Psyllid ID: psy7291

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPYSA
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHcccccEEEEEcHHcccccccccccccccccEEEcccEEEEEcccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHccccEEEEEcHHHccccccccccccccccEEEcccEEEEEcccEEEccccEEEEEccccEEEEEHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
vvspynseDAKGLLKaairdpdpvvflenellygvqypmgdealskdfvlpigkakvekqgeafyhldapvirvtgkditivGHSKAVETALDAAKILAGQGIDAEVInlrslrpldiETITKSVMKTNYLIsveggwpqcgigseISARIMEIPYSA
Flexible Loop (DISEMBL)
vvspynsedakgllkaairdpdpVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDaevinlrslrpldIETITKSVMKTNYLISveggwpqcgigSEISARIMEIPYSA
Low Complexity Region (SEG)
VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPYSA
Disordered region (IsUnstruct)
*************LKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIM******
Disordered Region (DISOPRED)
VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPYS*
Disordered Region (DISEMBL)
**********KGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPYSA
Disordered Region (DISPRO)
VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPYSA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPYSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
ZFIN|ZDB-GENE-040426-2173	359	pdhb "pyruvate dehydrogenase (	0.886	0.389	0.612	1e-43
UNIPROTKB|F1N823	360	PDHB "Uncharacterized protein"	0.886	0.388	0.6	7.3e-43
FB|FBgn0039635	365	CG11876 [Drosophila melanogast	0.873	0.378	0.620	1.5e-42
UNIPROTKB|E2R268	359	PDHB "Uncharacterized protein"	0.886	0.389	0.6	2.5e-42
RGD|1359146	359	Pdhb "pyruvate dehydrogenase (	0.886	0.389	0.593	3.2e-42
UNIPROTKB|P11966	359	PDHB "Pyruvate dehydrogenase E	0.886	0.389	0.593	5.2e-42
MGI|MGI:1915513	359	Pdhb "pyruvate dehydrogenase (	0.886	0.389	0.593	5.2e-42
UNIPROTKB|P11177	359	PDHB "Pyruvate dehydrogenase E	0.886	0.389	0.580	1.1e-41
UNIPROTKB|Q5RE79	359	PDHB "Pyruvate dehydrogenase E	0.886	0.389	0.580	1.1e-41
UNIPROTKB|J9P208	341	J9P208 "Uncharacterized protei	0.886	0.410	0.587	1.4e-41

ZFIN|ZDB-GENE-040426-2173 pdhb "pyruvate dehydrogenase (lipoamide) beta" [Danio rerio (taxid:7955)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 95/155 (61%), Positives = 118/155 (76%)

Query:     1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
             V+SP+NSEDA+GLLKAAIRD +PVVFLENEL+YGV + M +E  SKDFV+PIGKAK+E+Q
Sbjct:   174 VLSPWNSEDARGLLKAAIRDDNPVVFLENELMYGVPFEMSEEVQSKDFVIPIGKAKIERQ 233

Query:    61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
             G    H            IT+V HS+ V   LDAA +LA +GI+ EVINLRS+RPLD +T
Sbjct:   234 GN---H------------ITLVSHSRMVGLCLDAAAVLAKEGIECEVINLRSIRPLDADT 278

Query:   121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155
             I  S+ KTN+L++VEGGWPQ G+G+EI ARIME P
Sbjct:   279 IETSITKTNHLVTVEGGWPQFGVGAEILARIMEGP 313

GO:0003824 "catalytic activity" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0004738 "pyruvate dehydrogenase activity" evidence=IMP

UNIPROTKB|F1N823 PDHB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/155 (60%), Positives = 119/155 (76%)

Query:     1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
             VVSP++SEDAKGLLKA+IRD +PVV LENELLYGV + M ++A SKDFV+PIGKAK+E++
Sbjct:   175 VVSPWSSEDAKGLLKASIRDDNPVVMLENELLYGVPFEMSEQAQSKDFVVPIGKAKIERE 234

Query:    61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
             G    H            +T+V HS+ V   L+AA ILA +G++ EVINLR++RP+DIET
Sbjct:   235 GT---H------------VTLVAHSRPVGHCLEAASILAKEGVECEVINLRTIRPMDIET 279

Query:   121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155
             +  SV KTN+L++VEGGWPQ G+GSEI ARIME P
Sbjct:   280 VEASVAKTNHLVTVEGGWPQFGVGSEICARIMEGP 314

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

FB|FBgn0039635 CG11876 [Drosophila melanogaster (taxid:7227)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 95/153 (62%), Positives = 117/153 (76%)

Query:     1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
             V+SPY++EDA+GLLK+AIRDPDPVVFLENEL+YG  +P+ D    KDF++PIGKAKV + 
Sbjct:   170 VLSPYDAEDARGLLKSAIRDPDPVVFLENELVYGTAFPVADNVADKDFLVPIGKAKVMR- 228

Query:    61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
                      P     GKDIT+V HSKAVET+L AA  LA +GI+AEVINLRS+RPLD  T
Sbjct:   229 ---------P-----GKDITLVAHSKAVETSLLAAAELAKKGIEAEVINLRSIRPLDTAT 274

Query:   121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
             I  SV KT++L++VE GWPQ G+G+EI ARIME
Sbjct:   275 IFASVRKTHHLVTVENGWPQHGVGAEICARIME 307

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISS

GO:0006090 "pyruvate metabolic process" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

UNIPROTKB|E2R268 PDHB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 93/155 (60%), Positives = 118/155 (76%)

Query:     1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
             VVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV +    EA SKDF++PIGKAK+E+Q
Sbjct:   174 VVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPSEAQSKDFLIPIGKAKIERQ 233

Query:    61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
             G    H            IT+V HS+ V   L+AA +L+ +GI+ EVIN+R++RP+DIET
Sbjct:   234 GT---H------------ITVVAHSRPVGHCLEAATVLSKEGIECEVINMRTIRPMDIET 278

Query:   121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155
             I  SVMKTN+LI+VEGGWPQ G+G+EI ARIME P
Sbjct:   279 IEASVMKTNHLITVEGGWPQFGVGAEICARIMEGP 313

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

RGD|1359146 Pdhb "pyruvate dehydrogenase (lipoamide) beta" [Rattus norvegicus (taxid:10116)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 92/155 (59%), Positives = 118/155 (76%)

Query:     1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
             VVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV + +  EA SKDF++PIGKAK+E+Q
Sbjct:   174 VVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQ 233

Query:    61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
             G    H            IT+V HS+ V   L+AA +L+ +GI+ EVINLR++RP+DIE 
Sbjct:   234 GT---H------------ITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEA 278

Query:   121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155
             I  SVMKTN+L++VEGGWPQ G+G+EI ARIME P
Sbjct:   279 IEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGP 313

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISO;ISS

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISO;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO;ISS

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISO;IDA

UNIPROTKB|P11966 PDHB "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 92/155 (59%), Positives = 119/155 (76%)

Query:     1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
             VVSP++SEDAKGL+K+AIRD +PVV LENEL+YGV + +  EA SKDF++PIGKAK+E+Q
Sbjct:   174 VVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQ 233

Query:    61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
             G    H            +TIV HS+ V   L+AA +L+ +GI+ EVINLR++RP+DIET
Sbjct:   234 GT---H------------VTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIET 278

Query:   121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155
             I  SVMKTN+L++VEGGWPQ G+G+EI ARIME P
Sbjct:   279 IEGSVMKTNHLVTVEGGWPQFGVGAEICARIMEGP 313

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISS

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

MGI|MGI:1915513 Pdhb "pyruvate dehydrogenase (lipoamide) beta" [Mus musculus (taxid:10090)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 92/155 (59%), Positives = 118/155 (76%)

Query:     1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
             VVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV + +  EA SKDF++PIGKAK+E+Q
Sbjct:   174 VVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQ 233

Query:    61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
             G    H            IT+V HS+ V   L+AA +L+ +GI+ EVINLR++RP+DIE 
Sbjct:   234 GT---H------------ITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEA 278

Query:   121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155
             I  SVMKTN+L++VEGGWPQ G+G+EI ARIME P
Sbjct:   279 IEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGP 313

GO:0003824 "catalytic activity" evidence=IEA

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISO

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISO

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|P11177 PDHB "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 90/155 (58%), Positives = 118/155 (76%)

Query:     1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
             VVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV +    EA SKDF++PIGKAK+E+Q
Sbjct:   174 VVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQ 233

Query:    61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
             G    H            IT+V HS+ V   L+AA +L+ +G++ EVIN+R++RP+D+ET
Sbjct:   234 GT---H------------ITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMET 278

Query:   121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155
             I  SVMKTN+L++VEGGWPQ G+G+EI ARIME P
Sbjct:   279 IEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGP 313

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IDA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0004738 "pyruvate dehydrogenase activity" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0010510 "regulation of acetyl-CoA biosynthetic process from pyruvate" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5RE79 PDHB "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 90/155 (58%), Positives = 118/155 (76%)

Query:     1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
             VVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV +    EA SKDF++PIGKAK+E+Q
Sbjct:   174 VVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQ 233

Query:    61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
             G    H            IT+V HS+ V   L+AA +L+ +G++ EVIN+R++RP+D+ET
Sbjct:   234 GT---H------------ITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMET 278

Query:   121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155
             I  SVMKTN+L++VEGGWPQ G+G+EI ARIME P
Sbjct:   279 IEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGP 313

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISS

UNIPROTKB|J9P208 J9P208 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 91/155 (58%), Positives = 116/155 (74%)

Query:     1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
             VVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV +    EA SKDF++P GKAK+E+Q
Sbjct:   156 VVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPSEAQSKDFLIPTGKAKIERQ 215

Query:    61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
             G                 IT+V HS+ V   L+AA +L+ +GI+ EVIN+R++RP+DIET
Sbjct:   216 GTR---------------ITVVAHSRPVGHCLEAATVLSKEGIECEVINMRTIRPMDIET 260

Query:   121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155
             I  SVMKTN+LI+VEGGWPQ G+G+EI ARIME P
Sbjct:   261 IEASVMKTNHLITVEGGWPQFGVGAEICARIMEGP 295

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.2.4	LOW CONFIDENCE prediction!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	158
PLN02683	356	PLN02683, PLN02683, pyruvate dehydrogenase E1 comp	5e-69
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	3e-68
PTZ00182	355	PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro	2e-65
COG0022	324	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena	3e-59
PRK09212	327	PRK09212, PRK09212, pyruvate dehydrogenase subunit	4e-55
CHL00144	327	CHL00144, odpB, pyruvate dehydrogenase E1 componen	2e-31
pfam02780	124	pfam02780, Transketolase_C, Transketolase, C-termi	4e-30
cd07036	167	cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY	6e-14
COG3958	312	COG3958, COG3958, Transketolase, C-terminal subuni	1e-12
COG1154	627	COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [	1e-11
PRK05444	580	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate	1e-10
TIGR00204	617	TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn	3e-09
pfam02779	172	pfam02779, Transket_pyr, Transketolase, pyrimidine	2e-07
PLN02234	641	PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate	7e-06
smart00861	136	smart00861, Transket_pyr, Transketolase, pyrimidin	9e-06
PLN02225	701	PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate	7e-05
PLN02582	677	PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate	2e-04
COG0022	324	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena	3e-04
PRK12571	641	PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate	3e-04
PRK09622	407	PRK09622, porA, pyruvate flavodoxin oxidoreductase	5e-04
PRK05899	586	PRK05899, PRK05899, transketolase; Reviewed	6e-04
TIGR00232	653	TIGR00232, tktlase_bact, transketolase, bacterial	0.001
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.004

>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit beta

 Score =  212 bits (541), Expect = 5e-69
 Identities = 93/153 (60%), Positives = 113/153 (73%), Gaps = 15/153 (9%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
           V++PY+SEDA+GLLKAAIRDPDPVVFLENELLYG  +P+  E L   FVLPIGKAK+E++
Sbjct: 168 VLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIERE 227

Query: 61  GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
                          GKD+TIV  SK V  AL AA+ILA +GI AEVINLRS+RPLD +T
Sbjct: 228 ---------------GKDVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDT 272

Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           I  SV KTN L++VE GWPQ G+G+EI A ++E
Sbjct: 273 INASVRKTNRLVTVEEGWPQHGVGAEICASVVE 305

Length = 356

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  213 bits (544), Expect = 3e-68
 Identities = 86/155 (55%), Positives = 112/155 (72%), Gaps = 22/155 (14%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQY--PMGDEALSKDFVLPIGKAKVE 58
           VV+PY++ DAKGLLKAAIRDP+PV+FLENE+LYG  +  P  D     DFVLPIGKA++ 
Sbjct: 283 VVAPYSAADAKGLLKAAIRDPNPVIFLENEILYGQSFDVPKLD-----DFVLPIGKARIH 337

Query: 59  KQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDI 118
           ++G               KD+TIV  S  +  AL AA+ LA +GIDAEVI+LR++RP+D 
Sbjct: 338 REG---------------KDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDT 382

Query: 119 ETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           ETI +SV KTN L++VE GWPQ G+G+EI+AR+ME
Sbjct: 383 ETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVME 417

Length = 464

>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional

 Score =  202 bits (516), Expect = 2e-65
 Identities = 81/153 (52%), Positives = 99/153 (64%), Gaps = 18/153 (11%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
           VV+P + EDAKGLLKAAIRDP+PVVF E +LLY     +  EA   D+ LP+GKAKV ++
Sbjct: 176 VVAPSDPEDAKGLLKAAIRDPNPVVFFEPKLLYRESVEVVPEA---DYTLPLGKAKVVRE 232

Query: 61  GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
           G               KD+TIVG+   V  AL AA+ LA +GI  EVI+LRSLRP D ET
Sbjct: 233 G---------------KDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRET 277

Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           I KSV KT   + V    P CGIG+EI+A+IME
Sbjct: 278 IVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIME 310

Length = 355

>gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]

 Score =  186 bits (474), Expect = 3e-59
 Identities = 72/153 (47%), Positives = 92/153 (60%), Gaps = 18/153 (11%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
           VV P    DAKGLLKAAIRDPDPV+FLE++ LY        E   +D+ +P+GKAK+ ++
Sbjct: 143 VVMPSTPYDAKGLLKAAIRDPDPVIFLEHKRLYRSF---KGEVPEEDYTIPLGKAKIVRE 199

Query: 61  GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
           G                D+TIV +   V TAL+AA+ L  +GI AEVI+LR+L PLD ET
Sbjct: 200 G---------------SDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSPLDKET 244

Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           I  SV KT  L+ V       GIG+EI+A I E
Sbjct: 245 IIASVKKTGRLVIVHEAPKTGGIGAEIAALIAE 277

Length = 324

>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated

 Score =  175 bits (446), Expect = 4e-55
 Identities = 77/153 (50%), Positives = 103/153 (67%), Gaps = 19/153 (12%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
           VV+PY + D KGLLK AIRDP+PV+FLENE+LYG  + + +E  S    +PIGKA + ++
Sbjct: 145 VVAPYFAADCKGLLKTAIRDPNPVIFLENEILYGHSHEVPEEEES----IPIGKAAILRE 200

Query: 61  GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
           G                D+TIV  S  V+ AL+AA++L  +GI  EVI+LR+LRPLD ET
Sbjct: 201 G---------------SDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRPLDTET 245

Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           I +SV KTN L+ VE GWP  G+G+EI+A IM+
Sbjct: 246 IIESVKKTNRLVVVEEGWPFAGVGAEIAALIMK 278

Length = 327

>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated

 Score =  114 bits (286), Expect = 2e-31
 Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 22/151 (14%)

Query: 3   SPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGE 62
           +PYN   AKGLLK+AIR  +PV+F E+ LLY ++    +E    +++LP+ KA+V + G 
Sbjct: 150 TPYN---AKGLLKSAIRSNNPVIFFEHVLLYNLK----EEIPDNEYLLPLEKAEVVRPG- 201

Query: 63  AFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETIT 122
                          DITI+ +S+     L A K+L  +G D E+I+L SL+PLD+ TI+
Sbjct: 202 --------------NDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTIS 247

Query: 123 KSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           KSV KT+ ++ VE      GIG+E+ A+I E
Sbjct: 248 KSVKKTHKVLIVEECMKTGGIGAELIAQINE 278

Length = 327

>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain

 Score =  105 bits (264), Expect = 4e-30
 Identities = 39/83 (46%), Positives = 55/83 (66%)

Query: 71  VIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNY 130
            I   G D+TIV +   V  AL+AA+ LA +GI AEVI+LR+++PLD +TI +SV KT  
Sbjct: 4   EILREGDDVTIVAYGSMVHEALEAAEELAKEGISAEVIDLRTVKPLDEDTILESVKKTGR 63

Query: 131 LISVEGGWPQCGIGSEISARIME 153
           L+ VE    + G GSE++A + E
Sbjct: 64  LVVVEEAVKRGGFGSEVAAALAE 86

The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site. Length = 124

>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins

 Score = 64.8 bits (159), Expect = 6e-14
 Identities = 21/30 (70%), Positives = 25/30 (83%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENE 30
           VV+P    DAKGLLKAAIRD DPV+FLE++
Sbjct: 138 VVAPSTPYDAKGLLKAAIRDDDPVIFLEHK 167

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. E1-PDHc is an alpha2beta2 dimer-of-heterodimers having two active sites lying between PYR and PP domains of separate subunits, the PYR domains are arranged on the beta subunit, the PP domains on the alpha subunits. PDHc catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate during the breakdown of branched chain amino acids. Length = 167

>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 15/107 (14%)

Query: 47  DFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAE 106
            +   IGKA V + G                D+TI+     V  AL+AA+IL  +GI A 
Sbjct: 178 GYTFEIGKANVLRDGS---------------DLTIIATGVMVAEALEAAEILKKEGISAA 222

Query: 107 VINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           VIN+ +++P+D + I K+  +T  +++ E      G+GS ++  + E
Sbjct: 223 VINMFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSE 269

Length = 312

>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 19/123 (15%)

Query: 35  VQYP----MGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVET 90
           ++YP    +G     +   L IGK ++ K+GE                + I+     +  
Sbjct: 471 IRYPRGNGVGVILTPELEPLEIGKGELLKEGE---------------KVAILAFGTMLPE 515

Query: 91  ALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISAR 150
           AL  A+ L   GI   V++ R ++PLD   + +     + ++++E      G GS +   
Sbjct: 516 ALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEF 575

Query: 151 IME 153
           +  
Sbjct: 576 LAA 578

Length = 627

>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 22/122 (18%)

Query: 35  VQYPMG---DEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETA 91
           ++YP G      L +   LPIGK +V ++G               +D+ I+     +  A
Sbjct: 434 IRYPRGNGVGVELPELEPLPIGKGEVLREG---------------EDVAILAFGTMLAEA 478

Query: 92  LDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARI 151
           L AA+ LA     A V++ R ++PLD E + +   K + +++VE G    G GS +   +
Sbjct: 479 LKAAERLA----SATVVDARFVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFL 534

Query: 152 ME 153
            +
Sbjct: 535 AD 536

Length = 580

>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 19/123 (15%)

Query: 35  VQYPMGDEALSK-DFV---LPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVET 90
           V+YP G+    +       LPIGK++V ++GE                I I+G    V  
Sbjct: 465 VRYPRGNAVGVELTPEPEKLPIGKSEVLRKGE---------------KILILGFGTLVPE 509

Query: 91  ALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISAR 150
           AL+ A+ L  +GI+A V++ R ++PLD E I +       L++VE      G GS +   
Sbjct: 510 ALEVAESLNEKGIEATVVDARFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEF 569

Query: 151 IME 153
           +M+
Sbjct: 570 LMD 572

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 617

>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQ 36
           VV P ++ + KGLL+AAI D  PVV      L   +
Sbjct: 137 VVRPSDAAETKGLLRAAIEDDGPVVLRLPRQLLRHK 172

This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. Length = 172

>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 44.3 bits (104), Expect = 7e-06
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 19/104 (18%)

Query: 34  GVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALD 93
           GV  P G++ +     L IG+ ++ + GE                + ++G+  AV+  L+
Sbjct: 521 GVSLPPGNKGVP----LQIGRGRILRDGER---------------VALLGYGSAVQRCLE 561

Query: 94  AAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGG 137
           AA +L+ +G+   V + R  +PLD+  I         LI+VE G
Sbjct: 562 AASMLSERGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEG 605

Length = 641

>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain

 Score = 42.5 bits (101), Expect = 9e-06
 Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDP-VVFLENELLYG 34
           VV+P +  +AKGLL+AAIRD  P V+ LE + LY 
Sbjct: 102 VVAPSDPAEAKGLLRAAIRDDGPVVIRLERKSLYR 136

Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. Length = 136

>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 72  IRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYL 131
           + V G+D+ ++G+   V+  L A  +L+  G++  V + R  +PLDI+ +        +L
Sbjct: 563 VLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKFL 622

Query: 132 ISVEGGWPQC--GIGSEISARI 151
           I+VE G   C  G GS ++  I
Sbjct: 623 ITVEEG---CVGGFGSHVAQFI 641

Length = 701

>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 19/104 (18%)

Query: 34  GVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALD 93
           GVQ P  +    K   + +GK ++  +GE                + ++G+  AV++ L 
Sbjct: 520 GVQLPPNN----KGIPIEVGKGRILLEGE---------------RVALLGYGTAVQSCLA 560

Query: 94  AAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGG 137
           AA +L   G+ A V + R  +PLD   I         LI+VE G
Sbjct: 561 AASLLERHGLSATVADARFCKPLDRALIRSLAKSHEVLITVEEG 604

Length = 677

>gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 62  EAFYHLDAPVIRVTGKDITIVGHSKAVETA--LDAAKILAG 100
           EAF +LDAP++RV G D T V +S A+E A   +  +I+A 
Sbjct: 278 EAFDYLDAPILRVAGPD-TPVPYSAALEKAYLPNPERIVAA 317

Length = 324

>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 75  TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISV 134
            G D+ I+     +   LDAA +L  +GI   V + R ++PLD       V     +I  
Sbjct: 503 EGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVRHHIVVIVE 562

Query: 135 EGGWPQCGIGSEIS 148
           E G    G G+ + 
Sbjct: 563 EQG-AMGGFGAHVL 575

Length = 641

>gnl|CDD|181999 PRK09622, porA, pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 78  DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSV 125
           ++ IV      E+A+ AAK +  +GI A V  +R LRP   E + +++
Sbjct: 269 EVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQAL 316

Length = 407

>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 78  DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETIT--KSVMKTNYL--IS 133
           D+ ++     V  AL+AA  L  +GI   V+++ S    D +     +SV+       ++
Sbjct: 474 DVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVA 533

Query: 134 VEGGWPQ 140
           VE G   
Sbjct: 534 VEAGVAD 540

Length = 586

>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 76  GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDI--ETITKSVMKTN-YLI 132
           G DI ++     V  A++AAK LA + I   V+++ S    D   E   +SV+  N   +
Sbjct: 540 GPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTRL 599

Query: 133 SVEGG 137
           +VE G
Sbjct: 600 AVEAG 604

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous [Energy metabolism, Pentose phosphate pathway]. Length = 653

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 13/18 (72%), Positives = 17/18 (94%)

Query: 62  EAFYHLDAPVIRVTGKDI 79
           +AF +LDAPV+RVTGKD+
Sbjct: 418 QAFDYLDAPVLRVTGKDV 435

Length = 464

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
COG3958	312	Transketolase, C-terminal subunit [Carbohydrate tr	99.97
PLN02683	356	pyruvate dehydrogenase E1 component subunit beta	99.97
CHL00144	327	odpB pyruvate dehydrogenase E1 component beta subu	99.97
PRK09212	327	pyruvate dehydrogenase subunit beta; Validated	99.97
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.96
PTZ00182	355	3-methyl-2-oxobutanate dehydrogenase; Provisional	99.96
COG0022	324	AcoB Pyruvate/2-oxoglutarate dehydrogenase complex	99.96
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	99.95
COG1154	627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	99.95
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	99.95
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	99.94
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.93
PLN02582	677	1-deoxy-D-xylulose-5-phosphate synthase	99.93
PRK12571	641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.92
KOG0524|consensus	359		99.92
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.92
PF02780	124	Transketolase_C: Transketolase, C-terminal domain;	99.88
PLN02790	654	transketolase	99.8
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	99.8
KOG0525|consensus	362		99.79
PRK05899	624	transketolase; Reviewed	99.76
KOG0523|consensus	632		99.74
TIGR03186	889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	99.74
PTZ00089	661	transketolase; Provisional	99.72
PRK07119	352	2-ketoisovalerate ferredoxin reductase; Validated	99.72
PRK12753	663	transketolase; Reviewed	99.7
PRK08659	376	2-oxoglutarate ferredoxin oxidoreductase subunit a	99.67
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	99.66
PRK09627	375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	99.66
PRK09405	891	aceE pyruvate dehydrogenase subunit E1; Reviewed	99.64
PRK12754	663	transketolase; Reviewed	99.61
PRK09622	407	porA pyruvate flavodoxin oxidoreductase subunit al	99.55
TIGR03710	562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	99.55
PRK13012	896	2-oxoacid dehydrogenase subunit E1; Provisional	99.52
PRK09404	924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	99.47
PRK08366	390	vorA 2-ketoisovalerate ferredoxin oxidoreductase s	99.41
COG4231	640	Indolepyruvate ferredoxin oxidoreductase, alpha an	99.4
PRK08367	394	porA pyruvate ferredoxin oxidoreductase subunit al	99.37
TIGR00239	929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	99.33
COG0021	663	TktA Transketolase [Carbohydrate transport and met	99.17
PRK13030	1159	2-oxoacid ferredoxin oxidoreductase; Provisional	99.05
PRK09193	1165	indolepyruvate ferredoxin oxidoreductase; Validate	99.02
PRK13029	1186	2-oxoacid ferredoxin oxidoreductase; Provisional	98.97
TIGR02176	1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	98.91
COG0674	365	PorA Pyruvate:ferredoxin oxidoreductase and relate	98.6
PRK05261	785	putative phosphoketolase; Provisional	98.24
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	96.66
TIGR00759	885	aceE pyruvate dehydrogenase E1 component, homodime	95.93
KOG0450|consensus	1017		94.72
KOG0451|consensus	913		92.39
PF09363	203	XFP_C: XFP C-terminal domain; InterPro: IPR018969	91.92
COG0567	906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	90.62
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	90.5
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	89.6
cd01481	165	vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V	89.35
COG2609	887	AceE Pyruvate dehydrogenase complex, dehydrogenase	89.08
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	88.62
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	87.37
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	87.11
COG3957	793	Phosphoketolase [Carbohydrate transport and metabo	86.83
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	85.42
PF03358	152	FMN_red: NADPH-dependent FMN reductase; InterPro:	85.3
COG0680	160	HyaD Ni,Fe-hydrogenase maturation factor [Energy p	84.43
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	84.32
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	83.92
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	83.78
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	83.59
PF01855	230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	83.5
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	83.37
PRK10853	118	putative reductase; Provisional	81.46
cd06062	146	H2MP_MemB-H2up Endopeptidases belonging to membran	80.84
COG1393	117	ArsC Arsenate reductase and related proteins, glut	80.76
cd03412	127	CbiK_N Anaerobic cobalamin biosynthetic cobalt che	80.72
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	80.71
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	80.08

>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.4e-31  Score=206.04  Aligned_cols=135  Identities=28%  Similarity=0.432  Sum_probs=123.1

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|+.+.+++++++.++++|+|+|+.+.    ++|+.  .....+.|++||+.+|++               |+|++
T Consensus       138 V~~P~D~v~~~~i~~~~~~~~GP~Y~Rl~R~----~~p~~--~~~~~~~F~iGka~vLrd---------------G~D~t  196 (312)
T COG3958         138 VIAPADAVETRAILDQIADYKGPVYMRLGRG----KVPVV--VDEGGYTFEIGKANVLRD---------------GSDLT  196 (312)
T ss_pred             EEccCcHHHHHHHHHHHHhcCCCEEEEecCC----CCCce--ecCCCceEeccceeEeec---------------CCceE
Confidence            6899999999999999999999999997543    23321  122357899999999999               99999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      ||++|.|+..+++|++.|+++||++.|||+.+|||+|++.+.+++++++.|+|+|||+..||+|+.+++.|++++.
T Consensus       197 iiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~p  272 (312)
T COG3958         197 IIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENGP  272 (312)
T ss_pred             EEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986

