Psyllid ID: psy7270

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQMKLSIGRRE
ccccEEEEEEccccHHHHHcccccEEEEEccEEEEEcccccccccccccEEEccEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHcHHHHHcccccccccccEEEEEEEEEEEEcccccccEEEEEccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccEEEEEEEcccccHHHccccEEEEEEcccEEEEEcccccccccccccEEEEEcEEEEccEEEcccccHHHHHHHHcHHHHHHHHcccEEEEEEEccccccHHHHHcEcccccccEcHHHHHHHHHHHHHHHHHHHHcccccccccEcEEEcccccEEEcccccEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHcEEEEEEEEEEEEccccccccccEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHcHcccccccccccccccccHHHcHHHHHcHHHcccccEEEEEEEEccEHHHHHHHHHHHHHHHHHHccEcccccccccccccccccHHHHHHHHHHHHHccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MSSVKVAVrvrpfnnreisRDCKSIIEMTgnttviinpklppeskdthknfnfdysyyshdpsasnfatqAMVYSDIGEEMLEHAFEGYNVCifaygqtgagksytmmgrqevegeegiiPMICQDLFKRIKDTTNDKLksrwknsnlrvrehpllgpyvedLSKLAVTCYRDIHDLIDEGNKARTVAATnmnetssrshAVFTIFFTQQAVDDMTDLTTEKVSKISLVdlagseradstgakgtrlkeganiNKSLTTLGKVISALAEISAVQHVAKKkkkadfipyrDSVLTWLLRenlggnsktAMIAAispadinydetlSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMaetpnagenvdwdFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQMKLSIGRRE
mssvkvavrvrpfnnreisrdcKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTtndklksrwknsnlrvrehpllgpyveDLSKLAVTCYRDIHDLIDEGNKARTVAATNmnetssrshAVFTIFFTQQAVDDMTDLTTEKVSKislvdlagseradstgakgtrlkeganinkSLTTLGKVISALAEISAVQHvakkkkkadfipyrDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREkneadqafeqqrksslrriskqmklsigrre
MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVakkkkkaDFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQMKLSIGRRE
********RVRPFNNREISRDCKSIIEMTGNTTVIINP***********NFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTV************HAVFTIFFTQQAVDDMTDLTTEKVSKISLVD*************************SLTTLGKVISALAEI**************FIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGI*********************NVDWDFAQVELL********************************************************
MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVI***************FNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKL**********VREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQ**************SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE***************FIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRL**************************************************************************************************
MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAV********KADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYK*********************************
*SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATN*NETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLAG*******************INKSLTTLGKVISALAEIS************DFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGI********************ENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQMKLSI****
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MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIMSKMAETPNAGENVDWDFAQVELLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSLRRISKQMKLSIGRRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
UNIPROTKB|F8W8V9 1471 KIF1A "Kinesin-like protein KI 0.516 0.161 0.764 3.9e-160
UNIPROTKB|E2RN64 1812 KIF1A "Uncharacterized protein 0.516 0.130 0.764 5.5e-159
UNIPROTKB|F1MLY0 1792 KIF1A "Uncharacterized protein 0.516 0.132 0.760 1.7e-158
UNIPROTKB|F1SHW6 1624 KIF1A "Uncharacterized protein 0.533 0.150 0.722 7.2e-156
UNIPROTKB|E1BBN7 1818 Bt.102812 "Uncharacterized pro 0.535 0.135 0.736 2.6e-152
UNIPROTKB|E2R9C4 1815 KIF1B "Uncharacterized protein 0.533 0.134 0.738 8.4e-151
UNIPROTKB|D4A984 688 Kif1b "Kinesin-like protein KI 0.782 0.521 0.700 1.4e-150
ZFIN|ZDB-GENE-070912-480 1785 kif1ab "kinesin family member 0.782 0.201 0.694 2.2e-150
UNIPROTKB|H9GWG2 1690 KIF1A "Uncharacterized protein 0.692 0.188 0.590 1.4e-141
UNIPROTKB|Q12756 1690 KIF1A "Kinesin-like protein KI 0.692 0.188 0.590 1.4e-141
UNIPROTKB|F8W8V9 KIF1A "Kinesin-like protein KIF1A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 908 (324.7 bits), Expect = 3.9e-160, Sum P(3) = 3.9e-160
 Identities = 185/242 (76%), Positives = 204/242 (84%)

