Psyllid ID: psy7294

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MLRQNSNSLTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYSDFKV
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccEEEccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHcccccccccccccEEEEEcccEEEEccEEEcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccEccccEEEEEEEccEEEEEccccccccccc
Coil and Loop (DISEMBL)
mlrqnsnsltpiLFMNKTlalnskkwtdcntfgvtlykgdpygfmlevpyAYIGINGFLTASLVdkyykpdltVQEAYSVLKQCVHHmkrrtvlsypkfTVKVLDRTgtvnvlqdlkysdfkv
Flexible Loop (DISEMBL)
mlrqnsnsltpILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHhmkrrtvlsypkftvkvldrtgtvnvlqdlkysdfkv
Low Complexity Region (SEG)
MLRQNSNSLTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYSDFKV
Disordered region (IsUnstruct)
*********TPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKY*****
Disordered Region (DISOPRED)
*********TPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDL*Y*****
Disordered Region (DISEMBL)
MLRQNSNSLTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYSDFKV
Disordered Region (DISPRO)
********LTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKY*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLRQNSNSLTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYSDFKV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
ZFIN|ZDB-GENE-040718-353	199	psmb2 "proteasome (prosome, ma	0.634	0.391	0.410	2.1e-13
UNIPROTKB|Q5E9K0	201	PSMB2 "Proteasome subunit beta	0.691	0.422	0.313	2.2e-11
RGD|61874	201	Psmb2 "proteasome (prosome, ma	0.699	0.427	0.321	2.8e-11
MGI|MGI:1347045	201	Psmb2 "proteasome (prosome, ma	0.691	0.422	0.325	3.5e-11
POMBASE|SPAC31A2.04c	194	SPAC31A2.04c "20S proteasome c	0.861	0.546	0.371	3.5e-11
SGD|S000000814	198	PRE1 "Beta 4 subunit of the 20	0.593	0.368	0.383	3.5e-11
UNIPROTKB|F1NZ80	210	PSMB2 "Proteasome subunit beta	0.617	0.361	0.368	5.8e-11
UNIPROTKB|E2QW34	201	PSMB2 "Proteasome subunit beta	0.691	0.422	0.302	5.8e-11
UNIPROTKB|P49721	201	PSMB2 "Proteasome subunit beta	0.691	0.422	0.302	5.8e-11
CGD|CAL0004727	196	PRE1 [Candida albicans (taxid:	0.869	0.545	0.305	1.8e-09

ZFIN|ZDB-GENE-040718-353 psmb2 "proteasome (prosome, macropain) subunit, beta type, 2" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 32/78 (41%), Positives = 51/78 (65%)

Query:    31 TFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKR 90
             T G  LY  D    + + P+A  G   FLT S++D+YY+PDLT +EA  +LK+C+  + +
Sbjct:   110 TDGPGLYYMDYLSALAKAPFAAHGYGAFLTLSILDRYYRPDLTREEAVDLLKKCLEELNK 169

Query:    91 RTVLSYPKFTVKVLDRTG 108
             R +L+ P FTV+++D+ G
Sbjct:   170 RFILNLPSFTVRLIDKDG 187

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

UNIPROTKB|Q5E9K0 PSMB2 "Proteasome subunit beta type-2" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 27/86 (31%), Positives = 55/86 (63%)

Query:    33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
             G  LY  D    + + P+A  G   FLT S++D+YY P ++ ++A  +L++C+  +++R 
Sbjct:   112 GPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISREKAVELLRKCLEELQKRF 171

Query:    93 VLSYPKFTVKVLDRTGTVNVLQDLKY 118
             +L+ P F+V+++DR G ++ L ++ +
Sbjct:   172 ILNLPTFSVRIIDRNG-IHDLDNISF 196

GO:0005839 "proteasome core complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

RGD|61874 Psmb2 "proteasome (prosome, macropain) subunit, beta type 2" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 28/87 (32%), Positives = 55/87 (63%)

Query:    33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
             G  LY  D    + + P+A  G   FLT S++D+YY P ++ + A  +L++C+  +++R 
Sbjct:   112 GPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRF 171

Query:    93 VLSYPKFTVKVLDRTGTVNVLQDLKYS 119
             +L+ P F+V+V+D+ G  N L+++ ++
Sbjct:   172 ILNLPTFSVRVIDKDGIHN-LENITFT 197

GO:0003674 "molecular_function" evidence=ND

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=ISO;ISS

GO:0010243 "response to organic nitrogen" evidence=IEP

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1347045 Psmb2 "proteasome (prosome, macropain) subunit, beta type 2" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/86 (32%), Positives = 54/86 (62%)

Query:    33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
             G  LY  D    + + P+A  G   FLT S++D+YY P ++ + A  +L++C+  +++R 
Sbjct:   112 GPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRF 171

Query:    93 VLSYPKFTVKVLDRTGTVNVLQDLKY 118
             +L+ P F+V+V+D+ G  N L+++ +
Sbjct:   172 ILNLPTFSVRVIDKDGIHN-LENIAF 196

GO:0000502 "proteasome complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

POMBASE|SPAC31A2.04c SPAC31A2.04c "20S proteasome complex subunit beta 4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 45/121 (37%), Positives = 60/121 (49%)

Query:     2 LRQNSNSLTP---ILFMNKTLA--LNSKKWTDCNTF--GVTLYKGDPYGFMLE------- 47
             LR N N L+P     F  K LA  L S+K    N    G     G P  F L+       
Sbjct:    69 LRHNLN-LSPEATASFTRKQLATSLRSRKPYQVNILLAGYETNLGKPELFWLDYLATCVR 127

Query:    48 VPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT 107
             VPYA  G + F   S+ D+YYKPDLT+ EA  ++K C   +K+R  + +  F  KV+D+ 
Sbjct:   128 VPYACQGYSSFYCLSIFDRYYKPDLTIDEAVRIMKLCFDELKKRMPIDFKGFICKVVDKD 187

Query:   108 G 108
             G
Sbjct:   188 G 188

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007346 "regulation of mitotic cell cycle" evidence=NAS

GO:0019774 "proteasome core complex, beta-subunit complex" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0004175 "endopeptidase activity" evidence=ISO

SGD|S000000814 PRE1 "Beta 4 subunit of the 20S proteasome" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/73 (38%), Positives = 46/73 (63%)

Query:    36 LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLS 95
             LY+ D  G  +E+PY   G +GF T SL+D +Y+PD+T +E   +LK CV  +++R  + 
Sbjct:   116 LYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMD 175

Query:    96 YPKFTVKVLDRTG 108
             +    VK++D+ G
Sbjct:   176 FKGVIVKIVDKDG 188

GO:0019774 "proteasome core complex, beta-subunit complex" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0000502 "proteasome complex" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0061133 "endopeptidase activator activity" evidence=IMP

GO:0010499 "proteasomal ubiquitin-independent protein catabolic process" evidence=IDA

GO:0034515 "proteasome storage granule" evidence=IC

UNIPROTKB|F1NZ80 PSMB2 "Proteasome subunit beta type" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 28/76 (36%), Positives = 46/76 (60%)

Query:    33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
             G  LY  D    + + P+A  G   FLT S++D+YYKP +T +EA  +LK+C+  +++R 
Sbjct:   121 GPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYKPGITREEAVELLKKCLEELQKRF 180

Query:    93 VLSYPKFTVKVLDRTG 108
             VL+   F  + +D+ G
Sbjct:   181 VLNLTSFNARFIDKDG 196

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

UNIPROTKB|E2QW34 PSMB2 "Proteasome subunit beta type" [Canis lupus familiaris (taxid:9615)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 26/86 (30%), Positives = 54/86 (62%)

Query:    33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
             G  LY  D    + + P+A  G   FLT S++D+YY P ++ + A  +L++C+  +++R 
Sbjct:   112 GPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRF 171

Query:    93 VLSYPKFTVKVLDRTGTVNVLQDLKY 118
             +L+ P F+V+++D+ G ++ L ++ +
Sbjct:   172 ILNLPTFSVRIIDKNG-IHDLDNISF 196

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P49721 PSMB2 "Proteasome subunit beta type-2" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 26/86 (30%), Positives = 54/86 (62%)

Query:    33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
             G  LY  D    + + P+A  G   FLT S++D+YY P ++ + A  +L++C+  +++R 
Sbjct:   112 GPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRF 171

Query:    93 VLSYPKFTVKVLDRTGTVNVLQDLKY 118
             +L+ P F+V+++D+ G ++ L ++ +
Sbjct:   172 ILNLPTFSVRIIDKNG-IHDLDNISF 196

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0010243 "response to organic nitrogen" evidence=IEA

GO:0014070 "response to organic cyclic compound" evidence=IEA

GO:0005839 "proteasome core complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

CGD|CAL0004727 PRE1 [Candida albicans (taxid:5476)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 37/121 (30%), Positives = 62/121 (51%)

Query:     2 LRQNSNSLTP---ILFMNKTLA--LNSKK--WTDCNTFGVTLYKGDP------Y-GFMLE 47
             +R+N   L+P     F+   LA  L S+K    +C   G  + K +P      Y G  +E
Sbjct:    69 MRENDIELSPKATASFVRNQLASSLRSRKPYQVNCLIGGYDVKKNEPSLNWIDYLGTQVE 128

Query:    48 VPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT 107
             +PY   G   F T SL+DK+Y+ D+TV++   ++  CV  ++ R  + +    +KV+D+ 
Sbjct:   129 LPYGAHGYAAFYTTSLLDKHYRKDMTVEDGLKLMDMCVKELQTRMPIDFKGVYIKVVDKD 188

Query:   108 G 108
             G
Sbjct:   189 G 189

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0019774 "proteasome core complex, beta-subunit complex" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010499 "proteasomal ubiquitin-independent protein catabolic process" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.25.1	LOW CONFIDENCE prediction!
3rd Layer	3.4.25	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	123
cd03758	193	cd03758, proteasome_beta_type_2, proteasome beta t	1e-20
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	1e-10
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	1e-09
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	2e-08
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	7e-06
cd01901	164	cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term	0.002

>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit

 Score = 81.5 bits (202), Expect = 1e-20
 Identities = 33/83 (39%), Positives = 56/83 (67%)

Query: 30  NTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMK 89
              G +LY  D  G +++VPYA  G   +   S++D+YYKPD+TV+EA  ++K+C+  +K
Sbjct: 109 KVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMKKCIKELK 168

Query: 90  RRTVLSYPKFTVKVLDRTGTVNV 112
           +R +++ P FTVKV+D+ G  ++
Sbjct: 169 KRFIINLPNFTVKVVDKDGIRDL 191

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 193

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score = 55.5 bits (135), Expect = 1e-10
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVL 94
           LY  DP G ++E P+     +G   A  ++D+ YKPD+T++EA  ++K+ +     R + 
Sbjct: 112 LYYVDPLGSLIEAPF-VATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLS 170

Query: 95  SYPKFTVKVLDRTGT 109
           S     V V+ + G 
Sbjct: 171 SGGGVDVAVITKDGV 185

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 21/69 (30%), Positives = 32/69 (46%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLS 95
           LY  DP G ++E     IG         ++K YKPD+T++EA  +  + +     R  LS
Sbjct: 120 LYSIDPSGSVIEYKATAIGSGSQYAYGFLEKLYKPDMTLEEAVELAVKALKEAIERDALS 179

Query: 96  YPKFTVKVL 104
                V V+
Sbjct: 180 GGNIEVAVI 188

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 20/69 (28%), Positives = 32/69 (46%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLS 95
           LY  DP G  +E     IG        +++K YKPD+T++EA  +  + +     R + S
Sbjct: 114 LYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYS 173

Query: 96  YPKFTVKVL 104
                V V+
Sbjct: 174 GGNIEVAVI 182

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 20/83 (24%), Positives = 31/83 (37%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
           G  LY  DP G   E     IG         ++K Y+ DL+++EA  +  + +     R 
Sbjct: 140 GPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERD 199

Query: 93  VLSYPKFTVKVLDRTGTVNVLQD 115
             S     V V+ +      L  
Sbjct: 200 AASGGGIEVAVITKDEGFRKLDG 222

Length = 236

>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHH 87
           LY  DP G ++E P A    +    A SL++K YKPD+T++EA  +  + +  
Sbjct: 112 LYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKALKS 164

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	99.94
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	99.94
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	99.93
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	99.93
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	99.93
PTZ00488	247	Proteasome subunit beta type-5; Provisional	99.92
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	99.92
KOG0177|consensus	200		99.92
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	99.92
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	99.92
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	99.92
KOG0179|consensus	235		99.91
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	99.91
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	99.9
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	99.9
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	99.88
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	99.87
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	99.87
KOG0175|consensus	285		99.86
PTZ00246	253	proteasome subunit alpha; Provisional	99.85
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	99.84
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	99.84
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	99.84
PRK03996	241	proteasome subunit alpha; Provisional	99.84
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	99.84
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	99.83
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	99.83
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	99.83
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	99.81
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	99.81
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	99.81
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	99.81
KOG0174|consensus	224		99.8
KOG0173|consensus	271		99.77
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	99.72
KOG0185|consensus	256		99.71
KOG0176|consensus	241		99.69
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	99.64
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	99.61
KOG0181|consensus	233		99.53
KOG0183|consensus	249		99.5
KOG0180|consensus	204		99.45
KOG0178|consensus	249		99.38
KOG0182|consensus	246		99.22
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	99.19
KOG0863|consensus	264		98.83
KOG0184|consensus	254		98.39
KOG3361|consensus	157		95.14
PF09894	194	DUF2121: Uncharacterized protein conserved in arch	94.67
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	93.0
COG3484	255	Predicted proteasome-type protease [Posttranslatio	92.29
COG4079	293	Uncharacterized protein conserved in archaea [Func	84.7
COG3193	141	GlcG Uncharacterized protein, possibly involved in	82.12
PRK09732	134	hypothetical protein; Provisional	81.45
PF03928	132	DUF336: Domain of unknown function (DUF336); Inter	80.99

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=99.94  E-value=3.1e-26  Score=173.95  Aligned_cols=115  Identities=18%  Similarity=0.213  Sum_probs=104.1

Q ss_pred             cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC---------CC
Q psy7294           4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK---------PD   71 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~---------~~   71 (123)
                      ..+++||.++|.+|..||.+.   .|||+ +++|+||++||+|++.+++++|+|+|+.+++++||+.|+         ++
T Consensus        86 ~la~~ls~~ly~~R~~P~~~~~iiaG~D~-~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~  164 (212)
T cd03757          86 AIAQLLSTILYSRRFFPYYVFNILAGIDE-EGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTP  164 (212)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEEEEEEcC-CCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCC
Confidence            346789999999888887664   46795 567999999999999999999999999999999999985         89


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294          72 LTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS  119 (123)
Q Consensus        72 mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~  119 (123)
                      ||+|||++|+++|++++.+||+.++++++|++|+++|++.....+|-|
T Consensus       165 ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~~~~~  212 (212)
T cd03757         165 LSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFPLRKD  212 (212)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeeccCCC
Confidence            999999999999999999999999999999999999998888777754

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=99.94  E-value=5.2e-26  Score=169.62  Aligned_cols=107  Identities=23%  Similarity=0.290  Sum_probs=99.3

Q ss_pred             cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      .-+++|++++++++..||.+.   .|||  ..||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus        78 ~la~~ls~~l~~~~~~~~~v~~li~G~D--~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l  155 (188)
T cd03761          78 AASKLLSNMLYQYKGMGLSMGTMICGWD--KTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDL  155 (188)
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEEEEe--CCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            346889999999988887653   3679  46899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV  112 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l  112 (123)
                      +.+|+..+.+||+.++++++|.+|+++|++++
T Consensus       156 ~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~  187 (188)
T cd03761         156 ARRAIYHATHRDAYSGGNVNLYHVREDGWRKI  187 (188)
T ss_pred             HHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence            99999999999999999999999999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=99.93  E-value=9.3e-26  Score=169.10  Aligned_cols=108  Identities=13%  Similarity=0.100  Sum_probs=98.6

Q ss_pred             ccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           5 NSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      -+++|++++|.+|..||-+..   |||+ ++||+||++||+|++..++ ++|+|+|+.+++++||+.|+++||+|||++|
T Consensus        82 la~~l~~~ly~~r~~P~~v~~ii~G~D~-~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l  160 (195)
T cd03759          82 FSSLISSLLYEKRFGPYFVEPVVAGLDP-DGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFET  160 (195)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEEEEcC-CCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence            467899999888888877643   6796 6679999999999998888 9999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL  113 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~  113 (123)
                      +++||+.+.+||+.++++++|++|+++|+++..
T Consensus       161 ~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~  193 (195)
T cd03759         161 ISQALLSAVDRDALSGWGAVVYIITKDKVTTRT  193 (195)
T ss_pred             HHHHHHHHHhhCcccCCceEEEEEcCCcEEEEe
Confidence            999999999999999999999999999986643

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=99.93  E-value=4.3e-25  Score=165.60  Aligned_cols=108  Identities=22%  Similarity=0.274  Sum_probs=98.2

Q ss_pred             cccchhhHHHhhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC--CCCHHH
Q psy7294           4 QNSNSLTPILFMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP--DLTVQE   76 (123)
Q Consensus         4 ~~~~~~~~~~~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~--~mt~eE   76 (123)
                      ..+++|++++|.++  ..||.+..   |||+ +.||+||++||+|++.+++++|+|+|+.+++++||+.|++  +||+||
T Consensus        81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~-~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~ee  159 (197)
T cd03760          81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDN-EGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEE  159 (197)
T ss_pred             HHHHHHHHHHHHHhhcCCCceEEEEEEEEcC-CCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHH
Confidence            34678899998865  67877643   6895 5789999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV  112 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l  112 (123)
                      |++|+++|++.+.+||+.++++++|.+|+++|++..
T Consensus       160 a~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~  195 (197)
T cd03760         160 ARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIE  195 (197)
T ss_pred             HHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeC
Confidence            999999999999999999999999999999998764

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=99.93  E-value=4.7e-25  Score=165.18  Aligned_cols=108  Identities=33%  Similarity=0.581  Sum_probs=96.3

Q ss_pred             ccchhhHHHhh-hcc-cccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294           5 NSNSLTPILFM-NKT-LALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYS   79 (123)
Q Consensus         5 ~~~~~~~~~~~-~~~-~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~   79 (123)
                      -+++|+++++. .+. .||.+.   .|||+ +.||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||++
T Consensus        80 la~~l~~~~~~~~~~~rP~~~~~li~G~d~-~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~  158 (193)
T cd03758          80 AANFTRRELAESLRSRTPYQVNLLLAGYDK-VEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALE  158 (193)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEEEEEEcC-CCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHH
Confidence            46788888843 233 587764   36796 5789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL  113 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~  113 (123)
                      ++.+|++.+.+||+.++++++|++|+++|++.++
T Consensus       159 l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~  192 (193)
T cd03758         159 LMKKCIKELKKRFIINLPNFTVKVVDKDGIRDLE  192 (193)
T ss_pred             HHHHHHHHHHHhccccCCceEEEEEcCCCeEeCC
Confidence            9999999999999999999999999999998754

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=99.92  E-value=4e-25  Score=172.13  Aligned_cols=110  Identities=21%  Similarity=0.171  Sum_probs=101.6

Q ss_pred             cccchhhHHHhhhccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      .-+++||.+++++|.+|+++   =.|||  .+||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||++|
T Consensus       117 ~la~~ls~~l~~~R~~~~~v~~iiaG~D--~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l  194 (247)
T PTZ00488        117 AASKILANIVWNYKGMGLSMGTMICGWD--KKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDL  194 (247)
T ss_pred             HHHHHHHHHHHhcCCCCeeEEEEEEEEe--CCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHH
Confidence            35688999999999888874   45789  46799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecc
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQD  115 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~  115 (123)
                      +++||+++.+||+.++++++|++|+++|++.++..
T Consensus       195 ~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~  229 (247)
T PTZ00488        195 GRRAIYHATFRDAYSGGAINLYHMQKDGWKKISAD  229 (247)
T ss_pred             HHHHHHHHHHhccccCCCeEEEEEcCCccEECCHH
Confidence            99999999999999999999999999999888743

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=99.92  E-value=7.6e-25  Score=162.70  Aligned_cols=108  Identities=24%  Similarity=0.269  Sum_probs=99.9

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      .-+++++.++++++.+||.+..   |+|+  +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus        78 ~l~~~i~~~~~~~~~~P~~~~~lvaG~d~--~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l  155 (188)
T cd03764          78 ALATLLSNILNSSKYFPYIVQLLIGGVDE--EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKL  155 (188)
T ss_pred             HHHHHHHHHHHhcCCCCcEEEEEEEEEeC--CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            3467889999999999987643   7894  6799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL  113 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~  113 (123)
                      +++|++.+.+||+.++++++|.+|+++|++.++
T Consensus       156 ~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~~  188 (188)
T cd03764         156 AIRAIKSAIERDSASGDGIDVVVITKDGYKELE  188 (188)
T ss_pred             HHHHHHHHHhhcCCCCCcEEEEEECCCCeEeCC
Confidence            999999999999999999999999999988764

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0177|consensus

Probab=99.92  E-value=3.2e-25  Score=165.59  Aligned_cols=89  Identities=36%  Similarity=0.652  Sum_probs=85.7

Q ss_pred             cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          25 KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        25 ~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      .|||+ ..||.||++|+.|+..+.+++++|+|+.||.++||.+|+|+||.|||++|+++|+.++++|.+++.++|.|.||
T Consensus       105 aGYd~-~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IV  183 (200)
T KOG0177|consen  105 AGYDP-EEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIV  183 (200)
T ss_pred             eccCC-CCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Confidence            48998 66799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEeec
Q psy7294         105 DRTGTVNVLQ  114 (123)
Q Consensus       105 ~kdG~~~l~~  114 (123)
                      ||||+|.+..
T Consensus       184 dkdGir~~~~  193 (200)
T KOG0177|consen  184 DKDGIRKLDD  193 (200)
T ss_pred             cCCCceeccc
Confidence            9999998864

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=99.92  E-value=1.4e-24  Score=160.75  Aligned_cols=105  Identities=24%  Similarity=0.327  Sum_probs=97.2

Q ss_pred             ccccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294           3 RQNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYS   79 (123)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~   79 (123)
                      +.-+++|++++++++.+||.+.   .|+|  ++||+||++||+|++.+++++++|+|+.+++++||+.|+++||.+||++
T Consensus        78 ~~~a~~l~~~~~~~~~rP~~v~~ivaG~d--~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~  155 (185)
T TIGR03634        78 KALATLLSNILNSNRFFPFIVQLLVGGVD--EEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKK  155 (185)
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEEEEEEe--CCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence            3457889999999999998763   3679  4579999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGT  109 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~  109 (123)
                      ++++|++.+.+||+.++++++|++|+++|+
T Consensus       156 l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~  185 (185)
T TIGR03634       156 LAVRAIKSAIERDVASGNGIDVAVITKDGV  185 (185)
T ss_pred             HHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence            999999999999999999999999999985

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=99.92  E-value=2.8e-24  Score=159.66  Aligned_cols=107  Identities=19%  Similarity=0.240  Sum_probs=96.5

Q ss_pred             ccccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294           3 RQNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYS   79 (123)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~   79 (123)
                      +..+++|+.++++++ .||.+.   .|+|+ ++||+||++||.|++.+++++++|+|+.+++++||+.|+++||.|||++
T Consensus        77 ~~~a~~l~~~~~~~~-~~~~~~~ii~G~d~-~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~  154 (188)
T cd03762          77 KTAASLFKNLCYNYK-EMLSAGIIVAGWDE-QNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIK  154 (188)
T ss_pred             HHHHHHHHHHHHhcc-ccceeeEEEEEEcC-CCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence            345678888887764 556664   47896 6789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN  111 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~  111 (123)
                      |+++|++.+.+||+.++++++|.+|+++|+++
T Consensus       155 l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~  186 (188)
T cd03762         155 FVKNALSLAMSRDGSSGGVIRLVIITKDGVER  186 (188)
T ss_pred             HHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence            99999999999999999999999999999865

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=99.92  E-value=3.5e-24  Score=159.59  Aligned_cols=106  Identities=21%  Similarity=0.273  Sum_probs=94.9

Q ss_pred             ccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294           5 NSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL   81 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~   81 (123)
                      -+++|+++++..+. ||.+.   .|+|  ++||+||++||+|++.+++++|+|+|+.+++++||+.|+|+||.+||++|+
T Consensus        79 ~a~~l~~~l~~~~~-p~~v~~ivaG~d--~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~  155 (189)
T cd03763          79 ALTMLKQHLFRYQG-HIGAALVLGGVD--YTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLV  155 (189)
T ss_pred             HHHHHHHHHHHcCC-ccceeEEEEeEc--CCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence            35788888876543 65443   3668  457999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294          82 KQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL  113 (123)
Q Consensus        82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~  113 (123)
                      ++||+.+.+||+.++++++|++|+++|+++.+
T Consensus       156 ~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~  187 (189)
T cd03763         156 CEAIEAGIFNDLGSGSNVDLCVITKDGVEYLR  187 (189)
T ss_pred             HHHHHHHHHhcCcCCCceEEEEEcCCcEEEec
Confidence            99999999999999999999999999998765

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0179|consensus

Probab=99.91  E-value=2.6e-24  Score=163.17  Aligned_cols=114  Identities=16%  Similarity=0.205  Sum_probs=105.4

Q ss_pred             ccchhhHHHhhhccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccC-----------CC
Q psy7294           5 NSNSLTPILFMNKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYY-----------KP   70 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y-----------~~   70 (123)
                      .+++||.+||.+|++||.+   -.|+|+ .++|.+|+.||.|++.+..|.|.|+|+.+++|+||+..           ++
T Consensus       108 ~A~lls~~LY~kRFFPYYv~~ilaGiDe-eGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~  186 (235)
T KOG0179|consen  108 AAQLLSTILYSKRFFPYYVFNILAGIDE-EGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERT  186 (235)
T ss_pred             HHHHHHHHHhhcccccceeeeeeecccc-cCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccCccc
Confidence            4789999999999999877   458896 67899999999999999999999999999999999853           24


