum_probs=85.6
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCC----CchHHHHHHHHHHHHHhc-CCcccC---CCCCccchhHHHHHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPK----VLPDNLKTKLNVLNEAIS-NSFLIE---NSTTVADICIWTCVY 138 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~----~~~~~l~~~L~~Le~~L~-~~fLvG---~~lTlADi~l~~~L~ 138 (1175)
+.++.+|++++.|++|.+..+.+.+..++.... ...+++...|..||+.|. ++|+.| +.+|+|||++++.+.
T Consensus 10 ~~~~yeRA~~R~W~~~vd~~i~~~~~~~~~~~~e~~e~a~~~~~~~L~~lE~~l~~~~~~~g~~g~~~sl~Di~~~p~~~ 89 (145)
T d1oyja1 10 ADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTA 89 (145)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCSCCHHHHHHGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCcccHHHHHHhHHHH
Confidence 456789999999999999999998877765322 335568899999999999 888887 569999999999887
Q ss_pred HHhh--CCCCCCCcccchhHHHHHHHHhcCHHHHHHHH
Q psy7266 139 PLLS--DSKVRPLLSSYTNITPWYDRISKLPQVQKALK 174 (1175)
Q Consensus 139 ~~~~--~~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~ 174 (1175)
++.. ...+......+|+|.+|+++|.++|+|++++.
T Consensus 90 ~~~~~~~~~g~~~~~~~P~l~~W~~rl~~rpavk~~lp 127 (145)
T d1oyja1 90 WFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVVKHLP 127 (145)
T ss_dssp GHHHHHHHHTCCHHHHCHHHHHHHHHHTTSHHHHHHCC
T ss_pred HHHHHHHhhcccccccCHHHHHHHHHHhCChHHHHHCC
Confidence 7531 11112334689999999999999999998863
|
| >d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Class alpha GST species: Blood fluke (Schistosoma haematobium) [TaxId: 6185]
Probab=98.70 E-value=1.3e-08 Score=96.41 Aligned_cols=107 Identities=13% Similarity=0.208 Sum_probs=80.2
Q ss_pred CCChHHHHHHHHHHHHHhhhchhhhhhhhcCCCCc---------hHHHHHHHHHHHHHhc---CCcccCCCCCccchhHH
Q psy7266 67 KFDTKNESAINQWLEWESVELFPSVLSFFDNPKVL---------PDNLKTKLNVLNEAIS---NSFLIENSTTVADICIW 134 (1175)
Q Consensus 67 p~~~~~~a~v~~wl~~~~~~l~p~~~~~~~~g~~~---------~~~l~~~L~~Le~~L~---~~fLvG~~lTlADi~l~ 134 (1175)
|.+..+++.++++++... .+...+..+++..... ...+.+.|..||+.|. ++|++|+++|+||+++|
T Consensus 2 G~~~~E~~~vD~i~~~~~-Dl~~~~~~~~~~~~~~k~~~~~~~~~~~l~~~l~~le~~L~~~~~~f~vG~~lT~aD~~~~ 80 (123)
T d1oe8a1 2 GGTEEEYYNVEKLIGQAE-DLEHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLI 80 (123)
T ss_dssp CSSHHHHHHHHHHHHHHH-HHHHHHHTTTTCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHTCSSSSSSTTSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHHHHHHHHHhhCCCCeeeCCCCcHHHHHHH
Confidence 567889999999988665 3444444443321111 1246788999999998 46999999999999999
Q ss_pred HHHHHHhhCCCCCCCcccchhHHHHHHHH-hcCHHHHHHHHH
Q psy7266 135 TCVYPLLSDSKVRPLLSSYTNITPWYDRI-SKLPQVQKALKT 175 (1175)
Q Consensus 135 ~~L~~~~~~~~~~~~~~~~p~L~~W~~rl-~~~P~~~~~l~~ 175 (1175)
..|.++..... ......||+|.+|++++ .++|.++++++.