Query:   129 KRIKDTTNDKLKSRWKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVA 188
             +R++D  N K K      NLRVREHPLLGPYVEDLSKLAVT Y DI DL+D GNKARTVA
Sbjct:   152 ERVRDLLNPKNKG-----NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVA 206

Query:   189 ATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLK 248
             ATNMNETSSRSHAVF I FTQ+  D  T++TTEKVSKISLVDLAGSERADSTGAKGTRLK
Sbjct:   207 ATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLK 266

Query:   249 EGANINKSLTTLGKVISALAEISAVQHVXXXXXXXDFIPYRDSVLTWLLRENLGGNSKTA 308
             EGANINKSLTTLGKVISALAE+ +  +        DFIPYRDSVLTWLLRENLGGNS+TA
Sbjct:   267 EGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTA 326

Query:   309 MIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQE 368
             M+AA+SPADINYDETLSTLRYADRAKQI C A++NED N KLIRELK+E+ RLRDLL  +
Sbjct:   327 MVAALSPADINYDETLSTLRYADRAKQIRCNAVINEDPNNKLIRELKDEVTRLRDLLYAQ 386

Query:   369 GI 370
             G+
Sbjct:   387 GL 388
GO:0003777 "microtubule motor activity" evidence=IEA
GO:0005875 "microtubule associated complex" evidence=IEA
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005874 "microtubule" evidence=IEA
UNIPROTKB|E2RN64 KIF1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MLY0 KIF1A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SHW6 KIF1A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BBN7 Bt.102812 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9C4 KIF1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4A984 Kif1b "Kinesin-like protein KIF1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-480 kif1ab "kinesin family member 1Ab" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|H9GWG2 KIF1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q12756 KIF1A "Kinesin-like protein KIF1A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
cd01365356 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K 0.0
smart00129335 smart00129, KISc, Kinesin motor, catalytic domain 1e-143
pfam00225326 pfam00225, Kinesin, Kinesin motor domain 1e-135
cd00106328 cd00106, KISc, Kinesin motor domain 1e-131
cd01371333 cd01371, KISc_KIF3, Kinesin motor domain, kinesins 1e-109
cd01372341 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik 1e-105
cd01369325 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine 1e-104
cd01366329 cd01366, KISc_C_terminal, Kinesin motor domain, KI 6e-99
cd01370338 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP 1e-97
cd01374321 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E 3e-92
cd01373337 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP 3e-84
cd01364352 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC 5e-84
cd01367322 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF 7e-72
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 3e-70
COG5059 568 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] 2e-69
PLN03188 1320 PLN03188, PLN03188, kinesin-12 family protein; Pro 4e-68
cd01368345 cd01368, KISc_KIF23_like, Kinesin motor domain, KI 3e-63
cd01375334 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF 1e-62
cd01376319 cd01376, KISc_KID_like, Kinesin motor domain, KIF2 5e-56
PRK11448 1123 PRK11448, hsdR, type I restriction enzyme EcoKI su 0.001
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins Back     alignment and domain information 
 Score =  566 bits (1462), Expect = 0.0
 Identities = 230/363 (63%), Positives = 280/363 (77%), Gaps = 28/363 (7%)

Query: 2   SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
           ++VKVAVRVRPFN+RE +R  K I++M G  T + NPK    ++   K+F+FD+SY+SHD
Sbjct: 1   ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHD 60

Query: 62  PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIP 121
               ++A+Q  V+ D+G E+L+HAFEGYNVC+FAYGQTG+GKSYTMMG +E   E+GIIP
Sbjct: 61  SEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIP 117

Query: 122 MICQDLFKRIKDTTNDKL---------------------KSRWKNSNLRVREHPLLGPYV 160
            +C++LF+RI+      L                       +    NL+VREHP+LGPYV
Sbjct: 118 RLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYV 177