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294          71 DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS  119 (123)
Q Consensus        71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~  119 (123)
                      .||+|||+.|+++++..|.+||+.++++++|+||+++|+++...+||+|
T Consensus       187 ~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~LrkD  235 (235)
T KOG0179|consen  187 PLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLPLRKD  235 (235)
T ss_pred             ccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeeeccCC
Confidence            6999999999999999999999999999999999999999999999975

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=99.91  E-value=6.1e-24  Score=164.78  Aligned_cols=115  Identities=15%  Similarity=0.186  Sum_probs=96.1

Q ss_pred             cccchhhHHHhh----hc------ccccccc---cceeCCCCceEEEEECCCCceeee----CeEEEcccHHHHHHHHHc
Q psy7294           4 QNSNSLTPILFM----NK------TLALNSK---KWTDCNTFGVTLYKGDPYGFMLEV----PYAYIGINGFLTASLVDK   66 (123)
Q Consensus         4 ~~~~~~~~~~~~----~~------~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~----~~~a~G~Gs~~~~~~Ld~   66 (123)
                      +.++.+++++.+    .+      .+||.+.   +|||+ +.||+||++||+|++.++    +|+|+|. +.+++++||+
T Consensus        82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~-~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek  159 (236)
T cd03765          82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIK-GEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR  159 (236)
T ss_pred             HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEEC-CCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence            345666666544    33      4687774   47896 578999999999999999    5689995 7999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE-eeccccccc
Q psy7294          67 YYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN-VLQDLKYSD  120 (123)
Q Consensus        67 ~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~-l~~~~k~~~  120 (123)
                      +|+++||+|||++|+++||.++.+||..++++|+|.+|+++|+++ ....+-.||
T Consensus       160 ~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~~~~  214 (236)
T cd03765         160 VITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIEEDD  214 (236)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEecCCC
Confidence            999999999999999999999999999999999999999999887 444444444

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.5e-23  Score=162.20  Aligned_cols=110  Identities=22%  Similarity=0.227  Sum_probs=101.6

Q ss_pred             cccchhhHHHhhhcc--ccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           4 QNSNSLTPILFMNKT--LALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~--~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      ..+++||+++++.+.  +||.+..   |+|+  +||+||++||+|++.+++++|+|+|+.+++++||++|+++|++|||+
T Consensus       108 ~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~--~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai  185 (236)
T COG0638         108 ALAKLLSNILQEYTQSGRPYGVSLLVAGVDD--GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAI  185 (236)
T ss_pred             HHHHHHHHHHHHhccCcccceEEEEEEEEcC--CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHH
Confidence            357899999999988  9999866   7885  78999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEEcC-CCeEEeecc
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVLDR-TGTVNVLQD  115 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~k-dG~~~l~~~  115 (123)
                      +|+.+||.++.+||..++++++|.+|++ +|.+.+...
T Consensus       186 ~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~  223 (236)
T COG0638         186 ELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGE  223 (236)
T ss_pred             HHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHH
Confidence            9999999999999999999999999999 688777643

>cd01912 proteasome_beta proteasome beta subunit

Probab=99.90  E-value=3.6e-23  Score=153.13  Aligned_cols=107  Identities=26%  Similarity=0.404  Sum_probs=98.1

Q ss_pred             ccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294           5 NSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL   81 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~   81 (123)
                      -+++++.+++.++..||.+.   .|+|+ +++|+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||++++
T Consensus        79 l~~~l~~~~~~~~~~P~~~~~iv~G~d~-~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~  157 (189)
T cd01912          79 AANLLSNILYSYRGFPYYVSLIVGGVDK-GGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELV  157 (189)
T ss_pred             HHHHHHHHHHhcCCCCeEEEEEEEEEcC-CCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            35778888888777888775   47895 578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294          82 KQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV  112 (123)
Q Consensus        82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l  112 (123)
                      ++|++.+.+||+.++++++|.+|+++|++..
T Consensus       158 ~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~  188 (189)
T cd01912         158 KKAIDSAIERDLSSGGGVDVAVITKDGVEEL  188 (189)
T ss_pred             HHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence            9999999999999999999999999998764

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=99.88  E-value=5.4e-22  Score=151.92  Aligned_cols=105  Identities=16%  Similarity=0.184  Sum_probs=92.3

Q ss_pred             cchhhHHH--hhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           6 SNSLTPIL--FMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         6 ~~~~~~~~--~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      +++|+.++  |.+  +.+||.+..   |||+  .||+||++||+|++.+++++|+|+|+.+++++||++|+++||+|||+
T Consensus       106 a~~l~~~~~~~t~~~~~rP~~v~~li~G~D~--~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai  183 (227)
T cd03750         106 VREIASVMQEYTQSGGVRPFGVSLLIAGWDE--GGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAI  183 (227)
T ss_pred             HHHHHHHHHHhcCCCCCCChheEEEEEEEeC--CCCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHH
Confidence            56788877  433  367876643   7894  48999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEee
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVL  113 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~  113 (123)
                      +++++||.++.+|+ +++++++|++|+++ |++.++
T Consensus       184 ~l~~~~l~~~~~~~-l~~~~iev~iv~~~~~~~~~~  218 (227)
T cd03750         184 HTAILTLKEGFEGQ-MTEKNIEIGICGETKGFRLLT  218 (227)
T ss_pred             HHHHHHHHHHhccc-CCCCcEEEEEEECCCCEEECC
Confidence            99999999999997 59999999999996 787764

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=99.87  E-value=7.2e-22  Score=150.74  Aligned_cols=110  Identities=20%  Similarity=0.198  Sum_probs=93.3

Q ss_pred             ccchhhHHHhhh---cccccccc---cceeCCCCceEEEEECCCC-ceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294           5 NSNSLTPILFMN---KTLALNSK---KWTDCNTFGVTLYKGDPYG-FMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA   77 (123)
Q Consensus         5 ~~~~~~~~~~~~---~~~~~~~~---~~~D~~~~gP~Ly~iD~~G-s~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA   77 (123)
                      -+++||.++++.   ...||.+.   .|||+..++|+||++||+| ++..++++|+|+|+.+++++||+.|+++||.|||
T Consensus        81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea  160 (219)
T TIGR03690        81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA  160 (219)
T ss_pred             HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence            356777788653   34565543   3789634689999999999 5888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccccCCc-------EEEEEEcCCCeEEeec
Q psy7294          78 YSVLKQCVHHMKRRTVLSYPK-------FTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        78 i~L~~k~i~~a~~Rd~~s~~~-------~~V~vI~kdG~~~l~~  114 (123)
                      ++++++||..+.+||..+++.       ++|++|+++|++.++.
T Consensus       161 i~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~  204 (219)
T TIGR03690       161 LRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPE  204 (219)
T ss_pred             HHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCH
Confidence            999999999999999877775       3999999999988764

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=99.87  E-value=1.6e-21  Score=148.74  Aligned_cols=106  Identities=17%  Similarity=0.224  Sum_probs=92.1

Q ss_pred             ccchhhHHH--hhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294           5 NSNSLTPIL--FMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA   77 (123)
Q Consensus         5 ~~~~~~~~~--~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA   77 (123)
                      -++.|+.++  |.+  +.+||.+..   |+|  ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||
T Consensus       107 la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d--~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eea  184 (224)
T TIGR03633       107 LAKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEA  184 (224)
T ss_pred             HHHHHHHHHHHhcCCCCccccceEEEEEEEe--CCcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHH
Confidence            456778876  322  356777643   689  56899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccccCCcEEEEEEcCCC--eEEee
Q psy7294          78 YSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG--TVNVL  113 (123)
Q Consensus        78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG--~~~l~  113 (123)
                      ++|+++|+..+.+ |+.++++++|.+|+++|  .+.++
T Consensus       185 i~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~  221 (224)
T TIGR03633       185 IELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLS  221 (224)
T ss_pred             HHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECC
Confidence            9999999999888 89999999999999998  55443

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>KOG0175|consensus

Probab=99.86  E-value=6.9e-22  Score=153.60  Aligned_cols=107  Identities=23%  Similarity=0.273  Sum_probs=101.9

Q ss_pred             ccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294           5 NSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL   81 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~   81 (123)
                      +|..||||+++-|.+.|+...   |||  +.||.||+||.-|+-.+.+-.++||||.+|+++||..|++||+.|||++|+
T Consensus       150 ASKllsN~~y~YkGmGLsmGtMi~G~D--k~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~  227 (285)
T KOG0175|consen  150 ASKLLSNMVYQYKGMGLSMGTMIAGWD--KKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLA  227 (285)
T ss_pred             HHHHHHHHHhhccCcchhheeeEeecc--CCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHH
Confidence            678999999999999999865   579  789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294          82 KQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL  113 (123)
Q Consensus        82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~  113 (123)
                      ++||..|.+||..+|..+.+.-|+.+|+..++
T Consensus       228 rrAI~hAThRDaySGG~vnlyHv~edGW~~v~  259 (285)
T KOG0175|consen  228 RRAIYHATHRDAYSGGVVNLYHVKEDGWVKVS  259 (285)
T ss_pred             HHHHHHHHhcccccCceEEEEEECCccceecC
Confidence            99999999999999999999999999987765

>PTZ00246 proteasome subunit alpha; Provisional

Probab=99.85  E-value=5.8e-21  Score=148.41  Aligned_cols=91  Identities=21%  Similarity=0.230  Sum_probs=84.5

Q ss_pred             cccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhccc
Q psy7294          17 KTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTV   93 (123)
Q Consensus        17 ~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~   93 (123)
                      +.+||.+.   .|||+ +.||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||++|+++||..+..||+
T Consensus       126 ~~rP~~v~~li~G~D~-~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~  204 (253)
T PTZ00246        126 GLRPFGVSFLFAGYDE-NLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTS  204 (253)
T ss_pred             CcccCCEEEEEEEEeC-CCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccC
Confidence            45676664   47896 568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcEEEEEEcCCC
Q psy7294          94 LSYPKFTVKVLDRTG  108 (123)
Q Consensus        94 ~s~~~~~V~vI~kdG  108 (123)
                      .++++++|++|+++|
T Consensus       205 ~s~~~vev~ii~~~~  219 (253)
T PTZ00246        205 PKADKIEVGILSHGE  219 (253)
T ss_pred             CCCCcEEEEEEecCC
Confidence            999999999999986

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=99.84  E-value=8.8e-21  Score=146.22  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=85.6

Q ss_pred             ccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHH--Hh
Q psy7294          17 KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHM--KR   90 (123)
Q Consensus        17 ~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a--~~   90 (123)
                      +.+||-+..   |||+.+.||+||++||+|++.+++ ++|+|+|+.+++++||++|+++||.|||++|+++||.++  .+
T Consensus       114 ~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~  193 (228)
T TIGR03691       114 QQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGE  193 (228)
T ss_pred             ccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccc
Confidence            457766643   678535689999999999999976 899999999999999999999999999999999999999  46


Q ss_pred             cccccCCcEEEEEEcCCC----eEEeec
Q psy7294          91 RTVLSYPKFTVKVLDRTG----TVNVLQ  114 (123)
Q Consensus        91 Rd~~s~~~~~V~vI~kdG----~~~l~~  114 (123)
                      ||.+++++++|++|++++    .+.++.
T Consensus       194 r~~~~~~~iEv~ii~k~~~~~~f~~l~~  221 (228)
T TIGR03691       194 KRELDAASLEVAVLDRSRPRRAFRRITG  221 (228)
T ss_pred             cccCCccceEEEEEeCCCCccceEECCH
Confidence            888999999999999764    666553

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=99.84  E-value=9.5e-21  Score=138.66  Aligned_cols=101  Identities=25%  Similarity=0.327  Sum_probs=92.1

Q ss_pred             ccccchhhHHHhhhcc--ccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294           3 RQNSNSLTPILFMNKT--LALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA   77 (123)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA   77 (123)
                      +..+++|+.+++.++.  .||.+..   |+|+ +.||+||.+||.|++.+++++|+|+|+.+++++||+.|+++||.+||
T Consensus        77 ~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~-~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea  155 (182)
T cd01906          77 EALAKLLANLLYEYTQSLRPLGVSLLVAGVDE-EGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEA  155 (182)
T ss_pred             HHHHHHHHHHHHHhCCCccChheEEEEEEEeC-CCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHH
Confidence            3457788899988876  8887754   6785 57899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          78 YSVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      ++++++|++.+.+||+.++..++|.+|
T Consensus       156 ~~l~~~~l~~~~~~~~~~~~~~~i~ii  182 (182)
T cd01906         156 IELALKALKSALERDLYSGGNIEVAVI  182 (182)
T ss_pred             HHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence            999999999999999999999999975

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=99.84  E-value=1.4e-20  Score=138.54  Aligned_cols=98  Identities=24%  Similarity=0.360  Sum_probs=87.5

Q ss_pred             cchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeee-CeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294           6 SNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEV-PYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL   81 (123)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~-~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~   81 (123)
                      +.++...++.++..||.+..   |+|+ .++|+||.+||.|++.++ ++.|+|+|+.+++++||+.|+++||.+||++++
T Consensus        89 ~~~~~~~~~~~~~~p~~~~~li~G~d~-~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~  167 (190)
T PF00227_consen   89 ASLIQNYTYRSGRRPYGVSLLIAGYDE-DGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEEAIELA  167 (190)
T ss_dssp             HHHHHHHHHHTTTSTTSEEEEEEEEET-TTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHHHHHHH
T ss_pred             HHHHhhhcccccccCccccceeeeecc-ccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCHHHHHHHH
Confidence            34455555667778877743   7895 667999999999999999 699999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCcEEEEEE
Q psy7294          82 KQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        82 ~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      ++||+.+.+||+.++++++|+||
T Consensus       168 ~~~l~~~~~~d~~~~~~~~v~vi  190 (190)
T PF00227_consen  168 LKALKEAIDRDILSGDNIEVAVI  190 (190)
T ss_dssp             HHHHHHHHHHBTTSTSEEEEEEE
T ss_pred             HHHHHHHHhhCCccCCeEEEEEC
Confidence            99999999999999999999987

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>PRK03996 proteasome subunit alpha; Provisional

Probab=99.84  E-value=2.3e-20  Score=143.91  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=89.7

Q ss_pred             cchhhHHH--hhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           6 SNSLTPIL--FMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         6 ~~~~~~~~--~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      +++|++++  |.+  ..+||.+..   |||  ..||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||+
T Consensus       115 a~~ls~~~~~~~~~~~~rP~~~~~ilaG~d--~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai  192 (241)
T PRK03996        115 TKKICDHKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAI  192 (241)
T ss_pred             HHHHHHHHHHhcCCCCccchheEEEEEEEe--CCcCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHH
Confidence            45677776  322  355776643   689  457999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEEcCCC--eEEee
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTG--TVNVL  113 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG--~~~l~  113 (123)
                      +|+++|+..+.+| ..++++++|++|+++|  .+.+.
T Consensus       193 ~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~  228 (241)
T PRK03996        193 ELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLS  228 (241)
T ss_pred             HHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECC
Confidence            9999999999886 5799999999999987  55543

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=99.84  E-value=1.7e-20  Score=141.79  Aligned_cols=96  Identities=15%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             ccchhhHHH--hhh--cccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294           5 NSNSLTPIL--FMN--KTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA   77 (123)
Q Consensus         5 ~~~~~~~~~--~~~--~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA   77 (123)
                      -+++||.++  |.+  +.+||.+.   .|||+ +.||+||++||+|++.+++++|+|+|+.+++++||++|+++||.|||
T Consensus       105 la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea  183 (207)
T cd03755         105 ITRYIAGLQQRYTQSGGVRPFGISTLIVGFDP-DGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDT  183 (207)
T ss_pred             HHHHHHHHHHHHhcccCcccceeEEEEEEEeC-CCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHH
Confidence            357888888  554  46688775   47896 56899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          78 YSVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      ++++++|+.++.+   .+++++||++|
T Consensus       184 i~l~~~~l~~~~~---~~~~~~e~~~~  207 (207)
T cd03755         184 IKLAIKALLEVVQ---SGSKNIELAVM  207 (207)
T ss_pred             HHHHHHHHHHHhC---CCCCeEEEEEC
Confidence            9999999999986   79999999985

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=99.83  E-value=2.8e-20  Score=141.10  Aligned_cols=98  Identities=24%  Similarity=0.294  Sum_probs=85.2

Q ss_pred             cchhhHHH--hh--hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           6 SNSLTPIL--FM--NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         6 ~~~~~~~~--~~--~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      +++||.++  |.  ...+||.+..   |||+ ..||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||+
T Consensus       109 a~~ls~~~~~~t~~~~~RP~~v~~li~G~D~-~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~  187 (213)
T cd03752         109 VQRLCDIKQGYTQYGGLRPFGVSFLYAGWDK-HYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEAL  187 (213)
T ss_pred             HHHHHHHHHHHhcCCCcccceeEEEEEEEeC-CCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHH
Confidence            45566554  32  2445776643   6896 568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      +|+++|+..+.+||..++++++|++|
T Consensus       188 ~l~~~al~~~~~r~~~~~~~~ei~~~  213 (213)
T cd03752         188 ALAVKVLSKTMDSTKLTSEKLEFATL  213 (213)
T ss_pred             HHHHHHHHHHHhccCCCCCcEEEEEC
Confidence            99999999999999999999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=99.83  E-value=2.8e-20  Score=140.80  Aligned_cols=97  Identities=15%  Similarity=0.182  Sum_probs=85.6

Q ss_pred             cchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           6 SNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         6 ~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      +++|+.++.+    .+.+||.+..   |||  ..||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||+
T Consensus       107 a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D--~~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~  184 (211)
T cd03756         107 VKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAI  184 (211)
T ss_pred             HHHHHHHHHHhcCCCCeechhEEEEEEEEe--CCCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHH
Confidence            5677777632    2567877643   689  458999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVLD  105 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~  105 (123)
                      +++++|+..+.+|+. ++++++|++|+
T Consensus       185 ~l~~~~l~~~~~~~~-~~~~~~v~ii~  210 (211)
T cd03756         185 ELALKALYAALEENE-TPENVEIAYVT  210 (211)
T ss_pred             HHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence            999999999999885 99999999986

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=99.83  E-value=2.5e-20  Score=140.75  Aligned_cols=98  Identities=18%  Similarity=0.250  Sum_probs=85.9

Q ss_pred             ccchhhHHH--hhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294           5 NSNSLTPIL--FMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA   77 (123)
Q Consensus         5 ~~~~~~~~~--~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA   77 (123)
                      -+++||.++  |.+  ...||.+..   |+|+ +.||+||.+||.|++.+.+++++|+|+.+++++||+.|+++||.|||
T Consensus       105 la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~-~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea  183 (209)
T cd01911         105 LVKRIADLAQVYTQYGGVRPFGVSLLIAGYDE-EGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEA  183 (209)
T ss_pred             HHHHHHHHHHHHhcccCccChhheEEEEEEcC-CCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHH
Confidence            456778877  332  344776643   6796 56899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          78 YSVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      ++++++|+.++..||+ ++++++|+++
T Consensus       184 ~~l~~~~l~~~~~~d~-~~~~~~i~i~  209 (209)
T cd01911         184 IKLALKALKEVLEEDK-KAKNIEIAVV  209 (209)
T ss_pred             HHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence            9999999999999998 9999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=99.81  E-value=1.5e-19  Score=137.20  Aligned_cols=98  Identities=11%  Similarity=0.135  Sum_probs=85.0

Q ss_pred             cchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC--CCCCHHH
Q psy7294           6 SNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK--PDLTVQE   76 (123)
Q Consensus         6 ~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~--~~mt~eE   76 (123)
                      ++.+|.++..    .+.+||-+..   |||+  .||+||++||+|++.+++++|+|+|+.+++++||++|+  ++||+||
T Consensus       104 a~~is~~~~~~t~~~~~rP~~v~~ii~G~D~--~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee  181 (211)
T cd03749         104 VSKVAEKAQINTQRYGRRPYGVGLLIAGYDE--SGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEE  181 (211)
T ss_pred             HHHHHHHHHHHhcccCCCCceEEEEEEEEcC--CCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHH
Confidence            3556665532    2455777743   7894  58999999999999999999999999999999999999  6999999


Q ss_pred             HHHHHHHHHHHHHhccc-ccCCcEEEEEEc
Q psy7294          77 AYSVLKQCVHHMKRRTV-LSYPKFTVKVLD  105 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~-~s~~~~~V~vI~  105 (123)
                      |++++.++++.+..+|. .++++++|++|+
T Consensus       182 ~i~~~~~~l~~~~~~~~~~~~~~iei~ii~  211 (211)
T cd03749         182 LIKHALRALRETLPGEQELTIKNVSIAIVG  211 (211)
T ss_pred             HHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence            99999999999999988 999999999984

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=99.81  E-value=1.2e-19  Score=138.18  Aligned_cols=98  Identities=18%  Similarity=0.307  Sum_probs=85.2

Q ss_pred             ccchhhHH--Hhhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCC--C--C
Q psy7294           5 NSNSLTPI--LFMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPD--L--T   73 (123)
Q Consensus         5 ~~~~~~~~--~~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~--m--t   73 (123)
                      -++.+|++  +|..  ..+||.+..   |||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|+++  |  |
T Consensus       107 la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~-~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s  185 (215)
T cd03754         107 LAKRIADINQVYTQHAYMRPLGVSMILIGIDE-ELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLIES  185 (215)
T ss_pred             HHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeC-CCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccCCC
Confidence            45677876  4543  345877754   7896 56899999999999999999999999999999999999995  7  9


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      .|||++++++||.++.+|| +++++++|++|
T Consensus       186 ~eeai~l~~~al~~~~~rd-~~~~~~ei~~~  215 (215)
T cd03754         186 YEETVELAISCLQTVLSTD-FKATEIEVGVV  215 (215)
T ss_pred             HHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence            9999999999999999999 56999999985

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=99.81  E-value=1.4e-19  Score=137.77  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=83.7

Q ss_pred             cchhhHHHhhh----ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           6 SNSLTPILFMN----KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         6 ~~~~~~~~~~~----~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      +++||+++...    ..+||.+..   |||  +.||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||+
T Consensus       109 a~~ls~~~~~~t~~~~~rP~~vs~li~G~D--~~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai  186 (212)
T cd03751         109 ADRVAMYMHAYTLYSSVRPFGCSVLLGGYD--SDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAV  186 (212)
T ss_pred             HHHHHHHHHHhccCCCcCCceEEEEEEEEe--CCcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHH
Confidence            56677765331    345766643   789  458999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      +++.+++..+.+-+..+..+++|+++
T Consensus       187 ~l~~~~L~~~~~~~~~~~~~iei~~~  212 (212)
T cd03751         187 KEAAKIIYIVHDEIKDKAFELELSWV  212 (212)
T ss_pred             HHHHHHHHHHhhccCCCCccEEEEEC
Confidence            99999999999877788999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=99.81  E-value=1.7e-19  Score=136.65  Aligned_cols=96  Identities=16%  Similarity=0.229  Sum_probs=83.7

Q ss_pred             cchhhHHHhh--hc-------cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCC
Q psy7294           6 SNSLTPILFM--NK-------TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLT   73 (123)
Q Consensus         6 ~~~~~~~~~~--~~-------~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt   73 (123)
                      +++|+.++++  ++       .+||.+..   |||  ..||+||++||.|++.+++++|+|+|+++++++|++.|+++||
T Consensus       106 ~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D--~~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls  183 (213)
T cd03753         106 TQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVD--ENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMT  183 (213)
T ss_pred             HHHHHHHHHHHhCcccccccccccceEEEEEEEEc--CCCCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccCCCC
Confidence            4567787754  32       36776633   679  4689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      .|||++|+.+||+.+.+|+ .++++++|++|
T Consensus       184 ~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~  213 (213)
T cd03753         184 LEEAEKLALSILKQVMEEK-LNSTNVELATV  213 (213)
T ss_pred             HHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence            9999999999999998876 99999999985

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0174|consensus

Probab=99.80  E-value=8.6e-20  Score=137.38  Aligned_cols=107  Identities=19%  Similarity=0.281  Sum_probs=95.7

Q ss_pred             cccchhhHHHhhhcc-cc--cccccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKT-LA--LNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~-~~--~~~~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ++++...+|.|.+|. |-  +.+.+| |+ ..|+++|.+...|++.+.+++.-||||.|+++++|.+|+|+||+||++.+
T Consensus        97 ~aA~l~r~~~Y~~re~L~AgliVAGw-D~-~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~f  174 (224)
T KOG0174|consen   97 TAASLFREICYNYREMLSAGLIVAGW-DE-KEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRF  174 (224)
T ss_pred             HHHHHHHHHHHhCHHhhhcceEEeec-cc-ccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHH
Confidence            456677788888775 22  566666 97 77889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV  112 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l  112 (123)
                      +++|+..|++||..+|..+++.+|+++|++..
T Consensus       175 vk~Av~lAi~rDGsSGGviR~~~I~~~Gver~  206 (224)
T KOG0174|consen  175 VKNAVSLAIERDGSSGGVIRLVIINKAGVERR  206 (224)
T ss_pred             HHHHHHHHHhccCCCCCEEEEEEEccCCceEE
Confidence            99999999999999999999999999997654

>KOG0173|consensus

Probab=99.77  E-value=2.1e-18  Score=133.79  Aligned_cols=106  Identities=22%  Similarity=0.248  Sum_probs=93.5