>PLN02683 pyruvate dehydrogenase E1 component subunit beta

Probab=99.97  E-value=5.3e-31  Score=214.48  Aligned_cols=140  Identities=66%  Similarity=1.037  Sum_probs=125.9

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|+.|++.|+++|+++++|+|||+++..++.+++.........+.+++|+++++++               |.|++
T Consensus       168 V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~---------------G~dvt  232 (356)
T PLN02683        168 VLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIERE---------------GKDVT  232 (356)
T ss_pred             EEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEc---------------CCCEE
Confidence            589999999999999999989999999887777766554322112235677899999998               99999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ||++|+++..|++|++.|+++||+++|||+++++|||++.|.++++++++|+|+|||...||||++|++++++++
T Consensus       233 Iia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~  307 (356)
T PLN02683        233 IVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEES  307 (356)
T ss_pred             EEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated

Probab=99.97  E-value=7.3e-31  Score=211.69  Aligned_cols=136  Identities=43%  Similarity=0.640  Sum_probs=124.4

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|+.|++.++++|++.++|+|||+++.+|+.+.+    +..+.+.+++|++.++++               |.|++
T Consensus       145 V~~Psd~~d~~~~l~~a~~~~~Pv~ire~~~l~~~~~~----v~~~~~~~~~Gk~~v~~~---------------G~dit  205 (327)
T CHL00144        145 IVACSTPYNAKGLLKSAIRSNNPVIFFEHVLLYNLKEE----IPDNEYLLPLEKAEVVRP---------------GNDIT  205 (327)
T ss_pred             EEEeCCHHHHHHHHHHHHhCCCcEEEEEcHHhcCCCCC----CCCCCccccCCeeEEEEc---------------CCCEE
Confidence            58999999999999999999999999998888864321    222345678999999999               99999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ||+||+|+..|++|++.|+++|++++|||+++|+|||++.|.++++++++|+|+|||+..||+|++|++.+++++
T Consensus       206 iia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~  280 (327)
T CHL00144        206 ILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHL  280 (327)
T ss_pred             EEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986

>PRK09212 pyruvate dehydrogenase subunit beta; Validated

Probab=99.97  E-value=2.5e-29  Score=202.84  Aligned_cols=136  Identities=56%  Similarity=0.884  Sum_probs=122.4

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|+.|++.|+++|++.++|+|||+++.+|....    ....+.+.+++|+++++++               |.|++
T Consensus       145 V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~~~~~~~----~~~~~~~~~~~Gk~~vl~~---------------G~di~  205 (327)
T PRK09212        145 VVAPYFAADCKGLLKTAIRDPNPVIFLENEILYGHSH----EVPEEEESIPIGKAAILRE---------------GSDVT  205 (327)
T ss_pred             EEeeCCHHHHHHHHHHHHhCCCcEEEEEchhhcCCCC----CCCCCCccccCCeeEEEEe---------------CCCEE
Confidence            6899999999999999999899999998776665321    1222235678999999999               99999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ||+||+++..+++|++.|+++|++++|+++++++|||++.|.++++++++|+|+|||+..||+|+++++++.+++
T Consensus       206 iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~  280 (327)
T PRK09212        206 IVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEA  280 (327)
T ss_pred             EEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999875

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.96  E-value=3.2e-29  Score=209.63  Aligned_cols=137  Identities=61%  Similarity=1.011  Sum_probs=124.3

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|+.|++.++++++++++|+||++++.+|+++.+.. ..  ..+.+++|+++++++               |.|++
T Consensus       283 V~~P~d~~d~~~ll~~ai~~~~Pv~ile~~~ry~~~~~vp-~~--~~~~~~~Gka~v~r~---------------G~Dvt  344 (464)
T PRK11892        283 VVAPYSAADAKGLLKAAIRDPNPVIFLENEILYGQSFDVP-KL--DDFVLPIGKARIHRE---------------GKDVT  344 (464)
T ss_pred             EEEeCCHHHHHHHHHHHhhCCCcEEEEechhhcCCCCCCC-Cc--CCccccCceEEEEEc---------------CCCEE
Confidence            6899999999999999999999999999887787642211 11  235678999999999               99999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ||++|+++..|++|++.|+++||+++|||+++|+|||.+.|.++++++++|+|+|||+..||||++|++++++++
T Consensus       345 Iva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~  419 (464)
T PRK11892        345 IVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQA  419 (464)
T ss_pred             EEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986

>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional

Probab=99.96  E-value=3.1e-29  Score=204.06  Aligned_cols=137  Identities=58%  Similarity=0.830  Sum_probs=123.5

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|+.|++.|+++|+++++|+|||+|+++++...+.   .....+.+++|+++++++               |.|++
T Consensus       176 V~~Psd~~e~~~~l~~a~~~~~P~~i~~p~~l~r~~~~~---~~~~~~~~~~Gk~~vl~~---------------G~di~  237 (355)
T PTZ00182        176 VVAPSDPEDAKGLLKAAIRDPNPVVFFEPKLLYRESVEV---VPEADYTLPLGKAKVVRE---------------GKDVT  237 (355)
T ss_pred             EEeeCCHHHHHHHHHHHHhCCCcEEEEeehHHhCCCCCC---CCcccccccCCcceEecC---------------CCCEE
Confidence            689999999999999999989999999998877543221   112235677899999998               99999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ||+||+++..+++|++.|+++|++++||++++++|||++.|.+.++++++|+|+|||+..||||+.|++++++++
T Consensus       238 Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~  312 (355)
T PTZ00182        238 IVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDC  312 (355)
T ss_pred             EEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986

>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]

Probab=99.96  E-value=1.1e-28  Score=193.09  Aligned_cols=136  Identities=52%  Similarity=0.732  Sum_probs=126.6

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccc-cccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYG-VQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |+.||++.|++.+|+.|++++.||+|.++|++|+ .+.++    ....|.+++||+.+.|+               |+|+
T Consensus       143 VV~PStpyDAKGLL~aAIrd~dPViflE~k~lY~~~~~eV----P~~~Y~iPlGkA~i~re---------------G~Dv  203 (324)
T COG0022         143 VVMPSTPYDAKGLLKAAIRDPDPVIFLEHKRLYRSFKGEV----PEEDYTIPLGKAKIVRE---------------GSDV  203 (324)
T ss_pred             EEecCChHHHHHHHHHHhcCCCCEEEEecHHHhcccccCC----CCCCccccccceeeEec---------------CCce
Confidence            5789999999999999999999999999999998 44443    23567899999999999               9999


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      +|||||.|++.+++|+++|.++|+++.|||+|+|+|+|.++|.++++|+.++++|+|..+.+|+|++|++.++|+.
T Consensus       204 Tivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~  279 (324)
T COG0022         204 TIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEA  279 (324)
T ss_pred             EEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988863

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.95  E-value=1.4e-27  Score=206.24  Aligned_cols=136  Identities=23%  Similarity=0.364  Sum_probs=118.5

Q ss_pred             CcccCCHHHHHHHHHHHHh-CCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIR-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|+.|++.|+++|+. .++|+|||+++..+... +   ...+..+.+++||++++++               |.|+
T Consensus       510 V~aPsD~~El~~mL~~A~~~~~gPv~IR~pRg~~~~~-~---~~~~~~~~~~iGK~~vlre---------------G~dv  570 (701)
T PLN02225        510 AMAPADEDELVNMVATAAYVTDRPVCFRFPRGSIVNM-N---YLVPTGLPIEIGRGRVLVE---------------GQDV  570 (701)
T ss_pred             EEeeCCHHHHHHHHHHHHhcCCCCEEEEecccccCCC-C---cCCCCCccccCcceEEEEe---------------CCCE
Confidence            6899999999999999985 57999999876533211 0   0001124678899999999               9999


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      +||++|+|+..|++|++.|+++|++++|||++|+||||++.|.+++++++.|+|+|||.. ||||++|+++++++++
T Consensus       571 tIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~  646 (701)
T PLN02225        571 ALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQ  646 (701)
T ss_pred             EEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999999999996 9999999999999864

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

Probab=99.95  E-value=2.5e-27  Score=199.20  Aligned_cols=136  Identities=21%  Similarity=0.318  Sum_probs=119.9

Q ss_pred             CcccCCHHHHHHHHHHHHhCC-CcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDP-DPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~-~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|.+|++.||++|+.++ +|++||+|+..     ..+.........+++|+|+++++               |.|+
T Consensus       445 i~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~-----~~~~~~~~~~~~~~~Gk~~i~~~---------------G~~v  504 (627)
T COG1154         445 IMAPRDEEELRQMLYTALAQDDGPVAIRYPRGN-----GVGVILTPELEPLEIGKGELLKE---------------GEKV  504 (627)
T ss_pred             EecCCCHHHHHHHHHHHHhcCCCCeEEEecCCC-----CCCCCcccccccccccceEEEec---------------CCcE
Confidence            589999999999999999976 89999965431     11111111134578999999999               9999


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      +||++|.++..|++|++.|.+.|++++|||+||+||+|++.|.++++.++.++|+||+...||+|+.|+++|+++++
T Consensus       505 ail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~  581 (627)
T COG1154         505 AILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI  581 (627)
T ss_pred             EEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999985

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.95  E-value=1.2e-26  Score=200.55  Aligned_cols=136  Identities=26%  Similarity=0.345  Sum_probs=120.4

Q ss_pred             CcccCCHHHHHHHHHHHHhCC-CcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDP-DPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~-~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|+.|++.|+++|++.+ +|+|||+++..+....     .....+.+++|+++++++               |.|+
T Consensus       439 V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~-----~~~~~~~~~~Gk~~vlr~---------------G~dv  498 (617)
T TIGR00204       439 IMAPSDENELRQMLYTGYHYDDGPIAVRYPRGNAVGVE-----LTPEPEKLPIGKSEVLRK---------------GEKI  498 (617)
T ss_pred             EEeeCCHHHHHHHHHHHHhCCCCCEEEEEccCCcCCcc-----cCCccccccCCceEEEEc---------------CCCE
Confidence            589999999999999999865 9999998765442110     011235678899999998               9999


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      +||++|+|+..|++|++.|+++|++++|||+++++|||++.+.++++++++|+|+|||+..||||++|++++.++++
T Consensus       499 tIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~~  575 (617)
T TIGR00204       499 LILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQNK  575 (617)
T ss_pred             EEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999863

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.94  E-value=6.8e-26  Score=195.18  Aligned_cols=136  Identities=24%  Similarity=0.337  Sum_probs=118.2

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccc-cCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCc
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQ-YPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKD   78 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~   78 (158)
                      |++|+|+.|++.|+++|+.. ++|+|||++|..+... .+.    ......+++|+++++++               |.|
T Consensus       486 V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~~~~----~~~~~~~~iGk~~vlre---------------G~d  546 (641)
T PLN02234        486 VMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPP----GNKGVPLQIGRGRILRD---------------GER  546 (641)
T ss_pred             EEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccccCC----CCccccccCceEEEEEe---------------CCC
Confidence            68999999999999998864 6999999887654211 110    01123567899999999               999


Q ss_pred             EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291          79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus        79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      ++||++|+++..|++|++.|+++|++++|||+++++|||.+.+..++++++.|||+|||.. ||||++|+++|+++++
T Consensus       547 vtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~~~vVt~Ee~~~-GG~Gs~Va~~l~e~~~  623 (641)
T PLN02234        547 VALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGL  623 (641)
T ss_pred             EEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhCCEEEEECCCCC-CcHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999989999999999997 9999999999999986

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.93  E-value=2.3e-25  Score=191.49  Aligned_cols=133  Identities=24%  Similarity=0.264  Sum_probs=116.0

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|+.|++.|+++|++. ++|+|||++|..+.....       ....+..+++.++++               |.|+
T Consensus       406 V~~P~d~~e~~~~l~~a~~~~~gP~~ir~~r~~~~~~~~-------~~~~~~~~k~~v~~~---------------g~dv  463 (581)
T PRK12315        406 YLAPTTKEELIAMLEWALTQHEHPVAIRVPEHGVESGPT-------VDTDYSTLKYEVTKA---------------GEKV  463 (581)
T ss_pred             EEecCCHHHHHHHHHHHHhCCCCcEEEEEcCCccCCCCC-------CccCcccceEEEEec---------------CCCE
Confidence            68999999999999999986 799999987665432110       111234568888988               8999


Q ss_pred             EEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          80 TIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      +||++|+++..|++|++.|+++ |++++|||+++++|||++.+..+.++++.|+|+|||+..||||++|++++.+.+
T Consensus       464 tiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~  540 (581)
T PRK12315        464 AILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNSD  540 (581)
T ss_pred             EEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC
Confidence            9999999999999999999999 999999999999999999998888888999999999999999999999998864

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.93  E-value=3.5e-25  Score=192.09  Aligned_cols=136  Identities=24%  Similarity=0.306  Sum_probs=116.2

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|+.|++.|+++|++. ++|+|||+++.... ......  ....+.+++|+++++++               |.|+
T Consensus       485 V~~Psd~~E~~~~l~~al~~~~gPv~IR~pr~~~~-~~~~~~--~~~~~~~~iGk~~vlr~---------------G~dv  546 (677)
T PLN02582        485 VMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGI-GVQLPP--NNKGIPIEVGKGRILLE---------------GERV  546 (677)
T ss_pred             EEeeCCHHHHHHHHHHHHhCCCCCEEEEEecCCCC-CcccCC--cccccccccCceEEEEe---------------CCCE
Confidence            68999999999999999975 59999998754211 000000  00123567899999999               8999


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      +||++|+|+..|++|++.|+++|++++|||++|++|||++.+..++++++.|||+|||.. ||||+.|++++.+++
T Consensus       547 tIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~  621 (677)
T PLN02582        547 ALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDRALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDG  621 (677)
T ss_pred             EEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999988999999999997 999999999999986

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.92  E-value=1.8e-24  Score=187.58  Aligned_cols=135  Identities=22%  Similarity=0.328  Sum_probs=115.7

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|+.|++.|+++|+++ ++|+|||++|..+... .    .....+.+++||+.++++               |.|+
T Consensus       448 V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~-~----~~~~~~~~~~gk~~vlr~---------------G~di  507 (641)
T PRK12571        448 VMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGEGVGV-E----IPAEGTILGIGKGRVPRE---------------GPDV  507 (641)
T ss_pred             EEeeCCHHHHHHHHHHHHhCCCCcEEEEEecCcCCcc-c----cCCCCccccCceeEEEec---------------CCCE
Confidence            68999999999999999985 8999999876543210 0    111123467899999998               9999


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      +||++|+++..|++|++.|+++|++++|||+++|+|||++.+..+++++ +++|+||+...||||++|++++.++++
T Consensus       508 tIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i~sv~k~~-~vvvveE~~~~gG~g~~v~~~l~~~~~  583 (641)
T PRK12571        508 AILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVRHH-IVVIVEEQGAMGGFGAHVLHHLADTGL  583 (641)
T ss_pred             EEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHHHHHhhhC-CEEEEECCCCCCCHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999987777655 799999999999999999999998864

>KOG0524|consensus

Probab=99.92  E-value=2e-24  Score=166.63  Aligned_cols=139  Identities=66%  Similarity=1.028  Sum_probs=131.4

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|.++.+++.+|+.|+++++||++.++..+|+..++..++..++++..++||+++.++               |.+++
T Consensus       176 vvapysaedakGLlKaAIRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~---------------G~~iT  240 (359)
T KOG0524|consen  176 VVAPYSAEDAKGLLKAAIRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIERE---------------GTHIT  240 (359)
T ss_pred             EeccCChhhhhhHHHHhccCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeec---------------CCceE
Confidence            579999999999999999999999999999999988887665556678899999999999               99999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEI  154 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~  154 (158)
                      ||++..++..++||++.|.++|+++.||++|+|+|||.++|...++++.++++||++.+.+|+|++|++.++|+
T Consensus       241 ivt~Sr~v~~~leAA~~L~~~Gvs~EVInlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~  314 (359)
T KOG0524|consen  241 IVTYSRMVGHCLEAAETLVAKGVSAEVINLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMEN  314 (359)
T ss_pred             EEEechhHHHHHHHHHHHHhcCCCceeEeeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999885

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.92  E-value=4.8e-24  Score=183.50  Aligned_cols=131  Identities=26%  Similarity=0.364  Sum_probs=115.4

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|+.|++.++++|++. ++|+|||++|..+... +     .+..+.+++|+++++++               |.|+
T Consensus       408 V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~-~-----~~~~~~~~~Gk~~vl~~---------------G~dv  466 (580)
T PRK05444        408 IMAPSDENELRQMLYTALAYDDGPIAIRYPRGNGVGV-E-----LPELEPLPIGKGEVLRE---------------GEDV  466 (580)
T ss_pred             EEeeCCHHHHHHHHHHHHhCCCCcEEEEecCCCCCCC-C-----CCCcccccCCceEEEEc---------------CCCE
Confidence            68999999999999999976 8999999876654211 0     01134578899999998               8999


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      +||++|+++..|++|++.|+    +++||++++++|||++.+.++++++++++|+|||+..||||+.+++++.++++
T Consensus       467 tIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~  539 (580)
T PRK05444        467 AILAFGTMLAEALKAAERLA----SATVVDARFVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL  539 (580)
T ss_pred             EEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCHHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC
Confidence            99999999999999999985    79999999999999999999999999999999999999999999999998763

>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2

Probab=99.88  E-value=1.6e-23  Score=147.26  Aligned_cols=90  Identities=40%  Similarity=0.614  Sum_probs=85.5

Q ss_pred             CceEEEeeccccccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEE
Q psy7291          53 GKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLI  132 (158)
Q Consensus        53 g~~~vl~~~~~~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vv  132 (158)
                      |++.++++               |.|++|||||+++..|++|++.|+++|++++|+++++++|||++.|.++++++++++
T Consensus         1 Gk~~~~~~---------------g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vv   65 (124)
T PF02780_consen    1 GKAEVLRE---------------GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVV   65 (124)
T ss_dssp             TEEEEEES---------------SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHH
T ss_pred             CEEEEEeC---------------CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhcccc
Confidence            67888888               999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCcCCCChHHHHHHHHHcCCCC
Q psy7291         133 SVEGGWPQCGIGSEISARIMEIPYS  157 (158)
Q Consensus       133 vvEe~~~~GG~g~~i~~~l~~~~~~  157 (158)
                      |+|||+..||+|+.+++++.+++++
T Consensus        66 vvee~~~~gg~g~~i~~~l~~~~~~   90 (124)
T PF02780_consen   66 VVEEHYKIGGLGSAIAEYLAENGFN   90 (124)
T ss_dssp             HSETCESEEEEHSSHHHHHHHHTTT
T ss_pred             ccccccccccHHHHHHHHHHHhCCc
Confidence            9999999999999999999997653

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....

>PLN02790 transketolase

Probab=99.80  E-value=7e-19  Score=153.28  Aligned_cols=126  Identities=18%  Similarity=0.214  Sum_probs=98.7

Q ss_pred             CcccCCHHHHHHHHHHHHh-CCCcEEEEecccccccccCCCCcccC-CCcccccCceEEEeeccccccCCCcccccCCCc
Q psy7291           1 VVSPYNSEDAKGLLKAAIR-DPDPVVFLENELLYGVQYPMGDEALS-KDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKD   78 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~-~~~P~~iR~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~   78 (158)
                      |++|+|+.|+..|++++++ .++|+|||+++...+.       +.. ....+..|+ .++++...          ..+.|
T Consensus       481 V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~-------~~~~~~~~~~~G~-~vl~~~~~----------~~~~d  542 (654)
T PLN02790        481 MLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPN-------LPGTSIEGVEKGG-YVISDNSS----------GNKPD  542 (654)
T ss_pred             EEeCCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCC-------CCCCcccccccCc-EEEEeCCC----------CCCCC
Confidence            6899999999999999997 5799999987543211       111 123466786 56665100          00279


Q ss_pred             EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHH---HHH-hCCCeEEEEeCCcCCCChHH
Q psy7291          79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETIT---KSV-MKTNYLISVEGGWPQCGIGS  145 (158)
Q Consensus        79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~---~~~-~~~~~vvvvEe~~~~GG~g~  145 (158)
                      ++||++|+++..|++|++.|+++|++++||++++++|||++...   +++ ++++.+|++|+|.. +|+++
T Consensus       543 v~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~-~G~~~  612 (654)
T PLN02790        543 LILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGST-FGWEK  612 (654)
T ss_pred             EEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccc-hhHHH
Confidence            99999999999999999999999999999999999999998744   566 66778999999995 78765

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=99.80  E-value=4.7e-19  Score=154.33  Aligned_cols=123  Identities=21%  Similarity=0.213  Sum_probs=98.5

Q ss_pred             CcccCCHHHHHHHHHHHH-hCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAI-RDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~-~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|+.|+..++++|+ +.++|+|||++|...+..+.      .....+..|+ +++++.             +|.|+
T Consensus       484 v~~PaD~~E~~~~~~~a~~~~~gP~~irl~r~~~~~~~~------~~~~~~~~G~-~vl~~~-------------~g~dv  543 (653)
T TIGR00232       484 VWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQLEE------SSLEKVLKGG-YVLKDS-------------KGPDI  543 (653)
T ss_pred             EEeeCCHHHHHHHHHHHHhcCCCcEEEEEcCCccCCCCc------ccccccCCCc-EEEEec-------------CCCCE
Confidence            689999999999999999 56899999987654322110      0112355665 566421             18899


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH---HHHHHhCCCeEEEEeCCcCCCChH
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET---ITKSVMKTNYLISVEGGWPQCGIG  144 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~---l~~~~~~~~~vvvvEe~~~~GG~g  144 (158)
                      +||++|+++..|++|++.|+++|++++||++++++|||++.   +..+++++..+||+|||+. +|+.
T Consensus       544 ~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~-~g~~  610 (653)
T TIGR00232       544 ILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAA-DEWY  610 (653)
T ss_pred             EEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCceEEEecccH-hHHH
Confidence            99999999999999999999999999999999999997765   7888888889999999986 5553

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>KOG0525|consensus

Probab=99.79  E-value=2e-19  Score=137.55  Aligned_cols=136  Identities=35%  Similarity=0.589  Sum_probs=120.8

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |+.|+.+.|++.+|-.++++++|+++.+||.+|+...+   ++...++.++.+.++++++               |+|++
T Consensus       182 vviprsp~qakglllscirdpnp~iffepk~lyr~a~e---dvp~~dy~iplsqaevire---------------g~dit  243 (362)
T KOG0525|consen  182 VVIPRSPRQAKGLLLSCIRDPNPCIFFEPKILYRQAVE---DVPEGDYMIPLSQAEVIRE---------------GSDIT  243 (362)
T ss_pred             EEecCCcchhhceeeeeccCCCceEEechHHHHHHhhh---hCCCCCccccccHHHHhhc---------------CCceE
Confidence            46799999999999999999999999999999976432   2334577889999999999               99999


Q ss_pred             EEEechhHHHHHHHHHHHH-hCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcC
Q psy7291          81 IVGHSKAVETALDAAKILA-GQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEI  154 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~-~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~  154 (158)
                      +++||..++.++|++..-+ +.|+++.+||+++|-|+|++.+.++++++.++++-.|....||||++|++.+.++
T Consensus       244 lv~wgtqvh~i~e~a~l~~ek~giscevidlkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~er  318 (362)
T KOG0525|consen  244 LVAWGTQVHVIMEQACLAKEKLGISCEVIDLKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQER  318 (362)
T ss_pred             EEEcchhhHHHHHHHHhhHHhcCCceEEEeeecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHH
Confidence            9999999999999876443 4599999999999999999999999999999999999999999999999988775

>PRK05899 transketolase; Reviewed

Probab=99.76  E-value=1.2e-18  Score=151.28  Aligned_cols=121  Identities=20%  Similarity=0.282  Sum_probs=96.0

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|+.|++.+++++++. ++|+|||+++...+..+    .. .....+..|+ +++++               |.|+
T Consensus       455 V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~----~~-~~~~~~~~G~-~~l~~---------------G~dv  513 (624)
T PRK05899        455 VIRPADANETAAAWKYALERKDGPSALVLTRQNLPVLE----RT-AQEEGVAKGG-YVLRD---------------DPDV  513 (624)
T ss_pred             EEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCcC----Cc-cccccccCCc-EEEec---------------CCCE
Confidence            58999999999999999987 89999998643221100    00 0123466776 77888               8999


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH---HHHHH-hCCCeEEEEeCCcCCCCh
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET---ITKSV-MKTNYLISVEGGWPQCGI  143 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~---l~~~~-~~~~~vvvvEe~~~~GG~  143 (158)
                      +||++|+++..|++|++.|+++|++++||++++++|||++.   +...+ +.+..++++|++.. +||
T Consensus       514 tiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~-~g~  580 (624)
T PRK05899        514 ILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVA-DGW  580 (624)
T ss_pred             EEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCc-cch
Confidence            99999999999999999999999999999999999999983   44555 44567888888775 555

>KOG0523|consensus

Probab=99.74  E-value=1.8e-17  Score=139.47  Aligned_cols=129  Identities=22%  Similarity=0.362  Sum_probs=104.6

Q ss_pred             CcccCCHHHHHHHHHHHHhCCC-cEEEEecccccccccCCCCcccCCCcccccCceE-EEeeccccccCCCcccccCCCc
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPD-PVVFLENELLYGVQYPMGDEALSKDFVLPIGKAK-VEKQGEAFYHLDAPVIRVTGKD   78 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~-P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-vl~~~~~~~~~~~~~~~~~g~~   78 (158)
                      ||.|+|..|+..|+..|.+.++ |.++++++.    ..+    .......+.+|+++ ++++.              ..|
T Consensus       450 v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~----~~~----~~~~~~~~~igkg~~vl~~~--------------~~d  507 (632)
T KOG0523|consen  450 VFRPADGNETENAVATAANTKGTPSIRTLSRQ----NLP----IYNNTEIEEIGKGKYVLQEV--------------EPD  507 (632)
T ss_pred             EEecCchHHHHHHHHHHHhcCCCeeEEEecCc----ccc----ccCCCchhhhccccEEEecC--------------CCC
Confidence            6899999999999999998765 888875322    111    12233457888888 45551              249


Q ss_pred             EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC-eEEEEeCCcCCCChHHHHHHHH
Q psy7291          79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN-YLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~-~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      +++|++|+++..+++|++.|+++|++++|+|++++||||...|.++.+.++ ++.|+|+|+..||++..+.+..
T Consensus       508 V~LiG~Gs~v~~cl~AA~~L~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~  581 (632)
T KOG0523|consen  508 VILIGTGSEVQECLEAAELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAW  581 (632)
T ss_pred             EEEEeccHHHHHHHHHHHHHHhcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehh
Confidence            999999999999999999999999999999999999999999999988775 7888888998888887765544

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase

Probab=99.74  E-value=1.3e-17  Score=147.52  Aligned_cols=136  Identities=14%  Similarity=0.154  Sum_probs=108.2

Q ss_pred             CcccCCHHHHHHHHHHHHh------CCCcEEEEecccccccccCCCCcccCCC-cccccCc--e-EEEeeccccccCCCc
Q psy7291           1 VVSPYNSEDAKGLLKAAIR------DPDPVVFLENELLYGVQYPMGDEALSKD-FVLPIGK--A-KVEKQGEAFYHLDAP   70 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~------~~~P~~iR~~~~~~~~~~~~~~~~~~~~-~~~~~g~--~-~vl~~~~~~~~~~~~   70 (158)
                      |+.|+|+.|+..+++++++      .++|+|||+.+..+...  .   ..... ..+..|+  . +++++..        
T Consensus       655 v~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p--~---~~~~~~~~~~~gi~kg~y~l~~~~--------  721 (889)
T TIGR03186       655 AWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQP--S---LPEDRLDAVRRGILKGMYPLDPAA--------  721 (889)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCC--C---cCCCcccchhcchhheeeEeeccC--------
Confidence            5899999999999999776      57999999865544221  1   11111 1234443  4 6676310        


Q ss_pred             ccccCCCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCC---cCCCChHH-
Q psy7291          71 VIRVTGKDITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGG---WPQCGIGS-  145 (158)
Q Consensus        71 ~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~---~~~GG~g~-  145 (158)
                         .+|.+++|+++|.++..|++|++.|+++ ||+++|+++.++||||++.+.  +++++.|+++|||   +..||||+ 
T Consensus       722 ---~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~v~ggLg~~  796 (889)
T TIGR03186       722 ---LAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSPHVAQALGAT  796 (889)
T ss_pred             ---CCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCcccccccccccHhhhhCCC
Confidence               0177999999999999999999999997 999999999999999999876  6888999999998   99999999 


Q ss_pred             ------------HHHHHHHcC
Q psy7291         146 ------------EISARIMEI  154 (158)
Q Consensus       146 ------------~i~~~l~~~  154 (158)
                                  .+++++.+.
T Consensus       797 ~~p~va~~D~~~avae~i~~~  817 (889)
T TIGR03186       797 QGPVIAATDYVRAVPELIRAY  817 (889)
T ss_pred             CCCeeeecchHHHHHHHHHhh
Confidence                        999999875

Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.