T Consensus 81 ~~l~~~~~~~~-~~~~~~~P~L~~~~~~v~~~~P~I~~yl~s 121 (123)
T d1oe8a1 81 AVIDHVTDLDK-EFLTGKYPEIHKHRENLLASSPRLAKYLSD 121 (123)
T ss_dssp HHHHHHHHHCT-TTTTTSCHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhCc-ccccccCcHHHHHHHHHHHcChHHHHHHHc
Confidence 99998754433 23457899999999997 789999999875
|
| >d1oe8a2 c.47.1.5 (A:4-84) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class alpha GST species: Blood fluke (Schistosoma haematobium) [TaxId: 6185]
Probab=98.66 E-value=1.7e-08 Score=87.81 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=55.1
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCccc----ccCCCCcccEEEe----CCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADA----RLLLSKTVPVLEL----DDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~----~~~P~g~vP~L~~----~dG~~l~eS~aI~~YL~ 66 (1175)
|+||+++.++++..+|++|++.|++|+.+.++..+. ...|++++|++.. ++|..|+||.||++||+
T Consensus 3 ~kL~Y~~~rgr~e~iR~lL~~~gv~ye~~~~~~~~~~~~k~~~~~~~lP~~~~p~l~~~~~~l~qS~AI~~YLa 76 (81)
T d1oe8a2 3 IKVIYFNGRGRAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIARYMA 76 (81)
T ss_dssp EEEEESCTTSTTHHHHHHHHHTTCCCEEEECCTTTHHHHGGGSTTSCSCEEEEECTTCCEEEEESHHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCCceeEeccchhhHHhhhcccccCCCcccCCccccCCEEEEcHHHHHHHHH
Confidence 689999999999999999999999999999887652 2345666666653 46789999999999996
|
| >d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Chloride intracellular channel 1 (clic1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2.1e-07 Score=90.83 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=57.8
Q ss_pred HHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhC---CCCCCCcccchhHHHHHHHHhcCHHHHHHHHHHHHHhc
Q psy7266 109 LNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSD---SKVRPLLSSYTNITPWYDRISKLPQVQKALKTWTEVLK 181 (1175)
Q Consensus 109 L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~---~~~~~~~~~~p~L~~W~~rl~~~P~~~~~l~~~~~~~k 181 (1175)
+..+|..|+ ++||+|+++|+|||++++.|.++... .........||+|.+|+++|.++|+|+++...-+.+..
T Consensus 64 l~~~~~~l~~~~fl~Gd~~t~aDi~l~p~l~r~~~~~~~~~~~~~~~~~p~l~~w~~~l~~rpsf~~T~~~~e~i~~ 140 (149)
T d1k0ma1 64 TSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCPDDEEIEL 140 (149)
T ss_dssp CHHHHHSCCCCSSSSSSSCCHHHHHHHHHHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHTSHHHHTTSCCHHHHHH
T ss_pred HHHHHHhhcCCcccCCCCCcHHHHHHHHHHHHHHhhhcccccchhhhcChHHHHHHHHHHCChHHHHhCCCHHHHHH
Confidence 577888999 99999999999999999999876411 11223457899999999999999999998654444443
|
| >d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Microsomal prostaglandin E synthase-2 species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
Probab=97.85 E-value=7e-06 Score=79.45 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHH-hc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHh
Q psy7266 102 PDNLKTKLNVLNEA-IS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRIS 164 (1175)
Q Consensus 102 ~~~l~~~L~~Le~~-L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~ 164 (1175)
++.+...|+.+.+. +. ++|+.|+++++||+++++.|.++.... .-.....+|+|.+|++||.