Q ss_pred             hhhHHHh--hhcccccccccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q psy7294           8 SLTPILF--MNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCV   85 (123)
Q Consensus         8 ~~~~~~~--~~~~~~~~~~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i   85 (123)
                      ||-.+||  |-..=++..-+|+|  ..||+||.+-|.||....+|++.|||+..++++||..|+||||+|||++|+.+||
T Consensus       119 mlkQ~LFrYqG~IgA~LiiGGvD--~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi  196 (271)
T KOG0173|consen  119 MLKQHLFRYQGHIGAALILGGVD--PTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAI  196 (271)
T ss_pred             HHHHHHHHhcCcccceeEEcccc--CCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHH
Confidence            4445553  33444567788999  5799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccCCcEEEEEEcCCCeEEeecc
Q psy7294          86 HHMKRRTVLSYPKFTVKVLDRTGTVNVLQD  115 (123)
Q Consensus        86 ~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~  115 (123)
                      .+-+..|.-||+|+.++||++.+++.++..
T Consensus       197 ~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~  226 (271)
T KOG0173|consen  197 AAGIFNDLGSGSNVDLCVITKKGVEYLRNY  226 (271)
T ss_pred             HhhhccccCCCCceeEEEEeCCCccccccC
Confidence            999999999999999999998887776543

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=99.72  E-value=2.3e-17  Score=122.65  Aligned_cols=67  Identities=13%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             eEEEEECCCCceeee--CeEEEcccHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q psy7294          34 VTLYKGDPYGFMLEV--PYAYIGINGFLTASLVDKYYK-PDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKV  103 (123)
Q Consensus        34 P~Ly~iD~~Gs~~~~--~~~a~G~Gs~~~~~~Ld~~y~-~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~v  103 (123)
                      |+||++||.|++.+.  ++.|+||||.+++++||++|+ |+|   ||++|+++||+++.+||+.++++|+|-.
T Consensus       102 ~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~  171 (172)
T PRK05456        102 EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEE  171 (172)
T ss_pred             CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence            799999999999777  799999999999999999999 999   9999999999999999999999999865

>KOG0185|consensus

Probab=99.71  E-value=2.3e-17  Score=127.08  Aligned_cols=107  Identities=22%  Similarity=0.284  Sum_probs=94.7

Q ss_pred             cchhhHHHhhhccc--ccc-c--ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC---CCCCHHHH
Q psy7294           6 SNSLTPILFMNKTL--ALN-S--KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK---PDLTVQEA   77 (123)
Q Consensus         6 ~~~~~~~~~~~~~~--~~~-~--~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~---~~mt~eEA   77 (123)
                      .+||+-+||.||.-  ||. +  -+|+|. .+.|.|.++|..|..++.+.+|+|+|++++.|+|++.|+   ++++.|||
T Consensus       122 h~yltrvlY~rRsKmnPlwntlvVgGv~~-~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA  200 (256)
T KOG0185|consen  122 HSYLTRVLYARRSKMNPLWNTLVVGGVDN-TGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEA  200 (256)
T ss_pred             HHHHHHHHHHhhhccCchhhheeEeeecC-CCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHH
Confidence            36899999986543  332 2  457885 567999999999999999999999999999999999997   57999999


Q ss_pred             HHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294          78 YSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL  113 (123)
Q Consensus        78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~  113 (123)
                      .+|+.+||+.+.+||+.+.++|+|++||++|++...
T Consensus       201 ~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~  236 (256)
T KOG0185|consen  201 EALIEKCMRVLYYRDARASNEFQVATVDEEGVTISK  236 (256)
T ss_pred             HHHHHHHHHHHhccccccccceEEEEEcccceEecC
Confidence            999999999999999999999999999999986654

>KOG0176|consensus

Probab=99.69  E-value=1e-16  Score=121.26  Aligned_cols=85  Identities=24%  Similarity=0.262  Sum_probs=78.7

Q ss_pred             ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294          26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLD  105 (123)
Q Consensus        26 ~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~  105 (123)
                      |+|  ..||+||..||+|++.++++.|+|+||.-+.+.|+++|+++||++||+.++++.++.+++. .++.+|++|.+|+
T Consensus       145 G~D--~~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMee-Kl~~~Nvev~~vt  221 (241)
T KOG0176|consen  145 GHD--ETGPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEE-KLNSNNVEVAVVT  221 (241)
T ss_pred             ecc--CCCceEEEeCCCCceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH-hcCccceEEEEEc
Confidence            678  6799999999999999999999999999999999999999999999999999999999985 5999999999999


Q ss_pred             CCC-eEEee
Q psy7294         106 RTG-TVNVL  113 (123)
Q Consensus       106 kdG-~~~l~  113 (123)
                      ++| .+...
T Consensus       222 ~e~~f~~~t  230 (241)
T KOG0176|consen  222 PEGEFHIYT  230 (241)
T ss_pred             ccCceEecC
Confidence            984 55543

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=99.64  E-value=1e-15  Score=113.90  Aligned_cols=89  Identities=13%  Similarity=0.036  Sum_probs=74.9

Q ss_pred             hhHHHhhhcccccc-cccceeCCCCceEEEEECCCCceeeeC--eEEEcccHHHHHHHHHccCCCC-CCHHHHHHHHHHH
Q psy7294           9 LTPILFMNKTLALN-SKKWTDCNTFGVTLYKGDPYGFMLEVP--YAYIGINGFLTASLVDKYYKPD-LTVQEAYSVLKQC   84 (123)
Q Consensus         9 ~~~~~~~~~~~~~~-~~~~~D~~~~gP~Ly~iD~~Gs~~~~~--~~a~G~Gs~~~~~~Ld~~y~~~-mt~eEAi~L~~k~   84 (123)
                      |+..++..|++|+. +.....   +.|+||.+||.|++.+.+  +.++||||.+++++||.+|+++ ||   +.+|+.+|
T Consensus        78 l~~~l~~~~~~~~l~a~~iv~---~~~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la~~A  151 (171)
T cd01913          78 LAKDWRTDRYLRRLEAMLIVA---DKEHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIARKA  151 (171)
T ss_pred             HHHHHHhccCcCceEEEEEEe---CCCcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHHHHH
Confidence            34555566888765 444433   146999999999999995  9999999999999999999995 99   55999999


Q ss_pred             HHHHHhcccccCCcEEEEE
Q psy7294          85 VHHMKRRTVLSYPKFTVKV  103 (123)
Q Consensus        85 i~~a~~Rd~~s~~~~~V~v  103 (123)
                      |+.|.+||+.++++|.|-.
T Consensus       152 v~~A~~rd~~tg~~i~~~~  170 (171)
T cd01913         152 LKIAADICIYTNHNITVEE  170 (171)
T ss_pred             HHHHHhhCcccCCCEEEEe
Confidence            9999999999999999865

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=99.61  E-value=2.8e-15  Score=111.58  Aligned_cols=68  Identities=16%  Similarity=0.139  Sum_probs=63.4

Q ss_pred             ceEEEEECCCCceeee--CeEEEcccHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q psy7294          33 GVTLYKGDPYGFMLEV--PYAYIGINGFLTASLVDKYY-KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKV  103 (123)
Q Consensus        33 gP~Ly~iD~~Gs~~~~--~~~a~G~Gs~~~~~~Ld~~y-~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~v  103 (123)
                      .|+||.+||.|++.+.  ++.++||||.+++++||.+| +++|+   |++|+.+|++.|.+||+.++++|.|-.
T Consensus       100 ~~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~  170 (171)
T TIGR03692       100 KETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE  170 (171)
T ss_pred             CCCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence            3699999999999996  69999999999999999999 57787   999999999999999999999999864

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>KOG0181|consensus

Probab=99.53  E-value=2.4e-14  Score=108.25  Aligned_cols=86  Identities=19%  Similarity=0.213  Sum_probs=80.0

Q ss_pred             ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294          26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLD  105 (123)
Q Consensus        26 ~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~  105 (123)
                      |+|  .++|.||++||+|+++.|+++|+|-+..-+..|||+.|+++|.+++|++.+.-.+++..+.. .+.++++|+|+.
T Consensus       138 G~~--~~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege-~~~~nieigv~~  214 (233)
T KOG0181|consen  138 GWD--EGGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGE-MTAKNIEIGVCG  214 (233)
T ss_pred             ecC--CCceeEEEECCccceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccc-cccCceEEEEec
Confidence            457  56899999999999999999999999999999999999999999999999999999998864 899999999999


Q ss_pred             CCCeEEeec
Q psy7294         106 RTGTVNVLQ  114 (123)
Q Consensus       106 kdG~~~l~~  114 (123)
                      .++++.+..
T Consensus       215 ~~~F~~lt~  223 (233)
T KOG0181|consen  215 ENGFRRLTP  223 (233)
T ss_pred             CCceeecCH
Confidence            999988864

>KOG0183|consensus

Probab=99.50  E-value=5.6e-14  Score=107.46  Aligned_cols=94  Identities=17%  Similarity=0.177  Sum_probs=81.5

Q ss_pred             ccccccc-ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCC--CCHHHHHHHHHHHHHHHHhccc
Q psy7294          17 KTLALNS-KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPD--LTVQEAYSVLKQCVHHMKRRTV   93 (123)
Q Consensus        17 ~~~~~~~-~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~--mt~eEAi~L~~k~i~~a~~Rd~   93 (123)
                      |-+..++ -+|||+ ++-|.||++||+|.+++|++.|+|.+|..+..+||++|.+.  .|..|+++|+.+++.++..   
T Consensus       126 RPFGvs~Li~GfD~-~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvq---  201 (249)
T KOG0183|consen  126 RPFGVSTLIGGFDP-DGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQ---  201 (249)
T ss_pred             ccccceEEEEeeCC-CCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhh---
Confidence            3333444 458998 66799999999999999999999999999999999999877  8899999999999998876   


Q ss_pred             ccCCcEEEEEEcCCC-eEEeec
Q psy7294          94 LSYPKFTVKVLDRTG-TVNVLQ  114 (123)
Q Consensus        94 ~s~~~~~V~vI~kdG-~~~l~~  114 (123)
                      .++.|++++|+++++ .+.++.
T Consensus       202 s~~~nie~aVm~~~~~~~~l~~  223 (249)
T KOG0183|consen  202 SGGKNIEVAVMKRRKDLKMLES  223 (249)
T ss_pred             cCCCeeEEEEEecCCceeecCH
Confidence            789999999999887 776653

>KOG0180|consensus

Probab=99.45  E-value=4.2e-13  Score=99.87  Aligned_cols=105  Identities=13%  Similarity=0.151  Sum_probs=97.0

Q ss_pred             cchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceee-eCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294           6 SNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLE-VPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL   81 (123)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~-~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~   81 (123)
                      |+|.|++||+.|+=||-++   .|.|+ +++|++...|..|+... .++++.|.++...++..|..|+|||..||-.+.+
T Consensus        88 s~mvS~~lYekRfgpYf~~PvVAGl~~-~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFeti  166 (204)
T KOG0180|consen   88 SSMVSSLLYEKRFGPYFTEPVVAGLDD-DNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETI  166 (204)
T ss_pred             HHHHHHHHHHhhcCCcccceeEeccCC-CCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            6799999999999999885   37787 88999999999998764 5599999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294          82 KQCVHHMKRRTVLSYPKFTVKVLDRTGTVN  111 (123)
Q Consensus        82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~  111 (123)
                      -+|+..+..||++||=+..|.||+||.+.+
T Consensus       167 sQa~Lna~DRDalSGwGa~vyiI~kdkv~~  196 (204)
T KOG0180|consen  167 SQALLNAVDRDALSGWGAVVYIITKDKVTK  196 (204)
T ss_pred             HHHHHhHhhhhhhccCCeEEEEEccchhhh
Confidence            999999999999999999999999998644

>KOG0178|consensus

Probab=99.38  E-value=1.6e-12  Score=99.38  Aligned_cols=92  Identities=24%  Similarity=0.281  Sum_probs=82.2

Q ss_pred             ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCC-HHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLT-VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        26 ~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt-~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      |||. ..|-+||+.||+|++-.|++.++|..+..+++.|.+.|+++.+ .+||.+++.+.+.-...+..++.+.+||+.|
T Consensus       138 Gwd~-~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~  216 (249)
T KOG0178|consen  138 GWDD-RYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATI  216 (249)
T ss_pred             ceec-CcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEE
Confidence            4585 6789999999999999999999999999999999999998865 9999999999999999999999999999999


Q ss_pred             cCCCeEEeeccccc
Q psy7294         105 DRTGTVNVLQDLKY  118 (123)
Q Consensus       105 ~kdG~~~l~~~~k~  118 (123)
                      ++++.+..-.++|.
T Consensus       217 ~k~~~k~v~~i~~~  230 (249)
T KOG0178|consen  217 TKDCNKTVLKILKK  230 (249)
T ss_pred             EecCCceEEEecCH
Confidence            99976654445544

>KOG0182|consensus

Probab=99.22  E-value=6.1e-11  Score=90.79  Aligned_cols=86  Identities=21%  Similarity=0.256  Sum_probs=78.7

Q ss_pred             ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCC--CCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q psy7294          26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPD--LTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKV  103 (123)
Q Consensus        26 ~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~--mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~v  103 (123)
                      +||+ ..||.+|.+||.|-+...++++.|--..-+.++||+.|+++  +|.+|+++++..|+..+..-| +..+.+||++
T Consensus       142 ~~D~-E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~D-fk~se~EVgv  219 (246)
T KOG0182|consen  142 GVDE-ERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGID-FKSSELEVGV  219 (246)
T ss_pred             Eecc-ccCcceEeecCccccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcc-cCCcceEEEE
Confidence            6896 77899999999999999999999999999999999999987  889999999999999998766 7889999999


Q ss_pred             EcCCC--eEEee
Q psy7294         104 LDRTG--TVNVL  113 (123)
Q Consensus       104 I~kdG--~~~l~  113 (123)
                      ++++.  .+.|+
T Consensus       220 v~~~~p~f~~Ls  231 (246)
T KOG0182|consen  220 VTVDNPEFRILS  231 (246)
T ss_pred             EEcCCcceeecc
Confidence            99875  66665

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=99.19  E-value=1e-10  Score=82.04  Aligned_cols=79  Identities=27%  Similarity=0.326  Sum_probs=65.1

Q ss_pred             cchhhHHHhhhcc-ccccc---ccceeCCCCceEEEEECCCCceeee-CeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           6 SNSLTPILFMNKT-LALNS---KKWTDCNTFGVTLYKGDPYGFMLEV-PYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         6 ~~~~~~~~~~~~~-~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~-~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ++.++.+++.++. .|+.+   =.++|+  ++|+||.+||.|++.+. .++++|+++.++.++|++.|+++|+.+||+++
T Consensus        80 ~~~~~~~~~~~~~~~p~~~~~iiag~~~--~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~  157 (164)
T cd01901          80 AKELAKLLQVYTQGRPFGVNLIVAGVDE--GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL  157 (164)
T ss_pred             HHHHHHHHHHhcCCCCcceEEEEEEEcC--CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence            4556666666543 33333   234573  68999999999999999 99999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy7294          81 LKQCVH   86 (123)
Q Consensus        81 ~~k~i~   86 (123)
                      +.+|+.
T Consensus       158 ~~~~l~  163 (164)
T cd01901         158 ALKALK  163 (164)
T ss_pred             HHHHHh
Confidence            999985

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>KOG0863|consensus

Probab=98.83  E-value=1.4e-08  Score=78.77  Aligned_cols=86  Identities=14%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHHHh-cccccCCcEEE
Q psy7294          25 KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK--PDLTVQEAYSVLKQCVHHMKR-RTVLSYPKFTV  101 (123)
Q Consensus        25 ~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~--~~mt~eEAi~L~~k~i~~a~~-Rd~~s~~~~~V  101 (123)
                      .|||  +.||+||++.|+|++.+.+..++|+-|+-+..+||.+..  ++++.||-|..+..||+...- .+.+++.+++|
T Consensus       135 ~gYD--e~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI  212 (264)
T KOG0863|consen  135 AGYD--ESGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSI  212 (264)
T ss_pred             Eeec--CCCceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEE
Confidence            3899  678999999999999999999999999999999999764  589999999999999998865 44799999999


Q ss_pred             EEEcCCC-eEEe
Q psy7294         102 KVLDRTG-TVNV  112 (123)
Q Consensus       102 ~vI~kdG-~~~l  112 (123)
                      .||-||. +..+
T Consensus       213 ~Ivgkd~pf~~~  224 (264)
T KOG0863|consen  213 AIVGKDEPFTIL  224 (264)
T ss_pred             EEEeCCCceEee
Confidence            9999985 4444

>KOG0184|consensus

Probab=98.39  E-value=6.4e-07  Score=69.25  Aligned_cols=77  Identities=17%  Similarity=0.124  Sum_probs=63.2

Q ss_pred             ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEE--EEE
Q psy7294          26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFT--VKV  103 (123)
Q Consensus        26 ~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~--V~v  103 (123)
                      .||  ++||+||.+||+|....++.+|+|-|.+.+..-||+.--.+||.+|+++-+-+-|-.+.  |-..-..|+  +..
T Consensus       140 ~yd--~~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~H--De~KdK~feiEm~w  215 (254)
T KOG0184|consen  140 SYD--DEGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVH--DENKDKEFEIEMGW  215 (254)
T ss_pred             EEe--CCCceEEEEcCCCCccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeec--ccccCcceEEEEEE
Confidence            478  78999999999999999999999999999999999987789999999988777765553  345555555  444


Q ss_pred             EcC
Q psy7294         104 LDR  106 (123)
Q Consensus       104 I~k  106 (123)
                      |..
T Consensus       216 vg~  218 (254)
T KOG0184|consen  216 VGE  218 (254)
T ss_pred             EEe
Confidence            543

>KOG3361|consensus

Probab=95.14  E-value=0.052  Score=39.38  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=41.1

Q ss_pred             EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294          38 KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus        38 ~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      .+|-.|.+...+|-..|-||..+-+-+-.+|-.++|.|||.++
T Consensus        72 kvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI  114 (157)
T KOG3361|consen   72 KVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI  114 (157)
T ss_pred             EECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence            6889999999999999999999999999999999999999876

>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.67  E-value=0.2  Score=38.21  Aligned_cols=70  Identities=9%  Similarity=0.161  Sum_probs=54.9

Q ss_pred             EECCCCceeeeCeEEEccc---------HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q psy7294          38 KGDPYGFMLEVPYAYIGIN---------GFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT  107 (123)
Q Consensus        38 ~iD~~Gs~~~~~~~a~G~G---------s~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd  107 (123)
                      -+|-.|+-....-...|+|         -..+...|.++|++.|+.+++.+++.++|+.+...-..-++.+.+..+++.
T Consensus       102 Ivei~~~~i~~~~~g~~sgiIVfGNk~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~  180 (194)
T PF09894_consen  102 IVEIENDEITNKSRGEGSGIIVFGNKFTKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK  180 (194)
T ss_pred             EEEecCCeEEEEecCCceeEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence            3455565555555444542         467888899999999999999999999999998887788899998887654

They do show distant similarity to NTPases and to nucleic acid binding enzymes.

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.00  E-value=0.31  Score=36.41  Aligned_cols=69  Identities=13%  Similarity=0.120  Sum_probs=54.1

Q ss_pred             eEEEEECCCCcee-eeC-eEEEcccHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294          34 VTLYKGDPYGFML-EVP-YAYIGINGFLTASLVDKYYKP-DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLD  105 (123)
Q Consensus        34 P~Ly~iD~~Gs~~-~~~-~~a~G~Gs~~~~~~Ld~~y~~-~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~  105 (123)
                      -.++-+...|-.. +.. ..|+|||..|+++-....++. ++|   |.+++++++..+.+=++++..+|.|-.+.
T Consensus       105 ~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~  176 (178)
T COG5405         105 THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---AREIAEKSLKIAGDICIYTNHNIVVEELR  176 (178)
T ss_pred             CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence            3577777777444 444 899999999999988887753 665   56789999999998888888888887764

>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]

Probab=92.29  E-value=0.24  Score=38.44  Aligned_cols=77  Identities=16%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             ceEEEEECCCCceeee----CeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q psy7294          33 GVTLYKGDPYGFMLEV----PYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG  108 (123)
Q Consensus        33 gP~Ly~iD~~Gs~~~~----~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG  108 (123)
                      -|.||.+=|.|++.+.    +|.-+|- +-+-.|+||..++-++.+|||.+.++-.+.+-.+-.+.-|--+.+-+..+|-
T Consensus       124 pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds  202 (255)
T COG3484         124 PPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS  202 (255)
T ss_pred             CceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence            4799999999999864    4666664 4567899999999999999999999989988888777778888888888886


Q ss_pred             eE
Q psy7294         109 TV  110 (123)
Q Consensus       109 ~~  110 (123)
                      .+
T Consensus       203 ~~  204 (255)
T COG3484         203 FS  204 (255)
T ss_pred             ee
Confidence            43

>COG4079 Uncharacterized protein conserved in archaea [Function unknown]

Probab=84.70  E-value=3.7  Score=32.77  Aligned_cols=51  Identities=8%  Similarity=0.123  Sum_probs=45.1

Q ss_pred             HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q psy7294          57 GFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT  107 (123)
Q Consensus        57 s~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd  107 (123)
                      -..+..+|.++|.+.++++++.+++..||..+......-++.+.+..++++
T Consensus       131 Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~  181 (293)
T COG4079         131 KEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN  181 (293)
T ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence            456788899999999999999999999999999877788899999988765

>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]

Probab=82.12  E-value=4.5  Score=29.44  Aligned_cols=37  Identities=27%  Similarity=0.343  Sum_probs=33.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q psy7294          69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT  109 (123)
Q Consensus        69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~  109 (123)
                      ++.+|.|+|.+++..++.++.+    .+-.+.|.|||..|.
T Consensus         5 ~~~Ls~e~a~~ii~aA~a~a~~----~g~~VtvaVVD~~G~   41 (141)
T COG3193           5 KPVLSLELANKIIAAAVAEAQQ----LGVPVTVAVVDAGGH   41 (141)
T ss_pred             ccccCHHHHHHHHHHHHHHHHH----hCCceEEEEECCCCC
Confidence            4679999999999999999986    389999999999994

>PRK09732 hypothetical protein; Provisional

Probab=81.45  E-value=4.9  Score=28.74  Aligned_cols=38  Identities=16%  Similarity=0.140  Sum_probs=32.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294          70 PDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN  111 (123)
Q Consensus        70 ~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~  111 (123)
                      +.||.+.|.+++..++.++.+.    +-.+.|.|||..|.-.
T Consensus         5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~   42 (134)
T PRK09732          5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLL   42 (134)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEE
Confidence            5699999999999999999873    4589999999999543

>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT

Probab=80.99  E-value=3.1  Score=29.04  Aligned_cols=39  Identities=23%  Similarity=0.409  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294          70 PDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV  112 (123)
Q Consensus        70 ~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l  112 (123)
                      |.+|.++|.+++..+++.+.++    +-.+.|.|||..|....
T Consensus         1 p~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~~   39 (132)
T PF03928_consen    1 PSLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHLLA   39 (132)
T ss_dssp             EEE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-EEE
T ss_pred             CCcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCEEE
Confidence            3578999999999999999874    34488999999996554

The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	1e-13
1iru_K	201	20S proteasome; cell cycle, immune response, prote	6e-13
1iru_N	219	20S proteasome; cell cycle, immune response, prote	5e-09
1iru_I	234	20S proteasome; cell cycle, immune response, prote	6e-09
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	1e-07
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	3e-07
1iru_L	204	20S proteasome; cell cycle, immune response, prote	6e-06
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	7e-06
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	1e-05
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	2e-05
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	2e-05
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	2e-05
1iru_M	213	20S proteasome; cell cycle, immune response, prote	3e-05
1iru_J	205	20S proteasome; cell cycle, immune response, prote	3e-05
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	4e-05
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	4e-05
1iru_H	205	20S proteasome; cell cycle, immune response, prote	9e-05
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	2e-04
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	2e-04
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	3e-04
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	4e-04
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	4e-04

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score = 63.0 bits (154), Expect = 1e-13
 Identities = 30/85 (35%), Positives = 48/85 (56%)

Query: 28  DCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87
           D       LY+ D  G  +E+PY   G +GF T SL+D +Y+PD+T +E   +LK CV  
Sbjct: 108 DKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQE 167

Query: 88  MKRRTVLSYPKFTVKVLDRTGTVNV 112
           +++R  + +    VK++D+ G   V
Sbjct: 168 LEKRMPMDFKGVIVKIVDKDGIRQV 192

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score = 61.5 bits (150), Expect = 6e-13
 Identities = 25/85 (29%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLS 95
           LY  D    + + P+A  G   FLT S++D+YY P ++ + A  +L++C+  +++R +L+
Sbjct: 115 LYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILN 174

Query: 96  YPKFTVKVLDRTGTVNVLQDLKYSD 120
            P F+V+++D+ G ++ L ++ +  
Sbjct: 175 LPTFSVRIIDKNG-IHDLDNISFPK 198

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK--PDLTVQEAYSVLKQCVHHMKRRTV 93
           L   D  G   E P    G   +L   L+ +  +  P L+  EA  ++++C+  +  R  
Sbjct: 122 LGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDA 181

Query: 94  LSYPKFTVKVLDRTGT 109
            SY +F    +   G 
Sbjct: 182 RSYNRFQTATVTEKGV 197

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 14/77 (18%), Positives = 34/77 (44%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
           G  LY   P+G   ++PY  +G       ++ +  ++PD+  +EA +++ + +       
Sbjct: 107 GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFND 166

Query: 93  VLSYPKFTVKVLDRTGT 109
           + S     + V+ +   
Sbjct: 167 LGSGSNIDLCVISKNKL 183

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK-----PDLTVQEAYSVLKQCVHHMKR 90
           L   +  G     P    G    +   L+ K        P  TVQ A   +   +  +  
Sbjct: 160 LRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYY 219