Query: 161 EDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTT 220
           EDLSK+AVT Y DI +L++EGNK+RT A+TNMN+TSSRSHAVFTI  TQ+ +D  TDLTT
Sbjct: 178 EDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTT 237

Query: 221 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKK 280
           EKVSKISLVDLAGSERA STGA+G RLKEG+NINKSLTTLGKVISALA+ S+    AK K
Sbjct: 238 EKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSS----AKSK 293

Query: 281 KKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKA 340
           KK+ FIPYRDSVLTWLL+ENLGGNSKTAMIA ISPADINY+ETLSTLRYADRAK+IV  A
Sbjct: 294 KKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVA 353

Query: 341 IVN 343
           +VN
Sbjct: 354 VVN 356

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain Back     alignment and domain information
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional Back     alignment and domain information
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 459
KOG0245|consensus 1221 100.0
KOG4280|consensus 574 100.0
KOG0243|consensus 1041 100.0
KOG0241|consensus 1714 100.0
KOG0240|consensus 607 100.0
PLN03188 1320 kinesin-12 family protein; Provisional 100.0
KOG0242|consensus 675 100.0
cd01365356 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p 100.0
cd01370338 KISc_KIP3_like Kinesin motor domain, KIP3-like sub 100.0
cd01373337 KISc_KLP2_like Kinesin motor domain, KLP2-like sub 100.0
cd01368345 KISc_KIF23_like Kinesin motor domain, KIF23-like s 100.0
cd01364352 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind 100.0
cd01371333 KISc_KIF3 Kinesin motor domain, kinesins II or KIF 100.0
cd01367322 KISc_KIF2_like Kinesin motor domain, KIF2-like gro 100.0
cd01369325 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy 100.0
cd01376319 KISc_KID_like Kinesin motor domain, KIF22/Kid-like 100.0
cd01374321 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like 100.0
cd01372341 KISc_KIF4 Kinesin motor domain, KIF4-like subfamil 100.0
cd01375334 KISc_KIF9_like Kinesin motor domain, KIF9-like sub 100.0
cd01366329 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ 100.0
KOG0239|consensus670 100.0
smart00129335 KISc Kinesin motor, catalytic domain. ATPase. Micr 100.0
cd00106328 KISc Kinesin motor domain. This catalytic (head) d 100.0
PF00225335 Kinesin: Kinesin motor domain; InterPro: IPR001752 100.0
KOG0244|consensus 913 100.0
KOG0246|consensus676 100.0
KOG0247|consensus 809 100.0
COG5059 568 KIP1 Kinesin-like protein [Cytoskeleton] 100.0
cd01363186 Motor_domain Myosin and Kinesin motor domain. Thes 100.0
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 97.97
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 95.16
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.55
PRK06620214 hypothetical protein; Validated 93.34
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 93.22
PRK06893229 DNA replication initiation factor; Validated 93.21
PRK06526254 transposase; Provisional 93.12
smart00053240 DYNc Dynamin, GTPase. Large GTPases that mediate v 92.76
PRK08181269 transposase; Validated 92.46
PRK14086617 dnaA chromosomal replication initiation protein; P 92.32
PRK06835329 DNA replication protein DnaC; Validated 92.2
PF04851184 ResIII: Type III restriction enzyme, res subunit; 91.6
PF09726 697 Macoilin: Transmembrane protein; InterPro: IPR0191 91.4
COG0556 663 UvrB Helicase subunit of the DNA excision repair c 91.26
PRK09087226 hypothetical protein; Validated 90.85
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 90.51
PRK12377248 putative replication protein; Provisional 90.48
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 90.43
PRK05642234 DNA replication initiation factor; Validated 90.42
TIGR02928365 orc1/cdc6 family replication initiation protein. M 90.41