T Consensus 92 r~~L~~~ld~f~~~~l~~~~F~gGd~P~lADlavfg~l~~~~~~~-~f~~l~~~p~i~~W~~RMk 155 (161)
T d1z9ha1 92 REDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLD-AFDDLMQHTHIQPWYLRVE 155 (161)
T ss_dssp HHHHHHHHHHHHHHHCSSCSBTTBTSCCHHHHHHHHHHHTTTTSH-HHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCccCCCCCcHHHHHHHhhhhhhhhcc-ccchhccCCcHHHHHHHHH
Confidence 45566666655444 45 899999999999999999999863211 1123578999999999984
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.80 E-value=0.00087 Score=72.49 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=43.3
Q ss_pred CCCCCCCCchhhhhhHHhHHHHHHHHHcCCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHHHHHHHhhccccccc
Q psy7266 291 YVNNVPHLGNIIGCVLSADVFSRFCRLVNRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAIHREVYEWFEIDFDY 370 (1175)
Q Consensus 291 y~nG~lHiGH~~~~~l~~D~~aR~~r~~G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 370 (1175)
-|||.|||||.. ++ ..+.++++. |+++.+..| |.|+. -..-...+..+.+......++..+|+..+.
T Consensus 36 ~PTG~lHlGh~v-~~---~~~~~lq~~-g~~~~~~Ia-D~~a~-------~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~ 102 (306)
T d1j1ua_ 36 EPSGKIHLGHYL-QI---KKMIDLQNA-GFDIIILLA-DLHAY-------LNQKGELDEIRKIGDYNKKVFEAMGLKAKY 102 (306)
T ss_dssp CCCSSCBHHHHH-HH---HHHHHHHHT-TEEEEEEEC-HHHHH-------HTTCCCHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCCcchHHHHH-HH---HHHHHHHHC-CCcEEEEec-cHHHH-------hhhccchhhhhhhhhHHHHHHHhhhccccc
Confidence 357999999987 33 345566554 998887665 22221 111223445556666667788889987765
Q ss_pred cCC
Q psy7266 371 FGR 373 (1175)
Q Consensus 371 ~~~ 373 (1175)
+..
T Consensus 103 ~~~ 105 (306)
T d1j1ua_ 103 VYG 105 (306)
T ss_dssp EEG
T ss_pred ccc
Confidence 443
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=96.73 E-value=0.0012 Score=72.63 Aligned_cols=66 Identities=12% Similarity=-0.030 Sum_probs=39.6
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeeceeecCCC-cccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYLNYEDG-KFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l~~~G~-KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
+..+|.|+.+++..- --+..- ++...+..+.+.-+...+|+ |||||.||.|+..| +++.++=++++
T Consensus 186 ~vp~G~DQ~~~i~l~-Rdla~r--~~~~~~~~~~~p~L~gldG~~KMSKS~~naI~L~d------sp~~i~~Ki~~ 252 (343)
T d1h3fa1 186 VEMGGTDQRFNLLVG-REVQRA--YGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE------PPEAMFKKLMR 252 (343)
T ss_dssp EEEEEGGGHHHHHHH-HHHHHH--TTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS------CHHHHHHHHHT
T ss_pred ccccccchHHHHHHH-HHHHhh--cCccccceeeccccccccccchhhcccccceeeec------hhHHHHHHHhc
Confidence 788999997654331 112222 23444444443333368885 99999999998874 35556544554
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=96.68 E-value=0.0012 Score=55.18 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=53.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCHHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSANQSCLY 64 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS~aI~~Y 64 (1175)
++||+.+.||+|.+++-+|...|++|+.+.++..... .+...++|.+ ..||..|.+...+.+|
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i-~i~g~~IGG~~el~~y 74 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVSVRAVSGRTTVPQV-FIGGKHIGGSDDLEKY 74 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEETTTTCCHHHHHHHTCCSSSCEE-EETTEEEESHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCeEEEEccCcHHHHHHHHHhCCccCCEE-EECCEEEEChHHHhhC
Confidence 4799999999999999999999999999888765421 4567799999 5788999999888776
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=95.57 E-value=0.0087 Score=50.68 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=52.9
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+++|+.+.||+|.++..+|...|++|+.+.++..... .....++|.+ ..||..|.+...+.++..