Query: 91  RTVLSYPKFTVKVLDRTGTVNVLQDLKYSDFK 122
           R   S   F++ ++D+   +   ++L+  + K
Sbjct: 220 RDARSSRNFSLAIIDKNTGLTFKKNLQVENMK 251

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK-----PDLTVQEAYSVLKQCVHHMKR 90
           L   +  G     P    G    +   L+ K        P  TVQ A   +   +  +  
Sbjct: 127 LRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYY 186

Query: 91  RTVLSYPKFTVKVLDRTGTVNVLQDLKYSDFK 122
           R   S   F++ ++D+   +   ++L+  + K
Sbjct: 187 RDARSSRNFSLAIIDKNTGLTFKKNLQVENMK 218

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91
           G  LY  D  G  +      +G +G + A  ++D+ Y  DL V++AY + ++ ++    R
Sbjct: 108 GPGLYYVDSEGNRISGATFSVG-SGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYR 166

Query: 92  TVLSYPKFTVKVLDRTGTVNVLQD 115
              S     +  +   G + V  D
Sbjct: 167 DAYSGGAVNLYHVREDGWIRVSSD 190

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 14/74 (18%), Positives = 28/74 (37%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLS 95
           +Y     G + ++PYA  G          DK ++ +++ +E    +K  +    +    S
Sbjct: 119 VYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSS 178

Query: 96  YPKFTVKVLDRTGT 109
                + VL   G 
Sbjct: 179 GGVIRMVVLTAAGV 192

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVL 94
           L+    +G      Y  +G +G L A ++++ ++K DLT +EA  +    +       + 
Sbjct: 139 LFSIHAHGSTDVGYYLSLG-SGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLG 197

Query: 95  SYPKFTVKVLDRTGTVNVLQDLKYSDFK 122
           S     V V++       L++    + +
Sbjct: 198 SGSNVDVCVMEIGKDAEYLRNYLTPNVR 225

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 36  LYKGDPYGFMLEVPYAY-IGINGFLTASLVDKYYKPDLTVQEAYS----VLKQCVHHMKR 90
           LY+    G +++  +   +G      A+ + + Y+ DL ++ A       L+Q       
Sbjct: 138 LYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGE 197

Query: 91  RTVLSYPKFTVKVLDRTGT 109
           +  +      V VLD++  
Sbjct: 198 KRNVDVASLEVAVLDQSRP 216

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91
           G  L+    +G      Y  +G +G L A ++++ ++K DLT +EA  +    +      
Sbjct: 107 GSHLFSIHAHGSTDVGYYLSLG-SGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWN 165

Query: 92  TVLSYPKFTVKVLDRTGTVNVLQDLKYSDFK 122
            + S     V V++       L++    + +
Sbjct: 166 DLGSGSNVDVCVMEIGKDAEYLRNYLTPNVR 196

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 26  WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQC 84
           +T     G T+Y  D  G  L+     +G +G   A  ++D  YK DL+V++A  + K+ 
Sbjct: 179 YTRKE--GPTIYYVDSDGTRLKGDIFCVG-SGQTFAYGVLDSNYKWDLSVEDALYLGKRS 235

Query: 85  VHH 87
           +  
Sbjct: 236 ILA 238

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 9/91 (9%)

Query: 36  LYKGDPYGFMLEVPYAYIG-----INGFLTASLVDKY----YKPDLTVQEAYSVLKQCVH 86
           +Y  DP G      +   G     +   L   +  K         L++  A  ++K    
Sbjct: 121 VYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFI 180

Query: 87  HMKRRTVLSYPKFTVKVLDRTGTVNVLQDLK 117
               R V +     + ++ + G       L+
Sbjct: 181 SAAERDVYTGDALRICIVTKEGIREETVSLR 211

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 12/70 (17%)

Query: 28  DCNTFGVTLYKGDPYGFMLE-VPYAYIG-----INGFLTASLVDKYYKPDLTVQEAYSVL 81
           D  TF   +   D  G  +    +   G     + G       +  ++P++     +  +
Sbjct: 113 DPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMC-----ESLWEPNMDPDHLFETI 167

Query: 82  KQCVHH-MKR 90
            Q + + + R
Sbjct: 168 SQAMLNAVDR 177

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91
           G  LY+  P+G    +P+  +G +G   A +L++  ++P++T++ A  +L + +      
Sbjct: 107 GPQLYEVHPHGSYSRLPFTALG-SGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILS 165

Query: 92  TVLSYPKFTVKVLDRTGT 109
            + S       V+   G 
Sbjct: 166 DLGSGGNVDACVITAGGA 183

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 26  WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQC 84
           +T     G T+Y  D  G  L+     +G +G   A  ++D  YK DL+V++A  + K+ 
Sbjct: 104 YTRKE--GPTIYYVDSDGTRLKGDIFCVG-SGQTFAYGVLDSNYKWDLSVEDALYLGKRS 160

Query: 85  VHH 87
           +  
Sbjct: 161 ILA 163

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 10/57 (17%)

Query: 36  LYKGDPYGFMLEVPYAYIG-----INGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87
           +Y     G M+   +A  G     I G++     D  Y+  +T +E        +  
Sbjct: 111 VYSVPMGGMMVRQSFAIGGSGSSYIYGYV-----DATYREGMTKEECLQFTANALAL 162

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHH-MKR 90
           ++  D  G  +E  YA  G +G      +++  Y   +TV E   ++ + +    +R
Sbjct: 118 VFSIDAAGGSVEDIYASTG-SGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQR 173

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 14/126 (11%)

Query: 1   MLRQNSNSLTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLE--VPYAYIGINGF 58
           M+R N  +    L +   L        D +     +   D  G   E    Y  +G    
Sbjct: 86  MVRGNLGAAMQGLAVVPLLVGYDLDADDESR-AGRIVSYDVVGGRYEERAGYHAVGSGSL 144

Query: 59  LTASLVDKYYKPDLTVQEAYSVLKQCVHH-MKR--------RTVLSYPKFTVKVLDRTGT 109
              S + K Y PD   + A     + ++              T   YP  T   + + G 
Sbjct: 145 FAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYP--TAVTITQAGA 202

Query: 110 VNVLQD 115
           V+V ++
Sbjct: 203 VHVSEE 208

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 10/60 (16%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASL-----VDKYYKPDLTVQEAYSVLKQCVHH 87
                 G   G ++  P+   G     + S      VD  YKP +T +E        +  
Sbjct: 107 EGGQVYGTMGGMLIRQPFTIGG-----SGSSYIYGYVDAAYKPGMTPEECRRFTTNAITL 161

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 16/127 (12%)

Query: 1   MLRQNSNSLTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLE--VPYAYIGINGF 58
           M+R N  +    L +   L        D +     +   D  G   E    Y  +G +G 
Sbjct: 151 MVRGNLGAAMQGLAVVPLLVGYDLDADDESR-AGRIVSYDVVGGRYEERAGYHAVG-SGS 208

Query: 59  LTA-SLVDKYYKPDLTVQEAYSVLKQCVHH-MKR--------RTVLSYPKFTVKVLDRTG 108
           L A S + K Y PD   + A     + ++              T   YP  T   + + G
Sbjct: 209 LFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYP--TAVTITQAG 266

Query: 109 TVNVLQD 115
            V+V ++
Sbjct: 267 AVHVSEE 273

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 28  DCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVH 86
           +  +    +   D  G + E   +   G        + +  Y+P+L  ++ +  + Q + 
Sbjct: 112 NSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALL 171

Query: 87  HMKRRTVLSYPKFTVKVLDRTGTV 110
           +   R  LS     V ++ +   V
Sbjct: 172 NAADRDALSGWGAVVYIIKKDEVV 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	99.94
1iru_M	213	20S proteasome; cell cycle, immune response, prote	99.93
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	99.93
1iru_J	205	20S proteasome; cell cycle, immune response, prote	99.93
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	99.93
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	99.93
1iru_L	204	20S proteasome; cell cycle, immune response, prote	99.92
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	99.92
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	99.92
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	99.91
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	99.91
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	99.91
1iru_N	219	20S proteasome; cell cycle, immune response, prote	99.91
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	99.91
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	99.91
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	99.9
1iru_K	201	20S proteasome; cell cycle, immune response, prote	99.9
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	99.9
1iru_H	205	20S proteasome; cell cycle, immune response, prote	99.9
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	99.89
1iru_B	233	20S proteasome; cell cycle, immune response, prote	99.89
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	99.89
1iru_I	234	20S proteasome; cell cycle, immune response, prote	99.89
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	99.89
1iru_A	246	20S proteasome; cell cycle, immune response, prote	99.88
1iru_C	261	20S proteasome; cell cycle, immune response, prote	99.88
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	99.88
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	99.88
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	99.87
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	99.87
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	99.87
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	99.86
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	99.86
1iru_E	241	20S proteasome; cell cycle, immune response, prote	99.86
1iru_G	254	20S proteasome; cell cycle, immune response, prote	99.86
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	99.86
1iru_F	263	20S proteasome; cell cycle, immune response, prote	99.86
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	99.85
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	99.85
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	99.85
1iru_D	248	20S proteasome; cell cycle, immune response, prote	99.84
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	99.84
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	99.84
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	99.83
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	99.82
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	99.77
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	99.76
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	99.73

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=99.94  E-value=3.8e-26  Score=172.82  Aligned_cols=115  Identities=14%  Similarity=0.165  Sum_probs=106.0

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHcc-------------
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKY-------------   67 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~-------------   67 (123)
                      ..+++|++++|.+|..||.+..   |+|+ +++|+||++||.|++.+++++|+|+|+.+++++||+.             
T Consensus        88 ~la~~l~~~ly~~r~~P~~v~~ivaG~D~-~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~  166 (222)
T 1ryp_M           88 SAARNIQHLLYGKRFFPYYVHTIIAGLDE-DGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNG  166 (222)
T ss_dssp             HHHHHHHHHHHTTTTSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTT
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEEEEEcC-CCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccccccccc
Confidence            3567899999999888987754   6795 5569999999999999999999999999999999998             


Q ss_pred             ----CCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294          68 ----YKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS  119 (123)
Q Consensus        68 ----y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~  119 (123)
                          |+++||+|||++|+++||.++.+||+.++++++|.+|+++|++.....+|.|
T Consensus       167 ~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r~d  222 (222)
T 1ryp_M          167 KVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD  222 (222)
T ss_dssp             CSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEeeccCC
Confidence                8899999999999999999999999999999999999999999999888875

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=99.93  E-value=7.4e-26  Score=169.58  Aligned_cols=115  Identities=16%  Similarity=0.172  Sum_probs=105.6

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHcc---------CCCC
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKY---------YKPD   71 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~---------y~~~   71 (123)
                      ..+++|++++|.++..||.+..   |+|+ +++|+||++||+|++.+++++|+|+|+.+++++||+.         |+++
T Consensus        87 ~la~~l~~~~y~~r~~P~~v~~lvaG~D~-~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~  165 (213)
T 1iru_M           87 AIAAMLSTILYSRRFFPYYVYNIIGGLDE-EGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVP  165 (213)
T ss_dssp             HHHHHHHHHHHHTTTSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCC
T ss_pred             HHHHHHHHHHHhhCCCCceEEEEEEEEcC-CCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCC
Confidence            4567899999998888988754   6795 5569999999999999999999999999999999999         8899


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294          72 LTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS  119 (123)
Q Consensus        72 mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~  119 (123)
                      ||.|||++++++||.++.+||+.++++++|.+|+++|++.....+|.|
T Consensus       166 ~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d  213 (213)
T 1iru_M          166 LSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD  213 (213)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEeecCCC
Confidence            999999999999999999999999999999999999999998888865

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=1.4e-25  Score=169.46  Aligned_cols=110  Identities=18%  Similarity=0.253  Sum_probs=102.3

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAYS   79 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~   79 (123)
                      ..+++|++++++++..||.+..   |||+ .+||+||++||+|++.+++ ++|+|+|+.+++++||+.|+++||.|||++
T Consensus        79 ~la~~l~~~~~~~~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~  157 (219)
T 3h4p_a           79 ACATLLSNILHSSRMFPFLTQIIIGGYDL-LEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIK  157 (219)
T ss_dssp             HHHHHHHHHHHHTTTTTCCCCCEEEEEET-TTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEEEEeC-CCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            4578899999998888988754   6895 5789999999999999999 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      ++++||..+.+||..++++++|++|+++|++.++.
T Consensus       158 la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~  192 (219)
T 3h4p_a          158 LALNALKSAMERDTFSGNGISLAVITKDGVKIFED  192 (219)
T ss_dssp             HHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCH
T ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCH
Confidence            99999999999999999999999999999998864

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=99.93  E-value=3.7e-25  Score=164.89  Aligned_cols=116  Identities=10%  Similarity=0.151  Sum_probs=104.3

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeee-CeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEV-PYAYIGINGFLTASLVDKYYKPDLTVQEAYS   79 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~-~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~   79 (123)
                      ..+++|++++|.++..||.+..   |||+.++||+||++||+|++.++ +++|+|+|+.+++++||+.|+++||.|||++
T Consensus        86 ~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~  165 (205)
T 1iru_J           86 TLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFE  165 (205)
T ss_dssp             HHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHH
Confidence            3578899999998877887744   67954568999999999999665 5699999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS  119 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~  119 (123)
                      ++++||.++.+||+.++++++|.+|+++|++.....+|.|
T Consensus       166 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d  205 (205)
T 1iru_J          166 TISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD  205 (205)
T ss_dssp             HHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred             HHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecCCC
Confidence            9999999999999999999999999999999988888865

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=99.93  E-value=4.4e-25  Score=164.38  Aligned_cols=116  Identities=12%  Similarity=0.124  Sum_probs=104.3

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeee-CeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEV-PYAYIGINGFLTASLVDKYYKPDLTVQEAYS   79 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~-~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~   79 (123)
                      ..++++++++|.++..||.+..   |||+.++||+||++||+|++.++ +++|+|+|+.+++++||+.|+++||.|||++
T Consensus        85 ~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~  164 (204)
T 1ryp_J           85 TFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFE  164 (204)
T ss_dssp             HHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHH
Confidence            3578899999998877887754   67954578999999999999666 5799999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS  119 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~  119 (123)
                      ++++||..+.+||+.++++++|.+|+++|++.....+|.|
T Consensus       165 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d  204 (204)
T 1ryp_J          165 TISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD  204 (204)
T ss_dssp             HHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeecCCC
Confidence            9999999999999999999999999999999988888865

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=99.93  E-value=3e-25  Score=165.05  Aligned_cols=110  Identities=15%  Similarity=0.174  Sum_probs=101.2

Q ss_pred             ccccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           3 RQNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      ++.+++|++++++++.+||.+..   |||+  +||+||++||+|++.+++ ++|+|+|+.+++++||+.|+++||.|||+
T Consensus        77 ~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~  154 (202)
T 1j2q_H           77 RAIATLTSNLLNSYRYFPYLVQLLIGGIDS--EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAV  154 (202)
T ss_dssp             HHHHHHHHHHHHHTTTSCCCEEEEEEEEET--TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCceEEEEEEEEeC--CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHH
Confidence            34578899999998888988754   6794  689999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      +++++||..+.+||..++++++|.+|+++|++.++.
T Consensus       155 ~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~  190 (202)
T 1j2q_H          155 ELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSP  190 (202)
T ss_dssp             HHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHH
T ss_pred             HHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCH
Confidence            999999999999999999999999999999888753

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=99.92  E-value=1e-24  Score=162.35  Aligned_cols=109  Identities=20%  Similarity=0.240  Sum_probs=99.9

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ..+++++++++.++..||.+..   |||+  +||+||++||+|++.++++.|+|+|+.+++++||+.|+++||.|||+++
T Consensus        78 ~la~~l~~~~~~~r~~~~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l  155 (204)
T 1iru_L           78 AASKLLANMVYQYKGMGLSMGTMICGWDK--RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDL  155 (204)
T ss_dssp             HHHHHHHHHHHTTTTSCCCBEEEEEEECS--SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCeeEEEEEEEEeC--CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHH
Confidence            3568899999998888887643   6794  6899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      +++||..+.+||+.++++++|.+|+++|++.++.
T Consensus       156 ~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~  189 (204)
T 1iru_L          156 ARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSS  189 (204)
T ss_dssp             HHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEE
T ss_pred             HHHHHHHHHHhCccCCCceEEEEEeCCceEEeCH
Confidence            9999999999999999999999999999887753

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=99.92  E-value=9.8e-25  Score=161.67  Aligned_cols=111  Identities=29%  Similarity=0.454  Sum_probs=98.8

Q ss_pred             cccchhhHHHhhh-cc-ccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           4 QNSNSLTPILFMN-KT-LALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         4 ~~~~~~~~~~~~~-~~-~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      ..++++++++++. +. .||.+..   |||+.++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+
T Consensus        79 ~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~  158 (198)
T 1ryp_K           79 AVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL  158 (198)
T ss_dssp             HHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHH
Confidence            3567888888774 23 3877744   67953468999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      +++++|+.++.+||+.++++++|.+|+++|++.++.
T Consensus       159 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~  194 (198)
T 1ryp_K          159 DLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDD  194 (198)
T ss_dssp             HHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECC
T ss_pred             HHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecc
Confidence            999999999999999999999999999999988764

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=99.92  E-value=1.5e-24  Score=170.79  Aligned_cols=110  Identities=20%  Similarity=0.176  Sum_probs=101.9

Q ss_pred             cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ..+++|+++++.++..||.+.   .|||+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus       153 ~la~~ls~~l~~~r~~p~~v~~lvaG~D~-~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~l  231 (287)
T 3nzj_K          153 AASKILSNLVYQYKGAGLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL  231 (287)
T ss_dssp             HHHHHHHHHHHHTTTSCCCEEEEEEEEET-TTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCceEEEEEEEEcC-CCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHH
Confidence            357889999999988888763   36796 67899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      +++||..+.+||+.++++++|.+|+++|++.++.
T Consensus       232 a~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~  265 (287)
T 3nzj_K          232 GKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGN  265 (287)
T ss_dssp             HHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCH
Confidence            9999999999999999999999999999888763

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=99.91  E-value=2.4e-24  Score=164.96  Aligned_cols=110  Identities=17%  Similarity=0.195  Sum_probs=97.8

Q ss_pred             cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ..+++|++++++.+ .||.+.   .|+|+  +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||+++
T Consensus        78 ~la~~l~~~l~~~~-~p~~v~llvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l  154 (234)
T 3unf_H           78 TVTRILRQTLFRYQ-GHVGASLVVGGVDL--NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQEL  154 (234)
T ss_dssp             HHHHHHHHHHHHTT-TCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CCccEEEEEEEEeC--CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHH
Confidence            35678888887643 356543   36794  6899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeeccc
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDL  116 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~  116 (123)
                      +++||..+.+||..++++++|++|+++|++.++..-
T Consensus       155 a~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~  190 (234)
T 3unf_H          155 LVEAITAGILSDLGSGGNVDACVITAGGAKLQRALS  190 (234)
T ss_dssp             HHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCcee
Confidence            999999999999999999999999999999887543

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=99.91  E-value=2.6e-24  Score=161.23  Aligned_cols=110  Identities=20%  Similarity=0.185  Sum_probs=100.5

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ..+++++++++.++..||.+..   |||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus        78 ~la~~l~~~~~~~~~~p~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l  156 (212)
T 1ryp_L           78 AASKILSNLVYQYKGAGLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL  156 (212)
T ss_dssp             HHHHHHHHHHHHTTTSCCCBEEEEEEEET-TTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCceEEEEEEEEeC-CCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence            4568889999888777877743   6796 56899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      +++||..+.+||..++++++|.+|+++|++.++.
T Consensus       157 a~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~  190 (212)
T 1ryp_L          157 GKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGN  190 (212)
T ss_dssp             HHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHhccccCCceEEEEEcCCceEEECH
Confidence            9999999999999999999999999999887763

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=99.91  E-value=2.3e-24  Score=162.55  Aligned_cols=108  Identities=20%  Similarity=0.218  Sum_probs=99.6

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      +.+++|++++++++.+||.+..   |||   +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus        86 ~la~~l~~~~~~~r~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l  162 (217)
T 1yar_H           86 AVATLLSNMLNQVKYMPYMVQLLVGGID---TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDL  162 (217)
T ss_dssp             HHHHHHHHHHHHTTTSCCCEEEEEEEES---SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEEEEEC---CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHH
Confidence            4578899999998888988754   678   5799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcC-CCeEEeec
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDR-TGTVNVLQ  114 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~k-dG~~~l~~  114 (123)
                      +++||..+.+||+.++++++|.+|++ +|++.++.
T Consensus       163 a~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~  197 (217)
T 1yar_H          163 VIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPT  197 (217)
T ss_dssp             HHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCH
T ss_pred             HHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCH
Confidence            99999999999999999999999999 88887653

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=99.91  E-value=3e-24  Score=161.57  Aligned_cols=110  Identities=18%  Similarity=0.170  Sum_probs=100.0

Q ss_pred             cccchhhHHHhhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC--CCCHHH
Q psy7294           4 QNSNSLTPILFMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP--DLTVQE   76 (123)
Q Consensus         4 ~~~~~~~~~~~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~--~mt~eE   76 (123)
                      ..+++|++++|.++  ..||.+..   |+|+  +||+||++||+|++.+++++|+|+|+.+++++||+.|++  +||.||
T Consensus        87 ~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~ee  164 (219)
T 1iru_N           87 AIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTE  164 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHH
T ss_pred             HHHHHHHHHHHHhcccCCCceEEEEEEEEEC--CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHH
Confidence            35678899998866  67877743   6794  589999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecc
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQD  115 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~  115 (123)
                      |++++++||..+.+||+.++++++|.+|+++|++.++..
T Consensus       165 a~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~  203 (219)
T 1iru_N          165 ARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPL  203 (219)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCe
Confidence            999999999999999999999999999999999888754

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=99.91  E-value=4.8e-24  Score=159.04  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=97.1

Q ss_pred             cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ..+++|+++++.++.. |.+.   .|||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus        86 ~la~~l~~~~~~~~~~-~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l  163 (205)
T 1ryp_H           86 TAASVFKELCYENKDN-LTAGIIVAGYDD-KNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDF  163 (205)
T ss_dssp             HHHHHHHHHHHHTTTT-CCEEEEEEEEET-TTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcC-ceEEEEEEEEec-CCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHH
Confidence            3567889999887654 4443   36795 57899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      +++||.++.+||+.++++++|.+|+++|++....
T Consensus       164 ~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~  197 (205)
T 1ryp_H          164 IKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF  197 (205)
T ss_dssp             HHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence            9999999999999999999999999999876543

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=99.91  E-value=1.1e-23  Score=159.52  Aligned_cols=109  Identities=17%  Similarity=0.118  Sum_probs=96.3

Q ss_pred             cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ..++++++++++.+ .||.+.   .|+|+  +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||+++
T Consensus        78 ~~a~~l~~~l~~~~-~p~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l  154 (222)
T 1ryp_I           78 SALQMLKQHLFKYQ-GHIGAYLIVAGVDP--TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL  154 (222)
T ss_dssp             HHHHHHHHHHHHTT-TCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHhhcC-CCCCeeEEEEEEeC--CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHH
Confidence            34677888876643 466543   36794  6899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCC-eEEeecc
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVLQD  115 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~~~  115 (123)
                      +++||.++.+||..++++++|++|+++| ++.++..
T Consensus       155 a~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~  190 (222)
T 1ryp_I          155 ASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY  190 (222)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEE
T ss_pred             HHHHHHHHHhccccCCCcEEEEEEECCCCEEEEece
Confidence            9999999999999999999999999999 9887643

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=99.90  E-value=5e-24  Score=162.00  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=99.8

Q ss_pred             cccchhhHHHhhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC-----CCC
Q psy7294           4 QNSNSLTPILFMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP-----DLT   73 (123)
Q Consensus         4 ~~~~~~~~~~~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~-----~mt   73 (123)
                      ..+++|++++|.++  ..||.+..   |||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|++     +||
T Consensus        91 ~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms  169 (233)
T 1ryp_N           91 YIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTT  169 (233)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCC
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEEEEcC-CCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCC
Confidence            35678899998866  56877743   6795 5589999999999999999999999999999999999999     999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEeec
Q psy7294          74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVLQ  114 (123)
Q Consensus        74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~~  114 (123)
                      +|||++++++||..+.+||+.++++++|.+|+++ |++.++.
T Consensus       170 ~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~  211 (233)
T 1ryp_N          170 VQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKN  211 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcCh
Confidence            9999999999999999999999999999999999 9888764

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=99.90  E-value=1.1e-23  Score=156.40  Aligned_cols=109  Identities=26%  Similarity=0.467  Sum_probs=94.6

Q ss_pred             cchhhHHH-hhhcc-ccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           6 SNSLTPIL-FMNKT-LALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         6 ~~~~~~~~-~~~~~-~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      +++++..+ ++.+. .||.+..   |||+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus        81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l  159 (201)
T 1iru_K           81 ANFTRRNLADCLRSRTPYHVNLLLAGYDE-HEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVEL  159 (201)
T ss_dssp             HHHHHHHHHHHHTSSSCCCEEEEEEEEET-TTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCccEEEEEEEEeC-CCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHH
Confidence            34554433 44233 5877743   6795 56899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecc
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQD  115 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~  115 (123)
                      +++||.++.+||+.++++++|.+|+++|++.++.+
T Consensus       160 ~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~  194 (201)
T 1iru_K          160 LRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNI  194 (201)
T ss_dssp             HHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCB
T ss_pred             HHHHHHHHHhhccccCCceEEEEEcCCCeEEeecc
Confidence            99999999999999999999999999999988754

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=99.90  E-value=7e-24  Score=162.09  Aligned_cols=108  Identities=12%  Similarity=0.151  Sum_probs=98.4