PF1324576 AAA_19: Part of AAA domain 90.25
PRK00411394 cdc6 cell division control protein 6; Reviewed 90.05
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 90.0
PRK07952244 DNA replication protein DnaC; Validated 89.72
PRK08084235 DNA replication initiation factor; Provisional 89.62
PRK08116268 hypothetical protein; Validated 89.43
PRK14088440 dnaA chromosomal replication initiation protein; P 89.33
PRK10436462 hypothetical protein; Provisional 89.3
PRK00149450 dnaA chromosomal replication initiation protein; R 89.25
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 88.84
TIGR00362405 DnaA chromosomal replication initiator protein Dna 88.81
PRK08727233 hypothetical protein; Validated 88.65
TIGR02533486 type_II_gspE general secretory pathway protein E. 88.55
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 88.28
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 87.99
KOG0989|consensus346 87.95
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 87.7
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 87.53
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 87.52
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 87.32
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 87.28
COG1484254 DnaC DNA replication protein [DNA replication, rec 87.02
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 87.02
PRK08939306 primosomal protein DnaI; Reviewed 86.83
PRK08903227 DnaA regulatory inactivator Hda; Validated 86.81
smart00382148 AAA ATPases associated with a variety of cellular 86.29
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 86.28
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 86.27
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 86.22
PRK14087450 dnaA chromosomal replication initiation protein; P 85.9
PF00063 689 Myosin_head: Myosin head (motor domain); InterPro: 85.79
COG0593408 DnaA ATPase involved in DNA replication initiation 85.76
COG5008375 PilU Tfp pilus assembly protein, ATPase PilU [Cell 85.62
PTZ001121164 origin recognition complex 1 protein; Provisional 85.19
PF01935229 DUF87: Domain of unknown function DUF87; InterPro: 85.15
PF12846304 AAA_10: AAA-like domain 84.75
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 84.54
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 84.49
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 83.75
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 83.5
PF09731 582 Mitofilin: Mitochondrial inner membrane protein; I 83.29
PRK10884206 SH3 domain-containing protein; Provisional 83.17
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 82.88
cd01382 717 MYSc_type_VI Myosin motor domain, type VI myosins. 82.85
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 82.8
PRK09183259 transposase/IS protein; Provisional 82.67
PF13479213 AAA_24: AAA domain 82.31
PF00004132 AAA: ATPase family associated with various cellula 82.13
PRK12402337 replication factor C small subunit 2; Reviewed 81.87
PRK06921266 hypothetical protein; Provisional 81.8
PRK13894319 conjugal transfer ATPase TrbB; Provisional 81.73
PHA00729226 NTP-binding motif containing protein 81.55
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 81.39
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 81.19
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 80.63
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 80.54
PRK13833323 conjugal transfer protein TrbB; Provisional 80.43
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 80.39
KOG0926|consensus 1172 80.34
cd01378 674 MYSc_type_I Myosin motor domain, type I myosins. M 80.28
PHA02244383 ATPase-like protein 80.27
>KOG0245|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.3e-101  Score=812.31  Aligned_cols=358  Identities=73%  Similarity=1.076  Sum_probs=334.1