>PTZ00089 transketolase; Provisional

Probab=99.72  E-value=2.3e-17  Score=143.94  Aligned_cols=121  Identities=14%  Similarity=0.141  Sum_probs=93.1

Q ss_pred             CcccCCHHHHHHHHHHHHh-CCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIR-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|+.|+..|+++|++ .++|+|||+++...+.       +......+..++.+++++..            .+.|+
T Consensus       491 V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~-------~~~~~~~~~~~g~~vl~~~~------------~~~dv  551 (661)
T PTZ00089        491 VIRPADGTETSGAYALALANAKTPTILCLSRQNTPP-------LPGSSIEGVLKGAYIVVDFT------------NSPQL  551 (661)
T ss_pred             EEecCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCC-------cCCCccccccCceEEEeccC------------CCCCE
Confidence            6899999999999999994 5799999986542211       11111233445567888610            03799


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH---Hh-CCCeEEEEeCCcCCC
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS---VM-KTNYLISVEGGWPQC  141 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~---~~-~~~~vvvvEe~~~~G  141 (158)
                      +||++|+++..|++|++.|++ |++++||++++++|||++.+...   +. ++..++++|+|...|
T Consensus       552 ~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g  616 (661)
T PTZ00089        552 ILVASGSEVSLCVEAAKALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFG  616 (661)
T ss_pred             EEEeeCHHHHHHHHHHHHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHH
Confidence            999999999999999999999 99999999999999999975433   44 455799999998644

>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated

Probab=99.72  E-value=1.6e-16  Score=129.50  Aligned_cols=149  Identities=16%  Similarity=0.193  Sum_probs=109.0

Q ss_pred             CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCC--CCc--c--cCCCcccccCce---EEEe--------
Q psy7291           1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPM--GDE--A--LSKDFVLPIGKA---KVEK--------   59 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~--~~~--~--~~~~~~~~~g~~---~vl~--------   59 (158)
                      |++|+|+||+.++..+|++    .+-||++|....+.|.+.++  .+.  .  .+.++. .+|..   ....        
T Consensus       138 vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  216 (352)
T PRK07119        138 VLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWA-VTGTKGRRKNIITSLFLDPE  216 (352)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCc-cCCCCCCceeccCCcccCHH
Confidence            5789999999999999997    47899999887776654332  110  0  111111 11211   1110        


Q ss_pred             -------e--ccc----cccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh
Q psy7291          60 -------Q--GEA----FYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM  126 (158)
Q Consensus        60 -------~--~~~----~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~  126 (158)
                             .  .+.    .+....+.+..++.|++||++|+++..+++|++.|+++|++++++++++++|||.+.|.++++
T Consensus       217 ~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~  296 (352)
T PRK07119        217 ELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELAD  296 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHh
Confidence                   0  000    001122344455789999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCcCCCChHHHHHHHHH
Q psy7291         127 KTNYLISVEGGWPQCGIGSEISARIM  152 (158)
Q Consensus       127 ~~~~vvvvEe~~~~GG~g~~i~~~l~  152 (158)
                      ++++|+|+|++.  |.+..+|...+.
T Consensus       297 ~~k~VivvE~n~--g~l~~ei~~~~~  320 (352)
T PRK07119        297 KGKGFLSVEMSM--GQMVEDVRLAVN  320 (352)
T ss_pred             CCCEEEEEeCCc--cHHHHHHHHHhC
Confidence            999999999994  779888887663

>PRK12753 transketolase; Reviewed

Probab=99.70  E-value=1.7e-16  Score=138.46  Aligned_cols=121  Identities=19%  Similarity=0.224  Sum_probs=89.3

Q ss_pred             CcccCCHHHHHHHHHHHHh-CCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIR-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|+.|+..++++|++ .++|+|||++|...+.-+.   . ......+..|+ +++++.+            .+.|+
T Consensus       490 v~~PaD~~E~~~~~~~al~~~~gP~~irl~R~~~~~~~~---~-~~~~~~~~~G~-~vl~~~~------------~~~dv  552 (663)
T PRK12753        490 TWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQER---T-PEQVKNIARGG-YILKDSG------------GKPDL  552 (663)
T ss_pred             EEccCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCCCC---c-ccchhhccCCc-EEEeccC------------CCCCE
Confidence            6899999999999999998 5899999986543211100   0 00012344565 7787720            02499


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHH--HH-HHhC-CCeEEEEeCCc
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETI--TK-SVMK-TNYLISVEGGW  138 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l--~~-~~~~-~~~vvvvEe~~  138 (158)
                      +||++|+++..|++|++.|+++|++++||++++++|||++.+  ++ .+.. ....+++|+|.
T Consensus       553 ~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~  615 (663)
T PRK12753        553 ILIATGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGI  615 (663)
T ss_pred             EEEEeCHHHHHHHHHHHHHHhcCCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccCh
Confidence            999999999999999999999999999999999999999975  22 1222 22459999983

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated

Probab=99.67  E-value=2.2e-15  Score=123.88  Aligned_cols=150  Identities=17%  Similarity=0.207  Sum_probs=108.7

Q ss_pred             CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCCC--C--ccc-------C------CCcc-----cc---
Q psy7291           1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPMG--D--EAL-------S------KDFV-----LP---   51 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~~--~--~~~-------~------~~~~-----~~---   51 (158)
                      |++|+|.||+.++...|++    ++.|++++....+.|...++.  +  ...       .      ..+.     +.   
T Consensus       138 vl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (376)
T PRK08659        138 ALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAYKPFDDPEGGVPPMP  217 (376)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCccccCCCCCCCCCCCCCc
Confidence            5899999999999999997    478999998776666543321  0  000       0      0000     00   


Q ss_pred             -cCceEE--Ee---ec---------------------cc---ccc-CCCcccccCCCcEEEEEechhHHHHHHHHHHHHh
Q psy7291          52 -IGKAKV--EK---QG---------------------EA---FYH-LDAPVIRVTGKDITIVGHSKAVETALDAAKILAG  100 (158)
Q Consensus        52 -~g~~~v--l~---~~---------------------~~---~~~-~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~  100 (158)
                       +|....  .+   +.                     +.   ... ..++.+..++.|++||++|+++..+++|++.|++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs~~~~a~eAv~~Lr~  297 (376)
T PRK08659        218 AFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAYGSVARSARRAVKEARE  297 (376)
T ss_pred             cCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEeCccHHHHHHHHHHHHh
Confidence             021111  00   00                     00   001 2344445567899999999999999999999999


Q ss_pred             CCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHH
Q psy7291         101 QGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIM  152 (158)
Q Consensus       101 ~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~  152 (158)
                      +|++++++++++++|||.+.|.++++++++|+|+|+|  .|.+..++...+.
T Consensus       298 ~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~--~g~l~~el~~~~~  347 (376)
T PRK08659        298 EGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN--LGQMSLEVERVVN  347 (376)
T ss_pred             cCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999  4888888887764

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=99.66  E-value=1.4e-15  Score=131.55  Aligned_cols=150  Identities=14%  Similarity=0.143  Sum_probs=105.3

Q ss_pred             CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCCC--Cc-cc--CCCcccccCceEEE-------ee---c
Q psy7291           1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPMG--DE-AL--SKDFVLPIGKAKVE-------KQ---G   61 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~~--~~-~~--~~~~~~~~g~~~vl-------~~---~   61 (158)
                      |++|+|.||+.++..+|++    ++-||++|......|.+.++.  +. ..  ..++..++..|..+       ++   .
T Consensus       130 vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (595)
T TIGR03336       130 CLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLS  209 (595)
T ss_pred             EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHH
Confidence            5899999999999999997    588999998877776553321  00 00  00011111112111       00   0


Q ss_pred             ---cc---cccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEe
Q psy7291          62 ---EA---FYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVE  135 (158)
Q Consensus        62 ---~~---~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvE  135 (158)
                         ..   .....++.+..++.|++||++|+++..++++++++   |+++++++++++||||++.|.+++++++.|+|+|
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~~~~~~vivvE  286 (595)
T TIGR03336       210 KQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFLSGVEEVLVVE  286 (595)
T ss_pred             HHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHHhcCCeEEEEe
Confidence               00   11112333334468999999999999999988775   9999999999999999999999999999999999


Q ss_pred             CCcCCCChHHHHHHHHHcCC
Q psy7291         136 GGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus       136 e~~~~GG~g~~i~~~l~~~~  155 (158)
                      ||.  +++++.+...+.+.+
T Consensus       287 e~~--~~~~~~~~~~~~~~~  304 (595)
T TIGR03336       287 ELE--PVVEEQVKALAGTAG  304 (595)
T ss_pred             CCc--cHHHHHHHHHHHhcC
Confidence            998  567777766665543

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed

Probab=99.66  E-value=2e-15  Score=124.00  Aligned_cols=80  Identities=18%  Similarity=0.148  Sum_probs=74.0

Q ss_pred             ccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHH
Q psy7291          71 VIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISAR  150 (158)
Q Consensus        71 ~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~  150 (158)
                      .+..++.|++||+||+++..+.+|++.|+++|++++++++++++|||++.|+++++++++|+|+|++.  |.|+.+|.+.
T Consensus       269 ~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~--Gql~~~v~~~  346 (375)
T PRK09627        269 EYMLDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM--GQYLEEIERV  346 (375)
T ss_pred             eeCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh--HHHHHHHHHH
Confidence            34445689999999999999999999999999999999999999999999999999999999999998  9999999888


Q ss_pred             HH
Q psy7291         151 IM  152 (158)
Q Consensus       151 l~  152 (158)
                      +.
T Consensus       347 ~~  348 (375)
T PRK09627        347 MQ  348 (375)
T ss_pred             hC
Confidence            74

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed

Probab=99.64  E-value=2e-15  Score=133.90  Aligned_cols=137  Identities=18%  Similarity=0.208  Sum_probs=104.3

Q ss_pred             CcccCCHHHHHHHHHHHHh----CCC--cEEEEecccccccccCCCCcccCCCcccccCce-EEEeeccccccCCCcccc
Q psy7291           1 VVSPYNSEDAKGLLKAAIR----DPD--PVVFLENELLYGVQYPMGDEALSKDFVLPIGKA-KVEKQGEAFYHLDAPVIR   73 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~----~~~--P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~vl~~~~~~~~~~~~~~~   73 (158)
                      |++|+|+.|+..+++++++    .++  |.|||+....+..  +   . .+..+.+.+||. +++++.+.         .
T Consensus       660 v~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~~--~---~-~pe~~~~~igKg~y~Lr~g~~---------~  724 (891)
T PRK09405        660 SYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYHQ--P---A-MPEGAEEGILKGMYKLETAEG---------K  724 (891)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCC--C---C-CCcccccccceEEEEeccCCC---------C
Confidence            5899999999999999876    445  7778863221111  1   0 112345678886 88887200         0


Q ss_pred             cCCCcEEEEEechhHHHHHHHHHHHHh-CCCcEEEEEeccccCCCHHHHHHHH---------hCCCeEEEEeCCcCCCCh
Q psy7291          74 VTGKDITIVGHSKAVETALDAAKILAG-QGIDAEVINLRSLRPLDIETITKSV---------MKTNYLISVEGGWPQCGI  143 (158)
Q Consensus        74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~-~gi~~~vi~~~~l~Pld~~~l~~~~---------~~~~~vvvvEe~~~~GG~  143 (158)
                      .++.+++|+++|.++..|++|++.|++ +||+++|+++.++||||.+.+....         +++..|+++|+|  .||+
T Consensus       725 ~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~--~gG~  802 (891)
T PRK09405        725 KGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKG--AEGP  802 (891)
T ss_pred             CCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcc--cCCc
Confidence            002389999999999999999999998 7999999999999999999887766         567789999999  6888


Q ss_pred             H-------HHHHHHHHcC
Q psy7291         144 G-------SEISARIMEI  154 (158)
Q Consensus       144 g-------~~i~~~l~~~  154 (158)
                      +       +.+++.|++.
T Consensus       803 ~Vtv~D~~~aVae~la~~  820 (891)
T PRK09405        803 VVAATDYMKLFAEQIRAF  820 (891)
T ss_pred             EEEecchHHHHHHHHHHh
Confidence            8       8888888764

>PRK12754 transketolase; Reviewed

Probab=99.61  E-value=6.5e-15  Score=128.34  Aligned_cols=126  Identities=17%  Similarity=0.171  Sum_probs=90.5

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |+.|+|+.|+..+++++++. ++|+|||+++...+.-+.    .......+..|+ +++++..            .+.|+
T Consensus       490 V~~PaD~~E~~~~~~~a~~~~~gP~yirl~R~~~p~~~~----~~~~~~~~~~G~-~vl~~~~------------~~~dv  552 (663)
T PRK12754        490 TWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQER----TEEQLANIARGG-YVLKDCA------------GQPEL  552 (663)
T ss_pred             EecCCCHHHHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC----ccchhhhcccCc-EEEEecC------------CCCCE
Confidence            68999999999999999986 799999987543221110    000012345565 6777620            01499


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH--HHH-HHhCC-CeEEEEeCCcCCCChH
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET--ITK-SVMKT-NYLISVEGGWPQCGIG  144 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~--l~~-~~~~~-~~vvvvEe~~~~GG~g  144 (158)
                      +||++|+++..|++|++.|+++||+++||++++++|||++.  .++ .+... ...+++|.+. ..|+.
T Consensus       553 ~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~-~~~w~  620 (663)
T PRK12754        553 IFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGI-ADYWY  620 (663)
T ss_pred             EEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeeccc-ccchh
Confidence            99999999999999999999999999999999999999972  333 23222 2358999864 33443

>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed

Probab=99.55  E-value=3.5e-14  Score=117.87  Aligned_cols=83  Identities=23%  Similarity=0.362  Sum_probs=74.3

Q ss_pred             CcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHH
Q psy7291          69 APVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEIS  148 (158)
Q Consensus        69 ~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~  148 (158)
                      ++.+..++.+++||++|+++..+++|++.|+++|++++++++++++|||.+.|.++++++++|+|+|++...||+|+.+.
T Consensus       260 ~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~  339 (407)
T PRK09622        260 VETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFN  339 (407)
T ss_pred             eeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHH
Confidence            34444567899999999999999999999999999999999999999999999999999999999999999999997554


Q ss_pred             HHH
Q psy7291         149 ARI  151 (158)
Q Consensus       149 ~~l  151 (158)
                      +.+
T Consensus       340 ev~  342 (407)
T PRK09622        340 EVT  342 (407)
T ss_pred             HHH
Confidence            443

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit

Probab=99.55  E-value=5.7e-14  Score=120.82  Aligned_cols=79  Identities=18%  Similarity=0.278  Sum_probs=73.2

Q ss_pred             cccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291          72 IRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        72 ~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      +..++.+++||+||++...+.+|++.|+++|++++++++++++|||.+.|.++++++++|+|+|++. .|.+..+|...+
T Consensus       459 ~~~~da~~~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~-~Gql~~~v~~~~  537 (562)
T TIGR03710       459 YGDEDADVLVIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNA-TGQLAKLLRAET  537 (562)
T ss_pred             ecCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccCh-hhhHHHHHHHHh
Confidence            3445689999999999999999999999999999999999999999999999999999999999997 499999998876

The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional

Probab=99.52  E-value=5.7e-14  Score=125.06  Aligned_cols=124  Identities=15%  Similarity=0.142  Sum_probs=91.9

Q ss_pred             CcccCCHHHHHHHHHHHHh----C--CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCccccc
Q psy7291           1 VVSPYNSEDAKGLLKAAIR----D--PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRV   74 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~----~--~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~   74 (158)
                      |+.|+|+.|+..+++.+++    .  ++|+|||+.+..+.+..  -..  .....+..|+ .++++..            
T Consensus       668 V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~--~~~--~~~~~i~kG~-y~l~~~~------------  730 (896)
T PRK13012        668 AYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPA--LPE--GAEEGILKGM-YRLAAAA------------  730 (896)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCC--CCc--cchhccccCc-EEEeccC------------
Confidence            5899999999999998773    2  67999998765543211  000  0123455676 4453310            


Q ss_pred             CCCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChH----HHHHH
Q psy7291          75 TGKDITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIG----SEISA  149 (158)
Q Consensus        75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g----~~i~~  149 (158)
                      ++.+++||++|+++..|++|++.|+++ ||+++|+++.+++|||++.+..           |+|+..||+|    +.+.+
T Consensus       731 ~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg~~~~sy~~~  799 (896)
T PRK13012        731 EAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAEEARVPYVTQ  799 (896)
T ss_pred             CCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCccccccHHHH
Confidence            156999999999999999999999999 9999999999999999997733           8888888888    54444


Q ss_pred             HHH
Q psy7291         150 RIM  152 (158)
Q Consensus       150 ~l~  152 (158)
                      .|.
T Consensus       800 ~l~  802 (896)
T PRK13012        800 CLA  802 (896)
T ss_pred             hhc
Confidence            443

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed

Probab=99.47  E-value=7.8e-13  Score=118.40  Aligned_cols=134  Identities=18%  Similarity=0.206  Sum_probs=99.7

Q ss_pred             CcccCCHHHHHHHHHHHH-hC-CCcEEEEecccccccccCCCC--cccCCCcccccCceEEEeeccccccCCCcccccCC
Q psy7291           1 VVSPYNSEDAKGLLKAAI-RD-PDPVVFLENELLYGVQYPMGD--EALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTG   76 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~-~~-~~P~~iR~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g   76 (158)
                      |+.|+++.++..+|+.++ +. +.|++|.++|.+|+.+..+..  +.....+...+++.. .++               +
T Consensus       741 Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~---------------~  804 (924)
T PRK09404        741 VCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELD---------------P  804 (924)
T ss_pred             EEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccC---------------c
Confidence            578999999999999864 65 599999999999865422111  111111222222221 122               5


Q ss_pred             CcE--EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC---CeEEEEeCCcCCCChHHHHHHHH
Q psy7291          77 KDI--TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT---NYLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        77 ~~~--~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~---~~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      .++  +|||||.++..++++++.+..  .++.||++++|+|||.+.|.++++++   +++++++|...+.|....|...|
T Consensus       805 ~~v~r~iv~~Gk~~~~~~~a~~~~~~--~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~  882 (924)
T PRK09404        805 KKVKRVVLCSGKVYYDLLEARRKRGI--DDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHL  882 (924)
T ss_pred             cceeEEEEEcCHHHHHHHHHHHhCCC--CCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHH
Confidence            678  799999999999999875532  48999999999999999999999997   48889988888999988777665


Q ss_pred             H
Q psy7291         152 M  152 (158)
Q Consensus       152 ~  152 (158)
                      .
T Consensus       883 ~  883 (924)
T PRK09404        883 E  883 (924)
T ss_pred             H
Confidence            4

>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=99.41  E-value=1.6e-12  Score=107.29  Aligned_cols=83  Identities=14%  Similarity=0.233  Sum_probs=72.5

Q ss_pred             cccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChH---HH
Q psy7291          70 PVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIG---SE  146 (158)
Q Consensus        70 ~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g---~~  146 (158)
                      +.+..+++|++||++|+....+.+|++.|+++|++++++++++++|||.+.|.++++++++|+|+|++...|++|   .+
T Consensus       253 e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~l~~e  332 (390)
T PRK08366        253 ETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGILFTE  332 (390)
T ss_pred             eecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccHHHHH
Confidence            344455789999999999999999999999999999999999999999999999999999999999998767754   45


Q ss_pred             HHHHHH
Q psy7291         147 ISARIM  152 (158)
Q Consensus       147 i~~~l~  152 (158)
                      +...|.
T Consensus       333 v~~~l~  338 (390)
T PRK08366        333 AKGALY  338 (390)
T ss_pred             HHHHHh
Confidence            555543

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]

Probab=99.40  E-value=9.1e-12  Score=106.19  Aligned_cols=150  Identities=21%  Similarity=0.261  Sum_probs=108.5

Q ss_pred             CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCC--CC----cccCCC-cc-cccCceEEEee--------
Q psy7291           1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPM--GD----EALSKD-FV-LPIGKAKVEKQ--------   60 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~--~~----~~~~~~-~~-~~~g~~~vl~~--------   60 (158)
                      |+.|+|+||++++++.+++    ++.|+++|.+++..|.+..+  +.    ...+.. +. ..++++ ++.+        
T Consensus       142 vLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~-V~~p~~~~~~~~  220 (640)
T COG4231         142 VLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRY-VRVPANALRHRH  220 (640)
T ss_pred             eecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccce-eecCcccchhhH
Confidence            6899999999999999997    47899999999988876433  21    111111 11 122322 2211        


Q ss_pred             ----ccc----cccCCCccccc---CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC
Q psy7291          61 ----GEA----FYHLDAPVIRV---TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN  129 (158)
Q Consensus        61 ----~~~----~~~~~~~~~~~---~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~  129 (158)
                          .+|    ......+.++.   +..++-||+.|..+..+.||++.|   |++..++.+.+.+|||.+.+.+++++.+
T Consensus       221 ~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~~Plp~~~i~~F~~g~~  297 (640)
T COG4231         221 RKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTPYPLPEQLIENFLKGLE  297 (640)
T ss_pred             HHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCCcCCCHHHHHHHHhcCc
Confidence                011    11222233332   137899999999999999998877   8889999999999999999999999999


Q ss_pred             eEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291         130 YLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus       130 ~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      +|+||||..+  =+-.++.+.+.+++.
T Consensus       298 ~vlVVEE~~P--~iE~qv~~~l~~~g~  322 (640)
T COG4231         298 RVLVVEEGEP--FIEEQVKALLYDAGL  322 (640)
T ss_pred             EEEEEecCCc--hHHHHHHHHHHhcCC
Confidence            9999999997  356778888876654

>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=99.37  E-value=4.6e-12  Score=104.78  Aligned_cols=84  Identities=19%  Similarity=0.210  Sum_probs=74.8

Q ss_pred             cccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCC---CChHHH
Q psy7291          70 PVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQ---CGIGSE  146 (158)
Q Consensus        70 ~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~---GG~g~~  146 (158)
                      +.+..++.|++||++|+....+.+|++.|+++|++++++++++++|||.+.|.++++++++|+|+|.+...   |.+..+
T Consensus       255 e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~d  334 (394)
T PRK08367        255 EEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFAD  334 (394)
T ss_pred             EEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHH
Confidence            33445578999999999999999999999999999999999999999999999999999999999999753   456788


Q ss_pred             HHHHHHc
Q psy7291         147 ISARIME  153 (158)
Q Consensus       147 i~~~l~~  153 (158)
                      |.+.|..
T Consensus       335 V~aal~~  341 (394)
T PRK08367        335 ASAALVN  341 (394)
T ss_pred             HHHHHhc
Confidence            8888854

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component

Probab=99.33  E-value=3e-11  Score=108.12  Aligned_cols=139  Identities=15%  Similarity=0.205  Sum_probs=91.8

Q ss_pred             CcccCCHHHHHHHHH-HHHhC-CCcEEEEecccccccccCCC--CcccCCCcccccCceEEEeeccccccCCCcccccCC
Q psy7291           1 VVSPYNSEDAKGLLK-AAIRD-PDPVVFLENELLYGVQYPMG--DEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTG   76 (158)
Q Consensus         1 V~~P~d~~e~~~~l~-~a~~~-~~P~~iR~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g   76 (158)
                      |+.|+++.++..+|+ +|++. +.|++|.++|.+|+.+..+.  .++....+...++..  .+...        ....++
T Consensus       743 Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~~--~~~~~--------~~~~~~  812 (929)
T TIGR00239       743 VCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEI--EESGL--------SLDPEG  812 (929)
T ss_pred             EEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCcccccccc--ccccc--------ccCccC
Confidence            578999999999999 79986 89999999999986543111  011111222223211  11100        000013


Q ss_pred             CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC---eEEEEeCCcCCCChHHHHHHHH
Q psy7291          77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN---YLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~---~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      -+.+|+++| ++...+++ ++++.+|+++.||++++|+|||.+.|.+.++++.   .++.+.|...+.|-=..|...|
T Consensus       813 v~~vv~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl  888 (929)
T TIGR00239       813 VKRLVLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHL  888 (929)
T ss_pred             CcEEEEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHH
Confidence            455666666 66666666 6677779999999999999999999999999885   6777776666666444444433

The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=4.1e-10  Score=96.39  Aligned_cols=127  Identities=20%  Similarity=0.275  Sum_probs=91.9

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |+.|+|..|...+++.|++. ++|+++.++|...    |.-+.   .........++++++..           .++.|+
T Consensus       490 V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQnl----p~l~~---t~~~~~~kGaYvl~~~~-----------~~~pd~  551 (663)
T COG0021         490 VIRPADANETAAAWKYALERKDGPTALILTRQNL----PVLER---TDLEGVAKGAYVLKDSG-----------GEDPDV  551 (663)
T ss_pred             eEecCChHHHHHHHHHHHhcCCCCeEEEEecCCC----CccCC---CccccccCccEEEeecC-----------CCCCCE
Confidence            68999999999999999985 8999999865433    32111   11122233466777620           014799


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH--HHH-HHhC-CCeEEEEeCCcCCCChHHH
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET--ITK-SVMK-TNYLISVEGGWPQCGIGSE  146 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~--l~~-~~~~-~~~vvvvEe~~~~GG~g~~  146 (158)
                      +||++||.+..|++|++.|+++|+++.||++++...|+++.  .++ .+.. ....+.+|-+.. .|+...
T Consensus       552 iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~-~~W~ky  621 (663)
T COG0021         552 ILIATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSA-LGWYKY  621 (663)
T ss_pred             EEEecccHHHHHHHHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccc-cchhhh
Confidence            99999999999999999999888999999999999999864  333 3332 234688998774 555443

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=99.05  E-value=1.2e-09  Score=100.05  Aligned_cols=151  Identities=15%  Similarity=0.083  Sum_probs=103.6

Q ss_pred             CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCCC--Cc-c---cCCCcccccC----ceEEE--------
Q psy7291           1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPMG--DE-A---LSKDFVLPIG----KAKVE--------   58 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~~--~~-~---~~~~~~~~~g----~~~vl--------   58 (158)
                      |+.|+|+||++++..++++    ++.||.+|.+++..|.+..+.  +. .   .+..+..++|    +|...        
T Consensus       169 vl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~  248 (1159)
T PRK13030        169 VLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEAR  248 (1159)
T ss_pred             eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHH
Confidence            6899999999999999997    478999999988887654332  10 0   1111222331    22211        