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i-~i~~~~IGG~~el~~l~~ 73 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQI-FIDAQHIGGYDDLYALDA 73 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEE-EETTEEEESHHHHHHHHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHhCCCCCCeE-EECCEEEecHHHHHHHHH
Confidence 4799999999999999999999999999888755421 2356789999 578889998877776553
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=95.14 E-value=0.012 Score=48.76 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=45.3
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeC
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFS 57 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~e 57 (1175)
++||+.+.||+|.+++.+|...|++|+.+.++..... .....++|++. .||..|.+
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~-i~g~~igG 63 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALGYVQAPVVE-VDGEHWSG 63 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHTTCBCCCEEE-ETTEEEES
T ss_pred EEEEeCCCChhHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHhCCCCcCEEE-ECCEEEeC
Confidence 4789999999999999999999999999988765421 23566899995 67777754
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.017 Score=47.97 Aligned_cols=64 Identities=13% Similarity=-0.006 Sum_probs=48.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCCcEEEEecCcccc-----cCCCCcccEEEeCCCcEEeCH-HHHHHHH
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTKLDVELVDVADAR-----LLLSKTVPVLELDDGSQLFSA-NQSCLYL 65 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~-----~~P~g~vP~L~~~dG~~l~eS-~aI~~YL 65 (1175)
+++|+.+.||+|.++.-.|...|++|+.+.++..... .....++|+++ .||..|.+- ...++.|
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~-i~~~~i~Gf~~d~i~~L 72 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVI-AGDLSWSGFRPDMINRL 72 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHTTCCSSCEEE-ETTEEEESCCHHHHGGG
T ss_pred EEEEeCCCCccHHHHHHHHHhcCceeEEEeecCCHHHHHHHHhcCCCCCCEEE-ECCEEEECCCHHHHHHH
Confidence 4789999999999999999999999999888765421 12466899996 677777652 2344444
|
| >d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=94.07 E-value=0.34 Score=44.05 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Q psy7266 658 INRALSFIEKNYGSTIPEI-SPIHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQ 727 (1175)
Q Consensus 658 ~~r~~~~~~~~~~~~~p~~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~k 727 (1175)
.-|+.+++.+.-....+.. ..++.++.++..+..+...+.++.++++++..+..++++++.+|.|++.++
T Consensus 11 ~AR~~SIl~k~~~~~~~~~~~~~~~E~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La~~F~~fY~~~~ 81 (126)
T d1iq0a1 11 HARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARE 81 (126)
T ss_dssp HHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHhccccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3488888877543233332 356778889999999999999999999999999999999999999998655
|
| >d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Bacteriophage T4 [TaxId: 10665]
Probab=94.00 E-value=0.075 Score=45.20 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=51.6
Q ss_pred CEEEecCC----CchHHHHHHHHHhcCCCcEEEEecCcccc----------------cCCCCcccEEEeCCCcEEeCHHH
Q psy7266 1 MKCLSNRN----NVQTLKLLITAEFSTTKLDVELVDVADAR----------------LLLSKTVPVLELDDGSQLFSANQ 60 (1175)
Q Consensus 1 m~Ly~~~~----sp~~~~v~ial~~~gi~~e~~~v~~~~~~----------------~~P~g~vP~L~~~dG~~l~eS~a 60 (1175)
+++|+... ||+|.++.-+|...|++|+...++..+.. .....+||.+...||..|-+...