Q ss_pred             CCCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHH
Q psy7270           1 MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEE   80 (459)
Q Consensus         1 m~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~p   80 (459)
                      +++|+|+|||||++.+|....+.+|+.+.++.+.++++..+.   + ...|+||+.||+||+.++.+|+|..||+.++.|
T Consensus         3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k---~-~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~   78 (1221)
T KOG0245|consen    3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSK---D-APKFTFDYSYWSHDSEDPHFASQKQVYEDLGRE   78 (1221)
T ss_pred             CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcc---c-CCceecceeeecCCCCCCchhhHHHHHHHHhHH
Confidence            478999999999999999999999999999999999876542   2 334999999999999999999999999999999


Q ss_pred             HHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCcceec------------------
Q psy7270          81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSR------------------  142 (459)
Q Consensus        81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~------------------  142 (459)
                      +++.+|+|||+||||||||||||||||+|.+. ++.+|||||+|++||.+|.+.....+.|.                  
T Consensus        79 mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~-~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~  157 (1221)
T KOG0245|consen   79 MLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQE-PDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLN  157 (1221)
T ss_pred             HHHHHhcccceEEEEeccCCCCcceeeeccCC-CCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhh
Confidence            99999999999999999999999999999873 46799999999999999998776665543                  


Q ss_pred             --ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccc
Q psy7270         143 --WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTT  220 (459)
Q Consensus       143 --~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~  220 (459)
                        ...++|++||+|..|+||++|+.+.|+|+.|+..++..|++.|.+++|.||+.|||||+||+|.+.|...+...+..+
T Consensus       158 ~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~s  237 (1221)
T KOG0245|consen  158 APKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDS  237 (1221)
T ss_pred             CCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcc
Confidence              356789999999999999999999999999999999999999999999999999999999999999998888777788


Q ss_pred             eeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhc
Q psy7270         221 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLREN  300 (459)
Q Consensus       221 ~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ds  300 (459)
                      .++|||+|||||||||++.+++.|+|++||++|||||.+||+||.||++..+     .++++..+||||||-||+||+++
T Consensus       238 ek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~-----~k~~ks~fIPYRDSVLTWLLkEn  312 (1221)
T KOG0245|consen  238 EKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQK-----GKKKKSDFIPYRDSVLTWLLKEN  312 (1221)
T ss_pred             eeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhc-----cCCCCCccccchHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999998643     34567779999999999999999


Q ss_pred             cCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHHHHHhh
Q psy7270         301 LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQE  368 (459)
Q Consensus       301 LgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~  368 (459)
                      |||||||+|||+|||++.||+|||+|||||.|||.|+|+++||+|+++++|++|++||.+||..|...
T Consensus       313 LGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~  380 (1221)
T KOG0245|consen  313 LGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQ  380 (1221)
T ss_pred             cCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999887543

>KOG4280|consensus Back     alignment and domain information
>KOG0243|consensus Back     alignment and domain information
>KOG0241|consensus Back     alignment and domain information
>KOG0240|consensus Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>KOG0242|consensus Back     alignment and domain information
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group Back     alignment and domain information
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>KOG0239|consensus Back     alignment and domain information
>smart00129 KISc Kinesin motor, catalytic domain Back     alignment and domain information
>cd00106 KISc Kinesin motor domain Back     alignment and domain information
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information
>KOG0244|consensus Back     alignment and domain information
>KOG0246|consensus Back     alignment and domain information
>KOG0247|consensus Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01363 Motor_domain Myosin and Kinesin motor domain Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>smart00053 DYNc Dynamin, GTPase Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>KOG0989|consensus Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PF13479 AAA_24: AAA domain Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>KOG0926|consensus Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 0.0
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 0.0
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 0.0
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 0.0
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 0.0
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 0.0
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 0.0
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 0.0
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 1e-179
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 1e-173
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 1e-171
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 1e-166
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 1e-165
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 1e-162
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 1e-161
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 1e-156
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 1e-155
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 1e-154
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 1e-152
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 1e-151
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 1e-148
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 1e-136
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 1e-133
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 1e-131
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 1e-128
3u06_A412 Protein claret segregational; motor domain, stalk 1e-127
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 7e-45
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 1e-44
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 6e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 Back     alignment and structure
 Score =  604 bits (1561), Expect = 0.0
 Identities = 260/366 (71%), Positives = 294/366 (80%), Gaps = 24/366 (6%)

Query: 2   SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
           +SVKVAVRVRPFN+RE+SRD K II+M+G+TT I+NPK   + K+T K+F+FDYSY+SH 
Sbjct: 4   ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPK---QPKETPKSFSFDYSYWSHT 60

Query: 62  -PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGII 120
            P   N+A+Q  VY DIGEEML+HAFEGYNVCIFAYGQTGAGKSYTMMG+QE + ++GII
Sbjct: 61  SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE-KDQQGII 119

Query: 121 PMICQDLFKRIKDTTNDKLK-------------------SRWKNSNLRVREHPLLGPYVE 161
           P +C+DLF RI DTTND +                    +     NLRVREHPLLGPYVE
Sbjct: 120 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVE 179

Query: 162 DLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221
           DLSKLAVT Y DI DL+D GNK RTVAATNMNETSSRSHAVF I FTQ+  D  T++TTE
Sbjct: 180 DLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239

Query: 222 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKK 281
           KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE+ +  +  KKKK
Sbjct: 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 299

Query: 282 KADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAI 341
           K DFIPYRDSVLTWLLRENLGGNS+TAM+AA+SPADINYDETLSTLRYADRAKQI     
Sbjct: 300 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVS 359