Q ss_pred             cccchhhHHH--hhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC------
Q psy7294           4 QNSNSLTPIL--FMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP------   70 (123)
Q Consensus         4 ~~~~~~~~~~--~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~------   70 (123)
                      ..+++|++++  |.++  ..||.+..   |||+ .+||+||++||+|++.+++++|+|+|+.+++++||+.|++      
T Consensus       107 ~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~  185 (243)
T 1ryp_A          107 VLAKRMANLSQIYTQRAYMRPLGVILTFVSVDE-ELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHI  185 (243)
T ss_dssp             HHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSC
T ss_pred             HHHHHHHHHHHHHhccCCccccceEEEEEEEcC-CCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccc
Confidence            4578899999  7776  67887743   7895 5789999999999999999999999999999999999999      


Q ss_pred             -CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294          71 -DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL  113 (123)
Q Consensus        71 -~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~  113 (123)
                       +||+|||++++++||..+.+|| .++++++|++|+++|++.++
T Consensus       186 ~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~~l~  228 (243)
T 1ryp_A          186 NEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFTLS  228 (243)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeEECC
Confidence             9999999999999999999999 89999999999999977765

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=99.90  E-value=2.3e-23  Score=155.14  Aligned_cols=105  Identities=15%  Similarity=0.140  Sum_probs=95.8

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ..+++|+++++.++. ||.+..   |||+ ++||+||++||+|++.+++++++|+|+.+++++||+.|+++||.|||+++
T Consensus        78 ~la~~l~~~~~~~~~-p~~~~~lvaG~D~-~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l  155 (205)
T 1iru_H           78 TAASLFKEMCYRYRE-DLMAGIIIAGWDP-QEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF  155 (205)
T ss_dssp             HHHHHHHHHHHHTTT-TCCEEEEEEEEET-TTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCc-CccEEEEEEEEeC-CCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            356788889887765 877744   6795 57899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeE
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTV  110 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~  110 (123)
                      +++||..+.+||+.++++++|.+|+++|++
T Consensus       156 ~~~al~~~~~~d~~s~~~i~v~vi~~~g~~  185 (205)
T 1iru_H          156 TANALALAMERDGSSGGVIRLAAIAESGVE  185 (205)
T ss_dssp             HHHHHHHHHHHBTTCCSCEEEEEEETTEEE
T ss_pred             HHHHHHHHHHhccccCCcEEEEEEeCCCeE
Confidence            999999999999999999999999999864

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=99.89  E-value=7e-23  Score=159.27  Aligned_cols=107  Identities=17%  Similarity=0.130  Sum_probs=94.2

Q ss_pred             ccchhhHHHhhhccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294           5 NSNSLTPILFMNKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL   81 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~   81 (123)
                      .+++|+.++++.+ .||.+   =.|+|+  +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||++++
T Consensus       108 ~a~~l~~~l~~~~-~~~gv~llvaG~D~--~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la  184 (261)
T 3nzj_H          108 ALQMLKQHLFKYQ-GHIGAYLIVAGVDP--TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA  184 (261)
T ss_dssp             HHHHHHHHHHHTT-TCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CcccEEEEEEEEeC--CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHHHHH
Confidence            4577888887632 24444   347894  68999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCcEEEEEEcCCC-eEEeec
Q psy7294          82 KQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVLQ  114 (123)
Q Consensus        82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~~  114 (123)
                      ++||..+.+||..++++++|++|+++| ++.++.
T Consensus       185 ~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~  218 (261)
T 3nzj_H          185 SDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRN  218 (261)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEE
T ss_pred             HHHHHHHHhhCCCCCCcEEEEEEECCCcEEEecc
Confidence            999999999999999999999999999 666654

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=99.89  E-value=4.4e-23  Score=156.65  Aligned_cols=108  Identities=13%  Similarity=0.174  Sum_probs=96.0

Q ss_pred             cccchhhHHH--hhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294           4 QNSNSLTPIL--FMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE   76 (123)
Q Consensus         4 ~~~~~~~~~~--~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE   76 (123)
                      ..++++++++  |.+  +..||.+..   |||  ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus       108 ~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D--~~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~ee  185 (233)
T 1iru_B          108 QLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELED  185 (233)
T ss_dssp             HHHHHHHHHHHHTTTSBTBCCCSEEEEEEEEC--SSSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred             HHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEe--CCCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHH
Confidence            3567888888  443  356777744   678  5689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      |++++++||..+.+|| .++++++|.+|+++|++.++.
T Consensus       186 a~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~  222 (233)
T 1iru_B          186 AIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTP  222 (233)
T ss_dssp             HHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCH
T ss_pred             HHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCH
Confidence            9999999999999999 789999999999999887753

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=99.89  E-value=3.2e-23  Score=160.96  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=99.7

Q ss_pred             cccchhhHHHhhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC-----CCC
Q psy7294           4 QNSNSLTPILFMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP-----DLT   73 (123)
Q Consensus         4 ~~~~~~~~~~~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~-----~mt   73 (123)
                      ..+++|+.++|.++  ..||.+..   |||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|++     +||
T Consensus       124 ~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms  202 (266)
T 1g0u_M          124 YIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTT  202 (266)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCC
T ss_pred             HHHHHHHHHHHHhccCCCCceEEEEEEEEcC-CCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCC
Confidence            35678899998876  56877744   6795 5589999999999999999999999999999999999999     999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEeec
Q psy7294          74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVLQ  114 (123)
Q Consensus        74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~~  114 (123)
                      +|||++|+++||..+.+||+.++++++|.+|+++ |++.++.
T Consensus       203 ~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~  244 (266)
T 1g0u_M          203 VQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKN  244 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCH
Confidence            9999999999999999999999999999999999 9888764

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=99.89  E-value=6.1e-23  Score=156.65  Aligned_cols=108  Identities=17%  Similarity=0.235  Sum_probs=94.7

Q ss_pred             ccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294           5 NSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL   81 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~   81 (123)
                      .+++|+.+++..+ .||.+.   .|||+  +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||++++
T Consensus        79 la~~l~~~l~~~~-~~~~v~llvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la  155 (234)
T 1iru_I           79 ANRMLKQMLFRYR-GYIGAALVLGGVDV--TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV  155 (234)
T ss_dssp             HHHHHHHHHHHTT-TCSCEEEEEEEECS--SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred             HHHHHHHHHHhcC-CCCceeEEEEEEcC--CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHH
Confidence            3567777776543 355543   36794  68999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCcEEEEEEcCCCeEEeecc
Q psy7294          82 KQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQD  115 (123)
Q Consensus        82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~  115 (123)
                      ++||..+.+||..++++++|.+|+++|++.++..
T Consensus       156 ~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~  189 (234)
T 1iru_I          156 SEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPY  189 (234)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEE
T ss_pred             HHHHHHHHHhcccCCCCEEEEEEECCcEEEEcce
Confidence            9999999999999999999999999999877643

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=99.89  E-value=7.6e-23  Score=155.33  Aligned_cols=107  Identities=14%  Similarity=0.085  Sum_probs=94.6

Q ss_pred             cccchhhHHHhhhc----cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294           4 QNSNSLTPILFMNK----TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE   76 (123)
Q Consensus         4 ~~~~~~~~~~~~~~----~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE   76 (123)
                      +.++++++++++++    ..||.+..   |||+  +||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus       111 ~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee  188 (233)
T 1yar_A          111 NLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ--IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKE  188 (233)
T ss_dssp             HHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS--SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred             HHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC--CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHH
Confidence            45678888987643    34776643   6784  689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEEee
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVL  113 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~  113 (123)
                      |++++++||..+.+||+ ++++++|.+|+++| ++.++
T Consensus       189 a~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~  225 (233)
T 1yar_A          189 AVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYD  225 (233)
T ss_dssp             HHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECC
T ss_pred             HHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECC
Confidence            99999999999999997 89999999999998 66654

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=99.88  E-value=1.7e-22  Score=154.63  Aligned_cols=108  Identities=17%  Similarity=0.207  Sum_probs=95.3

Q ss_pred             cccchhhHHH--hhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC--CCCH
Q psy7294           4 QNSNSLTPIL--FMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP--DLTV   74 (123)
Q Consensus         4 ~~~~~~~~~~--~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~--~mt~   74 (123)
                      ..++++++++  |.++  ..||.+..   |||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|++  +||.
T Consensus       113 ~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~  191 (246)
T 1iru_A          113 MLCKRIADISQVYTQNAEMRPLGCCMILIGIDE-EQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTF  191 (246)
T ss_dssp             HHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeC-CCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCH
Confidence            3467888885  5544  66877744   7795 5789999999999999999999999999999999999999  9999


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe--EEee
Q psy7294          75 QEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT--VNVL  113 (123)
Q Consensus        75 eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~--~~l~  113 (123)
                      |||++++++||..+.+|| .++++++|.+|+++|.  +.++
T Consensus       192 eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~  231 (246)
T 1iru_A          192 EQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILT  231 (246)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECC
T ss_pred             HHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECC
Confidence            999999999999999999 9999999999999995  5543

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=99.88  E-value=1.3e-22  Score=156.94  Aligned_cols=109  Identities=21%  Similarity=0.228  Sum_probs=96.6

Q ss_pred             cccchhhHHHhhhc----cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC-CCCHH
Q psy7294           4 QNSNSLTPILFMNK----TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP-DLTVQ   75 (123)
Q Consensus         4 ~~~~~~~~~~~~~~----~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~-~mt~e   75 (123)
                      ..+++|+++++.++    ..||.+..   |||+ .+||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||.|
T Consensus       109 ~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~e  187 (261)
T 1iru_C          109 QLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDK-HYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLK  187 (261)
T ss_dssp             HHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEET-TTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHH
T ss_pred             HHHHHHHHHHHHhccccCcCcceEEEEEEEEeC-CCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHH
Confidence            34678888987654    45777643   6795 5789999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC----eEEee
Q psy7294          76 EAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG----TVNVL  113 (123)
Q Consensus        76 EAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG----~~~l~  113 (123)
                      ||++++++||..+.+||..++++++|++|+++|    ++.++
T Consensus       188 eA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~  229 (261)
T 1iru_C          188 SALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLK  229 (261)
T ss_dssp             HHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECC
T ss_pred             HHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECC
Confidence            999999999999999999999999999999997    45553

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=99.88  E-value=3.6e-22  Score=154.26  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=87.5

Q ss_pred             cchhhHHH---hhhccccccccc---ceeC--CCCceEEEEECCCCceee-eCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294           6 SNSLTPIL---FMNKTLALNSKK---WTDC--NTFGVTLYKGDPYGFMLE-VPYAYIGINGFLTASLVDKYYKPDLTVQE   76 (123)
Q Consensus         6 ~~~~~~~~---~~~~~~~~~~~~---~~D~--~~~gP~Ly~iD~~Gs~~~-~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE   76 (123)
                      +++|++.+   |..+..||-+..   |||+  ..+||+||++||+|++.+ ++++|+|+|+.+++++||+.|+++||.||
T Consensus       100 a~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~ee  179 (248)
T 3mi0_A          100 ANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTD  179 (248)
T ss_dssp             HHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHH
T ss_pred             HHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHH
Confidence            45566443   444677877743   6795  247899999999999995 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-------hcccccCCcEEEEEEcCCC----eEEee
Q psy7294          77 AYSVLKQCVHHMK-------RRTVLSYPKFTVKVLDRTG----TVNVL  113 (123)
Q Consensus        77 Ai~L~~k~i~~a~-------~Rd~~s~~~~~V~vI~kdG----~~~l~  113 (123)
                      |++|+++||.++.       +|+ +++++++|+||+++|    .+.++
T Consensus       180 ai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~~f~~l~  226 (248)
T 3mi0_A          180 ALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRRAFRRIT  226 (248)
T ss_dssp             HHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECC
T ss_pred             HHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcccEEECC
Confidence            9999999999999       664 889999999999998    56654

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=99.88  E-value=2.9e-22  Score=153.02  Aligned_cols=105  Identities=17%  Similarity=0.211  Sum_probs=92.7

Q ss_pred             cccchhhHHHhhh----ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294           4 QNSNSLTPILFMN----KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE   76 (123)
Q Consensus         4 ~~~~~~~~~~~~~----~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE   76 (123)
                      ..++++++++++.    +..||.+..   |+|+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus       109 ~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee  187 (244)
T 1ryp_C          109 ILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD-RYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDD  187 (244)
T ss_dssp             HHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEET-TTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHhccCCccceEEEEEEEEEcC-CCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHH
Confidence            3467888888442    445777743   6795 4789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEc--CCCe
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLD--RTGT  109 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~--kdG~  109 (123)
                      |++++++||..+.+||..++++++|.+|+  ++|.
T Consensus       188 a~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~  222 (244)
T 1ryp_C          188 AIELALKTLSKTTDSSALTYDRLEFATIRKGANDG  222 (244)
T ss_dssp             HHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSS
T ss_pred             HHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCC
Confidence            99999999999999976789999999999  9873

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=99.87  E-value=1.5e-22  Score=156.82  Aligned_cols=110  Identities=18%  Similarity=0.246  Sum_probs=94.1

Q ss_pred             ccccchhhHHH---hhhccccccccc---cee--CCCCceEEEEECCCCcee-eeCeEEEcccHHHHHHHHHccCCCCCC
Q psy7294           3 RQNSNSLTPIL---FMNKTLALNSKK---WTD--CNTFGVTLYKGDPYGFML-EVPYAYIGINGFLTASLVDKYYKPDLT   73 (123)
Q Consensus         3 ~~~~~~~~~~~---~~~~~~~~~~~~---~~D--~~~~gP~Ly~iD~~Gs~~-~~~~~a~G~Gs~~~~~~Ld~~y~~~mt   73 (123)
                      ++.+++|++++   |..+..||.+..   |||  +...||+||++||+|++. +++++|+|+|+.+++++||+.|+++||
T Consensus        97 ~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms  176 (259)
T 1q5q_A           97 RSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLD  176 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCC
Confidence            34578899964   767788887744   678  325689999999999999 889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-----hcccccCCcEEEEEEcCC----CeEEee
Q psy7294          74 VQEAYSVLKQCVHHMK-----RRTVLSYPKFTVKVLDRT----GTVNVL  113 (123)
Q Consensus        74 ~eEAi~L~~k~i~~a~-----~Rd~~s~~~~~V~vI~kd----G~~~l~  113 (123)
                      .|||++++++||..+.     +||. ++++++|++|+++    |++.++
T Consensus       177 ~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~  224 (259)
T 1q5q_A          177 LEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIA  224 (259)
T ss_dssp             HHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECC
T ss_pred             HHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECC
Confidence            9999999999999999     9998 9999999999999    577665

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=99.87  E-value=3.8e-22  Score=152.22  Aligned_cols=107  Identities=12%  Similarity=0.101  Sum_probs=92.4

Q ss_pred             ccchhhHHHhhhc----------cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCC
Q psy7294           5 NSNSLTPILFMNK----------TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPD   71 (123)
Q Consensus         5 ~~~~~~~~~~~~~----------~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~   71 (123)
                      .+++++++++.++          .+||.+..   |||+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++
T Consensus       104 la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~  182 (242)
T 1ryp_E          104 LTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA-DDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSS  182 (242)
T ss_dssp             HHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeC-CCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhccC
Confidence            4566777775532          34766643   6796 57899999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe-EEee
Q psy7294          72 LTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT-VNVL  113 (123)
Q Consensus        72 mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~-~~l~  113 (123)
                      ||.|||++++++||..+.+| ..++++++|.+|+++|. +.++
T Consensus       183 ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~  224 (242)
T 1ryp_E          183 LTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYD  224 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECC
T ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECC
Confidence            99999999999999999999 78999999999999985 5543

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=99.87  E-value=7.8e-22  Score=151.42  Aligned_cols=101  Identities=12%  Similarity=0.172  Sum_probs=87.9

Q ss_pred             cchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHH
Q psy7294           6 SNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLK   82 (123)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~   82 (123)
                      +++++..++.++..||.+..   |||+ .+||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||+++++
T Consensus       115 a~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~  193 (250)
T 1ryp_B          115 AKIMQEATQSGGVRPFGVSLLIAGHDE-FNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIAL  193 (250)
T ss_dssp             HHHHHHTTTSBTBCCCCEEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcccceEEEEEEEEcC-CCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            34444444555667877744   6795 5689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccCCcEEEEEEcCCC
Q psy7294          83 QCVHHMKRRTVLSYPKFTVKVLDRTG  108 (123)
Q Consensus        83 k~i~~a~~Rd~~s~~~~~V~vI~kdG  108 (123)
                      +||..+.+|+ .++++++|.+|+++|
T Consensus       194 ~al~~~~~~~-~sg~~i~v~vi~~~~  218 (250)
T 1ryp_B          194 LTLKESVEGE-FNGDTIELAIIGDEN  218 (250)
T ss_dssp             HHHHHHCCSC-CSTTTEEEEEECSCC
T ss_pred             HHHHHHhccc-cCCCCEEEEEEEccc
Confidence            9999999985 689999999999974

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=99.86  E-value=1e-21  Score=149.73  Aligned_cols=110  Identities=18%  Similarity=0.155  Sum_probs=93.9

Q ss_pred             cccchhhHHHhhhc---ccccccc---cceeCCCCc-----eEEEEECCCCceeee--CeEEEcccHHHHHHHHHccCCC
Q psy7294           4 QNSNSLTPILFMNK---TLALNSK---KWTDCNTFG-----VTLYKGDPYGFMLEV--PYAYIGINGFLTASLVDKYYKP   70 (123)
Q Consensus         4 ~~~~~~~~~~~~~~---~~~~~~~---~~~D~~~~g-----P~Ly~iD~~Gs~~~~--~~~a~G~Gs~~~~~~Ld~~y~~   70 (123)
                      ..+++|++++++++   ..||.+.   .|||+ ++|     |+||++||+|++.++  +++|+|+|+.+++++||+.|++
T Consensus        78 ~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~-~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~  156 (235)
T 1q5q_H           78 GKANRLASMVRGNLGAAMQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP  156 (235)
T ss_dssp             HHHHHHHHHHHTTHHHHTTTCCEEEEEEEECT-TCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHHhhhcccceEEEEEEEEC-CCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCC
Confidence            45678888887754   3355552   36796 446     999999999999999  9999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccccCC-c-E-----EEEEEcCCCeEEeec
Q psy7294          71 DLTVQEAYSVLKQCVHHMKRRTVLSYP-K-F-----TVKVLDRTGTVNVLQ  114 (123)
Q Consensus        71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~-~-~-----~V~vI~kdG~~~l~~  114 (123)
                      +||.|||++++++||..+.+||+.+++ . +     +|++|+++|++.++.
T Consensus       157 ~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~  207 (235)
T 1q5q_H          157 DSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSE  207 (235)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCH
Confidence            999999999999999999999988775 2 2     999999999888653

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=99.86  E-value=1.9e-21  Score=149.07  Aligned_cols=108  Identities=14%  Similarity=0.081  Sum_probs=94.7

Q ss_pred             cccchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHcc---CCCCCC
Q psy7294           4 QNSNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKY---YKPDLT   73 (123)
Q Consensus         4 ~~~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~---y~~~mt   73 (123)
                      ..+++|++++..    ++..||.+..   |||  ++||+||++||+|++.+++++|+|+|+.+++++||+.   |+++||
T Consensus       107 ~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms  184 (244)
T 1ryp_G          107 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD--KNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLS  184 (244)
T ss_dssp             HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEE--TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHHHHHHHhcccCccCceEEEEEEEEe--CCcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCC
Confidence            346778888833    2346777643   679  4689999999999999999999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC---CCeEEee
Q psy7294          74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDR---TGTVNVL  113 (123)
Q Consensus        74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~k---dG~~~l~  113 (123)
                      .|||++++++||..+.+||..++.+++|++|++   +|++.+.
T Consensus       185 ~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~  227 (244)
T 1ryp_G          185 AREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFV  227 (244)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEEC
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeC
Confidence            999999999999999999999999999999998   7887754

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=99.86  E-value=8.1e-22  Score=150.46  Aligned_cols=107  Identities=14%  Similarity=0.172  Sum_probs=92.8

Q ss_pred             cccchhhHHH--hhhc-------cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCC
Q psy7294           4 QNSNSLTPIL--FMNK-------TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPD   71 (123)
Q Consensus         4 ~~~~~~~~~~--~~~~-------~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~   71 (123)
                      ..+++|++++  |.++       ..||.+..   |+|  ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++
T Consensus       111 ~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~  188 (241)
T 1iru_E          111 SVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD--EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKS  188 (241)
T ss_dssp             HHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE--TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHhccccccccccccceEEEEEEEEe--CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhccC
Confidence            4567777887  4332       34776643   679  57899999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe-EEee
Q psy7294          72 LTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT-VNVL  113 (123)
Q Consensus        72 mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~-~~l~  113 (123)
                      ||.|||++++++||..+.+| ..++++++|.+|+++|. +.++
T Consensus       189 ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~  230 (241)
T 1iru_E          189 MTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFT  230 (241)
T ss_dssp             CCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECC
T ss_pred             CCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECC
Confidence            99999999999999999999 78999999999999984 5443

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=99.86  E-value=7.8e-22  Score=151.99  Aligned_cols=109  Identities=11%  Similarity=0.058  Sum_probs=96.4

Q ss_pred             cccchhhHHHhhhc----cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294           4 QNSNSLTPILFMNK----TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE   76 (123)
Q Consensus         4 ~~~~~~~~~~~~~~----~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE   76 (123)
                      ..+++|+++++.++    ..||.+..   |||+ .+||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus       110 ~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee  188 (254)
T 1iru_G          110 HLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSV-NDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRD  188 (254)
T ss_dssp             HHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEET-TTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHH
T ss_pred             HHHHHHHHHHHHhccccccccceEEEEEEEEeC-CCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHHH
Confidence            45788999996654    56777643   6796 5789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEcCC--C-eEEee
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT--G-TVNVL  113 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd--G-~~~l~  113 (123)
                      |++++++||..+..++..++.+++|++|+++  | ++.++
T Consensus       189 a~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~  228 (254)
T 1iru_G          189 IVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVP  228 (254)
T ss_dssp             HHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECC
T ss_pred             HHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECC
Confidence            9999999999999988778999999999987  6 77665

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=99.86  E-value=4.2e-21  Score=146.46  Aligned_cols=107  Identities=15%  Similarity=0.163  Sum_probs=92.8

Q ss_pred             cccchhhHHHhhhc----cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccC---CCCCC
Q psy7294           4 QNSNSLTPILFMNK----TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYY---KPDLT   73 (123)
Q Consensus         4 ~~~~~~~~~~~~~~----~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y---~~~mt   73 (123)
                      ..+++|+++++.+.    .+||.+..   |||+..+||+||++||.|++.+++++|+|+|+.+++++||+.|   +++||
T Consensus       106 ~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms  185 (241)
T 1ryp_D          106 YLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPAT  185 (241)
T ss_dssp             HHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCS
T ss_pred             HHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCC
Confidence            35678888887632    35777643   6795327899999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEEee
Q psy7294          74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVL  113 (123)
Q Consensus        74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~  113 (123)
                      .|||++++++||..+.+   .++++++|.+|+++| ++.++
T Consensus       186 ~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~  223 (241)
T 1ryp_D          186 VEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALS  223 (241)
T ss_dssp             HHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECC
T ss_pred             HHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECC
Confidence            99999999999999986   789999999999996 66654

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=99.86  E-value=1.1e-21  Score=151.99  Aligned_cols=109  Identities=6%  Similarity=0.024  Sum_probs=95.6

Q ss_pred             cccchhhHHHhhh----ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC--CCCH
Q psy7294           4 QNSNSLTPILFMN----KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP--DLTV   74 (123)
Q Consensus         4 ~~~~~~~~~~~~~----~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~--~mt~   74 (123)
                      ..+++|+++++.+    ...||.+..   |||+  +||+||++||+|++.+++++|+|+|+.+++++||+.|++  +||.
T Consensus       107 ~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~  184 (263)
T 1iru_F          107 RLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD--MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNL  184 (263)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHhhcccccccceEEEEEEEEcC--CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCH
Confidence            4577888988642    345776643   6794  689999999999999999999999999999999999998  9999


Q ss_pred             HHHHHHHHHHHHHHHhcc-cccCCcEEEEEEcCC-CeEEeec
Q psy7294          75 QEAYSVLKQCVHHMKRRT-VLSYPKFTVKVLDRT-GTVNVLQ  114 (123)
Q Consensus        75 eEAi~L~~k~i~~a~~Rd-~~s~~~~~V~vI~kd-G~~~l~~  114 (123)
                      |||++++++||.++.+|| ..++++++|++|+++ |++.++.
T Consensus       185 eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~  226 (263)
T 1iru_F          185 NELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDD  226 (263)
T ss_dssp             HHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCH
Confidence            999999999999999999 589999999999999 6777653

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=99.85  E-value=2.7e-21  Score=143.17  Aligned_cols=105  Identities=19%  Similarity=0.158  Sum_probs=90.4

Q ss_pred             ccccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           3 RQNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      +..+++|+++++..+. ||.+..   |+|+ ++||+||+  |+|++..++ ++++|+|+.+++++||+.|+++||.|||+
T Consensus        77 ~~~a~~l~~~l~~~~~-p~~v~~lvaG~D~-~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~  152 (199)
T 3unf_N           77 LAAANVVKNISYKYRE-DLLAHLIVAGWDQ-REGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECR  152 (199)
T ss_dssp             HHHHHHHHHHHHHTTT-TCCCCEEEEEEET-TTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CceEEEEEEEEeC-CCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHH
Confidence            3457889999887553 777643   7896 57899999  999876555 55679999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN  111 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~  111 (123)
                      +++++||..+.+||+.++++++|++|+++|++.
T Consensus       153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~  185 (199)
T 3unf_N          153 RFTTNAITLAMNRDGSSGGVIYLVTITAAGVDH  185 (199)
T ss_dssp             HHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEE
T ss_pred             HHHHHHHHHHHHhccccCCCeEEEEEcCCCEEE
Confidence            999999999999999999999999999999543