Q ss_pred             -ee--cc--c-cccCCCcccc--cCCCcEEEEEechhHHHHHHHHHHHHhCC-----CcEEEEEeccccCCCHHHHHHHH
Q psy7291          59 -KQ--GE--A-FYHLDAPVIR--VTGKDITIVGHSKAVETALDAAKILAGQG-----IDAEVINLRSLRPLDIETITKSV  125 (158)
Q Consensus        59 -~~--~~--~-~~~~~~~~~~--~~g~~~~ii~~G~~~~~a~ea~~~L~~~g-----i~~~vi~~~~l~Pld~~~l~~~~  125 (158)
                       .+  ..  . +..+.++...  ..+.++.||++|.....+.||++.|...+     +.+.++++.+.+|||.+.+.+++
T Consensus       249 ~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~~F~  328 (1159)
T PRK13030        249 LAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLREFA  328 (1159)
T ss_pred             HHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHHHHH
Confidence             00  00  1 1123444333  22467999999999999999999885432     24789999999999999999999


Q ss_pred             hCCCeEEEEeCCcCCCChHHHHHHHHHc
Q psy7291         126 MKTNYLISVEGGWPQCGIGSEISARIME  153 (158)
Q Consensus       126 ~~~~~vvvvEe~~~~GG~g~~i~~~l~~  153 (158)
                      ++++.|+||||...  =+-.++.+.|.+
T Consensus       329 ~g~d~VlVVEE~~p--~iE~Qlk~~l~~  354 (1159)
T PRK13030        329 DGLEEILVIEEKRP--VIEQQIKDYLYN  354 (1159)
T ss_pred             hcCCEEEEEeCCch--HHHHHHHHHHHh
Confidence            99999999999985  234455555543

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated

Probab=99.02  E-value=3.1e-09  Score=97.16  Aligned_cols=153  Identities=14%  Similarity=0.087  Sum_probs=106.4

Q ss_pred             CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCCC--C-c--c-cCCCcccccC----ceEEE--------
Q psy7291           1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPMG--D-E--A-LSKDFVLPIG----KAKVE--------   58 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~~--~-~--~-~~~~~~~~~g----~~~vl--------   58 (158)
                      |+.|+|+||++++..++++    ++.||.+|.+++..+.+..+.  + .  . .+..+..+.+    +|...        
T Consensus       177 vl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~~~~~~  256 (1165)
T PRK09193        177 VLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLEQEARL  256 (1165)
T ss_pred             eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCCcHHHHHHH
Confidence            6899999999999999987    478999999988877654331  1 1  0 1112333444    33211        


Q ss_pred             -eec----cc-cccCCCccccc--CCCcEEEEEechhHHHHHHHHHHHHhC-----CCcEEEEEeccccCCCHHHHHHHH
Q psy7291          59 -KQG----EA-FYHLDAPVIRV--TGKDITIVGHSKAVETALDAAKILAGQ-----GIDAEVINLRSLRPLDIETITKSV  125 (158)
Q Consensus        59 -~~~----~~-~~~~~~~~~~~--~g~~~~ii~~G~~~~~a~ea~~~L~~~-----gi~~~vi~~~~l~Pld~~~l~~~~  125 (158)
                       .+.    .. +..+.++....  .+.++.||+.|..+..+.||++.|...     .+.++++++.+.||||.+.+.+++
T Consensus       257 ~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~lg~~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa  336 (1165)
T PRK09193        257 LDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDLGLDEETAARLGIRLYKVGMVWPLEPQGVRAFA  336 (1165)
T ss_pred             HHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHcCCChhhhcccCCCEEEeCCCCCCCHHHHHHHH
Confidence             000    01 11234444331  146899999999999999999887221     123899999999999999999999


Q ss_pred             hCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291         126 MKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus       126 ~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ++.+.|+||||..+  =+-++|.+.+.+.+
T Consensus       337 ~g~~~vlVVEE~~p--~iE~qlk~~l~~~~  364 (1165)
T PRK09193        337 EGLDEILVVEEKRQ--IIEYQLKEELYNWP  364 (1165)
T ss_pred             hcCCEEEEEecCch--HHHHHHHHHHhhcc
Confidence            99999999999885  35567777765543

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=98.97  E-value=9e-09  Score=94.18  Aligned_cols=153  Identities=15%  Similarity=0.108  Sum_probs=105.5

Q ss_pred             CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCCC--Ccc----cCCCcccccC----ceEEE--------
Q psy7291           1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPMG--DEA----LSKDFVLPIG----KAKVE--------   58 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~~--~~~----~~~~~~~~~g----~~~vl--------   58 (158)
                      |+.|+|.||+.++..++++    ++-||.+|.+++..+.+..+.  +..    .+..+..++|    +|...        
T Consensus       180 vl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~~~e~~~  259 (1186)
T PRK13029        180 VLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLAQEERM  259 (1186)
T ss_pred             eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcccccCCccccccccCCCcHHHHHHH
Confidence            6899999999999999987    478999999988877654331  110    1112322332    12111        


Q ss_pred             -eec--c--c-cccCCCcccc--cCCCcEEEEEechhHHHHHHHHHHHHhC-----CCcEEEEEeccccCCCHHHHHHHH
Q psy7291          59 -KQG--E--A-FYHLDAPVIR--VTGKDITIVGHSKAVETALDAAKILAGQ-----GIDAEVINLRSLRPLDIETITKSV  125 (158)
Q Consensus        59 -~~~--~--~-~~~~~~~~~~--~~g~~~~ii~~G~~~~~a~ea~~~L~~~-----gi~~~vi~~~~l~Pld~~~l~~~~  125 (158)
                       .+.  .  . +..+.++...  ..+.++.||+.|..+..+.||+++|...     .+.++++++.+.||||.+.+.+++
T Consensus       260 ~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa  339 (1186)
T PRK13029        260 LEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLLKVGCVWPLDPQSVREFA  339 (1186)
T ss_pred             HHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCCEEEeCCCCCCCHHHHHHHH
Confidence             000  0  1 1123444333  2247899999999999999999887221     123899999999999999999999


Q ss_pred             hCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291         126 MKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus       126 ~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ++.+.|+||||..+  =+-++|.+.+.+.+
T Consensus       340 ~g~d~vlVVEE~~p--~iE~qlk~~l~~~~  367 (1186)
T PRK13029        340 QGLEEVLVVEEKRA--VIEYQLKEELYNWR  367 (1186)
T ss_pred             hcCCEEEEEecCch--HHHHHHHHHHhhcc
Confidence            99999999999885  35667777775543

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric

Probab=98.91  E-value=9.8e-09  Score=94.79  Aligned_cols=86  Identities=13%  Similarity=0.195  Sum_probs=74.4

Q ss_pred             CcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHH-hCCCeEEEEeCCcCCC----Ch
Q psy7291          69 APVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSV-MKTNYLISVEGGWPQC----GI  143 (158)
Q Consensus        69 ~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~-~~~~~vvvvEe~~~~G----G~  143 (158)
                      ++.+..++.+.+||++|+....+.+|++.|+++|+++++|+++.++|||.+.|.+.+ ++.++|+|+|.+...|    -+
T Consensus       257 ~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL  336 (1165)
T TIGR02176       257 FDYYGAPDAERVIIAMGSVAETIEETVDYLNAKGEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPL  336 (1165)
T ss_pred             ceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChH
Confidence            455556678999999999999999999999999999999999999999999999977 5889999999996544    36


Q ss_pred             HHHHHHHHHcC
Q psy7291         144 GSEISARIMEI  154 (158)
Q Consensus       144 g~~i~~~l~~~  154 (158)
                      ..+|.+.|...
T Consensus       337 ~~DV~~al~~~  347 (1165)
T TIGR02176       337 YLDVVSAFYEM  347 (1165)
T ss_pred             HHHHHHHHhhc
Confidence            78888888653

This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.

>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]

Probab=98.60  E-value=2.4e-07  Score=76.24  Aligned_cols=72  Identities=22%  Similarity=0.347  Sum_probs=57.4

Q ss_pred             CCCcEEEEEechhHHHHHHHHHH-HHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHH
Q psy7291          75 TGKDITIVGHSKAVETALDAAKI-LAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSE  146 (158)
Q Consensus        75 ~g~~~~ii~~G~~~~~a~ea~~~-L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~  146 (158)
                      ++.+++||+||+....+.+++.. ++++|++++++++++++|||.+.+.+++++.+.+.|++-....||+++-
T Consensus       255 ~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~~~~~  327 (365)
T COG0674         255 EDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGGLAEP  327 (365)
T ss_pred             CCcCEEEEEeccchHhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCccchhh
Confidence            57899999999777777777655 5588999999999999999999999999987756666655555665433

>PRK05261 putative phosphoketolase; Provisional

Probab=98.24  E-value=1.6e-05  Score=70.86  Aligned_cols=121  Identities=17%  Similarity=0.153  Sum_probs=78.2

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |+.|+|+.|+..+++.|++. ++|.+|..+|+..+.-... +.   ....+..| +.++..++.    ..    ..+.|+
T Consensus       550 V~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~~~~~-~~---a~~~~~kG-ayi~~~a~~----~~----~~~pDv  616 (785)
T PRK05261        550 VYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQWLSM-DE---ARKHCTKG-LGIWDWASN----DD----GEEPDV  616 (785)
T ss_pred             EEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCcccCCh-HH---HHHhccCc-eEEEEeccC----CC----CCCCCE
Confidence            57899999999999999975 7899998765433211000 00   01123344 334442100    00    013699


Q ss_pred             EEEEechhHHH-HHHHHHHHHhC--CCcEEEEEeccc--------cC--CCHHHHHHHHhCCCeEEEE
Q psy7291          80 TIVGHSKAVET-ALDAAKILAGQ--GIDAEVINLRSL--------RP--LDIETITKSVMKTNYLISV  134 (158)
Q Consensus        80 ~ii~~G~~~~~-a~ea~~~L~~~--gi~~~vi~~~~l--------~P--ld~~~l~~~~~~~~~vvvv  134 (158)
                      +|+++|+.... |++|++.|+++  |+++.||++.-+        .|  ++.+.+..+....+.|++.
T Consensus       617 vL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~  684 (785)
T PRK05261        617 VLACAGDVPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFA  684 (785)
T ss_pred             EEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEE
Confidence            99999999998 99999999999  999999998432        11  3445566666555555544

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=96.66  E-value=0.014  Score=53.48  Aligned_cols=129  Identities=12%  Similarity=0.101  Sum_probs=86.7

Q ss_pred             CcccCCHHHHHHHHH-HHHh-CCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCc
Q psy7291           1 VVSPYNSEDAKGLLK-AAIR-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKD   78 (158)
Q Consensus         1 V~~P~d~~e~~~~l~-~a~~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~   78 (158)
                      |..|+.+..--.+|+ +|+. ...|.++..||.+.+.+..+.     ....|.-|+++-+-.+..    ..+   ...-+
T Consensus      1044 Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S-----~vedFT~g~F~pVi~D~~----~~~---~~~V~ 1111 (1228)
T PRK12270       1044 VAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVS-----DVEDFTEGKFRPVIDDPT----VDD---GAKVR 1111 (1228)
T ss_pred             EEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcC-----CHHHhccCCceecCCCCC----CCC---cccee
Confidence            467999999989998 4554 478999999998776543221     223445566654432100    000   00236


Q ss_pred             EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC----CeEEEEeCCcCCCCh
Q psy7291          79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT----NYLISVEGGWPQCGI  143 (158)
Q Consensus        79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~----~~vvvvEe~~~~GG~  143 (158)
                      -+|+++|..+....+..+  +...-++.++.+-.|+|||.+.|.+.+.++    +.+++=||-.-.|-|
T Consensus      1112 RVlLcSGKvYYdL~a~R~--k~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw 1178 (1228)
T PRK12270       1112 RVLLCSGKLYYDLAARRE--KDGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAW 1178 (1228)
T ss_pred             EEEEEcchhHHHHHHHHH--hcCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCc
Confidence            789999999887665433  233357999999999999999999998876    456777876656665

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type

Probab=95.93  E-value=0.036  Score=50.31  Aligned_cols=104  Identities=14%  Similarity=0.230  Sum_probs=69.0

Q ss_pred             cccCCHHHHHHHHHHHHh----CCCcEEEEecc--cccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccC
Q psy7291           2 VSPYNSEDAKGLLKAAIR----DPDPVVFLENE--LLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVT   75 (158)
Q Consensus         2 ~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~   75 (158)
                      +.|+...|+..++++.++    .+.-+|.|++.  ..|...  .-+.-  ....+..| ..++++...         ...
T Consensus       655 ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp--~~p~~--~~egIlkG-~Y~l~~~~~---------~~~  720 (885)
T TIGR00759       655 YDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQP--PMPEG--AEEGILKG-LYRFETSTE---------EKA  720 (885)
T ss_pred             ecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCC--CCCcc--hHHhHHhC-ceecccCCC---------CCC
Confidence            579999999999888876    35688888775  333221  10000  01112223 334443100         000


Q ss_pred             CCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHH
Q psy7291          76 GKDITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIE  119 (158)
Q Consensus        76 g~~~~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~  119 (158)
                      +.++.|++.|+++..+++|++.|.++ |+.++|+++.+..=|..+
T Consensus       721 ~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd  765 (885)
T TIGR00759       721 KGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARD  765 (885)
T ss_pred             CccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHh
Confidence            25799999999999999999999986 999999999887666555

WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.

>KOG0450|consensus

Probab=94.72  E-value=0.18  Score=44.95  Aligned_cols=131  Identities=11%  Similarity=0.041  Sum_probs=83.9

Q ss_pred             cccCCHHHHHHHHHHHHh--CCCcEEEEecccccccccCCCCcccCCCccccc--CceEEEeeccccccCCCcccccCCC
Q psy7291           2 VSPYNSEDAKGLLKAAIR--DPDPVVFLENELLYGVQYPMGDEALSKDFVLPI--GKAKVEKQGEAFYHLDAPVIRVTGK   77 (158)
Q Consensus         2 ~~P~d~~e~~~~l~~a~~--~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~vl~~~~~~~~~~~~~~~~~g~   77 (158)
                      +.++.|.....+|+.-+.  ...|.+|..+|.+.+....+..     -..+.-  |-.+++.+...      .....++-
T Consensus       826 vn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~-----~~ef~~g~~fq~vi~e~g~------~~~~pe~v  894 (1017)
T KOG0450|consen  826 VNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSS-----FSEFDEGTGFQRVIPEDGK------AAQNPENV  894 (1017)
T ss_pred             EecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCC-----HHHhccCCCCceecccccc------ccCChhhc
Confidence            456777778888886664  5899999988877643211110     011111  22233333100      00001155


Q ss_pred             cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC---eEEEEeCCcCCCChH
Q psy7291          78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN---YLISVEGGWPQCGIG  144 (158)
Q Consensus        78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~---~vvvvEe~~~~GG~g  144 (158)
                      +-+|+++|..+....++.+.... --++.+..+-.|.|||.+.+++-++++.   -++.=|||.-.|++.
T Consensus       895 krlv~csGkVyydL~k~Rk~~~~-~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~  963 (1017)
T KOG0450|consen  895 KRLVFCSGKVYYDLTKERKEVGL-EGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWD  963 (1017)
T ss_pred             eEEEEecceEehhhhHHHHhcCc-ccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCchh
Confidence            78999999988776666554432 2368999999999999999999888764   577779998778774

>KOG0451|consensus

Probab=92.39  E-value=0.77  Score=40.16  Aligned_cols=129  Identities=16%  Similarity=0.192  Sum_probs=82.4

Q ss_pred             CcccCCHHHHHHHHHHHH-h-CCCcEEEEecccccccccCCCCcccCCCcccccCce--EEEeeccccccCCCcccccCC
Q psy7291           1 VVSPYNSEDAKGLLKAAI-R-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKA--KVEKQGEAFYHLDAPVIRVTG   76 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~-~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~vl~~~~~~~~~~~~~~~~~g   76 (158)
                      |+-|..+.+...+|+.-+ . +..|.++-.||.+.+.  |....   -...+.+|..  .|+.+. .    ..    .+.
T Consensus       731 vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRl--PaA~S---T~~ef~PGTtf~nVigd~-~----~~----p~k  796 (913)
T KOG0451|consen  731 VVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRL--PAATS---THEEFQPGTTFHNVIGDT-I----AK----PEK  796 (913)
T ss_pred             EeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhC--cchhh---hHhhcCCCcccccccccc-c----cC----hhH
Confidence            467899999999998544 3 5889998777655432  22110   0111222211  122110 0    00    013


Q ss_pred             CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC----eEEEEeCCcCCCChH
Q psy7291          77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN----YLISVEGGWPQCGIG  144 (158)
Q Consensus        77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~----~vvvvEe~~~~GG~g  144 (158)
                      -+.+|++.|.-.....+..+.+..+. .+.++.+-.+-|||-+.|...+++++    .|+.=||+.-.|-++
T Consensus       797 vkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWs  867 (913)
T KOG0451|consen  797 VKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWS  867 (913)
T ss_pred             heEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcce
Confidence            46788999988877766666554332 38999999999999999988888764    688999998777653

>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=91.92  E-value=1.5  Score=33.30  Aligned_cols=59  Identities=22%  Similarity=0.291  Sum_probs=40.9

Q ss_pred             CCcEEEEEech-hHHHHHHHHHHHHhC--CCcEEEEEeccc--------cC--CCHHHHHHHHhCCCeEEEE
Q psy7291          76 GKDITIVGHSK-AVETALDAAKILAGQ--GIDAEVINLRSL--------RP--LDIETITKSVMKTNYLISV  134 (158)
Q Consensus        76 g~~~~ii~~G~-~~~~a~ea~~~L~~~--gi~~~vi~~~~l--------~P--ld~~~l~~~~~~~~~vvvv  134 (158)
                      ..|+++.+.|. .+.+++.|+..|++.  ++++.+|++--|        .|  |+.+.+..+....+.|++.
T Consensus        34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa  105 (203)
T PF09363_consen   34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA  105 (203)
T ss_dssp             T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE
T ss_pred             CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE
Confidence            57999999997 557899999999988  788888766544        23  6677888888777777764

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

Probab=90.62  E-value=1.9  Score=39.61  Aligned_cols=127  Identities=16%  Similarity=0.150  Sum_probs=80.9

Q ss_pred             CcccCCHHHHHHHHHHHH-h-CCCcEEEEecccccccccCCCCcccCCCcccccCceE-EEeeccccccCCCcccccCCC
Q psy7291           1 VVSPYNSEDAKGLLKAAI-R-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAK-VEKQGEAFYHLDAPVIRVTGK   77 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~-~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-vl~~~~~~~~~~~~~~~~~g~   77 (158)
                      |..|+.+.....+++.-. . ...|.+|..||.+.+....+.     ....+.-|+.+ ++.+..         .....-
T Consensus       723 V~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S-----~~~el~~~~F~~vl~d~~---------~~~~~v  788 (906)
T COG0567         723 VVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVS-----SLEELTEGTFQPVLEDID---------ELDPKV  788 (906)
T ss_pred             EEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCC-----chhhhchhhhhhhhcccc---------ccccce
Confidence            467899999998887444 3 468999988876654322111     11111222222 222210         000124


Q ss_pred             cEEEEEechhHHHHHHHHHHHHhCC-CcEEEEEeccccCCCHHHHHHHHhCC----CeEEEEeCCcCCCChH
Q psy7291          78 DITIVGHSKAVETALDAAKILAGQG-IDAEVINLRSLRPLDIETITKSVMKT----NYLISVEGGWPQCGIG  144 (158)
Q Consensus        78 ~~~ii~~G~~~~~a~ea~~~L~~~g-i~~~vi~~~~l~Pld~~~l~~~~~~~----~~vvvvEe~~~~GG~g  144 (158)
                      +.++++.|.+.....+..   .+.| .++.++.+..|+|||.+.+...++++    ..++.=||-.-.|.+.
T Consensus       789 ~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~  857 (906)
T COG0567         789 KRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY  857 (906)
T ss_pred             eeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH
Confidence            568889998887766554   3333 57999999999999999988888765    4678888877677765

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=90.50  E-value=1.4  Score=28.67  Aligned_cols=68  Identities=15%  Similarity=0.069  Sum_probs=45.7

Q ss_pred             CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh--C--CCeEEEEeCCcCCCChHHHH
Q psy7291          76 GKDITIVGHS----KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM--K--TNYLISVEGGWPQCGIGSEI  147 (158)
Q Consensus        76 g~~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~--~--~~~vvvvEe~~~~GG~g~~i  147 (158)
                      ..+++|++.|    +.+..+.+|.+.|.+.|++...+++..    |.+...++.+  +  +-..+++.. ...||+....
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g-~~iGG~~~l~   81 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNG-ELVGGCDIVK   81 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECC-EEEeCHHHHH
Confidence            5789999988    478888899999999999999999753    3332222222  1  224566654 4479986544


Q ss_pred             H
Q psy7291         148 S  148 (158)
Q Consensus       148 ~  148 (158)
                      +
T Consensus        82 ~   82 (90)
T cd03028          82 E   82 (90)
T ss_pred             H
Confidence            3

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=89.60  E-value=4.1  Score=34.03  Aligned_cols=77  Identities=18%  Similarity=0.171  Sum_probs=58.2

Q ss_pred             CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC---CeEEEEeCCcCCCChH--HHHHHH
Q psy7291          76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT---NYLISVEGGWPQCGIG--SEISAR  150 (158)
Q Consensus        76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~---~~vvvvEe~~~~GG~g--~~i~~~  150 (158)
                      |.+++++..|.-...-.+.++.   .|.++.+++..|=.|+|.+.+.+.+++.   +.|.++-.-+++|=+-  .+|+..
T Consensus        80 gdkVLv~~nG~FG~R~~~ia~~---~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~  156 (383)
T COG0075          80 GDKVLVVVNGKFGERFAEIAER---YGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKA  156 (383)
T ss_pred             CCeEEEEeCChHHHHHHHHHHH---hCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHH
Confidence            7899999999988876665554   4889999999999999999999999843   4556665555544433  567777


Q ss_pred             HHcCC
Q psy7291         151 IMEIP  155 (158)
Q Consensus       151 l~~~~  155 (158)
                      +.++|
T Consensus       157 ~k~~g  161 (383)
T COG0075         157 AKEHG  161 (383)
T ss_pred             HHHcC
Confidence            76664

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions

Probab=89.35  E-value=1.7  Score=31.54  Aligned_cols=55  Identities=16%  Similarity=0.284  Sum_probs=43.2

Q ss_pred             EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC
Q psy7291          79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG  136 (158)
Q Consensus        79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe  136 (158)
                      ++||+-|.....+.++++.|++.|+.+=.|-.   ...|.+.|..+..+-.+|+++++
T Consensus       110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~---~~~~~~eL~~ias~p~~vf~v~~  164 (165)
T cd01481         110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGA---RNADLAELQQIAFDPSFVFQVSD  164 (165)
T ss_pred             EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeC---CcCCHHHHHHHhCCCccEEEecC
Confidence            56788887777788899999998866544433   45799999999988889999875

The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]

Probab=89.08  E-value=2.5  Score=37.97  Aligned_cols=100  Identities=17%  Similarity=0.215  Sum_probs=63.6

Q ss_pred             cccCCHHHHHHHHHHHHhC-------CCcEEEEecccccccc-cCCCCcccCCCcccccCceEEEeeccccccCCCcccc
Q psy7291           2 VSPYNSEDAKGLLKAAIRD-------PDPVVFLENELLYGVQ-YPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIR   73 (158)
Q Consensus         2 ~~P~d~~e~~~~l~~a~~~-------~~P~~iR~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~   73 (158)
                      +.|+-..|+.-++++.++.       +.-.||+.-...|... -|.+.     ...+.-| ...++...          .
T Consensus       658 YdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~qPamp~ga-----e~gI~kG-~Y~l~~~~----------~  721 (887)
T COG2609         658 YDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQPAMPEGA-----EEGIIKG-IYKLETPG----------G  721 (887)
T ss_pred             cCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCCCCCCCcc-----hhhhhhc-eeEeecCC----------C
Confidence            5788899999888888861       3356777544444321 01110     1122223 23444310          0


Q ss_pred             cCCCcEEEEEechhHHHHHHHHHHHHh-CCCcEEEEEeccccCCC
Q psy7291          74 VTGKDITIVGHSKAVETALDAAKILAG-QGIDAEVINLRSLRPLD  117 (158)
Q Consensus        74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~-~gi~~~vi~~~~l~Pld  117 (158)
                      ..+.++.|++.|.....+++|++.|.+ .|+.++|+++.+..-|.
T Consensus       722 ~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~  766 (887)
T COG2609         722 QGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELA  766 (887)
T ss_pred             CCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHh
Confidence            014789999999999999999999987 68999999887654443

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=88.62  E-value=2.1  Score=28.36  Aligned_cols=71  Identities=15%  Similarity=0.134  Sum_probs=46.7

Q ss_pred             CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChHHHHH
Q psy7291          76 GKDITIVGHS----KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIGSEIS  148 (158)
Q Consensus        76 g~~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g~~i~  148 (158)
                      ..+++|++.|    +.+..+.+|.+.|.+.|++...+++.. .|--.+.+.+.-. .+-..+++.... .||+.+...
T Consensus        11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~-~~~~~~~l~~~tg~~tvP~vfi~g~~-iGG~ddl~~   86 (97)
T TIGR00365        11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE-DPEIRQGIKEYSNWPTIPQLYVKGEF-VGGCDIIME   86 (97)
T ss_pred             cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEE-EeChHHHHH
Confidence            5789999988    578888899999999999999998853 2211222333221 122456677544 788865443

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=87.37  E-value=2.2  Score=29.24  Aligned_cols=42  Identities=19%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291          86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT  128 (158)
Q Consensus        86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~  128 (158)
                      +.+..+.+|.+-|+++|+.+.++++.- .|++.+.|.+.++..
T Consensus         8 p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~   49 (113)
T cd03033           8 PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDL   49 (113)
T ss_pred             CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence            466788889999999999999999997 899999998888744

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=87.11  E-value=2.5  Score=25.99  Aligned_cols=66  Identities=14%  Similarity=0.082  Sum_probs=42.6

Q ss_pred             cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC-CCeEEEEeCCcCCCChHHH
Q psy7291          78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK-TNYLISVEGGWPQCGIGSE  146 (158)
Q Consensus        78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~-~~~vvvvEe~~~~GG~g~~  146 (158)
                      +++|.+. +.+..+.+|.+.|++.|++...+++..-.+ ..+.+.+.... .-.++++... ..||.-+.
T Consensus         2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~~-~iGg~~~~   68 (73)
T cd03027           2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNEK-LVGGLTDL   68 (73)
T ss_pred             EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCE-EEeCHHHH
Confidence            3455544 556778888889999999999998875322 23345554433 3356666654 47888543

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]

Probab=86.83  E-value=1.3  Score=39.71  Aligned_cols=119  Identities=16%  Similarity=0.161  Sum_probs=64.2

Q ss_pred             CcccCCHHHHHHHHHHHHhCCC-cEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPD-PVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~-P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |+-|.|..-+..+..++++..+ -..|-.+|+..+.......    ......-| .-+...++.     ..+    ..|+
T Consensus       561 vyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~q----A~~~~~~G-~~iwewas~-----d~g----epdv  626 (793)
T COG3957         561 VYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQ----AEKHCTDG-AGIWEWASG-----DDG----EPDV  626 (793)
T ss_pred             EecCCCCcchhhhhhHHhhccCceEEEEecCCCcceeecHHH----HHHHhhcC-cEEEEeccC-----CCC----CCCE
Confidence            4679999999999999998643 3333222322111111000    00001112 112222100     000    3579


Q ss_pred             EEEEechh-HHHHHHHHHHHHhCC--CcEEE---EEeccccCCC-------HHHHHHHHhCCCeEEE
Q psy7291          80 TIVGHSKA-VETALDAAKILAGQG--IDAEV---INLRSLRPLD-------IETITKSVMKTNYLIS  133 (158)
Q Consensus        80 ~ii~~G~~-~~~a~ea~~~L~~~g--i~~~v---i~~~~l~Pld-------~~~l~~~~~~~~~vvv  133 (158)
                      ++.+.|.+ +-.+++|+..|++++  +.+.+   +++..+.|-.       ...+..+.-..+.++.
T Consensus       627 V~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif  693 (793)
T COG3957         627 VMACAGDVPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIF  693 (793)
T ss_pred             EEEecCCcchHHHHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCcceee
Confidence            99999984 577999999999998  66555   4556665533       3445555444444544

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=85.42  E-value=2.3  Score=28.66  Aligned_cols=42  Identities=29%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291          86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT  128 (158)
Q Consensus        86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~  128 (158)
                      +.+..+.+|.+-|++.|+.+..+++.- .|++.+.|.++++..
T Consensus         4 ~~C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~~   45 (110)
T PF03960_consen    4 PNCSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSKL   45 (110)
T ss_dssp             TT-HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHHh
Confidence            356788899999999999999999996 899999888877643

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1

Probab=85.30  E-value=3.6  Score=28.97  Aligned_cols=66  Identities=18%  Similarity=0.251  Sum_probs=45.4

Q ss_pred             chhHHHHHHHHHHHHhCCCcEEEEEeccccCCC-------------H--HHHHHHHhCCCeEEEEeCCcCCCChHHHHHH
Q psy7291          85 SKAVETALDAAKILAGQGIDAEVINLRSLRPLD-------------I--ETITKSVMKTNYLISVEGGWPQCGIGSEISA  149 (158)
Q Consensus        85 G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld-------------~--~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~  149 (158)
                      |.+...+..+.+.+++.|+++++++++-. |++             .  +.+.+.+...+.+|++=--+ .|++...+..
T Consensus        14 ~~t~~l~~~~~~~l~~~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y-~~~~s~~lK~   91 (152)
T PF03358_consen   14 SNTRKLAEAVAEQLEEAGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVY-NGSVSGQLKN   91 (152)
T ss_dssp             SHHHHHHHHHHHHHHHTTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEB-TTBE-HHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCEEEEEecccc-chhhcccccccccCCcHHHHHHHhceecCCeEEEeecEE-cCcCChhhhH
Confidence            44455666677788888999999999986 322             1  33556666778888877666 6888877766


Q ss_pred             HHH
Q psy7291         150 RIM  152 (158)
Q Consensus       150 ~l~  152 (158)
                      ++-
T Consensus        92 ~lD   94 (152)
T PF03358_consen   92 FLD   94 (152)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....