T Consensus 2 ~~Iy~~~~~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~de 81 (87)
T d1abaa_ 2 FKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQ 81 (87)
T ss_dssp EEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHH
T ss_pred EEEEEeCCCCCCChhHHHHHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECHHH
Confidence 46898765 99999999999999999998887654311 13456899996558999999988
Q ss_pred HHHHH
Q psy7266 61 SCLYL 65 (1175)
Q Consensus 61 I~~YL 65 (1175)
..+|+
T Consensus 82 l~e~~ 86 (87)
T d1abaa_ 82 LREYF 86 (87)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88775
|
| >d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.61 E-value=0.73 Score=41.52 Aligned_cols=50 Identities=8% Similarity=0.129 Sum_probs=45.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7266 679 IHEDFLLLALINRELSAYYSVLDKAKLRDGIRYILNISRYCNQYMQTQQP 728 (1175)
Q Consensus 679 ~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~yi~~~kp 728 (1175)
++.++.++..+.++...+..+.++++++..+..+++++..+|.|++.++-
T Consensus 38 ~~~e~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La~~F~~fY~~~~I 87 (124)
T d1f7ua1 38 EPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWV 87 (124)
T ss_dssp SHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45677888899999999999999999999999999999999999998763
|
| >d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: GST C-terminal domain-like superfamily: GST C-terminal domain-like family: Glutathione S-transferase (GST), C-terminal domain domain: Glutaredoxin 2 species: Escherichia coli [TaxId: 562]
Probab=88.59 E-value=0.36 Score=44.28 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhc-CCcccCCCCCccchhHHHHHHHHhhCCCCCCCcccchhHHHHHHHHhcC
Q psy7266 103 DNLKTKLNVLNEAIS-NSFLIENSTTVADICIWTCVYPLLSDSKVRPLLSSYTNITPWYDRISKL 166 (1175)
Q Consensus 103 ~~l~~~L~~Le~~L~-~~fLvG~~lTlADi~l~~~L~~~~~~~~~~~~~~~~p~L~~W~~rl~~~ 166 (1175)
.+++..|..|+..|. .... +..+|+-||.+|+.|+.+..... ..=-|+|.+|+++|++.
T Consensus 70 ~~l~~~L~~L~~ll~~~~~~-~~~ls~DDi~lFp~LR~ltivkg----i~~p~~v~~Y~~~~s~~ 129 (140)
T d1g7oa1 70 KNISDDLRALDKLIVKPNAV-NGELSEDDIQLFPLLRNLTLVAG----INWPSRVADYRDNMAKQ 129 (140)
T ss_dssp HHHHHHHHHHHHHCSSSSCT-TSSCCHHHHHHHHHHHHHHTSTT----SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccc-CCCccHHHHHHHHHHhhhHhhcC----CCCCHHHHHHHHHHHHH
Confidence 466788888888887 5554 44699999999999999764433 12238999999999864
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.92 E-value=0.26 Score=53.86 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=47.5
Q ss_pred CCCcEEEEccCCCCCCC-CCCchhhhhhHHhHHHHHHHHHc-CCCcccccccCCcchHHHHHHHHcCCCchhhHHHHHHH
Q psy7266 279 NENNILITSALPYVNNV-PHLGNIIGCVLSADVFSRFCRLV-NRNTLYVSGTDEYGTATETKALEEGLTPRQICDKYFAI 356 (1175)
Q Consensus 279 ~~~~~~i~~~~Py~nG~-lHiGH~~~~~l~~D~~aR~~r~~-G~~v~~~~G~D~~G~~ie~~a~~~g~~p~~~~~~~~~~ 356 (1175)
.+++|+|.++. -|||. +||||..... . .|+.... |.+|. ++..|.|-. .....++.+ ++++...
T Consensus 71 ~gkp~~vytG~-~PSg~~lHlGh~v~~~----~-~~~~q~~~~~~v~-i~iaD~~a~------~~~~~~~~e-~~~~~~e 136 (386)
T d1r6ta2 71 NKKPFYLYTGR-GPSSEAMHVGHLIPFI----F-TKWLQDVFNVPLV-IQMTDDEKY------LWKDLTLDQ-AYGDAVE 136 (386)
T ss_dssp TTCCEEEEEEE-CCCTTCCBGGGHHHHH----H-HHHHHHHHTCCEE-EEECHHHHH------HHSSCCHHH-HHHHHHH
T ss_pred cCCCeEEEecc-CCCCchhHHHHHHHHH----H-HHHHHHhcccceE-EEecchHhh------hcccCCHHH-HHHHHHH
Confidence 34678887776 68996 8999999532 2 4555544 55555 455565421 123455544 3445555
Q ss_pred HHHHHhhccccccc
Q psy7266 357 HREVYEWFEIDFDY 370 (1175)
Q Consensus 357 ~~~~~~~lgi~~D~ 370 (1175)
...++-.+|++++.