Query: 342 VNEDAN 347
           VN   +
Sbjct: 360 VNHHHH 365
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 100.0
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 100.0
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 100.0
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 100.0
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 100.0
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 100.0
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 100.0
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 100.0
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 100.0
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 100.0
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 100.0
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 100.0
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 100.0
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 100.0
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 100.0
3nwn_A359 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 100.0
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 100.0
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 100.0
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 100.0
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 100.0
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 100.0
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 100.0
3u06_A412 Protein claret segregational; motor domain, stalk 100.0
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 100.0
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 100.0
4h1g_A715 Maltose binding protein-cakar3 motor domain fusio; 100.0
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 100.0
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 99.97
2o0a_A298 S.cerevisiae chromosome XVI reading frame ORF YPL2 99.75
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 94.19
2qgz_A308 Helicase loader, putative primosome component; str 93.44
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 93.43
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.32
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 91.15
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 91.08
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 90.69
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 90.02
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 89.61
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 89.0
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 88.38
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 88.01
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 87.16
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 87.07
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 86.95
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 86.67
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 86.56
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 86.41
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 86.08
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 85.57
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 85.49
2chg_A226 Replication factor C small subunit; DNA-binding pr 85.42
1p9r_A418 General secretion pathway protein E; bacterial typ 85.27
3bos_A242 Putative DNA replication factor; P-loop containing 85.11
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 85.04
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 84.95
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 84.76
3bor_A237 Human initiation factor 4A-II; translation initiat 84.73
2v1u_A387 Cell division control protein 6 homolog; DNA repli 83.89
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 83.76
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 83.64
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 83.16
2kjq_A149 DNAA-related protein; solution structure, NESG, st 83.06
2r62_A268 Cell division protease FTSH homolog; ATPase domain 83.05
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 82.91
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 82.83
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 82.6
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 82.54
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 82.36
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 82.13
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 82.1
3b6e_A216 Interferon-induced helicase C domain-containing P; 82.02
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 81.9
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 81.65
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 81.55
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 80.96
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 80.94
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 80.79
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 80.72
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 80.69
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 80.47
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 80.28
1tue_A212 Replication protein E1; helicase, replication, E1E 80.1
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 80.05
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Back     alignment and structure
Probab=100.00  E-value=2e-89  Score=692.30  Aligned_cols=341  Identities=77%  Similarity=1.126  Sum_probs=275.8

Q ss_pred             CCCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCC-CCCCCCCCCHHHHHHHHHH
Q psy7270           1 MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSH-DPSASNFATQAMVYSDIGE   79 (459)
Q Consensus         1 m~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~-d~~~~~~~sQ~~vy~~~~~   79 (459)
                      |++|+|+|||||++..|...+..+++.+.++.+++.++...   ....+.|.||+||+++ ++...++++|++||+.++.
T Consensus         3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~---~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~   79 (366)
T 2zfi_A            3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQP---KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGE   79 (366)
T ss_dssp             -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCT---TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHH
T ss_pred             CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCC---CCCceEEecceEeecCccccccccCcHHHHHHHHHH
Confidence            57999999999999999988889999999998888766432   2346899999999986 3344456899999999999


Q ss_pred             HHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc----------------ceecc
Q psy7270          80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK----------------LKSRW  143 (459)
Q Consensus        80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~----------------~~~~~  143 (459)
                      |+|+++++|||+||||||||||||||||+|+.. ...+|||||++++||+.+.+.....                +.++.
T Consensus        80 plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~-~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL  158 (366)
T 2zfi_A           80 EMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL  158 (366)
T ss_dssp             HHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSG-GGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETT
T ss_pred             HHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCc-cCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcc
Confidence            999999999999999999999999999999754 2468999999999999998654322                11222


Q ss_pred             ---cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccc
Q psy7270         144 ---KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTT  220 (459)
Q Consensus       144 ---~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~  220 (459)
                         ....+.+++++..|++|.||+++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...+...+...
T Consensus       159 ~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~  238 (366)
T 2zfi_A          159 NPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT  238 (366)
T ss_dssp             CTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEE
T ss_pred             ccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccc
Confidence               23579999999999999999999999999999999999999999999999999999999999999876655444445