>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]

Probab=84.43  E-value=3.1  Score=30.38  Aligned_cols=58  Identities=19%  Similarity=0.164  Sum_probs=40.4

Q ss_pred             CcEEEEEechhH----HHHHHHHHHHHhCCC---cEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291          77 KDITIVGHSKAV----ETALDAAKILAGQGI---DAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW  138 (158)
Q Consensus        77 ~~~~ii~~G~~~----~~a~ea~~~L~~~gi---~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~  138 (158)
                      ..++|+++|+..    ..-..++++|++...   ++.+++.-+.-|.    +...+..++.+++|+--.
T Consensus         2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~----l~~~l~~~d~vIIVDav~   66 (160)
T COG0680           2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPN----LLGLLAGYDPVIIVDAVL   66 (160)
T ss_pred             CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHH----HHHHhcCCCcEEEEEeee
Confidence            358889999854    223456677766543   6889999996554    556677888899988543

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=84.32  E-value=9.3  Score=25.31  Aligned_cols=66  Identities=15%  Similarity=0.238  Sum_probs=44.9

Q ss_pred             CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-----CCCeEEEEeCCcCCCChHH
Q psy7291          76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-----KTNYLISVEGGWPQCGIGS  145 (158)
Q Consensus        76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-----~~~~vvvvEe~~~~GG~g~  145 (158)
                      ..+++|.+. +.+..+.+|.+.|.+.|++..++++.. .|-..+ +.+.+.     .+=..|++.... .||+..
T Consensus         7 ~~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~~-~~~~l~~~tg~~tvP~Vfi~g~~-iGG~dd   77 (99)
T TIGR02189         7 EKAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGKD-IENALSRLGCSPAVPAVFVGGKL-VGGLEN   77 (99)
T ss_pred             cCCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHHH-HHHHHHHhcCCCCcCeEEECCEE-EcCHHH
Confidence            456777777 778899999999999999999999875 333222 323332     233566777544 699865

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=83.92  E-value=3.5  Score=27.79  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=37.1

Q ss_pred             hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC
Q psy7291          86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN  129 (158)
Q Consensus        86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~  129 (158)
                      +.+..+.+|.+.|++.|+.+.++++.. .|+..+.|.++++..+
T Consensus         7 ~~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g   49 (105)
T cd03035           7 KNCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG   49 (105)
T ss_pred             CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence            466788889999999999999999987 8999999998887543

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=83.78  E-value=3.6  Score=28.79  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=36.0

Q ss_pred             hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC
Q psy7291          86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK  127 (158)
Q Consensus        86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~  127 (158)
                      +.++.+.+|.+-|+++|+.+.++|+.- .|++.+.|...++.
T Consensus         9 p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~   49 (126)
T TIGR01616         9 PGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGN   49 (126)
T ss_pred             CCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHH
Confidence            467889999999999999999999987 89999988888775

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=83.59  E-value=5.4  Score=29.30  Aligned_cols=50  Identities=20%  Similarity=0.391  Sum_probs=33.8

Q ss_pred             CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEE
Q psy7291          76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLIS  133 (158)
Q Consensus        76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvv  133 (158)
                      +++++||+.|.++...  +++.|.++|.++.+++-.+      +.+.+.++..+-||+
T Consensus        44 gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIs   93 (168)
T cd01080          44 GKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIV   93 (168)
T ss_pred             CCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEE
Confidence            7899999999886653  3556777788777777442      345566666554443

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains

Probab=83.50  E-value=0.89  Score=35.19  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=25.0

Q ss_pred             CcccCCHHHHHHHHHHHHh----CCCcEEEEecccc
Q psy7291           1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELL   32 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~   32 (158)
                      |++|+|.||+.++...|++    ...||+++....+
T Consensus       121 vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~  156 (230)
T PF01855_consen  121 VLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFL  156 (230)
T ss_dssp             EEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCC
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhh
Confidence            5789999999999999987    4889999865433

This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=83.37  E-value=9  Score=24.14  Aligned_cols=60  Identities=23%  Similarity=0.342  Sum_probs=39.2

Q ss_pred             cEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcC
Q psy7291          78 DITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWP  139 (158)
Q Consensus        78 ~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~  139 (158)
                      +++|++.+. ....+++.+..|+..|+.+.+ +.+. +.+....-..-..+...++++.+...
T Consensus         3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~e~   63 (91)
T cd00860           3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDKEV   63 (91)
T ss_pred             EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcchh
Confidence            567777765 557888999999999998866 4443 45555432222345677888876543

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>PRK10853 putative reductase; Provisional

Probab=81.46  E-value=4.6  Score=27.89  Aligned_cols=42  Identities=29%  Similarity=0.312  Sum_probs=36.3

Q ss_pred             hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291          86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT  128 (158)
Q Consensus        86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~  128 (158)
                      +.++.+.+|.+-|++.|+.+.++|+.- .|++.+.|.+.++..
T Consensus         8 ~~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~   49 (118)
T PRK10853          8 KNCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDEL   49 (118)
T ss_pred             CCCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence            466788899999999999999999987 899999998888643

>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group

Probab=80.84  E-value=9.3  Score=27.13  Aligned_cols=56  Identities=18%  Similarity=0.195  Sum_probs=37.7

Q ss_pred             EEEEEechhH----HHHHHHHHHHHhC---CCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291          79 ITIVGHSKAV----ETALDAAKILAGQ---GIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW  138 (158)
Q Consensus        79 ~~ii~~G~~~----~~a~ea~~~L~~~---gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~  138 (158)
                      ++|+++|+..    .....+++.|++.   ..++.+++..+. |   ..+.+.+.+++.+++|+--.
T Consensus         1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~-~---~~l~~~l~~~d~viiVDA~~   63 (146)
T cd06062           1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTL-G---LELLPYIEEADRLIIVDAVD   63 (146)
T ss_pred             CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCC-H---HHHHHHHhcCCEEEEEEccc
Confidence            3678888765    3355667777654   345888888874 2   22455667889999999743

These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=80.76  E-value=4.2  Score=28.13  Aligned_cols=43  Identities=23%  Similarity=0.257  Sum_probs=37.0

Q ss_pred             hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC
Q psy7291          86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN  129 (158)
Q Consensus        86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~  129 (158)
                      +.+..+.+|.+-|++.|+...+++..- .|++.+.|.++++..+
T Consensus         9 p~C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~g   51 (117)
T COG1393           9 PNCSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLG   51 (117)
T ss_pred             CCChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHcC
Confidence            356788999999999999999999986 8999999999887653

>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain

Probab=80.72  E-value=11  Score=26.21  Aligned_cols=74  Identities=11%  Similarity=-0.052  Sum_probs=48.8

Q ss_pred             EEEEEechhHHHHHHHHHHH----HhCCCcEEEEEeccc--------------cCCCHHHHHHHHh-CCCeEEEEeCCcC
Q psy7291          79 ITIVGHSKAVETALDAAKIL----AGQGIDAEVINLRSL--------------RPLDIETITKSVM-KTNYLISVEGGWP  139 (158)
Q Consensus        79 ~~ii~~G~~~~~a~ea~~~L----~~~gi~~~vi~~~~l--------------~Pld~~~l~~~~~-~~~~vvvvEe~~~  139 (158)
                      +++++.||....+.+..+.+    ++.--+. -|...|+              .|-..+.|.++.. ++++|+|+==+..
T Consensus         3 illv~fGS~~~~~~~~~~~i~~~l~~~~p~~-~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~   81 (127)
T cd03412           3 ILLVSFGTSYPTAEKTIDAIEDKVRAAFPDY-EVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHII   81 (127)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHHHCCCC-eEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeE
Confidence            78999999887666554443    3332222 2233333              5777788888766 6789999998888


Q ss_pred             CCChHHHHHHHHHc
Q psy7291         140 QCGIGSEISARIME  153 (158)
Q Consensus       140 ~GG~g~~i~~~l~~  153 (158)
                      .|.-...|.+.+.+
T Consensus        82 ~G~e~~di~~~v~~   95 (127)
T cd03412          82 PGEEYEKLKREVDA   95 (127)
T ss_pred             CcHHHHHHHHHHHH
Confidence            77666666666543

CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=80.71  E-value=4.8  Score=24.70  Aligned_cols=59  Identities=20%  Similarity=0.279  Sum_probs=37.6

Q ss_pred             hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHH
Q psy7291          86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGS  145 (158)
Q Consensus        86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~  145 (158)
                      +.+..+.+|.+.|.+.|+....+++.. .|-..+.+...-...-.+++++.....|||-.
T Consensus         7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~   65 (72)
T TIGR02194         7 NNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADGDLSWSGFRP   65 (72)
T ss_pred             CCCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHcCCcccCEEEECCCcEEeccCH
Confidence            445778888888999999999999875 33222333322112335678866546788754

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=80.08  E-value=6  Score=26.86  Aligned_cols=43  Identities=16%  Similarity=0.298  Sum_probs=36.5

Q ss_pred             hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC
Q psy7291          86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN  129 (158)
Q Consensus        86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~  129 (158)
                      +.+..+.+|.+-|++.|+.+..+|+.- .|+..+.+..+++..+
T Consensus         7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~~   49 (112)
T cd03034           7 PRCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKLG   49 (112)
T ss_pred             CCCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHcC
Confidence            467788899999999999999999887 8999998888877543

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
2ozl_B	341	PDHE1-B, pyruvate dehydrogenase E1 component subun	4e-75
2ozl_B	341	PDHE1-B, pyruvate dehydrogenase E1 component subun	4e-04
1w85_B	324	Pyruvate dehydrogenase E1 component, beta subunit;	2e-54
1w85_B	324	Pyruvate dehydrogenase E1 component, beta subunit;	1e-04
1umd_B	324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	7e-54
1umd_B	324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	1e-04
1ik6_A	369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	4e-49
1ik6_A	369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	5e-04
2bfd_B	342	2-oxoisovalerate dehydrogenase beta subunit; oxido	4e-49
2bfd_B	342	2-oxoisovalerate dehydrogenase beta subunit; oxido	5e-04
1qs0_B	338	2-oxoisovalerate dehydrogenase beta-subunit; heter	5e-47
1qs0_B	338	2-oxoisovalerate dehydrogenase beta-subunit; heter	2e-04
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	1e-11
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	2e-11
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	3e-10

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Length = 341

 Score =  226 bits (579), Expect = 4e-75
 Identities = 88/153 (57%), Positives = 116/153 (75%), Gaps = 15/153 (9%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
           VVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV +    EA SKDF++PIGKAK+E+Q
Sbjct: 156 VVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQ 215

Query: 61  GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
           G                 IT+V HS+ V   L+AA +L+ +G++ EVIN+R++RP+D+ET
Sbjct: 216 G---------------THITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMET 260

Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           I  SVMKTN+L++VEGGWPQ G+G+EI ARIME
Sbjct: 261 IEASVMKTNHLVTVEGGWPQFGVGAEICARIME 293

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Length = 341

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 60  QGEAFYHLDAPVIRVTGKDI 79
           +G AF  LDAP +RVTG D+
Sbjct: 293 EGPAFNFLDAPAVRVTGADV 312

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324

 Score =  173 bits (440), Expect = 2e-54
 Identities = 64/153 (41%), Positives = 86/153 (56%), Gaps = 18/153 (11%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
           VV P    DAKGLL +AIRD DPV+FLE+  LY        E    ++ +PIGKA ++++
Sbjct: 144 VVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYR---SFRQEVPEGEYTIPIGKADIKRE 200

Query: 61  GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
           G               KDITI+ +   V  +L AA  L  +GI AEV++LR+++PLDIET
Sbjct: 201 G---------------KDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIET 245

Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           I  SV KT   I V+    Q GI + + A I E
Sbjct: 246 IIGSVEKTGRAIVVQEAQRQAGIAANVVAEINE 278

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 60  QGEAFYHLDAPVIRVTGKDITIVGHSKAVETAL-DAAKILAG 100
              A   L+APV+RV   D T+   ++A    L +   ++  
Sbjct: 277 NERAILSLEAPVLRVAAPD-TVYPFAQAESVWLPNFKDVIET 317

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324

 Score =  171 bits (437), Expect = 7e-54
 Identities = 60/153 (39%), Positives = 83/153 (54%), Gaps = 18/153 (11%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
           VV+     DAKGLLKAAIRD DPVVFLE + LY     + +E   +D+ LPIGKA + ++
Sbjct: 145 VVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYR---SVKEEVPEEDYTLPIGKAALRRE 201

Query: 61  GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
           G               KD+T++ +   +   L AA  LA  G+ AEV++LR+L P D E 
Sbjct: 202 G---------------KDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEA 246

Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           +  SV KT  ++ V          SE++A I E
Sbjct: 247 VMNSVAKTGRVVLVSDAPRHASFVSEVAATIAE 279

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 60  QGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAG 100
             +    L AP IRVTG D T   +++         +IL  
Sbjct: 278 AEDLLDMLLAPPIRVTGFD-TPYPYAQDKLYLPTVTRILNA 317

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369

 Score =  160 bits (408), Expect = 4e-49
 Identities = 59/153 (38%), Positives = 84/153 (54%), Gaps = 21/153 (13%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
           VV P    +AKGLLKAAIR  DPVVFLE ++LY       +E    D+V+ IGKA+V ++
Sbjct: 192 VVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRA---PREEVPEGDYVVEIGKARVARE 248

Query: 61  GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
           G                D+T+V +   V  AL+AA+ +       EV++L++L PLD +T
Sbjct: 249 G---------------DDVTLVTYGAVVHKALEAAERV---KASVEVVDLQTLNPLDFDT 290

Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           + KSV KT  LI         G+G+E+ A + E
Sbjct: 291 VLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAE 323

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 62  EAFYHLDAPVIRVTGKDITI 81
           +A   L APVIR+ G D+  
Sbjct: 324 KALDRLTAPVIRLAGPDVPQ 343

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342

 Score =  160 bits (406), Expect = 4e-49
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 19/154 (12%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
           VV P +   AKGLL + I D +P +F E ++LY       +E   + + +P+ +A+V ++
Sbjct: 162 VVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILY---RAAAEEVPIEPYNIPLSQAEVIQE 218

Query: 61  GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIE 119
           G                D+T+V     V    + A +   + G+  EVI+LR++ P D++
Sbjct: 219 G---------------SDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVD 263

Query: 120 TITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           TI KSV+KT  L+         G  SEIS+ + E
Sbjct: 264 TICKSVIKTGRLLISHEAPLTGGFASEISSTVQE 297

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 62  EAFYHLDAPVIRVTGKDITI 81
           E F +L+AP+ RV G D   
Sbjct: 298 ECFLNLEAPISRVCGYDTPF 317

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338

 Score =  154 bits (392), Expect = 5e-47
 Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 31/166 (18%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSK-------------D 47
            V P N  DAKGLL A+I   DPV+FLE + LY   +    +                  
Sbjct: 146 TVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGY 205

Query: 48  FVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEV 107
           + +P+ KA + + G                D++++ +   V  A  AA      G+DAEV
Sbjct: 206 YTVPLDKAAITRPG---------------NDVSVLTYGTTVYVAQVAA---EESGVDAEV 247

Query: 108 INLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           I+LRSL PLD++TI +SV KT   + V      CG G+E+ + + E
Sbjct: 248 IDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQE 293

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 62  EAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAG 100
             F+HL+AP+ RVTG D T   H++        +++ A 
Sbjct: 294 HCFHHLEAPIERVTGWD-TPYPHAQEWAYFPGPSRVGAA 331

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 31/156 (19%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMG---DEALSKDFVLPIGKAKV 57
           +  P ++ + +G+LK A     P           ++YP G            L  G+ + 
Sbjct: 451 IGLPKDAAELRGMLKYAQTHDGPFA---------IRYPRGNTAQVPAGTWPDLKWGEWER 501

Query: 58  EKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLD 117
            K G                D+ I+   KA++ AL AA+ L G G    V+N R ++PLD
Sbjct: 502 LKGG---------------DDVVILAGGKALDYALKAAEDLPGVG----VVNARFVKPLD 542

Query: 118 IETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
            E + +   +   LI+VE      G G  +   +  
Sbjct: 543 EEMLREVGGRARALITVEDNTVVGGFGGAVLEALNS 578

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 14/106 (13%)

Query: 47  DFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAE 106
           +    +G+AKV  + +                +T++G    +  AL AA++L  + I+  
Sbjct: 482 NEDFQVGQAKVVLKSK-------------DDQVTVIGAGVTLHEALAAAELLKKEKINIR 528

Query: 107 VINLRSLRPLDIETITKSVMKT-NYLISVEGGWPQCGIGSEISARI 151
           V++  +++PLD + I  S   T   +++VE  + + GIG  +S+ +
Sbjct: 529 VLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAV 574

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 23/122 (18%)

Query: 35  VQYPMG---DEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETA 91
           V+YP G      L+    LPIGK  V+++G               + + I+     +  A
Sbjct: 474 VRYPRGNAVGVELTPLEKLPIGKGIVKRRG---------------EKLAILNFGTLMPEA 518

Query: 92  LDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARI 151
              A     + ++A ++++R ++PLD   I +       L++VE      G GS ++  +
Sbjct: 519 AKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVL 573

Query: 152 ME 153
           M 
Sbjct: 574 MA 575

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
2ozl_B	341	PDHE1-B, pyruvate dehydrogenase E1 component subun	99.96
1w85_B	324	Pyruvate dehydrogenase E1 component, beta subunit;	99.95
1umd_B	324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	99.95
2bfd_B	342	2-oxoisovalerate dehydrogenase beta subunit; oxido	99.95
1ik6_A	369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	99.94
1qs0_B	338	2-oxoisovalerate dehydrogenase beta-subunit; heter	99.94
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	99.93
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	99.9
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	99.9
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	99.82
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	99.82
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	99.81
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	99.81
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	99.81
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	99.81
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	99.81
3l84_A	632	Transketolase; TKT, structural genomics, center fo	99.8
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	99.8
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	99.79
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	99.79
3ju3_A	118	Probable 2-oxoacid ferredoxin oxidoreductase, ALP;	99.79
3uk1_A	711	Transketolase; structural genomics, seattle struct	99.79
1yd7_A	395	2-keto acid:ferredoxin oxidoreductase subunit alph	99.75
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	99.73
2qtc_A	886	Pyruvate dehydrogenase E1 component; thiamin dipho	99.55
3ahc_A	845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	99.47
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	99.46
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	90.17
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	86.1
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	84.6
3rpe_A	218	MDAB, modulator of drug activity B; structural gen	82.72
4dik_A	410	Flavoprotein; TM0755, electron transport, DI-iron	80.75
2a5l_A	200	Trp repressor binding protein WRBA; APC5760, PA094	80.24
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	80.17

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B

Probab=99.96  E-value=2.4e-28  Score=197.11  Aligned_cols=140  Identities=63%  Similarity=1.036  Sum_probs=122.3

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|++|++.|+++|++.++|++||+++.+|+.+.++.+.+....+.+.+|+++++++               |.|++
T Consensus       156 V~~Psd~~e~~~~l~~a~~~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~---------------g~dv~  220 (341)
T 2ozl_B          156 VVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQ---------------GTHIT  220 (341)
T ss_dssp             EECCCSHHHHHHHHHHHHHSSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEEC---------------CSSEE
T ss_pred             EEEeCCHHHHHHHHHHHHhcCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEecc---------------CCCEE
Confidence            589999999999999999999999999998776543222111112234567899999988               89999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHc-CC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIME-IP  155 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~-~~  155 (158)
                      ||++|+++..+++|++.|+++|++++||++++++|||++.+.++++++++|+++||+...||||+.|++++.+ ++
T Consensus       221 iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~  296 (341)
T 2ozl_B          221 VVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPA  296 (341)
T ss_dssp             EEECSTHHHHHHHHHHHHHTTTCCEEEEECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTT
T ss_pred             EEEeCHHHHHHHHHHHHHHhcCCCeEEEeeeeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988 65

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*

Probab=99.95  E-value=4.5e-28  Score=194.18  Aligned_cols=137  Identities=47%  Similarity=0.661  Sum_probs=121.3

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|++|++.|+++|+++++|++||+++++++...+   .+....+.+.+|+++++++               |.|++
T Consensus       144 V~~Psd~~e~~~~l~~a~~~~~Pv~i~~p~~l~r~~~~---~~~~~~~~~~~Gk~~~~~~---------------g~dv~  205 (324)
T 1w85_B          144 VVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQ---EVPEGEYTIPIGKADIKRE---------------GKDIT  205 (324)
T ss_dssp             EECCSSHHHHHHHHHHHHHSSSCEEEEEETTTSSSCCE---ECCSSCCCCCTTCCEEEEC---------------CSSEE
T ss_pred             EEeeCCHHHHHHHHHHHHHcCCCEEEEechHhcCCCCC---CCCCccccccCCceEEEec---------------CCCEE
Confidence            58999999999999999999999999999888754211   1112234577899999988               89999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ||++|+++..+++|++.|+++|++++||++++++|||++.+.++++++++++++|||...||||++|++++.+++
T Consensus       206 iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~  280 (324)
T 1w85_B          206 IIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERA  280 (324)
T ss_dssp             EEECTTHHHHHHHHHHHHHHTTCCEEEEECSEEESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHH
T ss_pred             EEEecHHHHHHHHHHHHHHhcCCCEEEEEeeeecCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988764

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*

Probab=99.95  E-value=8.6e-28  Score=192.52  Aligned_cols=137  Identities=44%  Similarity=0.599  Sum_probs=121.4

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|++|++.++++|+++++|++||+++++++...+   .+....+.+.+|+++++++               |.|++
T Consensus       145 V~~P~d~~e~~~~l~~a~~~~~Pv~i~~p~~l~~~~~~---~~~~~~~~~~~Gk~~~~~~---------------g~dv~  206 (324)
T 1umd_B          145 VVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKE---EVPEEDYTLPIGKAALRRE---------------GKDLT  206 (324)
T ss_dssp             EEECCSHHHHHHHHHHHHHCSSCEEEEEEGGGSSSCCE---ECCSSCCCCCTTCCEEEEC---------------CSSEE
T ss_pred             EEEeCCHHHHHHHHHHHHhcCCCEEEEechHhcCCCCC---CcCCCCccccCCcceEEec---------------CCCEE
Confidence            58999999999999999999999999999888754211   1112234567899999988               89999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ||++|+++..+++|++.|+++|++++||++++++|||++.+.++++++++++++|||...||+|+.|++.+.+++
T Consensus       207 iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~  281 (324)
T 1umd_B          207 LICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDL  281 (324)
T ss_dssp             EEECGGGHHHHHHHHHHHHHTTCCEEEEECCEEETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHH
T ss_pred             EEEecHHHHHHHHHHHHHHhcCCCEEEEEeceecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988753

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...