T Consensus 137 ~~~~~lA~GlDp~k 150 (386)
T d1r6ta2 137 NAKDIIACGFDINK 150 (386)
T ss_dssp HHHHHHTTCCCTTS
T ss_pred HHHHHHHhCCCccc
Confidence 56667778888763
|
| >d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=86.76 E-value=0.31 Score=51.78 Aligned_cols=69 Identities=13% Similarity=0.020 Sum_probs=41.1
Q ss_pred EEEeeccccchhHhHHHHHHHHhCCCcccCeEEEeecee-ecCCCcccccCCCccCchhhhhcCCCchhHHHHHHh
Q psy7266 553 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATEYL-NYEDGKFSKSRGTGVFGNNAKDTGLPADIFRFYLLY 627 (1175)
Q Consensus 553 ~~~~GkD~i~fh~~~~pa~l~~~~~~~~~p~~i~~~g~l-~~~G~KMSKS~GN~v~~~d~i~~~~gaDalR~~ll~ 627 (1175)
++++|.|+-+.+..=. -++...+ ...+-.+++.-++ ..+|+|||||.||.|+.++-. -++.-+.-++++
T Consensus 188 iqiGGsDQ~~Ni~~Gr-dl~~~~~--~~~~~~~it~pLl~~~~G~Km~KS~~n~i~l~~~~---tsP~~~y~k~~n 257 (323)
T d1jila_ 188 IQVGGSDQWGNITSGI-ELMRRMY--GQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDAEK---TSPYEFYQFWIN 257 (323)
T ss_dssp EEEEEGGGHHHHHHHH-HHHHHHH--CCCCCEEEEECCCBCTTSCBTTBCSSSBCBSSTTT---SCHHHHHHHHHT
T ss_pred hhhhccccHHHhhhhh-hhhhhhc--ccccceEEecccccchhhhhhhhcCCCCeeeeccc---CChHHHHHHhhc
Confidence 7899999976554311 1112111 1224455666666 478999999999999987632 234444444443
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| >d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.75 E-value=0.53 Score=41.46 Aligned_cols=59 Identities=8% Similarity=-0.096 Sum_probs=47.8
Q ss_pred CCCchHHHHHHHHHhcCCCcEEEEecCcccc------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 7 RNNVQTLKLLITAEFSTTKLDVELVDVADAR------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 7 ~~sp~~~~v~ial~~~gi~~e~~~v~~~~~~------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
|.||||.++.-+|...|++|+.+.++-.... .....+||.+ +.+|..|-+...++++..
T Consensus 28 p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqI-Fi~g~~IGG~ddl~~l~~ 92 (109)
T d1wika_ 28 AKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQL-YVRGDLVGGLDIVKELKD 92 (109)
T ss_dssp CCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEE-ECSSSEEECHHHHHHHHH
T ss_pred CCChHHHHHHHHHHhcCCCceEEEecccHHHHHHHHHhcCCCCCCeE-EECCEEEcCHHHHHHHHH
Confidence 7799999999999999999998877654311 2356689999 689999999988887754
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=85.51 E-value=0.51 Score=38.53 Aligned_cols=66 Identities=15% Similarity=0.050 Sum_probs=42.7
Q ss_pred CEEEecCCCchHHHHHHHH-HhcCCCcEEEEecCcccccCC-CCcccEEEeCCCcEEe---CHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITA-EFSTTKLDVELVDVADARLLL-SKTVPVLELDDGSQLF---SANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial-~~~gi~~e~~~v~~~~~~~~P-~g~vP~L~~~dG~~l~---eS~aI~~YL~ 66 (1175)
++||+-++|+.|..+.-.+ ...+++++.+.|+-...-..- .-.||||..+++..+. +...+.++|.
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~~~~~~~~~vdI~~d~~l~~~y~~~IPVl~~~~~~~l~w~fd~~~l~~~L~ 72 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDDAALESAYGLRVPVLRDPMGRELDWPFDAPRLRAWLD 72 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCCEEEEECTTCHHHHHHHTTTCSEEECTTCCEEESCCCHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhccCCcEEEEEccCCHHHHHHhCCeeeEEEECCeeEEcCccCHHHHHHHHh
Confidence 5899999999998776544 445777777666633211110 1359999777776554 6666666653
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.79 E-value=0.6 Score=40.75 Aligned_cols=65 Identities=11% Similarity=-0.053 Sum_probs=48.2
Q ss_pred CEEEecCCCchHHHHHHHHHhcCCC---cEEEEecCcccc---------cCCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNVQTLKLLITAEFSTTK---LDVELVDVADAR---------LLLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp~~~~v~ial~~~gi~---~e~~~v~~~~~~---------~~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+.+|+.+.||+|.++.-+|...|++ +++..++..... .....++|.+ +.+|..|-+...+..+..
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqI-fi~g~~IGG~~el~~l~~ 90 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRV-FIGKECIGGCTDLESMHK 90 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE-EETTEEEESHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEE-EECCEEEecHHHHHHHHH
Confidence 3689999999999999999999987 445555543311 2245689999 588899998887766543
|
| >d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: SH3BGR (SH3-binding, glutamic acid-rich protein-like) domain: SH3BGRL3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.39 E-value=1.1 Score=37.99 Aligned_cols=65 Identities=9% Similarity=-0.017 Sum_probs=50.2
Q ss_pred CEEEecCCCc------hHHHHHHHHHhcCCCcEEEEecCcccc------c--CCCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 1 MKCLSNRNNV------QTLKLLITAEFSTTKLDVELVDVADAR------L--LLSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 1 m~Ly~~~~sp------~~~~v~ial~~~gi~~e~~~v~~~~~~------~--~P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
+++|....|+ ++.++..+|...|++|+.+.++..... . .+..++|.+ +.||..|-+...+..+..
T Consensus 4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqi-fv~~~~iGg~del~~~~e 82 (93)
T d1t1va_ 4 LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQI-VNGNHYCGDYELFVEAVE 82 (93)
T ss_dssp EEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEE-EETTEEEEEHHHHHHHHH
T ss_pred EEEEEccCcCChhhHHHHHHHHHHHHHCCCceEEEEecCchhHHHHHHHhccCCCceeEEE-EECCEEEecHHHHHHHHH
Confidence 4789888884 899999999999999999888764321 2 244578988 688899998877776654
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| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=81.60 E-value=0.9 Score=37.82 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=45.4
Q ss_pred EEEecCCCchHHHHHHHHHhcCCC---cEEEEecCcccc---------cC-CCCcccEEEeCCCcEEeCHHHHHHHHc
Q psy7266 2 KCLSNRNNVQTLKLLITAEFSTTK---LDVELVDVADAR---------LL-LSKTVPVLELDDGSQLFSANQSCLYLS 66 (1175)
Q Consensus 2 ~Ly~~~~sp~~~~v~ial~~~gi~---~e~~~v~~~~~~---------~~-P~g~vP~L~~~dG~~l~eS~aI~~YL~ 66 (1175)
.+|+.+.||+|.++.-+|...|++ +++..++..... .. +..++|.+ ..||..|.+...+..|+.
T Consensus 4 viysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqI-fi~g~~IGG~~el~~~~~ 80 (85)
T d1egoa_ 4 VIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI-FVDQQHIGGYTDFAAWVK 80 (85)
T ss_dssp EEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE-EETTEEEESSHHHHHHHH
T ss_pred EEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEE-EECCEEEECHHHHHHHHH
Confidence 579999999999999999886643 334444432211 12 33579999 578899999888888764
|