Q ss_pred             eeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhc
Q psy7270         221 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLREN  300 (459)
Q Consensus       221 ~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ds  300 (459)
                      ...|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++.........+.++..||||||||||+||||+
T Consensus       239 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqds  318 (366)
T 2zfi_A          239 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLREN  318 (366)
T ss_dssp             EEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGG
T ss_pred             eeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999975432222223345789999999999999999


Q ss_pred             cCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceeccc
Q psy7270         301 LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNED  345 (459)
Q Consensus       301 LgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~  345 (459)
                      |||||+|+|||||||+..+++||++||+||+|||+|+|+|+++..
T Consensus       319 LgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~~  363 (366)
T 2zfi_A          319 LGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHH  363 (366)
T ss_dssp             SSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC-----------
T ss_pred             hCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCCC
Confidence            999999999999999999999999999999999999999998753
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* Back     alignment and structure
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Back     alignment and structure
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 459
d2zfia1349 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), 1e-108
d1goja_354 c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 3e-87
d1bg2a_323 c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId 5e-86
d1x88a1345 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), 2e-83
d1ry6a_330 c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu 2e-80
d1v8ka_362 c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c 6e-78
d1sdma_364 c.37.1.9 (A:) Kinesin heavy chain-like protein {Po 2e-77
d1f9va_342 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 1e-71
d2ncda_368 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 5e-70
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score =  323 bits (827), Expect = e-108
 Identities = 256/353 (72%), Positives = 289/353 (81%), Gaps = 24/353 (6%)

Query: 2   SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
           +SVKVAVRVRPFN+RE+SRD K II+M+G+TT I+NPK   + K+T K+F+FDYSY+SH 
Sbjct: 1   ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPK---QPKETPKSFSFDYSYWSHT 57

Query: 62  -PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGII 120
            P   N+A+Q  VY DIGEEML+HAFEGYNVCIFAYGQTGAGKSYTMMG+QE + ++GII
Sbjct: 58  SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE-KDQQGII 116

Query: 121 PMICQDLFKRIKDTTNDKLK-------------------SRWKNSNLRVREHPLLGPYVE 161
           P +C+DLF RI DTTND +                    +     NLRVREHPLLGPYVE
Sbjct: 117 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVE 176

Query: 162 DLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221
           DLSKLAVT Y DI DL+D GNK RTVAATNMNETSSRSHAVF I FTQ+  D  T++TTE
Sbjct: 177 DLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 236

Query: 222 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKK 281
           KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE+ +  +  KKKK
Sbjct: 237 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 296

Query: 282 KADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334
           K DFIPYRDSVLTWLLRENLGGNS+TAM+AA+SPADINYDETLSTLRYADRAK
Sbjct: 297 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 Back     information, alignment and structure
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
d1sdma_364 Kinesin heavy chain-like protein {Potato (Solanum 100.0
d2zfia1349 Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 100.0
d1goja_354 Kinesin {Neurospora crassa [TaxId: 5141]} 100.0
d1v8ka_362 Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 100.0
d1x88a1345 Kinesin {Human (Homo sapiens), mitotic kinesin eg5 100.0
d1bg2a_323 Kinesin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ry6a_330 Kinesin {Malaria parasite (Plasmodium falciparum) 100.0
d2ncda_368 Kinesin motor Ncd (non-claret disjunctional) {Frui 100.0
d1f9va_342 Kinesin motor Ncd (non-claret disjunctional) {Bake 100.0
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 95.09
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 93.6
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 92.22
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 91.21
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 90.51
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 89.45
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 88.97
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 88.15
d1okkd2207 GTPase domain of the signal recognition particle r 88.02
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 86.62
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 86.12
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 85.71
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 85.38
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 85.3
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 85.21
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 84.79
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 84.69
d1j8yf2211 GTPase domain of the signal sequence recognition p 84.54
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 84.38
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 84.15
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 83.79
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 83.74
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 83.67
d2qy9a2211 GTPase domain of the signal recognition particle r 83.24
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 82.79
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 82.41
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 82.12
d1vmaa2213 GTPase domain of the signal recognition particle r 82.08
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 81.95
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 81.53
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 81.32
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 81.11
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 80.51
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 80.4
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 80.32
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 80.29
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 80.23
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 80.19
d1ls1a2207 GTPase domain of the signal sequence recognition p 80.11
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=1.4e-80  Score=628.78  Aligned_cols=330  Identities=36%  Similarity=0.567  Sum_probs=278.3