Probab=99.95  E-value=7.7e-28  Score=194.19  Aligned_cols=137  Identities=34%  Similarity=0.535  Sum_probs=121.0

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|++|++.|+++|+++++|++||+++++++...+   ......+.+.+|+++++++               |.|++
T Consensus       162 V~~Psd~~e~~~~l~~a~~~~~Pv~i~~p~~l~r~~~~---~~~~~~~~~~~G~~~v~~~---------------g~dv~  223 (342)
T 2bfd_B          162 VVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAE---EVPIEPYNIPLSQAEVIQE---------------GSDVT  223 (342)
T ss_dssp             EECCSSHHHHHHHHHHHHHSSSCEEEEEEGGGTTSCCE---EEESSCCCCCSSCCEEEEC---------------CSSEE
T ss_pred             EEeeCCHHHHHHHHHHHHhcCCcEEEEecchhcCCCCC---CCCCcccceeCCceEEecc---------------CCCEE
Confidence            58999999999999999999999999999887754211   1111234567899999988               89999


Q ss_pred             EEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          81 IVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ||++|+++..+++|++.|+++ |++++||++++++|||++.+.++++++++++++|||...||||+.|++++.+++
T Consensus       224 iia~G~~~~~a~~Aa~~L~~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~  299 (342)
T 2bfd_B          224 LVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEEC  299 (342)
T ss_dssp             EEECTTHHHHHHHHHHHHHHHHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHHHHHHHhhcCCCEEEEeeeecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhC
Confidence            999999999999999999999 999999999999999999999999999999999999989999999999988754

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2

Probab=99.94  E-value=1.1e-26  Score=189.06  Aligned_cols=134  Identities=44%  Similarity=0.651  Sum_probs=118.0

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|++|++.|+++|++.++|++||+|+++++...+   .+....+.+.+|+++++++               |.|++
T Consensus       192 V~~Psd~~e~~~ll~~A~~~~~Pv~i~~p~~l~r~~~~---~v~~~~~~~~~G~~~v~~~---------------g~dv~  253 (369)
T 1ik6_A          192 VVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAPRE---EVPEGDYVVEIGKARVARE---------------GDDVT  253 (369)
T ss_dssp             EECCCSHHHHHHHHHHHHHSSSCEEEEEEGGGSSCCCE---EEECSSCCCCTTCCEEEEC---------------CSSEE
T ss_pred             EEecCCHHHHHHHHHHHHhCCCCEEEEEehhhhccCCC---CcCCCcccccCCceEEEEc---------------CCCEE
Confidence            58999999999999999999999999999888754211   1111234567899999998               89999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ||++|+++..+++|++.|+  | +++||++++++|||++.|.++++++++++++||+...||||++|++++.+++
T Consensus       254 Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~l~~~~  325 (369)
T 1ik6_A          254 LVTYGAVVHKALEAAERVK--A-SVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKA  325 (369)
T ss_dssp             EEECTTHHHHHHHHHHTSS--S-CEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHHHHHHS
T ss_pred             EEEeCHHHHHHHHHHHHhC--C-CeEEEeeeecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHHHHhhC
Confidence            9999999999999999997  8 9999999999999999999999999999999999999999999999998765

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B

Probab=99.94  E-value=2.9e-26  Score=184.63  Aligned_cols=137  Identities=39%  Similarity=0.566  Sum_probs=117.1

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccC---CCC----------cccCCCcccccCceEEEeeccccccC
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYP---MGD----------EALSKDFVLPIGKAKVEKQGEAFYHL   67 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~---~~~----------~~~~~~~~~~~g~~~vl~~~~~~~~~   67 (158)
                      |++|+|++|++.|+++|++.++|++||+++++++...+   ..+          .+....+.+.+|+++++++       
T Consensus       146 V~~Psd~~e~~~~l~~A~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~-------  218 (338)
T 1qs0_B          146 TVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRP-------  218 (338)
T ss_dssp             EECCCSHHHHHHHHHHHHHSSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSCCCCCTTCCCEEEC-------
T ss_pred             EEeeCCHHHHHHHHHHHHhcCCcEEEEEchHhhcCcccccccCccchhhcccccccCCCCcccccCceeEecC-------
Confidence            58999999999999999999999999999887754322   000          1111233456788888887       


Q ss_pred             CCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHH
Q psy7291          68 DAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEI  147 (158)
Q Consensus        68 ~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i  147 (158)
                              |.|++||++|+++..+++|++.   +|++++||++++++|||++.|.++++++++++++||+...||+|++|
T Consensus       219 --------g~dv~iva~G~~~~~a~~Aa~~---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V  287 (338)
T 1qs0_B          219 --------GNDVSVLTYGTTVYVAQVAAEE---SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAEL  287 (338)
T ss_dssp             --------CSSCEEEECTTHHHHHHHHHHH---HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHH
T ss_pred             --------CCCEEEEEeCHHHHHHHHHHHH---cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHH
Confidence                    8999999999999999999987   59999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCC
Q psy7291         148 SARIMEIP  155 (158)
Q Consensus       148 ~~~l~~~~  155 (158)
                      ++++.+++
T Consensus       288 ~~~l~~~~  295 (338)
T 1qs0_B          288 VSLVQEHC  295 (338)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhc
Confidence            99998765

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=99.93  E-value=8.5e-26  Score=194.25  Aligned_cols=133  Identities=23%  Similarity=0.351  Sum_probs=116.9

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCc--
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKD--   78 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~--   78 (158)
                      |++|+|++|++.|+++|++.++|++||+++...    |   .++.....+.+|+++++++               |.|  
T Consensus       443 V~~P~d~~e~~~~l~~a~~~~gp~~ir~~r~~~----p---~~~~~~~~~~~Gka~vl~e---------------g~d~d  500 (616)
T 3mos_A          443 VFYPSDGVATEKAVELAANTKGICFIRTSRPEN----A---IIYNNNEDFQVGQAKVVLK---------------SKDDQ  500 (616)
T ss_dssp             EECCCSHHHHHHHHHHHHTCCSEEEEECCSSCC----B---CCSCTTCCCCTTCCEEEEC---------------CSSEE
T ss_pred             EEecCCHHHHHHHHHHHHhcCCCEEEEEeCCCC----C---ccCCCcccccCCeEEEEEe---------------CCCCC
Confidence            579999999999999999999999999754321    1   1122234567899999998               555  


Q ss_pred             EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC-CeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291          79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT-NYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus        79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~-~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      ++||++|+++..|++|+++|+++|++++|||+++++|||++.|.++++++ ++|+|+|||...||+|++|++.+++++
T Consensus       501 v~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~~~~  578 (616)
T 3mos_A          501 VTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEP  578 (616)
T ss_dssp             EEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHTTCT
T ss_pred             EEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999998 999999999999999999999999864

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=99.90  E-value=1.3e-23  Score=181.09  Aligned_cols=131  Identities=25%  Similarity=0.290  Sum_probs=115.2

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT   80 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~   80 (158)
                      |++|+|++|++.|+++|++.++|++||+++..+.. .+.     ...+.+++|+++++++               |.|++
T Consensus       451 v~~P~d~~e~~~~~~~a~~~~~Pv~i~~~r~~~~~-~~~-----~~~~~~~~G~~~~~~~---------------g~dv~  509 (629)
T 2o1x_A          451 IGLPKDAAELRGMLKYAQTHDGPFAIRYPRGNTAQ-VPA-----GTWPDLKWGEWERLKG---------------GDDVV  509 (629)
T ss_dssp             EECCSSHHHHHHHHHHHHHSSSCEEEECCSSBCCC-CCT-----TCCCCCCTTCCEEEEC---------------CSSEE
T ss_pred             EEecCCHHHHHHHHHHHHhCCCCEEEEecCCCCCC-Ccc-----cccccccCCceEEEee---------------CCCEE
Confidence            58999999999999999999999999987654321 010     1233467899999998               89999


Q ss_pred             EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291          81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus        81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      ||++|+++..|++|++.|+    +++||++++++|||++.+.++++++++++|+||+...||+|++|++++.++++
T Consensus       510 iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~  581 (629)
T 2o1x_A          510 ILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMNL  581 (629)
T ss_dssp             EEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHHHHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTTC
T ss_pred             EEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHHHHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhCC
Confidence            9999999999999999886    79999999999999999999999999999999999999999999999998763

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=99.90  E-value=1.8e-23  Score=179.99  Aligned_cols=130  Identities=19%  Similarity=0.286  Sum_probs=113.5

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|++|++.|+++|++. ++|++||+++..+... +    . +..+.+..|+++++++               |.|+
T Consensus       448 v~~P~d~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~~~-~----~-~~~~~~~~G~~~~~~~---------------g~dv  506 (621)
T 2o1s_A          448 IMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGV-E----L-TPLEKLPIGKGIVKRR---------------GEKL  506 (621)
T ss_dssp             EECCSSHHHHHHHHHHHHHCCSSCEEEECCSSBCCCC-C----C-CCCCCCCTTCCEEEEC---------------CSSE
T ss_pred             EEecCCHHHHHHHHHHHHHcCCCCEEEEeCCCCCCCC-C----C-CccccccCCceEEeec---------------CCCE
Confidence            58999999999999999998 9999999886554221 1    1 1114567899999998               8999


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      +||++|+++..+++|     ++|++++||++++++|||++.+.++++++++++|+||+...||+|++|++++.++++
T Consensus       507 ~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~  578 (621)
T 2o1s_A          507 AILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHRK  578 (621)
T ss_dssp             EEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCHHHHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTTC
T ss_pred             EEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCHHHHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcCC
Confidence            999999999999999     348999999999999999999999999999999999999999999999999998864

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=99.82  E-value=2e-20  Score=165.56  Aligned_cols=136  Identities=15%  Similarity=0.199  Sum_probs=108.9

Q ss_pred             CcccCCHHHHHHHHHHHHhC--CCcEEEEecccccccccCCCCc--ccCCCcccccCceEE---EeeccccccCCCcccc
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD--PDPVVFLENELLYGVQYPMGDE--ALSKDFVLPIGKAKV---EKQGEAFYHLDAPVIR   73 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~--~~P~~iR~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~v---l~~~~~~~~~~~~~~~   73 (158)
                      |++|+|+.|+..||++++..  ++|++|++||.+|+.+.+..+.  .....+...+|++.+   +++             
T Consensus       680 V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~-------------  746 (868)
T 2yic_A          680 IAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGD-------------  746 (868)
T ss_dssp             EECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCC-------------
T ss_pred             EEEeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeeccccc-------------
Confidence            67999999999999998875  4999999999988654332211  000122225677766   566             


Q ss_pred             cCCCcE--EEEEechhHHHHHHHHHHHHhCC-CcEEEEEeccccCCCHHHHHHHHhCCCe---EEEEeCCcCCCChHHHH
Q psy7291          74 VTGKDI--TIVGHSKAVETALDAAKILAGQG-IDAEVINLRSLRPLDIETITKSVMKTNY---LISVEGGWPQCGIGSEI  147 (158)
Q Consensus        74 ~~g~~~--~ii~~G~~~~~a~ea~~~L~~~g-i~~~vi~~~~l~Pld~~~l~~~~~~~~~---vvvvEe~~~~GG~g~~i  147 (158)
                        |.|+  +|||+|.+ ..++++++  +++| +++.||++++|+|||.+.|.++++++++   |+++||+..+||+|+.|
T Consensus       747 --g~dv~r~Ii~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v  821 (868)
T 2yic_A          747 --RNKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSF  821 (868)
T ss_dssp             --GGGCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHH
T ss_pred             --CCceeEEEEEecHH-HHHHHHHH--HhCCCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHH
Confidence              7889  99999999 56665555  5568 9999999999999999999999999887   99999999999999999


Q ss_pred             HHHHHcC
Q psy7291         148 SARIMEI  154 (158)
Q Consensus       148 ~~~l~~~  154 (158)
                      ++.+.+.
T Consensus       822 ~~~l~e~  828 (868)
T 2yic_A          822 GLTLPEI  828 (868)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998773

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=99.82  E-value=3e-20  Score=167.89  Aligned_cols=136  Identities=15%  Similarity=0.199  Sum_probs=109.8

Q ss_pred             CcccCCHHHHHHHHHHHHhC--CCcEEEEecccccccccCCCCc--ccCCCcccccCceEE---EeeccccccCCCcccc
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD--PDPVVFLENELLYGVQYPMGDE--ALSKDFVLPIGKAKV---EKQGEAFYHLDAPVIR   73 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~--~~P~~iR~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~v---l~~~~~~~~~~~~~~~   73 (158)
                      |++|+|+.|+..||++++..  ++|++||+||.+|+.+.++...  .....+...+|++.+   +++             
T Consensus       925 V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~-------------  991 (1113)
T 2xt6_A          925 IAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGD-------------  991 (1113)
T ss_dssp             EECCSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCC-------------
T ss_pred             EEecCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccC-------------
Confidence            57899999999999998875  4999999999988754332211  001122235677776   666             


Q ss_pred             cCCCcE--EEEEechhHHHHHHHHHHHHhCC-CcEEEEEeccccCCCHHHHHHHHhCCCe---EEEEeCCcCCCChHHHH
Q psy7291          74 VTGKDI--TIVGHSKAVETALDAAKILAGQG-IDAEVINLRSLRPLDIETITKSVMKTNY---LISVEGGWPQCGIGSEI  147 (158)
Q Consensus        74 ~~g~~~--~ii~~G~~~~~a~ea~~~L~~~g-i~~~vi~~~~l~Pld~~~l~~~~~~~~~---vvvvEe~~~~GG~g~~i  147 (158)
                        |.|+  +|||+|.+ ..++++++  +++| +++.||++++|+|||.+.|.++++++++   |+++||+..+||+|+.|
T Consensus       992 --g~dv~r~iv~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v 1066 (1113)
T 2xt6_A          992 --RNKVTRLLLTSGKI-YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSF 1066 (1113)
T ss_dssp             --STTCCEEEEECSTH-HHHHHHHH--HHHTCTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHH
T ss_pred             --ccccCEEEEEECHH-HHHHHHHH--HhCCCCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHH
Confidence              8889  99999998 66666655  4568 9999999999999999999999999987   99999999999999999


Q ss_pred             HHHHHcC
Q psy7291         148 SARIMEI  154 (158)
Q Consensus       148 ~~~l~~~  154 (158)
                      ++.+.+.
T Consensus      1067 ~~~l~e~ 1073 (1113)
T 2xt6_A         1067 GLTLPEI 1073 (1113)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998873

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=99.81  E-value=2.4e-20  Score=161.29  Aligned_cols=125  Identities=18%  Similarity=0.178  Sum_probs=100.9

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCc-ccccCceEEEeeccccccCCCcccccCCCc
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDF-VLPIGKAKVEKQGEAFYHLDAPVIRVTGKD   78 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~   78 (158)
                      |++|+|++|++.++++|++. ++|+|||+++..++.       .....+ .+..| .+++++.             ++.|
T Consensus       485 V~~Pad~~E~~~~l~~A~~~~~~Pv~i~~~r~~~~~-------~~~~~~~~~~~G-~~vl~~g-------------~~~d  543 (651)
T 2e6k_A          485 VIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPL-------LSPEKARGLLRG-GYVLEDV-------------EEPQ  543 (651)
T ss_dssp             EECCSSHHHHHHHHHHHHHCCSSCEEEECCSSCBCC-------CCHHHHGGGGGS-SEEEECC-------------SSCS
T ss_pred             EEecCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCC-------CCcchhhhhcCC-CEEEeeC-------------CCCC
Confidence            58999999999999999997 899999987654321       110111 24556 4677771             0289


Q ss_pred             EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH---HHHHHhCCCeEEEEeCCcCCCChHHHH
Q psy7291          79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET---ITKSVMKTNYLISVEGGWPQCGIGSEI  147 (158)
Q Consensus        79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~---l~~~~~~~~~vvvvEe~~~~GG~g~~i  147 (158)
                      ++||++|+++..|++|++.|+++|++++||++++++|||.+.   +..+++.+++++++|++.. +|+++.+
T Consensus       544 v~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~vv~vE~~~~-~G~~~~v  614 (651)
T 2e6k_A          544 GVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPEAYRKEVLPPGLPVVAVEAGAS-LGWERYA  614 (651)
T ss_dssp             EEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC
T ss_pred             EEEEEECHHHHHHHHHHHHHHhcCCcEEEEecCcCCccccccHHHHHHHhCcCCeEEEEeCCcc-CchHHhC
Confidence            999999999999999999999999999999999999999985   6666666678999999997 8888654

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}

Probab=99.81  E-value=8.7e-20  Score=158.49  Aligned_cols=119  Identities=19%  Similarity=0.238  Sum_probs=96.3

Q ss_pred             CcccCCHHHHHHHHHHHHhCC---CcEEEEecccccccccCCCCcccCC-CcccccCceEEEeeccccccCCCcccccCC
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDP---DPVVFLENELLYGVQYPMGDEALSK-DFVLPIGKAKVEKQGEAFYHLDAPVIRVTG   76 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~---~P~~iR~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g   76 (158)
                      |++|+|+.|++.||++|++.+   +|++||+++...+.       +... .+.+..|+ +++++               |
T Consensus       520 V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~-------~~~~~~~~~~~G~-~vlr~---------------g  576 (700)
T 3rim_A          520 VVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPV-------LDGTDAEGVARGG-YVLSD---------------A  576 (700)
T ss_dssp             EECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECC-------CTTCCHHHHHHSC-EEEEC---------------C
T ss_pred             EEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCC-------cCcccccccCCCc-EEEec---------------C
Confidence            689999999999999999875   59999986543221       1111 24567787 68887               4


Q ss_pred             C--------cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHH--HHH-HHHhC-CCeEEEEeCCcCCCC
Q psy7291          77 K--------DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIE--TIT-KSVMK-TNYLISVEGGWPQCG  142 (158)
Q Consensus        77 ~--------~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~--~l~-~~~~~-~~~vvvvEe~~~~GG  142 (158)
                      .        |++||++|+++..|++|++.|+++||+++|||+++++|||.+  .+. .+++. ++.+|++|++...|+
T Consensus       577 ~~~~~~~~~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~  654 (700)
T 3rim_A          577 GGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCW  654 (700)
T ss_dssp             SCCCTTCCCSEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGG
T ss_pred             CccccCCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhH
Confidence            3        999999999999999999999999999999999999999994  344 44453 678999999997765

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=99.81  E-value=6.7e-20  Score=159.17  Aligned_cols=123  Identities=20%  Similarity=0.195  Sum_probs=98.0

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcc-cccCceEEEeeccccccCCCcccccCC--
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFV-LPIGKAKVEKQGEAFYHLDAPVIRVTG--   76 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~vl~~~~~~~~~~~~~~~~~g--   76 (158)
                      |++|+|+.|++.|+++|++. ++|++||++|...+.       .....+. +..| .+++++               |  
T Consensus       498 V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~~~~~-------~~~~~~~~~~~G-~~vl~~---------------g~~  554 (680)
T 1gpu_A          498 VWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQ-------LEGSSIESASKG-GYVLQD---------------VAN  554 (680)
T ss_dssp             EECCCSHHHHHHHHHHHHHCSSCCEEEECCSSCBCC-------CTTCCHHHHTTS-CEEEEC---------------CSS
T ss_pred             EEecCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-------CCCcchhhccCC-CEEEec---------------CCC
Confidence            68999999999999999997 999999986543221       1111222 5567 477887               5  


Q ss_pred             CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH---HHHHHhCCCeEEEEeCCcCCCChHHHH
Q psy7291          77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET---ITKSVMKTNYLISVEGGWPQCGIGSEI  147 (158)
Q Consensus        77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~---l~~~~~~~~~vvvvEe~~~~GG~g~~i  147 (158)
                      .|++||++|+++..|++|++.|+++|++++|||+++++|||++.   +..+++.+.+++++|++.. +|+++.+
T Consensus       555 ~dvtiva~G~~v~~al~Aa~~L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~v~vE~~~~-~g~~~~v  627 (680)
T 1gpu_A          555 PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLAT-TCWGKYA  627 (680)
T ss_dssp             CSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCS-TTGGGTC
T ss_pred             CCEEEEEEcHHHHHHHHHHHHHHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCceEEEeCCcc-ccHHHhc
Confidence            89999999999999999999999999999999999999999984   4445555324499999996 7887654

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=99.81  E-value=8.4e-20  Score=158.50  Aligned_cols=122  Identities=17%  Similarity=0.226  Sum_probs=95.0

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCC--
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGK--   77 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~--   77 (158)
                      |++|+|+.|++.||++|++. ++|++||+++...+.-.   .......+.+..|+ +++++               |.  
T Consensus       515 V~~Pad~~E~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~---~~~~~~~~~~~~G~-~vlr~---------------g~~g  575 (690)
T 3m49_A          515 VIRPADGNESVAAWRLALESTNKPTALVLTRQDLPTLE---GAKDDTYEKVAKGA-YVVSA---------------SKKE  575 (690)
T ss_dssp             EECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEEECCH---HHHTTHHHHHHTSC-EEEEC---------------CSSS
T ss_pred             EEeeCCHHHHHHHHHHHHHcCCCCEEEEeecccCCCCC---ccccccccccCCCe-EEEEe---------------cCCC
Confidence            68999999999999999997 79999997654321100   00000013456776 67887               53  


Q ss_pred             --cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCH--HHHHH-HH-hCCCeEEEEeCCcCCC
Q psy7291          78 --DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDI--ETITK-SV-MKTNYLISVEGGWPQC  141 (158)
Q Consensus        78 --~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~--~~l~~-~~-~~~~~vvvvEe~~~~G  141 (158)
                        |++||++|+++..|++|++.|+++||+++|||+++++|||.  +.+.+ ++ +++++++++|++...|
T Consensus       576 ~~dvtiia~G~~v~~Al~Aa~~L~~~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G  645 (690)
T 3m49_A          576 TADVILLATGSEVSLAVEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFG  645 (690)
T ss_dssp             SCSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTT
T ss_pred             CCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhh
Confidence              99999999999999999999999999999999999999986  34444 44 3578899999999766

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=99.81  E-value=1.4e-19  Score=157.00  Aligned_cols=126  Identities=19%  Similarity=0.265  Sum_probs=100.9

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCc-ccccCceEEEeeccccccCCCcccccCC--
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDF-VLPIGKAKVEKQGEAFYHLDAPVIRVTG--   76 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~vl~~~~~~~~~~~~~~~~~g--   76 (158)
                      |++|+|+.|++.|+++|++. ++|++||+++...+.       .....+ .+..| .+++++.+            .|  
T Consensus       503 V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~-------~~~~~~~~~~~G-a~vl~~~~------------~G~~  562 (675)
T 1itz_A          503 MLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPH-------LPGTSIEGVEKG-GYTISDNS------------TGNK  562 (675)
T ss_dssp             EECCCSHHHHHHHHHHHHHCTTSCEEEEECSSCBCC-------CTTCCHHHHTTS-SEEEEECC------------STTC
T ss_pred             EEECCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCC-------CCCccccccccC-CEEEeccc------------CCCC
Confidence            58999999999999999997 999999987543211       111122 35678 56777610            04  


Q ss_pred             CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH---HHHHHhCC-CeEEEEeCCcCCCChHHHH
Q psy7291          77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET---ITKSVMKT-NYLISVEGGWPQCGIGSEI  147 (158)
Q Consensus        77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~---l~~~~~~~-~~vvvvEe~~~~GG~g~~i  147 (158)
                      .|++||++|+++..|++|++.|+++|++++||++++++|||++.   +..+++.+ +++|++|++.. +|+++.+
T Consensus       563 ~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~G~~~~~  636 (675)
T 1itz_A          563 PDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGST-LGWQKYV  636 (675)
T ss_dssp             CSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCC-TTTHHHH
T ss_pred             CCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCcc-ccHHHhc
Confidence            79999999999999999999999999999999999999999985   55566554 78999999997 8898754

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=99.80  E-value=1.4e-19  Score=155.87  Aligned_cols=122  Identities=14%  Similarity=0.212  Sum_probs=96.7

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCce-EEEeeccccccCCCcccccCCCcE
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKA-KVEKQGEAFYHLDAPVIRVTGKDI   79 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~vl~~~~~~~~~~~~~~~~~g~~~   79 (158)
                      |++|+|+.|++.||++|++.++|+|||+++...   .+..     ......+++. +++++.             +|.|+
T Consensus       470 V~~P~d~~e~~~~l~~A~~~~~Pv~ir~~r~~~---~~~~-----~~~~~~~~~g~~vl~~~-------------~g~dv  528 (632)
T 3l84_A          470 TFRPADGVENVKAWQIALNADIPSAFVLSRQKL---KALN-----EPVFGDVKNGAYLLKES-------------KEAKF  528 (632)
T ss_dssp             EECCSSHHHHHHHHHHHHHCSSCEEEECCSSCB---CCCC-----CCSBCCGGGSSEEEECC-------------TTCSE
T ss_pred             EEecCCHHHHHHHHHHHHhCCCCEEEEEcCCCC---CCCc-----cccccccccccEEEEec-------------CCCCE
Confidence            689999999999999999999999999865432   1100     0112344444 777762             16899


Q ss_pred             EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH--HHHHHhCCCeEEEEeCCcCCCChHH
Q psy7291          80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET--ITKSVMKTNYLISVEGGWPQCGIGS  145 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~--l~~~~~~~~~vvvvEe~~~~GG~g~  145 (158)
                      +||++|+++..|++|++.|+++||+++|||+++++|||++.  +.+.+.+ +.||++|+|.. +|+++
T Consensus       529 tiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~sv~~-~~vv~vE~~~~-~g~~~  594 (632)
T 3l84_A          529 TLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQERLLK-GEVIGVEAAHS-NELYK  594 (632)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHHHHCC-SEEEEECSSCC-GGGGG
T ss_pred             EEEEechHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHHHHhcC-CCEEEEeCChh-hhHHH
Confidence            99999999999999999999999999999999999999974  5666655 68999999985 55654

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=99.80  E-value=1.2e-19  Score=157.37  Aligned_cols=128  Identities=17%  Similarity=0.193  Sum_probs=100.3

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCC-Cc
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTG-KD   78 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g-~~   78 (158)
                      |++|+|++|++.|+++|++. ++|+|||+++..++.- +...  . ....+..|. +++++.             .| .|
T Consensus       490 V~~Pad~~E~~~~l~~a~~~~~~Pv~i~~~r~~~~~~-~~~~--~-~~~~~~~G~-~vl~~~-------------~g~~d  551 (669)
T 2r8o_A          490 TWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQ-ERTE--E-QLANIARGG-YVLKDC-------------AGQPE  551 (669)
T ss_dssp             EECCSSHHHHHHHHHHHHHCSSSCEEEECCSSEECCC-CCCH--H-HHHHGGGSC-EEEECC-------------SSSCS
T ss_pred             EEecCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCC-CCcc--c-hhhhccCCC-EEEecc-------------CCCCC
Confidence            58999999999999999997 8999999876544311 1000  0 001245674 667761             14 89


Q ss_pred             EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH---HHHHHhCC-CeEEEEeCCcCCCChHHHH
Q psy7291          79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET---ITKSVMKT-NYLISVEGGWPQCGIGSEI  147 (158)
Q Consensus        79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~---l~~~~~~~-~~vvvvEe~~~~GG~g~~i  147 (158)
                      ++||++|+++..|++|++.|+++|++++||++++++|||++.   +..+++++ ++++++|++.. +|+++.+
T Consensus       552 v~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~g~~~~~  623 (669)
T 2r8o_A          552 LIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIA-DYWYKYV  623 (669)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEG-GGGHHHH
T ss_pred             EEEEEECHHHHHHHHHHHHHHhcCCCeEEEEeccCCccccchHHHHHHhccccCceEEEEeCCch-hhHHHHh
Confidence            999999999999999999999999999999999999999884   66666664 78999999996 7887643

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=99.79  E-value=1.1e-19  Score=157.63  Aligned_cols=122  Identities=20%  Similarity=0.211  Sum_probs=102.6

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCc-ccccCceEEEeeccccccCCCcccccCC--
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDF-VLPIGKAKVEKQGEAFYHLDAPVIRVTG--   76 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~vl~~~~~~~~~~~~~~~~~g--   76 (158)
                      |++|+|+.|++.|+++|++. ++|++||+++..+..       .....+ .+..| ..++++               |  
T Consensus       490 V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~~-------~~~~~~~~~~~G-a~vl~~---------------g~~  546 (673)
T 1r9j_A          490 VIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEP-------QSGSSIEGVRHG-AYSVVD---------------VPD  546 (673)
T ss_dssp             EECCSSHHHHHHHHHHHHHCTTCCEEEECCSSEECC-------CTTCCHHHHHTS-CEEEEC---------------CTT
T ss_pred             EEeCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCC-------CCCcccccccCC-CEEEee---------------CCC
Confidence            58999999999999999997 899999987653321       111122 35677 678887               5  


Q ss_pred             CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH---HHHHHhCCCeEEEEeCCcCCCChHHHH
Q psy7291          77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET---ITKSVMKTNYLISVEGGWPQCGIGSEI  147 (158)
Q Consensus        77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~---l~~~~~~~~~vvvvEe~~~~GG~g~~i  147 (158)
                      .|++||++|+++..|++|++.|+++ ++++||++++++|||++.   +.++++++.++|++|++.. +|+++.+
T Consensus       547 ~dv~lia~G~~v~~al~Aa~~L~~~-i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~-~g~~~~v  618 (673)
T 1r9j_A          547 LQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVS-FGWEKYS  618 (673)
T ss_dssp             CSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC
T ss_pred             CCEEEEEechhHHHHHHHHHHHHhc-CCEEEEeCCCCchhhcccHHHHHHHhccCCeEEEEeCCCc-cchHHhc
Confidence            8999999999999999999999998 999999999999999985   8889988888999999997 8887654

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=99.79  E-value=2.8e-19  Score=159.09  Aligned_cols=138  Identities=14%  Similarity=0.180  Sum_probs=109.7

Q ss_pred             CcccCCHHHHHHHHHHHH-hC-CCcEEEEecccccccccCCCC--cccCCCcccccCceEEEeeccccccCCCcccccCC
Q psy7291           1 VVSPYNSEDAKGLLKAAI-RD-PDPVVFLENELLYGVQYPMGD--EALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTG   76 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~-~~-~~P~~iR~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g   76 (158)
                      |++|+|+.|+..||++++ +. ++|++||+||++++.+.....  .+....+.+.+|++.+++                |
T Consensus       748 V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~----------------g  811 (933)
T 2jgd_A          748 VCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD----------------P  811 (933)
T ss_dssp             EECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC----------------G
T ss_pred             EEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee----------------c
Confidence            579999999999999985 64 899999999998865432210  111123344566665443                4


Q ss_pred             CcE--EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC---eEEEEeCCcCCCChHHHHHHHH
Q psy7291          77 KDI--TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN---YLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        77 ~~~--~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~---~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      .|+  +|+++|.+...+.+|.+.|.++  +++||++++|+|||.+.|.+++++++   .|+++||+..+||+|+.|++.|
T Consensus       812 ~dV~~vI~~~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l  889 (933)
T 2jgd_A          812 KGVKRVVMCSGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHF  889 (933)
T ss_dssp             GGCCEEEEECTTHHHHHHHHHHHTTCC--SEEEEEECEEESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHH
T ss_pred             CcceEEEEEchHHHHHHHHHHHHcccC--CeEEEEeeccCCCCHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHH
Confidence            567  7888888877777777888654  89999999999999999999999988   8999999999999999999999


Q ss_pred             HcCCC
Q psy7291         152 MEIPY  156 (158)
Q Consensus       152 ~~~~~  156 (158)
                      .+...
T Consensus       890 ~~~~~  894 (933)
T 2jgd_A          890 REVIP  894 (933)
T ss_dssp             HTTSC
T ss_pred             HHhcc
Confidence            88754

>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}

Probab=99.79  E-value=4e-19  Score=123.05  Aligned_cols=76  Identities=24%  Similarity=0.344  Sum_probs=72.2

Q ss_pred             CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291          75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      +|.|++||+||+++..+++|++.|+++|++++++++++++|||.+.+.++++++++|+|+|++. .||+|+.|...+
T Consensus        12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~-~G~l~~~i~~~~   87 (118)
T 3ju3_A           12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNY-TAQAAQMIKLYT   87 (118)
T ss_dssp             SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCC-CCCHHHHHHHHH
T ss_pred             CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCC-CCcHHHHHHHHc
Confidence            4889999999999999999999999999999999999999999999999999999999999987 799999998765

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=99.79  E-value=2.3e-19  Score=156.20  Aligned_cols=128  Identities=18%  Similarity=0.187  Sum_probs=98.2

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCC----
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTG----   76 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g----   76 (158)
                      |++|+|+.|++.||++|++.++|+|||+++...+..    .......+.+..|++ ++++.             +|    
T Consensus       536 V~~Pad~~E~~~~l~~Ai~~~~Pv~ir~~r~~~p~~----~~~~~~~~~i~~G~~-vl~~~-------------~G~~~~  597 (711)
T 3uk1_A          536 VWRPADTVETAVAWTYAVAHQHPSCLIFSRQNLAFN----ARTDAQLANVEKGGY-VLRDW-------------DEEIVA  597 (711)
T ss_dssp             EECCSSHHHHHHHHHHHHHSSSCEEEECCSSEECCC----CCCHHHHHHGGGSSE-EEECC-------------CSSCCS
T ss_pred             EEecCCHHHHHHHHHHHHhcCCCEEEEeeCCCCCCC----CCccccccccCCCeE-EEEec-------------CCCCCC
Confidence            589999999999999999999999999765432210    000000134566775 66641             15    


Q ss_pred             CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH--HHHHHhCC-CeEEEEeCCcCCCChHHHH
Q psy7291          77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET--ITKSVMKT-NYLISVEGGWPQCGIGSEI  147 (158)
Q Consensus        77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~--l~~~~~~~-~~vvvvEe~~~~GG~g~~i  147 (158)
                      .|++||++|+++..|++|++.|+++||+++|||+++++|||++.  +.+.+.+. ..+|++|++. .+|+++.+
T Consensus       598 ~dvtiia~G~~v~~al~Aa~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~-~~g~~~~~  670 (711)
T 3uk1_A          598 RKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGV-TDFWRKYV  670 (711)
T ss_dssp             EEEEEEECTTHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSC-SGGGHHHH
T ss_pred             CCEEEEEecHHHHHHHHHHHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCc-cccHHHHh
Confidence            79999999999999999999999999999999999999999985  45555544 4699999988 46787654

>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}

Probab=99.75  E-value=9.5e-20  Score=149.40  Aligned_cols=82  Identities=21%  Similarity=0.293  Sum_probs=0.0

Q ss_pred             cccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHH
Q psy7291          70 PVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISA  149 (158)
Q Consensus        70 ~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~  149 (158)
                      +.+..+|.|++||++|+++..+++|++.|+++|++++|+++++++|||.+.|.++++++++|+|+||+.  ||++++|.+
T Consensus       285 ~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~i~~~~~~~~~vvvvEe~~--G~l~~~v~~  362 (395)
T 1yd7_A          285 ETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELIERIAERVDKLYVPEMNL--GQLYHLIKE  362 (395)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCCc--hHHHHHHHH
Confidence            344455789999999999999999999999999999999999999999999999999999999999997  999999998


Q ss_pred             HHHc
Q psy7291         150 RIME  153 (158)
Q Consensus       150 ~l~~  153 (158)
                      .+.+
T Consensus       363 ~~~~  366 (395)
T 1yd7_A          363 GANG  366 (395)
T ss_dssp             ----
T ss_pred             HhcC
Confidence            8764

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=99.73  E-value=6.3e-18  Score=146.34  Aligned_cols=123  Identities=18%  Similarity=0.174  Sum_probs=94.4

Q ss_pred             CcccCCHHHHHHHHHHHHh-CCCcEEEEecccccccccCCCCcccCCC---cccccCceEEEeeccccccCCCcccccCC
Q psy7291           1 VVSPYNSEDAKGLLKAAIR-DPDPVVFLENELLYGVQYPMGDEALSKD---FVLPIGKAKVEKQGEAFYHLDAPVIRVTG   76 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~vl~~~~~~~~~~~~~~~~~g   76 (158)
                      |++|+|+.|++.|+++|++ .++|++||+++...    |.   .....   ..+..|+ +++++.             +|
T Consensus       491 V~~Pad~~e~~~~l~~A~~~~~~Pv~ir~~r~~~----p~---~~~~~~~~~~~~~G~-~vl~~~-------------~g  549 (663)
T 3kom_A          491 VWRPADTIETMIAWKEAVKSKDTPSVMVLTRQNL----MP---VVQTQHQVANIARGG-YLVKDN-------------PD  549 (663)
T ss_dssp             EECCCSHHHHHHHHHHHHHCSSCCEEEECCSSEE----CC---CCCCHHHHHHHTTTC-EEEECC-------------TT
T ss_pred             EEeeCCHHHHHHHHHHHHHhCCCCEEEEccCccC----CC---cCccccchhcccCce-EEEEec-------------CC
Confidence            5899999999999999999 69999999764322    11   11111   2345563 566651             16


Q ss_pred             CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH--HHH-HHhCCCeEEEEeCCcCCCChHH
Q psy7291          77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET--ITK-SVMKTNYLISVEGGWPQCGIGS  145 (158)
Q Consensus        77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~--l~~-~~~~~~~vvvvEe~~~~GG~g~  145 (158)
                      .|++||++|+++..|++|++.|+++|++++|||+++++|||.+.  +++ +++....++++|++.. .|+.+
T Consensus       550 ~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~-~g~~~  620 (663)
T 3kom_A          550 AKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQP-DMWYK  620 (663)
T ss_dssp             CSCEEEECTTHHHHHHHHHHHHHHTTCCCEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-GGGGG
T ss_pred             CCEEEEEecHHHHHHHHHHHHHHhcCCCeEEEEcCcCCcccccHHHHHHHhcCCCCeEEEEecCCc-ccHHH
Confidence            79999999999999999999999999999999999999999986  444 4555567999999773 45543

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*

Probab=99.55  E-value=1.7e-15  Score=134.47  Aligned_cols=131  Identities=13%  Similarity=0.163  Sum_probs=99.1

Q ss_pred             CcccCCHHHHHHHHHHHHhC-CCc----EEEEecccc--cccccCCCCcccCCC-cccccCceEEEeeccccccCCCccc
Q psy7291           1 VVSPYNSEDAKGLLKAAIRD-PDP----VVFLENELL--YGVQYPMGDEALSKD-FVLPIGKAKVEKQGEAFYHLDAPVI   72 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~-~~P----~~iR~~~~~--~~~~~~~~~~~~~~~-~~~~~g~~~vl~~~~~~~~~~~~~~   72 (158)
                      |++|+|+.|++.|+++|++. ++|    ++||+++..  +..  |   .+.... ..+ +|+++++++..          
T Consensus       657 V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~~~~~~--p---~~~~~~~~~~-~gga~vlr~g~----------  720 (886)
T 2qtc_A          657 SYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHM--P---AMPEGAEEGI-RKGIYKLETIE----------  720 (886)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCSCCBCC--C---CCCTTCHHHH-HHTCEEEEEEC----------
T ss_pred             EEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCccccCC--C---CCCcchhhhc-cCceEEEEecC----------
Confidence            58999999999999999985 789    999987532  211  1   111111 223 68899998710          


Q ss_pred             ccCCCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHH-------------------HHHHHhCCCeEE
Q psy7291          73 RVTGKDITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIET-------------------ITKSVMKTNYLI  132 (158)
Q Consensus        73 ~~~g~~~~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~-------------------l~~~~~~~~~vv  132 (158)
                       ..+.|++||++|+++..|++|++.|+++ |++++||++++++|||++.                   +.+.+.. ..+|
T Consensus       721 -~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~vV  798 (886)
T 2qtc_A          721 -GSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-APAV  798 (886)
T ss_dssp             -CSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SCEE
T ss_pred             -CCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-CCEE
Confidence             0027999999999999999999999998 9999999999999999874                   4555555 6788


Q ss_pred             EEeCCcCCCChHHHHHHHH
Q psy7291         133 SVEGGWPQCGIGSEISARI  151 (158)
Q Consensus       133 vvEe~~~~GG~g~~i~~~l  151 (158)
                      ++|++..  |+++.+..++
T Consensus       799 a~ed~~~--g~~~~~~~~~  815 (886)
T 2qtc_A          799 ASTDYMK--LFAEQVRTYV  815 (886)
T ss_dssp             EECSSCT--HHHHTTGGGC
T ss_pred             EEEeccc--chHHHHHHHc
Confidence            8898775  6776655444

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*

Probab=99.47  E-value=8.7e-15  Score=128.63  Aligned_cols=136  Identities=10%  Similarity=0.085  Sum_probs=99.7

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEe-cccccccccCCCCcccCCCc---ccccCceEEE---eeccccccCCCcccc
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLE-NELLYGVQYPMGDEALSKDF---VLPIGKAKVE---KQGEAFYHLDAPVIR   73 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~-~~~~~~~~~~~~~~~~~~~~---~~~~g~~~vl---~~~~~~~~~~~~~~~   73 (158)
                      |+.|+|+.|+..+++.|++.++|+++|. +|...+.       +.....   .+..|++.+.   ++..           
T Consensus       595 V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~p~-------~~~~~~a~~~~~~G~~v~~~as~d~~-----------  656 (845)
T 3ahc_A          595 IYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPT-------WVTLDEARAELEAGAAEWKWASNAEN-----------  656 (845)
T ss_dssp             EEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCEEE-------CSCHHHHHHHHHHSEEECTTTCCCSS-----------
T ss_pred             EEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCc-------cCCchhhhhhhcCCeEEEEeeccccc-----------
Confidence            6899999999999999999888777765 3332211       111111   3456766554   2200           


Q ss_pred             cCCCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEEEeccc---cCCCHHHHHHHHhCCCeEEEEeCCcC--CCChHHHH
Q psy7291          74 VTGKDITIVGHSKAV-ETALDAAKILAGQGIDAEVINLRSL---RPLDIETITKSVMKTNYLISVEGGWP--QCGIGSEI  147 (158)
Q Consensus        74 ~~g~~~~ii~~G~~~-~~a~ea~~~L~~~gi~~~vi~~~~l---~Pld~~~l~~~~~~~~~vvvvEe~~~--~GG~g~~i  147 (158)
                      ....|++||++|+.+ .+|++|++.|+++|+++.||++..+   +|.+++.+....+..+.|+++|+|..  .||+|+.|
T Consensus       657 g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV  736 (845)
T 3ahc_A          657 NDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYHSYAQDV  736 (845)
T ss_dssp             TTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEESSCHHHH
T ss_pred             CCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeecCcHHHH
Confidence            014799999999765 5599999999999999999999999   66655433223345578999999987  79999999


Q ss_pred             HHHHHcC
Q psy7291         148 SARIMEI  154 (158)
Q Consensus       148 ~~~l~~~  154 (158)
                      ++.+.++
T Consensus       737 ~ell~~r  743 (845)
T 3ahc_A          737 RGLIYDR  743 (845)
T ss_dssp             HHHTTTS
T ss_pred             HHHHHhC
Confidence            9999887

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=99.46  E-value=5.9e-13  Score=121.72  Aligned_cols=83  Identities=14%  Similarity=0.212  Sum_probs=70.0

Q ss_pred             cccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHH-hCCCeEEEEeCCcCCCC----hH
Q psy7291          70 PVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSV-MKTNYLISVEGGWPQCG----IG  144 (158)
Q Consensus        70 ~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~-~~~~~vvvvEe~~~~GG----~g  144 (158)
                      +.+..++.|++||++|+++..+.+|++.|+++|+++++|++++++|||.+.|.+++ +++++|+|+|++...|.    +.
T Consensus       261 e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L~~~G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~  340 (1231)
T 2c42_A          261 DYVGAPDAERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLY  340 (1231)
T ss_dssp             EEEECTTCSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHH
T ss_pred             eeecCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHH
Confidence            44445589999999999999999999999999999999999999999999999998 67799999999953332    34


Q ss_pred             HHHHHHHH
Q psy7291         145 SEISARIM  152 (158)
Q Consensus       145 ~~i~~~l~  152 (158)
                      .++...+.
T Consensus       341 ~dv~~al~  348 (1231)
T 2c42_A          341 LDVCSAFV  348 (1231)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            56665554

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=90.17  E-value=0.7  Score=29.44  Aligned_cols=73  Identities=14%  Similarity=0.127  Sum_probs=49.8

Q ss_pred             CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh---C--CCeEEEEeCCcCCCChH-HHHHHH
Q psy7291          77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM---K--TNYLISVEGGWPQCGIG-SEISAR  150 (158)
Q Consensus        77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~---~--~~~vvvvEe~~~~GG~g-~~i~~~  150 (158)
                      ..++|.+. +.+..+.+|.+.|++.|+....+|+..    |.+...++.+   +  +-.+|++.++...+|+. .+|.+.
T Consensus         4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~   78 (92)
T 2lqo_A            4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAK   78 (92)
T ss_dssp             SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHH
T ss_pred             CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHH
Confidence            45777665 667788888899999999999999875    4444333332   1  23567776666566764 577777


Q ss_pred             HHcC
Q psy7291         151 IMEI  154 (158)
Q Consensus       151 l~~~  154 (158)
                      |.+.
T Consensus        79 L~el   82 (92)
T 2lqo_A           79 LVKI   82 (92)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7654

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=86.10  E-value=1.8  Score=28.08  Aligned_cols=68  Identities=10%  Similarity=0.039  Sum_probs=45.9

Q ss_pred             CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChHH
Q psy7291          76 GKDITIVGHS----KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIGS  145 (158)
Q Consensus        76 g~~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g~  145 (158)
                      ..+++|.+.|    +.+..+.+|.+.|.+.|+....+++..- |--.+.+.+... .+-..+++... ..||+..
T Consensus        17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi~g~-~iGG~d~   89 (109)
T 3ipz_A           17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYIGGE-FFGGCDI   89 (109)
T ss_dssp             SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEETTE-EEECHHH
T ss_pred             cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCE-EEeCHHH
Confidence            5689999988    4789999999999999999999988641 111123333322 22345667654 4688854

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=84.60  E-value=1.5  Score=29.95  Aligned_cols=67  Identities=16%  Similarity=0.094  Sum_probs=45.3

Q ss_pred             CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChH
Q psy7291          76 GKDITIVGHS----KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIG  144 (158)
Q Consensus        76 g~~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g  144 (158)
                      ..+++|.++|    +.+..+.+|.+.|.+.|+....+++.. .|--.+.+.+... .+-..|++... ..||+.
T Consensus        34 ~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~tvP~VfI~G~-~iGG~d  105 (135)
T 2wci_A           34 ENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGE-LVGGCD  105 (135)
T ss_dssp             HCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTE-EEESHH
T ss_pred             cCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCCCcCEEEECCE-EEEChH
Confidence            3579999998    788899999999999999999999875 2211123333322 12245666644 468884

>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}

Probab=82.72  E-value=12  Score=27.55  Aligned_cols=58  Identities=19%  Similarity=0.215  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291          91 ALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        91 a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      +.++.+.+++.|.++.++++..  .+|.+...+.+..++.||+.=--+ .+++...+..++
T Consensus        49 ~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~i  106 (218)
T 3rpe_A           49 TNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPAW-WMGEPWILKKYI  106 (218)
T ss_dssp             HHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHH
T ss_pred             HHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECChH-hccCCHHHHHHH
Confidence            4455667788899999999985  778887778888888888886655 677766665554

>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*

Probab=80.75  E-value=9.3  Score=30.84  Aligned_cols=73  Identities=15%  Similarity=0.093  Sum_probs=49.1

Q ss_pred             cEEEEEechhHH----HHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291          78 DITIVGHSKAVE----TALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        78 ~~~ii~~G~~~~----~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      +-++|.|+||.+    .|...++.|.++|+.+.++++.-+..-|...+.+-+.+++.|++-=-.+ .|++-..+..+|
T Consensus       266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~-~~~~~p~~~~~l  342 (410)
T 4dik_A          266 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY-EAEIHPLMRFTL  342 (410)
T ss_dssp             TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCT-TSSSCHHHHHHH
T ss_pred             cceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCc-CCcCCHHHHHHH
Confidence            355666777654    4555566788889998888888777777666666666777777766554 577655444443

>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*

Probab=80.24  E-value=7.3  Score=27.33  Aligned_cols=67  Identities=13%  Similarity=0.075  Sum_probs=43.3

Q ss_pred             chhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHH-------------HHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291          85 SKAVETALDAAKILAGQGIDAEVINLRSLRPLDIE-------------TITKSVMKTNYLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        85 G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~-------------~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      |.+-..+..+++.+++.|..+.++++... +.+.-             ...+.+..++.|++.=--+ .|++...+..++
T Consensus        17 g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~~~~~~~lk~~l   94 (200)
T 2a5l_A           17 GATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR-FGNMASPLKYFL   94 (200)
T ss_dssp             SHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECB-TTBCCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChh-ccCccHHHHHHH
Confidence            44445556666778888999999998764 22110             1134456778888776655 578877777776


Q ss_pred             Hc
Q psy7291         152 ME  153 (158)
Q Consensus       152 ~~  153 (158)
                      ..
T Consensus        95 d~   96 (200)
T 2a5l_A           95 DG   96 (200)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=80.17  E-value=3.6  Score=26.79  Aligned_cols=68  Identities=12%  Similarity=0.034  Sum_probs=45.3

Q ss_pred             CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChHH
Q psy7291          76 GKDITIVGHS----KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIGS  145 (158)
Q Consensus        76 g~~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g~  145 (158)
                      ...++|.+-|    +.+..+.+|.+.|.+.|++...+++.. .|--.+.+.+... .+-..+++... ..||+..
T Consensus        15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~tvP~ifi~g~-~iGG~d~   87 (111)
T 3zyw_A           15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPTYPQLYVSGE-LIGGLDI   87 (111)
T ss_dssp             SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTE-EEECHHH
T ss_pred             cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCCCCEEEECCE-EEecHHH
Confidence            5679999887    677889999999999999999998875 2211122333322 23346667654 4688753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d2ozlb1	192	c.36.1.7 (B:0-191) E1-beta subunit of pyruvate deh	4e-16
d1qs0b1	204	c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase	1e-14
d1umdb2	137	c.48.1.2 (B:188-324) Branched-chain alpha-keto aci	3e-12
d1qs0b2	134	c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenas	1e-11
d2bfdb1	203	c.36.1.7 (B:2-204) Branched-chain alpha-keto acid	1e-11
d2bfdb2	138	c.48.1.2 (B:205-342) Branched-chain alpha-keto aci	2e-11
d1w85b1	192	c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta,	2e-11
d1ik6a1	191	c.36.1.7 (A:1-191) E1-beta subunit of pyruvate deh	4e-11
d1w85b2	132	c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-bet	4e-11
d2ozlb2	138	c.48.1.2 (B:192-329) E1-beta subunit of pyruvate d	1e-10
d1ik6a2	135	c.48.1.2 (A:192-326) E1-beta subunit of pyruvate d	6e-10
d2c42a3	157	c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoredu	9e-08
d1umdb1	186	c.36.1.7 (B:2-187) Branched-chain alpha-keto acid	3e-07

>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 4e-16
 Identities = 34/48 (70%), Positives = 40/48 (83%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDF 48
           VVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV +    EA SKDF
Sbjct: 145 VVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDF 192

>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Length = 204

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

 Score = 65.9 bits (160), Expect = 1e-14
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQY------PMGDEALSKDFVLPIG 53
            V P N  DAKGLL A+I   DPV+FLE + LY   +      P+   +      +P G
Sbjct: 146 TVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDG 204

>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 137

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 58.2 bits (140), Expect = 3e-12
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 15/107 (14%)

Query: 47  DFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAE 106
           D+ LPIGKA + ++G               KD+T++ +   +   L AA  LA  G+ AE
Sbjct: 1   DYTLPIGKAALRREG---------------KDLTLICYGTVMPEVLQAAAELAKAGVSAE 45

Query: 107 VINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           V++LR+L P D E +  SV KT  ++ V          SE++A I E
Sbjct: 46  VLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAE 92

>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Length = 134

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: 2-oxoisovalerate dehydrogenase E1b, C-domain
species: Pseudomonas putida [TaxId: 303]

 Score = 56.6 bits (136), Expect = 1e-11
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 18/110 (16%)

Query: 48  FVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEV 107
           + +P+ KA + + G                D++++ +   V  A          G+DAEV
Sbjct: 2   YTVPLDKAAITRPG---------------NDVSVLTYGTTVYVAQ---VAAEESGVDAEV 43

Query: 108 INLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPYS 157
           I+LRSL PLD++TI +SV KT   + V      CG G+E+ + + E  + 
Sbjct: 44  IDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFH 93

>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 203

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 1e-11
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYG 34
           VV P +   AKGLL + I D +P +F E ++LY 
Sbjct: 161 VVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 194

>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 2e-11
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 16/106 (15%)

Query: 48  FVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAK-ILAGQGIDAE 106
           + +P+ +A+V ++               G D+T+V     V    + A       G+  E
Sbjct: 2   YNIPLSQAEVIQE---------------GSDVTLVAWGTQVHVIREVASMAKEKLGVSCE 46

Query: 107 VINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIM 152
           VI+LR++ P D++TI KSV+KT  L+         G  SEIS+ + 
Sbjct: 47  VIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQ 92

>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 57.0 bits (137), Expect = 2e-11
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPI 52
           VV P    DAKGLL +AIRD DPV+FLE+  LY        E    ++ +PI
Sbjct: 144 VVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY---RSFRQEVPEGEYTIPI 192

>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 56.3 bits (135), Expect = 4e-11
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query: 1   VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLY 33
           VV P    +AKGLLKAAIR  DPVVFLE ++LY
Sbjct: 149 VVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 181

>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 132

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 55.2 bits (132), Expect = 4e-11
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 15/104 (14%)

Query: 53  GKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112
           GKA ++++G               KDITI+ +   V  +L AA  L  +GI AEV++LR+
Sbjct: 1   GKADIKREG---------------KDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 45

Query: 113 LRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156
           ++PLDIETI  SV KT   I V+    Q GI + + A I E   
Sbjct: 46  VQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAI 89

>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 1e-10
 Identities = 53/103 (51%), Positives = 74/103 (71%), Gaps = 15/103 (14%)

Query: 50  LPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVIN 109
           +PIGKAK+E+QG                 IT+V HS+ V   L+AA +L+ +G++ EVIN
Sbjct: 2   IPIGKAKIERQG---------------THITVVSHSRPVGHCLEAAAVLSKEGVECEVIN 46

Query: 110 LRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIM 152
           +R++RP+D+ETI  SVMKTN+L++VEGGWPQ G+G+EI ARIM
Sbjct: 47  MRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIM 89

>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 135

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 52.1 bits (124), Expect = 6e-10
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 18/107 (16%)

Query: 47  DFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAE 106
           D+V+ IGKA+V ++               G D+T+V +   V  AL+AA+ +       E
Sbjct: 1   DYVVEIGKARVARE---------------GDDVTLVTYGAVVHKALEAAERV---KASVE 42

Query: 107 VINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
           V++L++L PLD +T+ KSV KT  LI         G+G+E+ A + E
Sbjct: 43  VVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAE 89

>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Length = 157

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
species: Desulfovibrio africanus [TaxId: 873]

 Score = 46.5 bits (110), Expect = 9e-08
 Identities = 15/70 (21%), Positives = 28/70 (40%)

Query: 78  DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGG 137
           +  IV    + ET  +    LA +G    +I +R  RP   E    ++  +  +I+V   
Sbjct: 12  ERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDR 71

Query: 138 WPQCGIGSEI 147
             + G   + 
Sbjct: 72  TKEPGAPGDP 81

>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Thermus thermophilus [TaxId: 274]

 Score = 46.0 bits (108), Expect = 3e-07
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 3   SPYNSEDAKGLLKAAIRDPDPVVFLENELLYG 34
           +     DAKGLLKAAIRD DPVVFLE + LY 
Sbjct: 146 AVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYR 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1umdb2	137	Branched-chain alpha-keto acid dehydrogenase {Ther	99.92
d2bfdb2	138	Branched-chain alpha-keto acid dehydrogenase {Huma	99.92
d2ozlb2	138	E1-beta subunit of pyruvate dehydrogenase, C-domai	99.91
d1w85b2	132	Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d	99.9
d1ik6a2	135	E1-beta subunit of pyruvate dehydrogenase, C-domai	99.9
d1qs0b2	134	2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu	99.89
d2c42a3	157	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	99.66
d1gpua3	146	Transketolase (TK), C-domain {Baker's yeast (Sacch	99.32
d2r8oa3	136	Transketolase (TK), C-domain {Escherichia coli [Ta	99.26
d1r9ja3	143	Transketolase (TK), C-domain {Leishmania mexicana	98.8
d1itza3	136	Transketolase (TK), C-domain {Maize (Zea mays) [Ta	98.7
d1qs0b1	204	2-oxoisovalerate dehydrogenase (E1B), Pyr module {	98.08
d2ieaa3	186	Pyruvate dehydrogenase E1 component, C-domain {Esc	96.65
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	90.8
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	89.91
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	86.67
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	84.76
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	84.58
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	84.14
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	82.82
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	81.44
d1f4pa_	147	Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}	80.99
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	80.22

>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.3e-25  Score=157.95  Aligned_cols=93  Identities=38%  Similarity=0.548  Sum_probs=89.2

Q ss_pred             cccccCceEEEeeccccccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC
Q psy7291          48 FVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK  127 (158)
Q Consensus        48 ~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~  127 (158)
                      |.+++||++++++               |.|++|||+|.|+..|++|++.|+++|++++|||++|++|||.+.+.+++++
T Consensus         2 Y~~~iGk~~v~r~---------------G~dvtiis~G~~~~~al~aa~~L~~~gi~~~vid~~~lkPlD~~~i~~sv~k   66 (137)
T d1umdb2           2 YTLPIGKAALRRE---------------GKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAK   66 (137)
T ss_dssp             CCCCTTCCEEEEC---------------CSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCEEETCCHHHHHHHHHH
T ss_pred             ceEeCCEEEEEEe---------------CCCEEEEEcchhhhhhhhhhhcccccCcceEEEeecccCCcchhhhhHHHhc
Confidence            5678999999999               9999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291         128 TNYLISVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus       128 ~~~vvvvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      +++++|+|||...||+|+.|++.+++++
T Consensus        67 t~~vv~veE~~~~gg~g~~v~~~l~e~~   94 (137)
T d1umdb2          67 TGRVVLVSDAPRHASFVSEVAATIAEDL   94 (137)
T ss_dssp             HSCEEEEEEEESTTCHHHHHHHHHHHHH
T ss_pred             cCcEEEEEcccccchhHHHHHHHHHHhh
Confidence            9999999999999999999999998764

>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Branched-chain alpha-keto acid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-25  Score=157.26  Aligned_cols=94  Identities=33%  Similarity=0.535  Sum_probs=89.0

Q ss_pred             cccccCceEEEeeccccccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHHHHHHh
Q psy7291          48 FVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIETITKSVM  126 (158)
Q Consensus        48 ~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l~~~~~  126 (158)
                      |.+++||++++++               |.|++|||||.|+..|++|+++|+++ |++++|+|+++++|||.+.|.++++
T Consensus         2 y~i~iGk~~v~~~---------------G~DitIis~G~~~~~al~aa~~L~~~~gi~~~vid~~~l~PlD~~~i~~s~~   66 (138)
T d2bfdb2           2 YNIPLSQAEVIQE---------------GSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVI   66 (138)
T ss_dssp             CCCCSSCCEEEEC---------------CSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECCEEESCCHHHHHHHHH
T ss_pred             eeEeCCEEEEEEe---------------CCeEEEEEChHHHHHHHHHHHHHHhcCCcceeeeeeccccccchHHHHHHhc
Confidence            5678999999999               99999999999999999999999765 9999999999999999999999999


Q ss_pred             CCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291         127 KTNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus       127 ~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      ++++++|+|||...||+|++|++.++++++
T Consensus        67 kt~~livvee~~~~gG~gs~i~~~l~~~~~   96 (138)
T d2bfdb2          67 KTGRLLISHEAPLTGGFASEISSTVQEECF   96 (138)
T ss_dssp             HHSCEEEEEEEESTTCHHHHHHHHHHHHHG
T ss_pred             ccCeEEEecCccccccHHHHHHHHHHHhhH
Confidence            999999999999999999999999998753

>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-24  Score=151.99  Aligned_cols=92  Identities=60%  Similarity=1.022  Sum_probs=88.2

Q ss_pred             cccCceEEEeeccccccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC
Q psy7291          50 LPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN  129 (158)
Q Consensus        50 ~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~  129 (158)
                      +++||++++++               |.|++|||||+|+..|++|++.|+++|++++|+|+++++|||.+.+.+++++++
T Consensus         2 ipiGK~~i~~~---------------G~ditiis~G~~~~~al~aa~~L~~~gi~~~vid~~~lkPld~~~i~~~~~k~~   66 (138)
T d2ozlb2           2 IPIGKAKIERQ---------------GTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTN   66 (138)
T ss_dssp             CCTTCCEEEEC---------------CSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECCEEETCCHHHHHHHHHHHS
T ss_pred             ccCCeeEEEEe---------------CCCEEEEEccHHHHhHHHHhhhhcccCcceEEEEeccccCCcchhhhhhhcccc
Confidence            46899999999               999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291         130 YLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus       130 ~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      +++|+|||...||+|+++++.+++++.
T Consensus        67 ~iivvee~~~~gG~gs~i~~~l~e~~~   93 (138)
T d2ozlb2          67 HLVTVEGGWPQFGVGAEICARIMEGPA   93 (138)
T ss_dssp             CEEEECSSCSTTCHHHHHHHHHHHSTT
T ss_pred             ceEEeecccccchHHHHHHHHHHhhhh
Confidence            999999999999999999999998753

>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.90  E-value=1.7e-24  Score=151.18  Aligned_cols=88  Identities=45%  Similarity=0.630  Sum_probs=84.9

Q ss_pred             CceEEEeeccccccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEE
Q psy7291          53 GKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLI  132 (158)
Q Consensus        53 g~~~vl~~~~~~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vv  132 (158)
                      ||++++++               |.|++|||||.|+..|++|++.|+++|++++|||++|++|||.+.+.+.++++++++
T Consensus         1 Gk~~v~~~---------------G~dvtIis~G~~~~~al~Aa~~L~~~gi~~~vid~~~lkPlD~~~i~~~~~kt~~vi   65 (132)
T d1w85b2           1 GKADIKRE---------------GKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGRAI   65 (132)
T ss_dssp             TCCEEEEC---------------CSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEEESCCHHHHHHHHHHHSCEE
T ss_pred             CceEEEEe---------------CCCEEEEEChHHHHHHHHHHHHHHhcCCCeEEEeeeccCCcchhhhhHHHhccCCee
Confidence            78999999               999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCcCCCChHHHHHHHHHcCC
Q psy7291         133 SVEGGWPQCGIGSEISARIMEIP  155 (158)
Q Consensus       133 vvEe~~~~GG~g~~i~~~l~~~~  155 (158)
                      |+|||...||+|++|++.+++++
T Consensus        66 vveE~~~~gG~gs~i~~~l~~~~   88 (132)
T d1w85b2          66 VVQEAQRQAGIAANVVAEINERA   88 (132)
T ss_dssp             EEEEEETTSSSHHHHHHHHHHHH
T ss_pred             EEecccccccHHHHHHHHHHHhc
Confidence            99999999999999999998864

>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: E1-beta subunit of pyruvate dehydrogenase, C-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.90  E-value=3.5e-24  Score=150.16  Aligned_cols=91  Identities=38%  Similarity=0.591  Sum_probs=85.6

Q ss_pred             cccccCceEEEeeccccccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC
Q psy7291          48 FVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK  127 (158)
Q Consensus        48 ~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~  127 (158)
                      |.+++||++++++               |+|++|||+|+|+..|++|+++|   +++++|||++|++|||.+.|.+++++
T Consensus         2 Y~~~~Gk~~ilr~---------------G~dvtIi~~G~mv~~al~aa~~l---~~~~~vid~~~lkPlD~~~i~~~~~k   63 (135)
T d1ik6a2           2 YVVEIGKARVARE---------------GDDVTLVTYGAVVHKALEAAERV---KASVEVVDLQTLNPLDFDTVLKSVSK   63 (135)
T ss_dssp             CCCCTTCCEEEEC---------------CSSEEEEECTTHHHHHHHHHHTS---SSCEEEEECCEEETTCHHHHHHHHHH
T ss_pred             ceeeCCEEEEEEe---------------CCcEEEEEeccchHHHHHHHHhh---ccchhhhccccccCCChHHHhHHHhc
Confidence            5678999999999               99999999999999999999887   45899999999999999999999999


Q ss_pred             CCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291         128 TNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus       128 ~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      +++++|+|||...||+|++|+++++++++
T Consensus        64 ~~~vvvvEe~~~~gG~gs~i~~~l~e~~~   92 (135)
T d1ik6a2          64 TGRLIIAHDSPKTGGLGAEVRALVAEKAL   92 (135)
T ss_dssp             HCCEEEEEEEESTTSHHHHHHHHHHHHSG
T ss_pred             cCCcEEEecCccccchHHHHHHHHHHhhh
Confidence            99999999999999999999999998864

>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
domain: 2-oxoisovalerate dehydrogenase E1b, C-domain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=2.5e-23  Score=145.61  Aligned_cols=91  Identities=37%  Similarity=0.613  Sum_probs=85.0

Q ss_pred             cccccCceEEEeeccccccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC
Q psy7291          48 FVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK  127 (158)
Q Consensus        48 ~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~  127 (158)
                      |.+++||++++++               |.|++|||||.|+..|++|+++   +|++++|+|+++++|||.+.+.+++++
T Consensus         2 y~~piGk~~v~~~---------------G~Ditiis~G~~v~~a~~a~~~---~gi~~~vidl~~l~PlD~~~i~~~~~k   63 (134)
T d1qs0b2           2 YTVPLDKAAITRP---------------GNDVSVLTYGTTVYVAQVAAEE---SGVDAEVIDLRSLWPLDLDTIVESVKK   63 (134)
T ss_dssp             CCCCTTCCCEEEC---------------CSSCEEEECTTHHHHHHHHHHH---HCCCCEEEECSEEESCCHHHHHHHHHH
T ss_pred             eeecCCEEEEEEe---------------CCCEEEEEeehHHHHHHHHHhh---cCcchhheeccccCCcchhhHHHHHhC
Confidence            3567899999999               9999999999999999999864   599999999999999999999999999


Q ss_pred             CCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291         128 TNYLISVEGGWPQCGIGSEISARIMEIPY  156 (158)
Q Consensus       128 ~~~vvvvEe~~~~GG~g~~i~~~l~~~~~  156 (158)
                      +++++|+|||...||+|++|++.++++++
T Consensus        64 t~~vi~vEe~~~~gG~gs~i~~~l~e~~~   92 (134)
T d1qs0b2          64 TGRCVVVHEATRTCGFGAELVSLVQEHCF   92 (134)
T ss_dssp             HSCEEEEESSCSTTSTHHHHHHHHHHHSS
T ss_pred             CceEEEEecCccccchHHHHHHHHHHhhh
Confidence            99999999999999999999999998754

>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
species: Desulfovibrio africanus [TaxId: 873]

Probab=99.66  E-value=1e-16  Score=114.26  Aligned_cols=84  Identities=17%  Similarity=0.236  Sum_probs=70.4

Q ss_pred             cccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHH-hCCCeEEEEeCCcCCCChH----HH
Q psy7291          72 IRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSV-MKTNYLISVEGGWPQCGIG----SE  146 (158)
Q Consensus        72 ~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~-~~~~~vvvvEe~~~~GG~g----~~  146 (158)
                      |..+++|++||++|+++..+++|++.|+++|++++++++++++|||.+.+.+.+ +..+.|+|+|++...|+.|    .+
T Consensus         6 yg~~dAd~viV~~Gs~~~~a~~A~~~L~~~Gi~vgvi~~r~lrPf~~~~l~~~l~k~~k~V~Vle~~~~~G~~g~~L~~d   85 (157)
T d2c42a3           6 VGAPDAERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLD   85 (157)
T ss_dssp             EECTTCSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHH
T ss_pred             eCCCCCCEEEEEeCHhHHHHHHHHHHHHhhcccccEEEeEEEEeCCHHHHHHHHhccCCEEEEEeCCcCCCCCchHHHHH
Confidence            334478999999999999999999999999999999999999999999887776 5567777888888777654    56


Q ss_pred             HHHHHHcCC
Q psy7291         147 ISARIMEIP  155 (158)
Q Consensus       147 i~~~l~~~~  155 (158)
                      +.+.|.+.+
T Consensus        86 v~saL~~~~   94 (157)
T d2c42a3          86 VCSAFVERG   94 (157)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            777776544

>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=2.4e-12  Score=90.20  Aligned_cols=66  Identities=27%  Similarity=0.341  Sum_probs=59.4

Q ss_pred             CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCC---CHHHHHHHHhCCCeEEEEeCCcCCC
Q psy7291          76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPL---DIETITKSVMKTNYLISVEGGWPQC  141 (158)
Q Consensus        76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pl---d~~~l~~~~~~~~~vvvvEe~~~~G  141 (158)
                      +.|++||++|+++..|++|++.|+++||+++||++++++||   |.+....++.....++++|.+...|
T Consensus        20 ~pdvtiiAsGsev~~AleAa~~L~~~GI~v~Vvs~ps~~~~~~q~~~~~~~~~~~~~~~v~iEa~~~~g   88 (146)
T d1gpua3          20 NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLATTC   88 (146)
T ss_dssp             SCSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCSTT
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHHHhhccCccEEEeehhhHHHhhhHHHhhhhcccccceeeEEeccccc
Confidence            45999999999999999999999999999999999999999   6667777777778899999988654

>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.9e-13  Score=94.75  Aligned_cols=78  Identities=15%  Similarity=0.118  Sum_probs=62.9

Q ss_pred             CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcC
Q psy7291          76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEI  154 (158)
Q Consensus        76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~  154 (158)
                      +.|++||++|+++..|++|++.|+++|++++||++++++|||++......+ ...+.+.+++...||++..+..++..+
T Consensus        22 ~~dv~iiasGs~v~~aleAa~~L~~~gI~~~Vi~~~~~k~l~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (136)
T d2r8oa3          22 QPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRES-VLPKAVTARVAVEAGIADYWYKYVGLN   99 (136)
T ss_dssp             SCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEECSCHHHHHTSCHHHHHH-HSCTTCCCEEEEEEEEGGGGHHHHTTS
T ss_pred             CCCEEEEeeccchHHHHHHHHHHHhcCCCceEeechhhhHHHHhHHHHHHH-hcccccccceeEEecCcchHHHhhcCC
Confidence            459999999999999999999999999999999999999998876543332 233445566777788888777777654

>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=98.80  E-value=1.4e-08  Score=70.37  Aligned_cols=65  Identities=23%  Similarity=0.228  Sum_probs=54.8

Q ss_pred             CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCC---HHHHHHHHhCCCeEEEEeCCcCCC
Q psy7291          76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLD---IETITKSVMKTNYLISVEGGWPQC  141 (158)
Q Consensus        76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld---~~~l~~~~~~~~~vvvvEe~~~~G  141 (158)
                      +.|++||++|+++..|++|++.|+++ |++.||+++++.+|+   .+....++.....++++|.+...|
T Consensus        18 ~~dvtiiAtGseV~~AleAA~~L~~~-I~~~VVS~ps~~~~~~~~~~y~~~vl~~~~~~v~vEa~~~~g   85 (143)
T d1r9ja3          18 DLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFG   85 (143)
T ss_dssp             TCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTT
T ss_pred             CCCEEEEEccHHHHHHHHHHHHHHhh-cceeEeeeeehhhhhhhhHHHHHHhCCCcccceeeEeecccc
Confidence            67899999999999999999999875 999999998765554   455667777777899999988765

>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.70  E-value=1.9e-08  Score=68.97  Aligned_cols=68  Identities=24%  Similarity=0.280  Sum_probs=53.2

Q ss_pred             CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHH---HHHHHHh-CCCeEEEEeCCcCCCChH
Q psy7291          76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIE---TITKSVM-KTNYLISVEGGWPQCGIG  144 (158)
Q Consensus        76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~---~l~~~~~-~~~~vvvvEe~~~~GG~g  144 (158)
                      ..|++|+++|+++..|++|++.|+++|+++.||+++++.+|+.+   ....++. .+..++.+|.+.. -||.
T Consensus        23 ~~dv~liasGs~v~~al~Aa~~L~~~gi~~~Vvs~p~~~~~~~~~~~~~~~i~~~~~~~~~~ie~~~~-~~w~   94 (136)
T d1itza3          23 KPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGST-LGWQ   94 (136)
T ss_dssp             CCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCC-TTTH
T ss_pred             CCCEEEEEecHHHHHHHHHHHHHHhccccccccccccchhhhhhhhhhhhccccccccccchhhhhhh-hhHH
Confidence            35899999999999999999999999999999999998887543   2333333 3456788998774 3443

>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

Probab=98.08  E-value=2.3e-06  Score=62.20  Aligned_cols=38  Identities=50%  Similarity=0.707  Sum_probs=35.1

Q ss_pred             CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccC
Q psy7291           1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYP   38 (158)
Q Consensus         1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~   38 (158)
                      |++|+|+.|++.|++.|++.++|++|.++|.+|..+++
T Consensus       146 Vv~Ps~~~da~~ll~~a~~~~~Pvi~~e~k~ly~~~~~  183 (204)
T d1qs0b1         146 TVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFD  183 (204)
T ss_dssp             EECCCSHHHHHHHHHHHHHSSSCEEEEEEGGGSSSCCC
T ss_pred             EEeeCCHHHHHHHHHHHHhCCCcEEEEeeHHHhCCCcc
Confidence            68999999999999999999999999999999987654

>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Pyruvate dehydrogenase E1 component, C-domain
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00046  Score=48.92  Aligned_cols=44  Identities=16%  Similarity=0.354  Sum_probs=38.6

Q ss_pred             CCcEEEEEechhHHHHHHHHH-HHHhCCCcEEEEEeccccCCCHH
Q psy7291          76 GKDITIVGHSKAVETALDAAK-ILAGQGIDAEVINLRSLRPLDIE  119 (158)
Q Consensus        76 g~~~~ii~~G~~~~~a~ea~~-~L~~~gi~~~vi~~~~l~Pld~~  119 (158)
                      +.++.|+++|+.+..+++|++ .|++.|+++.|+++++..=|+.+
T Consensus        23 ~p~v~LlaSGsev~~aleAa~~ll~~~gi~~~VvS~pS~~~l~~~   67 (186)
T d2ieaa3          23 KGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARD   67 (186)
T ss_dssp             SEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHH
T ss_pred             CceEEEEEehHHHHHHHHHHHHHHHhcCCCceEEEecCHHHHHHh
Confidence            468999999999999999988 56777999999999998777654

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.80  E-value=0.58  Score=30.27  Aligned_cols=73  Identities=14%  Similarity=0.080  Sum_probs=47.4

Q ss_pred             cEEEEEechhHHHHHHH----HHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291          78 DITIVGHSKAVETALDA----AKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        78 ~~~ii~~G~~~~~a~ea----~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      .-++|-|||+.....+.    .+.|.+.|+.+.++++.....-+...+..-+..++.+++.--.+ .|+....+..++
T Consensus         4 ~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iiigspt~-~~~~~~~~~~~l   80 (148)
T d1vmea1           4 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY-EAEIHPLMRFTL   80 (148)
T ss_dssp             TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECEE-TTEECHHHHHHH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeEEEeccc-CCccCchHHHHH
Confidence            34556666665554444    45667789999999988877766665555566777777766555 466555554443

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.91  E-value=0.21  Score=31.50  Aligned_cols=46  Identities=17%  Similarity=0.169  Sum_probs=39.4

Q ss_pred             EEec-hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291          82 VGHS-KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT  128 (158)
Q Consensus        82 i~~G-~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~  128 (158)
                      +=|| +.++.+.+|.+-|++.|+++.+++..- .|++.+.|.++++..
T Consensus         3 ~iY~~p~Cs~srka~~~L~~~~i~~~~idy~k-~pls~~eL~~ll~~~   49 (114)
T d1rw1a_           3 VLYGIKACDTMKKARTWLDEHKVAYDFHDYKA-VGIDREHLRRWCAEH   49 (114)
T ss_dssp             EEEECSSCHHHHHHHHHHHHTTCCEEEEEHHH-HCCCHHHHHHHHHHH
T ss_pred             EEEECCCChHHHHHHHHHHHcCCCeEEEEccc-cCCCHHHHHHHHHhc
Confidence            3455 678899999999999999999999987 899999998888754

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=86.67  E-value=1.1  Score=28.00  Aligned_cols=42  Identities=24%  Similarity=0.227  Sum_probs=37.6

Q ss_pred             hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291          86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT  128 (158)
Q Consensus        86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~  128 (158)
                      +.+..+.+|.+-|++.|+++.+++..- .|++.+.|.++++..
T Consensus         8 ~~C~~~rka~~~L~~~~i~~~~~d~~~-~p~s~~eL~~ll~~~   49 (114)
T d1z3ea1           8 PSCTSCRKARAWLEEHEIPFVERNIFS-EPLSIDEIKQILRMT   49 (114)
T ss_dssp             TTCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHCCCCeEEEeeec-cCCCHHHHHHHHHHh
Confidence            567889999999999999999999987 899999999998754

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=84.76  E-value=1  Score=26.15  Aligned_cols=70  Identities=14%  Similarity=0.154  Sum_probs=43.8

Q ss_pred             cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291          78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      +++|.+. +.+..+.+|.+.|++.|+....+++.. .|--.+.+.+.-. .+-..+++.+.. .||+.+ +.+..
T Consensus         2 ~I~iys~-~~Cp~C~~ak~~L~~~~i~y~~~di~~-~~~~~~~~~~~~g~~tvP~i~i~~~~-IGG~~e-l~~l~   72 (82)
T d1fova_           2 NVEIYTK-ETCPYCHRAKALLSSKGVSFQELPIDG-NAAKREEMIKRSGRTTVPQIFIDAQH-IGGYDD-LYALD   72 (82)
T ss_dssp             CEEEEEC-SSCHHHHHHHHHHHHHTCCCEEEECTT-CSHHHHHHHHHHSSCCSCEEEETTEE-EESHHH-HHHHH
T ss_pred             cEEEEeC-CCCHhHHHHHHHHHHcCCCeEEEeccc-hHHHHHHHHHHhCCCCCCeEEECCEE-EecHHH-HHHHH
Confidence            4666655 567788888888999999999999875 2222233433322 232566676554 699854 44433

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.58  E-value=1.9  Score=29.73  Aligned_cols=75  Identities=19%  Similarity=0.123  Sum_probs=48.7

Q ss_pred             CCcEEEEEech------hHHHHHHHHHHHHhCCCcEEEEEeccccC---------------------------------C
Q psy7291          76 GKDITIVGHSK------AVETALDAAKILAGQGIDAEVINLRSLRP---------------------------------L  116 (158)
Q Consensus        76 g~~~~ii~~G~------~~~~a~ea~~~L~~~gi~~~vi~~~~l~P---------------------------------l  116 (158)
                      |.+++||. |+      ....+..+++.++++|.+++++|+.-..+                                 .
T Consensus         2 ~mKiLiI~-ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (230)
T d2qwxa1           2 GKKVLIVY-AHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSL   80 (230)
T ss_dssp             CCEEEEEE-CCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCB
T ss_pred             CCEEEEEE-eCCCCccHHHHHHHHHHHHHHhCCCEEEEEEccccCCcccchHHHhhhccCchhhhcchhhhhhhhhcccc
Confidence            55677764 43      23344456778888999999999854321                                 1


Q ss_pred             CH--HHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHH
Q psy7291         117 DI--ETITKSVMKTNYLISVEGGWPQCGIGSEISARIM  152 (158)
Q Consensus       117 d~--~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~  152 (158)
                      +.  ..+.+.+..++.||++=--+ .+|+.+.+..++-
T Consensus        81 ~~di~~~~~~l~~AD~iv~~~P~y-~~~~pa~lK~~iD  117 (230)
T d2qwxa1          81 ASDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMD  117 (230)
T ss_dssp             CHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCCEEEEEeCcc-cccCCHHHHHHHH
Confidence            11  23345566778888877666 6888888877764

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=84.14  E-value=3.6  Score=26.22  Aligned_cols=64  Identities=11%  Similarity=0.102  Sum_probs=38.3

Q ss_pred             echhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291          84 HSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARI  151 (158)
Q Consensus        84 ~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l  151 (158)
                      ||++-..|...++.|.++|+.+.++++...   +.+.+...+..++.|++.--.+ .|++...+..++
T Consensus        13 tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~---~~~~~~~~l~~~d~vi~Gspt~-~~~~~~~~~~~l   76 (152)
T d1e5da1          13 WHSTEKMARVLAESFRDEGCTVKLMWCKAC---HHSQIMSEISDAGAVIVGSPTH-NNGILPYVAGTL   76 (152)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCEEEEEETTTS---CHHHHHHHHHTCSEEEEECCCB-TTBCCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhCCCEEEEeecccC---ChhhhccchhhCCEEEEecccc-CCccCchhHHHH
Confidence            344444555556677788999998887642   3333444455666666665555 466655555544

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=82.82  E-value=1.4  Score=27.42  Aligned_cols=73  Identities=11%  Similarity=0.118  Sum_probs=48.7

Q ss_pred             CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec------------cccCC-CHHHHHHHHhCC-CeEEEEeCCcCCC
Q psy7291          76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR------------SLRPL-DIETITKSVMKT-NYLISVEGGWPQC  141 (158)
Q Consensus        76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~------------~l~Pl-d~~~l~~~~~~~-~~vvvvEe~~~~G  141 (158)
                      +.++.|++-|........|+..|   |+++.+++..            .+.++ |.+.+.+++... -.++|+|--... 
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~l---G~~v~v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~~~~DviT~E~EnI~-   86 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRL---GVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIA-   86 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTT---TCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCSC-
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHC---CCEEEEEcCCCCCchhhcCCeEEECCCCCHHHHHHHHHhhCCceEEEEecCcC-
Confidence            46799999998888777776655   8999998732            22344 567788887654 358899964432 


Q ss_pred             ChHHHHHHHHHcCC
Q psy7291         142 GIGSEISARIMEIP  155 (158)
Q Consensus       142 G~g~~i~~~l~~~~  155 (158)
                         ....+.|.+.|
T Consensus        87 ---~~~L~~le~~g   97 (111)
T d1kjqa2          87 ---TDMLIQLEEEG   97 (111)
T ss_dssp             ---HHHHHHHHHTT
T ss_pred             ---HHHHHHHHHCC
Confidence               34455554444

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=81.44  E-value=4.6  Score=25.55  Aligned_cols=59  Identities=12%  Similarity=0.112  Sum_probs=32.9

Q ss_pred             chhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHH
Q psy7291          85 SKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEI  147 (158)
Q Consensus        85 G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i  147 (158)
                      |++-..|...++.+++.|+.+.++++...   +.+.+...+..++.|++-=-.+ .|++...+
T Consensus        14 GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~d~ii~Gspt~-~g~~~~~~   72 (149)
T d1ycga1          14 LSTEKMAHALMDGLVAGGCEVKLFKLSVS---DRNDVIKEILDARAVLVGSPTI-NNDILPVV   72 (149)
T ss_dssp             SHHHHHHHHHHHHHHHTTCEEEEEEGGGS---CHHHHHHHHHHCSEEEEECCCB-TTBCCGGG
T ss_pred             cHHHHHHHHHHHHHHhcCCeeEEEEcccc---chHHHhhhhhhCCeEEEEeecc-cCCCCHHH
Confidence            44444455556677788999999887643   2233334444555555554433 45554333

>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=80.99  E-value=0.76  Score=29.90  Aligned_cols=37  Identities=14%  Similarity=0.122  Sum_probs=26.3

Q ss_pred             EEEEechhHHHHHHHHH----HHHhCCCcEEEEEeccccCC
Q psy7291          80 TIVGHSKAVETALDAAK----ILAGQGIDAEVINLRSLRPL  116 (158)
Q Consensus        80 ~ii~~G~~~~~a~ea~~----~L~~~gi~~~vi~~~~l~Pl  116 (158)
                      ++|-|||+...+.+.++    .|.+.|+++.++++..+.|.
T Consensus         3 v~I~Y~S~tG~te~~A~~i~~~l~~~g~~v~~~~~~~~~~~   43 (147)
T d1f4pa_           3 ALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAG   43 (147)
T ss_dssp             EEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCST
T ss_pred             EEEEEECCChhHHHHHHHHHHHHHHCCCeEEEEeccccchh
Confidence            45677777766665554    55667999999988877664

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=80.22  E-value=0.61  Score=26.85  Aligned_cols=63  Identities=13%  Similarity=0.171  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH---HHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHc
Q psy7291          86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIET---ITKSVMKTNYLISVEGGWPQCGIGSEISARIME  153 (158)
Q Consensus        86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~---l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~  153 (158)
                      +.+..+.+|.+.|.+.|++...+++..    |.+.   +...-.+.-.++++.+.. .|||-......|..
T Consensus         9 ~~C~~C~~ak~~L~~~~i~y~~~~i~~----~~~~~~~~~~~g~~tvP~i~i~~~~-i~Gf~~d~i~~L~~   74 (76)
T d1h75a_           9 NDCVQCHATKRAMENRGFDFEMINVDR----VPEAAEALRAQGFRQLPVVIAGDLS-WSGFRPDMINRLHP   74 (76)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHTTCCSSCEEEETTEE-EESCCHHHHGGGSC
T ss_pred             CCCccHHHHHHHHHhcCceeEEEeecC----CHHHHHHHHhcCCCCCCEEEECCEE-EECCCHHHHHHHhc
Confidence            667889999999999999999999864    3332   222212233577776654 68986554444543