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=99.85  E-value=4.7e-21  Score=151.32  Aligned_cols=110  Identities=18%  Similarity=0.150  Sum_probs=95.0

Q ss_pred             cccchhhHHHhhhcc---cccccc---cceeCCCCc-----eEEEEECCCCceeee--CeEEEcccHHHHHHHHHccCCC
Q psy7294           4 QNSNSLTPILFMNKT---LALNSK---KWTDCNTFG-----VTLYKGDPYGFMLEV--PYAYIGINGFLTASLVDKYYKP   70 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~---~~~~~~---~~~D~~~~g-----P~Ly~iD~~Gs~~~~--~~~a~G~Gs~~~~~~Ld~~y~~   70 (123)
                      ..+++|++++++++.   .||.+.   .|||+ ++|     |+||++||+|++.++  +++|+|+|+.+++++||+.|++
T Consensus       143 ~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~-~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~  221 (294)
T 1q5r_H          143 GKANRLASMVRGNLGAAMQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP  221 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCEEEEEEEECT-TCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHhhhcCCcceEEEEEEEeC-CCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccC
Confidence            456788889887554   566653   36796 445     999999999999999  9999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccccCCc--E-----EEEEEcCCCeEEeec
Q psy7294          71 DLTVQEAYSVLKQCVHHMKRRTVLSYPK--F-----TVKVLDRTGTVNVLQ  114 (123)
Q Consensus        71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~--~-----~V~vI~kdG~~~l~~  114 (123)
                      +||.|||++++++||..+.+||+.+++.  +     +|.+|+++|++.++.
T Consensus       222 ~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~  272 (294)
T 1q5r_H          222 DSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSE  272 (294)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCH
Confidence            9999999999999999999999887643  6     999999999888653

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=99.85  E-value=2.3e-21  Score=147.31  Aligned_cols=108  Identities=11%  Similarity=0.051  Sum_probs=94.1

Q ss_pred             cccchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC--CC--
Q psy7294           4 QNSNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP--DL--   72 (123)
Q Consensus         4 ~~~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~--~m--   72 (123)
                      ..+++|++++..    ...+||.+..   |||+  .||+||++||+|++.+++++|+|+|+.+++++||+.|++  +|  
T Consensus       106 ~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~  183 (233)
T 1ryp_F          106 RAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK--SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDG  183 (233)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC--CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCC
Confidence            456788888843    2345777643   6794  689999999999999999999999999999999999999  99  


Q ss_pred             CHHHHHHHHHHHHHHHHhcc-cccCCcEEEEEEcCC-CeEEeec
Q psy7294          73 TVQEAYSVLKQCVHHMKRRT-VLSYPKFTVKVLDRT-GTVNVLQ  114 (123)
Q Consensus        73 t~eEAi~L~~k~i~~a~~Rd-~~s~~~~~V~vI~kd-G~~~l~~  114 (123)
                      |.|||++++++|+..+. || ..++++++|.+|+++ |++.++.
T Consensus       184 s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~  226 (233)
T 1ryp_F          184 NPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDG  226 (233)
T ss_dssp             CHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEG
T ss_pred             CHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCH
Confidence            99999999999999999 88 689999999999999 6777764

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=99.84  E-value=4.9e-21  Score=146.92  Aligned_cols=106  Identities=12%  Similarity=0.070  Sum_probs=92.2

Q ss_pred             cccchhhHHHhhhc----cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCC--CH
Q psy7294           4 QNSNSLTPILFMNK----TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDL--TV   74 (123)
Q Consensus         4 ~~~~~~~~~~~~~~----~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~m--t~   74 (123)
                      ..+++|+++++.+.    .+||.+..   |||+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++|  |.
T Consensus       106 ~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~  184 (248)
T 1iru_D          106 YITRYIASLKQRYTQSNGRRPFGISALIVGFDF-DGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETD  184 (248)
T ss_dssp             HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECS-SSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSH
T ss_pred             HHHHHHHHHHHHHhccCCcccccEEEEEEEEeC-CCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCCH
Confidence            35678888885532    34777643   6796 568999999999999999999999999999999999999999  99


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEEee
Q psy7294          75 QEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVL  113 (123)
Q Consensus        75 eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~  113 (123)
                      |||++++++||..+.+   .++++++|++|+++| ++.++
T Consensus       185 eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~  221 (248)
T 1iru_D          185 DLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILN  221 (248)
T ss_dssp             HHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCC
T ss_pred             HHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECC
Confidence            9999999999999987   589999999999998 66654

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=99.84  E-value=1.7e-20  Score=143.69  Aligned_cols=106  Identities=16%  Similarity=0.151  Sum_probs=92.1

Q ss_pred             cccchhhHHHhh--hc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294           4 QNSNSLTPILFM--NK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE   76 (123)
Q Consensus         4 ~~~~~~~~~~~~--~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE   76 (123)
                      ..++++++++..  ++  ..||.+..   |+|   +||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus       111 ~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee  187 (246)
T 1j2p_A          111 ELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN---EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDD  187 (246)
T ss_dssp             HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES---SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHhcccCcccccEEEEEEEEC---CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHH
Confidence            346778888843  22  34776643   678   589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEc-CC-CeEEee
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLD-RT-GTVNVL  113 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~-kd-G~~~l~  113 (123)
                      |++++++||..+.+| ..++++++|.+|+ ++ |++.++
T Consensus       188 a~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~  225 (246)
T 1j2p_A          188 AMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVS  225 (246)
T ss_dssp             HHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECC
T ss_pred             HHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECC
Confidence            999999999999999 8999999999999 64 787765

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=99.84  E-value=8.6e-21  Score=147.43  Aligned_cols=107  Identities=15%  Similarity=0.192  Sum_probs=92.1

Q ss_pred             cccchhhHHHhhh----ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294           4 QNSNSLTPILFMN----KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE   76 (123)
Q Consensus         4 ~~~~~~~~~~~~~----~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE   76 (123)
                      ..+++|++++...    ...||.+..   |||  ..||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus       115 ~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D--~~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee  192 (264)
T 3h4p_A          115 MLAKKICDIKQAYTQHGGVRPFGVSLLIAGID--KNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDE  192 (264)
T ss_dssp             HHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEE--TTEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHH
T ss_pred             HHHHHHHHHHHHHhhccCCCCeeEEEEEEEEe--CCcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHHH
Confidence            3467788887442    245776643   679  4689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEcCCC--eEEeec
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG--TVNVLQ  114 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG--~~~l~~  114 (123)
                      |++++++||..+.+|  .++++++|++|++++  ++.++.
T Consensus       193 a~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~  230 (264)
T 3h4p_A          193 GLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPV  230 (264)
T ss_dssp             HHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCT
T ss_pred             HHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCH
Confidence            999999999999988  799999999999864  666653

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=99.83  E-value=1.8e-20  Score=147.67  Aligned_cols=101  Identities=14%  Similarity=0.055  Sum_probs=90.9

Q ss_pred             cccchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHcc---CCCCCC
Q psy7294           4 QNSNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKY---YKPDLT   73 (123)
Q Consensus         4 ~~~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~---y~~~mt   73 (123)
                      ..+++|+++++.    ++..||.+..   |||+  .||+||++||+|++.+++++|+|+|+.+++++||+.   |+++||
T Consensus       111 ~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms  188 (288)
T 3nzj_F          111 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK--NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLS  188 (288)
T ss_dssp             HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET--TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC--CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCC
Confidence            456788888854    3466877743   6894  689999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC
Q psy7294          74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDR  106 (123)
Q Consensus        74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~k  106 (123)
                      .|||++++++||..+.+|+..++++++|++|++
T Consensus       189 ~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~  221 (288)
T 3nzj_F          189 AREAVKQAAKIIYLAHEDNKEKDFELEISWCSL  221 (288)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence            999999999999999999989999999999999

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=99.82  E-value=2.2e-20  Score=147.24  Aligned_cols=109  Identities=17%  Similarity=0.099  Sum_probs=84.5

Q ss_pred             cccchhhHHHhhhccc---cccc---ccceeCCCCc-----eEEEEECCCCcee--eeCeEEEcccHHHHHHHHHccCCC
Q psy7294           4 QNSNSLTPILFMNKTL---ALNS---KKWTDCNTFG-----VTLYKGDPYGFML--EVPYAYIGINGFLTASLVDKYYKP   70 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~---~~~~---~~~~D~~~~g-----P~Ly~iD~~Gs~~--~~~~~a~G~Gs~~~~~~Ld~~y~~   70 (123)
                      ..++.|++++++++.-   ||.+   =.|||+ +++     |+||++||+|++.  +++++|+|+|+.+++++||+.|++
T Consensus       135 ~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~-~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~  213 (291)
T 2jay_A          135 GKINRLAIMVRGNLAAAMQGLLALPLLAGYDI-HASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQ  213 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHTCCCEEEEEEECT-TCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhhhhhccccceeEEEEEEeC-CCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCC
Confidence            3467888888876432   4544   236795 445     9999999999999  999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccccCCc-------EEEEEEcCCCeEEee
Q psy7294          71 DLTVQEAYSVLKQCVHHMKRRTVLSYPK-------FTVKVLDRTGTVNVL  113 (123)
Q Consensus        71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~-------~~V~vI~kdG~~~l~  113 (123)
                      +||.|||++++++||..+.+||+.+++.       ++|++|+++|++.++
T Consensus       214 ~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~l~  263 (291)
T 2jay_A          214 VTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDVP  263 (291)
T ss_dssp             CCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEEcC
Confidence            9999999999999999999999887764       269999999988865

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=99.77  E-value=4.9e-19  Score=129.12  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=83.5

Q ss_pred             cccchhhHHHhhhcccc-cccc-cceeCCCCceEEEEECCCCceeeeC---eEEEcccHHHHHHHHHccCC-CCCCHHHH
Q psy7294           4 QNSNSLTPILFMNKTLA-LNSK-KWTDCNTFGVTLYKGDPYGFMLEVP---YAYIGINGFLTASLVDKYYK-PDLTVQEA   77 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-~~~~-~~~D~~~~gP~Ly~iD~~Gs~~~~~---~~a~G~Gs~~~~~~Ld~~y~-~~mt~eEA   77 (123)
                      +.+..|+..++++++++ +... .++|    ||+||++||+|++.+++   +.|+|+|+.+++++||+.|+ ++||.+  
T Consensus        73 ~~~~~l~~~~~~~~~~r~~~~~l~g~d----~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~--  146 (174)
T 1g3k_A           73 KSAVELAKDWRTDRALRKLEAMLIVAD----EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH--  146 (174)
T ss_dssp             HHHHHHHHHHHHSTTGGGCCCEEEEEC----SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH--
T ss_pred             HHHHHHHHHHHhccCcCcceEEEEEEC----CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH--
Confidence            44567899999988765 3332 2467    79999999999999988   99999999999999999999 999955  


Q ss_pred             HHHHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294          78 YSVLKQCVHHMKRRTVLSYPKFTVKVLD  105 (123)
Q Consensus        78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI~  105 (123)
                       +|+++|++.+.+||+.++++++|.+|+
T Consensus       147 -~l~~~al~~a~~rd~~sg~~i~v~~i~  173 (174)
T 1g3k_A          147 -EIVEKSLRIAGDICVFTNTNFTIEELP  173 (174)
T ss_dssp             -HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             -HHHHHHHHHHHHhccccCCceEEEEec
Confidence             799999999999999999999999996

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=99.76  E-value=1e-18  Score=128.45  Aligned_cols=94  Identities=16%  Similarity=0.097  Sum_probs=81.9

Q ss_pred             cchhhHHHhhhccc-ccccccceeCCCCceEEEEECCCCceee--eCeEEEcccHHHHHHHHHccCCC---CCCHHHHHH
Q psy7294           6 SNSLTPILFMNKTL-ALNSKKWTDCNTFGVTLYKGDPYGFMLE--VPYAYIGINGFLTASLVDKYYKP---DLTVQEAYS   79 (123)
Q Consensus         6 ~~~~~~~~~~~~~~-~~~~~~~~D~~~~gP~Ly~iD~~Gs~~~--~~~~a~G~Gs~~~~~~Ld~~y~~---~mt~eEAi~   79 (123)
                      +..|+.++.+.+++ ||.+...+=   +||+||++||+|++.+  ++++|+|+|+.+++++||+.|++   +||.||   
T Consensus        81 ~~~l~~~~~~~~~~rp~~~~~lva---d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---  154 (180)
T 2z3b_A           81 AVELAKEWRSDKVLRKLEAMLIVM---NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASE---  154 (180)
T ss_dssp             HHHHHHHHHHCTTGGGCCCCEEEE---CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH---
T ss_pred             HHHHHHHHHhhhCcCcceEEEEEE---cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH---
Confidence            34578888887776 777655443   2699999999999998  49999999999999999999998   999999   


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLD  105 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~  105 (123)
                      ++++|++.+.+||+.++++++|.+|+
T Consensus       155 l~~~al~~a~~rd~~sg~~i~v~~i~  180 (180)
T 2z3b_A          155 IARAALETAGEICVYTNDQIILEELE  180 (180)
T ss_dssp             HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence            57899999999999999999999983

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=99.73  E-value=5.5e-18  Score=123.11  Aligned_cols=90  Identities=11%  Similarity=0.151  Sum_probs=78.2

Q ss_pred             hhHHHhhhcccc-cccccceeCCCCceEEEEECCCCceeeeC--eEEEcccHHHHHHHHHccCC-CCCCHHHHHHHHHHH
Q psy7294           9 LTPILFMNKTLA-LNSKKWTDCNTFGVTLYKGDPYGFMLEVP--YAYIGINGFLTASLVDKYYK-PDLTVQEAYSVLKQC   84 (123)
Q Consensus         9 ~~~~~~~~~~~~-~~~~~~~D~~~~gP~Ly~iD~~Gs~~~~~--~~a~G~Gs~~~~~~Ld~~y~-~~mt~eEAi~L~~k~   84 (123)
                      |+..++++++.+ |.+...+=  + ||+||++||+|++.+++  +.|+|+|+.+++++||+.|+ ++||.   ++|+++|
T Consensus        78 l~~~~~~~~~~~~~~~~~lv~--D-~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l~~~a  151 (171)
T 1m4y_A           78 LAKDWRTDRVLRRLEALLLVA--D-KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REIVEKA  151 (171)
T ss_dssp             HHHHHHHCTTGGGCCCEEEEE--C-SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHHHHHH
T ss_pred             HHHHHHHhCCCCceEEEEEEE--c-CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHHHHHH
Confidence            455778877665 66644322  2 79999999999999998  99999999999999999999 99996   6799999


Q ss_pred             HHHHHhcccccCCcEEEEEE
Q psy7294          85 VHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        85 i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      ++.+.+||+.++++++|.++
T Consensus       152 l~~a~~rd~~sg~~i~v~~~  171 (171)
T 1m4y_A          152 MTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             HHHHHHHCTTCCSCCEEEEC
T ss_pred             HHHHHHhCcccCCeEEEEEC
Confidence            99999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	5e-08
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	7e-08
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	1e-07
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	3e-07
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	3e-07
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	3e-06
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	5e-06
d1rypa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	8e-06
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	1e-05
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	1e-05
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	2e-05
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	3e-05
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	1e-04
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	2e-04
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	2e-04
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	4e-04
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	0.001
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	0.003

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (111), Expect = 5e-08
 Identities = 15/90 (16%), Positives = 34/90 (37%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
           G  L+    +G      Y  +G       ++++ ++K DLT +EA  +    +       
Sbjct: 107 GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWND 166

Query: 93  VLSYPKFTVKVLDRTGTVNVLQDLKYSDFK 122
           + S     V V++       L++    + +
Sbjct: 167 LGSGSNVDVCVMEIGKDAEYLRNYLTPNVR 196

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (110), Expect = 7e-08
 Identities = 14/77 (18%), Positives = 34/77 (44%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
           G  LY   P+G   ++PY  +G       ++ +  ++PD+  +EA +++ + +       
Sbjct: 107 GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFND 166

Query: 93  VLSYPKFTVKVLDRTGT 109
           + S     + V+ +   
Sbjct: 167 LGSGSNIDLCVISKNKL 183

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (108), Expect = 1e-07
 Identities = 25/77 (32%), Positives = 48/77 (62%)

Query: 32  FGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91
            G  LY  D    + + P+A  G   FLT S++D+YY P ++ + A  +L++C+  +++R
Sbjct: 111 EGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKR 170

Query: 92  TVLSYPKFTVKVLDRTG 108
            +L+ P F+V+++D+ G
Sbjct: 171 FILNLPTFSVRIIDKNG 187

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (107), Expect = 3e-07
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 3/80 (3%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDK---YYKPDLTVQEAYSVLKQCVHHMK 89
           G  LY  +P G       A  G       + ++K   ++   L+ +EA     + ++   
Sbjct: 141 GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAH 200

Query: 90  RRTVLSYPKFTVKVLDRTGT 109
                   +  +     + T
Sbjct: 201 EDNKEKDFELEISWCSLSET 220

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (105), Expect = 3e-07
 Identities = 18/83 (21%), Positives = 33/83 (39%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
           G  LY  D  G  +      +G        ++D+ Y  DL V++AY + ++ ++    R 
Sbjct: 108 GPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRD 167

Query: 93  VLSYPKFTVKVLDRTGTVNVLQD 115
             S     +  +   G + V  D
Sbjct: 168 AYSGGAVNLYHVREDGWIRVSSD 190

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.1 bits (98), Expect = 3e-06
 Identities = 17/81 (20%), Positives = 30/81 (37%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
              ++  D  G  +E  YA  G        +++  Y   +TV E   ++ + +   K+R 
Sbjct: 107 APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRD 166

Query: 93  VLSYPKFTVKVLDRTGTVNVL 113
             S     V V+ R      L
Sbjct: 167 SASGGMIDVAVITRKDGYVQL 187

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 41.3 bits (96), Expect = 5e-06
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 33  GVTLYKGDPYGFMLEV-PYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91
           G ++Y  DP G  +E       G        +++  + P++ V EA  +  + ++   +R
Sbjct: 108 GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKR 167

Query: 92  TVLSYPKFTVKVLDRTG 108
              S     V  +    
Sbjct: 168 DSASGDGIDVVKITEDE 184

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (95), Expect = 8e-06
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 7/87 (8%)

Query: 28  DCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87
           D    G ++YK DP G+ +       G       + ++ ++K            ++ V  
Sbjct: 138 DEEL-GPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEF 196

Query: 88  MKR------RTVLSYPKFTVKVLDRTG 108
                     T  S     V V  +  
Sbjct: 197 AITHMIDALGTEFSKNDLEVGVATKDK 223

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 36  LYKGDPYGFMLEVPYAYIGING-FLTASLVDKYYK-PDLTVQEAYSVLKQCVHHMKRRTV 93
           L   D  G   E P    G         L +   K P L+  EA  ++++C+  +  R  
Sbjct: 122 LGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDA 181

Query: 94  LSYPKFTVKVLDRTGT 109
            SY +F    +   G 
Sbjct: 182 RSYNRFQTATVTEKGV 197

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVH 86
           LY  DP G         IG       + ++K    ++T ++    + + ++
Sbjct: 148 LYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIY 198

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDK-YYKPDLTVQEAYSVLKQCVHHMKRR 91
           G  LY+ DP G         IG N     S++ + Y + ++T++ A ++  + ++     
Sbjct: 143 GFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDV 202

Query: 92  TVLSYPKFTVKVLDRTGTVNVLQDLKYSD 120
           + LS  K  +  L R     V++ LK  +
Sbjct: 203 SKLSAEKVEIATLTRENGKTVIRVLKQKE 231

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 28  DCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87
           D       LY  +P G         +G N     +L+   YK D+ V +A  +  + +  
Sbjct: 140 DDRYGYQ-LYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSK 198

Query: 88  MKRRTVLSYPKFTVKVLDRTGT 109
               + L+Y +     + +   
Sbjct: 199 TTDSSALTYDRLEFATIRKGAN 220

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
           G  L+  DP G  ++     IG       S + + Y   +T++EA       +  +    
Sbjct: 143 GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEK 202

Query: 93  VLSYPKFTVKVLDRTGTVNVL 113
            L+     +  +      ++ 
Sbjct: 203 -LNATNIELATVQPGQNFHMF 222

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 7/86 (8%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK--PDLTVQEAYSVLKQCVHH-MK 89
           G  +++  P     +     IG       + ++++     +  + E      + +   + 
Sbjct: 138 GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLP 197

Query: 90  RRTVLSYPKFTVKVLDRTGTVNVLQD 115
               L+    ++ ++ +     +  D
Sbjct: 198 AEQDLTTKNVSIGIVGKDLEFTIYDD 223

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 1/80 (1%)

Query: 36  LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLS 95
           L+  +P G         IG       + +   +   LT++EA  ++ + +  +     L 
Sbjct: 147 LFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEK-LD 205

Query: 96  YPKFTVKVLDRTGTVNVLQD 115
                +  + +     +  +
Sbjct: 206 ENNAQLSCITKQDGFKIYDN 225

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.8 bits (82), Expect = 4e-04
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
           G  L+  DP G + E     IG       S +++ YK +L  +EA ++  + +       
Sbjct: 133 GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEG 192

Query: 93  VLSYPKFTVKVLDRTGTVNVLQD 115
                   +  +       +   
Sbjct: 193 -EELKAPEIASITVGNKYRIYDQ 214

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 11/55 (20%), Positives = 23/55 (41%)

Query: 33  GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87
           G +LY+ DP G         IG       + ++K +  +L +++A  +    +  
Sbjct: 144 GFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKE 198

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.7 bits (76), Expect = 0.003
 Identities = 10/117 (8%), Positives = 29/117 (24%)

Query: 1   MLRQNSNSLTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLT 60
           +L         +  +   L    K          +  +                ++  + 
Sbjct: 95  ILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVG 154

Query: 61  ASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLK 117
              +       L++  A  ++K        R V +     + ++ + G       L+
Sbjct: 155 FKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLR 211

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	99.93
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	99.93
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	99.93
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.93
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	99.92
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	99.91
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.91
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.91
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.9
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	99.9
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.9
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	99.89
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	99.89
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	99.88
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.88
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	99.88
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	99.88
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	99.87
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.87
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	99.87
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.87
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	99.86
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.86
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	99.85
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.84
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	99.84
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.84
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	99.84
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	99.83
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	99.82
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.8
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	99.8
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	99.78
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	99.78
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	99.54
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	99.41
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	99.39

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.9e-26  Score=170.65  Aligned_cols=108  Identities=17%  Similarity=0.201  Sum_probs=97.6

Q ss_pred             cccchhhHHHhhhccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ..+.+++.++|+++ .||.+   =.|+|+ .++|+||++||.|++.+++++|+|+|+.+++++||+.|+++||+|||++|
T Consensus        86 ~~~~~~~~~~~~~~-~p~~~~~lvaG~d~-~~~p~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~l  163 (205)
T d1ryph_          86 TAASVFKELCYENK-DNLTAGIIVAGYDD-KNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDF  163 (205)
T ss_dssp             HHHHHHHHHHHHTT-TTCCEEEEEEEEET-TTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCc-cCceEEEEEEeecC-CCCcEEEEECCCCcEEecCeEEeecCcHHHHHHHHhhhhcccCHHHHHHH
Confidence            34567889998876 36654   337896 67899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL  113 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~  113 (123)
                      +++||+.+.+||+.++++++|++||+||++.+.
T Consensus       164 ~~~al~~a~~rD~~sg~~v~v~iitk~G~~~~~  196 (205)
T d1ryph_         164 IKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLI  196 (205)
T ss_dssp             HHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHhcCcCCCCEEEEEEcCCceEEEe
Confidence            999999999999999999999999999988763

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.5e-26  Score=167.30  Aligned_cols=111  Identities=29%  Similarity=0.439  Sum_probs=100.6

Q ss_pred             cccchhhHHHhh--hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           4 QNSNSLTPILFM--NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         4 ~~~~~~~~~~~~--~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      .-+++++.++++  ++..||.+..   |||+.++||+||++||.|++.+++++|+|+|+.++.++||+.|+++||.|||+
T Consensus        79 ~~~~~i~~~~~~~~~~~~P~~~~~liaG~D~~~~~p~L~~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~eea~  158 (198)
T d1rypk_          79 AVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL  158 (198)
T ss_dssp             HHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccceEEEEEEEecCCCceEEEEecccccEEecceEEEeccchhhHHHHHhcccccCCHHHHH
Confidence            346677777765  5568887754   78986779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      +++++|++.+.+||+.++++++|.+|++||++.++.
T Consensus       159 ~l~~~~l~~~~~~d~~s~~~~~v~vi~~dG~~~~~~  194 (198)
T d1rypk_         159 DLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDD  194 (198)
T ss_dssp             HHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECC
T ss_pred             HHHHHHHHHHHHhcCcCCCcEEEEEEcCCCeEEcch
Confidence            999999999999999999999999999999988864

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8e-26  Score=167.66  Aligned_cols=109  Identities=20%  Similarity=0.178  Sum_probs=99.7

Q ss_pred             ccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294           5 NSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL   81 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~   81 (123)
                      .+++|++++|+++..|+...   .|+|+ +.||+||++||.|++.+++++|+|+|+.+++++||+.|+++||++||++|+
T Consensus        79 ~a~~ls~~~~~~~~~p~~~~~~l~G~~~-~~g~~Ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~mt~~ea~~l~  157 (212)
T d1rypl_          79 ASKILSNLVYQYKGAGLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLG  157 (212)
T ss_dssp             HHHHHHHHHHHTTTSCCCBEEEEEEEET-TTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCcceEeeeeEeec-CCCCEEEEECCCceEEecceEEEccCcccchhHHHHhccCCCCHHHHHHHH
Confidence            46889999999888876553   25675 678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          82 KQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      ++||+.+.+||+.++++++|++|+++|++.++.
T Consensus       158 ~~al~~~~~rd~~sg~~v~v~vi~~~g~~~~~~  190 (212)
T d1rypl_         158 KRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGN  190 (212)
T ss_dssp             HHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHhcCCCCCceEEEEEcCCceEEeCH
Confidence            999999999999999999999999999887763

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.8e-25  Score=164.32  Aligned_cols=109  Identities=20%  Similarity=0.249  Sum_probs=100.8

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      .-+++|++++++++..||.+..   |+|  ..||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus        78 ~~a~~l~~~~~~~~~~p~~~~~lvaG~d--~~~~~l~~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eea~~l  155 (201)
T d1irul_          78 AASKLLANMVYQYKGMGLSMGTMICGWD--KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDL  155 (201)
T ss_dssp             HHHHHHHHHHHTTTTSCCCBEEEEEEEC--SSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCCceEEEEEEEEe--cCCceEEEEccCceEEEeeeEEecCchHHHHHHHHhhccCCCCHHHHHHH
Confidence            4578899999999999987643   789  46899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      +++||+++.+||+.++++++|++|+++|++.++.
T Consensus       156 ~~~~l~~~~~~d~~sg~~~~v~~i~~~G~~~i~~  189 (201)
T d1irul_         156 ARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSS  189 (201)
T ss_dssp             HHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCceEEEEEeCCceEEECH
Confidence            9999999999999999999999999999877653

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.2e-25  Score=163.51  Aligned_cols=114  Identities=14%  Similarity=0.179  Sum_probs=103.4

Q ss_pred             ccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC------------
Q psy7294           5 NSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK------------   69 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~------------   69 (123)
                      .+++++.++++++..||.+.   .|+|+ +++|+||.+||+|++.+++++|+|+|+++++++||+.|+            
T Consensus        89 ~~~~~~~~~~~~~~~p~~~~~li~G~d~-~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~~~~~~~~  167 (222)
T d1ryp1_          89 AARNIQHLLYGKRFFPYYVHTIIAGLDE-DGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGK  167 (222)
T ss_dssp             HHHHHHHHHHTTTTSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTC
T ss_pred             HHHHHHHHHHhhhhhhheeeeeEEEEeC-CCCeEEEEECCCcEEEEeceEEEcccHHHHHHHHHHhhccccccCcccchh
Confidence            45667778888888898764   37896 667999999999999999999999999999999999987            


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294          70 -----PDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS  119 (123)
Q Consensus        70 -----~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~  119 (123)
                           ++||++||++++++||..+.+||+.++++++|.+||+||++.....+|.|
T Consensus       168 ~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~v~v~iitkdGv~~~~~~l~~D  222 (222)
T d1ryp1_         168 VKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD  222 (222)
T ss_dssp             SBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             hhcccccccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEeCCCEEEEEEecCCC
Confidence                 68999999999999999999999999999999999999999988888865

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.3e-24  Score=157.96  Aligned_cols=116  Identities=12%  Similarity=0.125  Sum_probs=103.7

Q ss_pred             cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAYS   79 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~   79 (123)
                      .-++.|+++++.++..||.+.   .|+|+..+.|+||++||+|++.+++ ++++|+|+.+++++|++.|+++||.+||++
T Consensus        85 ~la~~l~~~l~~~~~~p~~v~~li~G~d~~~g~~~L~~~D~~G~~~~~~~~~~~G~g~~~a~~~l~~~~~~~ms~~ea~~  164 (204)
T d1rypj_          85 TFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFE  164 (204)
T ss_dssp             HHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHhhcccceeeeEEEEEEecCCCcceEEEeCCCCccccccCcEEeecchHHHHHHHHhccccCCCHHHHHH
Confidence            346788999999888887663   4789756669999999999998876 788899999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS  119 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~  119 (123)
                      ++++||..+.+||+.++++++|.+|+++|+++....+|.|
T Consensus       165 l~~~al~~a~~~d~~sg~~~~v~ii~kdg~~~~~~~l~~D  204 (204)
T d1rypj_         165 TISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD  204 (204)
T ss_dssp             HHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHHhcCccCCeEEEEEEECCceEEEEeccCCC
Confidence            9999999999999999999999999999998877777764

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=7.8e-25  Score=163.10  Aligned_cols=108  Identities=17%  Similarity=0.249  Sum_probs=96.6

Q ss_pred             cccchhhHHHhhhccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ..+++|++++|+++. |+.+   =.|+|  .+||+||++||.|++.+++++|+|+|+.+++++|++.|+++||.+||+++
T Consensus        78 ~~a~~l~~~~y~~~~-p~~~~~ivaG~D--~~g~~L~~id~~G~~~~~~~~a~Gsgs~~a~~~L~~~~~~~~s~~ea~~l  154 (220)
T d1irui_          78 TANRMLKQMLFRYRG-YIGAALVLGGVD--VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNL  154 (220)
T ss_dssp             HHHHHHHHHHHHTTT-CSCEEEEEEEEC--SSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTH
T ss_pred             HHHHHHHhhhhhccc-ccceeEEEEEEe--CCCcEEEEEeCCCcEEEeeEEEEccccHHHHHHHHHhcccCCCHHHHHHH
Confidence            457889999987653 4333   34689  56899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      +++||+.+.+||+.++++|+|++||+||++.+..
T Consensus       155 ~~~al~~~~~~D~~sg~~i~i~vitkdg~~~~~~  188 (220)
T d1irui_         155 VSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRP  188 (220)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSE
T ss_pred             HHHHHHHhhccCCCCCCcEEEEEEECCCeEEeCc
Confidence            9999999999999999999999999999877754

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.5e-24  Score=159.50  Aligned_cols=107  Identities=15%  Similarity=0.137  Sum_probs=97.3

Q ss_pred             ccccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294           3 RQNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYS   79 (123)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~   79 (123)
                      ++.+++|++++++++ .||.+.   .|+|+ +++|+||.+||.|++.+.+++|+|+|+.+++++|++.|+++||.+||++
T Consensus        77 ~~~a~~l~~~l~~~~-~p~~~~~lvaG~d~-~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~~ea~~  154 (202)
T d1iruh_          77 HTAASLFKEMCYRYR-EDLMAGIIIAGWDP-QEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQ  154 (202)
T ss_dssp             HHHHHHHHHHHHHTT-TTCCEEEEEEEEET-TTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhc-cceeEEEEEEEeec-CCCcEEEEECCCCceeecceeEEeCCHHHHHHHHHHhhccCCcHHHHHH
Confidence            345778899988866 576653   37897 6789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN  111 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~  111 (123)
                      |+++||+.+.+||+.++++++|++|+++|++.
T Consensus       155 l~~~al~~a~~rD~~sg~~i~v~vi~~~G~~~  186 (202)
T d1iruh_         155 FTANALALAMERDGSSGGVIRLAAIAESGVER  186 (202)
T ss_dssp             HHHHHHHHHHHHBTTCCSCEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHhhCCCCCCCEEEEEEeCCCeEE
Confidence            99999999999999999999999999999865

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.4e-23  Score=154.41  Aligned_cols=116  Identities=10%  Similarity=0.151  Sum_probs=103.6

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAYS   79 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~   79 (123)
                      ..+++|+.+++.++..||.+..   |||++..+|.+|++|+.|+...+. ++++|+|+.+++++||+.|+++||.+||++
T Consensus        85 ~~a~~l~~~~~~~~~~p~~~~~lvaG~D~~~~~~~~~~~d~~g~~~~~~~~~~~G~g~~~~~~~l~~~~~~~ms~~ea~~  164 (204)
T d1iruj_          85 TLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFE  164 (204)
T ss_dssp             HHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccceeEEEEEEEcCCCCceEEEEecCCCceeeecceEEechhHHHHHHHHHhccccCCCHHHHHH
Confidence            3468889999988888887754   789766689999999999876655 799999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS  119 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~  119 (123)
                      ++++||+.+.+||+.++++++|.+|+++|+++....+|.|
T Consensus       165 l~~~al~~a~~rd~~sg~~~~v~ii~k~gi~~~~~~~r~D  204 (204)
T d1iruj_         165 TISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD  204 (204)
T ss_dssp             HHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred             HHHHHHHHHHhhcccCCCcEEEEEEeCCCEEEEEEecCCC
Confidence            9999999999999999999999999999999877777754

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=1.1e-23  Score=154.83  Aligned_cols=107  Identities=21%  Similarity=0.225  Sum_probs=97.5

Q ss_pred             ccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294           5 NSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL   81 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~   81 (123)
                      -++.|++++++++..||.+..   |+|.   +|+||.+||+|++.+++++|+|+|+.+++++|++.|+++||+|||++++
T Consensus        79 ~a~~l~~~~~~~~~~p~~~~~lvaG~d~---~p~l~~~d~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~eea~~l~  155 (203)
T d1yarh1          79 VATLLSNMLNQVKYMPYMVQLLVGGIDT---APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLV  155 (203)
T ss_dssp             HHHHHHHHHHHTTTSCCCEEEEEEEESS---SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCccceeEEEEEcC---CCeeEecCCccceecccccccCCCcHHHHHHHHHhccCCCCHHHHHHHH
Confidence            467888889999999987744   6674   6999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCcEEEEEEcC-CCeEEeec
Q psy7294          82 KQCVHHMKRRTVLSYPKFTVKVLDR-TGTVNVLQ  114 (123)
Q Consensus        82 ~k~i~~a~~Rd~~s~~~~~V~vI~k-dG~~~l~~  114 (123)
                      ++||+.+.+||+.++++++|++|++ +|++.++.
T Consensus       156 ~~~l~~~~~~d~~~~~~v~v~ii~~~~g~~~l~~  189 (203)
T d1yarh1         156 IRAISAAKQRDSASGGMIDVAVITRKDGYVQLPT  189 (203)
T ss_dssp             HHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCH
T ss_pred             HHHHHHHHHhcCCCCCeEEEEEEECCCCEEECCH
Confidence            9999999999999999999999986 57877764

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=9.9e-24  Score=156.58  Aligned_cols=116  Identities=18%  Similarity=0.197  Sum_probs=99.4

Q ss_pred             cccchhhHHHhhhc--cccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccC--CCCCCHHH
Q psy7294           4 QNSNSLTPILFMNK--TLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYY--KPDLTVQE   76 (123)
Q Consensus         4 ~~~~~~~~~~~~~~--~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y--~~~mt~eE   76 (123)
                      .-++.|++++|.++  ..||.+   =.|+|  +++|+||.+||+|++.+++++|+|+|+.+++++||+.|  +++||+||
T Consensus        87 ~~a~~l~~~~y~~~~~~~p~~~~~li~G~d--~~~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~lt~~e  164 (217)
T d1iru2_          87 AIHSWLTRAMYSRRSKMNPLWNTMVIGGYA--DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTE  164 (217)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEEEEEEEEE--TTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHH
T ss_pred             HHHHHHHHHHHHhccccCcccceEEEEEEc--CCCcEEEEEecCceeEeeeEEeccCcHHHHHHHHHHHhcccCCCCHHH
Confidence            34567888887755  556554   34678  57899999999999999999999999999999999966  48999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccccc
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYSDF  121 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~~~  121 (123)
                      |++|+++||+.+.+||+.++++++|.+|+++|++.+...--.+++
T Consensus       165 a~~l~~~al~~a~~rd~~sg~~i~i~vi~~~G~~~~~~~~~~~~~  209 (217)
T d1iru2_         165 ARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNW  209 (217)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHHhcCcCCCcEEEEEEeCCCEEEcCCeeccccH
Confidence            999999999999999999999999999999999887765444443

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.89  E-value=3.5e-23  Score=151.17  Aligned_cols=108  Identities=15%  Similarity=0.168  Sum_probs=98.3

Q ss_pred             cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAYS   79 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~   79 (123)
                      .-++++++++++++..||.+..   |+|  ..||+||.+||.|++.+++ ++|+|+|+.+++++||+.|+++||+|||++
T Consensus        78 ~~a~~~~~~~~~~~~~p~~~~~lvaG~d--~~~~~l~~~d~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~  155 (202)
T d1j2qh_          78 AIATLTSNLLNSYRYFPYLVQLLIGGID--SEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVE  155 (202)
T ss_dssp             HHHHHHHHHHHHTTTSCCCEEEEEEEEE--TTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHhhhcccceeeEEEEEEEc--CCCceEEEEeCCCCeEeecceEEccCChHHHHHHHHhhcCCCCCHHHHHH
Confidence            3467889999998888987743   678  5689999999999987765 899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL  113 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~  113 (123)
                      ++++||..+.+||+.++++++|++|+++|++.++
T Consensus       156 l~~~al~~~~~~d~~~g~~v~v~~i~~~g~~~~~  189 (202)
T d1j2qh_         156 LAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYS  189 (202)
T ss_dssp             HHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECH
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEEECCCEEEeC
Confidence            9999999999999999999999999999998775

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.5e-23  Score=155.46  Aligned_cols=107  Identities=17%  Similarity=0.138  Sum_probs=92.9

Q ss_pred             cccchhhHHHhhhccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294           4 QNSNSLTPILFMNKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV   80 (123)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L   80 (123)
                      ..+++|++++++++ .|+.+   -.|+|  ++||+||.+||.|++.+++++|+|+|+.+++++||+.|+++||+|||++|
T Consensus        78 ~~a~~l~~~~~~~~-~p~~~~~l~aG~d--~~g~~Ly~id~~G~~~~~~~~a~Gsg~~~a~~~Le~~~k~~ms~eea~~l  154 (222)
T d1rypi_          78 SALQMLKQHLFKYQ-GHIGAYLIVAGVD--PTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL  154 (222)
T ss_dssp             HHHHHHHHHHHHTT-TCSCEEEEEEEEE--TTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhh-hccceeEEEEEEc--CCCcEEEEEecCcceEEeeEEEECCCcHHHHHHHHhhccCCCCHHHHHHH
Confidence            45677888877654 35444   34678  57899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCcEEEEEEcCCC-eEEee
Q psy7294          81 LKQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVL  113 (123)
Q Consensus        81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~  113 (123)
                      +++||+.+.+||+.++++++|++|++++ .+.++
T Consensus       155 ~~~al~~a~~~D~~sg~~i~i~vi~~~~~~~~~~  188 (222)
T d1rypi_         155 ASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLR  188 (222)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEE
T ss_pred             HHHHHHHHhcccCCCCCcEEEEEEEcCCCeEEec
Confidence            9999999999999999999999999874 44443

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=4.7e-23  Score=154.31  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=96.1

Q ss_pred             ccchhhHHHhhh--cccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC-----CCCCH
Q psy7294           5 NSNSLTPILFMN--KTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK-----PDLTV   74 (123)
Q Consensus         5 ~~~~~~~~~~~~--~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~-----~~mt~   74 (123)
                      .+++|++++|.+  +..||.+.   .|+|+ +++|+||.+||+|++.+++++|+|+|+.+++++||+.|+     |+||+
T Consensus        92 ~a~~l~~~~y~~~~~~~P~~~~~liaG~d~-~g~~~ly~~d~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~~~ms~  170 (233)
T d1ryp2_          92 IFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTV  170 (233)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCCSGGGGGGCCH
T ss_pred             HHHHHHHHHHhhccccCCceeEEEEEEEcC-CCCeEEEEEcCCCcEEeeeeEEecCccHHHHHHHHHHHhhcccccccCH
Confidence            357788888764  56787653   47796 667999999999999999999999999999999999998     78999


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEeec
Q psy7294          75 QEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVLQ  114 (123)
Q Consensus        75 eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~~  114 (123)
                      |||++|+++||+.+.+||+.++++|+|++|++| |++.++.
T Consensus       171 eeA~~l~~~al~~~~~rD~~sg~~i~i~~itkd~g~~~~~~  211 (233)
T d1ryp2_         171 QVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKN  211 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCCCEEECCh
Confidence            999999999999999999999999999999998 6666653

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.1e-22  Score=145.96  Aligned_cols=113  Identities=25%  Similarity=0.441  Sum_probs=98.0

Q ss_pred             ccchhhHHHhh--hccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294           5 NSNSLTPILFM--NKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYS   79 (123)
Q Consensus         5 ~~~~~~~~~~~--~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~   79 (123)
                      .+++|+..+++  ++..|+..   -.|+|+ ..+|+||++||.|++.+.++.++|+|+.+++++|++.|+++||++||++
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~aG~d~-~~~~~l~~~~~~g~~~~~~~~a~G~gs~~a~~~l~~~~~~~~~~~ea~~  158 (199)
T d1iruk_          80 AANFTRRNLADCLRSRTPYHVNLLLAGYDE-HEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVE  158 (199)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCEEEEEEEEET-TTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCcceeeeecceec-cCCceEEeecccceEEeeeeeeecccchhhhHHHHHhccCCCCHHHHHH
Confidence            35667777755  34445544   337896 6789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecc-ccc
Q psy7294          80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQD-LKY  118 (123)
Q Consensus        80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~-~k~  118 (123)
                      ++++||..+.+||+.++++++|++|+++|++.++.+ +++
T Consensus       159 l~~~al~~~~~~d~~sg~~~~v~vv~~~g~~~~~~~~~~~  198 (199)
T d1iruk_         159 LLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISFPK  198 (199)
T ss_dssp             HHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCBCCCC
T ss_pred             HHHHHHHHHHHhcCCcCCceEEEEEcCCCeEEcCCccCCC
Confidence            999999999999999999999999999999987654 444

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.2e-22  Score=146.84  Aligned_cols=114  Identities=16%  Similarity=0.168  Sum_probs=101.8

Q ss_pred             ccchhhHHHhhhccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC---------CCC
Q psy7294           5 NSNSLTPILFMNKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK---------PDL   72 (123)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~---------~~m   72 (123)
                      -+++++..+++++..|+.+   -.|+|+ .++|++|.+||.|++.++++.++|+|+.+++++||++|+         ++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~-~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~l~~~~~~~~~~~~~~~~~  166 (213)
T d1iru1_          88 IAAMLSTILYSRRFFPYYVYNIIGGLDE-EGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPL  166 (213)
T ss_dssp             HHHHHHHHHHTTTTSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCC
T ss_pred             HHHHHHHHHHHHHhhhcccccceEEEec-CCCcEEEecCCcceeeecCeeeecCccHHHHHHHHHhhcccchhcccccCC
Confidence            3567888888888888655   336786 678999999999999999999999999999999998764         789


Q ss_pred             CHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294          73 TVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS  119 (123)
Q Consensus        73 t~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~  119 (123)
                      |.|||++++++|+..+.+||+.++++++|.+|+++|+++....+|.|
T Consensus       167 s~~ea~~~~~~~l~~~~~~d~~sg~~~~v~~i~k~G~~~~~~~~r~D  213 (213)
T d1iru1_         167 SLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD  213 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCEEEEEEeccCC
Confidence            99999999999999999999999999999999999999888788765

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.2e-22  Score=153.92  Aligned_cols=102  Identities=13%  Similarity=0.198  Sum_probs=89.5

Q ss_pred             cchhhHHH----hhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           6 SNSLTPIL----FMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         6 ~~~~~~~~----~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      ++.+|+++    ..++.+||.+..   |+|+ ++||+||++||.|++.+++++|+|+|+.+++++||++|+++||+|||+
T Consensus       111 a~~~~~~~~~~~~~~~~rp~~v~~li~G~D~-~~gp~Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~ms~eea~  189 (250)
T d1rypb_         111 VSEVAKIMQEATQSGGVRPFGVSLLIAGHDE-FNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAI  189 (250)
T ss_dssp             HHHHHHHHHHTTTSBTBCCCCEEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHhhhcCCcCeeEEEEEEEecC-CCCCEEEEEcCcEEEEEeeEEecCcchHHHHHHHHHhcccCCCHHHHH
Confidence            45566665    335567775533   6796 678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT  109 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~  109 (123)
                      +|+++||+++..|| .++++++|++|++++.
T Consensus       190 ~la~~al~~~~~~d-~s~~~iev~vi~~~~~  219 (250)
T d1rypb_         190 HIALLTLKESVEGE-FNGDTIELAIIGDENP  219 (250)
T ss_dssp             HHHHHHHHHHCCSC-CSTTTEEEEEECSCCG
T ss_pred             HHHHHHHHHHhhcc-CCCCCEEEEEEeCCCc
Confidence            99999999999998 6899999999999985

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.8e-22  Score=152.53  Aligned_cols=103  Identities=17%  Similarity=0.258  Sum_probs=91.8

Q ss_pred             cchhhHHHhh----hcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           6 SNSLTPILFM----NKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         6 ~~~~~~~~~~----~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      +++|++++..    ....||.+.   .|+|+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||+|||+
T Consensus       111 ~~~l~~~~~~~~~~~~~rP~~~~~ll~G~d~-~~gp~Ly~id~~Gs~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eeai  189 (244)
T d1rypc_         111 VRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD-RYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAI  189 (244)
T ss_dssp             HHHHHHHHHHHHHBSSCCCCCEEEEEEEEET-TTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred             HHHHHHHHhhhhhccccCccceeEEEEEEec-CCCceEEEecCCCcEeeeeeeeccchhHHHHHHHHhcccCCCCHHHHH
Confidence            5567777743    335677664   37896 668999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT  109 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~  109 (123)
                      +|+++||+.+.+||..++++++|++|+++|.
T Consensus       190 ~l~~~al~~a~~~d~~~~~~iei~ii~~~~~  220 (244)
T d1rypc_         190 ELALKTLSKTTDSSALTYDRLEFATIRKGAN  220 (244)
T ss_dssp             HHHHHHHHHHCSSSSCCGGGEEEEEEECCSS
T ss_pred             HHHHHHHHHHHhccCCCCCcEEEEEEECCCc
Confidence            9999999999999999999999999999984

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=1.8e-22  Score=153.19  Aligned_cols=103  Identities=21%  Similarity=0.248  Sum_probs=91.5

Q ss_pred             ccchhhHHHhhhcc----ccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC-CCCHHH
Q psy7294           5 NSNSLTPILFMNKT----LALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP-DLTVQE   76 (123)
Q Consensus         5 ~~~~~~~~~~~~~~----~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~-~mt~eE   76 (123)
                      -++.++++++....    +||.+..   |||+ ++||+||++||+|++.+++++|+|+|+.+++++||++|++ +||+||
T Consensus       109 la~~l~~~~~~~~~~~~~rP~~~~~li~G~D~-~~gp~Ly~~Dp~G~~~~~~~~a~G~gs~~a~~~Le~~y~~~~ms~ee  187 (250)
T d1iruc_         109 LVTALCDIKQAYTQFGGKRPFGVSLLYIGWDK-HYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKS  187 (250)
T ss_dssp             HHHHHHHHHHHTTTBSSCCCCCEEEEEEEEET-TTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHH
T ss_pred             HHHHHHHHHHHHhhhccCCcceEEEEEEEEcC-CCCCEEEEEcccccEeeeeEEEeCcChHHHHHHHHhhcccCCCCHHH
Confidence            35677888866443    3766643   6896 6789999999999999999999999999999999999985 899999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG  108 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG  108 (123)
                      |++|+++||+.+.+||..++++++|++|+++|
T Consensus       188 ai~la~~al~~~~~~d~~~~~~iei~ii~~~~  219 (250)
T d1iruc_         188 ALALAIKVLNKTMDVSKLSAEKVEIATLTREN  219 (250)
T ss_dssp             HHHHHHHHHHHSSSCTTCCSTTCEEEEEECCS
T ss_pred             HHHHHHHHHHHHhcccCCCCCeEEEEEEEcCC
Confidence            99999999999999999999999999999987

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.9e-22  Score=152.25  Aligned_cols=108  Identities=12%  Similarity=0.125  Sum_probs=93.4

Q ss_pred             ccchhhHHHhh----hcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC-------
Q psy7294           5 NSNSLTPILFM----NKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP-------   70 (123)
Q Consensus         5 ~~~~~~~~~~~----~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~-------   70 (123)
                      -+++||.++++    ...+||.+.   .|||+ +.||+||++||+|++.+++++|+|+|+.+++++||++|++       
T Consensus       108 ~a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~g~~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~  186 (243)
T d1rypa_         108 LAKRMANLSQIYTQRAYMRPLGVILTFVSVDE-ELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHIN  186 (243)
T ss_dssp             HHHHHHHHHHHHHHBTTSCCCSCEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCC
T ss_pred             HHHHHHHHHHHHhhcccccCccceEEEEEEcc-CCCCeEEEEcCCEEEEecceEEeCccHHHHHHHHHHHhhcccccccc
Confidence            35667777644    236677663   37896 6689999999999999999999999999999999999985       


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          71 DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      ++|.+||++++++|++.+.+|| .++++++|+||+++|++.++.
T Consensus       187 ~~s~eeav~la~~~l~~~~~~d-~~~~~iei~iitk~g~~~l~~  229 (243)
T d1rypa_         187 EESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFTLSA  229 (243)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEECCH
T ss_pred             cccHHHHHHHHHHHHHHHhhcc-CCCCcEEEEEEeCCceEEeCH
Confidence            4699999999999999999999 588999999999999998864

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=4.1e-22  Score=148.81  Aligned_cols=107  Identities=12%  Similarity=0.125  Sum_probs=91.4

Q ss_pred             ccchhhHHHhh----hccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294           5 NSNSLTPILFM----NKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA   77 (123)
Q Consensus         5 ~~~~~~~~~~~----~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA   77 (123)
                      .+++|+.++.+    +...||.+   -.|+|  ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||+|||
T Consensus       109 ~~~~l~~~~~~~~~~~~~~p~~~~~li~g~d--~~~~~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea  186 (233)
T d1irub_         109 LVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDA  186 (233)
T ss_dssp             HHHHHHHHHHHTTTSBTBCCCSEEEEEEEEC--SSSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHhhccccccceEEEeeeecc--cCCceEEEEcCCcceEeccceecCCcHHHHHHHHHhhcccCccHHHH
Confidence            35677777743    33344433   23556  67899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294          78 YSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~  114 (123)
                      ++++++||+.+.+||+ ++++|+|++||++|++.++.
T Consensus       187 ~~l~~~~L~~~~~~d~-~~~~vev~ii~~~g~~~l~~  222 (233)
T d1irub_         187 IHTAILTLKESFEGQM-TEDNIEVGICNEAGFRRLTP  222 (233)
T ss_dssp             HHHHHHHHHTTCCSCC-CSSSEEEEEEETTEEEECCH
T ss_pred             HHHHHHHHHHHHhccC-CCCcEEEEEEeCCCeEECCH
Confidence            9999999999999986 67899999999999998864

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1e-21  Score=148.06  Aligned_cols=95  Identities=14%  Similarity=0.142  Sum_probs=84.5

Q ss_pred             cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccc
Q psy7294          18 TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVL   94 (123)
Q Consensus        18 ~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~   94 (123)
                      ..||.+..   |+|+ +++|+||++||.|++.+++++|+|+|+.+++++||++|+++||++||++|+++|++++.+|+ .
T Consensus       127 ~rP~~~~~ii~G~D~-~~~p~L~~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~~ea~~la~~~l~~~~~~~-~  204 (242)
T d1rype_         127 SRPFGVALLIAGHDA-DDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEK-L  204 (242)
T ss_dssp             SSCCSEEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSC-C
T ss_pred             cccceEEEEEEEecc-ccceEEEEEcCCCceeccceeecccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc-C
Confidence            46766643   6897 67899999999999999999999999999999999999999999999999999999999988 5


Q ss_pred             cCCcEEEEEEcC-CCeEEeec
Q psy7294          95 SYPKFTVKVLDR-TGTVNVLQ  114 (123)
Q Consensus        95 s~~~~~V~vI~k-dG~~~l~~  114 (123)
                      +.++++|++|++ +|++.++.
T Consensus       205 ~~~~~~v~~i~~~~g~~~l~~  225 (242)
T d1rype_         205 DENNAQLSCITKQDGFKIYDN  225 (242)
T ss_dssp             CTTSEEEEEEETTTEEEECCH
T ss_pred             CCCceEEEEEECCCCeEECCH
Confidence            666899999976 58887753

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.2e-21  Score=147.20  Aligned_cols=106  Identities=13%  Similarity=0.166  Sum_probs=90.7

Q ss_pred             cchhhHHHhh---------hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCC
Q psy7294           6 SNSLTPILFM---------NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLT   73 (123)
Q Consensus         6 ~~~~~~~~~~---------~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt   73 (123)
                      ++.|++++++         .+.+||.+..   |+|  ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||
T Consensus       106 a~~i~~~~~~~t~~~~~~~~~~rP~~~~~il~G~D--~~gp~Ly~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~  183 (234)
T d1irue_         106 TQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD--EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMT  183 (234)
T ss_dssp             HHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE--TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHHhhcccccccccccceEEEEEEEEc--CCCCEEEEEecCcccceeeeEEeCCchHHHHHHHHHhhccCCC
Confidence            4556666643         2356776643   789  4689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEeec
Q psy7294          74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVLQ  114 (123)
Q Consensus        74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~~  114 (123)
                      +|||++++.+|++.+.+|+ .++.+++|++|+++ +++.++.
T Consensus       184 ~eeai~~a~~al~~~~~~~-~~~~~iei~ii~~~~~~k~l~~  224 (234)
T d1irue_         184 LKEAIKSSLIILKQVMEEK-LNATNIELATVQPGQNFHMFTK  224 (234)
T ss_dssp             HHHHHHHHHHHHHHHCSSC-CCTTSEEEEEECSSSCCEECCH
T ss_pred             HHHHHHHHHHHHHHHHhcc-CCCCCEEEEEEECCCCEEECCH
Confidence            9999999999999998887 78889999999986 6777754

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=2.1e-21  Score=144.57  Aligned_cols=106  Identities=15%  Similarity=0.109  Sum_probs=90.8

Q ss_pred             cchhhHHHhh----hcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294           6 SNSLTPILFM----NKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY   78 (123)
Q Consensus         6 ~~~~~~~~~~----~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi   78 (123)
                      ++.+|.++.+    +...||-+.   .|+|  ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||+|||+
T Consensus       101 ~~~~a~~~~~~~~~~~~rP~~~~~li~G~d--~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~  178 (221)
T d1yara1         101 VKRVADQMQQYTQYGGVRPYGVSLIFAGID--QIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAV  178 (221)
T ss_dssp             HHHHHHHHHHTTTBTTBCCCCEEEEEEEEC--SSCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHhhhccCCCcceEEEEEEEe--cCCCeEEEEcCCccEEEeeEEEECCchHHHHHHHHHHhhccccHHHHH
Confidence            4566777644    345576663   3789  568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEeec
Q psy7294          79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVLQ  114 (123)
Q Consensus        79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~~  114 (123)
                      +++++|++.+.+++ .+.++++|++|+++ |+|.++.
T Consensus       179 ~la~~~l~~~~~~~-~~~~~~ei~~i~~~~~~r~l~~  214 (221)
T d1yara1         179 TLGIKALKSSLEEG-EELKAPEIASITVGNKYRIYDQ  214 (221)
T ss_dssp             HHHHHHHHHTSCSS-CCCCCCEEEEEETTSCCEECCH
T ss_pred             HHHHHHHHHHHhcc-CCCCCcEEEEEEcCCCEEECCH
Confidence            99999999998876 78889999999975 6777753

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=4.9e-21  Score=144.82  Aligned_cols=106  Identities=17%  Similarity=0.187  Sum_probs=91.0

Q ss_pred             cchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccC--CCCCCHHH
Q psy7294           6 SNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYY--KPDLTVQE   76 (123)
Q Consensus         6 ~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y--~~~mt~eE   76 (123)
                      ++.+++++++    ++.+||.+..   |||+ ++||+||++||+|++.+++++|+|+|+.+++++||++|  +++||++|
T Consensus       114 a~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~-~~g~~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~d~t~ee  192 (244)
T d1irua_         114 CKRIADISQVYTQNAEMRPLGCCMILIGIDE-EQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQ  192 (244)
T ss_dssp             HHHHHHHHHHHHHBSSBCCCSEEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHH
T ss_pred             HHHHHHHHHHHhcccccCccceeeEEEEEcC-CCCcEEEEEcCCccEEecceEeccCchhHHHHHHHhccccccCCCHHH
Confidence            4556666643    5778888753   6896 67899999999999999999999999999999999999  45899999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEcCCC--eEEee
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG--TVNVL  113 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG--~~~l~  113 (123)
                      |++++++|+..+..|| .++++++|+||++++  ++.++
T Consensus       193 ai~l~~~~l~~~~~~d-~~~~~iev~ii~~~~~~~~~l~  230 (244)
T d1irua_         193 TVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILT  230 (244)
T ss_dssp             HHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECC
T ss_pred             HHHHHHHHHHHHHhcC-CCCCcEEEEEEEeCCCcEEECC
Confidence            9999999999999999 567889999999986  45554

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=99.84  E-value=3.8e-21  Score=142.15  Aligned_cols=108  Identities=19%  Similarity=0.156  Sum_probs=90.1

Q ss_pred             cchhhHHHhhhc---cccccc--------ccceeCCCCceEEEEECCCCceeee--CeEEEcccHHHHHHHHHccCCCCC
Q psy7294           6 SNSLTPILFMNK---TLALNS--------KKWTDCNTFGVTLYKGDPYGFMLEV--PYAYIGINGFLTASLVDKYYKPDL   72 (123)
Q Consensus         6 ~~~~~~~~~~~~---~~~~~~--------~~~~D~~~~gP~Ly~iD~~Gs~~~~--~~~a~G~Gs~~~~~~Ld~~y~~~m   72 (123)
                      ++.++++++.+.   ..|+..        -.|+|+ ..+|+||++||.|+..++  +++|+|+|+.+++++||++|+++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~d~-~~~~~l~~~d~~G~~~~~~~~~~a~GsG~~~a~~~Le~~~~~~m  158 (224)
T d1q5qh_          80 ANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDE-SRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDS  158 (224)
T ss_dssp             HHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSST-TSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHhhcccccCccceeeEEEeecccccc-cCCceEEEEEccCcEEEeccceeeecCccHHHHHHHHHhhcccC
Confidence            566777775533   223222        124565 668999999999998876  579999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcccccCC-------cEEEEEEcCCCeEEeec
Q psy7294          73 TVQEAYSVLKQCVHHMKRRTVLSYP-------KFTVKVLDRTGTVNVLQ  114 (123)
Q Consensus        73 t~eEAi~L~~k~i~~a~~Rd~~s~~-------~~~V~vI~kdG~~~l~~  114 (123)
                      |++||++++++||+.+.+||..||+       ++.+.+||++|++.++.
T Consensus       159 t~~ea~~l~~~al~~a~~rD~~SGg~~~~~~~~~~~~~i~~~g~~~l~~  207 (224)
T d1q5qh_         159 DEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSE  207 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCH
T ss_pred             CHHHHHHHHHHHHHHHHhhccccCCcccccccceEEEEEeCCcEEEcCH
Confidence            9999999999999999999999886       48999999999998864

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=3.3e-21  Score=146.22  Aligned_cols=108  Identities=10%  Similarity=0.088  Sum_probs=92.5

Q ss_pred             cccchhhHHHhh----hcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294           4 QNSNSLTPILFM----NKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE   76 (123)
Q Consensus         4 ~~~~~~~~~~~~----~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE   76 (123)
                      .-++.||+++..    ...+||-+.   .|||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus       110 ~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~-~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~dmt~ee  188 (245)
T d1irug_         110 HLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSV-NDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRD  188 (245)
T ss_dssp             HHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEET-TTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHH
T ss_pred             HHHHHHHHHHHHhhccccccccceEEEEEEEcC-CCCceEEEEcCCceEEeeeEEEECCccHHHHHHHHhhcCCCCCHHH
Confidence            345677777633    445677764   37897 6789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCcEEEEEEcCC--CeEEe
Q psy7294          77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT--GTVNV  112 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd--G~~~l  112 (123)
                      |++|+++||+.+.+++..++.+++|.+|+++  |.+.+
T Consensus       189 a~~l~~~~l~~~~~~~~~~~~~iei~~v~~~~~~~~~~  226 (245)
T d1irug_         189 IVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEI  226 (245)
T ss_dssp             HHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEE
T ss_pred             HHHHHHHHHHHHHhhccCCCceEEEEEEEecCCCeEEE
Confidence            9999999999999998888999999999875  55443

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.84  E-value=1.1e-20  Score=142.79  Aligned_cols=106  Identities=15%  Similarity=0.149  Sum_probs=89.3

Q ss_pred             ccchhhHHHhh----hcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294           5 NSNSLTPILFM----NKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA   77 (123)
Q Consensus         5 ~~~~~~~~~~~----~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA   77 (123)
                      -++.+++++..    +..+||-+.   .|+|.   +|+||.+||.|++.+++++|+|+|+.+++++||+.|+++||+|||
T Consensus       109 l~~~l~~~~~~~~~~~~~rP~~~~~il~G~D~---~p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~y~~~ms~eea  185 (243)
T d1j2pa_         109 LAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE---VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDA  185 (243)
T ss_dssp             HHHHHHHHHHHTTSBTTBCCCCEEEEEEEESS---SEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCccceeEEEEEecC---CceEEEEeccCceeeeeEEEeCCCcHHHHHHHHhhcccCCCHHHH
Confidence            35667777754    334476653   35673   699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccccCCcEEEEEEcCC--CeEEeec
Q psy7294          78 YSVLKQCVHHMKRRTVLSYPKFTVKVLDRT--GTVNVLQ  114 (123)
Q Consensus        78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd--G~~~l~~  114 (123)
                      ++|+.+|++.+.+||. ++++|+|++|+++  |++.++.
T Consensus       186 i~la~~~l~~~~~~d~-~~~~iei~iv~~~~~~~~~l~~  223 (243)
T d1j2pa_         186 MVLGLVAMGLSIESEL-VPENIEVGYVKVDDRTFKEVSP  223 (243)
T ss_dssp             HHHHHHHHHHHHTSCC-CGGGEEEEEEETTTCCCEECCH
T ss_pred             HHHHHHHHHHHHhccc-CCCceEEEEEEeCCCcEEECCH
Confidence            9999999999999995 5679999999876  6777653

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=8.4e-21  Score=142.64  Aligned_cols=108  Identities=13%  Similarity=0.050  Sum_probs=92.7

Q ss_pred             cccchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHcc----CCCCC
Q psy7294           4 QNSNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKY----YKPDL   72 (123)
Q Consensus         4 ~~~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~----y~~~m   72 (123)
                      .-++.|+++++.    +..+||-+..   |+|  ++||+||++||+|++.+++++|+|+|+..++++|++.    |+++|
T Consensus       106 ~la~~l~~~~~~~t~~~~~RP~gv~~il~G~d--~~g~~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~dm  183 (233)
T d1rypf_         106 RAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYD--KSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDG  183 (233)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE--TTEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHhcccccCCccceEEEEEEc--CCCCEEEEEccccceecccEEEecCchHHHHHHHHHHHhhccccCC
Confidence            346778888743    3445777644   689  4689999999999999999999999999999999875    47899


Q ss_pred             CHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEee
Q psy7294          73 TVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVL  113 (123)
Q Consensus        73 t~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~  113 (123)
                      ++|||++++.+||..+.+||..++++++|++|+++ +.+.++
T Consensus       184 s~eeai~l~~~~l~~~~~~d~~~~~~iev~ii~k~~~~~~l~  225 (233)
T d1rypf_         184 NPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYD  225 (233)
T ss_dssp             CHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEECCCCeEECC
Confidence            99999999999999999999999999999999998 466654

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=2.5e-20  Score=141.02  Aligned_cols=99  Identities=14%  Similarity=0.066  Sum_probs=85.4

Q ss_pred             cchhhHHHhh----hcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHc---cCCCCCCHH
Q psy7294           6 SNSLTPILFM----NKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDK---YYKPDLTVQ   75 (123)
Q Consensus         6 ~~~~~~~~~~----~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~---~y~~~mt~e   75 (123)
                      ++.++.+++.    +..+||.+.   .|||  ++||+||++||+|++.+++++|+|+|+.+++++||+   +|+++||.|
T Consensus       109 a~~~~~~~~~~t~~~~~RP~~~~~iiaG~D--~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~~~~~Lek~~~~~~~~mt~e  186 (244)
T d1rypg_         109 ADRLGQYVQAHTLYNSVRPFGVSTIFGGVD--KNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAR  186 (244)
T ss_dssp             HHHHHHHHHHTTSCTTBCCCCEEEEEEEEE--TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHH
T ss_pred             HHHHHHHHHHhhcccccCCceEEEEEEEEe--CCCCEEEEEcCCccEEecCeEecCCccHHHHHHHHHHHhhCCCCCCHH
Confidence            5566666643    334466553   4789  468999999999999999999999999999999995   799999999


Q ss_pred             HHHHHHHHHHHHHHhcccccCCcEEEEEEcC
Q psy7294          76 EAYSVLKQCVHHMKRRTVLSYPKFTVKVLDR  106 (123)
Q Consensus        76 EAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~k  106 (123)
                      ||++|+++|+..+.+|+..+..+++|.+|+.
T Consensus       187 eai~la~~~L~~~~~~~~~~~~~iev~ii~~  217 (244)
T d1rypg_         187 EAVKQAAKIIYLAHEDNKEKDFELEISWCSL  217 (244)
T ss_dssp             HHHHHHHHHHHHHGGGGTTSCEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHhcccCCCCeEEEEEEEE
Confidence            9999999999999999988899999999964

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=4.4e-20  Score=139.05  Aligned_cols=108  Identities=6%  Similarity=0.024  Sum_probs=89.4

Q ss_pred             ccchhhHHH--hhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCC--CHH
Q psy7294           5 NSNSLTPIL--FMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDL--TVQ   75 (123)
Q Consensus         5 ~~~~~~~~~--~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~m--t~e   75 (123)
                      .++.||++.  |..+  .+||.+..   |||  ++||+||++||+|++.+++++|+|+|+.+++++||++|+++|  |++
T Consensus       105 l~~~l~~~~~~y~~~~~~rP~~v~~il~G~D--~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Lek~~~~~~~~~~~  182 (238)
T d1iruf_         105 LVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD--DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLN  182 (238)
T ss_dssp             HHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE--TTEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhhccCCCcccceEEEEEEc--CCCceEEEEcCCCCEEeeeeEEECCCchhhHHHHHhhcccccCCCHH
Confidence            456677775  3333  35776533   789  468999999999999999999999999999999999999855  999


Q ss_pred             HHHHHHHHHHHHHHhcc-cccCCcEEEEEEcCC-CeEEeec
Q psy7294          76 EAYSVLKQCVHHMKRRT-VLSYPKFTVKVLDRT-GTVNVLQ  114 (123)
Q Consensus        76 EAi~L~~k~i~~a~~Rd-~~s~~~~~V~vI~kd-G~~~l~~  114 (123)
                      ||++++.+|++++..++ .+++++|+|++|+++ +++.++.
T Consensus       183 eav~lai~al~~~~~~~~~~~~~~iev~ii~k~~~~~~l~~  223 (238)
T d1iruf_         183 ELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDD  223 (238)
T ss_dssp             HHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECS
T ss_pred             HHHHHHHHHHHHHHhhcccCCCCcEEEEEEeCCCCEEECCH
Confidence            99999999999887654 468999999999998 5676653

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3e-19  Score=134.48  Aligned_cols=106  Identities=14%  Similarity=0.140  Sum_probs=89.3

Q ss_pred             ccchhhHHHhh----hcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC---CCCH
Q psy7294           5 NSNSLTPILFM----NKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP---DLTV   74 (123)
Q Consensus         5 ~~~~~~~~~~~----~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~---~mt~   74 (123)
                      -++.++.+++.    ...+||.+.   .|||+.++||+||++||+|++.+++++|+|+|+.+++++|++.|++   +||.
T Consensus       107 la~~i~~~~~~~t~~~~~rP~~v~~li~G~d~~~~~p~Ly~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~t~  186 (241)
T d1rypd_         107 LTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATV  186 (241)
T ss_dssp             HHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSH
T ss_pred             HHHHHHHHHHHHhhccccCcccceEEEEEEccccCcceEEEecCCEEEEeeCeEEECcCHHHHHHHHHHhhhcccCCCCH
Confidence            45667777754    345677664   3789767799999999999999999999999999999999999965   6999


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEee
Q psy7294          75 QEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVL  113 (123)
Q Consensus        75 eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~  113 (123)
                      +||++++.+|++.+.+   .++.+++|+||++| +++.++
T Consensus       187 ~e~i~lal~al~~~~~---~~~~~iei~ii~~d~~~~~l~  223 (241)
T d1rypd_         187 EECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALS  223 (241)
T ss_dssp             HHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECC
T ss_pred             HHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCCEEECC
Confidence            9999999999998876   56889999999998 566664

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=99.78  E-value=1.6e-19  Score=135.45  Aligned_cols=108  Identities=15%  Similarity=0.161  Sum_probs=84.8

Q ss_pred             cchhhHHH---hhhccccccccc---ceeCC--CCceEEEEECCCCceeeeCe-EEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294           6 SNSLTPIL---FMNKTLALNSKK---WTDCN--TFGVTLYKGDPYGFMLEVPY-AYIGINGFLTASLVDKYYKPDLTVQE   76 (123)
Q Consensus         6 ~~~~~~~~---~~~~~~~~~~~~---~~D~~--~~gP~Ly~iD~~Gs~~~~~~-~a~G~Gs~~~~~~Ld~~y~~~mt~eE   76 (123)
                      ++.++.++   +..+..||-+..   |||+.  ..||+||.+||+|++.++++ ++.|.++.+++++|++.|+++||+||
T Consensus        92 a~~~~~~~~~~~~~~~rP~gvs~lvaG~D~~g~~~~p~Ly~vDpsG~~~~~~~~~~~g~~s~~~~~~Le~~y~~~ms~ee  171 (227)
T d1q5qa_          92 ANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEA  171 (227)
T ss_dssp             HHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEEEEecCCCCCCCEEEEEccccceeeecccccCCCchHHHHHHHHHhccCCCCHHH
Confidence            44556653   456667877643   57863  36899999999999998885 55677899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccc----ccCCcEEEEEEcCCC----eEEee
Q psy7294          77 AYSVLKQCVHHMKRRTV----LSYPKFTVKVLDRTG----TVNVL  113 (123)
Q Consensus        77 Ai~L~~k~i~~a~~Rd~----~s~~~~~V~vI~kdG----~~~l~  113 (123)
                      |++|+++||+.+.++|.    +++++++|+||+++|    ++.++
T Consensus       172 a~~la~~aL~~a~~~d~~~~~~~~~~ievavi~k~~~~~~fr~l~  216 (227)
T d1q5qa_         172 AVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIA  216 (227)
T ss_dssp             HHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECC
T ss_pred             HHHHHHHHHHHHhhcccccCCcCcceEEEEEEECCCCccceEEcC
Confidence            99999999999998874    567899999999997    45554

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=2.4e-19  Score=135.19  Aligned_cols=105  Identities=13%  Similarity=0.080  Sum_probs=84.3

Q ss_pred             ccchhhHHHhh----hcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCC--CHH
Q psy7294           5 NSNSLTPILFM----NKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDL--TVQ   75 (123)
Q Consensus         5 ~~~~~~~~~~~----~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~m--t~e   75 (123)
                      -++.|++++.+    +..+||-+.   .|||+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++|  +.+
T Consensus       106 la~~ls~~~~~~t~~~~~rp~~v~~li~G~D~-~~~p~Ly~idp~G~~~~~~~~a~G~gs~~a~~~Lek~~~~~~~~~~~  184 (243)
T d1irud_         106 ITRYIASLKQRYTQSNGRRPFGISALIVGFDF-DGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDD  184 (243)
T ss_dssp             HHHHHHHHHHHTTSBTTBCCCCEEEEEEEECS-SSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHH
T ss_pred             HHHHHHHHHHHHHhcccCCccceEEEEEEEcC-CCCCEEEEecCcEEEEeccEEEECCChHHHHHHHHHhcccCCCccHH
Confidence            35677777744    445666553   36895 568999999999999999999999999999999999999998  566


Q ss_pred             HHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEee
Q psy7294          76 EAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVL  113 (123)
Q Consensus        76 EAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~  113 (123)
                      ||+++   |++.+.+++..++++++|++|+++ |++.++
T Consensus       185 ~~i~~---ai~~l~~~~~~~~~~vei~ii~k~~~~~~l~  220 (243)
T d1irud_         185 LTIKL---VIKALLEVVQSGGKNIELAVMRRDQSLKILN  220 (243)
T ss_dssp             HHHHH---HHHHHHTTSCTTSTTCCEEEEESSSCEECCC
T ss_pred             HHHHH---HHHHHHHHhcCCCCcEEEEEEECCCCEEECC
Confidence            66666   455556667788999999999987 777764

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=99.54  E-value=6.6e-16  Score=110.33  Aligned_cols=74  Identities=12%  Similarity=0.012  Sum_probs=68.4

Q ss_pred             CCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          31 TFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        31 ~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      ..++.++..|+.+.....++.|+|+|+.+++++||+.|+++||+|||++|+++||+.|.+||+.++++++|.+|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~g~l~~~~~~~~s~~eA~~l~~~Al~~A~e~dvyT~~~~~~~~i  179 (180)
T d2z3ba1         106 QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEEL  179 (180)
T ss_dssp             SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             ccccccccCCceeecccccEEEEcCchHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHHhhcEEcCCcEEEEEe
Confidence            34677888888888888889999999999999999999999999999999999999999999999999999887

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=3.1e-14  Score=100.23  Aligned_cols=71  Identities=11%  Similarity=0.150  Sum_probs=64.8

Q ss_pred             CCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          31 TFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK-PDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        31 ~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~-~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      ..+|+++..|+.|+....++.|+|||+.+++++|+..|+ ++|   +|.+|+++||+.|.+||+.++++++|-.|
T Consensus       100 ~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~l~~~~~~~~~---~a~el~~~Ai~~A~e~dvyTg~~~~i~~~  171 (171)
T d1m4ya_         100 KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDL---SAREIVEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             CCcceEEecCCceeeecCCEEEEcchHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhhceEcCCcEEEEEC
Confidence            668999999999999999999999999999999998765 566   47789999999999999999999998754

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=99.39  E-value=4.9e-14  Score=99.52  Aligned_cols=72  Identities=15%  Similarity=0.054  Sum_probs=66.8

Q ss_pred             CCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294          31 TFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL  104 (123)
Q Consensus        31 ~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI  104 (123)
                      +++|.++..|+.|++.+.++.|+|||+.++++.|+..|+  ++.+||.+|+++||+.|.+||+.++++++|-+|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~~~l~~~~~--~~~~~A~ela~~Ai~~Aae~dvyTgd~~~i~~~  172 (173)
T d1g3ka_         101 KESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVE--NTELSAHEIVEKSLRIAGDICVFTNTNFTIEEL  172 (173)
T ss_dssp             SCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             CCcceecccCceEEecCCCEEEecchHHHHHHHHHHhhh--cCCCCHHHHHHHHHHHHHhhcEEcCCcEEEEEC
Confidence            668999999999999999999999999999999998874  566789999999999999999999999999876