Q ss_pred             CcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHHH
Q psy7270           3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEML   82 (459)
Q Consensus         3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv   82 (459)
                      +|||+|||||+++.|...+...++...++..+......     ...+.|.||+||+++       ++|++||+.+ .|+|
T Consensus         1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~f~FD~vf~~~-------~~q~~vy~~v-~~lv   67 (364)
T d1sdma_           1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKD-----DKAKQHMYDRVFDGN-------ATQDDVFEDT-KYLV   67 (364)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSS-----SSEEEEECSEEECTT-------CCHHHHHHTT-THHH
T ss_pred             CeEEEEEcCCCChhhcccCCCCeEEeCCCCeEEecCCC-----CCceEEECCeecCCC-------CCHHHHHHHH-HHHH
Confidence            58999999999999988887888877766665543322     235899999999765       8999999875 8999


Q ss_pred             HHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc---------------ceecc----
Q psy7270          83 EHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK---------------LKSRW----  143 (459)
Q Consensus        83 ~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~---------------~~~~~----  143 (459)
                      +++++|||+||||||||||||||||+|+..   ++||+||++.+||..+.+.....               +.++.    
T Consensus        68 ~~~l~G~n~~i~aYGqTGSGKTyTm~G~~~---~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~  144 (364)
T d1sdma_          68 QSAVDGYNVCIFAYGQTGSGKTFTIYGADS---NPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQ  144 (364)
T ss_dssp             HHHHTTCEEEEEEECSTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTT
T ss_pred             HHHhcCCceeeeccccCCCCcccccccCcc---ccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCccc
Confidence            999999999999999999999999999865   59999999999999987654321               11111    


Q ss_pred             -cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCcccee
Q psy7270         144 -KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEK  222 (459)
Q Consensus       144 -~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~  222 (459)
                       ....+.+++++..+++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|++.+...+.    ....
T Consensus       145 ~~~~~l~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~----~~~~  220 (364)
T d1sdma_         145 AKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT----QAIA  220 (364)
T ss_dssp             SCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTT----CCEE
T ss_pred             ccccccceeecccCccccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccCc----ceee
Confidence             23357899999999999999999999999999999999999999999999999999999999999876543    3456


Q ss_pred             EeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccC
Q psy7270         223 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLG  302 (459)
Q Consensus       223 ~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLg  302 (459)
                      .|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++            +..|||||+||||+||+|+||
T Consensus       221 ~~kl~~vDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~------------~~~~ipyR~SkLT~lL~d~Lg  288 (364)
T d1sdma_         221 RGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS------------GNQHIPYRNHKLTMLMSDSLG  288 (364)
T ss_dssp             EEEEEEEECCCCSCCCC---------CCCTTCHHHHHHHHHHHHHHH------------TCSCCCGGGCHHHHHTTTTTT
T ss_pred             eEEEEeechhhccccccccccCceeeeccccccchhhHHHHHHHHHc------------CCCcCCchhhhhhHHHHhhcC
Confidence            79999999999999999999999999999999999999999999986            567999999999999999999


Q ss_pred             CCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHHHHH
Q psy7270         303 GNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLK  366 (459)
Q Consensus       303 Gns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~~l~  366 (459)
                      |||+|+|||||||+..+++||++||+||+||++|+|+|++|....  .+.+|++++..|+.++.
T Consensus       289 gns~t~~I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~n~~~~--~~~~l~~~i~~l~~~~~  350 (364)
T d1sdma_         289 GNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSK--EVARLKKLVSYWKEQAG  350 (364)
T ss_dssp             SSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCCCEECH--HHHHHHTTTTCC-----
T ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHHHHHHhhcccCCcccCCHH--HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998764  46677777777776653
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Back     information, alignment and structure
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure