Psyllid ID: psy7295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAIQ
Secondary Structure (PSIPRED)
ccccEEEEEcccccccccccccEEEEEccccHHHccccHHHHHHHHcccccccccccEEEcccccEEEEcccccEEEEcccccccHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccEEEEEcccccccEEEEEEEEcccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEccEcccccEcccccEEEEEEEcccccccccccHHHHHHHEcccccEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEcccEEEEcHHHHHHHccccEEEEEEccccccccEEEEEEEEcccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSLNIVKVvdsdnrmvpygqqGELLIRGYCNMLRywgneektkeilgednwlrtgdqfvltkdgfgsvVGRIKDLIIrggeniypseiedfltthPDILEAYVSEYRLKLdftgllqqcsipgycvygirdermgeeIGASirltenssltedelrgyfkgkaiq
Flexible Loop (DISEMBL)
mslnivkvvdsdnrmvpygqqgeLLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQfvltkdgfgsvvGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFtgllqqcsipGYCVYGIRDERMGEEIGAsirltenssltedelrgyfkgkaiq
Low Complexity Region (SEG)
MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAIQ
Disordered region (IsUnstruct)
****IVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIG**************************
Disordered Region (DISOPRED)
MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI*
Disordered Region (DISEMBL)
MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAIQ
Disordered Region (DISPRO)
MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
FB|FBgn0031703	593	CG12512 [Drosophila melanogast	0.587	0.163	0.628	3e-38
ZFIN|ZDB-GENE-060825-7	606	acsf2 "acyl-CoA synthetase fam	0.587	0.160	0.612	4.3e-35
UNIPROTKB|F1PTR3	612	ACSF2 "Uncharacterized protein	0.539	0.145	0.595	1.1e-32
UNIPROTKB|G1K208	614	ACSF2 "Acyl-CoA synthetase fam	0.496	0.133	0.597	1.1e-31
UNIPROTKB|Q17QJ1	615	ACSF2 "Acyl-CoA synthetase fam	0.496	0.133	0.597	1.1e-31
UNIPROTKB|F1RT96	609	ACSF2 "Uncharacterized protein	0.587	0.159	0.5	7.6e-31
UNIPROTKB|E1BS15	589	ACSF2 "Uncharacterized protein	0.587	0.164	0.510	7.9e-31
UNIPROTKB|E1BVI3	593	ACSF2 "Uncharacterized protein	0.587	0.163	0.510	8.2e-31
UNIPROTKB|B4DUF5	455	ACSF2 "Acyl-CoA synthetase fam	0.496	0.180	0.573	2.5e-30
MGI|MGI:2388287	615	Acsf2 "acyl-CoA synthetase fam	0.496	0.133	0.585	3e-30

FB|FBgn0031703 CG12512 [Drosophila melanogaster (taxid:7227)]

 Score = 350 (128.3 bits), Expect = 3.0e-38, Sum P(2) = 3.0e-38
 Identities = 61/97 (62%), Positives = 78/97 (80%)

Query:     7 KVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFG 66
             KVVD++ R VP+GQ GEL +RGY  ML Y  +EEKTKE +G D WLRTGDQFVL  +G+G
Sbjct:   413 KVVDAEGRCVPFGQPGELCVRGYTTMLGYHDDEEKTKETIGNDRWLRTGDQFVLEANGYG 472

Query:    67 SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
              +VGR+K+++IRGGENI+P EIEDFL  HP ++EA+V
Sbjct:   473 RIVGRLKEMLIRGGENIFPKEIEDFLNAHPQVIEAHV 509

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-060825-7 acsf2 "acyl-CoA synthetase family member 2" [Danio rerio (taxid:7955)]

 Score = 305 (112.4 bits), Expect = 4.3e-35, Sum P(2) = 4.3e-35
 Identities = 60/98 (61%), Positives = 72/98 (73%)

Query:     7 KVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
             KVVD +   +VP G QGEL+IRGYC ML YW +EEKT+E + +D W +TGD   L +  +
Sbjct:   434 KVVDPTTGEIVPLGAQGELMIRGYCVMLEYWQDEEKTRECITKDRWYKTGDIASLDQFAY 493

Query:    66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
               + GRIKDLIIRGGENIYP+EIE FL THP ILEA V
Sbjct:   494 CKIEGRIKDLIIRGGENIYPAEIEQFLHTHPKILEAQV 531

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

UNIPROTKB|F1PTR3 ACSF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 289 (106.8 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
 Identities = 53/89 (59%), Positives = 61/89 (68%)

Query:    15 MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKD 74
             +V     GEL IRGYC ML YWG  EKTKE +G D W RTGD   + K GF  +VGR KD
Sbjct:   446 LVELNTPGELFIRGYCVMLGYWGEPEKTKEAIGPDKWYRTGDIAAIDKQGFCKIVGRSKD 505

Query:    75 LIIRGGENIYPSEIEDFLTTHPDILEAYV 103
             +IIRGGENIYP+E+EDF   HP +LE  V
Sbjct:   506 MIIRGGENIYPAELEDFFHKHPQVLEVQV 534

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|G1K208 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 49/82 (59%), Positives = 61/82 (74%)

Query:    22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
             GEL IRGYC ML YWG  +KT+E +G+D W RTGD  ++ + GF  +VGR KD+IIRGGE
Sbjct:   458 GELCIRGYCVMLGYWGEPQKTEEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGE 517

Query:    82 NIYPSEIEDFLTTHPDILEAYV 103
             NIYP+E+EDF  THP + E  V
Sbjct:   518 NIYPAELEDFFHTHPQVQEVQV 539

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q17QJ1 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 49/82 (59%), Positives = 61/82 (74%)

Query:    22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
             GEL IRGYC ML YWG  +KT+E +G+D W RTGD  ++ + GF  +VGR KD+IIRGGE
Sbjct:   459 GELCIRGYCVMLGYWGEPQKTEEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGE 518

Query:    82 NIYPSEIEDFLTTHPDILEAYV 103
             NIYP+E+EDF  THP + E  V
Sbjct:   519 NIYPAELEDFFHTHPQVQEVQV 540

GO:0005739 "mitochondrion" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1RT96 ACSF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 277 (102.6 bits), Expect = 7.6e-31, Sum P(2) = 7.6e-31
 Identities = 49/98 (50%), Positives = 68/98 (69%)

Query:     7 KVVDSDNR-MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
             ++++ + R +      GEL IRGYC M  YWG+ +KT E++G+D W RTGD  V+ + GF
Sbjct:   437 QIMNMETRTLAELNTPGELCIRGYCVMQGYWGDPQKTDEVIGQDKWYRTGDIAVMDEQGF 496

Query:    66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
               +VGR KD+IIRGGENIYP+E+EDF  THP + +  V
Sbjct:   497 CRIVGRAKDMIIRGGENIYPAELEDFFHTHPQVQDVQV 534

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1BS15 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 279 (103.3 bits), Expect = 7.9e-31, Sum P(2) = 7.9e-31
 Identities = 50/98 (51%), Positives = 67/98 (68%)

Query:     7 KVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
             K+ D + R  VP    GEL +RGYC ML YW +  +T+E++ +DNW +TGD   L + G+
Sbjct:   417 KIEDPETRKPVPLNTPGELQVRGYCVMLGYWNDSARTREVISDDNWYKTGDIATLDEHGY 476

Query:    66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
               ++GR KD+IIRGGENIYP+EIE FL THP + E  V
Sbjct:   477 CRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQV 514

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1BVI3 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 279 (103.3 bits), Expect = 8.2e-31, Sum P(2) = 8.2e-31
 Identities = 50/98 (51%), Positives = 67/98 (68%)

Query:     7 KVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
             K+ D + R  VP    GEL +RGYC ML YW +  +T+E++ +DNW +TGD   L + G+
Sbjct:   417 KIEDPETRKPVPLNTPGELQVRGYCVMLGYWNDSARTREVISDDNWYKTGDIATLDEHGY 476

Query:    66 GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
               ++GR KD+IIRGGENIYP+EIE FL THP + E  V
Sbjct:   477 CRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQV 514

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|B4DUF5 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 263 (97.6 bits), Expect = 2.5e-30, Sum P(2) = 2.5e-30
 Identities = 47/82 (57%), Positives = 58/82 (70%)

Query:    22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
             GEL IRGYC ML YWG  +KT+E + +D W  TGD   + + GF  +VGR KD+IIRGGE
Sbjct:   299 GELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGE 358

Query:    82 NIYPSEIEDFLTTHPDILEAYV 103
             NIYP+E+EDF  THP + E  V
Sbjct:   359 NIYPAELEDFFHTHPKVQEVQV 380

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:2388287 Acsf2 "acyl-CoA synthetase family member 2" [Mus musculus (taxid:10090)]

 Score = 267 (99.0 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
 Identities = 48/82 (58%), Positives = 59/82 (71%)

Query:    22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
             GEL IRGYC M  YWG  +KT E +G+D W RTGD  ++ + GF  +VGR KD+IIRGGE
Sbjct:   459 GELYIRGYCVMQGYWGEPQKTFETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRGGE 518

Query:    82 NIYPSEIEDFLTTHPDILEAYV 103
             NIYP+E+EDF   HP + EA V
Sbjct:   519 NIYPAELEDFFLKHPQVQEAQV 540

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	165
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-62
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-55
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	8e-44
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	4e-41
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-39
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	5e-39
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	7e-39
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	7e-39
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-36
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	4e-36
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-34
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-34
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-33
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-32
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-31
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-31
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-31
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	9e-30
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	8e-29
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-28
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	3e-27
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	6e-27
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-26
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-26
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-26
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	4e-26
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	1e-25
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-25
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-24
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-24
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-24
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	7e-24
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-23
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-23
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	9e-23
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-22
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-22
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	3e-22
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	4e-22
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	6e-22
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	8e-22
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-21
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-21
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-21
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	3e-21
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	5e-21
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	7e-21
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	7e-21
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	4e-20
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	4e-20
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	5e-20
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	8e-20
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-19
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	3e-19
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	5e-19
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	5e-19
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	6e-19
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	8e-19
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	6e-18
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	6e-18
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	8e-18
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	9e-18
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-17
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-17
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	3e-17
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	4e-17
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	5e-17
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	6e-17
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	6e-17
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	7e-17
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	7e-17
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	8e-17
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	8e-17
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-16
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-16
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-16
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-16
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-15
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	1e-15
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	3e-15
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	3e-15
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	3e-15
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-14
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-14
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-14
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	3e-14
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	4e-14
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	4e-14
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	6e-14
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	6e-14
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	6e-14
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-13
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	4e-13
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-12
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-12
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	3e-12
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	3e-12
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-11
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	3e-11
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	4e-11
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	7e-11
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	1e-10
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	1e-10
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-10
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	4e-10
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	7e-10
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	9e-10
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	1e-09
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	2e-09
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	2e-09
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-09
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	3e-09
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-09
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	5e-09
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	5e-09
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	5e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-08
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-08
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	3e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-08
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-07
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-07
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	2e-07
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	4e-07
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	8e-07
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-06
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	2e-06
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-06
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	5e-06
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	1e-05
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-05
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-05
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-05
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	5e-05
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	7e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-04
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	2e-04
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-04
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	3e-04
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	3e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-04
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	6e-04
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	0.001
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	0.002
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.003
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	0.004
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	0.004

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  195 bits (499), Expect = 1e-62
 Identities = 66/157 (42%), Positives = 91/157 (57%), Gaps = 23/157 (14%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           VK+VD D   VP G+ GE+ +RGY  M  Y+ + E T E +  D WL TGD   + +DG+
Sbjct: 184 VKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGY 243

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +VGRIKD+IIRGGENIYP+EIE+ L THP + EA                        
Sbjct: 244 LRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEA-----------------------A 280

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
           V G+ DER+GE + A + L   ++LTE+EL  + +G+
Sbjct: 281 VVGVPDERLGEVVAAFVVLKPGATLTEEELIAFCRGR 317

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  183 bits (466), Expect = 1e-55
 Identities = 70/158 (44%), Positives = 95/158 (60%), Gaps = 24/158 (15%)

Query: 6   VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           VK+VD +    VP G+QGEL  RGY  M  YW + EKT E +  D W+ TGD  V+ ++G
Sbjct: 382 VKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEG 441

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
           + ++VGRIKD+IIRGGENIYP EIE+FL THP I +                Q       
Sbjct: 442 YVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDV---------------Q------- 479

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
            V G+ DE+ GEE+ A I L   ++LTE+++R + +GK
Sbjct: 480 -VVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGK 516

Length = 559

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  151 bits (383), Expect = 8e-44
 Identities = 68/157 (43%), Positives = 88/157 (56%), Gaps = 23/157 (14%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           VKVVD D   VP G+ GEL  RGY  M  YW N E T E + ED W+ TGD   + + G+
Sbjct: 384 VKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGY 443

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +VGR KD+IIRGGENIYP EIE+FL THP + +                         
Sbjct: 444 VRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQ----------------------- 480

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
           V+G+ DE+ GEEI A +RL    + +E+ELR + K +
Sbjct: 481 VFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKAR 517

Length = 558

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  140 bits (355), Expect = 4e-41
 Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 24/157 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V++VD D R +P G+ GE+++RG   M  YW   E T E L  D WL TGD   L +DG+
Sbjct: 180 VRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR-DGWLHTGDLGYLDEDGY 238

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +V R KD+II GGENIYP+E+E+ L  HP + +                         
Sbjct: 239 LYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADV-----------------------A 275

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
           V G+ DE  GE + A + L   ++L  +EL  + + +
Sbjct: 276 VIGVPDEEWGEAVVAVVVLRPGATLDAEELIAFCRER 312

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  136 bits (345), Expect = 1e-39
 Identities = 58/155 (37%), Positives = 82/155 (52%), Gaps = 24/155 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V ++D D R +P GQ+GE++IRG      Y  N E  +E    D W RTGD   L +DG+
Sbjct: 182 VAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAF-RDGWFRTGDLGYLDEDGY 240

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             + GRIK+LI RGGE I P E+E+ L  HP + EA                        
Sbjct: 241 LFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEA-----------------------V 277

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160
           V+G+ DE  GEE+ A++ L  +S +T +ELR + +
Sbjct: 278 VFGVPDELYGEEVAAAVVLRADSKVTIEELRDFAR 312

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  138 bits (349), Expect = 5e-39
 Identities = 63/159 (39%), Positives = 83/159 (52%), Gaps = 25/159 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V++VD D   V  G+ GE+ +RG   M  YW   E T E   ED WLRTGD   + +DG+
Sbjct: 357 VRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGY 416

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +VGR+KDLII GGENIYP EIE  L  HP + EA                        
Sbjct: 417 LYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEA-----------------------A 453

Query: 126 VYGIRDERMGEEIGASIRLTE--NSSLTEDELRGYFKGK 162
           V G+ DER GE + A + L    ++ LT +ELR + + +
Sbjct: 454 VVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKR 492

Length = 534

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  137 bits (348), Expect = 7e-39
 Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 26/159 (16%)

Query: 6   VKVVDSDNRMVP--YGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
            ++VD D   +P   G+ GE+++RG   M  YW   E T E + +  WL TGD   + +D
Sbjct: 350 ARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDED 408

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           G+  +  RIKD+II GGENIYP E+ED L  HP + E                       
Sbjct: 409 GYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEV---------------------- 446

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
             V G+ DE+ GE   A + L   ++L   ELR + +G+
Sbjct: 447 -AVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGR 484

Length = 521

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  136 bits (346), Expect = 7e-39
 Identities = 61/153 (39%), Positives = 84/153 (54%), Gaps = 24/153 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           VK+VD +   +P G+ GEL++RG   M  YW   E+T E+L  D WLRTGD   + +DG+
Sbjct: 306 VKIVDDEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEVL-TDGWLRTGDIGYMDEDGY 364

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +V R KD+II GG N+YP EIE+ L +HP +LEA                        
Sbjct: 365 FYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEA-----------------------A 401

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
           V G+ D   GE + A + L E +SLTE+EL  +
Sbjct: 402 VVGVPDPYRGEAVKAFVVLKEGASLTEEELIAF 434

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  131 bits (331), Expect = 1e-36
 Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 23/159 (14%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           +++VD     VP G+ GELL RG   +  Y+   E       +D + RTGD   +  DG+
Sbjct: 320 IRIVDDQGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGY 379

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             VVGRIKD I RGGE I P EIE+ L +HP + +A                        
Sbjct: 380 YRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADA-----------------------A 416

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
           V G+ DE +GE I A +     ++ T  ELR + + + +
Sbjct: 417 VVGMPDEVLGERICAFVVPRGGAAPTLAELRAFLREQGL 455

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  129 bits (326), Expect = 4e-36
 Identities = 56/157 (35%), Positives = 75/157 (47%), Gaps = 24/157 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V++VD D   VP G++GEL +RG    L Y    + T+    +D W RTGD   L  DG+
Sbjct: 273 VRIVDDDGNDVPPGEEGELQVRGPQLFLGYLDPPDNTEAFT-DDGWFRTGDLGRLDADGY 331

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             + GR KD+IIRGGENI   EIED L  HP + E                         
Sbjct: 332 LRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEV-----------------------A 368

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
           V  + DER+GE + A +     +SLT  EL  +   +
Sbjct: 369 VVAMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQ 405

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  122 bits (309), Expect = 2e-34
 Identities = 55/151 (36%), Positives = 76/151 (50%), Gaps = 23/151 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V+VVD + + +P G+ GEL++RG   M  YW N  +T     ED W RTGD   L ++G+
Sbjct: 180 VRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGY 239

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             + GR KDLI  GGEN+YP+E+E  L  HP + EA                        
Sbjct: 240 LYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEA-----------------------A 276

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELR 156
           V G+ DE  GE I A + L   +    +EL+
Sbjct: 277 VVGVPDEDRGERIVAFVVLRPGADALAEELK 307

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  125 bits (316), Expect = 2e-34
 Identities = 55/153 (35%), Positives = 77/153 (50%), Gaps = 23/153 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
            K+V+     VP G+ GELL+RG   M  Y+ + E T   +  D WL TGD   L ++G+
Sbjct: 348 NKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGY 407

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +V R KD+ I GG N+YP+E+E+ L  HP + EA                        
Sbjct: 408 LYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEA-----------------------A 444

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
           V G+ DER+GE   A + L   + LTE+EL  Y
Sbjct: 445 VIGVPDERLGEVGKAYVVLKPGAELTEEELIAY 477

Length = 513

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  121 bits (305), Expect = 2e-33
 Identities = 42/100 (42%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL--RTGDQFVLTKD 63
           VKV+D +   VP G+ GEL IRG      Y  + E T E   ED W   RTGD     +D
Sbjct: 313 VKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDED 372

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
           G+  ++GR  D +   GE I P EIE  L  HP + EA V
Sbjct: 373 GYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  120 bits (303), Expect = 1e-32
 Identities = 53/158 (33%), Positives = 72/158 (45%), Gaps = 24/158 (15%)

Query: 6   VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
            K+VD D  + +   ++GEL ++G   M  Y  N E TKE + ED WL TGD     +DG
Sbjct: 327 AKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDG 386

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
              +V R K+LI   G  + P+E+E  L  HP + +A                       
Sbjct: 387 NFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADA----------------------- 423

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
            V GI DE  GE   A + L   S LTE E++ Y   K
Sbjct: 424 AVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKK 461

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  116 bits (294), Expect = 1e-31
 Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 25/159 (15%)

Query: 6   VKVVDSDNR-MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           V++VD D    +  G+ GE+ +RG      YW   E T E   ED W +TGD  V+ +DG
Sbjct: 269 VRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDG 328

Query: 65  FGSVVGRIKDLIIR-GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           +  ++GR  D II+ GG  +   EIE+ L  HP + E                       
Sbjct: 329 YYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEV---------------------- 366

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
             V G+ D   GE + A +     ++LT  ELR + + K
Sbjct: 367 -AVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAREK 404

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  116 bits (293), Expect = 2e-31
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 27/160 (16%)

Query: 6   VKVVDSDNRMVPYGQQGELLIR---GYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
           V++VD D R VP G+ GEL++R    +     Y+G  E T +    + W  TGD+    +
Sbjct: 256 VRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDE 314

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
           DGF   V R KD I R GENI   E+E  +  HP + EA                     
Sbjct: 315 DGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEA--------------------- 353

Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
              V  +  E   +E+ A + L    +L  + L  + + +
Sbjct: 354 --AVVAVPSELGEDEVKAVVVLRPGETLDPEALLEFCRDR 391

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  117 bits (295), Expect = 2e-31
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 26/156 (16%)

Query: 5   IVKVVDSDN--RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
            V++VD ++    +P G++GELL+RG      YW   E+T +    D W RTGD  V+ +
Sbjct: 399 EVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEE 457

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
           DGF  +V RIK+LII GG N+YP+E+E+ L  HP + +A                     
Sbjct: 458 DGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDA--------------------- 496

Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
              V G+  E   EE+ A++ L   ++L  + LR Y
Sbjct: 497 --AVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAY 530

Length = 573

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  112 bits (283), Expect = 9e-30
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 23/156 (14%)

Query: 5   IVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           + KV+D D   +P G+ GEL ++G   M  YW   E T EIL  D WL+TGD  ++ +DG
Sbjct: 388 LCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDG 447

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
           +  +V R KD+I+  G N+YP+E+ED L   P +L                  QC+    
Sbjct: 448 YMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVL------------------QCA---- 485

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160
              G+ DE+ GE I   + +    +LT++++  + +
Sbjct: 486 -AIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMR 520

Length = 562

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  110 bits (276), Expect = 8e-29
 Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 24/155 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V ++D D R V  G+ GE+ +RG   M  YW   E+T E    D WL TGD     +DGF
Sbjct: 350 VALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGF 408

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +V R KD+I+ GG N++P E+ED L  HP + +                         
Sbjct: 409 YYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQV-----------------------A 445

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160
           V G+ DE+ GE + A + L   +++   EL+ + K
Sbjct: 446 VIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVK 480

Length = 524

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  108 bits (271), Expect = 3e-28
 Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 24/153 (15%)

Query: 4   NIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
              +++D +   V  G+ GELLIRG   M  YW   + T+E + +D WL TGD   + +D
Sbjct: 326 CDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDED 384

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           GF  +VGR K++II GGENIYP E+E  +    D+ E                       
Sbjct: 385 GFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEV---------------------- 422

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
             V G +  + GE   A I    +S L E ++ 
Sbjct: 423 -AVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVI 454

Length = 496

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  105 bits (264), Expect = 3e-27
 Identities = 40/83 (48%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 22  GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLII-RGG 80
           GE+L+RG   M  Y+ N E T E L ED WL TGD   L +DGF  +  R KDLI+  GG
Sbjct: 283 GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGG 342

Query: 81  ENIYPSEIEDFLTTHPDILEAYV 103
           +NI P  IE+ L   P I +A V
Sbjct: 343 KNIAPQPIENALKASPYISQAVV 365

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  105 bits (263), Expect = 6e-27
 Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 24/154 (15%)

Query: 7   KVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFG 66
           KV+D D   +P G++GEL I+G   M  YW   E T E L  + W +TGD  V+  DGF 
Sbjct: 398 KVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFV 457

Query: 67  SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCV 126
            +V R KDLII  G N+YP+EIED +  HP +                    C+      
Sbjct: 458 RIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKV------------------ANCA-----A 494

Query: 127 YGIRDERMGEEIGASIRLTENSSLTEDELRGYFK 160
            G+ DER GE +   + +  +  L+ +EL+ Y K
Sbjct: 495 IGVPDERSGEAVKLFV-VARDPGLSVEELKAYCK 527

Length = 562

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  104 bits (261), Expect = 1e-26
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 26/159 (16%)

Query: 6   VKVVDSDNRMVPY-GQQ-GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
           +++VD +   +P+ G+  GEL++RG      Y+ + EKT+E L  D W RTGD  V+ +D
Sbjct: 352 LRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEE-LTRDGWFRTGDVAVIDED 410

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           G+  +  R KD+I  GGE I   E+E+ L  HP + EA                      
Sbjct: 411 GYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEA---------------------- 448

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
             V G+  E+ GE   A + L   + +TE+EL  +   K
Sbjct: 449 -AVVGVPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKK 486

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  103 bits (259), Expect = 2e-26
 Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 24/154 (15%)

Query: 6   VKVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
            K+VD      +P  Q GEL +RG   M  Y  N E T E + +D WL TGD     +DG
Sbjct: 341 AKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDG 400

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
           +  +V R+K+LI   G  + P+E+E  L +HP+I +A V                 IP  
Sbjct: 401 YLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAV-----------------IP-- 441

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
                 DE  GE   A +     S L+EDE+  +
Sbjct: 442 ----YPDEEAGEIPMAFVVRQPGSELSEDEVMQF 471

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  102 bits (256), Expect = 4e-26
 Identities = 44/97 (45%), Positives = 50/97 (51%)

Query: 7   KVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFG 66
           +VVD      P G  GELL+RG      YW   + T      D W RTGD      DGF 
Sbjct: 318 RVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFF 377

Query: 67  SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
            VV R KD+ I GGEN+YP+EIE  L  HP I E  V
Sbjct: 378 WVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAV 414

Length = 488

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  100 bits (252), Expect = 4e-26
 Identities = 47/154 (30%), Positives = 66/154 (42%), Gaps = 28/154 (18%)

Query: 8   VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE-----DNWLRTGDQFVLTK 62
           VVD D      G+ GEL+ RG   M  YW + E T E L       +  L TGD   + +
Sbjct: 184 VVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDE 243

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
           +G+   VGR  D+I   G  + P+EIE+ +  HP + EA                     
Sbjct: 244 EGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEA--------------------- 282

Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
              V G+ D  +G+ I A +   +  SL E EL 
Sbjct: 283 --AVIGVPDPLLGQAIVAVVVSADGESLDEKELL 314

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  100 bits (251), Expect = 1e-25
 Identities = 48/144 (33%), Positives = 64/144 (44%), Gaps = 25/144 (17%)

Query: 19  GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR 78
            Q GE+L+RG    L Y      T   L ED W  TGD   L  +G+  V+GR  DLII 
Sbjct: 258 PQDGEILVRGPSLFLGYLPQGGLTPP-LDEDGWFHTGDLGYLDAEGYLYVLGRRDDLIIS 316

Query: 79  GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEI 138
           GGENIYP EIE  L  HP + EA                        V G+ D+  G+  
Sbjct: 317 GGENIYPEEIEAVLLQHPAVEEA-----------------------AVVGVPDDEWGQRP 353

Query: 139 GASIRLTENSSLTEDELRGYFKGK 162
            A +    +  ++ +EL+ +   K
Sbjct: 354 VAFVV-PNDDPVSVEELQAFLADK 376

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  100 bits (252), Expect = 2e-25
 Identities = 53/160 (33%), Positives = 75/160 (46%), Gaps = 24/160 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           +KVVD   + +P G +GE   RG    + Y    E T   L E+ W  +GD   + + G+
Sbjct: 366 IKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGY 425

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             + GR KD+I+RGGENI   E+ED L  HP I +A                       C
Sbjct: 426 IKITGRKKDIIVRGGENISSREVEDILLQHPKIHDA-----------------------C 462

Query: 126 VYGIRDERMGEEIGASIRLTEN-SSLTEDELRGYFKGKAI 164
           V  + DER+GE   A + L     SLT +E+  +F  K +
Sbjct: 463 VVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRV 502

Length = 547

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 98.2 bits (245), Expect = 2e-24
 Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 25/151 (16%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           +K+VD D   VP G+ GEL ++G   ML YW   E T E++ +D WL TGD  V+ ++GF
Sbjct: 389 IKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGF 447

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +V R KD+I+  G N+YP+EIED +  HP +LE                         
Sbjct: 448 LRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEV-----------------------A 484

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELR 156
             G+  E  GE +   + + ++ SLTE+EL 
Sbjct: 485 AVGVPSEVSGEAVKIFV-VKKDPSLTEEELI 514

Length = 560

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 97.3 bits (243), Expect = 2e-24
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 30/162 (18%)

Query: 1   MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
             L I K    D  +VP  ++GE++++G      Y   E+ T+E   +D W +TGD   L
Sbjct: 316 CELKIEK----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYL 370

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
            ++GF  V+ R  DLII GGENIYP+EIE+ L +HP + EA V                 
Sbjct: 371 DEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVV---------------- 414

Query: 121 IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
                  G+ D++ G+   A +  +    +TE+ELR + + K
Sbjct: 415 -------GVPDDKWGQVPVAFVVKSG--EVTEEELRHFCEEK 447

Length = 483

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 97.3 bits (243), Expect = 3e-24
 Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 2   SLNIVKVVDSD-NRMVPY-GQQ-GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQF 58
            L  V VVD +  + VP  G+  GE+++RG   M  Y+ N E T+E      W  +GD  
Sbjct: 351 GLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLA 409

Query: 59  VLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQ 118
           V+  DG+  +  R KD+II GGENI   E+E  L  HP +LEA                 
Sbjct: 410 VVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEA----------------- 452

Query: 119 CSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDEL 155
                  V    DE+ GE   A + L   +S+TE+EL
Sbjct: 453 ------AVVARPDEKWGETPCAFVVLKPGASVTEEEL 483

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 96.6 bits (241), Expect = 7e-24
 Identities = 39/99 (39%), Positives = 49/99 (49%), Gaps = 11/99 (11%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           VK+ D           GE+L+RG   M  Y+ N E T E   ED W RTGD   L +DG+
Sbjct: 415 VKIAD----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGY 464

Query: 66  GSVVGRIKDLII-RGGENIYPSEIEDFLTTHPDILEAYV 103
             + GR K+LI    G+NI P  IE  L   P I +  V
Sbjct: 465 LVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICV 503

Length = 613

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 95.0 bits (237), Expect = 2e-23
 Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 24/149 (16%)

Query: 7   KVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFG 66
           +VVD D   V  G+ GE++ R    ML YW + EKT E      W  +GD  V+ ++G+ 
Sbjct: 353 RVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYI 411

Query: 67  SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCV 126
           +VV R KD+I  GGEN+   E+E+ L THP + E                         V
Sbjct: 412 TVVDRKKDMIKTGGENVASREVEEALYTHPAVAEV-----------------------AV 448

Query: 127 YGIRDERMGEEIGASIRLTENSSLTEDEL 155
            G+ D +  E + A +     +++TEDEL
Sbjct: 449 IGLPDPKWIEAVTAVVVPKAGATVTEDEL 477

Length = 523

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 3/99 (3%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKE-ILGEDNWLRTGDQFVLTKDG 64
           VK+VD D   V  G+ GEL +RG  +   YW   EKT+E  +GE  W RTGD++   +DG
Sbjct: 341 VKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETFVGE--WTRTGDKYYRDEDG 398

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
           +    GR  D++   G  + P E+ED L  HP +LEA V
Sbjct: 399 YYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAV 437

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 93.3 bits (232), Expect = 9e-23
 Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 1/98 (1%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
            +VVD +   VP G+ GE++ R    M  YW N E T E      W  +GD     ++G+
Sbjct: 356 ARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGY 414

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
             VV R KD+II GGENIY +E+E+ L +HPDI+E  V
Sbjct: 415 VWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAV 452

Length = 542

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 92.0 bits (229), Expect = 3e-22
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 24/151 (15%)

Query: 10  DSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVV 69
           D D   +P G+ GE+ IRG   M  YW   ++T +++  D + RTGD  V+ + G+  +V
Sbjct: 395 DDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIV 454

Query: 70  GRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGI 129
            R KD+I+  G N+YP+EIE+ + +HP +LE                           G+
Sbjct: 455 DRKKDMILVSGFNVYPNEIEEVVASHPGVLEV-----------------------AAVGV 491

Query: 130 RDERMGEEIGASIRLTENSSLTEDELRGYFK 160
            DE  GE +   + + ++ +LTE++++ + K
Sbjct: 492 PDEHSGEAVKLFV-VKKDPALTEEDVKAFCK 521

Length = 557

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 91.5 bits (227), Expect = 3e-22
 Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 24/157 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           +++ D   R +P   +GE+ +RG      YW + EKT E     +W R+GD   L ++GF
Sbjct: 330 IRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGF 388

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +  R KD+II GGENI  SE+E  +   P++ EA                        
Sbjct: 389 LYLTDRKKDMIISGGENIASSEVERVIYELPEVAEA-----------------------A 425

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
           V G+ D+R GE I A + L   ++LT + L  + + +
Sbjct: 426 VIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQR 462

Length = 497

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 91.7 bits (228), Expect = 3e-22
 Identities = 55/162 (33%), Positives = 71/162 (43%), Gaps = 27/162 (16%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V+VVD+D   +P GQ G L +RG  N   Y    +        D W  TGD   +  DG+
Sbjct: 377 VRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGDLARIDADGY 434

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             + GR KD+IIRGGENI   EIE  L  HP I                   Q +I  Y 
Sbjct: 435 IRISGRSKDVIIRGGENIPVVEIEALLYRHPAI------------------AQVAIVAY- 475

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK--AIQ 165
                DER+GE   A +      SL  +E+  + K +  A Q
Sbjct: 476 ----PDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQ 513

Length = 547

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 91.5 bits (228), Expect = 4e-22
 Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 14/106 (13%)

Query: 6   VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEI------LGEDNWLRTGD-Q 57
           V++VD +  R +P G+ GE+ +RG      YW   E T E         E  WLRTGD  
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425

Query: 58  FVLTKDG--FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA 101
           F+   DG  +  V GR+KDLII  G N YP +IE  +      L  
Sbjct: 426 FLH--DGELY--VTGRLKDLIIIRGRNHYPQDIEATVERAHPALRP 467

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 90.7 bits (225), Expect = 6e-22
 Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 25/152 (16%)

Query: 5   IVKVVDSDNRMVPYGQQGELLI-RGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
           IV++  S +  +P G++GEL++         Y    + T E L +D W RT D  V+   
Sbjct: 331 IVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKL-QDGWYRTSDVAVVDPS 389

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           G   ++GR+ D+II GGENI+PSE+E  L   P + E                       
Sbjct: 390 GTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEV---------------------- 427

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDEL 155
             V G+ DER G+ + A +   E  +L+ D L
Sbjct: 428 -VVIGLPDERWGQSVTACVVPREGETLSADAL 458

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 90.5 bits (225), Expect = 8e-22
 Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 26/158 (16%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V++ D + R +P G+ GE+ + G      Y+ N E   +    D W RTGD   L   GF
Sbjct: 351 VQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGF 409

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             + GR  D+ I GG N+YP EIE+ L THP + E                         
Sbjct: 410 LYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEV-----------------------A 446

Query: 126 VYGIRDERMGEEIG-ASIRLTENSSLTEDELRGYFKGK 162
           V G+ D   G E+G A     + + + E EL  +  GK
Sbjct: 447 VLGVPDPVWG-EVGVAVCVARDGAPVDEAELLAWLDGK 483

Length = 528

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 90.1 bits (224), Expect = 1e-21
 Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
            ++VD   R VP G  G+L +RG      YW   EKT+  L  D WLRTGD+F    DG+
Sbjct: 271 ARLVDESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTLR-DGWLRTGDRFSRDADGW 329

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
               GR  D+I   G+ + P E+E  L  HP + EA V
Sbjct: 330 YRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAV 367

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 89.6 bits (222), Expect = 2e-21
 Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 24/150 (16%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           +++V SD   +P G  GE+ +RG   +  Y G+   T      D WLRTGD   L+  G 
Sbjct: 365 IRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGD 423

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
            S+ GRIK+LI RGGE I P  +E  L +HP+++EA                        
Sbjct: 424 LSIRGRIKELINRGGEKISPERVEGVLASHPNVMEA-----------------------A 460

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDEL 155
           V+G+ D+  GE + A I   E++  T +EL
Sbjct: 461 VFGVPDQLYGEAVAAVIVPRESAPPTAEEL 490

Length = 534

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 29/161 (18%)

Query: 7   KVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN---WLRTGDQFVLTK 62
           +V+D      +P G++GE+++RG      YW   E T E   E +   + RTGD   + +
Sbjct: 263 RVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDE 322

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
           +G+   + R+K +I   G  ++P+E+E  L  HP +LE                      
Sbjct: 323 EGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEV--------------------- 361

Query: 123 GYCVYGIRDERMGEEIGASIRLTEN--SSLTEDELRGYFKG 161
             CV G  D R GE + A + L  +    +TE+++  + + 
Sbjct: 362 --CVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRE 400

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 89.1 bits (221), Expect = 3e-21
 Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 27/143 (18%)

Query: 22  GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSV--VGRIKDLIIRG 79
           G +L RG   ML YWG   +T  +L  D WL TGD  +   D  G++  +GR  D I  G
Sbjct: 386 GRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGD--IGWIDKAGNLWLIGRSNDRIKTG 443

Query: 80  GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIG 139
           GEN+YP E+E  L+ HP +                           V G+ D R+ E + 
Sbjct: 444 GENVYPEEVEAVLSQHPGVASV-----------------------VVVGVPDSRLTEMVV 480

Query: 140 ASIRLTENSSLTEDELRGYFKGK 162
           A +RL +    +++E     K  
Sbjct: 481 ACVRLRDGWIWSDNEKENAKKNL 503

Length = 563

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 88.2 bits (219), Expect = 5e-21
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 26/156 (16%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCN---MLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
            ++ D  NR +P G+ GE+ I+G         Y+ + + T ++L  D WL TGD   + +
Sbjct: 351 AEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE 410

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
           +GF   V R  ++I RGGEN+   E+E+ + THP I +                      
Sbjct: 411 EGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDI--------------------- 449

Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
              V GI+D    E I A + L E  +L+E+E   +
Sbjct: 450 --VVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAF 483

Length = 517

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 87.8 bits (218), Expect = 7e-21
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 25/154 (16%)

Query: 6   VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
            K+ D +   ++P G +GE+++R    +  YW   E T E L  D WL TGD   + + G
Sbjct: 398 FKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQG 456

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
           F   +GR K+++   G +++PSE+E  L  HP +L                       G 
Sbjct: 457 FLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVL-----------------------GS 493

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
            V G  D   G+   A ++L   + LT   L+ +
Sbjct: 494 AVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAW 527

Length = 567

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 87.7 bits (218), Expect = 7e-21
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 26/163 (15%)

Query: 3   LNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
           L  V+++D D   +P G+ G +          Y  + EKT        W+  GD   L +
Sbjct: 322 LGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDE 381

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
           DG+  +  R  D+II GG NIYP EIE+ L THP + +                      
Sbjct: 382 DGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADV--------------------- 420

Query: 123 GYCVYGIRDERMGEEIGASIRL---TENSSLTEDELRGYFKGK 162
              V+G+ DE MGE + A ++     +       EL  + +G+
Sbjct: 421 --AVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGR 461

Length = 502

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 85.6 bits (212), Expect = 4e-20
 Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 24/153 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V+VVD+D   V  G+ GELL RG   +  Y+   E        D + R+GD      DG+
Sbjct: 370 VRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGY 429

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             V GR+KD I RGGE I   E+E+ L  HP + +A                        
Sbjct: 430 LVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDA-----------------------A 466

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
           +  + DE +GE+  A I + +   L   +LR +
Sbjct: 467 LVAMPDELLGEKSCAFI-VVKEPPLRAAQLRRF 498

Length = 542

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 85.6 bits (212), Expect = 4e-20
 Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 22  GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
           GE++++G   M  Y    E T     +  W  TGD   L  +GF  V+GR  DLII GGE
Sbjct: 293 GEIMVKGANLMKGYLYQGELT-PAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGE 351

Query: 82  NIYPSEIEDFLTTHPDILEAYVS 104
           NIYP EIE  L  HP I EA V 
Sbjct: 352 NIYPEEIETVLYQHPGIQEAVVV 374

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 85.3 bits (211), Expect = 5e-20
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 24/149 (16%)

Query: 10  DSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVV 69
           D    ++  G+ GEL I+G   M  YW   E+T +++  D WL TGD   + + GF  +V
Sbjct: 397 DDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIV 456

Query: 70  GRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGI 129
            R KD+I+  G N+YP+EIED +   P +LE                           G+
Sbjct: 457 DRKKDMILVSGFNVYPNEIEDVIAMMPGVLEV-----------------------AAVGV 493

Query: 130 RDERMGEEIGASIRLTENSSLTEDELRGY 158
            DE+ GE +   I + ++ +LT ++++ +
Sbjct: 494 PDEKSGEIVKVVI-VKKDPALTAEDVKAH 521

Length = 560

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 85.0 bits (211), Expect = 8e-20
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 27/157 (17%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           VK++D +   VP G  G + +        Y     + K+I   D  L +GD     +DG 
Sbjct: 387 VKILDENGNEVPRGVVGRIFVGNGFPFEGYTDG--RDKQI--IDGLLSSGDVGYFDEDGL 442

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             V GR  D+I+ GGEN++P+E+ED L  HPD++EA V                      
Sbjct: 443 LFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVI--------------------- 481

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
             G+ DE  G+ + A +     ++L ED ++ Y +  
Sbjct: 482 --GVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDN 516

Length = 549

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 53/153 (34%), Positives = 72/153 (47%), Gaps = 27/153 (17%)

Query: 6   VKVVDSDN-RMVPY-GQ-QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
           V V+D D  + VP  G+  GE++ RG   M  Y  N + T+E      W  TGD  VL  
Sbjct: 370 VTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHP 428

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
           DG+  +  R KD+II GGENI   E+ED L  HP +L A V                + P
Sbjct: 429 DGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAV---------------VAKP 473

Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDEL 155
                   D + GE   A + L + +S TE+E+
Sbjct: 474 --------DPKWGEVPCAFVELKDGASATEEEI 498

Length = 545

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 83.3 bits (206), Expect = 3e-19
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 27/151 (17%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           ++++D D R VP G+ G + +R   +          TK+    D ++ +GD   L ++G 
Sbjct: 376 IRILDQDFREVPTGEVGTIFVRN--DTQFDGYTSGSTKDF--HDGFMASGDVGYLDENGR 431

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             VVGR  ++I+ GGEN+YP E+E  L THPD+ EA                        
Sbjct: 432 LFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEA-----------------------A 468

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELR 156
           V G+ DE+ G+ + A + L   +S T + L+
Sbjct: 469 VIGVDDEQYGQRLAAFVVLKPGASATPETLK 499

Length = 537

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 82.7 bits (204), Expect = 5e-19
 Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 29/161 (18%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED--NWLRTGDQFVLTKD 63
           VKV+D++   +  G+ G LL+RG  N   Y     K   +   D   W  TGD      +
Sbjct: 375 VKVIDANGAKLSQGETGRLLVRGCSNFGGYL----KRPHLNSTDAEGWFDTGDLAFQDAE 430

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           G+  + GR KD+IIRGGENI   EIE+ L  HP +                   Q +I  
Sbjct: 431 GYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAV------------------AQVAIVA 472

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
           Y      DER+GE   A +      +L    +  + K + +
Sbjct: 473 Y-----PDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKV 508

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 82.6 bits (205), Expect = 5e-19
 Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%)

Query: 6   VKVVDSDN-RMVPYGQQGELLIRGYCNMLR-YWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
           ++V D +    +P G+ G + ++G  N+ + YW   EKT E    D +  TGD   + + 
Sbjct: 332 LRVTDPETGAELPPGEIGMIEVKG-PNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDER 390

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
           G+  +VGR KDLII GG N+YP E+E  +   P ++E+ V
Sbjct: 391 GYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAV 430

Length = 504

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 82.3 bits (204), Expect = 6e-19
 Identities = 50/158 (31%), Positives = 66/158 (41%), Gaps = 29/158 (18%)

Query: 6   VKVVDSDN-----RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
           V+VV  D+     R     + G L I G  N+   +      K +  ED WL TGD   +
Sbjct: 397 VRVVILDDAGRYLRDCAVDEVGVLCIAG-PNVFSGYLEAAHNKGLWLEDGWLNTGDLGRI 455

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
             DG+  + GR KDLIIRGG NI P+ IE+ L  HP +  A                   
Sbjct: 456 DADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALA------------------- 496

Query: 121 IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
                  G  D   GE   A ++L   +S TE EL  +
Sbjct: 497 ----AAVGRPDAHAGELPVAYVQLKPGASATEAELLAF 530

Length = 632

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 82.1 bits (203), Expect = 8e-19
 Identities = 38/96 (39%), Positives = 48/96 (50%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V+VVD     V  G+ G LL RG      Y+   E        + +  TGD   LT +G+
Sbjct: 363 VRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGY 422

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA 101
             VVGR KD I RGGE I   EIE+ L  HP + +A
Sbjct: 423 IVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDA 458

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 78.9 bits (195), Expect = 6e-18
 Identities = 39/101 (38%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 6   VKVVD-----SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
           V+V       +  R    G+ G L IRG  N+   + N+        ED WL TGD   +
Sbjct: 186 VRVAKLDAGGALGRDCAPGEVGVLAIRG-PNVFPGYLNDAHNAGARLEDGWLNTGDLGRI 244

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA 101
             DG+  + GR KDLIIRGG NI P  IE+ L  HP +  A
Sbjct: 245 DADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALA 285

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 79.3 bits (196), Expect = 6e-18
 Identities = 51/154 (33%), Positives = 63/154 (40%), Gaps = 27/154 (17%)

Query: 5   IVKVVDSDNRMVPYGQQGELLIR--GYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
            V VVD   R VP G+ GE+ ++       L YW N E T      D WL TGD      
Sbjct: 270 EVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD-WLLTGDLGRRDA 328

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
           DG+    GR  D+I   G  I P+EIE+ L  HP +LEA                     
Sbjct: 329 DGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEA--------------------- 367

Query: 123 GYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
              V G+ D   GE + A + L E      DEL 
Sbjct: 368 --AVVGVPDPERGEIVKAFVVLAEGVE-PSDELA 398

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 79.0 bits (195), Expect = 8e-18
 Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 27/154 (17%)

Query: 5   IVKVVDSDNRMVPYGQQGELLIRG---YCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLT 61
             +VVD  ++ +P G+ GELL+R    +     Y+G  EKT E    + W  TGD+ V  
Sbjct: 353 EARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRD 411

Query: 62  KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI 121
            DG+   V RIKD I R GENI   E+E  L +HP +  A                    
Sbjct: 412 ADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAA-------------------- 451

Query: 122 PGYCVYGIRDERMGEEIGASIRLTENSSLTEDEL 155
               V+ +  E   +E+ A++ L + ++L    L
Sbjct: 452 ---AVFPVPSELGEDEVMAAVVLRDGTALEPVAL 482

Length = 542

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 78.8 bits (195), Expect = 9e-18
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 19  GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLI-I 77
            + GE+LIR    M  Y+ + EKT E   ED WL TGD+  + +DGF  + GR+K+L   
Sbjct: 340 SEDGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKT 399

Query: 78  RGGENIYPSEIEDFLTTHPDI 98
             G+ + P+ IE+ L+ +P +
Sbjct: 400 SKGKYVAPAPIENLLSANPHV 420

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD-QFVLTKDG 64
           +++VD D  ++P G+ G L +RG      Y+ N E   E   ED W RTGD  F+   DG
Sbjct: 385 IRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL--HDG 442

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
             ++ GR KD+II  G N Y  EIE  +   P +  ++ 
Sbjct: 443 RLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFT 481

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 78.5 bits (193), Expect = 1e-17
 Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 28/164 (17%)

Query: 1   MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLR-YWGNEEKTKEILGEDNWLRTGDQFV 59
           + L++V + D   +++P G+ GEL IRG  N+ R YW   E++ E    D +L TGD   
Sbjct: 374 IELDVVSL-DDPTKVLPPGEVGELRIRG-PNVTRGYWNRPEESAEAFVGDRFL-TGDIGY 430

Query: 60  LTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQC 119
           +  DG+  +V R KD+II GG N+YP  IE  +  HP + E                   
Sbjct: 431 MDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEV------------------ 472

Query: 120 SIPGYCVYGIRDERMGEEIGASIRLTENSS-LTEDELRGYFKGK 162
                 V GI D+  GE   A ++L   +   + DELR +  GK
Sbjct: 473 -----IVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGK 511

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 21  QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR-G 79
            GE+ I G    + Y   EEKT+E + ED WL +GD   L  DGF  + GRIK+LII  G
Sbjct: 390 IGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAG 449

Query: 80  GENIYPSEIEDFLTTHPDIL 99
           GEN+ P  IE+ +     I+
Sbjct: 450 GENVPPVPIEEAVKKELPII 469

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 77.3 bits (191), Expect = 4e-17
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 24/154 (15%)

Query: 6   VKVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           +K+VD +    +P  Q GE+ IRG   M  Y  + E T   + +D WL TGD   +  D 
Sbjct: 367 LKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDD 426

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
              +V R+K+LI   G  + P+E+E  L +HP I +A                       
Sbjct: 427 ELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADA----------------------- 463

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
            V  ++DE  GE   A +  +  S +TEDE++ +
Sbjct: 464 AVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQF 497

Length = 537

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 76.9 bits (190), Expect = 5e-17
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 27/142 (19%)

Query: 7   KVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN---WLRTGDQFVLTK 62
           +V+D +    +P G+ GE+++ G      YW   E T E   E +   + RTGD   + +
Sbjct: 369 RVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDE 428

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIP 122
           +G+  +  R+K +I   G  ++P+E+E+ L  HP I EA                     
Sbjct: 429 EGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEA--------------------- 467

Query: 123 GYCVYGIRDERMGEEIGASIRL 144
             CV    D R GE + A + L
Sbjct: 468 --CVIATPDPRRGETVKAVVVL 487

Length = 546

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 76.6 bits (188), Expect = 6e-17
 Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 6   VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           VK +D D  R +P    GEL +R  C M  Y+ N+E+T   + ED WL TGD   +  DG
Sbjct: 372 VKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDG 431

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
              +V RIK+LI   G  + P+E+E  L THP + +A V
Sbjct: 432 DIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV 470

Length = 546

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 76.6 bits (189), Expect = 6e-17
 Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 25/159 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V V D+D   +P G+ G L+ RG      Y+ + +        + +  +GD   +  DG+
Sbjct: 365 VWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGY 424

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
            +VVGR KD I RGGE I   EIE+ L  HP ++ A             L+   S+    
Sbjct: 425 ITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHA------------ALV---SME--- 466

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
                DE MGE+  A + + E   L   +LR + + + I
Sbjct: 467 -----DELMGEKSCAFLVVKE--PLKAVQLRRFLREQGI 498

Length = 536

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 76.3 bits (188), Expect = 7e-17
 Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 25/157 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNML-RYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           ++ VD D R +P G+ GE+  R   N    Y    EK  EI     ++ +GD   L  DG
Sbjct: 335 LRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEI-DRGGFITSGDVGYLDADG 393

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
           +  +  R +D++I GG NIYP+EIE  L   P +                    C+    
Sbjct: 394 YLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGV------------------HDCA---- 431

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG 161
            V+GI D   GE + A +     ++L E ++R   K 
Sbjct: 432 -VFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKA 467

Length = 509

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 76.2 bits (188), Expect = 7e-17
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCN----MLRYWGNEEKTKEILGEDNWLRTGDQFVLT 61
           V ++D +   +P G++G++ +R           Y  + EKT+  +  D W  TGD+ +  
Sbjct: 260 VAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGD-WYLTGDRAIKD 318

Query: 62  KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
           +DG+   VGR  D+I   G  I P E+E  L  HP + EA V
Sbjct: 319 EDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAV 360

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 76.4 bits (188), Expect = 8e-17
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 1/99 (1%)

Query: 7   KVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           KVVD S   ++P G  GEL I+G   M  Y  N + T+  + +D WLRTGD     +DG+
Sbjct: 386 KVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGY 445

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVS 104
             +V R+K++I   G  I P+++E  L +HP+I++A V+
Sbjct: 446 LYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVT 484

Length = 560

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 76.2 bits (188), Expect = 8e-17
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           +++VD    ++P    G + I+G      Y+ N E TK+ +  D WL+TGD   L ++G 
Sbjct: 325 IRIVDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFL-RNGR 383

Query: 66  GSVVGRIKDLIIRGGENIYPSEIE 89
             + GR KD+II  G+N YP +IE
Sbjct: 384 LVITGRAKDIIIVNGQNYYPHDIE 407

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 6   VKVVDS-DNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           V+  D  D  ++P G+ GE+ IR    M  Y  N + T   L +D + RTGD      DG
Sbjct: 361 VRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
                 R+ D +  GG  + P+EIE  L   P +  A V
Sbjct: 421 QFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQV 459

Length = 540

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 40/101 (39%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRG--YCNMLRYWGNEEKTKE-ILGEDNWLRTGDQFVLTK 62
           V+ VD +   VP G  GEL++R       L YW + E+ KE   G   W RTGD     +
Sbjct: 352 VRRVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR--WYRTGDWAERDE 408

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
           DG+  + GR  D+I   G+ I P EIE  L  HP + EA V
Sbjct: 409 DGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAV 449

Length = 528

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.5 bits (185), Expect = 2e-16
 Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 24/140 (17%)

Query: 16  VPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDL 75
           +P G+ GE++++G   M  YW   E+T  +L +D WL TGD   + +DGF  V  R KD+
Sbjct: 398 LPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDM 456

Query: 76  IIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMG 135
           I+  G N+YP E+E+ L  H  + E                           G+ D   G
Sbjct: 457 IVASGFNVYPREVEEVLYEHEKVQEV-----------------------VTIGVPDPYRG 493

Query: 136 EEIGASIRLTENSSLTEDEL 155
           E + A + L E +  +E+EL
Sbjct: 494 ETVKAFVVLKEGTECSEEEL 513

Length = 563

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 33/159 (20%)

Query: 7   KVVDSDNRMVPYGQQGELLIRGY--CNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           ++VD     VP G+ G L +RG   C   RY  +E + + +   D W  TGD F   +DG
Sbjct: 325 RIVDDQGNEVPRGEAGRLAVRGPTGC---RYLDDERQQEYV--RDGWNVTGDIFRQDEDG 379

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
           +   V R  D+I+  G NI   E+ED L THPD+ E                  C+    
Sbjct: 380 YFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAE------------------CA---- 417

Query: 125 CVYGIRDERMGEEIGASIRLTEN---SSLTEDELRGYFK 160
            V G+ DE  G+ + A I L +    + L  + L+ + K
Sbjct: 418 -VIGVPDEERGQIVCAHIVLRDGTKATELLAERLQDFVK 455

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 45/148 (30%), Positives = 57/148 (38%), Gaps = 26/148 (17%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN---WLRTGDQFVLTK 62
             ++D D R VP G++GEL+I G      Y  N EKT +   +D    W RTGD   L  
Sbjct: 283 ALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLED 342

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDI----------------LEAYVSEY 106
           DG    +GR    I   G  I   EIE  L   P +                L A+V   
Sbjct: 343 DGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGK 402

Query: 107 RLKLDFTGLLQQCS-------IPGYCVY 127
              LD   L ++         IP   VY
Sbjct: 403 EGALDTKALKKELKKRLPPYMIPRRFVY 430

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 28/160 (17%)

Query: 3   LNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED-NWLRTGDQFVLT 61
              + ++D D   +P G+ G +   G      Y  +  KT E    D  W   GD   + 
Sbjct: 335 FGDLHILDDDGAELPPGEPGTIWFEG-GRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVD 393

Query: 62  KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI 121
           +DG+  +  R   +II GG NIYP E E+ L THP + +A                    
Sbjct: 394 EDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADA-------------------- 433

Query: 122 PGYCVYGIRDERMGEEIGASIRLTENSSLTED---ELRGY 158
               V+G+ +E +GEE+ A ++  +          EL  +
Sbjct: 434 ---AVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAF 470

Length = 511

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 71.6 bits (175), Expect = 3e-15
 Identities = 45/157 (28%), Positives = 64/157 (40%), Gaps = 27/157 (17%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V+++D +NR V     G + + G     RY     K       D    TGD   L   G 
Sbjct: 356 VRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGKAVV----DGMTSTGDMGYLDNAGR 411

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +VGR  D+II GGEN+YP  +E+ L  HP + +                         
Sbjct: 412 LFIVGREDDMIISGGENVYPRAVENALAAHPAVADN-----------------------A 448

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
           V G+ DER G  + A + L   S +   +LR Y K +
Sbjct: 449 VIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDR 485

Length = 516

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 5   IVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQ-FVLTKD 63
            +++ +     +P    G + +RG   M  Y+ +EE     L  D WL TGD  ++L  D
Sbjct: 395 EIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRDEESQDV-LAADGWLDTGDLGYLL--D 451

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDI 98
           G+  + GR KDLII  G NI+P +IE      P++
Sbjct: 452 GYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPEL 486

Length = 579

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 39/101 (38%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 6   VKVVDSDNRMVPYGQQ--GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
            ++VD D   VP+  +  GEL +RG      Y    + T      D W RTGD  V+  D
Sbjct: 304 TRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPD 363

Query: 64  GFGSVVGRIK-DLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
           G   +VGR   DLI  GG  I   EIE  L  HP + EA V
Sbjct: 364 GMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAV 404

Length = 471

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V+VVD D +++P    G + +RG   +   +   +        D WL TGD   LT++G 
Sbjct: 371 VRVVDEDGQVLPPRGVGVIELRGES-VTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGE 429

Query: 66  GSVVGRIKDLIIRGGENIYPSEIE 89
             V GR+KD+II  G NIYP++IE
Sbjct: 430 VVVCGRVKDVIIMAGRNIYPTDIE 453

Length = 545

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 28/156 (17%)

Query: 5    IVKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN---WLRTGDQFVL 60
             V++VD +    +P G+ G +LI G   M  Y G+ EKT E++ + +   W  TGD+  L
Sbjct: 970  AVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029

Query: 61   TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
             +DGF ++  R       GGE +    +E+ L      L                     
Sbjct: 1030 DEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAK---ALGG------------------E 1068

Query: 121  IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
               + V  + DE+ GE++   + L    +   +EL+
Sbjct: 1069 EVVFAVTAVPDEKKGEKL---VVLHTCGAEDVEELK 1101

Length = 1146

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 31/159 (19%)

Query: 6   VKVVDSDNRMVP--YGQQGELLIRGYCNMLRYWGNEEKT----KEILGEDNWLRTGDQFV 59
             V+D D   VP   G+ G +   G    L Y+ + EKT    +EI G   +   GD   
Sbjct: 198 TVVLDEDGSEVPPGSGEVGWIARGGRVP-LGYYKDPEKTAKTFREIDGV-RYAVPGDFAR 255

Query: 60  LTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQC 119
           +  DG  +++GR    I  GGE ++P E+E+ L  HPD+ +A                  
Sbjct: 256 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADA------------------ 297

Query: 120 SIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
                 V G+ DER G+ + A ++L   + L   ELR +
Sbjct: 298 -----LVVGVPDERWGQRVVAVVQLRAGAGLDLAELRDH 331

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 29/158 (18%)

Query: 6   VKVVDSDNRMVPYGQQ--GELLIRGYCNMLRYWGNEEKTKEILGEDNWLR---TGDQFVL 60
             V+D D   V  G    G +  RG+   L Y+ + EKT E     + +R    GD+  +
Sbjct: 360 TVVLDEDGNPVEPGSGEIGWIARRGHIP-LGYYKDPEKTAETFPTIDGVRYAIPGDRARV 418

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
             DG  +++GR    I  GGE ++P E+E+ L  HPD+ +A V                 
Sbjct: 419 EADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVV---------------- 462

Query: 121 IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
                  G+ DER G+E+ A ++L E +     ELR +
Sbjct: 463 -------GVPDERWGQEVVAVVQLREGARPDLAELRAH 493

Length = 533

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 68.5 bits (167), Expect = 4e-14
 Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 22  GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
           G L I+   NML YW N E+T E+L  D W+ TGD     +DGF  + GR  ++II GG 
Sbjct: 375 GTLWIKSPANMLGYWNNPERTAEVLI-DGWVNTGDLLERREDGFFYIKGRSSEMIICGGV 433

Query: 82  NIYPSEIEDFLTTHPDILEAYVSE 105
           NI P E++        + EA   E
Sbjct: 434 NIAPDEVDRIAEGVSGVREAACYE 457

Length = 540

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 68.3 bits (167), Expect = 4e-14
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 22  GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
           GE+++RG   M  Y  N +  +E    + W  +GD  V   DG+  +  R KD+II GGE
Sbjct: 403 GEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGE 461

Query: 82  NIYPSEIEDFLTTHPDILEAYV 103
           NI   E+E+ + THP +LEA V
Sbjct: 462 NISSLEVENVVYTHPAVLEASV 483

Length = 567

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 67.9 bits (166), Expect = 6e-14
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 6/103 (5%)

Query: 6   VKVVDSDNRMVPYGQQGELLI-----RGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
           V+++D +  ++P G +G++ I     R +C    Y  N EKT   +  D ++ TGD+ ++
Sbjct: 354 VQIIDDNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIM 412

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
            +DG+   VGR  D+I   G  I P E+E  L  HP ++E+ V
Sbjct: 413 DEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAV 455

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 48/158 (30%), Positives = 63/158 (39%), Gaps = 27/158 (17%)

Query: 10  DSDNRMVPYGQQGELLIR-GYCNMLR-YWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGS 67
           D    +   GQ GEL ++ G+ +M R Y GNEE+       D W  TGD     +DG+  
Sbjct: 279 DGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSF-VDGWYLTGDLAYRDEDGYFW 337

Query: 68  VVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVY 127
            VGR  D+I   G  + P E+E  L  HP + EA V                        
Sbjct: 338 FVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVI----------------------- 374

Query: 128 GIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAIQ 165
           G  D   GE + A + L      +E ELR      A Q
Sbjct: 375 GKPDPVAGEIVKAFVSLRPGFEPSE-ELRRELLTFARQ 411

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 67.9 bits (166), Expect = 6e-14
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           +++V    + V  G+ GELLI G  +   YW N  KT++   +  W R+GD++V   DG 
Sbjct: 341 LRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGS 399

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
            +  GR  D++   G  + P EIE  L  HP +LEA V
Sbjct: 400 YTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAV 437

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 66.2 bits (161), Expect = 3e-13
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 22  GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
           GE++I+G   M  Y  N + T E   +  WL TGD  V+  DG   +  R KD+II GGE
Sbjct: 393 GEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGE 451

Query: 82  NIYPSEIEDFLTTHPDILEAYV 103
           NI   E+E+ L  +P +LE  V
Sbjct: 452 NISSVEVENVLYKYPKVLETAV 473

Length = 579

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 13/97 (13%)

Query: 5   IVKVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILG-----------EDNWL 52
            V++VD D  +  P G  GE+ + G      YW   E+T+   G           E  WL
Sbjct: 380 TVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWL 439

Query: 53  RTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIE 89
           RTGD   +++     +VGRIKDL+I  G N YP +IE
Sbjct: 440 RTGDLGFISEGEL-FIVGRIKDLLIVDGRNHYPDDIE 475

Length = 578

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 36/165 (21%)

Query: 6   VKVVDSDNRMVPYGQQGELLIR-------GYCNMLRYWGNEEKTKEILGEDNWLRTGDQF 58
           + ++D D +    G++GE++IR       G      Y+ + E+T E+   D +  TGD  
Sbjct: 364 IDIIDPDGKSCEVGEEGEIVIRTSDGKPLGLFM--GYYRDPERTAEVW-HDGYYHTGDTA 420

Query: 59  VLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQ 118
            + +DG+   VGR  DLI   G  I P E+E  L  HP +LE  V+              
Sbjct: 421 WMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVT-------------- 466

Query: 119 CSIPGYCVYGIRDERMGEEIGASIRLTENSSLTED---ELRGYFK 160
                    G+ D   G+ + A+I LT+    +E+   EL+ + K
Sbjct: 467 ---------GVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVK 502

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 12/108 (11%)

Query: 4   NIVKVVD-------SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD 56
             +K+VD       + +       +GE+ IRG      Y+ N EKT E   ED W  TGD
Sbjct: 330 CEIKLVDVPEMGYFAKDDP----PRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGD 385

Query: 57  QFVLTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
                 DG   ++ R K+L  +  GE +   ++E+   + P + +  V
Sbjct: 386 IGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICV 433

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLR----YWGNEEKTKEILGEDNWLRTGDQFVLT 61
           + V+D D + +  G+ G+L I    + L     YW + EKT E++    W  TGD     
Sbjct: 270 IAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELI-AGRWYVTGDLVERD 328

Query: 62  KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
           +DG+   +GR  D+II  G  I P ++E  L  HP + EA V
Sbjct: 329 EDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAV 370

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 41/108 (37%), Positives = 45/108 (41%), Gaps = 16/108 (14%)

Query: 8   VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED--------NWLRTGDQFV 59
           V+D D R VP G  GEL I G      Y    E T E    D           RTGD   
Sbjct: 306 VLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVR 365

Query: 60  LTKDG---FGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
              DG   F   +GRI D + IR G  I   EIE  L  HP + EA V
Sbjct: 366 YLPDGNLEF---LGRIDDQVKIR-GYRIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 8   VVDSDNRMVPYGQQGELLIR-GYCNMLR-YWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           +VD     +P  + G L I+ G+ +M+R  W N EK +      +W  +GD   + +DG+
Sbjct: 389 IVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGY 447

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
               GR+ D+I   GE + P E+E  L  HP + EA V
Sbjct: 448 FWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGV 485

Length = 570

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 28/159 (17%)

Query: 6   VKVVDSDNRMVPYGQQ--GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
           +K+ D   + +P+  +  G L +RG      Y+  +    EIL +D +  TGD   +   
Sbjct: 367 MKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAY 423

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           G+  +  R KD+I  GGE I   ++E+    HP + EA                      
Sbjct: 424 GYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEA---------------------- 461

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
             V G+   +  E     ++L    + T +E+  Y  GK
Sbjct: 462 -AVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGK 499

Length = 542

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 59.8 bits (145), Expect = 4e-11
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 17/114 (14%)

Query: 7   KVVDSDNRMVPYGQ-QGELLIRGYCNMLRYWGNE----------------EKTKEILGED 49
           ++V+    M    + +GE+ +RG      Y+ +                 E   +    D
Sbjct: 370 RIVNDGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTAD 429

Query: 50  NWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
            WLRTGD   +T+DGF ++  R +D+I  GGE IY +++E+++   P+++E  V
Sbjct: 430 GWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAV 483

Length = 576

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 22  GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
           GE+ IRG   M  Y G        +  D+W  TGD   L   G   V GR K+LI   G 
Sbjct: 373 GEIEIRGASMMSGYLGQAP-----IDPDDWFPTGDLGYLVDGGL-VVCGRAKELITVAGR 426

Query: 82  NIYPSEIE 89
           NI+P+EIE
Sbjct: 427 NIFPTEIE 434

Length = 525

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 7   KVVDSDNRMVPYG--QQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           K+V  D R +P+     G+L +RG   + RY+  +         D W  TGD   +  DG
Sbjct: 368 KIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPLV----DGWFPTGDVATIDADG 423

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA 101
           F  +  R KD+I  GGE I   +IE+    HP + EA
Sbjct: 424 FMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEA 460

Length = 539

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 25/156 (16%)

Query: 3   LNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN--WLRTGDQFVL 60
           L  + + D D   +P G+ G +         RY  + EKT       +  W   GD   +
Sbjct: 330 LGDLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSV 389

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
            +DG+  +  R   +II GG NIYP E E+ LT HP + +                    
Sbjct: 390 DEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDV------------------- 430

Query: 121 IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
                V G+ D  MGE++ A I+L E    +++  R
Sbjct: 431 ----AVIGVPDPEMGEQVKAVIQLVEGIRGSDELAR 462

Length = 501

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 27/153 (17%)

Query: 6   VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEI-LGEDNWLRTGDQFVLTKD 63
           V++V  + +  +P G+ G LL+RG   M  Y  NEEKT E+ +  D W  TGD   + +D
Sbjct: 322 VRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDED 381

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           GF ++VGR+K     GGE +  + +E+ L+              L  D            
Sbjct: 382 GFLTIVGRLKRFAKIGGEMVSLTAVEELLSEI------------LPED-----SLH---- 420

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
                + DE+ GE+I   + LT    L  +EL 
Sbjct: 421 -AAVEVPDEKKGEKI---VLLTTTEDLDPEELN 449

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 21/101 (20%)

Query: 8   VVDSDNRM-VPYGQQGELLIRGYCNMLR-YWGNEEKTKE----ILG-------------E 48
           +VD +    +P GQ GE+ + G  N+   YWG  E+T      IL              +
Sbjct: 404 IVDPETASELPDGQIGEIWLHGN-NIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDD 462

Query: 49  DNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIE 89
             W+RTGD  V   DG   + GR+KDL+I  G N YP ++E
Sbjct: 463 ALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLE 502

Length = 631

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 56.0 bits (136), Expect = 7e-10
 Identities = 37/105 (35%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN------WLRTGDQFV 59
           V ++D + + VP G  GEL + G    L Y    E T E    D         RTGD   
Sbjct: 308 VYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLAR 367

Query: 60  LTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
              DG    +GRI   + IRG   I   EIE  L  HP + EA V
Sbjct: 368 WRPDGNIEFLGRIDRQVKIRG-FRIELGEIEQALLQHPGVREAAV 411

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 55.7 bits (135), Expect = 9e-10
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 21  QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG- 79
            GE+L+RG   ML Y G    T      D+W  TGD   L ++G+  + GR K+LII   
Sbjct: 304 DGEILVRG-SLMLGYLGEPPAT------DDWWATGDLGHLDEEGYLYINGRKKNLIITSF 356

Query: 80  GENIYPSEIEDFLTTHPDILEAYV 103
           G N+ P  +E  L   P I +A V
Sbjct: 357 GRNVSPEWVESELQQAPAIAQAVV 380

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 16  VPYGQQGELLIRGYCNMLR----YWGNEEKT-KEILGE-----DNWLRTGDQFVLTKDGF 65
            P G+ GE+L R           Y  NE+ T  ++L +     D W RTGD      DG 
Sbjct: 294 APVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGR 353

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
              + R+ D      EN+   E+ D L   P + EA V
Sbjct: 354 WYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANV 391

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 24/109 (22%)

Query: 48  EDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYR 107
           E  W RT D   L  DG  +V+GR  D I  GG  + P  +E  L THP + +       
Sbjct: 232 EPGWFRTDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADC------ 284

Query: 108 LKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
                             V+G+ D+R+G+ + A++      + T + LR
Sbjct: 285 -----------------AVFGLPDDRLGQRVVAAVVGDGGPAPTLEALR 316

Length = 358

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 24/66 (36%), Positives = 33/66 (50%)

Query: 38  NEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPD 97
                   L  D W+   D     ++GF  +VGR K++I+ GG NI+P EIE  L  HP 
Sbjct: 349 IGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPA 408

Query: 98  ILEAYV 103
           + E  V
Sbjct: 409 VDEIVV 414

Length = 487

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 28/157 (17%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYC---NMLRYWGNEEKTKEI-LGED-NWLRTGDQFVL 60
           V+V+D     +  G+ G ++I+       +L  WG++E+ K++ L +   +  TGD    
Sbjct: 412 VQVLDETGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYK 471

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
            +DG+  V+GR  D+I   G  +   E+E+ +  HPD+ E                  C+
Sbjct: 472 DEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAE------------------CA 513

Query: 121 IPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRG 157
                V G+RDE  G+     + L ++  +  D+L  
Sbjct: 514 -----VVGVRDELKGQVPLGLVVLKDDCKIDADQLEN 545

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 21/92 (22%)

Query: 17  PYGQQGELLIRGYCNMLR-YWGNEEKTKEILG------------------EDNWLRTGDQ 57
           P G+ GE+ + G  N+ R YWG  E+T+   G                  +  WLRTGD 
Sbjct: 425 PDGEVGEIWLHGD-NIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDL 483

Query: 58  FVLTKDGFGSVVGRIKDLIIRGGENIYPSEIE 89
            V   DG   + GRI DLI+  G N YP +IE
Sbjct: 484 GVYL-DGELYITGRIADLIVIDGRNHYPQDIE 514

Length = 612

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 54.0 bits (131), Expect = 3e-09
 Identities = 41/112 (36%), Positives = 46/112 (41%), Gaps = 21/112 (18%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL-------RTGDQF 58
           V V+D D R VP G  GEL I G      Y    E T E    D +        RTGD  
Sbjct: 276 VYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLA 335

Query: 59  VLTKDG---FGSVVGRIKDLI-IRGGENIY---PSEIEDFLTTHPDILEAYV 103
               DG   F   +GR  D + IRG    Y     EIE  L  HP + EA V
Sbjct: 336 RWLPDGNLEF---LGRADDQVKIRG----YRIELGEIEAALLAHPGVREAVV 380

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 24/124 (19%)

Query: 35  YWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTT 94
           Y+ N E T E +       +GD      DG+    GR  D +   GEN+  + IE  L  
Sbjct: 366 YYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLR 424

Query: 95  HPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDE 154
           HP I                           VY + DER+G+++ A++ L + ++   D 
Sbjct: 425 HPAINRV-----------------------AVYAVPDERVGDQVMAALVLRDGATFDPDA 461

Query: 155 LRGY 158
              +
Sbjct: 462 FAAF 465

Length = 540

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 53.7 bits (130), Expect = 5e-09
 Identities = 38/104 (36%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 8   VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED-------NWLRTGDQFVL 60
           V+D D + VP G  GEL I G      Y G  E T E    D          RTGD    
Sbjct: 271 VLDEDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRW 330

Query: 61  TKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
             DG    +GR  D + IR G  I   EIE  L  HP + +A V
Sbjct: 331 RPDGRLEYLGRADDQVKIR-GFRIELGEIEAALRAHPGVADAVV 373

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 25/157 (15%)

Query: 8   VVDSDNRMVPYGQQGELL-IRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFG 66
                  +      GEL+   G      Y+ + E   E +       +GD      DG+ 
Sbjct: 339 EDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYA 397

Query: 67  SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCV 126
              GR+ D +   GEN+  + IE  L  +PD  E                         V
Sbjct: 398 YFAGRLGDWMRVDGENLGTAPIERILLRYPDATEV-----------------------AV 434

Query: 127 YGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKA 163
           Y + D  +G+++ A++ L   +    D    +   + 
Sbjct: 435 YAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQP 471

Length = 529

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 38/104 (36%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 8   VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKE--ILGEDN--WLRTGDQFVLTKD 63
           V+D D R  P    GEL I G    L YWG+ E T E  I         RTGD      D
Sbjct: 313 VLDEDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPD 372

Query: 64  GFGSVVGR----IKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
           G    +GR    +K   IR G  +   EIE  L  HP +  A V
Sbjct: 373 GTIEFLGRADHQVK---IR-GYRVELGEIEAALARHPGVQRAVV 412

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 36/161 (22%), Positives = 56/161 (34%), Gaps = 37/161 (22%)

Query: 8   VVDSDNRM--VPYGQQGELLIRGYCNMLR----YWGNEEKTKEILGE-----DNWLRTGD 56
           + D++     VP G+ G LL             Y  +E   K+IL +     D +  TGD
Sbjct: 267 IRDANGFCIKVPPGEVGLLLGEI--TDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGD 324

Query: 57  QFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLL 116
                  G+   V R+ D     GEN+  +E+E+ L  HP + EA               
Sbjct: 325 LVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEAN-------------- 370

Query: 117 QQCSIPGYCVYGIRDERMGEEIG-ASIRLTENSSLTEDELR 156
                    VYG+         G A++ L   ++       
Sbjct: 371 ---------VYGVEVPGTEGRAGMAALTLAPGAAFDPQAFA 402

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 22  GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
           GE+ +RG    L YW    +   ++ ++ W  T D+    ++G  +++GR+ +L   GGE
Sbjct: 305 GEIWLRGASLALGYWRQG-QLVPLVNDEGWFATRDRGEW-QNGELTILGRLDNLFFSGGE 362

Query: 82  NIYPSEIEDFLTTHPDILEAYV 103
            I P EIE  +  HP + + +V
Sbjct: 363 GIQPEEIERVINQHPLVQQVFV 384

Length = 458

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 24/105 (22%)

Query: 52  LRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLD 111
             T D   L   G+  ++GR    II GGEN+YP+E+E  +                   
Sbjct: 326 FETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILA----------------- 368

Query: 112 FTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
            TGL+Q       CV G+ D   GE + A I + ++ S++ +EL+
Sbjct: 369 -TGLVQDV-----CVLGLPDPHWGEVVTA-IYVPKDPSISLEELK 406

Length = 452

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 6   VKVVDSDNRMV-PYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN---WLRTGDQFVLT 61
           V +VD  +  V    + GE+   G      YW N E + +   E +   WLRTGD     
Sbjct: 381 VLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGD-LGFL 439

Query: 62  KDGFGSVVGRIKDLIIRGGENIYPSEIE 89
           +DG   V GR+KD++I  G N+YP +IE
Sbjct: 440 RDGELFVTGRLKDMLIVRGHNLYPQDIE 467

Length = 4334

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRG-YCNMLR-YWGNEEKTKEILG---EDNWLRTGDQFVL 60
             VVD D R V  G+ GEL++R  +  M R +W + E+  E         W   GD  ++
Sbjct: 288 ADVVDEDGRPVR-GEVGELVVRAPWPGMTRGFWRDPERYLETYWSRFPGVW-VHGDWALV 345

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA 101
            +DG+  ++GR  D I   G+ + P+EIE  L +HP + EA
Sbjct: 346 DEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEA 386

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLR-YWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           + ++D   R +P G  GEL I G   +   Y    + T E        RTGD      DG
Sbjct: 552 LYILDQGLRPLPLGVPGELYIAG-LGLALGYLNRPDLTAERFIALRLYRTGDLARPLADG 610

Query: 65  FGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHP 96
               +GR    + IR G  I   EIE  L   P
Sbjct: 611 ALEYLGRKDSQVKIR-GFRIELGEIEAALAEQP 642

Length = 642

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 22  GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDL 75
           GE+L+RG      Y+  EE T+E+L ED W  TGD   +  +G   ++GR+K L
Sbjct: 508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKAL 561

Length = 700

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           ++VV  D      G +G+L +RG      YW   +     +  + WL T D+  +  DG+
Sbjct: 324 IRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDS---PVANEGWLDTRDRVCIDSDGW 380

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTG--LLQQCSIP 122
            +   R  D  + GG N+ P E+E  +     + EA V   R   + TG   LQ   + 
Sbjct: 381 VTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVR---ESTGASTLQAFLVA 436

Length = 705

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 48.2 bits (114), Expect = 4e-07
 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 25/150 (16%)

Query: 6   VKVVDSDNRMVPY-GQQGELL-IRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
           ++V D + R VP  G+    + ++G      Y+GNEE T+  L  D + RTGD  V  ++
Sbjct: 343 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 402

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           G+  +  R+KDLI  GGE I   ++E+ L  HP + EA                      
Sbjct: 403 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEA---------------------- 440

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTED 153
             V  I   +  E   A +         E+
Sbjct: 441 -AVVAIPHPKWQERPLAVVVPRGEKPTPEE 469

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 11/106 (10%)

Query: 6   VKVVD-------SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQF 58
           VK+VD       S+++  PY  +GE+ +RG      Y+ +E +T+E++ ED WL TGD  
Sbjct: 439 VKLVDVPEMNYTSEDQ--PY-PRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIG 495

Query: 59  VLTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
           +    G   ++ R K++  +  GE I P +IE+       + + +V
Sbjct: 496 LWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFV 541

Length = 651

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRG-YCNMLR-YWGNEEKTKEI-LGEDNWLR-TGDQFVLT 61
             +VD +   V  G +G L+I+  +  MLR  +G+ E+  +    +      TGD     
Sbjct: 415 PAIVDEEGNEVEGGVEGYLVIKRPWPGMLRTIYGDHERYVKTYFSKFPGYYFTGDGARRD 474

Query: 62  KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
           +DG+  ++GR+ D+I   G  +  +E+E  L +HP + EA V
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAV 516

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 37  GNEEKTKEILGE--DNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTT 94
            +E   +EI+ +  D  + T D    ++ G    +GR+ D+I   G N+YP E+ED +  
Sbjct: 276 SDENAPEEIVVKMGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLR 335

Query: 95  HPDILEAYVSEYRLKLDFTG 114
            P + EA V  YR K    G
Sbjct: 336 LPGVQEAVV--YRGKDPVAG 353

Length = 414

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 6   VKVVDSDNRMVPYGQQGELLIR-GYCN---MLRYWGNEEKTKEILGEDNWLRTGDQFVLT 61
           V ++D + + +P   +GE+ +  G      ML Y G+ EKT        + RTGD+    
Sbjct: 262 VVLLDDEGKEIPV-TEGEIALDLGDRPIGLMLGYMGDPEKTAAAFR-GGYYRTGDKAYRD 319

Query: 62  KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
           +DG+   VGR  D+       I P E+E  L  HP + EA V
Sbjct: 320 EDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAV 361

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 17/107 (15%)

Query: 10  DSDNRM--VPYGQQGELLIRGYCNMLRYWG--NEEKT-KEIL------GEDNWLRTGDQF 58
           D+D R   V  G+ G L+ R   +   + G  + E + K+IL      G D W  TGD  
Sbjct: 390 DADGRCIKVKPGEVGLLIGR-ITDRGPFDGYTDPEASEKKILRDVFKKG-DAWFNTGD-- 445

Query: 59  VLTKDGFG--SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
           ++  DGFG    V R+ D     GEN+  +E+E+ L+  P + EA V
Sbjct: 446 LMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVV 492

Length = 600

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 10  DSDNRMVPYGQQGELLIRGYCNMLRYWGNEE---KTKEILGEDNWLRTGDQFVLTKDGFG 66
             D+  +P G+ GE+++ G      Y+   E     K   G   W R GD       G  
Sbjct: 287 WDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRL 346

Query: 67  SVVGRIKDLIIRGGENIYPSEIEDFLTTHPDI 98
              GR    +   G  ++   +E     HP +
Sbjct: 347 WFCGRKAHRVETAGGTLFTVPVEQVFNRHPGV 378

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 8   VVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL---------RTGDQ 57
           V+D D   +VP G  GEL I G      Y    E T E    D +          RTGD 
Sbjct: 271 VLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDL 330

Query: 58  FVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDI 98
               +DG    +GR  D +   G+ I   EIE  L   P +
Sbjct: 331 VRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGV 371

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 38/164 (23%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEI------------LGEDN-WL 52
           V V+  D      G++GEL+ RG    + YW + EKT E             L E   W 
Sbjct: 341 VLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW- 399

Query: 53  RTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDF 112
            +GD     ++GF   VGR  ++I   G  + P+E+E+                      
Sbjct: 400 -SGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYA------------------ 440

Query: 113 TGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
           TGL+ +        +G+ D  +G+ I   +       L    L 
Sbjct: 441 TGLVAEAV-----AFGVPDPTLGQAIVLVVTPPGGEELDRAALL 479

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 14  RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD 56
           ++VP G + E+ ++G      YW + E T E   E+ + R GD
Sbjct: 359 KLVPNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 39/161 (24%)

Query: 8   VVDSDNRMVPY-GQQGELLIRG-YCNMLR-YWGNEEKTKEILGEDNWLR------TGDQF 58
           VVD +   V   G+ G L+I+  +  MLR  +G+ E+  +      +        TGD  
Sbjct: 428 VVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTY----FSPFPGYYFTGDGA 483

Query: 59  VLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQ 118
              KDG+  + GR+ D+I   G  +  +EIE  L +HP + EA                 
Sbjct: 484 RRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEA----------------- 526

Query: 119 CSIPGYCVYGIRDERMGEEIGASIRLTENSSLTED---ELR 156
                  V GI D+  G+ I A + L +     ++   ELR
Sbjct: 527 ------AVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELR 561

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL--------RTGDQ 57
             V+D+  + VP G  GEL I G      Y G  E T E    + +         RTGD 
Sbjct: 279 AYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDL 338

Query: 58  FVLTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
                DG    +GRI D + +RG   I   EIE  L + P + EA V
Sbjct: 339 VRRRADGQLEYLGRIDDQVKVRG-FRIELGEIEAALRSIPGVAEAVV 384

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 44/127 (34%), Positives = 53/127 (41%), Gaps = 16/127 (12%)

Query: 8    VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNW-------LRTGDQFVL 60
            ++D+D  +VP G  GEL + G      Y      T E    D +        RTGD   L
Sbjct: 2519 ILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRL 2578

Query: 61   TKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQC 119
              DG    VGRI   + IRG   I   EIE  L  HP + EA V    L LD     Q  
Sbjct: 2579 RADGLVEYVGRIDHQVKIRGFR-IELGEIESRLLEHPAVREAVV----LALDTPSGKQ-- 2631

Query: 120  SIPGYCV 126
             + GY V
Sbjct: 2632 -LAGYLV 2637

Length = 4334

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 14  RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD--QFV 59
           ++ P G + E+ ++G      Y  + E T     E+ + R GD  +FV
Sbjct: 416 KLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFV 463

Length = 624

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 21/106 (19%)

Query: 6   VKVVD--------SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN----WLR 53
           VK+V         SD  M     +GE++I G    L Y+ N+EKT E+   D     W  
Sbjct: 483 VKLVSWEEGGYLISDKPM----PRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFY 538

Query: 54  TGD--QFVLTKDGFGSVVGRIKDLI-IRGGENIYPSEIEDFLTTHP 96
           TGD  QF    DG   ++ R KD++ ++ GE +   ++E  L+  P
Sbjct: 539 TGDIGQF--HPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSP 582

Length = 696

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 7   KVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL---RTGDQFVLTKD 63
            ++D +   +P G+QGE++I G      Y  N EKT E     +      TGD   L +D
Sbjct: 330 LIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-ED 388

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEY 106
           G     GRI   I   G  I   EIE  L     +  A V  Y
Sbjct: 389 GLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPY 431

Length = 503

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 17  PYGQ--QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKD 74
           P G+  +GE+ +RG C    Y+ N E T+E++ +D W  TGD   +  +G   ++ R K+
Sbjct: 459 PLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLKIIDRKKN 517

Query: 75  LI-IRGGENIYPSEIEDFLTTHPDILEAYV 103
           LI +  GE +    +E+    +P + + +V
Sbjct: 518 LIKLSQGEYVALEYLENVYGQNPIVEDIWV 547

Length = 660

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 8   VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKE-------ILGEDNWLRTGDQFVL 60
           ++D++   VP G  GEL + G      Y G    T E       + GE  + RTGD    
Sbjct: 838 ILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMY-RTGDLARY 896

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
             DG     GRI   +   G  I   EIE  L  HP + EA V
Sbjct: 897 RADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAV 939

Length = 5163

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 41/144 (28%), Positives = 51/144 (35%), Gaps = 28/144 (19%)

Query: 22   GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE 81
            G L +RG   ML Y   E         D W  TGD   + ++GF ++ GR K      GE
Sbjct: 982  GRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGE 1041

Query: 82   NIYPSEIEDFLTT-HPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGA 140
             I  + +E+      PD L A V                SIP        D R GE I  
Sbjct: 1042 MISLAAVEELAAELWPDALHAAV----------------SIP--------DARKGERI-- 1075

Query: 141  SIRLTENSSLTEDELRGYFKGKAI 164
             I LT  S  T      + K    
Sbjct: 1076 -ILLTTASDATRAAFLAHAKAAGA 1098

Length = 1140

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 24/103 (23%)

Query: 54  TGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFT 113
           +GD     KDG+  + GR+ D+I   G  I  +E+E  L +HP   EA            
Sbjct: 517 SGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEA------------ 564

Query: 114 GLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR 156
                       V GI  E  G+ I A + L E    +E ELR
Sbjct: 565 -----------AVVGIEHEVKGQGIYAFVTLVEGVPYSE-ELR 595

Length = 666

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 41/143 (28%), Positives = 49/143 (34%), Gaps = 14/143 (9%)

Query: 8    VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL-------RTGDQFVL 60
            V+D     VP G  GEL I G      Y      T E    D +        RTGD    
Sbjct: 3422 VLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARY 3481

Query: 61   TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
              DG    +GRI   +   G  I   EIE  L  HP + EA V    L  D  G  Q   
Sbjct: 3482 RADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVV----LARDGAGGKQ--- 3534

Query: 121  IPGYCVYGIRDERMGEEIGASIR 143
            +  Y V         E +   + 
Sbjct: 3535 LVAYVVPADPQGDWRETLRDHLA 3557

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 8    VVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNW------LRTGDQFVLT 61
            ++D     VP G  GEL + G      Y      T E    D +       RTGD     
Sbjct: 3376 ILDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYR 3435

Query: 62   KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
             DG    +GR+   +   G  I   EIE  L  HP + EA V
Sbjct: 3436 ADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVV 3477

Length = 5163

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 16  VPYGQQGELLIRGYCNMLRYWGNEEKTKEI-LGEDNWLRTGDQFVLTKDGFGSVVGRIKD 74
           V  G+ G +L RG      Y G +     + LG + W  TGD   + + G   + GR+  
Sbjct: 375 VSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSR 434

Query: 75  LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
            +  G E +    +E  L        A         D  G L  C +PG
Sbjct: 435 FVKIGAEMVSLEALESILMEGFGQNAA---------DHAGPLVVCGLPG 474

Length = 539

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWL---RTGDQFVLTK 62
           + ++D +   +P G++GE++I G      Y  N EKT E           RTGD   +T 
Sbjct: 327 LFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT- 385

Query: 63  DGFGSVVGRIKDLIIRGGENIYPSEIED 90
           DG     GR+ D  I+   + Y  E+ED
Sbjct: 386 DGQLFYQGRL-DFQIK--LHGYRIELED 410

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG1176|consensus	537		100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.97
PLN02574	560	4-coumarate--CoA ligase-like	99.96
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.96
KOG1177|consensus	596		99.96
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.96
PLN02654	666	acetate-CoA ligase	99.96
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK00174	637	acetyl-CoA synthetase; Provisional	99.95
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.95
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.95
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.95
PLN03051	499	acyl-activating enzyme; Provisional	99.95
PRK09274	552	peptide synthase; Provisional	99.95
PRK05852	534	acyl-CoA synthetase; Validated	99.95
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.95
PRK06839	496	acyl-CoA synthetase; Validated	99.95
PRK07529	632	AMP-binding domain protein; Validated	99.95
PRK09088	488	acyl-CoA synthetase; Validated	99.95
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.95
PRK07788	549	acyl-CoA synthetase; Validated	99.94
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.94
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.94
PLN02614	666	long-chain acyl-CoA synthetase	99.94
PLN02246	537	4-coumarate--CoA ligase	99.94
PLN02330	546	4-coumarate--CoA ligase-like 1	99.94
PRK06164	540	acyl-CoA synthetase; Validated	99.94
PRK04319	570	acetyl-CoA synthetase; Provisional	99.94
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.94
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.94
PLN02860	563	o-succinylbenzoate-CoA ligase	99.94
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.94
PRK06145	497	acyl-CoA synthetase; Validated	99.94
PRK06060	705	acyl-CoA synthetase; Validated	99.94
PRK07514	504	malonyl-CoA synthase; Validated	99.94
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.94
PRK07470	528	acyl-CoA synthetase; Validated	99.94
PRK06178	567	acyl-CoA synthetase; Validated	99.94
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.94
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.94
PRK13382	537	acyl-CoA synthetase; Provisional	99.94
PRK07638	487	acyl-CoA synthetase; Validated	99.93
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.93
PRK08315	559	AMP-binding domain protein; Validated	99.93
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.93
PRK13390	501	acyl-CoA synthetase; Provisional	99.93
PLN02736	651	long-chain acyl-CoA synthetase	99.93
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.93
PRK12583	558	acyl-CoA synthetase; Provisional	99.93
PRK07787	471	acyl-CoA synthetase; Validated	99.93
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.93
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.93
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.93
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.93
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.93
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.93
PRK08316	523	acyl-CoA synthetase; Validated	99.93
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.93
PRK06188	524	acyl-CoA synthetase; Validated	99.93
KOG1175|consensus	626		99.92
PTZ00342	746	acyl-CoA synthetase; Provisional	99.92
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.92
PRK09192	579	acyl-CoA synthetase; Validated	99.92
PRK12316	5163	peptide synthase; Provisional	99.92
PLN03102	579	acyl-activating enzyme; Provisional	99.92
PRK07867	529	acyl-CoA synthetase; Validated	99.92
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.92
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.92
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.92
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.92
PRK12467	3956	peptide synthase; Provisional	99.92
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.92
PRK12316	5163	peptide synthase; Provisional	99.92
PRK05857	540	acyl-CoA synthetase; Validated	99.92
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.92
PRK13388	540	acyl-CoA synthetase; Provisional	99.92
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.92
PTZ00216	700	acyl-CoA synthetase; Provisional	99.92
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.92
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.92
PRK13383	516	acyl-CoA synthetase; Provisional	99.92
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.91
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.91
PRK05850	578	acyl-CoA synthetase; Validated	99.91
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.91
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.91
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.91
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.91
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.91
PRK13391	511	acyl-CoA synthetase; Provisional	99.91
PLN02479	567	acetate-CoA ligase	99.91
PRK08162	545	acyl-CoA synthetase; Validated	99.91
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.91
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.91
PRK12467	3956	peptide synthase; Provisional	99.9
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.9
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.9
PRK05691	4334	peptide synthase; Validated	99.9
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.9
PLN03052	728	acetate--CoA ligase; Provisional	99.9
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.9
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.9
PRK05691	4334	peptide synthase; Validated	99.89
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.89
PRK07798	533	acyl-CoA synthetase; Validated	99.89
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.89
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.89
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.89
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.88
KOG1256|consensus	691		99.88
PRK07868	994	acyl-CoA synthetase; Validated	99.88
PRK12582	624	acyl-CoA synthetase; Provisional	99.87
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.86
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.86
KOG1180|consensus	678		99.79
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.79
PRK08308	414	acyl-CoA synthetase; Validated	99.78
PRK09188	365	serine/threonine protein kinase; Provisional	99.69
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.69
KOG1179|consensus	649		99.62
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.59
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.49
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.27
PTZ00297	1452	pantothenate kinase; Provisional	99.1
KOG1178|consensus	1032		99.09
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.07
KOG3628|consensus	1363		98.7
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.11
KOG3628|consensus	1363		98.03
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	97.0
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.67
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	95.8
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	92.42
PLN02249	597	indole-3-acetic acid-amido synthetase	87.27

>KOG1176|consensus

Probab=100.00  E-value=1.4e-34  Score=253.84  Aligned_cols=141  Identities=42%  Similarity=0.582  Sum_probs=136.0

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +||..+.+.++.|+.+++++.||||++|+++|.|||+||+.|++.|.++|||+|||+|++|+||+|+|.+|++|+||.+|
T Consensus       359 ~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G  438 (537)
T KOG1176|consen  359 LPGVRVKVLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGG  438 (537)
T ss_pred             ccceEEEeeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCC
Confidence            35778888888899999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.|||++|.+||.|.||+                       |++.+|+..|+.++|||+.+++...+++++.++|+
T Consensus       439 ~qv~P~EiE~vL~~hP~V~eaa-----------------------VvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~  495 (537)
T KOG1176|consen  439 EQVSPAEIEAVLLTHPDVLEAA-----------------------VVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVR  495 (537)
T ss_pred             EEeCHHHHHHHHHhCCCccEEE-----------------------EEcccccccCCcceEEEEecCCCcCCHHHHHHHHH
Confidence            9999999999999999999999                       99999999999999999999989999999999999


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       496 k~l~  499 (537)
T KOG1176|consen  496 KKLP  499 (537)
T ss_pred             hhCC
Confidence            9986

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=2.6e-30  Score=226.65  Aligned_cols=140  Identities=45%  Similarity=0.774  Sum_probs=129.8

Q ss_pred             CCCcEEEEECCCCC-ccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDSDNR-MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~~g~-~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +||++++|+|+++. ++| |++|||+++||+++.|||++|+.|.+.|.++|||+|||+|++|++|+++|.||.+|+|+++
T Consensus       352 ~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~g  430 (534)
T COG0318         352 LPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG  430 (534)
T ss_pred             CCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeC
Confidence            58999999998864 666 9999999999999999999999999988667999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCC--CCCCHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTEN--SSLTEDELRG  157 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~--~~~~~~~l~~  157 (165)
                      |++|+|.|||++|.+||.|.+++                       |++++++..|+.++++++++++  ...+.+++.+
T Consensus       431 G~ni~p~eiE~~l~~~~~V~~aa-----------------------vvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~  487 (534)
T COG0318         431 GENIYPEEIEAVLAEHPAVAEAA-----------------------VVGVPDERWGERVVAVVVLKPGGDAELTAEELRA  487 (534)
T ss_pred             CeEECHHHHHHHHHhCCCcceEE-----------------------EEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHH
Confidence            99999999999999999999999                       9999999999999999999876  3458899999


Q ss_pred             HHHhhhc
Q psy7295         158 YFKGKAI  164 (165)
Q Consensus       158 ~l~~~l~  164 (165)
                      +|++++.
T Consensus       488 ~~~~~l~  494 (534)
T COG0318         488 FLRKRLA  494 (534)
T ss_pred             HHHhhhh
Confidence            9998664

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.96  E-value=1.2e-28  Score=215.90  Aligned_cols=141  Identities=32%  Similarity=0.503  Sum_probs=131.6

Q ss_pred             CCCcEEEEECC-CCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDS-DNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|+++++|+|+ +|++++.|+.|||+++||.++.|||++++.|.+.|..+|||+|||+++++++|++++.||.||+||++
T Consensus       380 ~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~  459 (560)
T PLN02574        380 APNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYK  459 (560)
T ss_pred             CCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEEC
Confidence            47899999994 69999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.+||+.|.+||+|.+++                       |++.+++..++.++++++.+++...+.+++.+++
T Consensus       460 G~~v~~~eiE~~l~~~~~V~~~~-----------------------v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~  516 (560)
T PLN02574        460 GFQIAPADLEAVLISHPEIIDAA-----------------------VTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYV  516 (560)
T ss_pred             CEEECHHHHHHHHHhCCCcceEE-----------------------EEccccCCCCcceEEEEEeCCCCCCCHHHHHHHH
Confidence            99999999999999999999998                       9999988888999999998776667788999999


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       517 ~~~l~  521 (560)
T PLN02574        517 AKQVA  521 (560)
T ss_pred             HHhcc
Confidence            98764

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.96  E-value=1.1e-28  Score=216.17  Aligned_cols=136  Identities=34%  Similarity=0.469  Sum_probs=125.4

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeC--cccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGY--CNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~--~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +||+++.|+|++|++++.|+ |+|+++.|  +++++||++++++.+.+.+. ||.|||.+++|+||+++|+||.||+||+
T Consensus       347 ~pG~~~~vvdd~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~v  424 (528)
T COG0365         347 LPGYAVRRVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIKV  424 (528)
T ss_pred             CCCceeEEECCCCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceEec
Confidence            68999999999999999999 99999985  99999999999999998666 9999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY  158 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  158 (165)
                      .|+||.|.|||++|.+||.|.||+                       |++.+++.+|+.+.+||+++++...+  +|.+.
T Consensus       425 sG~Rig~~EvE~~l~~hP~VaEaA-----------------------vVg~pd~~kg~~v~afVvL~~g~~~~--~L~~e  479 (528)
T COG0365         425 SGKRIGPLEIESVLLAHPAVAEAA-----------------------VVGVPDPGKGQIVLAFVVLAAGVEPN--ELAEE  479 (528)
T ss_pred             cCeeccHHHHHHHHHhCcceeeeE-----------------------EEeccCCCCCcEEEEEEEecCCCChH--HHHHH
Confidence            999999999999999999999999                       99999999999999999999887555  55555


Q ss_pred             HHhhh
Q psy7295         159 FKGKA  163 (165)
Q Consensus       159 l~~~l  163 (165)
                      ++..+
T Consensus       480 i~~~v  484 (528)
T COG0365         480 IRRHV  484 (528)
T ss_pred             HHHHH
Confidence            55543

>KOG1177|consensus

Probab=99.96  E-value=8.1e-29  Score=211.01  Aligned_cols=141  Identities=52%  Similarity=0.901  Sum_probs=134.2

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      ||+.+..|+|.+|..+|.|..|||++||++.|.|||++++.|.++...+.||+|||++.+|++|+++++||++|+|+.+|
T Consensus       412 m~h~Ea~iv~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGG  491 (596)
T KOG1177|consen  412 MDHYEAAIVDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGG  491 (596)
T ss_pred             ccccccccccCCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC--CCHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS--LTEDELRGY  158 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~--~~~~~l~~~  158 (165)
                      ++|+|.|||+.|.+||.|.++.                       |++++++..|+.+||.+.+.....  .+.++|+.+
T Consensus       492 ENVyP~ElE~fL~~hp~V~~a~-----------------------VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~  548 (596)
T KOG1177|consen  492 ENVYPTELEDFLNKHPLVKEAH-----------------------VVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAM  548 (596)
T ss_pred             cccChHHHHHHHhhCCCeeeEE-----------------------EEccCCCcccceEEEEEEeeccccccccHHHHHHH
Confidence            9999999999999999999998                       999999999999999999977654  588999999


Q ss_pred             HHhhhc
Q psy7295         159 FKGKAI  164 (165)
Q Consensus       159 l~~~l~  164 (165)
                      |+.+|+
T Consensus       549 Ck~kla  554 (596)
T KOG1177|consen  549 CKGKLA  554 (596)
T ss_pred             Hhcccc
Confidence            998864

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.96  E-value=3.2e-28  Score=217.70  Aligned_cols=141  Identities=19%  Similarity=0.281  Sum_probs=124.6

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeC---cccccccCChhhhhhhhcC-CCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGY---CNMLRYWGNEEKTKEILGE-DNWLRTGDQFVLTKDGFGSVVGRIKDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~---~~~~gY~~~~~~t~~~~~~-~~~~~TGD~~~~~~dG~l~~~GR~dd~i   76 (165)
                      +||++++|+|++|++++.|+.|||++++|   +++.|||++++.+.+.|.. +|||+|||++++|++|+++|+||+||+|
T Consensus       439 ~~g~~~~i~d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i  518 (647)
T PTZ00237        439 SIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQI  518 (647)
T ss_pred             cCCceEEEECCCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEE
Confidence            47899999999999999999999999986   7899999999999988854 7999999999999999999999999999


Q ss_pred             EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCC---CCCCH-
Q psy7295          77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTEN---SSLTE-  152 (165)
Q Consensus        77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~---~~~~~-  152 (165)
                      |++|+||+|.|||+.|.+||.|.+++                       |++.+++..++.+++||+++++   ...+. 
T Consensus       519 ~~~G~rI~p~eIE~~l~~~p~V~eaa-----------------------vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~  575 (647)
T PTZ00237        519 KISGNKVQLNTIETSILKHPLVLECC-----------------------SIGIYDPDCYNVPIGLLVLKQDQSNQSIDLN  575 (647)
T ss_pred             EECCEEeCHHHHHHHHHhCCCceeeE-----------------------EEeeEcCCCCCEEEEEEEeccCccccCCCHH
Confidence            99999999999999999999999999                       9999999999999999998743   22343 


Q ss_pred             ---HHHHHHHHhhhc
Q psy7295         153 ---DELRGYFKGKAI  164 (165)
Q Consensus       153 ---~~l~~~l~~~l~  164 (165)
                         ++|+++++++|.
T Consensus       576 ~l~~~i~~~~~~~l~  590 (647)
T PTZ00237        576 KLKNEINNIITQDIE  590 (647)
T ss_pred             HHHHHHHHHHHhhcC
Confidence               345566666553

>PLN02654 acetate-CoA ligase

Probab=99.96  E-value=4.8e-28  Score=217.18  Aligned_cols=141  Identities=25%  Similarity=0.306  Sum_probs=127.2

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEe--CcccccccCChhhhhhhhcC--CCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRG--YCNMLRYWGNEEKTKEILGE--DNWLRTGDQFVLTKDGFGSVVGRIKDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g--~~~~~gY~~~~~~t~~~~~~--~~~~~TGD~~~~~~dG~l~~~GR~dd~i   76 (165)
                      +||++++|+|++|++++.++.|||++++  |+++.|||++++.+...+..  +|||+|||++++|+||+++|+||.||+|
T Consensus       460 ~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I  539 (666)
T PLN02654        460 FFGVQPVIVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVI  539 (666)
T ss_pred             CCCceEEEECCCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeE
Confidence            4799999999999999999999999998  78999999999998877633  7999999999999999999999999999


Q ss_pred             EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCH---H
Q psy7295          77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTE---D  153 (165)
Q Consensus        77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---~  153 (165)
                      |++|+||+|.|||++|.+||+|.+++                       |++.+++..++.+++||+++++...+.   +
T Consensus       540 ~~~G~ri~p~EIE~~l~~~p~V~eaa-----------------------Vvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~  596 (666)
T PLN02654        540 NVSGHRIGTAEVESALVSHPQCAEAA-----------------------VVGIEHEVKGQGIYAFVTLVEGVPYSEELRK  596 (666)
T ss_pred             EeCCEEECHHHHHHHHHhCCCeeeEE-----------------------EEeeEcCCCCeEEEEEEEECCCCCCCHHHHH
Confidence            99999999999999999999999998                       999999999999999999987655443   4


Q ss_pred             HHHHHHHhhhc
Q psy7295         154 ELRGYFKGKAI  164 (165)
Q Consensus       154 ~l~~~l~~~l~  164 (165)
                      +|+++++++|.
T Consensus       597 ~l~~~~~~~L~  607 (666)
T PLN02654        597 SLILTVRNQIG  607 (666)
T ss_pred             HHHHHHHHhCC
Confidence            67777777653

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=5.8e-28  Score=214.54  Aligned_cols=140  Identities=25%  Similarity=0.391  Sum_probs=123.4

Q ss_pred             CCCcEEEEECC-CCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC-----------------CCeEeeccEEEEec
Q psy7295           1 MSLNIVKVVDS-DNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE-----------------DNWLRTGDQFVLTK   62 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~-----------------~~~~~TGD~~~~~~   62 (165)
                      +|++.++|+|+ +|++++.|+.|||+|+||+++.|||++++.|++.|.+                 ++||+|||+|+++ 
T Consensus       397 ~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-  475 (631)
T PRK07769        397 GVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-  475 (631)
T ss_pred             CCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-
Confidence            36778899995 5999999999999999999999999999999998842                 4899999999995 


Q ss_pred             CCcEEEecCCCceEEECcEEEChHHHHHHHhc-CCChHH--hHhhhhhhhccccccccccCCCceeEEeecC--------
Q psy7295          63 DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTT-HPDILE--AYVSEYRLKLDFTGLLQQCSIPGYCVYGIRD--------  131 (165)
Q Consensus        63 dG~l~~~GR~dd~i~~~G~~v~~~eIE~~l~~-~~~v~~--a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------  131 (165)
                      ||+|+|+||.||+||++|++|+|.|||+.|.+ ||.|.+  ++                       |++.++        
T Consensus       476 dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~a-----------------------v~~v~d~~~~~~~~  532 (631)
T PRK07769        476 DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVA-----------------------AFSVPANQLPQVVF  532 (631)
T ss_pred             CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEE-----------------------EEEecccccccccc
Confidence            99999999999999999999999999999986 899998  55                       778777        


Q ss_pred             -----------CCCCceEEEEEEeCCC-CCCCHHHHHHHHHhhhc
Q psy7295         132 -----------ERMGEEIGASIRLTEN-SSLTEDELRGYFKGKAI  164 (165)
Q Consensus       132 -----------~~~~~~~~a~v~~~~~-~~~~~~~l~~~l~~~l~  164 (165)
                                 +..++.+++++++.++ ...+.++|.++|+++|.
T Consensus       533 ~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~l~  577 (631)
T PRK07769        533 DDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRAAIA  577 (631)
T ss_pred             cccccccccccCCCCccEEEEEEecCccccccHHHHHHHHHHHHH
Confidence                       5578899999998765 34678899999998764

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.95  E-value=1.6e-27  Score=211.99  Aligned_cols=141  Identities=26%  Similarity=0.345  Sum_probs=127.7

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEe--CcccccccCChhhhhhhhc--CCCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRG--YCNMLRYWGNEEKTKEILG--EDNWLRTGDQFVLTKDGFGSVVGRIKDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g--~~~~~gY~~~~~~t~~~~~--~~~~~~TGD~~~~~~dG~l~~~GR~dd~i   76 (165)
                      +||++++|+|++|++++.|+.|||+|+|  |+++.|||++++.+.+.+.  .+|||+|||++++++||+++|+||.||+|
T Consensus       430 ~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~i  509 (637)
T PRK00174        430 LPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVL  509 (637)
T ss_pred             CCCceEEEECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEE
Confidence            5799999999999999999999999999  6899999999998877763  47899999999999999999999999999


Q ss_pred             EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC---HH
Q psy7295          77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT---ED  153 (165)
Q Consensus        77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---~~  153 (165)
                      |++|++|+|.|||+.|.+||+|.+++                       |++.+++..++.+++++++.++...+   .+
T Consensus       510 k~~G~~v~p~eIE~~l~~~~~V~~~~-----------------------Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~  566 (637)
T PRK00174        510 NVSGHRLGTAEIESALVAHPKVAEAA-----------------------VVGRPDDIKGQGIYAFVTLKGGEEPSDELRK  566 (637)
T ss_pred             EeCCEEECHHHHHHHHHhCCCcceEE-----------------------EEeeEcCCCCeEEEEEEEECCCCCCCHHHHH
Confidence            99999999999999999999999998                       99999998999999999988765444   46


Q ss_pred             HHHHHHHhhhc
Q psy7295         154 ELRGYFKGKAI  164 (165)
Q Consensus       154 ~l~~~l~~~l~  164 (165)
                      +|+++|+++|.
T Consensus       567 ~l~~~l~~~l~  577 (637)
T PRK00174        567 ELRNWVRKEIG  577 (637)
T ss_pred             HHHHHHHhhcC
Confidence            78888887653

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.95  E-value=1.8e-27  Score=210.95  Aligned_cols=141  Identities=28%  Similarity=0.342  Sum_probs=127.4

Q ss_pred             CCCcEEEEECCCCCccC-CCCceEEEEEe--CcccccccCChhhhhhhhc--CCCeEeeccEEEEecCCcEEEecCCCce
Q psy7295           1 MSLNIVKVVDSDNRMVP-YGQQGELLIRG--YCNMLRYWGNEEKTKEILG--EDNWLRTGDQFVLTKDGFGSVVGRIKDL   75 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~-~g~~GeL~v~g--~~~~~gY~~~~~~t~~~~~--~~~~~~TGD~~~~~~dG~l~~~GR~dd~   75 (165)
                      +||++++|+|++|++++ .|+.|||++++  |+++.|||++++.+.+.+.  .+|||+|||++++|++|+++++||+||+
T Consensus       421 ~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~  500 (625)
T TIGR02188       421 FFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDV  500 (625)
T ss_pred             cCCceEEEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCE
Confidence            47999999999999999 99999999999  6899999999998877764  3789999999999999999999999999


Q ss_pred             EEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC---H
Q psy7295          76 IIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT---E  152 (165)
Q Consensus        76 i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---~  152 (165)
                      ||++|++|+|.+||++|.+||.|.+++                       |++.+++..++.+++++++.++...+   .
T Consensus       501 i~~~G~ri~p~eIE~~l~~~p~V~e~~-----------------------vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~  557 (625)
T TIGR02188       501 INVSGHRLGTAEIESALVSHPAVAEAA-----------------------VVGIPDDIKGQAIYAFVTLKDGYEPDDELR  557 (625)
T ss_pred             EEeCCEEECHHHHHHHHHhCCCcceEE-----------------------EEeeEcCCCCeEEEEEEEeCCCCCCCHHHH
Confidence            999999999999999999999999998                       99999998999999999998765544   3


Q ss_pred             HHHHHHHHhhhc
Q psy7295         153 DELRGYFKGKAI  164 (165)
Q Consensus       153 ~~l~~~l~~~l~  164 (165)
                      ++++++|+++|.
T Consensus       558 ~~l~~~~~~~l~  569 (625)
T TIGR02188       558 KELRKHVRKEIG  569 (625)
T ss_pred             HHHHHHHHhhcC
Confidence            678888877654

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=1.6e-27  Score=208.80  Aligned_cols=141  Identities=35%  Similarity=0.660  Sum_probs=132.2

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|++++++|.|+.|||+++||.++.|||++++.|.+.|..++||+|||+++++++|++++.||.+|+||++|
T Consensus       384 ~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G  463 (562)
T PRK05677        384 VPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSG  463 (562)
T ss_pred             CCCCEEEEECCCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCC
Confidence            47899999999999999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      .+|+|.+||+.|.++|+|.+++                       |++.+++..++.+++++++.++...+.++++++++
T Consensus       464 ~~i~p~eiE~~l~~~~~v~~~~-----------------------v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~  520 (562)
T PRK05677        464 FNVYPNELEDVLAALPGVLQCA-----------------------AIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMR  520 (562)
T ss_pred             EEECHHHHHHHHHhCCCccEEE-----------------------EEeccCccCCceEEEEEEeCCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       99999888889999999887666678889999998


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       521 ~~l~  524 (562)
T PRK05677        521 ANLT  524 (562)
T ss_pred             Hhhh
Confidence            8764

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=4.6e-28  Score=203.05  Aligned_cols=137  Identities=35%  Similarity=0.560  Sum_probs=130.7

Q ss_pred             CCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcE
Q psy7295           2 SLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE   81 (165)
Q Consensus         2 pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~   81 (165)
                      |.=+++|+|.+|+++++|++|+|..+||..++|||+.|+.++..|+.+|+|+|||+.++|+||++.+.||.+|+|+.+|+
T Consensus       366 P~DEvrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGE  445 (542)
T COG1021         366 PDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGE  445 (542)
T ss_pred             CcceeEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccc
Confidence            55689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q psy7295          82 NIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG  161 (165)
Q Consensus        82 ~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  161 (165)
                      +|..+|||+.|..||.|.+|+                       +++.+++..|+..|+||++++. ..+..+++.++++
T Consensus       446 KIAAeEvEn~LL~HP~V~~AA-----------------------lVampDelLGEksCAfiv~~~~-~~~~~qlr~~L~~  501 (542)
T COG1021         446 KIAAEEVENLLLRHPAVHDAA-----------------------LVAMPDELLGEKSCAFIVVKEP-PLRAAQLRRFLRE  501 (542)
T ss_pred             hhhHHHHHHHHhhCchhhhhh-----------------------hhcCchhhcCcceeEEEEecCC-CCCHHHHHHHHHH
Confidence            999999999999999999999                       9999999999999999998764 4788999999986


Q ss_pred             h
Q psy7295         162 K  162 (165)
Q Consensus       162 ~  162 (165)
                      +
T Consensus       502 ~  502 (542)
T COG1021         502 R  502 (542)
T ss_pred             c
Confidence            4

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.95  E-value=2.3e-27  Score=205.52  Aligned_cols=139  Identities=19%  Similarity=0.144  Sum_probs=116.7

Q ss_pred             CCCcEEEEECCCCCccCCC--CceEEEEEeCcc--cccccCChhhhhhhhcC--------CCeEeeccEEEEecCCcEEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYG--QQGELLIRGYCN--MLRYWGNEEKTKEILGE--------DNWLRTGDQFVLTKDGFGSV   68 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g--~~GeL~v~g~~~--~~gY~~~~~~t~~~~~~--------~~~~~TGD~~~~~~dG~l~~   68 (165)
                      +||++++|+|++|++++.|  +.|||+++||.+  +.|||+++ .++..+..        .+||+|||+|++|+||+|+|
T Consensus       297 ~~~~~~~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~  375 (499)
T PLN03051        297 SLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCV  375 (499)
T ss_pred             CCCceEEEECCCCCCCCCCCCcceEEEEecCcCCCCccccCCc-ccceeeecCCccccCCcceeecCCeEEECCCCcEEE
Confidence            4789999999999999998  479999999976  57999865 33332211        13799999999999999999


Q ss_pred             ecCCCceEEECcEEEChHHHHHHHhc-CCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCC-ceEEEEE---E
Q psy7295          69 VGRIKDLIIRGGENIYPSEIEDFLTT-HPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMG-EEIGASI---R  143 (165)
Q Consensus        69 ~GR~dd~i~~~G~~v~~~eIE~~l~~-~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~a~v---~  143 (165)
                      +||.||+||++|+||+|.|||+.|.+ ||+|.+++                       |++.+++..+ +.+++++   +
T Consensus       376 ~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aa-----------------------vvg~~d~~~g~~~~~a~v~~~v  432 (499)
T PLN03051        376 QGRADDTMNLGGIKTSSVEIERACDRAVAGIAETA-----------------------AVGVAPPDGGPELLVIFLVLGE  432 (499)
T ss_pred             EeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEE-----------------------EEEecCCCCCceEEEEEEEcce
Confidence            99999999999999999999999986 99999998                       9999998888 6899998   7


Q ss_pred             eCCCC-CCCHHHHHHHHHhhh
Q psy7295         144 LTENS-SLTEDELRGYFKGKA  163 (165)
Q Consensus       144 ~~~~~-~~~~~~l~~~l~~~l  163 (165)
                      ++++. ..+.++++++|++++
T Consensus       433 ~~~~~~~~~~~~l~~~~~~~l  453 (499)
T PLN03051        433 EKKGFDQARPEALQKKFQEAI  453 (499)
T ss_pred             ecccccccchHHHHHHHHHHH
Confidence            66554 456788888876654

>PRK09274 peptide synthase; Provisional

Probab=99.95  E-value=2.7e-27  Score=206.40  Aligned_cols=139  Identities=19%  Similarity=0.269  Sum_probs=121.3

Q ss_pred             CCCcEEEEECC---------CCCccCCCCceEEEEEeCcccccccCChhhhhhhhc--CCC--eEeeccEEEEecCCcEE
Q psy7295           1 MSLNIVKVVDS---------DNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG--EDN--WLRTGDQFVLTKDGFGS   67 (165)
Q Consensus         1 ~pg~~v~vvd~---------~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~--~~~--~~~TGD~~~~~~dG~l~   67 (165)
                      +|+++++|+|+         ++++++.|+.|||+++||.++.|||++++.|...|.  .+|  ||+|||++++|++|+|+
T Consensus       358 ~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~  437 (552)
T PRK09274        358 VDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLW  437 (552)
T ss_pred             CCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEE
Confidence            47899999985         467899999999999999999999999999987763  355  99999999999999999


Q ss_pred             EecCCCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCC
Q psy7295          68 VVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTEN  147 (165)
Q Consensus        68 ~~GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~  147 (165)
                      +.||.||+||++|.+|+|.+||+.|.+||+|.+++                       |++.+++ .++.++++|++.++
T Consensus       438 ~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~-----------------------v~~~~~~-~~~~~~~~v~~~~~  493 (552)
T PRK09274        438 FCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSA-----------------------LVGVGVP-GAQRPVLCVELEPG  493 (552)
T ss_pred             EEeccCCeEEECCEEECcHHHHHHHHhCcccceeE-----------------------EEEeCCC-CCceEEEEEEccCc
Confidence            99999999999999999999999999999999998                       8888775 35678889888776


Q ss_pred             CCCCHHHHHHHHHhhh
Q psy7295         148 SSLTEDELRGYFKGKA  163 (165)
Q Consensus       148 ~~~~~~~l~~~l~~~l  163 (165)
                      ...+.+++.+.|++.+
T Consensus       494 ~~~~~~~l~~~l~~~l  509 (552)
T PRK09274        494 VACSKSALYQELRALA  509 (552)
T ss_pred             cccchHHHhhhhHHHH
Confidence            6666666777776654

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.95  E-value=4.9e-27  Score=204.23  Aligned_cols=140  Identities=36%  Similarity=0.591  Sum_probs=130.0

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +||++++++|++|++++.|+.|||+++|+.++.|||++++.|.+.| .++||+|||++++|+||++++.||.+|+||++|
T Consensus       360 ~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G  438 (534)
T PRK05852        360 STGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGG  438 (534)
T ss_pred             CCCCeEEEECCCCCCCCCCCceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEecchhhEEECC
Confidence            3789999999999999999999999999999999999999999888 578999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      .+|+|.+||+.|.++|+|.+++                       |++.+++..++.++++++.++....+.+++.++|+
T Consensus       439 ~~v~~~~iE~~l~~~~~V~~~~-----------------------v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~~~~  495 (534)
T PRK05852        439 EKISPERVEGVLASHPNVMEAA-----------------------VFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCR  495 (534)
T ss_pred             EEECHHHHHHHHHhCCCeeeEE-----------------------EEecCCcCcCceEEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       99999888889999999987665578889999998


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       496 ~~l~  499 (534)
T PRK05852        496 ERLA  499 (534)
T ss_pred             Hhcc
Confidence            8763

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.95  E-value=5e-27  Score=210.08  Aligned_cols=140  Identities=19%  Similarity=0.277  Sum_probs=122.9

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeC--cccccccCChhhhh--hh-hc-CCCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGY--CNMLRYWGNEEKTK--EI-LG-EDNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~--~~~~gY~~~~~~t~--~~-~~-~~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      +||++++|+|++|+++ .|+.|||+++||  +++.|||++++.++  +. |. -+|||+|||++++|+||+++|+||.||
T Consensus       445 ~~g~~v~ivd~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd  523 (652)
T TIGR01217       445 GLGTAVQSWDPEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDS  523 (652)
T ss_pred             cCCCceEEECCCCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccC
Confidence            3789999999999998 599999999996  68999999998654  22 32 268999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCH--
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTE--  152 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~--  152 (165)
                      +||++|+||+|.|||++|.+||+|.+++                       |++.+++..++.+++||+++++...+.  
T Consensus       524 ~I~~~G~ri~p~EIE~~l~~~p~V~eaa-----------------------vvg~~~~~~ge~~~afVv~~~~~~~~~~~  580 (652)
T TIGR01217       524 TLNPQGVRMGSAEIYNAVERLDEVRESL-----------------------CIGQEQPDGGYRVVLFVHLAPGATLDDAL  580 (652)
T ss_pred             eEecCCEEcCHHHHHHHHHhCCCcceEE-----------------------EEeeecCCCCEEEEEEEEECCCCCCCHHH
Confidence            9999999999999999999999999999                       999999999999999999987655543  


Q ss_pred             -HHHHHHHHhhhc
Q psy7295         153 -DELRGYFKGKAI  164 (165)
Q Consensus       153 -~~l~~~l~~~l~  164 (165)
                       ++++++|+++|.
T Consensus       581 ~~~l~~~~~~~l~  593 (652)
T TIGR01217       581 LDRIKRTIRAGLS  593 (652)
T ss_pred             HHHHHHHHHhhCC
Confidence             578888887764

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.95  E-value=9.3e-27  Score=199.47  Aligned_cols=140  Identities=36%  Similarity=0.544  Sum_probs=131.0

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|++++.++.|+.|||+|+|+.++.|||++++.+...+ .+|||+|||+++++++|++++.||.||+||++|
T Consensus       323 ~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G  401 (496)
T PRK06839        323 VLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGG  401 (496)
T ss_pred             CCCceEEEECCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEECC
Confidence            4789999999999999999999999999999999999999988877 589999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      .+|+|.+||+.|.++|+|.+++                       +++.+++..++.++++++++++...+.++++++++
T Consensus       402 ~~v~p~~iE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~  458 (496)
T PRK06839        402 ENIYPLEVEQVINKLSDVYEVA-----------------------VVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCR  458 (496)
T ss_pred             EEECHHHHHHHHHhCCCeeEEE-----------------------EEeccccccCceEEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       99999988899999999998777778899999998


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       459 ~~l~  462 (496)
T PRK06839        459 LFLA  462 (496)
T ss_pred             hhCc
Confidence            8764

>PRK07529 AMP-binding domain protein; Validated

Probab=99.95  E-value=6.4e-27  Score=208.50  Aligned_cols=140  Identities=36%  Similarity=0.483  Sum_probs=126.8

Q ss_pred             CCCcEEEEE--CCCC---CccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCce
Q psy7295           1 MSLNIVKVV--DSDN---RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDL   75 (165)
Q Consensus         1 ~pg~~v~vv--d~~g---~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~   75 (165)
                      +|++.++|+  |++|   ++++.|+.|||+|+||+++.||++++ .+...|..++||+|||++++++||++++.||.||+
T Consensus       392 ~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~  470 (632)
T PRK07529        392 LPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDL  470 (632)
T ss_pred             cCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcCcEEEEcCCceEEEEecccCE
Confidence            478888885  6777   88999999999999999999999865 45566667899999999999999999999999999


Q ss_pred             EEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHH
Q psy7295          76 IIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDEL  155 (165)
Q Consensus        76 i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l  155 (165)
                      ||++|++|+|.+||+.|.+||+|.+++                       |++.+++..++.++++|++.++...+.+++
T Consensus       471 i~~~G~~i~p~eIE~~l~~~p~V~~a~-----------------------vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l  527 (632)
T PRK07529        471 IIRGGHNIDPAAIEEALLRHPAVALAA-----------------------AVGRPDAHAGELPVAYVQLKPGASATEAEL  527 (632)
T ss_pred             EEeCCEEECHHHHHHHHHhCCCeeEEE-----------------------EEeccCCCCCceeEEEEEEcCCCCCCHHHH
Confidence            999999999999999999999999998                       999999989999999999988877888999


Q ss_pred             HHHHHhhhc
Q psy7295         156 RGYFKGKAI  164 (165)
Q Consensus       156 ~~~l~~~l~  164 (165)
                      ++++++++.
T Consensus       528 ~~~~~~~l~  536 (632)
T PRK07529        528 LAFARDHIA  536 (632)
T ss_pred             HHHHHHhcc
Confidence            999988763

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.95  E-value=1.2e-26  Score=199.21  Aligned_cols=141  Identities=36%  Similarity=0.551  Sum_probs=130.1

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|++|++++.|+.|||+++||+++.||+++++.+++.|..++||+|||+++++++|++++.||.||+||++|
T Consensus       312 ~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G  391 (488)
T PRK09088        312 TPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGG  391 (488)
T ss_pred             CCCcEEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCC
Confidence            47899999999999999999999999999999999999999998887889999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      .+|+|.+||+.|+++|.|.+++                       +++.+++..++..++++++.++...+..++.++|+
T Consensus       392 ~~i~~~~iE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~  448 (488)
T PRK09088        392 ENVYPAEIEAVLADHPGIRECA-----------------------VVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLS  448 (488)
T ss_pred             EEECHHHHHHHHHhCCCcceEE-----------------------EEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       99988877788888999887665567788999998


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      +++.
T Consensus       449 ~~l~  452 (488)
T PRK09088        449 TRLA  452 (488)
T ss_pred             hhCc
Confidence            8763

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.95  E-value=5.7e-27  Score=207.67  Aligned_cols=141  Identities=28%  Similarity=0.466  Sum_probs=121.6

Q ss_pred             CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcC------------------CCeEeeccEEEEe
Q psy7295           1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE------------------DNWLRTGDQFVLT   61 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~------------------~~~~~TGD~~~~~   61 (165)
                      +||++++|+|++ |+++|.|+.|||+++||.++.|||++++.|++.|.+                  ++||+|||+|+++
T Consensus       408 ~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~  487 (612)
T PRK12476        408 ARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL  487 (612)
T ss_pred             CCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE
Confidence            478999999988 999999999999999999999999999999998841                  3599999999985


Q ss_pred             cCCcEEEecCCCceEEECcEEEChHHHHHHHhc-CCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEE
Q psy7295          62 KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTT-HPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGA  140 (165)
Q Consensus        62 ~dG~l~~~GR~dd~i~~~G~~v~~~eIE~~l~~-~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a  140 (165)
                       ||+|+|+||.||+||++|++|+|.|||+.|.+ ||.|.++++                     ++++.+++. ++.+++
T Consensus       488 -dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v---------------------~v~~~~~~~-~~~~~~  544 (612)
T PRK12476        488 -DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYV---------------------TAFTVPAED-NERLVI  544 (612)
T ss_pred             -CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcE---------------------EEEEecCCC-cceEEE
Confidence             99999999999999999999999999999985 899999542                     177777776 788999


Q ss_pred             EEEeCCCC-CCCHHHHHHHHHhhhc
Q psy7295         141 SIRLTENS-SLTEDELRGYFKGKAI  164 (165)
Q Consensus       141 ~v~~~~~~-~~~~~~l~~~l~~~l~  164 (165)
                      ++++.++. ..+.+++.+++++++.
T Consensus       545 ~v~~~~~~~~~~~~~l~~~~~~~l~  569 (612)
T PRK12476        545 VAERAAGTSRADPAPAIDAIRAAVS  569 (612)
T ss_pred             EEEecCCcccccHHHHHHHHHHHHH
Confidence            99887653 3566777777777653

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.94  E-value=1e-26  Score=202.90  Aligned_cols=137  Identities=32%  Similarity=0.565  Sum_probs=126.6

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|++|++++.|+.|||+++|+.++.||++++..  . + .+|||+|||+++++++|+++|.||.||+||++|
T Consensus       382 ~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G  457 (549)
T PRK07788        382 PKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGG  457 (549)
T ss_pred             CCCcEEEEECCCcCCCCCCCeEEEEEeCCCccccccCCCcc--c-c-cCCceecCceEEEcCCCCEEEeccCcceEEECC
Confidence            47899999999999999999999999999999999998765  2 2 478999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.++|+|.+++                       |++.+++..++.++++|+++++...+.++++++++
T Consensus       458 ~~v~p~eIE~~l~~~~~V~~~~-----------------------v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~  514 (549)
T PRK07788        458 ENVFPAEVEDLLAGHPDVVEAA-----------------------VIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVR  514 (549)
T ss_pred             EEECHHHHHHHHHhCCCeeEEE-----------------------EECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       99999988899999999988777788899999999


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       515 ~~l~  518 (549)
T PRK07788        515 DNLA  518 (549)
T ss_pred             Hhhh
Confidence            8774

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.94  E-value=1e-26  Score=206.82  Aligned_cols=141  Identities=22%  Similarity=0.282  Sum_probs=124.5

Q ss_pred             CCCcEEEEECC-CCCccCCCCceEEEEEeC---cccccccCChhhhhhhh---cCCCeEeeccEEEEecCCcEEEecCCC
Q psy7295           1 MSLNIVKVVDS-DNRMVPYGQQGELLIRGY---CNMLRYWGNEEKTKEIL---GEDNWLRTGDQFVLTKDGFGSVVGRIK   73 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~g~~GeL~v~g~---~~~~gY~~~~~~t~~~~---~~~~~~~TGD~~~~~~dG~l~~~GR~d   73 (165)
                      +||++++|+|+ +|++++.|+.|||+++||   +++.+||++++.+.+.+   ..++||+|||++++|+||+++|+||.|
T Consensus       416 ~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~d  495 (628)
T TIGR02316       416 MYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTD  495 (628)
T ss_pred             cCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCc
Confidence            47999999998 699999999999999998   57899999998887665   246899999999999999999999999


Q ss_pred             ceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCC---
Q psy7295          74 DLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSL---  150 (165)
Q Consensus        74 d~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~---  150 (165)
                      |+||++|+||+|.|||+.|.+||+|.+++                       |++.+++..++.+++|++++++...   
T Consensus       496 d~ik~~G~rv~~~eIE~~l~~~p~V~ea~-----------------------Vvg~~d~~~g~~~~~~vv~~~~~~~~~~  552 (628)
T TIGR02316       496 DVINVAGHRLGTREIEESVSSHPSVAEVA-----------------------VVGVHDELKGQVAVVFAILKESDSAGDA  552 (628)
T ss_pred             ceEEeCCEEeCHHHHHHHHHhCCCcceEE-----------------------EEeeecCCCCeEEEEEEEEcCCcccccc
Confidence            99999999999999999999999999998                       9999999999999999998764321   


Q ss_pred             -----CHHHHHHHHHhhhc
Q psy7295         151 -----TEDELRGYFKGKAI  164 (165)
Q Consensus       151 -----~~~~l~~~l~~~l~  164 (165)
                           ..++|+++++++|.
T Consensus       553 ~~~~~~~~~i~~~~~~~L~  571 (628)
T TIGR02316       553 HDPHAVETGMMDCVVRQLG  571 (628)
T ss_pred             cchHHHHHHHHHHHHHhcC
Confidence                 24678888877763

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.94  E-value=1.5e-26  Score=199.89  Aligned_cols=141  Identities=33%  Similarity=0.520  Sum_probs=131.7

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEe---CcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRG---YCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLII   77 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g---~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~   77 (165)
                      +|+++++|+|++|++++.|+.|||+++|   +.++.|||++++.+.+.|..++||+|||+++++++|+++++||.||+||
T Consensus       346 ~~g~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~  425 (517)
T PRK08008        346 GFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIK  425 (517)
T ss_pred             CCCcEEEEECCCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEE
Confidence            4789999999999999999999999997   6899999999999999998899999999999999999999999999999


Q ss_pred             ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy7295          78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRG  157 (165)
Q Consensus        78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~  157 (165)
                      ++|.+|+|.+||+.|.+++.|.+++                       |++.+++..++.+.++++++++...+.+++.+
T Consensus       426 ~~G~~i~p~~iE~~l~~~~~v~~~~-----------------------v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  482 (517)
T PRK08008        426 RGGENVSCVELENIIATHPKIQDIV-----------------------VVGIKDSIRDEAIKAFVVLNEGETLSEEEFFA  482 (517)
T ss_pred             eCCEEECHHHHHHHHHhCCceeeEE-----------------------EEccCCCCCCceEEEEEEECCCCCCCHHHHHH
Confidence            9999999999999999999999998                       99999888888999999998776777889999


Q ss_pred             HHHhhhc
Q psy7295         158 YFKGKAI  164 (165)
Q Consensus       158 ~l~~~l~  164 (165)
                      ++++++.
T Consensus       483 ~~~~~l~  489 (517)
T PRK08008        483 FCEQNMA  489 (517)
T ss_pred             HHHhhcc
Confidence            9988753

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.94  E-value=6.3e-27  Score=210.17  Aligned_cols=118  Identities=24%  Similarity=0.327  Sum_probs=106.8

Q ss_pred             CCCcEEEEEC-CC--CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295           1 MSLNIVKVVD-SD--NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLII   77 (165)
Q Consensus         1 ~pg~~v~vvd-~~--g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~   77 (165)
                      +||++++|+| ++  +++++.|+.|||+|+||+++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||.||+||
T Consensus       445 ~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik  523 (666)
T PLN02614        445 VPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVGEWQPNGSMKIIDRKKNIFK  523 (666)
T ss_pred             CCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcccceEEEEcCCCCEEEEEcchhcee
Confidence            5899999998 33  4789999999999999999999999999999999 589999999999999999999999999999


Q ss_pred             E-CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeC
Q psy7295          78 R-GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLT  145 (165)
Q Consensus        78 ~-~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~  145 (165)
                      + +|++|+|.+||+.|.+||.|.+++                       |++...   ...++|+|+++
T Consensus       524 ~~~G~~V~p~eIE~~l~~~p~V~~~~-----------------------V~g~~~---~~~l~alvv~~  566 (666)
T PLN02614        524 LSQGEYVAVENIENIYGEVQAVDSVW-----------------------VYGNSF---ESFLVAIANPN  566 (666)
T ss_pred             cCCCeeecHHHHHHHHhcCCCeeEEE-----------------------EEecCC---cceEEEEEeCC
Confidence            5 799999999999999999999998                       888652   23688888864

>PLN02246 4-coumarate--CoA ligase

Probab=99.94  E-value=2.3e-26  Score=200.09  Aligned_cols=141  Identities=33%  Similarity=0.488  Sum_probs=130.5

Q ss_pred             CCCcEEEEECC-CCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDS-DNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|+++++|+|+ .+++++.|+.|||+++|+.++.|||+++..+.+.|..++||+|||+++++++|.+++.||.||+||++
T Consensus       362 ~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~  441 (537)
T PLN02246        362 VRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYK  441 (537)
T ss_pred             cCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEEC
Confidence            47899999996 58999999999999999999999999999999988788999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.+||+.|.++|+|.+++                       |++.++...++.++++++..++...+.++++++|
T Consensus       442 G~~i~~~eIE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l  498 (537)
T PLN02246        442 GFQVAPAELEALLISHPSIADAA-----------------------VVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFV  498 (537)
T ss_pred             CEEECcHHHHHHHHhCCCeeEEE-----------------------EEcccCccCCceeEEEEEeCCCCCCCHHHHHHHH
Confidence            99999999999999999999998                       8888888888999999998776667788999999


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       499 ~~~l~  503 (537)
T PLN02246        499 AKQVV  503 (537)
T ss_pred             HhhCc
Confidence            88763

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.94  E-value=1.5e-26  Score=201.77  Aligned_cols=141  Identities=33%  Similarity=0.529  Sum_probs=130.5

Q ss_pred             CCCcEEEEECC-CCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDS-DNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +||++++|+|+ +++++|.|+.|||+++|+.++.||++++..+.+.+..++||+|||++++++||+++++||.+|++|++
T Consensus       367 ~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~  446 (546)
T PLN02330        367 LPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYK  446 (546)
T ss_pred             cCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcC
Confidence            57899999995 58999999999999999999999999999999888888999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.+||+.|.++|.|.+++                       |++.+++..++.+++++++.++...+.+++++++
T Consensus       447 G~~v~~~~iE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~  503 (546)
T PLN02330        447 GFQVAPAELEAILLTHPSVEDAA-----------------------VVPLPDEEAGEIPAACVVINPKAKESEEDILNFV  503 (546)
T ss_pred             CEEECHHHHHHHHHhCCchheEE-----------------------EEeccccccCceeEEEEEECCCCCCCHHHHHHHH
Confidence            99999999999999999999998                       9999888889999999998776667788899999


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       504 ~~~l~  508 (546)
T PLN02330        504 AANVA  508 (546)
T ss_pred             HHhcc
Confidence            88763

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.94  E-value=2.9e-26  Score=199.23  Aligned_cols=139  Identities=27%  Similarity=0.295  Sum_probs=126.8

Q ss_pred             CCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           2 SLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         2 pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      |++.++|+|++ +++++.|+.|||+++|++++.|||++++.|...|..++||+|||+++++++|++++.||.||+||++|
T Consensus       357 ~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G  436 (540)
T PRK06164        357 PEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGG  436 (540)
T ss_pred             CCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECC
Confidence            67899999964 89999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.++|+|.+++                       |++.+. ..++.+++++++.++...+.+++.++|+
T Consensus       437 ~~i~p~eIE~~l~~~~~v~~~~-----------------------v~~~~~-~~~~~~~~~vv~~~~~~~~~~~l~~~~~  492 (540)
T PRK06164        437 FLVNPAEIEHALEALPGVAAAQ-----------------------VVGATR-DGKTVPVAFVIPTDGASPDEAGLMAACR  492 (540)
T ss_pred             EEcCHHHHHHHHHhCCCceeEE-----------------------EEecCC-CCceeEEEEEEeCCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       888773 4557888999887766678899999998


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       493 ~~l~  496 (540)
T PRK06164        493 EALA  496 (540)
T ss_pred             hhcc
Confidence            8764

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.94  E-value=3.2e-26  Score=200.94  Aligned_cols=140  Identities=31%  Similarity=0.463  Sum_probs=127.1

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEe--CcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRG--YCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g--~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +||++++|+|++|.+++.|+.|||++++  |.++.|||++++.+.+.|. +|||+|||+++++++|+++++||.||+||+
T Consensus       382 ~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~  460 (570)
T PRK04319        382 LPGIEAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDEDGYFWFQGRVDDVIKT  460 (570)
T ss_pred             CCCCEEEEECCCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECCCeeEEEEecCCCEEEE
Confidence            4799999999999999999999999997  8999999999999998885 789999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCH---HHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTE---DEL  155 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---~~l  155 (165)
                      +|++|+|.+||+.|.+||.|.+++                       |++.+++..++.+++++++.++...+.   +++
T Consensus       461 ~G~~i~p~eIE~~l~~~~~V~~~~-----------------------v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l  517 (570)
T PRK04319        461 SGERVGPFEVESKLMEHPAVAEAG-----------------------VIGKPDPVRGEIIKAFVALRPGYEPSEELKEEI  517 (570)
T ss_pred             CCEEECHHHHHHHHhhCCCeeecc-----------------------eecccCcCCceEEEEEEEECCCCCCCHHHHHHH
Confidence            999999999999999999999998                       999999888999999999876544332   578


Q ss_pred             HHHHHhhhc
Q psy7295         156 RGYFKGKAI  164 (165)
Q Consensus       156 ~~~l~~~l~  164 (165)
                      +++|+++|.
T Consensus       518 ~~~~~~~l~  526 (570)
T PRK04319        518 RGFVKKGLG  526 (570)
T ss_pred             HHHHHHhcc
Confidence            888877653

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.94  E-value=3e-26  Score=204.51  Aligned_cols=140  Identities=23%  Similarity=0.285  Sum_probs=122.0

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeC--cccccccCChhhhh--hhhc--CCCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGY--CNMLRYWGNEEKTK--EILG--EDNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~--~~~~gY~~~~~~t~--~~~~--~~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      +||++++|+|++|+++ .|+.|||+|++|  +++.|||++++.++  ..+.  .++||+|||++++|+||+++|+||.||
T Consensus       444 ~~g~~~~ivd~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd  522 (655)
T PRK03584        444 GLGMAVEAWDEDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDA  522 (655)
T ss_pred             cCCceeEEECCCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccC
Confidence            4789999999999999 799999999995  78999999987543  2221  257999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCH--
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTE--  152 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~--  152 (165)
                      +||++|++|+|.|||++|.+||.|.+|+                       |++.+++..++.+++||+++++...+.  
T Consensus       523 ~Ik~~G~rI~p~EIE~~l~~~p~V~ea~-----------------------vvg~~~~~~g~~~~a~vv~~~~~~~~~~~  579 (655)
T PRK03584        523 TLNRGGVRIGTAEIYRQVEALPEVLDSL-----------------------VIGQEWPDGDVRMPLFVVLAEGVTLDDAL  579 (655)
T ss_pred             eeecCcEEECHHHHHHHHHhCCCcceEE-----------------------EEeeEcCCCCEEEEEEEEECCCCCCcHHH
Confidence            9999999999999999999999999998                       999999888999999999987654443  


Q ss_pred             -HHHHHHHHhhhc
Q psy7295         153 -DELRGYFKGKAI  164 (165)
Q Consensus       153 -~~l~~~l~~~l~  164 (165)
                       ++++++|+++|.
T Consensus       580 ~~~l~~~~~~~L~  592 (655)
T PRK03584        580 RARIRTTIRTNLS  592 (655)
T ss_pred             HHHHHHHHHhhCC
Confidence             578888887663

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.94  E-value=3.4e-26  Score=200.41  Aligned_cols=140  Identities=39%  Similarity=0.672  Sum_probs=128.8

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|+++.+++.|+.|||+++|+.++.|||++++.+.+.|..++||+|||+++++++|++++.||.|+++|++|
T Consensus       392 ~~~~~v~ivd~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G  471 (562)
T PRK12492        392 VPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSG  471 (562)
T ss_pred             cCCCEEEEECCCCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECC
Confidence            47899999999999999999999999999999999999999999987789999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.+||.|.+++                       +++.+++..++.+.+++++.+. ..+.++++++++
T Consensus       472 ~~i~~~eIE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~  527 (562)
T PRK12492        472 FNVYPNEIEDVVMAHPKVANCA-----------------------AIGVPDERSGEAVKLFVVARDP-GLSVEELKAYCK  527 (562)
T ss_pred             EEECHHHHHHHHHhCCCeeEEE-----------------------EEeccCCCCCceEEEEEEeCCC-CCCHHHHHHHHH
Confidence            9999999999999999999998                       8898888888899999887543 356788999988


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       528 ~~l~  531 (562)
T PRK12492        528 ENFT  531 (562)
T ss_pred             Hhcc
Confidence            8764

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.94  E-value=2.6e-26  Score=201.40  Aligned_cols=133  Identities=35%  Similarity=0.588  Sum_probs=121.0

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|++     .|+.|||+++||.++.|||++++.+.+.|..+|||+|||+++++++|+++|.||.||+||++|
T Consensus       370 ~~~~~v~i~~~~-----~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G  444 (563)
T PLN02860        370 APHVELKIGLDE-----SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGG  444 (563)
T ss_pred             cCCcEEEEecCC-----CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECC
Confidence            467888998876     588999999999999999999999999988899999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCC------------
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENS------------  148 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~------------  148 (165)
                      ++|+|.+||+.|.+||+|.+++                       |++.+++..++.++++++++++.            
T Consensus       445 ~~v~p~eIE~~l~~~p~V~~~~-----------------------v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~  501 (563)
T PLN02860        445 ENVYPEEVEAVLSQHPGVASVV-----------------------VVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKK  501 (563)
T ss_pred             EEccHHHHHHHHHhCCCcceeE-----------------------EEEEecCcCCceEEEEEEECCccccccccchhhcc
Confidence            9999999999999999999998                       99999988899999999987642            


Q ss_pred             --CCCHHHHHHHHHh
Q psy7295         149 --SLTEDELRGYFKG  161 (165)
Q Consensus       149 --~~~~~~l~~~l~~  161 (165)
                        ..+.+++++++++
T Consensus       502 ~~~~~~~~l~~~~~~  516 (563)
T PLN02860        502 NLTLSSETLRHHCRE  516 (563)
T ss_pred             cccccHHHHHHHHhh
Confidence              3456788888876

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.94  E-value=3.1e-26  Score=198.95  Aligned_cols=137  Identities=34%  Similarity=0.540  Sum_probs=127.9

Q ss_pred             CCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcE
Q psy7295           2 SLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE   81 (165)
Q Consensus         2 pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~   81 (165)
                      +++.++++|++|++++.|+.|||+++|+.++.|||++++.+.+.|..++||+|||+++++++|++++.||.||+|+++|.
T Consensus       360 ~~~~v~i~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~  439 (527)
T TIGR02275       360 PDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGE  439 (527)
T ss_pred             CCceEEEECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCE
Confidence            46789999999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             EEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q psy7295          82 NIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG  161 (165)
Q Consensus        82 ~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  161 (165)
                      +|+|.+||+.|.++|+|.+++                       |++.+++..++.++++++++++ ..+..++++++++
T Consensus       440 ~v~~~eiE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~a~vv~~~~-~~~~~~l~~~l~~  495 (527)
T TIGR02275       440 KIAAEEIENLLLAHPAVHDAA-----------------------LVSMPDELLGEKSCAFIVVRDP-ALKAAQLRRFLRE  495 (527)
T ss_pred             EECHHHHHHHHHhCCCceEEE-----------------------EEecCCcccccEEEEEEEECCC-CCCHHHHHHHHHh
Confidence            999999999999999999998                       9999998888999999988664 4678899999986


Q ss_pred             h
Q psy7295         162 K  162 (165)
Q Consensus       162 ~  162 (165)
                      +
T Consensus       496 ~  496 (527)
T TIGR02275       496 R  496 (527)
T ss_pred             C
Confidence            4

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.94  E-value=4.5e-26  Score=195.77  Aligned_cols=140  Identities=34%  Similarity=0.575  Sum_probs=130.1

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++++|+++.+++.|+.|||+++|+.++.|||+++..+...| .++||+|||+++++++|++++.||.||+||++|
T Consensus       325 ~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G  403 (497)
T PRK06145        325 LAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGG  403 (497)
T ss_pred             CCCceEEEECCCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEeCC
Confidence            4789999999999999999999999999999999999999999888 578999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++++|.+||+.|.++|+|.+++                       |++.+++..++.+++++++.+....+.+++.++|+
T Consensus       404 ~~v~~~~IE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  460 (497)
T PRK06145        404 ENIASSEVERVIYELPEVAEAA-----------------------VIGVHDDRWGERITAVVVLNPGATLTLEALDRHCR  460 (497)
T ss_pred             eEECHHHHHHHHHhCCCeeEEE-----------------------EEecCCCccCceEEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       88988888888999999987766677889999998


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       461 ~~l~  464 (497)
T PRK06145        461 QRLA  464 (497)
T ss_pred             Hhhh
Confidence            8764

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.94  E-value=3.1e-26  Score=206.06  Aligned_cols=138  Identities=22%  Similarity=0.406  Sum_probs=122.7

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|++|++++.|+.|||+|+|++++.|||++++.+.   ..++||+|||++++++||+++|+||.||+||++|
T Consensus       319 ~~~~~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G  395 (705)
T PRK06060        319 LPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGG  395 (705)
T ss_pred             CCCcEEEEECCCCCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEECC
Confidence            4789999999999999999999999999999999999998653   3579999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCH---HHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTE---DELRG  157 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---~~l~~  157 (165)
                      ++|+|.+||+.|.+||.|.+++                       |++.+++..++.+++++++..+...+.   .++++
T Consensus       396 ~~v~~~eIE~~l~~~~~V~~a~-----------------------vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~  452 (705)
T PRK06060        396 VNVDPREVERLIIEDEAVAEAA-----------------------VVAVRESTGASTLQAFLVATSGATIDGSVMRDLHR  452 (705)
T ss_pred             EEECHHHHHHHHHhCCCeeEEE-----------------------EEeecCccCCeeEEEEEEeccccCcChHHHHHHHH
Confidence            9999999999999999999998                       889888888889999999765544443   46777


Q ss_pred             HHHhhhc
Q psy7295         158 YFKGKAI  164 (165)
Q Consensus       158 ~l~~~l~  164 (165)
                      +|+++|.
T Consensus       453 ~l~~~L~  459 (705)
T PRK06060        453 GLLNRLS  459 (705)
T ss_pred             HHHHhCC
Confidence            8877663

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.94  E-value=5.9e-26  Score=195.09  Aligned_cols=141  Identities=30%  Similarity=0.508  Sum_probs=130.6

Q ss_pred             CCCcEEEEEC-CCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd-~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|+++++|+| +++++++.|+.|||+++|+.++.||+++++.+++.|..++||+|||+++++++|+++++||.||+||++
T Consensus       327 ~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~  406 (504)
T PRK07514        327 LPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISG  406 (504)
T ss_pred             CCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeC
Confidence            4789999999 669999999999999999999999999999999999878999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.+||+.+.++++|.+++                       +++.+++..++.++++++..+....+..++++++
T Consensus       407 G~~i~~~~IE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  463 (504)
T PRK07514        407 GYNVYPKEVEGEIDELPGVVESA-----------------------VIGVPHPDFGEGVTAVVVPKPGAALDEAAILAAL  463 (504)
T ss_pred             CeEECHHHHHHHHHhCCCeeEEE-----------------------EEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHH
Confidence            99999999999999999999998                       8888888888899999998776666788899999


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       464 ~~~l~  468 (504)
T PRK07514        464 KGRLA  468 (504)
T ss_pred             Hhhcc
Confidence            88763

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.94  E-value=6.6e-26  Score=198.19  Aligned_cols=140  Identities=34%  Similarity=0.477  Sum_probs=129.8

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeC---cccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGY---CNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLII   77 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~---~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~   77 (165)
                      +|++.++|+|++|++++.|+.|||+++|+   .++.||+++++.+...| .++||+|||++++++||+++++||.+|+||
T Consensus       349 ~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~  427 (542)
T PRK06155        349 APGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIR  427 (542)
T ss_pred             CCCceEEEECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEE
Confidence            47899999999999999999999999998   69999999999998887 689999999999999999999999999999


Q ss_pred             ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy7295          78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRG  157 (165)
Q Consensus        78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~  157 (165)
                      ++|.+|+|.+||+.|.++|+|.+++                       |++.+++..++.+.+++++..+...+..++++
T Consensus       428 ~~G~~v~p~eIE~~l~~~~~V~~~~-----------------------v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~  484 (542)
T PRK06155        428 RRGENISSFEVEQVLLSHPAVAAAA-----------------------VFPVPSELGEDEVMAAVVLRDGTALEPVALVR  484 (542)
T ss_pred             eCCEEECHHHHHHHHHhCCCeeEEE-----------------------EEeecccccCceEEEEEEECCCCCCCHHHHHH
Confidence            9999999999999999999999998                       88888888888899999988777788899999


Q ss_pred             HHHhhhc
Q psy7295         158 YFKGKAI  164 (165)
Q Consensus       158 ~l~~~l~  164 (165)
                      +|+++|.
T Consensus       485 ~~~~~l~  491 (542)
T PRK06155        485 HCEPRLA  491 (542)
T ss_pred             HHHhhCc
Confidence            9988764

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.94  E-value=7.2e-26  Score=196.25  Aligned_cols=140  Identities=34%  Similarity=0.555  Sum_probs=129.1

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +||+.++++|++|++++.|+.|||+++|+.++.|||++++.+...| .++||+|||+++++++|++++.||.||++|++|
T Consensus       346 ~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G  424 (528)
T PRK07470        346 RTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGG  424 (528)
T ss_pred             cCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCCccceEEeCC
Confidence            4688999999999999999999999999999999999999998877 579999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.++++|.+++                       |++.+++..++.++++++..++...+.++++++|+
T Consensus       425 ~~v~~~~IE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  481 (528)
T PRK07470        425 SNVYPREIEEKLLTHPAVSEVA-----------------------VLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLD  481 (528)
T ss_pred             EEECHHHHHHHHHhCCCceEEE-----------------------EEeccCcccCceeEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       99998888888899999887766678889999998


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      +.|.
T Consensus       482 ~~l~  485 (528)
T PRK07470        482 GKVA  485 (528)
T ss_pred             Hhhh
Confidence            8763

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.94  E-value=6.2e-26  Score=198.59  Aligned_cols=140  Identities=30%  Similarity=0.542  Sum_probs=128.5

Q ss_pred             CCCcEEEEECC-CCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDS-DNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +||++++|+|+ ++.+++.|+.|||+++||+++.|||++++.+.+.| .+|||+|||+++++++|+++++||.+|+++++
T Consensus       393 ~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~  471 (567)
T PRK06178        393 VPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVN  471 (567)
T ss_pred             cCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecCCeEEEEecccccEEEC
Confidence            57999999995 59999999999999999999999999999998877 56899999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |.+|+|.+||+.+.++++|.+++                       +++.+++..++.+++++++.++...+.+++++++
T Consensus       472 G~~i~~~eiE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~  528 (567)
T PRK06178        472 GMSVFPSEVEALLGQHPAVLGSA-----------------------VVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWC  528 (567)
T ss_pred             CEEECHHHHHHHHHhCCCeeEEE-----------------------EEcCcCcccCcceEEEEEeCCCCcCCHHHHHHHH
Confidence            99999999999999999999998                       8888888888899999998776667889999999


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      ++++.
T Consensus       529 ~~~l~  533 (567)
T PRK06178        529 RENMA  533 (567)
T ss_pred             HhcCc
Confidence            88764

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.94  E-value=9.5e-26  Score=196.85  Aligned_cols=136  Identities=37%  Similarity=0.545  Sum_probs=126.0

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|++.++|+|+++++++.|+.|||+++|+.++.||+++++.|+..  .+|||+|||+++++++|++++.||.||++|++|
T Consensus       372 ~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G  449 (547)
T PRK13295        372 LPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGG  449 (547)
T ss_pred             cCCcEEEEECCCCCCCCCCCCCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEEeccCCeEEECC
Confidence            478999999999999999999999999999999999999988765  578999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.++++|.+++                       |++.+++..++.+++++++.++...+.+++.++++
T Consensus       450 ~~v~p~~IE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~  506 (547)
T PRK13295        450 ENIPVVEIEALLYRHPAIAQVA-----------------------IVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLK  506 (547)
T ss_pred             EEECHHHHHHHHHhCCCeeeEE-----------------------EEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       99998888889999999988766667788888887


Q ss_pred             h
Q psy7295         161 G  161 (165)
Q Consensus       161 ~  161 (165)
                      +
T Consensus       507 ~  507 (547)
T PRK13295        507 A  507 (547)
T ss_pred             h
Confidence            5

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.94  E-value=3.2e-26  Score=205.27  Aligned_cols=118  Identities=22%  Similarity=0.323  Sum_probs=105.0

Q ss_pred             CCCcEEEEEC--CCC-CccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295           1 MSLNIVKVVD--SDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLII   77 (165)
Q Consensus         1 ~pg~~v~vvd--~~g-~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~   77 (165)
                      +|+++++|+|  ++| ..++.+..|||+++||+++.|||++|+.|++.| .+|||+|||+|++|+||+|+|.||+||+||
T Consensus       442 ~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik  520 (660)
T PLN02861        442 MTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKIIDRKKNIFK  520 (660)
T ss_pred             cCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcccCceEEECCCCcEEEEeccccceE
Confidence            5789999998  335 344566789999999999999999999999999 589999999999999999999999999999


Q ss_pred             E-CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeC
Q psy7295          78 R-GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLT  145 (165)
Q Consensus        78 ~-~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~  145 (165)
                      + +|++|+|.+||+.|.+||.|.+++                       |++.+   .++.++|+|++.
T Consensus       521 ~~~G~~I~p~eIE~~l~~~p~V~~a~-----------------------V~G~~---~~~~~~A~vv~~  563 (660)
T PLN02861        521 LSQGEYVAVENLENTYSRCPLIASIW-----------------------VYGNS---FESFLVAVVVPD  563 (660)
T ss_pred             cCCCeEEcHHHHHHHHhcCCCeeEEE-----------------------EEecC---CcceeEEEEEcC
Confidence            6 799999999999999999999998                       88865   346788998864

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.94  E-value=9.9e-26  Score=196.71  Aligned_cols=137  Identities=34%  Similarity=0.562  Sum_probs=124.4

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +||++++|+|+++++++.|+.|||+++||.++.||+  ++.+.. + .+|||+|||+++++++|+++|.||.||+||++|
T Consensus       371 ~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G  446 (537)
T PRK13382        371 AEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGG  446 (537)
T ss_pred             CcCcEEEEECCCCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeCCCcEEEeccccceeEECC
Confidence            478999999999999999999999999999999998  444443 3 378999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.++|+|.+++                       |++.+++..++.+++++++.++...+.++++++++
T Consensus       447 ~~v~~~eIE~~l~~~~~V~~~~-----------------------v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~  503 (537)
T PRK13382        447 ENVYPIEVEKTLATHPDVAEAA-----------------------VIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVR  503 (537)
T ss_pred             EEECHHHHHHHHHhCCCEeeEE-----------------------EEccCccccCCEEEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       99999888889999999987766677889999999


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       504 ~~l~  507 (537)
T PRK13382        504 DNLA  507 (537)
T ss_pred             Hhcc
Confidence            8774

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.93  E-value=9.3e-26  Score=193.80  Aligned_cols=136  Identities=28%  Similarity=0.432  Sum_probs=123.8

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|++.++|+|++|.+++.|+.|||+++|+.++.|||+++..+.+.+ .+|||+|||++++|++|++++.||.+|+||++|
T Consensus       313 ~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G  391 (487)
T PRK07638        313 FHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGG  391 (487)
T ss_pred             cCCcEEEEECCCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeEEeCC
Confidence            4789999999999999999999999999999999999998876654 679999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      .+|+|.+||+.|.++|+|.+++                       |++.+++..++.+++++..    ..+.++++++|+
T Consensus       392 ~~v~~~eiE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~~~v~~----~~~~~~l~~~~~  444 (487)
T PRK07638        392 INIFPEEIESVLHEHPAVDEIV-----------------------VIGVPDSYWGEKPVAIIKG----SATKQQLKSFCL  444 (487)
T ss_pred             EEECHHHHHHHHHhCCCeeeEE-----------------------EEecCchhcCCeeEEEEEC----CCCHHHHHHHHH
Confidence            9999999999999999999998                       9999988888888888874    356788888888


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       445 ~~l~  448 (487)
T PRK07638        445 QRLS  448 (487)
T ss_pred             HHhh
Confidence            7653

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.93  E-value=8.3e-26  Score=196.98  Aligned_cols=136  Identities=32%  Similarity=0.542  Sum_probs=127.0

Q ss_pred             CCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcE
Q psy7295           2 SLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE   81 (165)
Q Consensus         2 pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~   81 (165)
                      |++.++|+|++|++++.|+.|||+++|+.++.|||++++.|.+.|..++||+|||++++|++|++++.||.+|++|++|.
T Consensus       361 ~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~  440 (536)
T PRK10946        361 PDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGE  440 (536)
T ss_pred             CCceEEEECCCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCE
Confidence            67899999999999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             EEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q psy7295          82 NIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG  161 (165)
Q Consensus        82 ~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  161 (165)
                      +|+|.+||+.|.++|+|.+++                       +++.+++..++.++++++++++  .+.+++++++++
T Consensus       441 ~v~~~eiE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~a~vv~~~~--~~~~~l~~~~~~  495 (536)
T PRK10946        441 KIAAEEIENLLLRHPAVIHAA-----------------------LVSMEDELMGEKSCAFLVVKEP--LKAVQLRRFLRE  495 (536)
T ss_pred             EEcHHHHHHHHHhCCCcceEE-----------------------EEcCCCcccCceEEEEEEeCCC--CCHHHHHHHHHh
Confidence            999999999999999999998                       8888888888899999987654  678889998876


Q ss_pred             h
Q psy7295         162 K  162 (165)
Q Consensus       162 ~  162 (165)
                      +
T Consensus       496 ~  496 (536)
T PRK10946        496 Q  496 (536)
T ss_pred             C
Confidence            4

>PRK08315 AMP-binding domain protein; Validated

Probab=99.93  E-value=1.2e-25  Score=195.82  Aligned_cols=141  Identities=49%  Similarity=0.867  Sum_probs=130.2

Q ss_pred             CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|++.++|+|++ |++++.|+.|||+++|+.++.|||+++..+...|..++||+|||+++++++|.++++||.|+++|++
T Consensus       377 ~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~  456 (559)
T PRK08315        377 LPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRG  456 (559)
T ss_pred             CCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEEC
Confidence            479999999998 9999999999999999999999999999998888778999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.+||+.|.++|+|.+++                       |++.+++..++.+++++++..+...+.+++++++
T Consensus       457 G~~v~~~eIE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l  513 (559)
T PRK08315        457 GENIYPREIEEFLYTHPKIQDVQ-----------------------VVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFC  513 (559)
T ss_pred             CEEEcHHHHHHHHHhCCCceEEE-----------------------EEecCCCCCCeEEEEEEEeCCCCCCCHHHHHHHH
Confidence            99999999999999999999998                       8888888778889999988776667788999999


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       514 ~~~l~  518 (559)
T PRK08315        514 RGKIA  518 (559)
T ss_pred             Hhhcc
Confidence            87663

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.93  E-value=1.3e-25  Score=199.25  Aligned_cols=141  Identities=24%  Similarity=0.332  Sum_probs=123.7

Q ss_pred             CCCcEEEEECC-CCCccCCCCceEEEEEeC---cccccccCChhhhhhhhc---CCCeEeeccEEEEecCCcEEEecCCC
Q psy7295           1 MSLNIVKVVDS-DNRMVPYGQQGELLIRGY---CNMLRYWGNEEKTKEILG---EDNWLRTGDQFVLTKDGFGSVVGRIK   73 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~g~~GeL~v~g~---~~~~gY~~~~~~t~~~~~---~~~~~~TGD~~~~~~dG~l~~~GR~d   73 (165)
                      +||++++|+|+ +|++++.|+.|||+++||   .++.+||++++.+.+.+.   .++||+|||++++++||+++|+||.|
T Consensus       417 ~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~d  496 (629)
T PRK10524        417 MYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTD  496 (629)
T ss_pred             cCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEec
Confidence            47899999999 899999999999999998   578899999988776542   46899999999999999999999999


Q ss_pred             ceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC--
Q psy7295          74 DLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT--  151 (165)
Q Consensus        74 d~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~--  151 (165)
                      |+||++|++|+|.|||+.|.+||+|.+++                       |++.+++..++.++++++++++...+  
T Consensus       497 d~i~~~G~ri~p~eIE~~l~~~p~V~e~~-----------------------vvg~~d~~~g~~~~~~vv~~~~~~~~~~  553 (629)
T PRK10524        497 DVINVAGHRLGTREIEESISSHPAVAEVA-----------------------VVGVKDALKGQVAVAFVVPKDSDSLADR  553 (629)
T ss_pred             CeEEeCCEEeCHHHHHHHHHhCCCcceEE-----------------------EEccccCCCCeEEEEEEEECCCCccccc
Confidence            99999999999999999999999999998                       99999988899999999987654322  


Q ss_pred             ------HHHHHHHHHhhhc
Q psy7295         152 ------EDELRGYFKGKAI  164 (165)
Q Consensus       152 ------~~~l~~~l~~~l~  164 (165)
                            .++++++++++|.
T Consensus       554 ~~~~~~~~~i~~~~~~~l~  572 (629)
T PRK10524        554 EARLALEKEIMALVDSQLG  572 (629)
T ss_pred             cchHHHHHHHHHHHHhhcC
Confidence                  3567777776653

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.93  E-value=1.4e-25  Score=193.41  Aligned_cols=140  Identities=31%  Similarity=0.466  Sum_probs=124.6

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC--CCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE--DNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~--~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +|+ .++|+|++|.+++.|+.|||+++|+.++.|||++++.|.+.|..  ++|++|||+++++++|++++.||.|++||+
T Consensus       329 ~~g-~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~  407 (501)
T PRK13390        329 VLG-DLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIIS  407 (501)
T ss_pred             ccc-eEEEECCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeE
Confidence            356 68999999999999999999999999999999999999888753  689999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC---HHHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT---EDEL  155 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---~~~l  155 (165)
                      +|++|+|.+||+.|.++|+|.+++                       +++.+++..++.+++++++.++...+   .+++
T Consensus       408 ~G~~v~p~eIE~~l~~~~~v~~~~-----------------------v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l  464 (501)
T PRK13390        408 GGVNIYPQETENALTMHPAVHDVA-----------------------VIGVPDPEMGEQVKAVIQLVEGIRGSDELAREL  464 (501)
T ss_pred             CCeeeCHHHHHHHHHhCCCeeEEE-----------------------EEeccCcccCceeEEEEEecCCCCcchhhHHHH
Confidence            999999999999999999999998                       99999988889999999887654332   3577


Q ss_pred             HHHHHhhhc
Q psy7295         156 RGYFKGKAI  164 (165)
Q Consensus       156 ~~~l~~~l~  164 (165)
                      .++++++|.
T Consensus       465 ~~~~~~~l~  473 (501)
T PRK13390        465 IDYTRSRIA  473 (501)
T ss_pred             HHHHHHhcc
Confidence            888877653

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.93  E-value=2.8e-26  Score=204.85  Aligned_cols=120  Identities=27%  Similarity=0.396  Sum_probs=105.8

Q ss_pred             CCCcEEEEECCC-CC---ccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295           1 MSLNIVKVVDSD-NR---MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~---~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i   76 (165)
                      +||++++|+|++ +.   ...++..|||+++||++|.|||++++.|++.|.++|||+|||+|++|+||+|+|+||.||+|
T Consensus       434 ~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~i  513 (651)
T PLN02736        434 NPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIF  513 (651)
T ss_pred             cCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhhe
Confidence            589999999843 32   22334579999999999999999999999999889999999999999999999999999999


Q ss_pred             EE-CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCC
Q psy7295          77 IR-GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTE  146 (165)
Q Consensus        77 ~~-~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~  146 (165)
                      |+ +|++|+|.+||+.|.+||.|.+|+                       |++.   ..++.++|+|++++
T Consensus       514 k~~~G~~V~p~eIE~~l~~~p~V~~a~-----------------------V~g~---~~~~~~~A~vv~~~  558 (651)
T PLN02736        514 KLAQGEYIAPEKIENVYAKCKFVAQCF-----------------------VYGD---SLNSSLVAVVVVDP  558 (651)
T ss_pred             EcCCCcEechHHHHHHHhcCCCeeEEE-----------------------EEec---CCCceeEEEEEeCH
Confidence            96 799999999999999999999998                       8872   35678999999864

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.93  E-value=1.6e-25  Score=192.24  Aligned_cols=141  Identities=39%  Similarity=0.611  Sum_probs=130.7

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|+++++++.|+.|||+++|+.++.||++++..+...+..++||+|||+++++++|.++++||.||++|++|
T Consensus       343 ~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G  422 (513)
T PRK07656        343 IAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGG  422 (513)
T ss_pred             CCCcEEEEECCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCC
Confidence            57899999999999999999999999999999999999999988887789999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      .+++|.+||+.|.++++|.+++                       +++.+++..++.++++++.+++...+.++++++++
T Consensus       423 ~~v~~~~iE~~l~~~~~i~~~~-----------------------v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~  479 (513)
T PRK07656        423 FNVYPAEVEEVLYEHPAVAEAA-----------------------VIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCR  479 (513)
T ss_pred             EEeCHHHHHHHHHhCCCeeEEE-----------------------EEecCCcccCceEEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       88888888889999999987656678889999988


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       480 ~~l~  483 (513)
T PRK07656        480 EHLA  483 (513)
T ss_pred             hhcc
Confidence            7663

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.93  E-value=2.2e-25  Score=193.91  Aligned_cols=141  Identities=48%  Similarity=0.820  Sum_probs=130.5

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|++.++|+|+++.+++.|+.|||+++|+.++.||++++..+...|..++||+|||+++++++|++++.||.|+++|++|
T Consensus       379 ~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G  458 (558)
T PRK12583        379 QPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGG  458 (558)
T ss_pred             CCCCeEEEECCCCCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECC
Confidence            46899999999999999999999999999999999999999988887789999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      .+|+|.+||+.|.++|+|.+++                       |++.+++..++.+++++++.++...+..+++++++
T Consensus       459 ~~v~~~~IE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~  515 (558)
T PRK12583        459 ENIYPREIEEFLFTHPAVADVQ-----------------------VFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCK  515 (558)
T ss_pred             EEeCHHHHHHHHHhCCCeeEEE-----------------------EEeeecCCCCcEEEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       89988887888999999987766677889999988


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       516 ~~L~  519 (558)
T PRK12583        516 ARIA  519 (558)
T ss_pred             hhcc
Confidence            8763

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.93  E-value=2.3e-25  Score=191.05  Aligned_cols=139  Identities=35%  Similarity=0.516  Sum_probs=125.6

Q ss_pred             CCCcEEEEECCCCCccC-CCC-ceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCC-CceEE
Q psy7295           1 MSLNIVKVVDSDNRMVP-YGQ-QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRI-KDLII   77 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~-~g~-~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~-dd~i~   77 (165)
                      +||++++|+|++|.+++ .|+ .|||+++|+.++.||+++++.+.+.|.+++||+|||++++++||++++.||. |+++|
T Consensus       299 ~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~  378 (471)
T PRK07787        299 LAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIK  378 (471)
T ss_pred             CCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEe
Confidence            47899999999998887 344 8999999999999999999999999988899999999999999999999996 89999


Q ss_pred             ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy7295          78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRG  157 (165)
Q Consensus        78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~  157 (165)
                      ++|++|+|.+||+.|.+++.|.+++                       |++.++...++.+++++++.  ...+.+++.+
T Consensus       379 ~~G~~v~~~eIE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~a~v~~~--~~~~~~~l~~  433 (471)
T PRK07787        379 SGGYRIGAGEIETALLGHPGVREAA-----------------------VVGVPDDDLGQRIVAYVVGA--DDVAADELID  433 (471)
T ss_pred             eCCEEECHHHHHHHHHhCCCcceEE-----------------------EEcccccccCeEEEEEEEeC--CCCCHHHHHH
Confidence            9999999999999999999999998                       89988887889999999873  3467888999


Q ss_pred             HHHhhhc
Q psy7295         158 YFKGKAI  164 (165)
Q Consensus       158 ~l~~~l~  164 (165)
                      +|+++|.
T Consensus       434 ~l~~~l~  440 (471)
T PRK07787        434 FVAQQLS  440 (471)
T ss_pred             HHHhhcc
Confidence            9988764

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.93  E-value=2.3e-25  Score=193.56  Aligned_cols=141  Identities=28%  Similarity=0.466  Sum_probs=126.8

Q ss_pred             CCCcEEEEECC-CCCccCCCCceEEEEEeCcccccccCChhhhhhhhc---CCCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295           1 MSLNIVKVVDS-DNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG---EDNWLRTGDQFVLTKDGFGSVVGRIKDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~---~~~~~~TGD~~~~~~dG~l~~~GR~dd~i   76 (165)
                      +||++++|+|+ +|++++.|+.|||+++|+.++.||++++..+.+.|.   .++||+|||+++++++|++++.||.||++
T Consensus       363 ~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i  442 (546)
T PRK08314        363 TFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMI  442 (546)
T ss_pred             cCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhE
Confidence            47899999996 489999999999999999999999999999988773   34699999999999999999999999999


Q ss_pred             EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCC--CCCHHH
Q psy7295          77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENS--SLTEDE  154 (165)
Q Consensus        77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~  154 (165)
                      |++|.+|+|.+||+.|.++|+|.+++                       |++.+++..++.++++++++++.  ..+.++
T Consensus       443 ~~~G~~v~~~eIE~~i~~~~~v~~~~-----------------------v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~  499 (546)
T PRK08314        443 NASGFKVWPAEVENLLYKHPAIQEAC-----------------------VIATPDPRRGETVKAVVVLRPEARGKTTEEE  499 (546)
T ss_pred             EeCCEEECHHHHHHHHHhCcchheEE-----------------------EEeCCCcccCceeEEEEEECCCCCCCCCHHH
Confidence            99999999999999999999999998                       88998888889999999987653  245688


Q ss_pred             HHHHHHhhhc
Q psy7295         155 LRGYFKGKAI  164 (165)
Q Consensus       155 l~~~l~~~l~  164 (165)
                      ++++|+++|.
T Consensus       500 l~~~~~~~l~  509 (546)
T PRK08314        500 IIAWAREHMA  509 (546)
T ss_pred             HHHHHHHhcc
Confidence            9999988764

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.93  E-value=2.3e-25  Score=193.89  Aligned_cols=136  Identities=32%  Similarity=0.524  Sum_probs=125.4

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +||++++|+|++|.+++.|+.|||+++|+.++.||+++++.+.  +..++||+|||+++++++|+++++||.||+||++|
T Consensus       370 ~~g~~v~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G  447 (538)
T TIGR03208       370 LPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGG  447 (538)
T ss_pred             CCCCEEEEECCCCCCCcCCCCcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEEeccCceEEECC
Confidence            4789999999999999999999999999999999999998765  34689999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.+||+|.+++                       |++.++...++.+++++++..+...+..++.++++
T Consensus       448 ~~v~p~eIE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~  504 (538)
T TIGR03208       448 ENIPVVEIENLLYQHPAVAQVA-----------------------IVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLK  504 (538)
T ss_pred             EEECHHHHHHHHhcCcceeeEE-----------------------EEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       89998888889999999988776678888999887


Q ss_pred             h
Q psy7295         161 G  161 (165)
Q Consensus       161 ~  161 (165)
                      +
T Consensus       505 ~  505 (538)
T TIGR03208       505 A  505 (538)
T ss_pred             h
Confidence            5

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.93  E-value=1.3e-25  Score=214.20  Aligned_cols=122  Identities=26%  Similarity=0.256  Sum_probs=111.6

Q ss_pred             CCCcEEEEECCC--CCccCCCCceEEEEEeCcccccccCChhhhhhhhc----------------------------CCC
Q psy7295           1 MSLNIVKVVDSD--NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG----------------------------EDN   50 (165)
Q Consensus         1 ~pg~~v~vvd~~--g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~----------------------------~~~   50 (165)
                      +|+++++|+|++  ++++|.|+.|||+|+||+++.|||++|+.|.+.|.                            .++
T Consensus       599 ~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1389)
T TIGR03443       599 MKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDR  678 (1389)
T ss_pred             cCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccc
Confidence            478899999975  57899999999999999999999999999998883                            258


Q ss_pred             eEeeccEEEEecCCcEEEecCCCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeec
Q psy7295          51 WLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIR  130 (165)
Q Consensus        51 ~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~  130 (165)
                      ||+|||+|++++||+|+|+||.||+||++|+||+|.|||+.|.+||.|.+++                       |+..+
T Consensus       679 ~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~-----------------------v~~~~  735 (1389)
T TIGR03443       679 LYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENV-----------------------TLVRR  735 (1389)
T ss_pred             eeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeE-----------------------EEEee
Confidence            9999999999999999999999999999999999999999999999999998                       77777


Q ss_pred             CCCCCceEEEEEEeC
Q psy7295         131 DERMGEEIGASIRLT  145 (165)
Q Consensus       131 ~~~~~~~~~a~v~~~  145 (165)
                      +...++.+++++++.
T Consensus       736 ~~~~~~~lva~vv~~  750 (1389)
T TIGR03443       736 DKDEEPTLVSYIVPQ  750 (1389)
T ss_pred             CCCCCeEEEEEEecc
Confidence            777778899998875

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.93  E-value=1.7e-25  Score=194.80  Aligned_cols=133  Identities=29%  Similarity=0.343  Sum_probs=111.5

Q ss_pred             CCCcEEEEECCCC-CccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~~g-~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +||++++|+|+++ .+++.|+.|||+++|++++.|||++++.+     .++||+|||+++++ +|+|+|+||.||+||++
T Consensus       351 ~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~  424 (525)
T PRK05851        351 IPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVA  424 (525)
T ss_pred             CCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEEC
Confidence            5789999999885 56899999999999999999999998643     47899999999997 79999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.|||+.|.+||+|.+++                       |++.+++..++.+.+++.... ...+.+++.++|
T Consensus       425 G~~v~p~eIE~~l~~~p~V~~~~-----------------------vv~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~  480 (525)
T PRK05851        425 GRNIFPTEIERVAAQVRGVREGA-----------------------VVAVGTGEGSARPGLVIAAEF-RGPDEAGARSEV  480 (525)
T ss_pred             CEEeCHHHHHHHHHhCCCcccce-----------------------EEEEEecCCCCceeEEEEEEe-cCcchHHHHHHH
Confidence            99999999999999999999998                       888888777777777665432 123445555555


Q ss_pred             Hhhh
Q psy7295         160 KGKA  163 (165)
Q Consensus       160 ~~~l  163 (165)
                      +++|
T Consensus       481 ~~~l  484 (525)
T PRK05851        481 VQRV  484 (525)
T ss_pred             HHHH
Confidence            5544

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.93  E-value=2.6e-25  Score=194.34  Aligned_cols=140  Identities=33%  Similarity=0.644  Sum_probs=128.3

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +||++++|+|++|++++.|+.|||+++|+.++.|||++++.+.+.|..+|||+|||+++++++|+++++||.+|++|++|
T Consensus       386 ~~g~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G  465 (557)
T PRK07059        386 LPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSG  465 (557)
T ss_pred             cCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECC
Confidence            47899999999999999999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.++|+|.+++                       +++.+++..++.++++++..+ ...+.++++++++
T Consensus       466 ~~i~p~~iE~~l~~~~~V~~~~-----------------------v~~~~~~~~ge~~~~~v~~~~-~~~~~~~l~~~~~  521 (557)
T PRK07059        466 FNVYPNEIEEVVASHPGVLEVA-----------------------AVGVPDEHSGEAVKLFVVKKD-PALTEEDVKAFCK  521 (557)
T ss_pred             EEEcHHHHHHHHHhCCceeEEE-----------------------EEecccCCCCeeEEEEEEeCC-CCCCHHHHHHHHH
Confidence            9999999999999999999998                       889888888889999888654 3466788888888


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       522 ~~l~  525 (557)
T PRK07059        522 ERLT  525 (557)
T ss_pred             Hhcc
Confidence            7653

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.93  E-value=3.1e-25  Score=194.15  Aligned_cols=139  Identities=20%  Similarity=0.234  Sum_probs=110.8

Q ss_pred             CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhh-cCCCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEIL-GEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~-~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +||++++|+|++ +.+++.|+.|||+|+|++++.|||++++.+.... ..++||+|||+|++|++|++++.||.||+||+
T Consensus       359 ~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~  438 (539)
T PRK06334        359 IRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKI  438 (539)
T ss_pred             cCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEE
Confidence            578999999975 8899999999999999999999999998654322 34689999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY  158 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  158 (165)
                      +|++|+|.|||+.|.+||+|.++.                 ....++|++.+++  ...++++++..    .+.++++++
T Consensus       439 ~G~~v~p~eIE~~l~~~~~v~~~~-----------------~~~~~~v~~~~~~--~~~~~~~~~~~----~~~~~~~~~  495 (539)
T PRK06334        439 GAEMVSLEALESILMEGFGQNAAD-----------------HAGPLVVCGLPGE--KVRLCLFTTFP----TSISEVNDI  495 (539)
T ss_pred             CCEEECHHHHHHHHHHccCCcccc-----------------ccCceEEEcCCCC--ceEEEEEEecc----CChHHHHHH
Confidence            999999999999999999999831                 0000126666643  23455555532    356778888


Q ss_pred             HHhh
Q psy7295         159 FKGK  162 (165)
Q Consensus       159 l~~~  162 (165)
                      |+++
T Consensus       496 l~~~  499 (539)
T PRK06334        496 LKNS  499 (539)
T ss_pred             HHhc
Confidence            8775

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.93  E-value=5.2e-25  Score=189.55  Aligned_cols=140  Identities=35%  Similarity=0.546  Sum_probs=129.6

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +++++++|+|++|++++.|+.|||+++|+.++.+|+++++.+++.| .++||+|||+|+++++|.+++.||.|+++|++|
T Consensus       347 ~~~~~~~i~~~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G  425 (523)
T PRK08316        347 VLNVETRVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGG  425 (523)
T ss_pred             CCCcEEEEEcCCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEeCC
Confidence            4688999999999999999999999999999999999999999888 679999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.++++|.+++                       +++.+++..++.++++++++++...+.+++.++++
T Consensus       426 ~~i~~~~iE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  482 (523)
T PRK08316        426 ENVASREVEEALYTHPAVAEVA-----------------------VIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCR  482 (523)
T ss_pred             eEECHHHHHHHHHhCCChheEe-----------------------EecccCcccCCeEEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       99999888889999999988766667788889888


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       483 ~~l~  486 (523)
T PRK08316        483 ARLA  486 (523)
T ss_pred             Hhcc
Confidence            7653

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.93  E-value=3.8e-25  Score=193.15  Aligned_cols=140  Identities=31%  Similarity=0.569  Sum_probs=127.4

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|++.++++|++|++++.|+.|||+++|+.++.|||++++.+.+.|..+|||+|||+++++++|++++.||.||+||++|
T Consensus       388 ~~~~~v~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G  467 (560)
T PRK08751        388 IPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSG  467 (560)
T ss_pred             CCCceEEEECCCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECC
Confidence            47899999999999999999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      .+|+|.+||+.|..+|+|.+++                       |++.++...++.+.++++.. ....+.++++++++
T Consensus       468 ~~v~p~eiE~~l~~~~~v~~~~-----------------------v~~~~~~~~ge~~~~~v~~~-~~~~~~~~l~~~~~  523 (560)
T PRK08751        468 FNVYPNEIEDVIAMMPGVLEVA-----------------------AVGVPDEKSGEIVKVVIVKK-DPALTAEDVKAHAR  523 (560)
T ss_pred             EEEcHHHHHHHHHhCcCeeeeE-----------------------EEecCCCCCCceEEEEEEcC-CCCCCHHHHHHHHH
Confidence            9999999999999999999998                       88988887888888877754 34467788888888


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      +++.
T Consensus       524 ~~l~  527 (560)
T PRK08751        524 ANLT  527 (560)
T ss_pred             Hhhh
Confidence            7764

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.93  E-value=6.4e-25  Score=190.17  Aligned_cols=139  Identities=37%  Similarity=0.622  Sum_probs=129.2

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +||+.++|+|+++++++.|+.|||+++|+.++.||++++..+...| .+|||+|||+++++++|.+++.||.+++++++|
T Consensus       345 ~~g~~v~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G  423 (524)
T PRK06188        345 TPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGG  423 (524)
T ss_pred             cCCcEEEEEcCCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEeccccceecCC
Confidence            5789999999999999999999999999999999999999998888 579999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.++++|.+++                       |++.+++..++.+.+++++++....+.++++++|+
T Consensus       424 ~~i~~~~IE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  480 (524)
T PRK06188        424 FNVFPREVEDVLAEHPAVAQVA-----------------------VIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVK  480 (524)
T ss_pred             EEECHHHHHHHHHhCCCeeEEE-----------------------EEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       88888888889999999988766677889999998


Q ss_pred             hhh
Q psy7295         161 GKA  163 (165)
Q Consensus       161 ~~l  163 (165)
                      +++
T Consensus       481 ~~l  483 (524)
T PRK06188        481 ERK  483 (524)
T ss_pred             Hhc
Confidence            875

>KOG1175|consensus

Probab=99.92  E-value=6.8e-25  Score=194.13  Aligned_cols=139  Identities=27%  Similarity=0.366  Sum_probs=123.3

Q ss_pred             CCCcEEEEECCCCCccCCC-CceEEEEEe--C-cccccccCChhhhhhhhcC--CCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDSDNRMVPYG-QQGELLIRG--Y-CNMLRYWGNEEKTKEILGE--DNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g-~~GeL~v~g--~-~~~~gY~~~~~~t~~~~~~--~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      ++|+.+.|+|++|++++.. ..|+|+++.  | +++++||+|++.....+..  .|+|.|||.+++|+||+++++||.||
T Consensus       420 ~~g~~v~i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DD  499 (626)
T KOG1175|consen  420 FPGYDVQILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDD  499 (626)
T ss_pred             CCCcceEEECCCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccc
Confidence            4789999999999999987 889999987  4 7899999999966555544  79999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHH
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDE  154 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  154 (165)
                      +||++|+|+++.|||+++..||.|.|++                       |++.+++.+|+.+.+||+++++ ..+.++
T Consensus       500 viNvsGhRigtaEIE~al~~hp~VaEsA-----------------------vVg~p~~~~ge~v~aFvvl~~g-~~~~~~  555 (626)
T KOG1175|consen  500 VINVSGHRIGTAEIESALVEHPAVAESA-----------------------VVGSPDPIKGEVVLAFVVLKSG-SHDPEQ  555 (626)
T ss_pred             cccccceeecHHHHHHHHhhCcchhhee-----------------------eecCCCCCCCeEEEEEEEEcCC-CCChHH
Confidence            9999999999999999999999999999                       9999999999999999999987 455566


Q ss_pred             HHHHHHhhh
Q psy7295         155 LRGYFKGKA  163 (165)
Q Consensus       155 l~~~l~~~l  163 (165)
                      |.+.|++.+
T Consensus       556 L~kel~~~V  564 (626)
T KOG1175|consen  556 LTKELVKHV  564 (626)
T ss_pred             HHHHHHHHH
Confidence            655555543

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.92  E-value=5e-25  Score=200.48  Aligned_cols=118  Identities=25%  Similarity=0.280  Sum_probs=104.1

Q ss_pred             CCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEE-C
Q psy7295           2 SLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR-G   79 (165)
Q Consensus         2 pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~-~   79 (165)
                      |+++++|+|.+ +...+.+..|||+++||++|.|||++|+.|++.|.++|||+|||+|++|+||+|+|+||.+|+||. +
T Consensus       521 pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~  600 (746)
T PTZ00342        521 PNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQ  600 (746)
T ss_pred             CcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCC
Confidence            89999999843 444455568999999999999999999999999988999999999999999999999999999995 7


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeC
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLT  145 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~  145 (165)
                      |++|+|.+||+.|.+||.|.+++                       |++..   ....++|+|+++
T Consensus       601 Ge~I~p~eIE~~l~~~p~V~~~~-----------------------VvG~~---~~~~~~Alvv~d  640 (746)
T PTZ00342        601 GEYIETDMLNNLYSQISFINFCV-----------------------VYGDD---SMDGPLAIISVD  640 (746)
T ss_pred             CEEEchHHHHHHHhcCCCccEEE-----------------------EEccC---CccccEEEEECC
Confidence            99999999999999999999998                       88742   233678888764

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.92  E-value=1e-24  Score=191.06  Aligned_cols=140  Identities=39%  Similarity=0.699  Sum_probs=128.6

Q ss_pred             CCCcEEEEECCC--CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVVDSD--NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~--g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +|++.++|+|++  +.+++.|+.|||+++|+.++.||++++..+.+.|. +|||+|||+++++++|++++.||.||++|+
T Consensus       395 ~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~  473 (573)
T PRK05605        395 FPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEEDGFIRIVDRIKELIIT  473 (573)
T ss_pred             CCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhccc-CCCcccCCEEEEcCCCcEEEEeccccceee
Confidence            478999999987  58999999999999999999999999999988884 569999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY  158 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  158 (165)
                      +|++|+|.+||+.+.+++.|.+++                       +++.+++..++.++++++++++...+.++++++
T Consensus       474 ~G~~v~p~eIE~~l~~~~~i~~~~-----------------------v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~  530 (573)
T PRK05605        474 GGFNVYPAEVEEVLREHPGVEDAA-----------------------VVGLPREDGSEEVVAAVVLEPGAALDPEGLRAY  530 (573)
T ss_pred             CCEEECHHHHHHHHHhCcccceEE-----------------------EEeeecccCCeEEEEEEEECCCCCCCHHHHHHH
Confidence            999999999999999999999998                       899888888899999999887766788999999


Q ss_pred             HHhhhc
Q psy7295         159 FKGKAI  164 (165)
Q Consensus       159 l~~~l~  164 (165)
                      ++++|.
T Consensus       531 ~~~~l~  536 (573)
T PRK05605        531 CREHLT  536 (573)
T ss_pred             HHHhCc
Confidence            988763

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.92  E-value=6.5e-25  Score=193.11  Aligned_cols=137  Identities=28%  Similarity=0.469  Sum_probs=121.0

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +||++++|+|++++.++.|+.|||+++|+.++.|||++ +.+...+..++||+|||++++ ++|+++++||.||+||++|
T Consensus       391 ~p~~~v~i~d~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G  468 (579)
T PRK09192        391 LPGHEIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIING  468 (579)
T ss_pred             CCCcEEEEECCCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECC
Confidence            47899999999999999999999999999999999999 677777778899999999999 9999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChH--HhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDIL--EAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY  158 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~--~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  158 (165)
                      ++|+|.+||+.|++||+|.  +++                       +++.+++. ++.++++++..++...+.+++.++
T Consensus       469 ~~v~p~eIE~~l~~~p~V~~~~~~-----------------------v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~  524 (579)
T PRK09192        469 RNIWPQDIEWIAEQEPELRSGDAA-----------------------AFSIAQEN-GEKIVLLVQCRISDEERRGQLIHA  524 (579)
T ss_pred             CccCHHHHHHHHHhcCCccCCcEE-----------------------EEEeccCC-CeeEEEEEEecCCChHHHHHHHHH
Confidence            9999999999999999998  776                       88888775 458888888766555566788888


Q ss_pred             HHhhh
Q psy7295         159 FKGKA  163 (165)
Q Consensus       159 l~~~l  163 (165)
                      +++.+
T Consensus       525 ~~~~l  529 (579)
T PRK09192        525 LAALV  529 (579)
T ss_pred             HHHHH
Confidence            87765

>PRK12316 peptide synthase; Provisional

Probab=99.92  E-value=4.8e-25  Score=228.65  Aligned_cols=140  Identities=25%  Similarity=0.294  Sum_probs=128.1

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhc-------CCCeEeeccEEEEecCCcEEEecCCC
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG-------EDNWLRTGDQFVLTKDGFGSVVGRIK   73 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~-------~~~~~~TGD~~~~~~dG~l~~~GR~d   73 (165)
                      ++|++++|+|++++++|.|.+|||+|+||++++|||++|+.|++.|.       .++||+|||++++++||.++|+||+|
T Consensus      2325 ~~~~~~~i~d~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d 2404 (5163)
T PRK12316       2325 LGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRID 2404 (5163)
T ss_pred             cCCCEEEEECCCCCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCC
Confidence            47899999999999999999999999999999999999999999984       24699999999999999999999999


Q ss_pred             ceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHH
Q psy7295          74 DLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTED  153 (165)
Q Consensus        74 d~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~  153 (165)
                      ++||++|+||+|.|||+.|.++|+|.+++                       |++.+++ .++.+++++++.++...+.+
T Consensus      2405 ~~iki~G~rie~~eIE~~l~~~~~v~~a~-----------------------v~~~~~~-~~~~l~a~v~~~~~~~~~~~ 2460 (5163)
T PRK12316       2405 HQVKIRGFRIELGEIEARLQAHPAVREAV-----------------------VVAQDGA-SGKQLVAYVVPDDAAEDLLA 2460 (5163)
T ss_pred             CeEEEcCccCChHHHHHHHhhCcccceEE-----------------------EEEEecC-CCeEEEEEEEecCCCccCHH
Confidence            99999999999999999999999999998                       7776655 77899999998877677889


Q ss_pred             HHHHHHHhhhc
Q psy7295         154 ELRGYFKGKAI  164 (165)
Q Consensus       154 ~l~~~l~~~l~  164 (165)
                      +++++++++|.
T Consensus      2461 ~l~~~l~~~Lp 2471 (5163)
T PRK12316       2461 ELRAWLAARLP 2471 (5163)
T ss_pred             HHHHHHHhhCc
Confidence            99999988763

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.92  E-value=1.1e-24  Score=192.22  Aligned_cols=136  Identities=33%  Similarity=0.489  Sum_probs=118.7

Q ss_pred             EEEEECCC-CCccCC--CCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcE
Q psy7295           5 IVKVVDSD-NRMVPY--GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE   81 (165)
Q Consensus         5 ~v~vvd~~-g~~~~~--g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~   81 (165)
                      .+.++|++ +.+++.  ++.|||+++||.++.|||++++.+.+.| .+|||+|||++++|+||++++.||.||+||++|+
T Consensus       373 ~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~  451 (579)
T PLN03102        373 DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGE  451 (579)
T ss_pred             ceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCE
Confidence            46677754 666764  3689999999999999999999999988 5789999999999999999999999999999999


Q ss_pred             EEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCC----------C
Q psy7295          82 NIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSL----------T  151 (165)
Q Consensus        82 ~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~----------~  151 (165)
                      +|+|.+||+.|.+||.|.+++                       |++.+++..++.++++|++.++...          +
T Consensus       452 ~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~  508 (579)
T PLN03102        452 NISSVEVENVLYKYPKVLETA-----------------------VVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTR  508 (579)
T ss_pred             EECHHHHHHHHHhCCCcceeE-----------------------EEeccCccccceeEEEEEecCccccccccccccccc
Confidence            999999999999999999998                       9999998888999999998754332          3


Q ss_pred             HHHHHHHHHhhhc
Q psy7295         152 EDELRGYFKGKAI  164 (165)
Q Consensus       152 ~~~l~~~l~~~l~  164 (165)
                      ..+++++++++|.
T Consensus       509 ~~~l~~~~~~~L~  521 (579)
T PLN03102        509 ERDLIEYCRENLP  521 (579)
T ss_pred             HHHHHHHHHhhcc
Confidence            5678888887764

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.92  E-value=1.6e-24  Score=189.13  Aligned_cols=133  Identities=26%  Similarity=0.429  Sum_probs=123.1

Q ss_pred             EEEECC-CCCccCCCC------------ceEEEE-EeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecC
Q psy7295           6 VKVVDS-DNRMVPYGQ------------QGELLI-RGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGR   71 (165)
Q Consensus         6 v~vvd~-~g~~~~~g~------------~GeL~v-~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR   71 (165)
                      ++++|+ +|.+++.|+            .|||++ +|+.++.|||++++.+.+.| .+|||+|||+++++++|++++.||
T Consensus       324 ~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR  402 (529)
T PRK07867        324 VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGR  402 (529)
T ss_pred             EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEecc
Confidence            678885 588899888            999999 99999999999999998888 579999999999999999999999


Q ss_pred             CCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC
Q psy7295          72 IKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT  151 (165)
Q Consensus        72 ~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~  151 (165)
                      .||+||++|++|+|.+||+.|.++|+|.+++                       |++.+++..++.+.+++++.++...+
T Consensus       403 ~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~-----------------------V~g~~~~~~g~~~~a~vv~~~~~~~~  459 (529)
T PRK07867        403 LGDWMRVDGENLGTAPIERILLRYPDATEVA-----------------------VYAVPDPVVGDQVMAALVLAPGAKFD  459 (529)
T ss_pred             ccCeEEECCEEeCHHHHHHHHHhCCCeeEEE-----------------------EEeccCCCCCeeEEEEEEECCCCCCC
Confidence            9999999999999999999999999999998                       99999998999999999998777788


Q ss_pred             HHHHHHHHHhh
Q psy7295         152 EDELRGYFKGK  162 (165)
Q Consensus       152 ~~~l~~~l~~~  162 (165)
                      .++++++|+++
T Consensus       460 ~~~l~~~~~~~  470 (529)
T PRK07867        460 PDAFAEFLAAQ  470 (529)
T ss_pred             HHHHHHHHHhh
Confidence            89999998764

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.92  E-value=1.3e-24  Score=186.95  Aligned_cols=141  Identities=25%  Similarity=0.390  Sum_probs=128.4

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC-----------CCeEeeccEEEEecCCcEEEe
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE-----------DNWLRTGDQFVLTKDGFGSVV   69 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~-----------~~~~~TGD~~~~~~dG~l~~~   69 (165)
                      +|+++++|+|++|.+++.|+.|||+++|+.++.|||+++..+...|..           ++||+|||+++++++|++++.
T Consensus       334 ~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~  413 (515)
T TIGR03098       334 IPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFV  413 (515)
T ss_pred             cCCCEEEEECCCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEE
Confidence            478999999999999999999999999999999999999888777642           248999999999999999999


Q ss_pred             cCCCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC
Q psy7295          70 GRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS  149 (165)
Q Consensus        70 GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~  149 (165)
                      ||.+|++|++|.+|+|.+||+.|.++|.|.+++                       |++.+++..++.++++++...+..
T Consensus       414 GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~~~~~~~~~~~  470 (515)
T TIGR03098       414 GRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAV-----------------------AFGVPDPTLGQAIVLVVTPPGGEE  470 (515)
T ss_pred             eccccceecCCEEeCHHHHHHHHhcCCCeeEEE-----------------------EEeccCcccCceEEEEEEeCCCCC
Confidence            999999999999999999999999999999998                       999999889999999998766666


Q ss_pred             CCHHHHHHHHHhhhc
Q psy7295         150 LTEDELRGYFKGKAI  164 (165)
Q Consensus       150 ~~~~~l~~~l~~~l~  164 (165)
                      .+..+++++++++|.
T Consensus       471 ~~~~~l~~~l~~~l~  485 (515)
T TIGR03098       471 LDRAALLAECRARLP  485 (515)
T ss_pred             CCHHHHHHHHHhhCc
Confidence            788899999988764

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.92  E-value=1.4e-24  Score=189.91  Aligned_cols=140  Identities=31%  Similarity=0.544  Sum_probs=128.3

Q ss_pred             CCCcEEEEECC-CCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDS-DNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|++.++++|+ ++.+++.|+.|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++++||.||+||++
T Consensus       382 ~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~  460 (563)
T PRK06710        382 WPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVAS  460 (563)
T ss_pred             CCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCCCcEEEeeccccEEEEC
Confidence            46888999985 58999999999999999999999999999998877 57899999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |.+|+|.+||+.|.++|.|.+++                       |++.+++..++.++++++..++...+.+++++++
T Consensus       461 G~~v~p~eiE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~  517 (563)
T PRK06710        461 GFNVYPREVEEVLYEHEKVQEVV-----------------------TIGVPDPYRGETVKAFVVLKEGTECSEEELNQFA  517 (563)
T ss_pred             CEEECHHHHHHHHHhCcceeeEE-----------------------EEccccCCcCceeEEEEEECCCCCCCHHHHHHHH
Confidence            99999999999999999999998                       9999988888999999998877667888999998


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       518 ~~~l~  522 (563)
T PRK06710        518 RKYLA  522 (563)
T ss_pred             HHhcc
Confidence            87653

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.92  E-value=1e-24  Score=189.91  Aligned_cols=137  Identities=37%  Similarity=0.595  Sum_probs=125.8

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|++.++++|+++.+++.|+.|||+++|+.++.|||++++.+...|..++||+|||+++++++|+++++||.+|+|+++|
T Consensus       361 ~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G  440 (547)
T PRK06087        361 AAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGG  440 (547)
T ss_pred             CCCceEEEEcCCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCC
Confidence            47899999999999999999999999999999999999999999887889999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCC-CCCCCHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTE-NSSLTEDELRGYF  159 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~-~~~~~~~~l~~~l  159 (165)
                      .+|+|.+||+.|.++|+|.+++                       +++.+++..++.+++++++.+ ....+.+++.+++
T Consensus       441 ~~v~p~~iE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~  497 (547)
T PRK06087        441 ENISSREVEDILLQHPKIHDAC-----------------------VVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFF  497 (547)
T ss_pred             EEECHHHHHHHHHhCCCeeEEE-----------------------EEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHH
Confidence            9999999999999999999998                       999988888899999999865 3445667777776


Q ss_pred             H
Q psy7295         160 K  160 (165)
Q Consensus       160 ~  160 (165)
                      .
T Consensus       498 ~  498 (547)
T PRK06087        498 S  498 (547)
T ss_pred             H
Confidence            4

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.92  E-value=1.6e-24  Score=204.93  Aligned_cols=141  Identities=21%  Similarity=0.256  Sum_probs=122.5

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC------CCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE------DNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~------~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      ++|+.++|+|++++++|.|..|||+|+|++++.||+++++.|.+.|..      ++||+|||++++++||.++++||.|+
T Consensus       782 ~~~~~~~i~d~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~  861 (1296)
T PRK10252        782 VWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDD  861 (1296)
T ss_pred             cCCCEEEEECCCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCC
Confidence            478899999999999999999999999999999999999999998853      35999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeec----CC--CCCceEEEEEEeCCCC
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIR----DE--RMGEEIGASIRLTENS  148 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~--~~~~~~~a~v~~~~~~  148 (165)
                      +||++|++|+|.|||+.|.++|+|.+++                       |+...    +.  .....++++++...+.
T Consensus       862 ~ik~~G~ri~~~eIE~~l~~~~~v~~a~-----------------------v~~~~~~~~~~~~~~~~~lva~v~~~~~~  918 (1296)
T PRK10252        862 QLKIRGQRIELGEIDRAMQALPDVEQAV-----------------------THACVINQAAATGGDARQLVGYLVSQSGL  918 (1296)
T ss_pred             eEEEeeEEecHHHHHHHHHhCccccceE-----------------------EEEEeccccccCCCCccEEEEEEEcCCCC
Confidence            9999999999999999999999999997                       44331    11  1224788999887665


Q ss_pred             CCCHHHHHHHHHhhhc
Q psy7295         149 SLTEDELRGYFKGKAI  164 (165)
Q Consensus       149 ~~~~~~l~~~l~~~l~  164 (165)
                      ..+.++++++++++|.
T Consensus       919 ~~~~~~l~~~l~~~Lp  934 (1296)
T PRK10252        919 PLDTSALQAQLRERLP  934 (1296)
T ss_pred             CCCHHHHHHHHHhhCc
Confidence            6678899999988763

>PRK12467 peptide synthase; Provisional

Probab=99.92  E-value=5.5e-25  Score=225.16  Aligned_cols=139  Identities=27%  Similarity=0.285  Sum_probs=125.5

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCC-------CeEeeccEEEEecCCcEEEecCCC
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED-------NWLRTGDQFVLTKDGFGSVVGRIK   73 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~-------~~~~TGD~~~~~~dG~l~~~GR~d   73 (165)
                      +||++++|+|++++++|.|++|||+|+|+++++|||++|+.|++.|..+       +||+|||++++++||+++|+||+|
T Consensus      3415 ~~~~~~~v~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d 3494 (3956)
T PRK12467       3415 VAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRID 3494 (3956)
T ss_pred             cCCCEEEEECCCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEecccc
Confidence            5899999999999999999999999999999999999999999999544       479999999999999999999999


Q ss_pred             ceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHH
Q psy7295          74 DLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTED  153 (165)
Q Consensus        74 d~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~  153 (165)
                      ++||++|+||+|.|||+.|.++|+|.+++                       |++.. +..++.++++++.........+
T Consensus      3495 ~~iki~G~rIe~~EIE~~l~~~p~V~~a~-----------------------v~~~~-~~~~~~lva~v~~~~~~~~~~~ 3550 (3956)
T PRK12467       3495 HQVKIRGFRIELGEIEARLLQHPSVREAV-----------------------VLARD-GAGGKQLVAYVVPADPQGDWRE 3550 (3956)
T ss_pred             ceEeeceEeecHHHHHHHHhhCcccceEE-----------------------EEEec-CCCCcEEEEEEeCCCCCcccHH
Confidence            99999999999999999999999999998                       66653 4467899999998765556778


Q ss_pred             HHHHHHHhhh
Q psy7295         154 ELRGYFKGKA  163 (165)
Q Consensus       154 ~l~~~l~~~l  163 (165)
                      +++++++++|
T Consensus      3551 ~l~~~l~~~L 3560 (3956)
T PRK12467       3551 TLRDHLAASL 3560 (3956)
T ss_pred             HHHHHHhccC
Confidence            8999888876

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.92  E-value=2.6e-24  Score=187.66  Aligned_cols=140  Identities=36%  Similarity=0.615  Sum_probs=127.2

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|++.++|+|+++++++.|+.|||+++|+.++.||+++++.+.+.| .++||+|||+++++++|.++++||.||+||++|
T Consensus       351 ~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G  429 (542)
T PRK07786        351 IPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGG  429 (542)
T ss_pred             CCCceEEEECCCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEEeCC
Confidence            4789999999999999999999999999999999999999999888 579999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCC-CCCHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENS-SLTEDELRGYF  159 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~-~~~~~~l~~~l  159 (165)
                      .+|+|.+||+.|.++|.|.+++                       |++.+++..++.+++++++.+.. .....++.++|
T Consensus       430 ~~v~~~eiE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l  486 (542)
T PRK07786        430 ENIYCAEVENVLASHPDIVEVA-----------------------VIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFL  486 (542)
T ss_pred             EEECHHHHHHHHHhCCCccEEE-----------------------EEeccCcccCceEEEEEEECCCCCCCCHHHHHHHH
Confidence            9999999999999999999998                       88888887788899998876543 35678888888


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      ++++.
T Consensus       487 ~~~l~  491 (542)
T PRK07786        487 TDRLA  491 (542)
T ss_pred             Hhhcc
Confidence            87653

>PRK12316 peptide synthase; Provisional

Probab=99.92  E-value=1e-24  Score=226.16  Aligned_cols=137  Identities=26%  Similarity=0.293  Sum_probs=125.6

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhc------CCCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG------EDNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~------~~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      +||++++|+|++++++|.|+.|||+|+||++++||+++|+.|++.|.      .++||+|||++++++||.|+|+||.|+
T Consensus       831 ~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~  910 (5163)
T PRK12316        831 IANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDH  910 (5163)
T ss_pred             cCCCEEEEECCCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCC
Confidence            47899999999999999999999999999999999999999999884      346999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHH
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDE  154 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  154 (165)
                      +||++|+||+|.|||++|.+||+|.+|+                       |++.+    ++.++++|++.++.....++
T Consensus       911 ~ik~~G~rI~~~EIE~~l~~~p~V~~a~-----------------------V~~~~----~~~lva~vv~~~~~~~~~~~  963 (5163)
T PRK12316        911 QVKLRGLRIELGEIEARLLEHPWVREAA-----------------------VLAVD----GKQLVGYVVLESEGGDWREA  963 (5163)
T ss_pred             EEEEceEEcChHHHHHHHHhCCCcceEE-----------------------EEEcC----CCeEEEEEEccCCCCCCHHH
Confidence            9999999999999999999999999998                       77765    67899999987766677889


Q ss_pred             HHHHHHhhhc
Q psy7295         155 LRGYFKGKAI  164 (165)
Q Consensus       155 l~~~l~~~l~  164 (165)
                      ++++++++|.
T Consensus       964 l~~~l~~~Lp  973 (5163)
T PRK12316        964 LKAHLAASLP  973 (5163)
T ss_pred             HHHHHHhhCC
Confidence            9999988764

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.92  E-value=1.4e-24  Score=189.61  Aligned_cols=122  Identities=34%  Similarity=0.546  Sum_probs=110.5

Q ss_pred             CCCcEEEEECCCCC-c-----cCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDSDNR-M-----VPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~~g~-~-----~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      +||++++|+|+++. +     ++.|+.|||+++||.++.|||++++.+.+.| .+|||+|||++++|++|++++.||.||
T Consensus       348 ~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~~  426 (540)
T PRK05857        348 YPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSSE  426 (540)
T ss_pred             cCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEeccccc
Confidence            47899999998865 2     3457899999999999999999999998888 578999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCC
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTE  146 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~  146 (165)
                      +||++|.+|+|.+||+.|..||+|.+++                       |++.++...++.++++++..+
T Consensus       427 ~ik~~G~~v~p~eIE~~l~~~~~V~~~~-----------------------v~~~~~~~~~~~~~~~vv~~~  475 (540)
T PRK05857        427 MIICGGVNIAPDEVDRIAEGVSGVREAA-----------------------CYEIPDEEFGALVGLAVVASA  475 (540)
T ss_pred             cEecCCEEECHHHHHHHHHhCCCeeEEE-----------------------EEecCccccccceEEEEEeCC
Confidence            9999999999999999999999999998                       899988878888888887654

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.92  E-value=1.5e-24  Score=195.63  Aligned_cols=119  Identities=26%  Similarity=0.342  Sum_probs=101.8

Q ss_pred             CCCcEEEEEC-CCCC-cc--CCCCceEEEEEeCcccccccCChhhhhhhhc--CCC--eEeeccEEEEecCCcEEEecCC
Q psy7295           1 MSLNIVKVVD-SDNR-MV--PYGQQGELLIRGYCNMLRYWGNEEKTKEILG--EDN--WLRTGDQFVLTKDGFGSVVGRI   72 (165)
Q Consensus         1 ~pg~~v~vvd-~~g~-~~--~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~--~~~--~~~TGD~~~~~~dG~l~~~GR~   72 (165)
                      +|+++++|+| +++. .+  +++..|||+++||++|.|||++|+.|++.|.  ++|  ||+|||+|++|+||+|+|+||.
T Consensus       478 ~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~  557 (696)
T PLN02387        478 LPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRK  557 (696)
T ss_pred             CCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcc
Confidence            5899999998 4443 22  3445799999999999999999999999983  345  9999999999999999999999


Q ss_pred             CceEEE-CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeC
Q psy7295          73 KDLIIR-GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLT  145 (165)
Q Consensus        73 dd~i~~-~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~  145 (165)
                      ||+||+ +|++|+|.+||+.|.+||.|.+++                       |++.+.   ...++++|+++
T Consensus       558 kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~-----------------------V~g~~~---~~~~~a~vv~~  605 (696)
T PLN02387        558 KDIVKLQHGEYVSLGKVEAALSVSPYVDNIM-----------------------VHADPF---HSYCVALVVPS  605 (696)
T ss_pred             cceEECCCCeEEchHHHHHHHhcCCCeeEEE-----------------------EEecCC---cceEEEEEEeC
Confidence            999997 699999999999999999999988                       887542   24677888864

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.92  E-value=3.7e-24  Score=187.07  Aligned_cols=131  Identities=27%  Similarity=0.439  Sum_probs=117.3

Q ss_pred             EECCCCCcc-CCCCceEEEEE-eCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcEEECh
Q psy7295           8 VVDSDNRMV-PYGQQGELLIR-GYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYP   85 (165)
Q Consensus         8 vvd~~g~~~-~~g~~GeL~v~-g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~~   85 (165)
                      ++|++|+.+ +.+..|||+++ |++++.|||++++.+.+.| .+|||+|||+++++++|++++.||.||+||++|++|+|
T Consensus       337 ~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p  415 (540)
T PRK13388        337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSA  415 (540)
T ss_pred             eccCccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCH
Confidence            556666665 35679999998 9999999999999999888 57899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhh
Q psy7295          86 SEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK  162 (165)
Q Consensus        86 ~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  162 (165)
                      .+||+.|.++|+|.+|+                       |++.+++..++.+++++++.++...+.++++++++.+
T Consensus       416 ~eIE~~l~~~~~V~~~~-----------------------v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~  469 (540)
T PRK13388        416 APIERILLRHPAINRVA-----------------------VYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQ  469 (540)
T ss_pred             HHHHHHHHhCCCceEEE-----------------------EEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhh
Confidence            99999999999999998                       9999988888888898888777667888899888753

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.92  E-value=4.8e-24  Score=183.59  Aligned_cols=138  Identities=33%  Similarity=0.608  Sum_probs=124.7

Q ss_pred             CcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcEE
Q psy7295           3 LNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGEN   82 (165)
Q Consensus         3 g~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~   82 (165)
                      ++.++++|+++.+++.|+.|||+++|+.++.|||++++.+...+.+++||+|||+++++++|.+++.||.|+++|++|.+
T Consensus       322 ~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~  401 (502)
T PRK08276        322 LGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVN  401 (502)
T ss_pred             ccEEEEECCCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEE
Confidence            46789999999999999999999999999999999999999999777999999999999999999999999999999999


Q ss_pred             EChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCH---HHHHHHH
Q psy7295          83 IYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTE---DELRGYF  159 (165)
Q Consensus        83 v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---~~l~~~l  159 (165)
                      |+|.+||..|.++|+|.+++                       +++..++..++.+++++++.++...+.   +++++++
T Consensus       402 v~~~~iE~~i~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~  458 (502)
T PRK08276        402 IYPQEIENLLVTHPKVADVA-----------------------VFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWL  458 (502)
T ss_pred             eCHHHHHHHHHhCCCcceEE-----------------------EEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHH
Confidence            99999999999999999998                       888888888899999999876543332   3677777


Q ss_pred             Hhhh
Q psy7295         160 KGKA  163 (165)
Q Consensus       160 ~~~l  163 (165)
                      +++|
T Consensus       459 ~~~l  462 (502)
T PRK08276        459 RGRL  462 (502)
T ss_pred             Hhhc
Confidence            7765

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.92  E-value=1.3e-24  Score=196.10  Aligned_cols=101  Identities=28%  Similarity=0.439  Sum_probs=94.0

Q ss_pred             CCCcEEEEECCCC--CccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEE-
Q psy7295           1 MSLNIVKVVDSDN--RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLII-   77 (165)
Q Consensus         1 ~pg~~v~vvd~~g--~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~-   77 (165)
                      +||++++|+|+++  ...+++..|||+|+||+++.|||++|+.|++.|..+|||+|||+|++|+||+|+|+||.||+|| 
T Consensus       485 ~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~  564 (700)
T PTZ00216        485 LKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKN  564 (700)
T ss_pred             CCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheec
Confidence            5899999999875  3355677899999999999999999999999998899999999999999999999999999999 


Q ss_pred             ECcEEEChHHHHHHHhcCCChHHh
Q psy7295          78 RGGENIYPSEIEDFLTTHPDILEA  101 (165)
Q Consensus        78 ~~G~~v~~~eIE~~l~~~~~v~~a  101 (165)
                      ++|++|+|.+||+.|.+||.|.++
T Consensus       565 ~~G~~I~p~eIE~~l~~~p~V~~~  588 (700)
T PTZ00216        565 CLGEYIALEALEALYGQNELVVPN  588 (700)
T ss_pred             CCCceeccHHHHHHHhcCcCcccc
Confidence            899999999999999999999974

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.92  E-value=3.9e-24  Score=183.71  Aligned_cols=139  Identities=24%  Similarity=0.162  Sum_probs=118.3

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhc---CCCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG---EDNWLRTGDQFVLTKDGFGSVVGRIKDLII   77 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~---~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~   77 (165)
                      +|+++++|+|+++.+++.|+.|||+++|+.++.||+++++.+.+.|.   ..+||+|||+|+++++ ++++.||.+|+|+
T Consensus       322 ~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~  400 (502)
T TIGR01734       322 KPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIK  400 (502)
T ss_pred             cCCCEEEEECCCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEE
Confidence            47899999999999999999999999999999999999999988773   2369999999999976 9999999999999


Q ss_pred             ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeec-CCCCCceEEEEEEeCCCCCCC----H
Q psy7295          78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIR-DERMGEEIGASIRLTENSSLT----E  152 (165)
Q Consensus        78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~a~v~~~~~~~~~----~  152 (165)
                      ++|++|+|.+||+.|.++|.|.+++                       +++.. .+...+.+++++++.......    .
T Consensus       401 ~~G~~v~~~~IE~~l~~~~~v~~~~-----------------------vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  457 (502)
T TIGR01734       401 LHGYRIELEDIEFNLRQSSYIESAV-----------------------VVPKYNKDHKVEYLIAAIVPETEDFEKEFQLT  457 (502)
T ss_pred             ECcEEeCHHHHHHHHHcCCCccEEE-----------------------EEEEEcCCCCceEEEEEEEecccccccchhhH
Confidence            9999999999999999999999998                       77755 445667888888876533222    2


Q ss_pred             HHHHHHHHhhh
Q psy7295         153 DELRGYFKGKA  163 (165)
Q Consensus       153 ~~l~~~l~~~l  163 (165)
                      .++++.++++|
T Consensus       458 ~~i~~~~~~~l  468 (502)
T TIGR01734       458 KAIKKELKKSL  468 (502)
T ss_pred             HHHHHHHhhhC
Confidence            55677776654

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.92  E-value=1.8e-24  Score=202.02  Aligned_cols=135  Identities=28%  Similarity=0.389  Sum_probs=120.1

Q ss_pred             CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcC---CCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295           1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE---DNWLRTGDQFVLTKDGFGSVVGRIKDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~---~~~~~TGD~~~~~~dG~l~~~GR~dd~i   76 (165)
                      +||++++|+|++ |+++|.|+.|||+++||.++.|||++++.|++.+.+   ++||+|||++++|+||++++.||.||++
T Consensus       966 ~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i 1045 (1146)
T PRK08633        966 LPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFA 1045 (1146)
T ss_pred             CCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchh
Confidence            478999999965 899999999999999999999999999999888843   3899999999999999999999999999


Q ss_pred             EECcEEEChHHHHHHHhcCCC--hHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHH
Q psy7295          77 IRGGENIYPSEIEDFLTTHPD--ILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDE  154 (165)
Q Consensus        77 ~~~G~~v~~~eIE~~l~~~~~--v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  154 (165)
                      |++|++|+|.|||+.|.+||+  +.+++                       |++.+++..++.++++++..   ..+.++
T Consensus      1046 ~~~G~~v~~~eiE~~l~~~~~~~~~~~~-----------------------v~~~~~~~~g~~~~~~v~~~---~~~~~~ 1099 (1146)
T PRK08633       1046 KIGGEMVPLGAVEEELAKALGGEEVVFA-----------------------VTAVPDEKKGEKLVVLHTCG---AEDVEE 1099 (1146)
T ss_pred             hhCcEEECHHHHHHHHHhccCCCCceEE-----------------------EEeccCCCCCcEEEEEEecC---ccCHHH
Confidence            999999999999999999984  55666                       88999998999999988862   346678


Q ss_pred             HHHHHHh
Q psy7295         155 LRGYFKG  161 (165)
Q Consensus       155 l~~~l~~  161 (165)
                      +++++++
T Consensus      1100 l~~~~~~ 1106 (1146)
T PRK08633       1100 LKRAIKE 1106 (1146)
T ss_pred             HHHHHHh
Confidence            8887764

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.92  E-value=5.5e-24  Score=184.40  Aligned_cols=137  Identities=33%  Similarity=0.516  Sum_probs=123.9

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|++.++|+|++|++++.|+.|||+++|+.++.+|++++..   .+ .+|||+|||++++|++|++++.||.||+||++|
T Consensus       351 ~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G  426 (516)
T PRK13383        351 VAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV-VDGMTSTGDMGYLDNAGRLFIVGREDDMIISGG  426 (516)
T ss_pred             CCCcEEEEECCCCCCCCCCCceEEEEecCcccccccCCchh---he-ecCceecceeEEEcCCccEEEeccccceEEECC
Confidence            47899999999999999999999999999999999987542   22 479999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      .+|+|.+||+.|.++|.|.+++                       +++.+++..++.+.++++++++...+.++++++++
T Consensus       427 ~~v~~~eiE~~l~~~~~v~~~~-----------------------vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~  483 (516)
T PRK13383        427 ENVYPRAVENALAAHPAVADNA-----------------------VIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLK  483 (516)
T ss_pred             EEECHHHHHHHHHhCCCeeEEE-----------------------EEeccccccCceEEEEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       88988888889999999988766667788999998


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      +++.
T Consensus       484 ~~l~  487 (516)
T PRK13383        484 DRVS  487 (516)
T ss_pred             Hhcc
Confidence            8763

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.91  E-value=4.5e-24  Score=182.57  Aligned_cols=137  Identities=36%  Similarity=0.592  Sum_probs=123.5

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|++++++.|+ +++++.|+.|||+++||.++.||++++..+...| .++||+|||++++++||++++.||+||++|++|
T Consensus       313 ~~~~~~~i~~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G  390 (483)
T PRK03640        313 LFPCELKIEKD-GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGG  390 (483)
T ss_pred             cCCcEEEEecC-CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEeCC
Confidence            47899999886 4899999999999999999999999999998888 678999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      .+|+|.+||+.+.++++|.+++                       +++.+++..+..++++++..  ...+.++++++|+
T Consensus       391 ~~v~~~~ie~~i~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~  445 (483)
T PRK03640        391 ENIYPAEIEEVLLSHPGVAEAG-----------------------VVGVPDDKWGQVPVAFVVKS--GEVTEEELRHFCE  445 (483)
T ss_pred             EEECHHHHHHHHHhCCCeeEEE-----------------------EEeCCCcccCCceEEEEEeC--CCCCHHHHHHHHH
Confidence            9999999999999999999998                       88888887788888888753  3567888999998


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       446 ~~l~  449 (483)
T PRK03640        446 EKLA  449 (483)
T ss_pred             Hhcc
Confidence            7663

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.91  E-value=6.2e-24  Score=183.40  Aligned_cols=140  Identities=32%  Similarity=0.515  Sum_probs=126.5

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccc-cccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNML-RYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~-gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|++.++++|+++++++.|+.|||+++++.++. +|++++..+...+ .++||+|||+++++++|++++.||.||++|++
T Consensus       330 ~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~  408 (509)
T PRK12406        330 APGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVISG  408 (509)
T ss_pred             CCCcEEEEECCCCCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEEC
Confidence            478999999999999999999999999998765 8999998887665 68999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |.+|+|.+||+.|.++|+|.+++                       +++.+++..++.+++++++.++...+.+++++++
T Consensus       409 G~~v~~~~IE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l  465 (509)
T PRK12406        409 GVNIYPAEIEAVLHAVPGVHDCA-----------------------VFGIPDAEFGEALMAVVEPQPGATLDEADIRAQL  465 (509)
T ss_pred             CEEECHHHHHHHHHhCCCeeEEE-----------------------EEeeeccccCceeEEEEEECCCCCCCHHHHHHHH
Confidence            99999999999999999999998                       8888888788899999998766556788999998


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      ++++.
T Consensus       466 ~~~l~  470 (509)
T PRK12406        466 KARLA  470 (509)
T ss_pred             HHhcc
Confidence            88764

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.91  E-value=3.7e-24  Score=187.80  Aligned_cols=120  Identities=34%  Similarity=0.542  Sum_probs=106.8

Q ss_pred             cEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhc-----------CCCeEeeccEEEEecCCcEEEecC
Q psy7295           4 NIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG-----------EDNWLRTGDQFVLTKDGFGSVVGR   71 (165)
Q Consensus         4 ~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~-----------~~~~~~TGD~~~~~~dG~l~~~GR   71 (165)
                      .+++|+|++ +++++.|+.|||+++||.++.|||++++.|++.|.           +++||+|||+++++ +|++++.||
T Consensus       379 ~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR  457 (578)
T PRK05850        379 PTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGR  457 (578)
T ss_pred             CEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcc
Confidence            688999965 78999999999999999999999999999999884           25799999999998 999999999


Q ss_pred             CCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC
Q psy7295          72 IKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS  149 (165)
Q Consensus        72 ~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~  149 (165)
                      .+|+||++|++|+|.|||+.|.+||.+. ++                       +++++++ .++.+++++++++...
T Consensus       458 ~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~-----------------------v~~v~~~-~~~~~~a~v~~~~~~~  510 (578)
T PRK05850        458 IKDLLIVDGRNHYPDDIEATIQEITGGR-VA-----------------------AISVPDD-GTEKLVAIIELKKRGD  510 (578)
T ss_pred             cccEEEECCeecCHHHHHHHHHHhcCCc-EE-----------------------EEEecCC-CceEEEEEEEeccccC
Confidence            9999999999999999999999999854 55                       7777776 6788999999876543

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.91  E-value=5.1e-24  Score=185.86  Aligned_cols=137  Identities=29%  Similarity=0.477  Sum_probs=122.2

Q ss_pred             CCCcEEEEECCCCCccCCC--CceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYG--QQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g--~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +||+.++|+|+++++++.+  +.|||+++|+.++.|||+++.   ..+ .+|||+|||++++++||++++.||.||+||+
T Consensus       362 ~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~  437 (539)
T PRK07008        362 IYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPL-VDGWFPTGDVATIDADGFMQITDRSKDVIKS  437 (539)
T ss_pred             ccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhcCChh---hhh-cCCCcccCceEEEcCCCcEEEeecccCEEEe
Confidence            4789999999999888754  579999999999999999883   233 3689999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY  158 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  158 (165)
                      +|.+|+|.+||+.|..+|.|.+++                       +++.+++..++.++++++..++...+.++++++
T Consensus       438 ~G~~v~p~eIE~~l~~~p~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  494 (539)
T PRK07008        438 GGEWISSIDIENVAVAHPAVAEAA-----------------------CIACAHPKWDERPLLVVVKRPGAEVTREELLAF  494 (539)
T ss_pred             CCeEEcHHHHHHHHHhCCceeEEE-----------------------EEecCCchhccceEEEEEeCCCCccCHHHHHHH
Confidence            999999999999999999999998                       899998888889999988877666788899999


Q ss_pred             HHhhhc
Q psy7295         159 FKGKAI  164 (165)
Q Consensus       159 l~~~l~  164 (165)
                      ++++|.
T Consensus       495 ~~~~l~  500 (539)
T PRK07008        495 YEGKVA  500 (539)
T ss_pred             HHhhcc
Confidence            988764

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.91  E-value=6.4e-24  Score=182.67  Aligned_cols=116  Identities=27%  Similarity=0.410  Sum_probs=105.2

Q ss_pred             CCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcEEEChHHHHHHHhcCCCh
Q psy7295          19 GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDI   98 (165)
Q Consensus        19 g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~~~eIE~~l~~~~~v   98 (165)
                      |+.|||+++||.++.|||+++.      ..++||+|||++++|+||++++.||.||+||++|++|+|.+||+.|.+||+|
T Consensus       299 g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V  372 (452)
T PRK07445        299 NQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLV  372 (452)
T ss_pred             CCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCc
Confidence            7889999999999999998642      2578999999999999999999999999999999999999999999999999


Q ss_pred             HHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhhc
Q psy7295          99 LEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI  164 (165)
Q Consensus        99 ~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~l~  164 (165)
                      .+|+                       |++.+++..++.++++++..++ ..+.++++++|+++|.
T Consensus       373 ~~a~-----------------------V~g~~~~~~g~~~~a~vv~~~~-~~~~~~l~~~~~~~L~  414 (452)
T PRK07445        373 QDVC-----------------------VLGLPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQLS  414 (452)
T ss_pred             ceEE-----------------------EEeccCcCCCcEEEEEEEeCCC-CCCHHHHHHHHHHhCC
Confidence            9998                       9999999889999999987654 4567899999988764

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.91  E-value=9.3e-24  Score=181.22  Aligned_cols=140  Identities=39%  Similarity=0.699  Sum_probs=129.1

Q ss_pred             CCCcEEEEECCCCCccCC--CCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVVDSDNRMVPY--GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~--g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +|++.++|+|+++++++.  |+.|||+++|+.++.+|+++++.+.+.| .++||+|||+++++++|.+++.||.+|++|+
T Consensus       345 ~~~~~~~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~  423 (521)
T PRK06187        345 LPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDVIIS  423 (521)
T ss_pred             cCCeEEEEECCCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecccceEEc
Confidence            478899999999999999  9999999999999999999999998888 4679999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY  158 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  158 (165)
                      +|.+++|.+||+.|.++++|.+++                       +++.+++..++.+++++++.++...+..+++++
T Consensus       424 ~G~~v~~~~IE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  480 (521)
T PRK06187        424 GGENIYPRELEDALYGHPAVAEVA-----------------------VIGVPDEKWGERPVAVVVLKPGATLDAKELRAF  480 (521)
T ss_pred             CCeEECHHHHHHHHHhCCCceEEE-----------------------EEeccCCCcCceEEEEEEECCCCCCCHHHHHHH
Confidence            999999999999999999999998                       888888888899999999887776788899999


Q ss_pred             HHhhhc
Q psy7295         159 FKGKAI  164 (165)
Q Consensus       159 l~~~l~  164 (165)
                      ++++|.
T Consensus       481 l~~~l~  486 (521)
T PRK06187        481 LRGRLA  486 (521)
T ss_pred             HHHhcc
Confidence            987663

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.91  E-value=7.7e-24  Score=185.14  Aligned_cols=139  Identities=39%  Similarity=0.657  Sum_probs=125.4

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|++.++|+|++|++++.|+.|||+++|+.++.||+++++.+.+.| .++||+|||+++++++|.++++||.+|+|+++|
T Consensus       384 ~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G  462 (560)
T PRK08974        384 VPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSG  462 (560)
T ss_pred             cCCCEEEEECCCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCC
Confidence            4789999999999999999999999999999999999999998888 689999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      .+++|.+||+.|.++|+|.+++                       +++.+++..++.++++++..+ ...+.+++++++.
T Consensus       463 ~~i~~~~IE~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~~~v~~~~-~~~~~~~l~~~l~  518 (560)
T PRK08974        463 FNVYPNEIEDVVMLHPKVLEVA-----------------------AVGVPSEVSGEAVKIFVVKKD-PSLTEEELITHCR  518 (560)
T ss_pred             EEECHHHHHHHHHhCCCeeEEE-----------------------EEeeecCCcceEEEEEEECCC-CCCCHHHHHHHHH
Confidence            9999999999999999999998                       888888888888888877543 3456778888888


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       519 ~~l~  522 (560)
T PRK08974        519 RHLT  522 (560)
T ss_pred             hhcc
Confidence            7653

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.91  E-value=9e-24  Score=184.04  Aligned_cols=140  Identities=36%  Similarity=0.555  Sum_probs=124.9

Q ss_pred             CCCcEEEEE--CCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVV--DSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vv--d~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +|++.++|+  |+++++++.|+.|||+++|+.++.|||++++.+.+.|. ++||+|||+++++++|+++++||.||+||+
T Consensus       371 ~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~  449 (541)
T TIGR03205       371 LPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV-GDRFLTGDIGYMDTDGYFFLVDRKKDMIIS  449 (541)
T ss_pred             ccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhc-cCCcccCceEEEcCCceEEEEccccCeEEE
Confidence            357777775  56689999999999999999999999999999988884 689999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCC-CCCHHHHHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENS-SLTEDELRG  157 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~-~~~~~~l~~  157 (165)
                      +|.+|+|.+||+.+.++++|.+++                       |++.+++..++.+++++++.++. ..+.+++.+
T Consensus       450 ~G~~i~~~eIE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  506 (541)
T TIGR03205       450 GGFNVYPQMIEQAIYEHPGVQEVI-----------------------VIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRA  506 (541)
T ss_pred             CCEEECHHHHHHHHHhCCCeeeEE-----------------------EEecCCcccCceEEEEEEECCCCCcCCHHHHHH
Confidence            999999999999999999999998                       99998888888999999887653 356788999


Q ss_pred             HHHhhhc
Q psy7295         158 YFKGKAI  164 (165)
Q Consensus       158 ~l~~~l~  164 (165)
                      +++++|.
T Consensus       507 ~~~~~l~  513 (541)
T TIGR03205       507 FLAGKLG  513 (541)
T ss_pred             HHHhhcc
Confidence            9988764

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.91  E-value=1.2e-23  Score=181.89  Aligned_cols=138  Identities=30%  Similarity=0.519  Sum_probs=122.5

Q ss_pred             CCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCC-CeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           2 SLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED-NWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         2 pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~-~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      |+ .++++|++|.+++.|+.|||+++|+ ++.+||++++.+...+..+ +||+|||+++++++|.+++.||.||++|++|
T Consensus       335 ~g-~~~i~d~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G  412 (511)
T PRK13391        335 FG-DLHILDDDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGG  412 (511)
T ss_pred             cc-eEEEECCCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCC
Confidence            45 5889999999999999999999999 8899999999998888654 9999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCC---CHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSL---TEDELRG  157 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~---~~~~l~~  157 (165)
                      .+|+|.+||+.|.+||.|.+++                       +++.+++..++.+++++++.++...   ..+++++
T Consensus       413 ~~v~~~eie~~l~~~~~v~~~~-----------------------v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  469 (511)
T PRK13391        413 VNIYPQEAENLLITHPKVADAA-----------------------VFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIA  469 (511)
T ss_pred             EEECHHHHHHHHHhCCCcceEE-----------------------EEecCCcccCceeEEEEEECCCCCcccchHHHHHH
Confidence            9999999999999999999998                       8898888888999999887654322   2477888


Q ss_pred             HHHhhhc
Q psy7295         158 YFKGKAI  164 (165)
Q Consensus       158 ~l~~~l~  164 (165)
                      +|+++|.
T Consensus       470 ~~~~~l~  476 (511)
T PRK13391        470 FCRQRLS  476 (511)
T ss_pred             HHHhhcc
Confidence            8887653

>PLN02479 acetate-CoA ligase

Probab=99.91  E-value=6.5e-24  Score=186.37  Aligned_cols=134  Identities=34%  Similarity=0.544  Sum_probs=118.0

Q ss_pred             EEEECC-CCCccCCC--CceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcEE
Q psy7295           6 VKVVDS-DNRMVPYG--QQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGEN   82 (165)
Q Consensus         6 v~vvd~-~g~~~~~g--~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~   82 (165)
                      ++|+|+ .+++++.+  ++|||+++|++++.|||++++.|.+.| .++||+|||+++++++|++++.||.||+||++|++
T Consensus       384 ~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~  462 (567)
T PLN02479        384 LDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGEN  462 (567)
T ss_pred             eeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEE
Confidence            788885 48888764  679999999999999999999999988 57899999999999999999999999999999999


Q ss_pred             EChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC-----CCHHHHHH
Q psy7295          83 IYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS-----LTEDELRG  157 (165)
Q Consensus        83 v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~-----~~~~~l~~  157 (165)
                      |+|.+||+.|.+||.|.+++                       |++.++...++.+++++++..+..     ...+++.+
T Consensus       463 v~~~eIE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~  519 (567)
T PLN02479        463 ISSLEVENVVYTHPAVLEAS-----------------------VVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMK  519 (567)
T ss_pred             EcHHHHHHHHHhCcccceee-----------------------EEeccchhcCceeEEEEEecCcccccchhhhHHHHHH
Confidence            99999999999999999998                       888888777889999999876532     23467788


Q ss_pred             HHHhhh
Q psy7295         158 YFKGKA  163 (165)
Q Consensus       158 ~l~~~l  163 (165)
                      +++++|
T Consensus       520 ~~~~~l  525 (567)
T PLN02479        520 FCRERL  525 (567)
T ss_pred             HHHhhc
Confidence            887765

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.91  E-value=1.3e-23  Score=182.70  Aligned_cols=136  Identities=37%  Similarity=0.527  Sum_probs=122.1

Q ss_pred             EEEEECC-CCCccCCC--CceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcE
Q psy7295           5 IVKVVDS-DNRMVPYG--QQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE   81 (165)
Q Consensus         5 ~v~vvd~-~g~~~~~g--~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~   81 (165)
                      .++|+|+ ++.+++.+  +.|||+++|+.++.|||++++.+...| .++||+|||++++|++|++++.||.||++|++|.
T Consensus       369 ~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~  447 (545)
T PRK08162        369 GVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGE  447 (545)
T ss_pred             eEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCE
Confidence            5788886 47888763  469999999999999999999999888 5789999999999999999999999999999999


Q ss_pred             EEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q psy7295          82 NIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG  161 (165)
Q Consensus        82 ~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  161 (165)
                      +|+|.+||+.|.++|+|.+++                       |++.+++..++.+++++++.++...+.++++++|++
T Consensus       448 ~v~~~eIE~~l~~~~~v~~~~-----------------------vv~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~  504 (545)
T PRK08162        448 NISSIEVEDVLYRHPAVLVAA-----------------------VVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCRE  504 (545)
T ss_pred             EECHHHHHHHHHhCCcccEEE-----------------------EEeeeccccCceEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            999999999999999999998                       888888777889999999887666788899999988


Q ss_pred             hhc
Q psy7295         162 KAI  164 (165)
Q Consensus       162 ~l~  164 (165)
                      +|.
T Consensus       505 ~l~  507 (545)
T PRK08162        505 HLA  507 (545)
T ss_pred             hcc
Confidence            663

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.91  E-value=1.8e-23  Score=180.52  Aligned_cols=140  Identities=33%  Similarity=0.502  Sum_probs=125.2

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +||+.++++|+++.+++.|+.|||+++|+.++.+|+++++.+...| .++||+|||+++++++|.+++.||.+|+++++|
T Consensus       336 ~~g~~v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G  414 (508)
T TIGR02262       336 VPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSG  414 (508)
T ss_pred             CCCcEEEEECCCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeeeCC
Confidence            4688999999889999999999999999999999999999998888 578999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC---CCHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS---LTEDELRG  157 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~---~~~~~l~~  157 (165)
                      .+++|.+||+.|.++++|.+++                       +++.+++...+.+.+++++.++..   ...+++.+
T Consensus       415 ~~v~~~~ie~~l~~~~~v~~~~-----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~  471 (508)
T TIGR02262       415 IYVSPFEIESALIQHPAVLEAA-----------------------VVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKE  471 (508)
T ss_pred             EEECHHHHHHHHHhCCCeeEEE-----------------------EEeccccCCCceeEEEEEeCCCCccccccHHHHHH
Confidence            9999999999999999999998                       888877777788889988766542   23577888


Q ss_pred             HHHhhhc
Q psy7295         158 YFKGKAI  164 (165)
Q Consensus       158 ~l~~~l~  164 (165)
                      +++++|.
T Consensus       472 ~~~~~l~  478 (508)
T TIGR02262       472 HVKDRLA  478 (508)
T ss_pred             HHHHhcc
Confidence            8887753

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.91  E-value=1.1e-23  Score=185.19  Aligned_cols=139  Identities=27%  Similarity=0.503  Sum_probs=121.6

Q ss_pred             CCcEEEEECCCCCccC--CCCceEEEEEeCcccccccCChhhh----------------hhhhcCCCeEeeccEEEEecC
Q psy7295           2 SLNIVKVVDSDNRMVP--YGQQGELLIRGYCNMLRYWGNEEKT----------------KEILGEDNWLRTGDQFVLTKD   63 (165)
Q Consensus         2 pg~~v~vvd~~g~~~~--~g~~GeL~v~g~~~~~gY~~~~~~t----------------~~~~~~~~~~~TGD~~~~~~d   63 (165)
                      ++++++++|+ |.+++  .+..|||+++|+.++.|||++++.+                ...|..++||+|||++++++|
T Consensus       365 ~~~~~~i~~~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~d  443 (576)
T PRK05620        365 ASLEYRIVND-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRD  443 (576)
T ss_pred             CceeEEEecC-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCC
Confidence            6788999987 77664  4788999999999999999999887                233445789999999999999


Q ss_pred             CcEEEecCCCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEE
Q psy7295          64 GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIR  143 (165)
Q Consensus        64 G~l~~~GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~  143 (165)
                      |.+++.||.+|+||++|.+|+|.+||+.|.+||.|.+++                       |++.+++..++.++++++
T Consensus       444 g~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~-----------------------vv~~~~~~~g~~~~a~v~  500 (576)
T PRK05620        444 GFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECA-----------------------VIGYPDDKWGERPLAVTV  500 (576)
T ss_pred             ceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEE-----------------------EEeccCCCcCceeEEEEE
Confidence            999999999999999999999999999999999999998                       999999888899999998


Q ss_pred             eCCCCC---CCHHHHHHHHHhhhc
Q psy7295         144 LTENSS---LTEDELRGYFKGKAI  164 (165)
Q Consensus       144 ~~~~~~---~~~~~l~~~l~~~l~  164 (165)
                      +.++..   .+.++++++|+++|.
T Consensus       501 ~~~~~~~~~~~~~~l~~~l~~~L~  524 (576)
T PRK05620        501 LAPGIEPTRETAERLRDQLRDRLP  524 (576)
T ss_pred             ecCCCCcccccHHHHHHHHHhhCc
Confidence            876543   346889999988764

>PRK12467 peptide synthase; Provisional

Probab=99.90  E-value=1.3e-23  Score=215.18  Aligned_cols=139  Identities=24%  Similarity=0.244  Sum_probs=121.8

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhc-------CCCeEeeccEEEEecCCcEEEecCCC
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG-------EDNWLRTGDQFVLTKDGFGSVVGRIK   73 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~-------~~~~~~TGD~~~~~~dG~l~~~GR~d   73 (165)
                      ++|+.++|+|++++++|.|.+|||+|+|+++++||+++|+.|++.|.       +++||+|||++++++||.|+|+||.|
T Consensus      1898 ~~~~~~~vld~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D 1977 (3956)
T PRK12467       1898 IANLSTYILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRID 1977 (3956)
T ss_pred             cCCCEEEEECCCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccC
Confidence            57899999999999999999999999999999999999999999983       34699999999999999999999999


Q ss_pred             ceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCC---
Q psy7295          74 DLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSL---  150 (165)
Q Consensus        74 d~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~---  150 (165)
                      ++||++|++|+|.|||+.|.++|+|.+|+                       |++.+ ...++.++++++.......   
T Consensus      1978 ~qVki~G~rIel~eIE~~l~~~p~V~~a~-----------------------vv~~~-~~~~~~lva~vv~~~~~~~~~~ 2033 (3956)
T PRK12467       1978 HQVKIRGFRIELGEIEARLREQGGVREAV-----------------------VIAQD-GANGKQLVAYVVPTDPGLVDDD 2033 (3956)
T ss_pred             ceEEeCeEEechHHHHHHHHhCCCcceEE-----------------------EEEec-CCCCcEEEEEEEecCccccccc
Confidence            99999999999999999999999999998                       77765 4466789999987543221   


Q ss_pred             -----CHHHHHHHHHhhh
Q psy7295         151 -----TEDELRGYFKGKA  163 (165)
Q Consensus       151 -----~~~~l~~~l~~~l  163 (165)
                           ..++++++++++|
T Consensus      2034 ~~~~~~~~~l~~~l~~~L 2051 (3956)
T PRK12467       2034 EAQVALRAILKNHLKASL 2051 (3956)
T ss_pred             ccccccHHHHHHHHHhhC
Confidence                 3467888887765

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.90  E-value=1.1e-23  Score=189.18  Aligned_cols=119  Identities=25%  Similarity=0.414  Sum_probs=104.4

Q ss_pred             CCCcEEEEECC--CC-CccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295           1 MSLNIVKVVDS--DN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLII   77 (165)
Q Consensus         1 ~pg~~v~vvd~--~g-~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~   77 (165)
                      +|+++++++|.  .| .+++.+..|||+|+||+++.|||++|+.|++.| .+|||+|||+|++|+||+|+|.||.+|+||
T Consensus       442 ~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~TGDig~~d~dG~l~i~gR~kd~ik  520 (660)
T PLN02430        442 AVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLKIIDRKKNLIK  520 (660)
T ss_pred             CCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccceeccceEEECCCCcEEEEEcccccEE
Confidence            47889999862  24 456666789999999999999999999999998 689999999999999999999999999999


Q ss_pred             E-CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCC
Q psy7295          78 R-GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTE  146 (165)
Q Consensus        78 ~-~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~  146 (165)
                      . +|++|+|.+||+.|.+||.|.+++                       |++.   ..++.++|+|++++
T Consensus       521 ~~~G~~V~p~~IE~~l~~~p~V~~~~-----------------------V~G~---~~~~~~~A~vv~~~  564 (660)
T PLN02430        521 LSQGEYVALEYLENVYGQNPIVEDIW-----------------------VYGD---SFKSMLVAVVVPNE  564 (660)
T ss_pred             cCCCcEEchHHHHHHHhcCCCeeEEE-----------------------EEec---CCcceEEEEEEcCH
Confidence            5 799999999999999999999998                       8773   23568889988753

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.90  E-value=3.2e-23  Score=177.66  Aligned_cols=139  Identities=25%  Similarity=0.240  Sum_probs=120.0

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC---CCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE---DNWLRTGDQFVLTKDGFGSVVGRIKDLII   77 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~---~~~~~TGD~~~~~~dG~l~~~GR~dd~i~   77 (165)
                      +|+++++|+|++|.+++.|+.|||+++|+.++.|||++++.+...|..   .+||+|||++++ ++|++++.||.||+++
T Consensus       324 ~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~  402 (503)
T PRK04813        324 KPDSPLLIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIK  402 (503)
T ss_pred             CCCCEEEEECCCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEE
Confidence            468899999999999999999999999999999999999999888733   359999999999 9999999999999999


Q ss_pred             ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC----HH
Q psy7295          78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT----ED  153 (165)
Q Consensus        78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~----~~  153 (165)
                      ++|.+++|.+||+.+.++|+|.+++                       +++.+++..++.+++++++.++....    ..
T Consensus       403 ~~G~~v~~~~iE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  459 (503)
T PRK04813        403 LNGYRIELEEIEQNLRQSSYVESAV-----------------------VVPYNKDHKVQYLIAYVVPKEEDFEREFELTK  459 (503)
T ss_pred             ECcEEeCHHHHHHHHHhCCCcceEE-----------------------EEEeeCCCCccEEEEEEEeccccccccchhHH
Confidence            9999999999999999999999998                       88877776778899998876532111    14


Q ss_pred             HHHHHHHhhh
Q psy7295         154 ELRGYFKGKA  163 (165)
Q Consensus       154 ~l~~~l~~~l  163 (165)
                      ++++++++++
T Consensus       460 ~l~~~~~~~l  469 (503)
T PRK04813        460 AIKKELKERL  469 (503)
T ss_pred             HHHHHHHhhC
Confidence            5777776654

>PRK05691 peptide synthase; Validated

Probab=99.90  E-value=1.9e-23  Score=214.99  Aligned_cols=140  Identities=22%  Similarity=0.290  Sum_probs=124.9

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC-------CCeEeeccEEEEecCCcEEEecCCC
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE-------DNWLRTGDQFVLTKDGFGSVVGRIK   73 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~-------~~~~~TGD~~~~~~dG~l~~~GR~d   73 (165)
                      +||+.++|+|++++++|.|.+|||+|+||++++||+++|+.|.+.|..       .+||+|||++++++||+++|+||+|
T Consensus      1449 ~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d 1528 (4334)
T PRK05691       1449 LGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLD 1528 (4334)
T ss_pred             eCCCEEEEECCCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccC
Confidence            478999999999999999999999999999999999999999998842       3599999999999999999999999


Q ss_pred             ceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHH
Q psy7295          74 DLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTED  153 (165)
Q Consensus        74 d~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~  153 (165)
                      ++||++|++|+|.|||+.|.++|+|.+++                       |+... +..+..++++++...+...+.+
T Consensus      1529 ~qiki~G~rie~~eIE~~l~~~~~V~~a~-----------------------v~~~~-~~~~~~lva~~~~~~~~~~~~~ 1584 (4334)
T PRK05691       1529 QQVKLRGFRVEPEEIQARLLAQPGVAQAA-----------------------VLVRE-GAAGAQLVGYYTGEAGQEAEAE 1584 (4334)
T ss_pred             cEEEECCEEcCHHHHHHHHHhCCCcceEE-----------------------EEEee-CCCCCEEEEEEEeCCCCCCCHH
Confidence            99999999999999999999999999987                       65443 3455788999988776666778


Q ss_pred             HHHHHHHhhhc
Q psy7295         154 ELRGYFKGKAI  164 (165)
Q Consensus       154 ~l~~~l~~~l~  164 (165)
                      +++++|+++|.
T Consensus      1585 ~l~~~l~~~Lp 1595 (4334)
T PRK05691       1585 RLKAALAAELP 1595 (4334)
T ss_pred             HHHHHHHHhCc
Confidence            99999988763

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.90  E-value=8.7e-24  Score=187.79  Aligned_cols=109  Identities=39%  Similarity=0.529  Sum_probs=98.0

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEE-EC
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLII-RG   79 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~-~~   79 (165)
                      +|+++++|+|          .|||+||||.+|.|||++|+.|+++|+++|||+|||+|.+|++|+|+++||++++|| .+
T Consensus       410 ~p~~evKI~d----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~  479 (613)
T COG1022         410 LPGIEVKIAD----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSN  479 (613)
T ss_pred             CCCceEEEcc----------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCC
Confidence            4677777766          599999999999999999999999999999999999999999999999999999999 69


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCC
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTE  146 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~  146 (165)
                      |++|.|..||+.+.++|-|.+++                       |++ .+   ...+.|.|+++.
T Consensus       480 GknIaP~~IE~~l~~~~~I~qi~-----------------------vvg-~~---k~~~~AlIvp~~  519 (613)
T COG1022         480 GKNIAPEPIESKLAKSPLIEQIC-----------------------VVG-DD---KKFLVALIVPDF  519 (613)
T ss_pred             CcccChHHHHHHHhcCCCeeEEE-----------------------EEe-cC---CcceEEEEeCCH
Confidence            99999999999999999999987                       887 22   247778888643

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.90  E-value=8.9e-23  Score=185.28  Aligned_cols=139  Identities=22%  Similarity=0.246  Sum_probs=114.0

Q ss_pred             CCCcEEEEECCCCCccCCCC--ceEEEEEeC--cccccccCChhhhhhhhc------CCCeEeeccEEEEecCCcEEEec
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQ--QGELLIRGY--CNMLRYWGNEEKTKEILG------EDNWLRTGDQFVLTKDGFGSVVG   70 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~--~GeL~v~g~--~~~~gY~~~~~~t~~~~~------~~~~~~TGD~~~~~~dG~l~~~G   70 (165)
                      +||++++|+|++|++++.|+  .|||+++++  ....+|+++. .+...|.      .+.||+|||++++|++|+++|+|
T Consensus       531 ~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~G  609 (728)
T PLN03052        531 AMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHG  609 (728)
T ss_pred             CCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEe
Confidence            47999999999999999985  599999865  3345677764 3344442      23499999999999999999999


Q ss_pred             CCCceEEECcEEEChHHHHHHHh-cCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCC-ceEEEEEEeC--C
Q psy7295          71 RIKDLIIRGGENIYPSEIEDFLT-THPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMG-EEIGASIRLT--E  146 (165)
Q Consensus        71 R~dd~i~~~G~~v~~~eIE~~l~-~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~a~v~~~--~  146 (165)
                      |+||+||++|+||+|.|||++|. .||.|.+++                       |++.+++..+ +.+++|++++  +
T Consensus       610 R~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaa-----------------------Vvg~~d~~~g~e~~~afVvl~~~~  666 (728)
T PLN03052        610 RADDTMNLGGIKVSSVEIERVCNAADESVLETA-----------------------AIGVPPPGGGPEQLVIAAVLKDPP  666 (728)
T ss_pred             cCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEE-----------------------EEeeecCCCCcEEEEEEEEEecCC
Confidence            99999999999999999999995 799999999                       9999988766 8899999987  5


Q ss_pred             CCCCCHHHHHHHHHhhh
Q psy7295         147 NSSLTEDELRGYFKGKA  163 (165)
Q Consensus       147 ~~~~~~~~l~~~l~~~l  163 (165)
                      +...+.++|++++++.+
T Consensus       667 g~~~~~~~L~~~i~~~i  683 (728)
T PLN03052        667 GSNPDLNELKKIFNSAI  683 (728)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            55556677777665443

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.90  E-value=9.1e-23  Score=177.93  Aligned_cols=138  Identities=28%  Similarity=0.438  Sum_probs=122.6

Q ss_pred             CCCcEEEEECCCCCccCCC--CceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYG--QQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g--~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +||++++|+|++|.+++.+  ..|||+++|+.++.|||++   +...+..++||+|||+++++++|++++.||.+|++++
T Consensus       362 ~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~  438 (542)
T PRK06018        362 PFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKS  438 (542)
T ss_pred             CCCcEEEEECCCCCCCCCCCCceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEE
Confidence            3678999999999888764  6799999999999999984   2344556899999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY  158 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  158 (165)
                      +|.+|+|.+||+.+.++|+|.+++                       |++.+++..++.+.+++++.++...+.+++.++
T Consensus       439 ~G~~v~~~eIE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  495 (542)
T PRK06018        439 GGEWISSIDLENLAVGHPKVAEAA-----------------------VIGVYHPKWDERPLLIVQLKPGETATREEILKY  495 (542)
T ss_pred             CCEEECHHHHHHHHHhCCcceeEE-----------------------EEeccCCCcCceeEEEEEeCCCCCCCHHHHHHH
Confidence            999999999999999999999998                       999988888889999999887777788899999


Q ss_pred             HHhhhc
Q psy7295         159 FKGKAI  164 (165)
Q Consensus       159 l~~~l~  164 (165)
                      +++++.
T Consensus       496 ~~~~l~  501 (542)
T PRK06018        496 MDGKIA  501 (542)
T ss_pred             HHhhCc
Confidence            988764

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.90  E-value=7.5e-23  Score=169.89  Aligned_cols=117  Identities=28%  Similarity=0.462  Sum_probs=106.1

Q ss_pred             eEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcEEEChHHHHHHHhcCCChHHh
Q psy7295          22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA  101 (165)
Q Consensus        22 GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a  101 (165)
                      |+|+++|+.++.||++++..+  .|..++||+|||++++ ++|.+++.||.||+||++|++|+|.+||+.|.+||+|.++
T Consensus       208 Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~  284 (358)
T PRK07824        208 GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADC  284 (358)
T ss_pred             CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceE
Confidence            899999999999999988643  4556789999999999 8999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhhc
Q psy7295         102 YVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI  164 (165)
Q Consensus       102 ~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~l~  164 (165)
                      +                       |++.+++..++.++++++...+...+.++++++++++|.
T Consensus       285 ~-----------------------vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~  324 (358)
T PRK07824        285 A-----------------------VFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLD  324 (358)
T ss_pred             E-----------------------EEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhhCc
Confidence            8                       999999888999999998776666788999999988764

>PRK05691 peptide synthase; Validated

Probab=99.89  E-value=5.3e-23  Score=211.80  Aligned_cols=139  Identities=27%  Similarity=0.362  Sum_probs=120.7

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC-------CCeEeeccEEEEecCCcEEEecCCC
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE-------DNWLRTGDQFVLTKDGFGSVVGRIK   73 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~-------~~~~~TGD~~~~~~dG~l~~~GR~d   73 (165)
                      ++++.++|+|++++++|.|++|||+|+|+++++||+++|+.|++.|..       ++||+|||++++++||+++|+||.|
T Consensus      2512 i~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~t~~~F~~~p~~~~~~r~y~TGDl~~~~~dG~l~~~GR~d 2591 (4334)
T PRK05691       2512 VGARVAYILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRID 2591 (4334)
T ss_pred             cCCCEEEEECCCCCCCCCCCceEEEecccccCccccCChhhhhhhccCCCCCCCCCceEeccceEEEcCCCCEEEeeccc
Confidence            467889999999999999999999999999999999999999999843       3699999999999999999999999


Q ss_pred             ceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCC------
Q psy7295          74 DLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTEN------  147 (165)
Q Consensus        74 d~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~------  147 (165)
                      ++||++|++|+|.|||+.|.+||+|.+|+                       |++.. ...++.++++++....      
T Consensus      2592 ~qvki~G~rIe~~EIE~~l~~~p~V~~a~-----------------------V~~~~-~~~~~~lva~vv~~~~~~~~~~ 2647 (4334)
T PRK05691       2592 HQVKIRGFRIELGEIESRLLEHPAVREAV-----------------------VLALD-TPSGKQLAGYLVSAVAGQDDEA 2647 (4334)
T ss_pred             CeEEeeeEEechHHHHHHHHhCCCcceEE-----------------------EEEee-CCCCcEEEEEEEeccccccccc
Confidence            99999999999999999999999999998                       77664 3456788888886321      


Q ss_pred             CCCCHHHHHHHHHhhh
Q psy7295         148 SSLTEDELRGYFKGKA  163 (165)
Q Consensus       148 ~~~~~~~l~~~l~~~l  163 (165)
                      .....++++++++++|
T Consensus      2648 ~~~~~~~l~~~l~~~L 2663 (4334)
T PRK05691       2648 QAALREALKAHLKQQL 2663 (4334)
T ss_pred             ccccHHHHHHHHHhhC
Confidence            1223577888888776

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.89  E-value=8e-23  Score=184.57  Aligned_cols=132  Identities=20%  Similarity=0.223  Sum_probs=110.8

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccC--Chhh-------hhhhhcCCCeEeeccEEEEecCCcEEEecC
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWG--NEEK-------TKEILGEDNWLRTGDQFVLTKDGFGSVVGR   71 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~--~~~~-------t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR   71 (165)
                      +||++++++|++|.    ++.|||+++|+.++.|||+  +++.       +...+..+|||+|||++++|+||++++.||
T Consensus       537 ~pg~~~~i~d~~~~----~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR  612 (718)
T PRK08043        537 LPGMDARLLSVPGI----EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGR  612 (718)
T ss_pred             CCCCeeEEecCCCC----CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEec
Confidence            57899999987763    5679999999999999998  3442       222233579999999999999999999999


Q ss_pred             CCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC
Q psy7295          72 IKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT  151 (165)
Q Consensus        72 ~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~  151 (165)
                      .||+||++|++|+|.|||+.|.+++.+.+++                       |++.+++..++.+++++.   +...+
T Consensus       613 ~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~a-----------------------vv~~~~~~~ge~~v~~~~---~~~~~  666 (718)
T PRK08043        613 AKRFAKIAGEMVSLEMVEQLALGVSPDKQHA-----------------------TAIKSDASKGEALVLFTT---DSELT  666 (718)
T ss_pred             CCCeeEeCcEEcCHHHHHHHHHhCCccceEE-----------------------EEEccCCCCCceEEEEEc---CcccC
Confidence            9999999999999999999999998888877                       778888888888887764   33467


Q ss_pred             HHHHHHHHHhh
Q psy7295         152 EDELRGYFKGK  162 (165)
Q Consensus       152 ~~~l~~~l~~~  162 (165)
                      .+++.++++++
T Consensus       667 ~~~l~~~~~~~  677 (718)
T PRK08043        667 REKLQQYAREH  677 (718)
T ss_pred             HHHHHHHHHhc
Confidence            78899999876

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.89  E-value=2.9e-22  Score=172.69  Aligned_cols=139  Identities=32%  Similarity=0.439  Sum_probs=124.3

Q ss_pred             CCcEEEEECCCCCccCCCCc--eEEEEEeCcccccccCChhhhhhhhcC---CCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295           2 SLNIVKVVDSDNRMVPYGQQ--GELLIRGYCNMLRYWGNEEKTKEILGE---DNWLRTGDQFVLTKDGFGSVVGRIKDLI   76 (165)
Q Consensus         2 pg~~v~vvd~~g~~~~~g~~--GeL~v~g~~~~~gY~~~~~~t~~~~~~---~~~~~TGD~~~~~~dG~l~~~GR~dd~i   76 (165)
                      |+..++|+|++|++++.|+.  |+|+ +++.++.|||+++..+.+.|..   .+||+|||+++++++|++++.||.|+++
T Consensus       356 ~~~~~~i~~~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i  434 (533)
T PRK07798        356 IGPRTVVLDEDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCI  434 (533)
T ss_pred             CCceEEEECCCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceE
Confidence            67889999999999999988  6665 5678999999999999888743   4699999999999999999999999999


Q ss_pred             EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHH
Q psy7295          77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR  156 (165)
Q Consensus        77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~  156 (165)
                      |++|.+|+|.+||+.|.++|.|.+++                       +++.+++..++.+.+++++.++...+.++++
T Consensus       435 ~~~G~~v~~~eIE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  491 (533)
T PRK07798        435 NTGGEKVFPEEVEEALKAHPDVADAL-----------------------VVGVPDERWGQEVVAVVQLREGARPDLAELR  491 (533)
T ss_pred             ecCCEEeCHHHHHHHHHhCccceeEE-----------------------EEeccCcccCceEEEEEEECCCCCCCHHHHH
Confidence            99999999999999999999999998                       8898888888899999998876667889999


Q ss_pred             HHHHhhhc
Q psy7295         157 GYFKGKAI  164 (165)
Q Consensus       157 ~~l~~~l~  164 (165)
                      ++++++|.
T Consensus       492 ~~l~~~l~  499 (533)
T PRK07798        492 AHCRSSLA  499 (533)
T ss_pred             HHHhhhcc
Confidence            99988763

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.89  E-value=1e-22  Score=173.96  Aligned_cols=116  Identities=26%  Similarity=0.501  Sum_probs=105.0

Q ss_pred             eEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcEEEChHHHHHHHhcCCChHHh
Q psy7295          22 GELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEA  101 (165)
Q Consensus        22 GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a  101 (165)
                      |||+++|+.++.|||++++.+.... .++||+|||+++++ +|++++.||.||+||++|.+|+|.+||+.|.++|+|.++
T Consensus       305 gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~  382 (458)
T PRK09029        305 GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQV  382 (458)
T ss_pred             CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceE
Confidence            8999999999999999988775443 57999999999999 999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhhc
Q psy7295         102 YVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI  164 (165)
Q Consensus       102 ~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~l~  164 (165)
                      +                       |++.+++..++.+++++++..  ..+.++++++|+++|.
T Consensus       383 ~-----------------------v~~~~~~~~~~~~~a~v~~~~--~~~~~~l~~~~~~~l~  420 (458)
T PRK09029        383 F-----------------------VVPVADAEFGQRPVAVVESDS--EAAVVNLAEWLQDKLA  420 (458)
T ss_pred             E-----------------------EEccCCcccCceEEEEEEcCc--ccCHHHHHHHHHhhch
Confidence            8                       999999888999999998753  3577899999988764

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.89  E-value=2.1e-22  Score=177.70  Aligned_cols=127  Identities=26%  Similarity=0.342  Sum_probs=108.8

Q ss_pred             CccCCCCceEEE--EEeCcccccccCChhhhhhhhc------CCCeEeeccEEEEecCCcEEEecCCCceEEECcEEECh
Q psy7295          14 RMVPYGQQGELL--IRGYCNMLRYWGNEEKTKEILG------EDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYP   85 (165)
Q Consensus        14 ~~~~~g~~GeL~--v~g~~~~~gY~~~~~~t~~~~~------~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~~   85 (165)
                      .+++.|+.|||+  ++++.++.|| +++..+.+.|.      .++||+|||+|++++||.+++.||.||+||++|++|+|
T Consensus       396 ~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p  474 (600)
T PRK08279        396 IKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVAT  474 (600)
T ss_pred             ccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCH
Confidence            357889999998  7799999999 88888877762      35899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCC-CCceEEEEEEeCCCCCCCHHHHHHHHHhhhc
Q psy7295          86 SEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDER-MGEEIGASIRLTENSSLTEDELRGYFKGKAI  164 (165)
Q Consensus        86 ~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~a~v~~~~~~~~~~~~l~~~l~~~l~  164 (165)
                      .|||+.|.+||+|.+|+                       |++.+++. .+....+++++.++...+.++++++|+++|.
T Consensus       475 ~eIE~~l~~~p~V~~a~-----------------------v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~  531 (600)
T PRK08279        475 TEVENALSGFPGVEEAV-----------------------VYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLP  531 (600)
T ss_pred             HHHHHHHhcCCCcceEE-----------------------EEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHhhCc
Confidence            99999999999999998                       88887654 3445566666665556788999999998764

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.89  E-value=4.4e-23  Score=183.10  Aligned_cols=130  Identities=22%  Similarity=0.291  Sum_probs=108.2

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEE----ecCCcEEEecCCCceE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL----TKDGFGSVVGRIKDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~----~~dG~l~~~GR~dd~i   76 (165)
                      +||++++++|+       +..|||+++||.++.|||++|+.|.+.|..+|||+|||+|++    |++|+++|+||.||+|
T Consensus       398 ~pg~~v~i~d~-------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i  470 (614)
T PRK08180        398 APGCEVKLVPV-------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDF  470 (614)
T ss_pred             cCCcEEEEecC-------CCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhE
Confidence            46888888875       446999999999999999999999999988899999999999    4689999999999988


Q ss_pred             E-ECcEEEC--hHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCC-----
Q psy7295          77 I-RGGENIY--PSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENS-----  148 (165)
Q Consensus        77 ~-~~G~~v~--~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~-----  148 (165)
                      | .+|++|+  |.|+|..+.+||.|.+++                       |++.+++    .+.++|+++++.     
T Consensus       471 ~~~~G~~i~~~p~Eie~~l~~~p~V~~a~-----------------------V~g~~~~----~~~a~V~~~~~~~~~~~  523 (614)
T PRK08180        471 KLSSGTWVSVGPLRARAVSAGAPLVQDVV-----------------------ITGHDRD----EIGLLVFPNLDACRRLA  523 (614)
T ss_pred             EcCCCcEecchhhhHHHHhhcCchhheEE-----------------------EEcCCCC----ceEEEEEcCHHHHHHHH
Confidence            8 5798766  788899999999999998                       8988765    577888876431     


Q ss_pred             ----------CCCHHHHHHHHHhhhc
Q psy7295         149 ----------SLTEDELRGYFKGKAI  164 (165)
Q Consensus       149 ----------~~~~~~l~~~l~~~l~  164 (165)
                                ..+.++++++|+++|.
T Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~l~  549 (614)
T PRK08180        524 GLLADASLAEVLAHPAVRAAFRERLA  549 (614)
T ss_pred             hhcccCCHHHHhcCHHHHHHHHHHHH
Confidence                      1244678888877653

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.88  E-value=4.3e-22  Score=173.42  Aligned_cols=101  Identities=33%  Similarity=0.459  Sum_probs=92.3

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|++|++++.|+.|||+++|+.++.||++++... ..+..++||+|||+++++++|+++++||.||+||++|
T Consensus       366 ~~g~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~-~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G  444 (545)
T PRK07768        366 LPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFI-PAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAG  444 (545)
T ss_pred             CCCCEEEEECCCCCCCCCCCEEEEEEccCcccccccCCCCCc-ccccCCCeeeccceEEEecCCEEEEEccccceEEECC
Confidence            478999999999999999999999999999999999865443 3334678999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAY  102 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~  102 (165)
                      .+|+|.+||+.|.++|+|.+++
T Consensus       445 ~~v~~~eiE~~l~~~~~v~~~~  466 (545)
T PRK07768        445 RNIYPTDIERAAARVEGVRPGN  466 (545)
T ss_pred             EecCHHHHHHHHHhCcccccce
Confidence            9999999999999999999987

>KOG1256|consensus

Probab=99.88  E-value=6.3e-23  Score=182.14  Aligned_cols=120  Identities=28%  Similarity=0.392  Sum_probs=105.4

Q ss_pred             CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEE-E
Q psy7295           1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLII-R   78 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~-~   78 (165)
                      +|+++++++|.. -+.-+.|..|||||+|+.++.|||++|+.|+++|+++||++|||+|+++++|.|.+.||+++++| .
T Consensus       477 ~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifkla  556 (691)
T KOG1256|consen  477 VPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLA  556 (691)
T ss_pred             ccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcC
Confidence            589999999864 34445566899999999999999999999999999999999999999999999999999999999 6


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCC
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTE  146 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~  146 (165)
                      +|++|.|..||++..+.+.|.+.+                       |.+-..   ...++++|++++
T Consensus       557 qGEyVaPe~IEniy~~~~~V~qi~-----------------------V~g~s~---~~~LvaiVvpd~  598 (691)
T KOG1256|consen  557 QGEYVAPEKIENIYKRSLPVQQIF-----------------------VLGDSL---RSFLVAIVVPDP  598 (691)
T ss_pred             CCCccChHHHHHHHhcCCceEEEE-----------------------EECCcc---hhcEEEEEecCh
Confidence            999999999999999999999977                       666432   246778887754

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.88  E-value=7.3e-22  Score=184.42  Aligned_cols=123  Identities=20%  Similarity=0.275  Sum_probs=104.9

Q ss_pred             CCCC--CccCCCCceEEEEEeCcccccccCChhhh--hhhhc-CCCeEeeccEEEEecCCcEEEecCCCceEEECcEEEC
Q psy7295          10 DSDN--RMVPYGQQGELLIRGYCNMLRYWGNEEKT--KEILG-EDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIY   84 (165)
Q Consensus        10 d~~g--~~~~~g~~GeL~v~g~~~~~gY~~~~~~t--~~~~~-~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~   84 (165)
                      |++|  +.++.|+.|||+++++..    + +|+.+  ...|. .+|||+|||+|++|+||+|+|+||.||+||++|.+|+
T Consensus       796 d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~  870 (994)
T PRK07868        796 DDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVY  870 (994)
T ss_pred             cCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEc
Confidence            5567  678899999999999863    3 34433  22343 4799999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q psy7295          85 PSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG  161 (165)
Q Consensus        85 ~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  161 (165)
                      |.|||+.|.+||+|.+|+                       |++.+++. ++.++++|+++++...+.++|+++|++
T Consensus       871 p~EIE~~L~~hp~V~~aa-----------------------Vvg~~d~~-~~~~~a~Vv~~~~~~~~~~~L~~~l~~  923 (994)
T PRK07868        871 TEPVTDALGRIGGVDLAV-----------------------TYGVEVGG-RQLAVAAVTLRPGAAITAADLTEALAS  923 (994)
T ss_pred             HHHHHHHHhcCCCeeEEE-----------------------EEeecCCC-CceEEEEEEeCCCCcCCHHHHHHHHHh
Confidence            999999999999999998                       88988765 678899999887777888999999974

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.87  E-value=4.1e-22  Score=177.18  Aligned_cols=95  Identities=19%  Similarity=0.227  Sum_probs=84.2

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEE-e---cCCcEEEecCCCceE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL-T---KDGFGSVVGRIKDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~-~---~dG~l~~~GR~dd~i   76 (165)
                      +||++++++       +.|+.|||+++||+++.|||++|+.|.+.|..+|||+|||+|++ |   ++|+++|.||.||+|
T Consensus       410 ~pg~~v~i~-------~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i  482 (624)
T PRK12582        410 LPGVELKLA-------PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDF  482 (624)
T ss_pred             CCCcEEEEc-------cCCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhE
Confidence            356666664       45889999999999999999999999999988999999999998 4   469999999999999


Q ss_pred             E-ECcEEEChHHHH--HHHhcCCChHHhH
Q psy7295          77 I-RGGENIYPSEIE--DFLTTHPDILEAY  102 (165)
Q Consensus        77 ~-~~G~~v~~~eIE--~~l~~~~~v~~a~  102 (165)
                      | .+|++|+|.+||  ..+.+||.|.+++
T Consensus       483 ~~~~G~~i~p~~iE~e~~l~~~p~V~~a~  511 (624)
T PRK12582        483 KLSTGTWVSVGTLRPDAVAACSPVIHDAV  511 (624)
T ss_pred             ecCCCcEechHHHHHHHHHhcCcchheEE
Confidence            9 489999999885  6789999999998

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.86  E-value=3.2e-21  Score=162.81  Aligned_cols=133  Identities=35%  Similarity=0.495  Sum_probs=113.1

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|++++++.+++.     ++.|||+++|+.++.|||+++..+...+ .++||+|||++++++||.+++.||.||++|++|
T Consensus       277 ~~~~~~~i~~~~~-----~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G  350 (436)
T TIGR01923       277 LAGREIKIKVDNK-----EGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGG  350 (436)
T ss_pred             CCCcEEEEEeCCC-----CCceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEeCC
Confidence            3567777733221     3779999999999999999887776655 579999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.+++.|.+++                       +++.+++..+..+.+++.+.+  ..+..++.++++
T Consensus       351 ~~v~~~~iE~~l~~~~~v~~~~-----------------------v~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~l~  405 (436)
T TIGR01923       351 ENIYPEEIETVLYQHPGIQEAV-----------------------VVPKPDAEWGQVPVAYIVSES--DISQAKLIAYLT  405 (436)
T ss_pred             EeeCHHHHHHHHHhCCCeeEEE-----------------------EeCCcchhcCCeeEEEEEECC--CCCHHHHHHHHH
Confidence            9999999999999999999998                       888887777888889988765  367788888888


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      +.|.
T Consensus       406 ~~l~  409 (436)
T TIGR01923       406 EKLA  409 (436)
T ss_pred             Hhhh
Confidence            7663

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.86  E-value=3.6e-21  Score=180.70  Aligned_cols=132  Identities=23%  Similarity=0.251  Sum_probs=109.8

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +||+++++++..+    .++.|||+++|+.++.|||+++..+......+|||+|||++++|+||++++.||.||+||++|
T Consensus       965 ~~g~~~~~~~~~~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G 1040 (1140)
T PRK06814        965 LPGIEYRLEPVPG----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAG 1040 (1140)
T ss_pred             CCCCeEEEeecCC----CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCC
Confidence            4678888876543    367899999999999999987654322223579999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.|||+.|.+|+.+.+++                       |++.+++..++.+++++.   ....+.+++.++++
T Consensus      1041 ~~v~~~eIE~~l~~~~~v~~~~-----------------------vv~~~~~~~g~~~~~~~~---~~~~~~~~l~~~~~ 1094 (1140)
T PRK06814       1041 EMISLAAVEELAAELWPDALHA-----------------------AVSIPDARKGERIILLTT---ASDATRAAFLAHAK 1094 (1140)
T ss_pred             EEECHHHHHHHHHhcCCcccEE-----------------------EEEcccCCCCceEEEEEc---CCCcCHHHHHHHHH
Confidence            9999999999999999999988                       888888888888877654   23456788888887


Q ss_pred             hh
Q psy7295         161 GK  162 (165)
Q Consensus       161 ~~  162 (165)
                      ++
T Consensus      1095 ~~ 1096 (1140)
T PRK06814       1095 AA 1096 (1140)
T ss_pred             Hc
Confidence            64

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.86  E-value=1.7e-21  Score=162.78  Aligned_cols=102  Identities=36%  Similarity=0.405  Sum_probs=95.6

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCC------C--eEeeccEEEEecCCcEEEecCC
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED------N--WLRTGDQFVLTKDGFGSVVGRI   72 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~------~--~~~TGD~~~~~~dG~l~~~GR~   72 (165)
                      +|+++++|+|+++.+++.|+.|||+++++.++.||+++++.+.+.|...      +  ||+|||++++|++|++++.||.
T Consensus       298 ~~~~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~  377 (408)
T TIGR01733       298 LANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRI  377 (408)
T ss_pred             cCCceEEEECCCCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeecc
Confidence            4789999999999999999999999999999999999999998887432      2  9999999999999999999999


Q ss_pred             CceEEECcEEEChHHHHHHHhcCCChHHhH
Q psy7295          73 KDLIIRGGENIYPSEIEDFLTTHPDILEAY  102 (165)
Q Consensus        73 dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~  102 (165)
                      +|+++++|++++|.+||+.|.+++.|.+++
T Consensus       378 ~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~  407 (408)
T TIGR01733       378 DDQVKIRGYRIELGEIEAALLRHPGVREAV  407 (408)
T ss_pred             CCEEEeCeEEechHHHHHHHhcCcchhhhc
Confidence            999999999999999999999999999986

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>KOG1180|consensus

Probab=99.79  E-value=1.7e-19  Score=156.32  Aligned_cols=120  Identities=31%  Similarity=0.418  Sum_probs=104.1

Q ss_pred             CCCcEEEEECC-CCCccCCCC--ceEEEEEeCcccccccCChhhhhhhhcC-CC--eEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDS-DNRMVPYGQ--QGELLIRGYCNMLRYWGNEEKTKEILGE-DN--WLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~g~--~GeL~v~g~~~~~gY~~~~~~t~~~~~~-~~--~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      +|-++++++|- +|..-+.+.  .|||+|+|+.+..|||++++.|++.|.. +|  ||+|||+|.+.+||+|.+++|++|
T Consensus       460 l~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKd  539 (678)
T KOG1180|consen  460 LPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKD  539 (678)
T ss_pred             ccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhh
Confidence            35578899985 354444444  7999999999999999999999999977 78  999999999999999999999999


Q ss_pred             eEE-ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCC
Q psy7295          75 LII-RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTE  146 (165)
Q Consensus        75 ~i~-~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~  146 (165)
                      ++| .+|+.|+++-+|++++..|-|.+.+                       |++-.   ....++++|++++
T Consensus       540 LVKlq~GEYIsL~KvEa~l~s~p~V~NIC-----------------------vyAd~---~~s~~VaiVVPn~  586 (678)
T KOG1180|consen  540 LVKLQNGEYISLGKVEAALRSSPYVDNIC-----------------------VYADS---NKSKPVAIVVPNQ  586 (678)
T ss_pred             hhhhcccceeehHHHHHHHhcCcchhheE-----------------------Eeccc---ccceeEEEEcCCc
Confidence            999 6999999999999999999999976                       77643   3458889999764

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.79  E-value=2.8e-19  Score=150.20  Aligned_cols=79  Identities=35%  Similarity=0.569  Sum_probs=75.4

Q ss_pred             CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|+++++|+|++ +++++.|+.|||+++||.++.||+++++.+.+.|.++|||+|||+|++|+||+++++||.||+||++
T Consensus       338 ~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  338 LPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             STTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             ccccccccccccccccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            589999999998 9999999999999999999999999999999999776899999999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.78  E-value=3.6e-18  Score=144.52  Aligned_cols=114  Identities=25%  Similarity=0.334  Sum_probs=97.3

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|++++++.++      .++.|||++++                   .++||+|||++++++||+++++||.|+++|++|
T Consensus       267 ~~~~~~~~~~~------~~~~gel~v~~-------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G  321 (414)
T PRK08308        267 LPHVSVSAGSD------ENAPEEIVVKM-------------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSG  321 (414)
T ss_pred             CCCeEEEEecC------CCCCceEEEEc-------------------CCceEECCceEEECCCccEEEecccCCeEEECC
Confidence            35666666543      35678998864                   257999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.++|+|.+++                       |++.+++..++.+.++++...  ..+.++++++|+
T Consensus       322 ~~v~p~eIE~~l~~~~~v~~a~-----------------------v~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~l~  376 (414)
T PRK08308        322 LNVYPIEVEDVMLRLPGVQEAV-----------------------VYRGKDPVAGERVKAKVISHE--EIDPVQLREWCI  376 (414)
T ss_pred             EEECHHHHHHHHHhCCCeeEEE-----------------------EEeccCCCCCceEEEEEEeCC--CCCHHHHHHHHH
Confidence            9999999999999999999998                       888888888899999888654  467889999998


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       377 ~~l~  380 (414)
T PRK08308        377 QHLA  380 (414)
T ss_pred             HhCc
Confidence            8763

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.69  E-value=1.4e-16  Score=134.69  Aligned_cols=86  Identities=21%  Similarity=0.235  Sum_probs=79.0

Q ss_pred             CCCeEeeccEEEE-ecCCcEEEecCCCceEEECc---EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCc
Q psy7295          48 EDNWLRTGDQFVL-TKDGFGSVVGRIKDLIIRGG---ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG  123 (165)
Q Consensus        48 ~~~~~~TGD~~~~-~~dG~l~~~GR~dd~i~~~G---~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~  123 (165)
                      .+|||+|||+|++ |++|+|+|.||.+     +|   ++|+|. ||++|.+||+|.+|+                     
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaa---------------------  259 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVA---------------------  259 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEE---------------------
Confidence            6799999999998 6999999999997     88   899999 999999999999999                     


Q ss_pred             eeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhhc
Q psy7295         124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI  164 (165)
Q Consensus       124 ~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~l~  164 (165)
                        |++.+++..++.++||+++..  ..+.++++++|+++|.
T Consensus       260 --Vvgvpd~~~ge~v~A~Vv~~~--~~~~~el~~~l~~~L~  296 (365)
T PRK09188        260 --IALFSLPAKGVGLYAFVEAEL--PADEKSLRARLAGAKP  296 (365)
T ss_pred             --EEEEEcCCCCeEEEEEEEECC--CCCHHHHHHHHHhhch
Confidence              999999999999999999763  4678999999999875

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.69  E-value=4.4e-16  Score=132.68  Aligned_cols=87  Identities=25%  Similarity=0.464  Sum_probs=73.6

Q ss_pred             CcEEEEECC-CCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecC-C-----cEEEecCCCce
Q psy7295           3 LNIVKVVDS-DNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD-G-----FGSVVGRIKDL   75 (165)
Q Consensus         3 g~~v~vvd~-~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~d-G-----~l~~~GR~dd~   75 (165)
                      ...++|+|+ +|++++.|+.|||++++..            ...| ..+||+|||+++++++ |     .+++.||.||+
T Consensus       254 ~~~~eivd~~~g~~v~~Ge~Gelvvt~~~------------~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~  320 (422)
T TIGR02155       254 HFYPEIIDPHTGEVLPDGEEGELVFTTLT------------KEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDM  320 (422)
T ss_pred             eeEEEEECCCCCCCCCCCCeeEEEEecCC------------cccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCe
Confidence            456789996 6999999999999998732            2223 3579999999999875 4     47899999999


Q ss_pred             EEECcEEEChHHHHHHHhcCCChHHhH
Q psy7295          76 IIRGGENIYPSEIEDFLTTHPDILEAY  102 (165)
Q Consensus        76 i~~~G~~v~~~eIE~~l~~~~~v~~a~  102 (165)
                      |+++|.+|+|.+||+.|.++|+|...+
T Consensus       321 i~~~G~~v~p~eie~~l~~~~~v~~~~  347 (422)
T TIGR02155       321 LIIRGVNVFPTQLEEVILKMDELSPHY  347 (422)
T ss_pred             EEECCEEECHHHHHHHHHhCcCcCCCE
Confidence            999999999999999999999998555

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1179|consensus

Probab=99.62  E-value=4.6e-15  Score=129.25  Aligned_cols=133  Identities=26%  Similarity=0.334  Sum_probs=112.5

Q ss_pred             EECCCC--CccCCCCceEEE--EEeCcc---cccccCChhhhhhhh------cCCCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           8 VVDSDN--RMVPYGQQGELL--IRGYCN---MLRYWGNEEKTKEIL------GEDNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         8 vvd~~g--~~~~~g~~GeL~--v~g~~~---~~gY~~~~~~t~~~~------~~~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      |+|++|  .+|++||+|.|+  |..-..   +.||.++.+.|++..      ..|-||.|||+-..|+.|++||.+|..|
T Consensus       433 iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGD  512 (649)
T KOG1179|consen  433 IRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGD  512 (649)
T ss_pred             eecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCC
Confidence            466777  468899999776  333344   899999887776664      2456999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCC-CCceEEEEEEeCCCCCCCHH
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDER-MGEEIGASIRLTENSSLTED  153 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~a~v~~~~~~~~~~~  153 (165)
                      .+.+.|+||+..|+|+.|..+.+++|+.                       |+|+.-|. .|..-+|.|++.++.+.+.+
T Consensus       513 TFRWKGENVsTtEVe~~l~~~~~~~dv~-----------------------VYGV~VP~~EGRaGMAaI~~~p~~~~d~~  569 (649)
T KOG1179|consen  513 TFRWKGENVSTTEVEDVLSALDFLQDVN-----------------------VYGVTVPGYEGRAGMAAIVLDPTTEKDLE  569 (649)
T ss_pred             ceeecCCcccHHHHHHHHhhhcccccee-----------------------EEEEecCCccCccceEEEEecCcccchHH
Confidence            9999999999999999999999999998                       99987665 45667788888888888999


Q ss_pred             HHHHHHHhhh
Q psy7295         154 ELRGYFKGKA  163 (165)
Q Consensus       154 ~l~~~l~~~l  163 (165)
                      ++.+++++.|
T Consensus       570 ~l~~~l~~~L  579 (649)
T KOG1179|consen  570 KLYQHLRENL  579 (649)
T ss_pred             HHHHHHHhhC
Confidence            9999998876

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.59  E-value=3.6e-15  Score=132.63  Aligned_cols=96  Identities=29%  Similarity=0.321  Sum_probs=90.5

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      ++|+.+.|+|..++++|.|..|||++.|.++++||+++++.|...|..+++|+|||++++.++|.+.++||.|+++|+.|
T Consensus       547 ~~n~~~~ild~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g  626 (642)
T COG1020         547 VANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRG  626 (642)
T ss_pred             eCCCeEEEECCCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEece
Confidence            46789999998899999999999999999999999999999999996546999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCC
Q psy7295          81 ENIYPSEIEDFLTTHP   96 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~   96 (165)
                      ++|.++|||..+.++|
T Consensus       627 ~Riel~eie~~l~~~~  642 (642)
T COG1020         627 FRIELGEIEAALAEQP  642 (642)
T ss_pred             EecCcHHHHHHHhcCC
Confidence            9999999999998875

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.49  E-value=1.5e-13  Score=116.99  Aligned_cols=87  Identities=28%  Similarity=0.368  Sum_probs=73.2

Q ss_pred             CeEeeccEEEEecCCcEEEecCCCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEee
Q psy7295          50 NWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGI  129 (165)
Q Consensus        50 ~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~  129 (165)
                      .|++|||+++++++|+|+|.||+||+||++|++|+|.+||+.|.+||+|.+++                       +.. 
T Consensus       275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~-----------------------v~~-  330 (386)
T TIGR02372       275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAA-----------------------VRL-  330 (386)
T ss_pred             ceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEE-----------------------EEc-
Confidence            37999999999999999999999999999999999999999999999999987                       542 


Q ss_pred             cCCCCCceEEEEEEeCCCCCCC--HHHHHHHHHhhhc
Q psy7295         130 RDERMGEEIGASIRLTENSSLT--EDELRGYFKGKAI  164 (165)
Q Consensus       130 ~~~~~~~~~~a~v~~~~~~~~~--~~~l~~~l~~~l~  164 (165)
                          .++.+.++++++++...+  .++++++++++|.
T Consensus       331 ----~g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~L~  363 (386)
T TIGR02372       331 ----DGRRLKAFIVVAEDADEAELEIELRATAARHLP  363 (386)
T ss_pred             ----CCceEEEEEEECCCCChHHHHHHHHHHHHHhCC
Confidence                356888999887543322  4578888887764

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.27  E-value=7.3e-11  Score=101.94  Aligned_cols=80  Identities=20%  Similarity=0.263  Sum_probs=63.0

Q ss_pred             CcEEEEECCC-CCccCCCCceEEEEEeCc--------ccccccCChhhhhhhhcCCCeEeeccEEEEe-cC----Cc---
Q psy7295           3 LNIVKVVDSD-NRMVPYGQQGELLIRGYC--------NMLRYWGNEEKTKEILGEDNWLRTGDQFVLT-KD----GF---   65 (165)
Q Consensus         3 g~~v~vvd~~-g~~~~~g~~GeL~v~g~~--------~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~-~d----G~---   65 (165)
                      .+.++|+|++ +.++|+|+.|||++++-.        ...+                 |+|||++++. .+    |.   
T Consensus       259 ~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~~r~~~PliR-----------------YrtgD~~~~~~~~~C~CGr~~~  321 (445)
T TIGR03335       259 LVHLDVYDPRHQRFLPDGECGRIVLTTLLKPGERCGSLLIN-----------------YDTEDTTVVISRDRCPCGRTHM  321 (445)
T ss_pred             ceEEEEEcCCCCCCCcCCCceEEEEEecCCCCccCCceEEE-----------------eecCceEEEecCCCCCCCCCcc
Confidence            4678999998 567999999999998752        2334                 4899999862 12    21   


Q ss_pred             -EEEecCCCceEEECcEEEChHHHHHHHhcCCChH
Q psy7295          66 -GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDIL   99 (165)
Q Consensus        66 -l~~~GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~   99 (165)
                       +...||.||+++++|.+|+|.+||++|.+++++.
T Consensus       322 r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~  356 (445)
T TIGR03335       322 RILNPEREAETIWISGVPFNRVDVERAVFQRENMD  356 (445)
T ss_pred             eeCCCcccCceEEECCEEeCHHHHHHHHhccCCCC
Confidence             4457999999999999999999999999954433

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PTZ00297 pantothenate kinase; Provisional

Probab=99.10  E-value=4.5e-10  Score=108.55  Aligned_cols=97  Identities=16%  Similarity=0.229  Sum_probs=78.7

Q ss_pred             CCCcEEEEECCC--CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEE-
Q psy7295           1 MSLNIVKVVDSD--NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLII-   77 (165)
Q Consensus         1 ~pg~~v~vvd~~--g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~-   77 (165)
                      +||++++|.+..  +..   +..|||+++       |+++|+.|.+.+  ++|+         +||+|.|+||++++|| 
T Consensus       806 lpgvEvKI~~~~E~~~~---~~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~dG~L~IidRkKdlikl  864 (1452)
T PTZ00297        806 APSLQVDLEPFDEPSDG---AGIGQLVLA-------KKGEPRRTLPIA--AQWK---------RDRTLRLLGPPLGILLP  864 (1452)
T ss_pred             cCceEEEEcccccccCC---CCCCeEEEE-------ECCChHHHHHhh--CcCc---------cCCeEEEEeccccceEC
Confidence            589999999742  222   246999995       458999998754  5775         6899999999999999 


Q ss_pred             ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeC
Q psy7295          78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLT  145 (165)
Q Consensus        78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~  145 (165)
                      .+|++|+|..||+.+.++|.|.+++                       |+|-...    .++|+|+++
T Consensus       865 s~GEyVaP~~IE~~l~~sp~I~qi~-----------------------V~Gd~~k----~lvALVvpd  905 (1452)
T PTZ00297        865 VAYEYVIAAELERIFSQSRYVNDIF-----------------------LYADPSR----PIIAIVSPN  905 (1452)
T ss_pred             CCCcEEcHHHHHHHHhcCCCccEEE-----------------------EEecCCC----ceEEEEEeC
Confidence            6999999999999999999999988                       8875433    378888764

>KOG1178|consensus

Probab=99.09  E-value=5.8e-10  Score=104.10  Aligned_cols=93  Identities=25%  Similarity=0.304  Sum_probs=81.7

Q ss_pred             CCeEeeccEEEEecCCcEEEecCCCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEe
Q psy7295          49 DNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYG  128 (165)
Q Consensus        49 ~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~  128 (165)
                      +.+|+|||+++.-++|.+.+.||.|++||.+|+|+.+.+|+..+..+|.|.++.                       +..
T Consensus       453 ~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~i-----------------------tl~  509 (1032)
T KOG1178|consen  453 ARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAI-----------------------TLA  509 (1032)
T ss_pred             hhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhh-----------------------eee
Confidence            468999999999899999999999999999999999999999999999999998                       777


Q ss_pred             ecCCCCCceEEEEEEeCCCCCCC-HHHHHHHHHhhhc
Q psy7295         129 IRDERMGEEIGASIRLTENSSLT-EDELRGYFKGKAI  164 (165)
Q Consensus       129 ~~~~~~~~~~~a~v~~~~~~~~~-~~~l~~~l~~~l~  164 (165)
                      ..+..-++.+.+|++.......+ ..+++.++.+.|+
T Consensus       510 ~~~~~~~~~l~aFvv~~~~~~~~~~~~i~~~l~~~La  546 (1032)
T KOG1178|consen  510 RENSTVGQTLLAFVVERGGSKSVLIRDIRNYLKKELA  546 (1032)
T ss_pred             eeccccCceEEEEEeccCCCCchhHHHHHHhhccccc
Confidence            77777799999999987654433 4778888887765

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.07  E-value=1.9e-09  Score=92.75  Aligned_cols=81  Identities=35%  Similarity=0.613  Sum_probs=67.7

Q ss_pred             CcEEEEECCC-CCccCCCCceEEEEEeC----cccccccCChhhhhhhhcCCCeEeeccEEEEecCCc---------EEE
Q psy7295           3 LNIVKVVDSD-NRMVPYGQQGELLIRGY----CNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF---------GSV   68 (165)
Q Consensus         3 g~~v~vvd~~-g~~~~~g~~GeL~v~g~----~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~---------l~~   68 (165)
                      ...++|+||+ |..++.|+.|||+++.-    .+...                 |+|||+.++..+-+         -.+
T Consensus       267 ~~~~Ei~dP~t~e~l~dge~GelV~T~L~~~~~PlIR-----------------YrtgDit~i~~~~C~cGr~~~ri~~I  329 (438)
T COG1541         267 HFIFEIVDPETGEQLPDGERGELVITTLTKEGMPLIR-----------------YRTGDITVILSDPCGCGRTHRRIERI  329 (438)
T ss_pred             hceeeeecCCcCccCCCCCeeEEEEEeccccCcceEE-----------------EEcCCeeEecccCCCCCCcccccccc
Confidence            3568899987 99999999999999762    23333                 48999999976322         349


Q ss_pred             ecCCCceEEECcEEEChHHHHHHHhcCCChHH
Q psy7295          69 VGRIKDLIIRGGENIYPSEIEDFLTTHPDILE  100 (165)
Q Consensus        69 ~GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~  100 (165)
                      .||.||++++.|++|+|.+||+.|.+++.+..
T Consensus       330 ~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~  361 (438)
T COG1541         330 EGRSDDMLIVRGVNVFPSQIERVLLQIPEVTP  361 (438)
T ss_pred             CcccccEEEECCEEeCHHHHHHHHhcccCCCc
Confidence            99999999999999999999999999999883

>KOG3628|consensus

Probab=98.70  E-value=1.4e-07  Score=87.77  Aligned_cols=101  Identities=21%  Similarity=0.284  Sum_probs=82.4

Q ss_pred             CCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhh-hhhhh---------cCCCeEeeccEEEEe------cCC
Q psy7295           2 SLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEK-TKEIL---------GEDNWLRTGDQFVLT------KDG   64 (165)
Q Consensus         2 pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~-t~~~~---------~~~~~~~TGD~~~~~------~dG   64 (165)
                      +++++.|++|+ -.+|..|+.||+|+.|...+.+|++-... ....|         ....|.||||+|++.      ..+
T Consensus      1160 ~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~ 1239 (1363)
T KOG3628|consen 1160 VYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANV 1239 (1363)
T ss_pred             ccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccc
Confidence            57899999998 67999999999999999998888764221 11122         134699999999973      222


Q ss_pred             ----cEEEecCCCceEEECcEEEChHHHHHHH-hcCCChHHhH
Q psy7295          65 ----FGSVVGRIKDLIIRGGENIYPSEIEDFL-TTHPDILEAY  102 (165)
Q Consensus        65 ----~l~~~GR~dd~i~~~G~~v~~~eIE~~l-~~~~~v~~a~  102 (165)
                          -+|++|-.++.+.++|-+.+|.+||..+ +.||.|..++
T Consensus      1240 e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~ca 1282 (1363)
T KOG3628|consen 1240 ERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCA 1282 (1363)
T ss_pred             eeeeeEEEeecccceeeecCcccCcchHHHHHHHhccccccee
Confidence                4899999999999999999999999988 5689999987

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.11  E-value=3.2e-06  Score=55.26  Aligned_cols=49  Identities=41%  Similarity=0.595  Sum_probs=43.8

Q ss_pred             HHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhhc
Q psy7295          87 EIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI  164 (165)
Q Consensus        87 eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~l~  164 (165)
                      |||+.|.+||+|.+++                       |++.+++..|+.+++|+++      +.++++++|+++|.
T Consensus         1 EIE~~l~~~~~V~~~~-----------------------V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~   49 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAA-----------------------VVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLP   49 (73)
T ss_dssp             HHHHHHHTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-
T ss_pred             CHHHHHhcCCCccEEE-----------------------EEEEEcccccccceeEEEe------eecccccchhhhCC
Confidence            7999999999999998                       9999999999999999997      44899999988763

...

>KOG3628|consensus

Probab=98.03  E-value=1.5e-05  Score=74.80  Aligned_cols=112  Identities=14%  Similarity=0.127  Sum_probs=82.0

Q ss_pred             cEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhc------------CCCeEeeccEEEEecCCcEEEec
Q psy7295           4 NIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG------------EDNWLRTGDQFVLTKDGFGSVVG   70 (165)
Q Consensus         4 ~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~------------~~~~~~TGD~~~~~~dG~l~~~G   70 (165)
                      ..+.|++|+ .+.|..+++|||||.++++...||.-+..|+..|.            +..|.|||=+|++.+++-+++.+
T Consensus       512 ~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gki~vl~~  591 (1363)
T KOG3628|consen  512 ATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGKIYVLGL  591 (1363)
T ss_pred             eEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeCCeEEEEEe
Confidence            456778887 78899999999999999999999999888887772            22488999999998655444444


Q ss_pred             CCCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeec
Q psy7295          71 RIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIR  130 (165)
Q Consensus        71 R~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~  130 (165)
                      +.|.+.-+.|.+....+|-..-..+.-++.+.               +.++.+|-+....
T Consensus       592 k~d~llq~~~~~h~~d~iv~thya~~~iktV~---------------R~v~~VF~~saf~  636 (1363)
T KOG3628|consen  592 KEDGLLQVSGWRHNADDIVATHYAVELIKTVM---------------RGVIAVFDVSAFE  636 (1363)
T ss_pred             chhhhhhhhhhhhhhhhhHhhHHHHHHHHHHH---------------hccceEEEEeeee
Confidence            55555557888888777666555555555554               5556666666655

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=97.00  E-value=0.0048  Score=53.67  Aligned_cols=51  Identities=27%  Similarity=0.421  Sum_probs=37.6

Q ss_pred             EeeccEEEEecC----Cc----E-EEecCCCceEEE---Cc--EEEChHHHHHHHh-cCCChHHhH
Q psy7295          52 LRTGDQFVLTKD----GF----G-SVVGRIKDLIIR---GG--ENIYPSEIEDFLT-THPDILEAY  102 (165)
Q Consensus        52 ~~TGD~~~~~~d----G~----l-~~~GR~dd~i~~---~G--~~v~~~eIE~~l~-~~~~v~~a~  102 (165)
                      |+|||++...++    |.    + .+.||.+|++++   +|  .+|+|..+++.+. ..++|.+.-
T Consensus       297 YrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQ  362 (430)
T TIGR02304       297 YRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYR  362 (430)
T ss_pred             eeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEE
Confidence            589999887443    32    3 388999999985   34  5569999998854 567887765

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=96.67  E-value=0.0039  Score=42.95  Aligned_cols=60  Identities=23%  Similarity=0.370  Sum_probs=38.7

Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCC---CHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSL---TEDELR  156 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~---~~~~l~  156 (165)
                      |.||+|.+||++|.++|++...+                       -+-+..+.....+...+.+.++...   ..+++.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y-----------------------~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~   57 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEY-----------------------QIVVTREGGLDELTVRVELRPGFSDDAEDLEALA   57 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEE-----------------------EEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcE-----------------------EEEEEcCCCCcEEEEEEEECCccCcchHHHHHHH
Confidence            78999999999999999998544                       3334433455667777888775432   234444


Q ss_pred             HHHHhh
Q psy7295         157 GYFKGK  162 (165)
Q Consensus       157 ~~l~~~  162 (165)
                      +.++++
T Consensus        58 ~~i~~~   63 (96)
T PF14535_consen   58 ERIAER   63 (96)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=95.80  E-value=0.034  Score=49.57  Aligned_cols=112  Identities=17%  Similarity=0.156  Sum_probs=66.4

Q ss_pred             cCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEec--CC--cEEEecCCCceEEECcEEEChHHHHHH
Q psy7295          16 VPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK--DG--FGSVVGRIKDLIIRGGENIYPSEIEDF   91 (165)
Q Consensus        16 ~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~--dG--~l~~~GR~dd~i~~~G~~v~~~eIE~~   91 (165)
                      +..|+.=||+|+..+-.-+                 |+.||+.+...  ++  .+.|+||.+.++.+.|++++-.++.++
T Consensus       352 le~G~~YelviTt~~GLyR-----------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~a  414 (528)
T PF03321_consen  352 LEVGEEYELVITTNSGLYR-----------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEA  414 (528)
T ss_dssp             --TT-EEEEEEESTTS-SS-----------------EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHH
T ss_pred             hcCCCeEEEEEecccceee-----------------eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHH
Confidence            5567777888877654444                 48999999852  34  699999999999999999999999999


Q ss_pred             HhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhh
Q psy7295          92 LTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKA  163 (165)
Q Consensus        92 l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~l  163 (165)
                      +.+..  ...                ...+.-|++.+.........-..++.+... ..+.+++.+.+-+.|
T Consensus       415 v~~~~--~~~----------------~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~-~~~~~~~~~~lD~~L  467 (528)
T PF03321_consen  415 VARAL--QET----------------GLELRDFTVAPDPSSGNPPHYVLFWELEGE-PDDLEELAKALDESL  467 (528)
T ss_dssp             HHHHH--HCT----------------T-EEEEEEEEEE--SSSSBEEEEEEEECS--HHHHHHHHHHHHHCS
T ss_pred             HHHHH--Hhc----------------CCceeeEEEEeecccCCCCceEEEEEeCCC-chHHHHHHHHHHHHh
Confidence            86651  111                112333445554333344566667776543 223455555555544

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=92.42  E-value=0.53  Score=40.19  Aligned_cols=62  Identities=26%  Similarity=0.343  Sum_probs=44.0

Q ss_pred             EEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecC--------CcEEEecCCCceE
Q psy7295           6 VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD--------GFGSVVGRIKDLI   76 (165)
Q Consensus         6 v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~d--------G~l~~~GR~dd~i   76 (165)
                      |.|+|++ ..+++.|+.|-|.+-.+... .|             -+...|.|+|.+..+        .+|.++||.+.. 
T Consensus       287 V~iRDp~tl~~~~~Ge~Gli~vidl~~~-s~-------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~a-  351 (365)
T PF04443_consen  287 VIIRDPETLEPLPPGETGLIQVIDLANT-SY-------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADGA-  351 (365)
T ss_pred             EEEECCCCCcCCCCCCeeEEEEEccccc-CC-------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCCC-
Confidence            6777987 78999999999998776533 22             233579999987543        279999998643 


Q ss_pred             EECcEE
Q psy7295          77 IRGGEN   82 (165)
Q Consensus        77 ~~~G~~   82 (165)
                      .++|-.
T Consensus       352 e~RGCs  357 (365)
T PF04443_consen  352 EIRGCS  357 (365)
T ss_pred             ccCCcH
Confidence            244443

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=87.27  E-value=7.2  Score=35.56  Aligned_cols=43  Identities=14%  Similarity=0.164  Sum_probs=37.6

Q ss_pred             EeeccEEEEec----CCcEEEecCCCceEEECcEEEChHHHHHHHhc
Q psy7295          52 LRTGDQFVLTK----DGFGSVVGRIKDLIIRGGENIYPSEIEDFLTT   94 (165)
Q Consensus        52 ~~TGD~~~~~~----dG~l~~~GR~dd~i~~~G~~v~~~eIE~~l~~   94 (165)
                      |+.||..+...    .-.|.|+||.+.++.+.|+++.-.+++.++.+
T Consensus       410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            58999999852    34689999999999999999999999998876

---

Homologous Structure Templates

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	9e-56
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	7e-54
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	5e-53
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-51
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	8e-50
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	4e-46
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	5e-45
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-44
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-44
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	3e-44
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	4e-44
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	3e-42
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	5e-41
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	9e-39
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	9e-39
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	8e-32
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	8e-26
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	3e-22
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	6e-22
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	6e-18
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-10
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	7e-09
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	1e-08
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	3e-08
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-06
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	2e-05
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	6e-05
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	6e-05
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-04
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-04

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  182 bits (464), Expect = 9e-56
 Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 24/159 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
            +V D  +R V  G+ G LL RG   +  Y+  EE       ED + RTGD   LT+DG+
Sbjct: 363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGY 422

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             V GR KD I RGGE +   E+E+ L  HP + +A                        
Sbjct: 423 IVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDA-----------------------A 459

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
           +  + D+ +GE     I   +  +    EL+ + + + +
Sbjct: 460 MVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRERGL 497

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  178 bits (454), Expect = 7e-54
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 25/159 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V V D++   +P G+ G L+ RG      Y+ + +        + +  +GD   +  +G+
Sbjct: 367 VWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGY 426

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
            +V GR KD I RGGE I   EIE+ L  HP ++ A                        
Sbjct: 427 ITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYA-----------------------A 463

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
           +  + DE MGE+  A + + E   L   ++R + + + I
Sbjct: 464 LVSMEDELMGEKSCAYLVVKE--PLRAVQVRRFLREQGI 500

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  175 bits (445), Expect = 5e-53
 Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 23/157 (14%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           +K+VD   R VP G+ G L  RG      Y+ + E   ++  EDN+  +GD    T DG 
Sbjct: 372 IKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGN 431

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             VVGRIKD I RGGE I   EIE  +  HP+++ A                        
Sbjct: 432 LRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHA-----------------------A 468

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
           +  I DE+ GE+  A I             R   +  
Sbjct: 469 LVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELG 505

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  170 bits (432), Expect = 3e-51
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 24/158 (15%)

Query: 6   VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
            +V D +  + +P G  G + ++G      YW   EKTK    +D +  TGD   + + G
Sbjct: 331 ARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERG 390

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
           +  ++GR KDL+I GG N+YP EIE  +   P ++E+                       
Sbjct: 391 YVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVES----------------------- 427

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
            V G+     GE + A +   + +++ E ++     G+
Sbjct: 428 AVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQ 465

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  166 bits (422), Expect = 8e-50
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 28/157 (17%)

Query: 6   VKVVDSD---NRMVPYGQQGELLIRGY-CNMLRYWGNEEKTKEILGEDNWLRTGDQFVLT 61
           V++V      + +V  G++GEL++       + Y    + T E L +D W RT D  V T
Sbjct: 332 VRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWT 390

Query: 62  KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI 121
            +G   ++GR+ D+II GGENI+PSEIE  L T P + E                     
Sbjct: 391 PEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEV-------------------- 430

Query: 122 PGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY 158
               V G+ D+R G+ + A +      +L+ D L  +
Sbjct: 431 ---VVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  156 bits (396), Expect = 4e-46
 Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 26/159 (16%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V VVD+++R +P G+ GE+++RG      YW N   T+     + W  TGD      DG+
Sbjct: 332 VAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGY 390

Query: 66  GSVVGRI--KDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
               GR   K+LI  GGEN+YP+E+E  L  HP I +A                      
Sbjct: 391 LFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADA---------------------- 428

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
             V G+ D +  E I A        S+  D L  +    
Sbjct: 429 -VVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASL 466

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  153 bits (389), Expect = 5e-45
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 26/157 (16%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           V V   D  +  +G+ GE++I+    +  YW   E T++   ++ W RTGD   +  +G+
Sbjct: 348 VAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGY 405

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +  R+KD+II GGEN+YP+EIE  +   P + E                         
Sbjct: 406 LYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEV-----------------------A 442

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
           V G+ DE+ GE   A +   + + ++E ++  Y   +
Sbjct: 443 VIGLPDEKWGEIAAAIVVADQ-NEVSEQQIVEYCGTR 478

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  153 bits (388), Expect = 1e-44
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 24/158 (15%)

Query: 6   VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
            KV+D D  + +   ++GE+ ++G   M  Y  N E TKE++ E+ WL TGD     ++ 
Sbjct: 373 AKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
              +V R+K LI   G  + P+E+E  L  HP I +A                       
Sbjct: 433 HFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDA----------------------- 469

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
            V G+ D   GE  GA + L    ++TE E+  Y   +
Sbjct: 470 GVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  151 bits (384), Expect = 2e-44
 Identities = 43/162 (26%), Positives = 61/162 (37%), Gaps = 28/162 (17%)

Query: 6   VKVVDSDNRMVP---YGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK 62
           +++V+ D   +        GE+ +RG      Y    + T     ED + RTGD  V   
Sbjct: 335 LRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP 394

Query: 63  DGFGSVVGR-IKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI 121
           DG+  +VGR   DLI  GG  I   EIE+ L  HP++ EA                    
Sbjct: 395 DGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREA-------------------- 434

Query: 122 PGYCVYGIRDERMGEEIGASI-RLTENSSLTEDELRGYFKGK 162
               V G  D  +GE I A I      +      L  +   +
Sbjct: 435 ---AVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAAR 473

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  151 bits (385), Expect = 3e-44
 Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 24/158 (15%)

Query: 6   VKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
            KVVD D  + +   Q+GEL +RG   M  Y  N E T  ++ +D WL +GD     +D 
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
              +V R+K LI   G  + P+E+E  L  HP+I +A                       
Sbjct: 431 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA----------------------- 467

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
            V G+ D+  GE   A + L    ++TE E+  Y   +
Sbjct: 468 GVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ 505

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  151 bits (383), Expect = 4e-44
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 24/158 (15%)

Query: 6   VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           +K+VD +    +P  Q GE+ IRG   M  Y  + E T   + ++ WL TGD   +  D 
Sbjct: 366 MKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDD 425

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
              +V R+K+LI   G  + P+E+E  L  HP+I +A                       
Sbjct: 426 ELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDA----------------------- 462

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
            V G++DE  GE   A +  +E S  TEDE++ Y   +
Sbjct: 463 AVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQ 500

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  146 bits (370), Expect = 3e-42
 Identities = 38/157 (24%), Positives = 58/157 (36%), Gaps = 32/157 (20%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           VK+ + +         GEL+I+G   M  Y    + T     E+ +  TGD   +  +G+
Sbjct: 338 VKIKNPNK-----EGHGELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEIDHEGY 390

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             +  R KDLII GGENIYP +IE      P I +A                        
Sbjct: 391 VMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDA-----------------------V 427

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
             G  D+  G+             +++ +L  Y    
Sbjct: 428 CVGHPDDTWGQVPKLYFVSES--DISKAQLIAYLSKH 462

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  143 bits (362), Expect = 5e-41
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 30/164 (18%)

Query: 6   VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDN----WLRTGDQFVL 60
           +KV+  ++ R +  G+ GE++IRG      YW  E++ +E    D     + RTGD   +
Sbjct: 367 LKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFI 426

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCS 120
            ++GF     R+K++I   G  I P E+E  L  H  +++                    
Sbjct: 427 DEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDV------------------- 467

Query: 121 IPGYCVYGIRDERMGEEIGASIRLTEN--SSLTEDELRGYFKGK 162
                V G  DE  GE   A I L       + E+++  + + +
Sbjct: 468 ----AVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRER 507

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  136 bits (346), Expect = 9e-39
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 28/160 (17%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
           +++ D     VP G+ G+L I+G    + YW N EK++       W+R+GD++    +G 
Sbjct: 363 IELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGC 421

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
               GR  D++   G+ + P E+E  L  H  +LEA                        
Sbjct: 422 YVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEA-----------------------A 458

Query: 126 VYGIRDERMGEEIGASIRLTEN---SSLTEDELRGYFKGK 162
           V G+       +  A + L      S +  +EL+ + K +
Sbjct: 459 VVGVDHGG-LVKTRAFVVLKREFAPSEILAEELKAFVKDR 497

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  138 bits (350), Expect = 9e-39
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 24/158 (15%)

Query: 6   VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
           +K+VD D    +   Q GE+ IRG+  M  Y  N   T E + +D WL TGD  ++  D 
Sbjct: 413 MKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDD 472

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
              +V R+K+LI   G  + P+E+E  L  HPDI +                        
Sbjct: 473 ELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDV----------------------- 509

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
            V  +++E  GE   A +  +++S L+ED+++ +   +
Sbjct: 510 AVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQ 547

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  117 bits (297), Expect = 8e-32
 Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 25/159 (15%)

Query: 6   VKVVDSDNRMVPY-GQ-QGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
           ++V D + R VP  G+  GE+ ++G      Y+GNEE T+  L  D + RTGD  V  ++
Sbjct: 366 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           G+  +  R+KDLI  GGE I   ++E+ L  HP + EA                      
Sbjct: 426 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEA---------------------- 463

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
             V  I   +  E   A +         E+      K  
Sbjct: 464 -AVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAG 501

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 91.2 bits (227), Expect = 3e-22
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 12/94 (12%)

Query: 6   VKVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILG--------EDNWLRTGD 56
           VK++D D  +   + Q GE+ ++       YW   E+T+               +LRTGD
Sbjct: 383 VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGD 442

Query: 57  Q-FVLTKDGFGSVVGRIKDLIIRGGENIYPSEIE 89
             F+   +    V GRIKDLII  G+N YP +IE
Sbjct: 443 LGFL--HENELYVTGRIKDLIIIYGKNHYPQDIE 474

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 90.4 bits (225), Expect = 6e-22
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRG-----YCNMLRYWGNEEKTKEILGEDNWLRTGDQFVL 60
           V+++D    ++P G +G++ IR            Y  N +KT   +   ++   GD+ + 
Sbjct: 385 VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIK 443

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
            +DG+   +GR  D+I   G  I PSE+E+ L  HP ++E  V
Sbjct: 444 DEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAV 486

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 78.8 bits (195), Expect = 6e-18
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 6   VKVVDSDNRMVPYGQQGELLIR---GYCNMLR--YWGNEEKTKEILGEDNWLRTGDQFVL 60
           ++++D D R+   G++GE++I    G    L   Y  + E+T+E    D +  TGD   +
Sbjct: 404 IELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWM 462

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
            +DG+   VGR  D+I   G  + P E+E  L  HP +LE  +
Sbjct: 463 DEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAI 505

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 15/80 (18%)

Query: 5   IVKVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILG-----------EDNWL 52
           IV++VDSD  +  P G  GE+ + G      YW   ++++   G           E  WL
Sbjct: 403 IVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWL 462

Query: 53  RTGDQ-FVLTKDGFGSVVGR 71
           RTGD  FV   DG   ++GR
Sbjct: 463 RTGDSGFVT--DGKMFIIGR 480

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 37/155 (23%)

Query: 5   IVKVVDSDN-RMVPYGQQGEL----LIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD-QF 58
             +++D +   ++P G+ GEL    L +    ++RY                 RT D   
Sbjct: 271 YPEIIDPETGEVLPDGELGELVFTSLTKEALPIIRY-----------------RTRDLTR 313

Query: 59  VLTKDG-----FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFT 113
           +L            + GR  D++I  G N++P++IE+ L     +       Y++ L   
Sbjct: 314 LLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRAL----APHYQIVLTKE 369

Query: 114 GLLQQCSI-----PGYCVYGIRDERMGEEIGASIR 143
           G L   ++     P         +   + +   I+
Sbjct: 370 GPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIK 404

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 40/158 (25%)

Query: 5   IVKVVDSDN-RMVPYGQQGEL----LIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFV 59
           +V+++D +    VP G+ GEL    L R    ++RY                 RT D   
Sbjct: 266 LVEIIDPETGEPVPEGEIGELVLTTLDREMMPLIRY-----------------RTRDLTR 308

Query: 60  LTKDG---------FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKL 110
           +                + GR  D+ I  G NI+P ++E  L   P++     S Y + L
Sbjct: 309 ILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPEL----GSNYLITL 364

Query: 111 DFTGLLQQCSI-----PGYCVYGIRDERMGEEIGASIR 143
           +      +  +            I  E++  +I   ++
Sbjct: 365 ETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQLK 402

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 32/128 (25%)

Query: 5   IVKVVDSDN-RMVPYGQQGEL----LIRGYCNMLRYWGNEEKTKEILGEDNWLRTGD-QF 58
             +++D     ++P G QGEL    L +    ++RY                 RT D   
Sbjct: 273 YPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRY-----------------RTRDLTA 315

Query: 59  VLTKDG-----FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFT 113
           +L            + GR  D++I  G N++PS+IE+ +   P +      ++++ L   
Sbjct: 316 LLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLL----SGQFQITLSRD 371

Query: 114 GLLQQCSI 121
           G + +  +
Sbjct: 372 GHMDRLDL 379

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 35/115 (30%)

Query: 8   VVDSDNRMVPYGQQGELLI------RGYCNMLRYWGNEEKTKE--ILGEDNWL-RTGDQF 58
           ++D D + +  G+QGE+++      +G      Y  N EKT E     +      TGD  
Sbjct: 335 IIDEDGKELSSGEQGEIIVTGPAVSKG------YLNNPEKTAEAFFTFKGQPAYHTGDIG 388

Query: 59  VLTKDG---FGSVVGRI----KDLIIRGGENIY---PSEIEDFLTTHPDILEAYV 103
            LT+D    +    GR+    K     G    Y     ++   L   P +  A  
Sbjct: 389 SLTEDNILLY---GGRLDFQIK---YAG----YRIELEDVSQQLNQSPMVASAVA 433

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 36/115 (31%)

Query: 8   VVDSDNRMVPYGQQGELLI------RGYCNMLRYWGNEEKTKE--ILGEDNWL-RTGDQF 58
           ++  D  + P G++GE++I       G      Y G+ E T++   + +     +TGD  
Sbjct: 332 IMKEDGTIAPDGEKGEIVIVGPSVSVG------YLGSPELTEKAFTMIDGERAYKTGDAG 385

Query: 59  VLTKDG---FGSVVGRI----KDLIIRGGENIY---PSEIEDFLTTHPDILEAYV 103
            +  +G   +    GR+    K   + G    Y     EIE  L     +  A +
Sbjct: 386 YVE-NGLLFY---NGRLDFQIK---LHG----YRMELEEIEHHLRACSYVEGAVI 429

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 44/121 (36%)

Query: 8   VVDSDNRMVPYGQQGELLI------RGYCNMLRYWGNEEKTKE--I---LGEDNWL-RTG 55
           +VD + ++   G+ GEL I      RG      YW   E T +  +         L +TG
Sbjct: 359 IVDENLQLKSVGEAGELCIGGEGLARG------YWKRPELTSQKFVDNPFVPGEKLYKTG 412

Query: 56  DQFVLTK---DG---FGSVVGRI----KDLIIRGGENIY---PSEIEDFLTTHPDILEAY 102
           D     +   DG   +   +GRI    K   IRG    +     E+E  L  H  I E  
Sbjct: 413 D---QARWLSDGNIEY---LGRIDNQVK---IRG----HRVELEEVESILLKHMYISETA 459

Query: 103 V 103
           V
Sbjct: 460 V 460

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 8   VVDSDNRMVPYGQQGELLIR----GYCNMLR-YWGNEEKTKEI--LGEDNWLRTGDQFVL 60
           +VD++        +G L+I     G     R  +G+ E+ ++       N   +GD    
Sbjct: 448 LVDNEGHPQEGATEGNLVITDSWPG---QARTLFGDHERFEQTYFSTFKNMYFSGDGARR 504

Query: 61  TKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYV 103
            +DG+  + GR+ D++   G  +  +EIE  L  HP I EA V
Sbjct: 505 DEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 547

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 45/167 (26%)

Query: 2   SLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLT 61
           +       +   ++        LL   +  +  +      T   L   +   T D+    
Sbjct: 255 NAKAWNAFNLSCKI--------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---V 303

Query: 62  KDGFGSVVG-RIKDLIIRGGENIYPSEIEDFLTTHP---DILEAYVSEYRLKLDFTGLLQ 117
           K      +  R +DL         P E+   LTT+P    I+   + +     D     +
Sbjct: 304 KSLLLKYLDCRPQDL---------PREV---LTTNPRRLSIIAESIRDGLATWDN---WK 348

Query: 118 QCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
                      +  +++   I +S+     + L   E R  F   ++
Sbjct: 349 H----------VNCDKLTTIIESSL-----NVLEPAEYRKMFDRLSV 380

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 33/111 (29%)

Query: 10  DSDNRMVPYGQQGELLI------RGYCNMLRYWGNEEKTKEILGEDNWL-RTGDQFVLTK 62
              N  V  G  GEL+I       GY          +           + RTGD   +  
Sbjct: 363 PGSNEHVKKGMAGELVIEGSLVANGY------LNRPDAKGFCDINGRKMYRTGDIVRMDA 416

Query: 63  DG---FGSVVGRI----KDLIIRGGENIY---PSEIEDFLTTHPDILEAYV 103
           D    F   +GR     K   +RG          E+ + + +        V
Sbjct: 417 DSSILF---LGRKDEQVK---VRG----QRLELGEVSEVIRSLSPTDIDVV 457

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 36/115 (31%)

Query: 8   VVDSDNRMVPYGQQGELLI------RGYCNMLRYWGNEEKTKE--ILGEDNWL-RTGDQF 58
           ++D + + +P G++GE++I      RG      Y G  E T++     E  W  RTGD  
Sbjct: 331 IMDEEGQPLPEGEKGEIVIAGPSVSRG------YLGEPELTEKAFFSHEGQWAYRTGDAG 384

Query: 59  VLTKDG---FGSVVGRI----KDLIIRGGENIY---PSEIEDFLTTHPDILEAYV 103
            +  DG        GR+    K   + G    Y     EIE  +     +  A V
Sbjct: 385 FIQ-DGQIFC---QGRLDFQIK---LHG----YRMELEEIEFHVRQSQYVRSAVV 428

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.98
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.97
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.97
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.97
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.97
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.97
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.97
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.97
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.97
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.97
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.97
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.97
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.97
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.97
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.97
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.97
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.97
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.96
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.96
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.96
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.96
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.96
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.96
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.96
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.95
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.95
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.95
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.95
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.94
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.89
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.88
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.87
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.81
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.71
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.24
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.18
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	98.01
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	97.63
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	97.61
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	97.4

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.9e-32  Score=236.01  Aligned_cols=141  Identities=28%  Similarity=0.504  Sum_probs=134.1

Q ss_pred             CCCcEEEEEC-CCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd-~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|+++++|+| ++|+++|.|+.|||+|+||+++.|||++|+.|.+.|.++|||+|||++++++||+++|+||.||+||++
T Consensus       326 ~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~  405 (503)
T 4fuq_A          326 LPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITG  405 (503)
T ss_dssp             CTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEET
T ss_pred             CCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEEC
Confidence            5799999999 569999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.|||+.|.+||+|.+++                       |++.+++..++.+++++++.++...+.++++++|
T Consensus       406 G~~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  462 (503)
T 4fuq_A          406 GFNVYPKEIESEIDAMPGVVESA-----------------------VIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGL  462 (503)
T ss_dssp             TEEECHHHHHHHHHTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred             CEEECHHHHHHHHHhCCCeeEEE-----------------------EEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHH
Confidence            99999999999999999999998                       9999999999999999999888888999999999


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       463 ~~~L~  467 (503)
T 4fuq_A          463 DGQLA  467 (503)
T ss_dssp             BTTBC
T ss_pred             Hhhcc
Confidence            88764

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.98  E-value=4.2e-32  Score=235.27  Aligned_cols=141  Identities=35%  Similarity=0.525  Sum_probs=134.1

Q ss_pred             CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|+++++|+|++ |++++.|+.|||+|+||+++.|||++|+.|.+.|..+|||+|||++++++||+++|+||.||+||++
T Consensus       361 ~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~  440 (536)
T 3ni2_A          361 VRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYK  440 (536)
T ss_dssp             CSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEET
T ss_pred             CCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEEC
Confidence            579999999954 9999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.|||+.|.+||+|.+++                       |++.+++..++.++++++..++...+.++++++|
T Consensus       441 G~~v~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l  497 (536)
T 3ni2_A          441 GFQVAPAELEALLIAHPEISDAA-----------------------VVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYI  497 (536)
T ss_dssp             TEEECHHHHHHHHHTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred             CEEECHHHHHHHHHhCCCcceEE-----------------------EEeeecCCCCceeEEEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999999998                       9999999899999999999888788899999999


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       498 ~~~l~  502 (536)
T 3ni2_A          498 SKQVI  502 (536)
T ss_dssp             HTTSC
T ss_pred             HHhcc
Confidence            98764

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.97  E-value=1.3e-31  Score=233.08  Aligned_cols=141  Identities=33%  Similarity=0.494  Sum_probs=133.2

Q ss_pred             CCCcEEEEEC-CCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd-~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|+++++|+| ++|++++.|+.|||+++||+++.|||++|+.|.+.|..+|||+|||++++++||+++|+||.||+||++
T Consensus       368 ~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~  447 (548)
T 2d1s_A          368 VPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYK  447 (548)
T ss_dssp             CTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBT
T ss_pred             CCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEEC
Confidence            5789999999 569999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.|||+.|.+||+|.+++                       |++.+++..++.++++|+++++...+.++++++|
T Consensus       448 G~~v~p~eIE~~l~~~p~V~~a~-----------------------V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~  504 (548)
T 2d1s_A          448 GYQVPPAELESVLLQHPSIFDAG-----------------------VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYV  504 (548)
T ss_dssp             TCCBCHHHHHHHHHTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred             CEEECHHHHHHHHHhCCCccEEE-----------------------EEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHH
Confidence            99999999999999999999998                       9999998889999999998877677889999999


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       505 ~~~l~  509 (548)
T 2d1s_A          505 ASQVS  509 (548)
T ss_dssp             HTTSC
T ss_pred             HHhcc
Confidence            98764

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.97  E-value=2.8e-31  Score=230.48  Aligned_cols=137  Identities=33%  Similarity=0.528  Sum_probs=128.6

Q ss_pred             CcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcEE
Q psy7295           3 LNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGEN   82 (165)
Q Consensus         3 g~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~   82 (165)
                      +.+++|+|++|++++.|+.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++++||+++|+||.||+||++|++
T Consensus       360 ~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~  439 (539)
T 1mdb_A          360 YDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEK  439 (539)
T ss_dssp             TCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCE
T ss_pred             CceEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEE
Confidence            35899999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             EChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhh
Q psy7295          83 IYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK  162 (165)
Q Consensus        83 v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  162 (165)
                      |+|.|||+.|.+||+|.+++                       |++.+++..++.+++++++.. ...+.++++++|+++
T Consensus       440 v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~l~~~  495 (539)
T 1mdb_A          440 VAAEEVENHLLAHPAVHDAA-----------------------MVSMPDQFLGERSCVFIIPRD-EAPKAAELKAFLRER  495 (539)
T ss_dssp             ECHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEESS-SCCCHHHHHHHHHHT
T ss_pred             ECHHHHHHHHHhCCCcceEE-----------------------EEeccccccCceEEEEEEECC-CCCCHHHHHHHHHhC
Confidence            99999999999999999998                       999999888999999999863 456789999999886


Q ss_pred             -h
Q psy7295         163 -A  163 (165)
Q Consensus       163 -l  163 (165)
                       |
T Consensus       496 ~L  497 (539)
T 1mdb_A          496 GL  497 (539)
T ss_dssp             TC
T ss_pred             CC
Confidence             5

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.97  E-value=3.4e-31  Score=228.50  Aligned_cols=141  Identities=30%  Similarity=0.422  Sum_probs=126.7

Q ss_pred             CCCcEEEEECCCCCccCC---CCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCC-CceE
Q psy7295           1 MSLNIVKVVDSDNRMVPY---GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRI-KDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~---g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~-dd~i   76 (165)
                      +||++++|+|++|++++.   |+.|||+|+||+++.|||++|+.|++.|..++||+|||++++++||+++|+||+ |++|
T Consensus       330 ~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~i  409 (505)
T 3nyq_A          330 LPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLI  409 (505)
T ss_dssp             CTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCE
T ss_pred             CCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceE
Confidence            589999999999998886   899999999999999999999999999988999999999999999999999998 5999


Q ss_pred             EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCC-CCCCCHHHH
Q psy7295          77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTE-NSSLTEDEL  155 (165)
Q Consensus        77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~-~~~~~~~~l  155 (165)
                      |++|++|+|.|||+.|.+||+|.+++                       |++.+++..++.+++++++.+ ....+.+++
T Consensus       410 k~~G~~v~~~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l  466 (505)
T 3nyq_A          410 KSGGYKIGAGEIENALLEHPEVREAA-----------------------VTGEPDPDLGERIVAWIVPADPAAPPALGTL  466 (505)
T ss_dssp             EETTEEECHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEESSTTSCCCHHHH
T ss_pred             EeCCEEECHHHHHHHHHHCcCccEEE-----------------------EEeeECCCCCcEEEEEEEECCCCCCCCHHHH
Confidence            99999999999999999999999998                       999999999999999999875 345678999


Q ss_pred             HHHHHhhhc
Q psy7295         156 RGYFKGKAI  164 (165)
Q Consensus       156 ~~~l~~~l~  164 (165)
                      +++|+++|.
T Consensus       467 ~~~l~~~L~  475 (505)
T 3nyq_A          467 ADHVAARLA  475 (505)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHhhCC
Confidence            999998874

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.97  E-value=1.9e-31  Score=231.79  Aligned_cols=141  Identities=30%  Similarity=0.482  Sum_probs=114.1

Q ss_pred             CCCcEEEEEC-CCCCccCCCCceEEEEEeCcccccccCChhhhhhhhc--CCC--eEeeccEEEEecCCcEEEecCCCce
Q psy7295           1 MSLNIVKVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG--EDN--WLRTGDQFVLTKDGFGSVVGRIKDL   75 (165)
Q Consensus         1 ~pg~~v~vvd-~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~--~~~--~~~TGD~~~~~~dG~l~~~GR~dd~   75 (165)
                      +|+++++|+| ++|++++.|+.|||+|+||+++.|||++++.|++.|.  .+|  ||+|||++++|+||+|+|+||.||+
T Consensus       362 ~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~  441 (549)
T 3g7s_A          362 MSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEV  441 (549)
T ss_dssp             CTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC---
T ss_pred             CCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccce
Confidence            5799999999 6799999999999999999999999999999999883  456  9999999999999999999999999


Q ss_pred             EEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCC--CCCCHH
Q psy7295          76 IIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTEN--SSLTED  153 (165)
Q Consensus        76 i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~--~~~~~~  153 (165)
                      ||++|++|+|.|||+.|.+||+|.+++                       |++.+++..++.+++++++.++  ...+.+
T Consensus       442 ik~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~  498 (549)
T 3g7s_A          442 IKYKGYTIAPFELEALLMKHEAVMDVA-----------------------VIGKPDEEAGEVPKAFIVLKPEYRGKVDEE  498 (549)
T ss_dssp             ---------CHHHHHHHTTSTTEEEEE-----------------------EECCCC------CEEEEEECSTTTTSCCHH
T ss_pred             EEECCEEECHHHHHHHHHhCCCeeeEE-----------------------EEeeEccccCceEEEEEEECCCccCcCCHH
Confidence            999999999999999999999999998                       9999999899999999998876  567889


Q ss_pred             HHHHHHHhhhc
Q psy7295         154 ELRGYFKGKAI  164 (165)
Q Consensus       154 ~l~~~l~~~l~  164 (165)
                      +++++|+++|.
T Consensus       499 ~l~~~l~~~L~  509 (549)
T 3g7s_A          499 DIIEWVRERIS  509 (549)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHHhcc
Confidence            99999998874

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.97  E-value=9e-31  Score=225.18  Aligned_cols=140  Identities=34%  Similarity=0.573  Sum_probs=131.3

Q ss_pred             CCCcEEEEECCCC---CccCCCCceEEEEE-eCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295           1 MSLNIVKVVDSDN---RMVPYGQQGELLIR-GYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~~g---~~~~~g~~GeL~v~-g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i   76 (165)
                      +|+++++|+|+++   ++++.|+.|||+++ ||.++.|||++|+.|.+.| .+|||+|||++++++||+++|+||.||+|
T Consensus       327 ~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~i  405 (504)
T 1t5h_X          327 GFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI  405 (504)
T ss_dssp             CTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred             CCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEE
Confidence            4688999999887   99999999999999 8999999999999999999 68999999999999999999999999999


Q ss_pred             EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHH
Q psy7295          77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELR  156 (165)
Q Consensus        77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~  156 (165)
                      |++|++|+|.|||+.|.+||+|.+++                       |++.+++..++.++++|+++++...+.++++
T Consensus       406 k~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~  462 (504)
T 1t5h_X          406 ISGGENIHPSEIERVLGTAPGVTEVV-----------------------VIGLADQRWGQSVTACVVPRLGETLSADALD  462 (504)
T ss_dssp             EETTEEECHHHHHHHHTTSTTEEEEE-----------------------EEEEECSSSSEEEEEEEEECTTCCCCHHHHH
T ss_pred             EECCEEECHHHHHHHHHhCCCcceEE-----------------------EEEeecCCCCcEEEEEEEecCCcCcCHHHHH
Confidence            99999999999999999999999998                       9999999899999999999877677889999


Q ss_pred             HHHHh-hhc
Q psy7295         157 GYFKG-KAI  164 (165)
Q Consensus       157 ~~l~~-~l~  164 (165)
                      ++|++ +|.
T Consensus       463 ~~~~~~~L~  471 (504)
T 1t5h_X          463 TFCRSSELA  471 (504)
T ss_dssp             HHHHTSSCC
T ss_pred             HHHhhccCc
Confidence            99987 653

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.97  E-value=7.9e-32  Score=234.20  Aligned_cols=141  Identities=33%  Similarity=0.517  Sum_probs=66.2

Q ss_pred             CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|+++++|+|++ |++++.|+.|||+|+||+++.|||++|+.|.+.|..+|||+|||++++++||+++++||.||+||++
T Consensus       366 ~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~  445 (550)
T 3rix_A          366 VPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYK  445 (550)
T ss_dssp             CTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----------
T ss_pred             cCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEEC
Confidence            589999999964 9999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.|||+.|.+||+|.+++                       |++.+++..++.+++++++.++...+.++++++|
T Consensus       446 G~~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~  502 (550)
T 3rix_A          446 GYQVAPAELESILLQHPNIFDAG-----------------------VAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYV  502 (550)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEECHHHHHHHHHhCCCcceEE-----------------------EEEeecCCCCceEEEEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999999999                       8999999999999999998877777788899888


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       503 ~~~l~  507 (550)
T 3rix_A          503 ASQVT  507 (550)
T ss_dssp             -----
T ss_pred             HHhcc
Confidence            87764

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.97  E-value=9.8e-31  Score=228.63  Aligned_cols=139  Identities=24%  Similarity=0.302  Sum_probs=129.0

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC------CCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE------DNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~------~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      +|+++++|+|++|++++.|+.|||+|+||+++.|||++|+.|++.|.+      ++||+|||+|++|+||+|+|+||.||
T Consensus       352 ~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d  431 (563)
T 1amu_A          352 IQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDN  431 (563)
T ss_dssp             CTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGG
T ss_pred             eCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccC
Confidence            579999999999999999999999999999999999999999999853      46999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHH
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDE  154 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  154 (165)
                      +||++|++|+|.|||+.|.+||+|.+++                       |++.+++..++.++++++...  ..+.++
T Consensus       432 ~Ik~~G~~V~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~~~~~~a~vv~~~--~~~~~~  486 (563)
T 1amu_A          432 QVKIRGHRVELEEVESILLKHMYISETA-----------------------VSVHKDHQEQPYLCAYFVSEK--HIPLEQ  486 (563)
T ss_dssp             EEEETTEEEEHHHHHHHHTTSTTEEEEE-----------------------EEEEECTTSCEEEEEEEEESS--CCCHHH
T ss_pred             EEEECCEEeCHHHHHHHHHhCCCcceEE-----------------------EEEeecCCCCeEEEEEEEeCC--CCCHHH
Confidence            9999999999999999999999999998                       889898888899999998753  467899


Q ss_pred             HHHHHHhhhc
Q psy7295         155 LRGYFKGKAI  164 (165)
Q Consensus       155 l~~~l~~~l~  164 (165)
                      ++++|+++|.
T Consensus       487 l~~~l~~~L~  496 (563)
T 1amu_A          487 LRQFSSEELP  496 (563)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHhhCc
Confidence            9999998764

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.97  E-value=1.2e-30  Score=228.97  Aligned_cols=140  Identities=30%  Similarity=0.482  Sum_probs=129.8

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEe-----CcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCce
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRG-----YCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDL   75 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g-----~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~   75 (165)
                      +||++++|+|++|+++|.|+.|||+|+|     +.++.|||++|+.|++.| .+|||+|||++++|+||+|+|+||.||+
T Consensus       399 ~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~  477 (580)
T 3etc_A          399 TPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDI  477 (580)
T ss_dssp             CTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSC
T ss_pred             CCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCE
Confidence            5899999999999999999999999997     789999999999999999 5899999999999999999999999999


Q ss_pred             EEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC---H
Q psy7295          76 IIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT---E  152 (165)
Q Consensus        76 i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---~  152 (165)
                      ||++|++|+|.|||+.|.+||+|.+++                       |++.+++..++.+.++|++.++...+   .
T Consensus       478 Ik~~G~~I~p~eIE~~l~~~p~V~~a~-----------------------Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~  534 (580)
T 3etc_A          478 IKTSGYKVGPFEVESALIQHPAVLECA-----------------------ITGVPDPVRGQVIKATIVLTKDYTPSDSLK  534 (580)
T ss_dssp             EEETTEEECHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHH
T ss_pred             EEECCEEECHHHHHHHHHhCCCeeeEE-----------------------EEeeeccCCCcEEEEEEEECCCCCCCHHHH
Confidence            999999999999999999999999998                       99999999999999999998765444   3


Q ss_pred             HHHHHHHHhhhc
Q psy7295         153 DELRGYFKGKAI  164 (165)
Q Consensus       153 ~~l~~~l~~~l~  164 (165)
                      ++|+++|+++|.
T Consensus       535 ~~l~~~l~~~l~  546 (580)
T 3etc_A          535 NELQDHVKNVTA  546 (580)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHhhCC
Confidence            688888888764

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.97  E-value=1.3e-31  Score=233.83  Aligned_cols=141  Identities=24%  Similarity=0.244  Sum_probs=67.4

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC--------CCeEeeccEEEEecCCcEEEecCC
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE--------DNWLRTGDQFVLTKDGFGSVVGRI   72 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~--------~~~~~TGD~~~~~~dG~l~~~GR~   72 (165)
                      +||++++|+|++|++++.|+.|||+|+||+++.|||++++.|++.|..        ++||+|||+|++|+||+|+|+||+
T Consensus       389 ~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~  468 (570)
T 4gr5_A          389 LAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRA  468 (570)
T ss_dssp             CTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-
T ss_pred             eCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEccc
Confidence            579999999999999999999999999999999999999999999853        379999999999999999999999


Q ss_pred             CceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCC-CCCC
Q psy7295          73 KDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTEN-SSLT  151 (165)
Q Consensus        73 dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~-~~~~  151 (165)
                      ||+||++|++|+|.|||+.|.+||+|.+++                       |++.+++..++.+++++++... ...+
T Consensus       469 ~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~~~~~~a~vv~~~~~~~~~  525 (570)
T 4gr5_A          469 DDQVKIRGFRVEPGEVEARLVGHPAVRQAA-----------------------VLAQDSRLGDKQLVAYVVAERADAPPD  525 (570)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEEECcEEeCHHHHHHHHhcCCCcceEE-----------------------EEEeeCCCCCeEEEEEEEecCCCCCcC
Confidence            999999999999999999999999999999                       8888888888999999987543 3456


Q ss_pred             HHHHHHHHHhhhc
Q psy7295         152 EDELRGYFKGKAI  164 (165)
Q Consensus       152 ~~~l~~~l~~~l~  164 (165)
                      .++++++|+++|.
T Consensus       526 ~~~l~~~l~~~l~  538 (570)
T 4gr5_A          526 AAELRRHVAEALP  538 (570)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHhhCc
Confidence            7889998888764

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.97  E-value=8.6e-31  Score=227.46  Aligned_cols=139  Identities=32%  Similarity=0.449  Sum_probs=104.8

Q ss_pred             CCCcEEEEECCCCCccCC--CCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVVDSDNRMVPY--GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~--g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +|+++++|+|++|++++.  ++.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++|+||+++|+||.||+||+
T Consensus       361 ~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~  440 (541)
T 1v25_A          361 IPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKS  440 (541)
T ss_dssp             CTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEE
T ss_pred             CCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeee
Confidence            589999999999999985  368999999999999999999999999987999999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY  158 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  158 (165)
                      +|++|+|.|||+.|.+||+|.+++                       |++.+++..++.+++++++. +...+.++++++
T Consensus       441 ~G~~v~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~~~~~~a~vv~~-~~~~~~~~l~~~  496 (541)
T 1v25_A          441 GGEWISSVDLENALMGHPKVKEAA-----------------------VVAIPHPKWQERPLAVVVPR-GEKPTPEELNEH  496 (541)
T ss_dssp             TTEEEEHHHHHCC----------C-----------------------EEEEECSSSSEEEEECC----------------
T ss_pred             CCEEECHHHHHHHHHhCCCceEEE-----------------------EEEecCCCcCceEEEEEEEC-CCCCCHHHHHHH
Confidence            999999999999999999999999                       99999998899999999876 344566788888


Q ss_pred             HHh-hh
Q psy7295         159 FKG-KA  163 (165)
Q Consensus       159 l~~-~l  163 (165)
                      |++ +|
T Consensus       497 ~~~~~L  502 (541)
T 1v25_A          497 LLKAGF  502 (541)
T ss_dssp             ----CC
T ss_pred             HHhccC
Confidence            877 55

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.97  E-value=2.1e-30  Score=223.99  Aligned_cols=138  Identities=30%  Similarity=0.594  Sum_probs=128.9

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|++|.+++.| .|||+|+||+++.|||++|+.|.+.| .+|||+|||++++++||+++|+||.||+||++|
T Consensus       343 ~~~~~~~i~d~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G  420 (517)
T 3r44_A          343 TMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGG  420 (517)
T ss_dssp             CTTEEEEEECTTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETT
T ss_pred             CCCeEEEEECCCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECC
Confidence            4789999999999999999 89999999999999999999999999 689999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.|||+.|.+||+|.+++                       |++.+++..++.+++++ +.++...+.++++++|+
T Consensus       421 ~~v~p~eIE~~l~~~p~V~~~~-----------------------Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~~l~  476 (517)
T 3r44_A          421 ENVYPAEIESVIIGVPGVSEVA-----------------------VIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCG  476 (517)
T ss_dssp             EEECHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEE-EECTTTCCHHHHHHHHH
T ss_pred             EEECHHHHHHHHHhCCCEeEEE-----------------------EEeccccccCceEEEEE-ECCCCCCCHHHHHHHHH
Confidence            9999999999999999999998                       99999998899998888 55566788999999999


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       477 ~~L~  480 (517)
T 3r44_A          477 TRLA  480 (517)
T ss_dssp             HHSC
T ss_pred             HhCC
Confidence            8874

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.97  E-value=3.2e-31  Score=228.05  Aligned_cols=140  Identities=34%  Similarity=0.592  Sum_probs=68.6

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCC--CceEEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRI--KDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~--dd~i~~   78 (165)
                      +|+++++|+|++|++++.|+.|||+|+||+++.|||++|+.|.+.| .+|||+|||++++++||+++|+||.  ||+||+
T Consensus       327 ~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~  405 (509)
T 3ivr_A          327 LFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT  405 (509)
T ss_dssp             CTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC--------
T ss_pred             CCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE
Confidence            5799999999999999999999999999999999999999999999 4899999999999999999999999  999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY  158 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  158 (165)
                      +|++|+|.+||+.|.+||+|.+++                       |++.+++..++.+++++++.++...+.++++++
T Consensus       406 ~G~~v~p~eiE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  462 (509)
T 3ivr_A          406 GGENVYPAEVEGALKQHPAIADAV-----------------------VIGVPDPQWSEAIKAVCVCKPGESIAADALAEF  462 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEECHHHHHHHHHhCCCceeEE-----------------------EEeccccccCcEEEEEEEeCCCCCCCHHHHHHH
Confidence            999999999999999999999999                       899999888999999999887777778889999


Q ss_pred             HHhhhc
Q psy7295         159 FKGKAI  164 (165)
Q Consensus       159 l~~~l~  164 (165)
                      |+++|.
T Consensus       463 l~~~L~  468 (509)
T 3ivr_A          463 VASLIA  468 (509)
T ss_dssp             ------
T ss_pred             HHhhCc
Confidence            888764

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.97  E-value=4.5e-31  Score=229.37  Aligned_cols=136  Identities=38%  Similarity=0.529  Sum_probs=70.4

Q ss_pred             CCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcE
Q psy7295           2 SLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE   81 (165)
Q Consensus         2 pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~   81 (165)
                      |+++++|+|++|++++.|+.|||+|+||+++.|||++|+.|++.|..+|||+|||++++++||+++|+||.||+||++|+
T Consensus       368 ~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~  447 (544)
T 3o83_A          368 SDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGE  447 (544)
T ss_dssp             TTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC--------
T ss_pred             CCcEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCE
Confidence            68899999999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             EEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q psy7295          82 NIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG  161 (165)
Q Consensus        82 ~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  161 (165)
                      +|+|.|||+.|.+||+|.+++                       |++.+++..++.++++++..+ ...+.+++++++++
T Consensus       448 ~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~~~~  503 (544)
T 3o83_A          448 KIASEEIEKLILLHPEVMHAA-----------------------LVAIVDEQFGEKSCAFIVSRN-PELKAVVLRRHLME  503 (544)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EECHHHHHHHHHhCCCccEEE-----------------------EEeccCCCCCceEEEEEEeCC-CCCCHHHHHHHHHh
Confidence            999999999999999999999                       889999888999999998765 34566777777776

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.97  E-value=5.1e-30  Score=225.87  Aligned_cols=135  Identities=30%  Similarity=0.514  Sum_probs=127.9

Q ss_pred             CCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcE
Q psy7295           2 SLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE   81 (165)
Q Consensus         2 pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~   81 (165)
                      |+++++|+|++|+++|.|+.|||+|+||++++|||++|+.|++.|..++||+|||++++++||+++|+||.||+||++|+
T Consensus       363 ~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~  442 (617)
T 3rg2_A          363 PDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGE  442 (617)
T ss_dssp             TTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTE
T ss_pred             CCceEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCE
Confidence            57899999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             EEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q psy7295          82 NIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG  161 (165)
Q Consensus        82 ~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  161 (165)
                      +|+|.|||+.|.+||+|.+++                       |++.+++..++.++++++..+  ..+.+++++++++
T Consensus       443 ri~~~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~  497 (617)
T 3rg2_A          443 KIAAEEIENLLLRHPAVIYAA-----------------------LVSMEDELMGEKSCAYLVVKE--PLRAVQVRRFLRE  497 (617)
T ss_dssp             EEEHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEESS--CCCHHHHHHHHHT
T ss_pred             EeCHHHHHHHHHhCCCeeEEE-----------------------EEeccCcccCeeEEEEEEeCC--CCCHHHHHHHHHh
Confidence            999999999999999999998                       888888888899999999865  4678899999987

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.97  E-value=3e-30  Score=229.13  Aligned_cols=141  Identities=24%  Similarity=0.321  Sum_probs=129.2

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEe--CcccccccCChhhhhhhhcC--CCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRG--YCNMLRYWGNEEKTKEILGE--DNWLRTGDQFVLTKDGFGSVVGRIKDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g--~~~~~gY~~~~~~t~~~~~~--~~~~~TGD~~~~~~dG~l~~~GR~dd~i   76 (165)
                      +||++++|+|++|++++.|+.|||+|+|  |+++.|||++++.+.+.|..  +|||+|||++++|+||+++|+||.||+|
T Consensus       441 ~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I  520 (652)
T 1pg4_A          441 FFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL  520 (652)
T ss_dssp             CTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEE
T ss_pred             cCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEE
Confidence            5799999999999999999999999999  79999999999999887743  7899999999999999999999999999


Q ss_pred             EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC---HH
Q psy7295          77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT---ED  153 (165)
Q Consensus        77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---~~  153 (165)
                      |++|+||+|.|||+.|.+||+|.+|+                       |++.+++..++.+++||+++++...+   .+
T Consensus       521 k~~G~rI~~~eIE~~l~~~p~V~ea~-----------------------Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~  577 (652)
T 1pg4_A          521 NVSGHRLGTAEIESALVAHPKIAEAA-----------------------VVGIPHAIKGQAIYAYVTLNHGEEPSPELYA  577 (652)
T ss_dssp             EETTEEEEHHHHHHHHHHSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHHH
T ss_pred             EECCEEECHHHHHHHHHhCCCcceEE-----------------------EEEEEcCCCCeEEEEEEEECCCCCCCHHHHH
Confidence            99999999999999999999999998                       99999988899999999998765544   47


Q ss_pred             HHHHHHHhhhc
Q psy7295         154 ELRGYFKGKAI  164 (165)
Q Consensus       154 ~l~~~l~~~l~  164 (165)
                      +|+++|+++|.
T Consensus       578 ~l~~~l~~~l~  588 (652)
T 1pg4_A          578 EVRNWVRKEIG  588 (652)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhCC
Confidence            88888888763

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.97  E-value=1.2e-29  Score=218.61  Aligned_cols=139  Identities=22%  Similarity=0.200  Sum_probs=125.0

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcC---CCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE---DNWLRTGDQFVLTKDGFGSVVGRIKDLII   77 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~---~~~~~TGD~~~~~~dG~l~~~GR~dd~i~   77 (165)
                      +|+++++|+|++|++++.|+.|||+|+||+++.|||++|+.|++.|..   .+||+|||++++ +||+++++||.||+||
T Consensus       324 ~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik  402 (511)
T 3e7w_A          324 KPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIK  402 (511)
T ss_dssp             CTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEE
T ss_pred             eCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEE
Confidence            489999999999999999999999999999999999999999999842   237999999999 5999999999999999


Q ss_pred             ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCH----H
Q psy7295          78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTE----D  153 (165)
Q Consensus        78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~----~  153 (165)
                      ++|++|+|.|||+.|.+||+|.+++                       |++.+++..++.+++++++.++...+.    +
T Consensus       403 ~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~  459 (511)
T 3e7w_A          403 LHGYRMELEEIEFHVRQSQYVRSAV-----------------------VIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTS  459 (511)
T ss_dssp             ETTEEEEHHHHHHHHHHSTTEEEEE-----------------------EEEECSSSSCCEEEEEEEECCCCCSSHHHHHH
T ss_pred             ECCEEeCHHHHHHHHHhCCCcceEE-----------------------EEEEcCCCCceEEEEEEEeccccccchhhHHH
Confidence            9999999999999999999999998                       889888888999999999877654443    5


Q ss_pred             HHHHHHHhhh
Q psy7295         154 ELRGYFKGKA  163 (165)
Q Consensus       154 ~l~~~l~~~l  163 (165)
                      +++++|+++|
T Consensus       460 ~l~~~l~~~L  469 (511)
T 3e7w_A          460 AIKKELAASL  469 (511)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHhhC
Confidence            6777777665

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.96  E-value=2.8e-30  Score=222.51  Aligned_cols=140  Identities=21%  Similarity=0.234  Sum_probs=117.5

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhh---cCCCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEIL---GEDNWLRTGDQFVLTKDGFGSVVGRIKDLII   77 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~---~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~   77 (165)
                      +|+++++|+|++|++++.|+.|||+|+||+++.|||++++.|++.|   +.++||+|||+|++|+||++++.||.||+||
T Consensus       328 ~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~  407 (521)
T 3l8c_A          328 KPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIK  407 (521)
T ss_dssp             CTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC
T ss_pred             cCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEe
Confidence            4789999999999999999999999999999999999999999998   4568999999999999999999999999999


Q ss_pred             ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCC-CCceEEEEEEeCCCCCCC-----
Q psy7295          78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDER-MGEEIGASIRLTENSSLT-----  151 (165)
Q Consensus        78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~a~v~~~~~~~~~-----  151 (165)
                      ++|++|+|.+||+.|.+||+|.+++                       |++.+++. .++.++++++++++....     
T Consensus       408 ~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~  464 (521)
T 3l8c_A          408 YAGYRIELEDVSQQLNQSPMVASAV-----------------------AVPRYNKEHKVQNLLAYIVVKDGVKERFDREL  464 (521)
T ss_dssp             -----CBHHHHHHHHHTSTTEEEEE-----------------------EECCCSSSCC---CEEEEEECTTSGGGCSSHH
T ss_pred             ECCEEeCHHHHHHHHHcCCCcceEE-----------------------EEEeecCCCCceEEEEEEEecCccccccccch
Confidence            9999999999999999999999998                       88776544 468899999987754321     


Q ss_pred             --HHHHHHHHHhhh
Q psy7295         152 --EDELRGYFKGKA  163 (165)
Q Consensus       152 --~~~l~~~l~~~l  163 (165)
                        .++++++|+++|
T Consensus       465 ~~~~~l~~~l~~~l  478 (521)
T 3l8c_A          465 ELTKAIKASVKDHM  478 (521)
T ss_dssp             HHHHHHHHHSGGGS
T ss_pred             hhHHHHHHHHHhhC
Confidence              467888887765

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.96  E-value=1.3e-29  Score=218.04  Aligned_cols=139  Identities=22%  Similarity=0.246  Sum_probs=125.6

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhc---CCCeEeeccEEEEecCCcEEEecCCCceEE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG---EDNWLRTGDQFVLTKDGFGSVVGRIKDLII   77 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~---~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~   77 (165)
                      +|+++++|+|++|++++.|+.|||+|+||+++.|||++|+.|++.|.   .++||+|||++++ +||+++|.||.||+||
T Consensus       325 ~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik  403 (512)
T 3fce_A          325 KSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIK  403 (512)
T ss_dssp             CTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEE
T ss_pred             cCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEE
Confidence            47899999999999999999999999999999999999999999983   4679999999999 7999999999999999


Q ss_pred             ECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCH----H
Q psy7295          78 RGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTE----D  153 (165)
Q Consensus        78 ~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~----~  153 (165)
                      ++|++|+|.+||+.|.+||+|.+++                       |++.+++..++.+++++++.+....+.    +
T Consensus       404 ~~G~~v~p~eIE~~l~~~p~V~~a~-----------------------vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~  460 (512)
T 3fce_A          404 LHGYRMELEEIEHHLRACSYVEGAV-----------------------IVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTS  460 (512)
T ss_dssp             ETTEEECHHHHHHHHHHSTTEEEEE-----------------------EEEEEETTEEEEEEEEEEECSCCCSSHHHHHH
T ss_pred             ECCEEECHHHHHHHHHhCCCcceEE-----------------------EEEEecCCCceEEEEEEecCCccccchhhhHH
Confidence            9999999999999999999999998                       889988888899999999876544443    4


Q ss_pred             HHHHHHHhhh
Q psy7295         154 ELRGYFKGKA  163 (165)
Q Consensus       154 ~l~~~l~~~l  163 (165)
                      +++++|+++|
T Consensus       461 ~l~~~l~~~L  470 (512)
T 3fce_A          461 AIKKELNERL  470 (512)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHhhC
Confidence            6777777665

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.96  E-value=6.2e-30  Score=223.82  Aligned_cols=140  Identities=28%  Similarity=0.389  Sum_probs=126.9

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEE-----eCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCce
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIR-----GYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDL   75 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~-----g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~   75 (165)
                      +|+++++|+|++|+++|.|+.|||+|+     ||+++.|||++|+.|.+.| .++||+|||++++|+||+++|+||.||+
T Consensus       380 ~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~  458 (570)
T 3c5e_A          380 ASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDI  458 (570)
T ss_dssp             CTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred             CCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCE
Confidence            478999999999999999999999999     9999999999999999998 5799999999999999999999999999


Q ss_pred             EEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC-C----
Q psy7295          76 IIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS-L----  150 (165)
Q Consensus        76 i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~-~----  150 (165)
                      ||++|++|+|.|||+.|.+||+|.+++                       |++.+++..++.++++|++.++.. .    
T Consensus       459 Ik~~G~~V~p~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~  515 (570)
T 3c5e_A          459 INSSGYRIGPSEVENALMEHPAVVETA-----------------------VISSPDPVRGEVVKAFVVLASQFLSHDPEQ  515 (570)
T ss_dssp             EEETTEEECHHHHHHHHHTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECGGGTTSCHHH
T ss_pred             EEECCEEECHHHHHHHHHhCCCcceEE-----------------------EEeeeCCCCCeEEEEEEEECCcccCcchHH
Confidence            999999999999999999999999998                       999998888999999999865431 1    


Q ss_pred             CHHHHHHHHHhhhc
Q psy7295         151 TEDELRGYFKGKAI  164 (165)
Q Consensus       151 ~~~~l~~~l~~~l~  164 (165)
                      ..++++++|+++|.
T Consensus       516 ~~~~l~~~l~~~L~  529 (570)
T 3c5e_A          516 LTKELQQHVKSVTA  529 (570)
T ss_dssp             HHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhCc
Confidence            24678888877653

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.96  E-value=3.1e-30  Score=237.54  Aligned_cols=141  Identities=32%  Similarity=0.497  Sum_probs=71.4

Q ss_pred             CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +|+++++|+|++ |++++.|+.|||+|+||.++.|||++|+.|++.|..++||+|||++++++||+++|+||.||+||++
T Consensus       408 ~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~  487 (979)
T 3tsy_A          408 VRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYK  487 (979)
T ss_dssp             CSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----
T ss_pred             cCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEEC
Confidence            579999999965 9999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.|||+.|.+||+|.+++                       |++.+++..++.++++++..++...+.++++++|
T Consensus       488 G~~v~~~eIE~~l~~~p~V~~~~-----------------------Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l  544 (979)
T 3tsy_A          488 GFQVAPAELEALLIGHPDITDVA-----------------------VVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFV  544 (979)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEECHHHHHHHHHhCCCcceEE-----------------------EEEecccCCCcEEEEEEEECCCCCCCHHHHHHHH
Confidence            99999999999999999999999                       8898888889999999998777677788899998


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       545 ~~~l~  549 (979)
T 3tsy_A          545 SKQVV  549 (979)
T ss_dssp             -----
T ss_pred             HHhcc
Confidence            88764

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.96  E-value=2.8e-29  Score=216.86  Aligned_cols=139  Identities=27%  Similarity=0.491  Sum_probs=121.6

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|++|+++|.|+.|||+|+||+++.|||++++.|.+.| .++||+|||++++++||++++.||.||+||++|
T Consensus       358 ~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G  436 (529)
T 2v7b_A          358 VPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSG  436 (529)
T ss_dssp             CTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC---
T ss_pred             CCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEECC
Confidence            5799999999999999999999999999999999999999999998 478999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCC---CHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSL---TEDELRG  157 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~---~~~~l~~  157 (165)
                      ++|+|.+||+.|.+||+|.+++                       |++. ++..++.+++++++.++...   ..+++++
T Consensus       437 ~~v~p~eIE~~l~~~p~V~~~~-----------------------vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~  492 (529)
T 2v7b_A          437 QYVSPVEVEMVLVQHDAVLEAA-----------------------VVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKA  492 (529)
T ss_dssp             -CBCHHHHHHHHTTSTTEEEEE-----------------------EEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             EEECHHHHHHHHHhCCCcceEE-----------------------EEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHH
Confidence            9999999999999999999998                       8887 66677889999998765321   2467888


Q ss_pred             HHHhhhc
Q psy7295         158 YFKGKAI  164 (165)
Q Consensus       158 ~l~~~l~  164 (165)
                      +|+++|.
T Consensus       493 ~l~~~L~  499 (529)
T 2v7b_A          493 FVKDRLA  499 (529)
T ss_dssp             HHHTTSC
T ss_pred             HHHhhcc
Confidence            8887764

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.96  E-value=1.6e-28  Score=232.08  Aligned_cols=139  Identities=27%  Similarity=0.338  Sum_probs=128.3

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhc------CCCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG------EDNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~------~~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      +||++++|+|++++++|.|++|||+|+|+++++|||++|+.|++.|.      .++||+|||++++++||.|+|+||.|+
T Consensus       783 ~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~  862 (1304)
T 2vsq_A          783 ISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDD  862 (1304)
T ss_dssp             CTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGG
T ss_pred             eCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCC
Confidence            57999999999999999999999999999999999999999999984      346999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHH
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDE  154 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  154 (165)
                      +||++|+||+|.|||+.|.+||+|.+|+                       |++.+++..++.++++++...  ..+.++
T Consensus       863 qvki~G~rie~~eIE~~l~~~p~V~~a~-----------------------V~~~~~~~~~~~l~a~vv~~~--~~~~~~  917 (1304)
T 2vsq_A          863 QVKIRGHRIELEEIEKQLQEYPGVKDAV-----------------------VVADRHESGDASINAYLVNRT--QLSAED  917 (1304)
T ss_dssp             EEEETTEEEEHHHHHHHHHHSSSCCEEE-----------------------EEEECCSSSCCEEEEEEECSS--SSCHHH
T ss_pred             EEEECCEeeCHHHHHHHHHhCCCCceEE-----------------------EEEEecCCCCEEEEEEEeCCC--CCCHHH
Confidence            9999999999999999999999999998                       888888888899999998754  567899


Q ss_pred             HHHHHHhhhc
Q psy7295         155 LRGYFKGKAI  164 (165)
Q Consensus       155 l~~~l~~~l~  164 (165)
                      ++++|+++|-
T Consensus       918 l~~~l~~~Lp  927 (1304)
T 2vsq_A          918 VKAHLKKQLP  927 (1304)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHhCh
Confidence            9999988763

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.96  E-value=5.8e-29  Score=221.50  Aligned_cols=141  Identities=21%  Similarity=0.285  Sum_probs=125.0

Q ss_pred             CCCcEEEEECC-CCCccCC-CCceEEEEEe--CcccccccCChhhhhhhhcC--CCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDS-DNRMVPY-GQQGELLIRG--YCNMLRYWGNEEKTKEILGE--DNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~-g~~GeL~v~g--~~~~~gY~~~~~~t~~~~~~--~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      +||++++|+|+ +|++++. |+.|||+|+|  |+++.|||++++.+.+.|..  +|||+|||++++|+||+++|+||.||
T Consensus       448 ~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd  527 (663)
T 1ry2_A          448 FFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDD  527 (663)
T ss_dssp             CTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTS
T ss_pred             cCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCC
Confidence            57999999999 8999998 9999999999  58999999999999888754  78999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC---C-
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS---L-  150 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~---~-  150 (165)
                      +||++|+||+|.|||+.|.+||.|.+++                       |++.+++..++.+++||+++++..   . 
T Consensus       528 ~Ik~~G~rI~~~eIE~~l~~~p~V~ea~-----------------------Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~  584 (663)
T 1ry2_A          528 VVNVSGHRLSTAEIEAAIIEDPIVAECA-----------------------VVGFNDDLTGQAVAAFVVLKNKSSWSTAT  584 (663)
T ss_dssp             CBCSSSCCBCHHHHHHHHHSSTTEEEEE-----------------------EECCCCCTTSCCCEEEEEEC---------
T ss_pred             EEEECCEEcCHHHHHHHHHhCCCcceEE-----------------------EEEEecCCCCeEEEEEEEEcCCCcccccc
Confidence            9999999999999999999999999998                       999999888999999999876543   2 


Q ss_pred             C------HHHHHHHHHhhhc
Q psy7295         151 T------EDELRGYFKGKAI  164 (165)
Q Consensus       151 ~------~~~l~~~l~~~l~  164 (165)
                      +      .++|+++|+++|.
T Consensus       585 ~~~~~~l~~~l~~~l~~~L~  604 (663)
T 1ry2_A          585 DDELQDIKKHLVFTVRKDIG  604 (663)
T ss_dssp             ---CCSHHHHHHHHHHHHTC
T ss_pred             chhHHHHHHHHHHHHHHhCC
Confidence            1      4778888887764

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.95  E-value=5.5e-28  Score=213.86  Aligned_cols=119  Identities=18%  Similarity=0.196  Sum_probs=107.5

Q ss_pred             CCCcEEEEECCCCCc-cCCCCceEEEEEeCcccccccCChhhhhhhhcCC-------CeEeeccEEEEecCCcEEEecCC
Q psy7295           1 MSLNIVKVVDSDNRM-VPYGQQGELLIRGYCNMLRYWGNEEKTKEILGED-------NWLRTGDQFVLTKDGFGSVVGRI   72 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~-~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~-------~~~~TGD~~~~~~dG~l~~~GR~   72 (165)
                      +||++++|+|+++++ +|.|+.|||+|+||+++.|||++|+.|++.|..+       +||+|||++++++||+|+|+||.
T Consensus       339 ~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~  418 (620)
T 4dg8_A          339 IAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRG  418 (620)
T ss_dssp             CTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECS
T ss_pred             ccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccC
Confidence            579999999999887 8999999999999999999999999999999543       79999999999999999999999


Q ss_pred             CceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEE
Q psy7295          73 KDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASI  142 (165)
Q Consensus        73 dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v  142 (165)
                      ||+||++|+||+|.|||+.|.+||+|.+|+                       |++.+++..++.+++++
T Consensus       419 dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~-----------------------Vv~~~~~~~~~lv~~~~  465 (620)
T 4dg8_A          419 DGQVKLNGYRLDLPALEQRFRRQPGILDCA-----------------------LLVRERNGVKQLLCAWT  465 (620)
T ss_dssp             SSEEEETTEEEEHHHHHHHHHTSTTEEEEE-----------------------EEEEEETTEEEEEEEEE
T ss_pred             CCEEEECCEEcCHHHHHHHHHhCCCccEEE-----------------------EEEEeCCCceEEEEEEe
Confidence            999999999999999999999999999998                       77777665455554444

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.95  E-value=1.1e-27  Score=205.42  Aligned_cols=132  Identities=30%  Similarity=0.437  Sum_probs=121.2

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGG   80 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G   80 (165)
                      +|+++++|+|++     .|+.|||+|+||.++.|||++++.|.. | .+|||+|||++++++||+++++||.||+||++|
T Consensus       333 ~~~~~~~i~d~~-----~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G  405 (501)
T 3ipl_A          333 SANVDVKIKNPN-----KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGG  405 (501)
T ss_dssp             CTTCEEEEESCC-----SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSS
T ss_pred             CCCcEEEEecCC-----CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEECC
Confidence            578999999986     467899999999999999999999887 5 689999999999999999999999999999999


Q ss_pred             EEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHH
Q psy7295          81 ENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFK  160 (165)
Q Consensus        81 ~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  160 (165)
                      ++|+|.+||+.|.+||+|.+++                       |++.+++..++.++++++..  ...+.++++++|+
T Consensus       406 ~~v~p~eiE~~l~~~p~V~~~~-----------------------vv~~~~~~~g~~~~a~v~~~--~~~~~~~l~~~l~  460 (501)
T 3ipl_A          406 ENIYPYQIETVAKQFPGISDAV-----------------------CVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYLS  460 (501)
T ss_dssp             CEECHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEES--SCCCHHHHHHHHH
T ss_pred             EEECHHHHHHHHHhCCCccEEE-----------------------EEEEecccCCceEEEEEEeC--CCCCHHHHHHHHH
Confidence            9999999999999999999998                       99999998899999999864  3568899999999


Q ss_pred             hhhc
Q psy7295         161 GKAI  164 (165)
Q Consensus       161 ~~l~  164 (165)
                      ++|.
T Consensus       461 ~~L~  464 (501)
T 3ipl_A          461 KHLA  464 (501)
T ss_dssp             HHSC
T ss_pred             hhCc
Confidence            8874

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.95  E-value=3e-28  Score=211.70  Aligned_cols=141  Identities=16%  Similarity=0.210  Sum_probs=65.3

Q ss_pred             CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcC-CCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE-DNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~-~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +|+++++|+|++ +.+++.|+.|||+|+||+++.|||++|+.|...+.+ ++||+|||+|++|+||+|+|+||.||+||+
T Consensus       353 ~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~  432 (562)
T 3ite_A          353 LGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKV  432 (562)
T ss_dssp             CTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC------
T ss_pred             CCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeE
Confidence            478999999976 888999999999999999999999999988766532 349999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcC-CChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCC-------
Q psy7295          79 GGENIYPSEIEDFLTTH-PDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSL-------  150 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~-~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~-------  150 (165)
                      +|+||+|.|||+.|.++ |.+.+++                       |++.+++..++...++++...+...       
T Consensus       433 ~G~~v~p~eIE~~l~~~~~~~~~~~-----------------------v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  489 (562)
T 3ite_A          433 RGQRLELGEVSEVIRSLSPTDIDVV-----------------------TLLLNHPGTSKQFLVSFVASSGAAVRGELRWI  489 (562)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEECHHHHHHHHHhcCCCceeEE-----------------------EEEecCCCCcceEEEEEEeccccccccccccc
Confidence            99999999999999998 6777776                       7777777766665555554332222       


Q ss_pred             ------CHHHHHHHHHhhhc
Q psy7295         151 ------TEDELRGYFKGKAI  164 (165)
Q Consensus       151 ------~~~~l~~~l~~~l~  164 (165)
                            ..++|+++|+++|.
T Consensus       490 ~~~~~~~~~~l~~~~~~~L~  509 (562)
T 3ite_A          490 NENYKEINNSLRQACEQTLP  509 (562)
T ss_dssp             --------------------
T ss_pred             ccchhhHHHHHHHHHHhhCC
Confidence                  23478888887764

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.94  E-value=9.3e-28  Score=209.09  Aligned_cols=135  Identities=27%  Similarity=0.384  Sum_probs=117.1

Q ss_pred             EEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcC------CC--eEeeccEEEEecCCcEEEecCCCce
Q psy7295           5 IVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGE------DN--WLRTGDQFVLTKDGFGSVVGRIKDL   75 (165)
Q Consensus         5 ~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~------~~--~~~TGD~~~~~~dG~l~~~GR~dd~   75 (165)
                      .++|+|++ +.+++.|+.|||+|+||+++.|||++|+.|++.|.+      +|  ||+|||+|+++ +|+|+|+||.||+
T Consensus       382 ~v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~  460 (590)
T 3kxw_A          382 EVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDL  460 (590)
T ss_dssp             EEEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCH
T ss_pred             CeEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccce
Confidence            38999988 899999999999999999999999999999999954      24  99999999999 9999999999999


Q ss_pred             EEECcEEEChHHHHHHH-hcCCChH--HhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCC--CC
Q psy7295          76 IIRGGENIYPSEIEDFL-TTHPDIL--EAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENS--SL  150 (165)
Q Consensus        76 i~~~G~~v~~~eIE~~l-~~~~~v~--~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~  150 (165)
                      ||++|++|+|.|||+.| ..+|.|.  +++                       |++.+++. ++.+++++++.++.  ..
T Consensus       461 Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~-----------------------v~~~~~~~-~~~~~~~v~~~~~~~~~~  516 (590)
T 3kxw_A          461 IIIYGKNHYPQDIEFSLMHSPLHHVLGKCA-----------------------AFVIQEEH-EYKLTVMCEVKNRFMDDV  516 (590)
T ss_dssp             HHHHHHTTHHHHHHHHHHHSGGGGGEEEEE-----------------------EEEEEETT-EEEEEEEEEESCTTCCHH
T ss_pred             EEECCEecCHHHHHHHHHhcCccccCccEE-----------------------EEEecCCC-CceEEEEEEeccccccch
Confidence            99999999999999999 8889998  676                       78887765 67888888887653  34


Q ss_pred             CHHHHHHHHHhhhc
Q psy7295         151 TEDELRGYFKGKAI  164 (165)
Q Consensus       151 ~~~~l~~~l~~~l~  164 (165)
                      +.+++.++|+++|.
T Consensus       517 ~~~~l~~~l~~~l~  530 (590)
T 3kxw_A          517 AQDNLFNEIFELVY  530 (590)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            56778888877653

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.89  E-value=7.4e-23  Score=172.79  Aligned_cols=126  Identities=22%  Similarity=0.370  Sum_probs=108.0

Q ss_pred             CCcEEEEEC-CCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCC------c---EEEecC
Q psy7295           2 SLNIVKVVD-SDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG------F---GSVVGR   71 (165)
Q Consensus         2 pg~~v~vvd-~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG------~---l~~~GR   71 (165)
                      +++.++|+| ++|++++.|+.|||+|+|+.            ...| ..+||+|||+++++++|      +   +++.||
T Consensus       263 ~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR  329 (436)
T 3qov_A          263 DCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGR  329 (436)
T ss_dssp             TTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCB
T ss_pred             CceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCc
Confidence            588999999 56999999999999999842            2223 57899999999999998      5   699999


Q ss_pred             CCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC
Q psy7295          72 IKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT  151 (165)
Q Consensus        72 ~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~  151 (165)
                      .||+||++|++|+|.+||++|.+||+|.+++                       +++.+++..++.+.++|+++ +...+
T Consensus       330 ~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~-----------------------vv~~~~~~~~~~l~a~v~~~-~~~~~  385 (436)
T 3qov_A          330 SDDMFIIKGVNIFPMQVEKILVQFPELGSNY-----------------------LITLETVNNQDEMIVEVELS-DLSTD  385 (436)
T ss_dssp             SSSCEEETTEEECHHHHHHHHTTCTTEEEEE-----------------------EEEEEEETTEEEEEEEEEEC-TTCCC
T ss_pred             cCCEEEECCEEECHHHHHHHHHhCcCcCCcE-----------------------EEEEEcCCCCcEEEEEEEEc-Ccccc
Confidence            9999999999999999999999999999988                       88888887888999999987 54444


Q ss_pred             ----HHHHHHHHHhhhc
Q psy7295         152 ----EDELRGYFKGKAI  164 (165)
Q Consensus       152 ----~~~l~~~l~~~l~  164 (165)
                          .+++.++|+++|.
T Consensus       386 ~~~~~~~l~~~l~~~l~  402 (436)
T 3qov_A          386 NYIELEKIRRDIIRQLK  402 (436)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHH
Confidence                5677777776653

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.88  E-value=1e-22  Score=171.96  Aligned_cols=126  Identities=21%  Similarity=0.290  Sum_probs=106.8

Q ss_pred             CCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEec-CCcE-----EEecCCCc
Q psy7295           2 SLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK-DGFG-----SVVGRIKD   74 (165)
Q Consensus         2 pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~-dG~l-----~~~GR~dd   74 (165)
                      +++.++|+|++ |+++|.|+.|||+++|.            +.+.| ..+||+|||++++++ +|++     ++.||.||
T Consensus       268 ~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d  334 (437)
T 2y27_A          268 DHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDD  334 (437)
T ss_dssp             TTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGG
T ss_pred             CceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCC
Confidence            67899999975 99999999999999983            22333 568999999999999 6985     89999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC---CC
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS---LT  151 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~---~~  151 (165)
                      +||++|++|+|.+||++|.+||+|.+++                       +++.+++..++.++++|++.++..   .+
T Consensus       335 ~i~~~G~~v~p~eiE~~l~~~p~V~~~~-----------------------vv~~~~~~~~~~l~a~v~~~~~~~~~~~~  391 (437)
T 2y27_A          335 MMIVRGVNVFPTQIEEQLLKQRALAPHY-----------------------QIVLTKEGPLDVLTLNVEPCPETAPDTAA  391 (437)
T ss_dssp             CEEETTEEECHHHHHHHHTTCTTBCSCC-----------------------EEEEEEETTEEEEEEEECBCTTTTTCHHH
T ss_pred             eEEECCeEECHHHHHHHHHhCcCcCccE-----------------------EEEEeecCCCceEEEEEEECCCccchhhh
Confidence            9999999999999999999999999988                       888877777889999999876543   23


Q ss_pred             HHHHHHHHHhhh
Q psy7295         152 EDELRGYFKGKA  163 (165)
Q Consensus       152 ~~~l~~~l~~~l  163 (165)
                      .++++++|+++|
T Consensus       392 ~~~l~~~l~~~l  403 (437)
T 2y27_A          392 IQVAKQALAYDI  403 (437)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            467777777765

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.87  E-value=1.3e-22  Score=171.51  Aligned_cols=126  Identities=21%  Similarity=0.349  Sum_probs=106.0

Q ss_pred             CCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecC-CcE-----EEecCCCc
Q psy7295           2 SLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD-GFG-----SVVGRIKD   74 (165)
Q Consensus         2 pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~d-G~l-----~~~GR~dd   74 (165)
                      +++.++|+|++ |++++.|+.|||+|+|.            +.+.| ..+||+|||+++++++ |++     ++.||.||
T Consensus       270 ~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d  336 (443)
T 2y4o_A          270 DHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDD  336 (443)
T ss_dssp             TTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSC
T ss_pred             CCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCccccccCC
Confidence            57899999965 99999999999999983            22233 4689999999999999 987     89999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCC--C---CC
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTE--N---SS  149 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~--~---~~  149 (165)
                      +||++|++|+|.+||++|.+||+|.+++                       +++.+++..++.+.++|++.+  +   ..
T Consensus       337 ~i~~~G~~v~p~eiE~~l~~~p~V~~~~-----------------------vv~~~~~~~~~~~~a~v~~~~~~~~~~~~  393 (443)
T 2y4o_A          337 MLIVRGVNVFPSQIEEIVVALPLLSGQF-----------------------QITLSRDGHMDRLDLAVELRSEAAASVTD  393 (443)
T ss_dssp             CEEETTEEECHHHHHHHHHTSTTEEEEE-----------------------EEEEEEETTEEEEEEEEEECHHHHTTCCH
T ss_pred             eEEECCEEECHHHHHHHHHhCcCcCccE-----------------------EEEEecCCCCceEEEEEEECCcccccchh
Confidence            9999999999999999999999999988                       777777767788999999865  2   22


Q ss_pred             CCHHHHHHHHHhhh
Q psy7295         150 LTEDELRGYFKGKA  163 (165)
Q Consensus       150 ~~~~~l~~~l~~~l  163 (165)
                      .+.++++++|+++|
T Consensus       394 ~~~~~l~~~l~~~l  407 (443)
T 2y4o_A          394 GERAALARELQHRI  407 (443)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            34567788887765

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.81  E-value=1e-20  Score=157.16  Aligned_cols=125  Identities=14%  Similarity=0.144  Sum_probs=100.6

Q ss_pred             cCCCCceEEEEEeCcccccccCChhhhh-hhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcEEEChHHHHHHHh-
Q psy7295          16 VPYGQQGELLIRGYCNMLRYWGNEEKTK-EILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLT-   93 (165)
Q Consensus        16 ~~~g~~GeL~v~g~~~~~gY~~~~~~t~-~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~~~eIE~~l~-   93 (165)
                      ++.+..|++++.+|++..+|.++++... ..+..++||+|||++++|++| ++|+||.||+||++|+||+|.|||+.|. 
T Consensus       193 ~~~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~  271 (358)
T 4gs5_A          193 LNGPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAA  271 (358)
T ss_dssp             CSSTTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred             ccccccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHH
Confidence            4456678888888888888887766543 234578999999999999988 6678999999999999999999998874 


Q ss_pred             --cCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhhc
Q psy7295          94 --THPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI  164 (165)
Q Consensus        94 --~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~l~  164 (165)
                        .||+|.+++|                      +.+.+++..++.++++++... ...+.++++++|+++|.
T Consensus       272 ~~~~p~V~~a~v----------------------v~~~~d~~~ge~~~a~v~~~~-~~~~~~~l~~~l~~~L~  321 (358)
T 4gs5_A          272 VFHHLNIGNAFF----------------------CWWEPDAKLGQKLVLVIENAM-PEALTERLTAEIRSRVS  321 (358)
T ss_dssp             HHHHHTCCCCEE----------------------EEEEEETTTEEEEEEEEESCC-CHHHHHHHHHHHHHHSC
T ss_pred             hccCCCccEEEE----------------------EEecCCccCCEEEEEEEECCC-CCcCHHHHHHHHHhhCC
Confidence              5799999872                      457788888999999887543 34556889999998874

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.71  E-value=9.7e-18  Score=142.16  Aligned_cols=68  Identities=40%  Similarity=0.680  Sum_probs=62.9

Q ss_pred             CCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhc-----------CCCeEeeccEEEEecCCcEEEe
Q psy7295           2 SLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG-----------EDNWLRTGDQFVLTKDGFGSVV   69 (165)
Q Consensus         2 pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~-----------~~~~~~TGD~~~~~~dG~l~~~   69 (165)
                      | ++++|+|++ |++++.|+.|||+|+||+++.|||++|+.|++.|.           ++|||+|||+|+++ ||+|+|+
T Consensus       401 ~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~  478 (480)
T 3t5a_A          401 S-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFII  478 (480)
T ss_dssp             S-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEEC
T ss_pred             C-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEe
Confidence            5 789999987 89999999999999999999999999999999995           56799999999997 9999999


Q ss_pred             cC
Q psy7295          70 GR   71 (165)
Q Consensus        70 GR   71 (165)
                      ||
T Consensus       479 GR  480 (480)
T 3t5a_A          479 GR  480 (480)
T ss_dssp             C-
T ss_pred             CC
Confidence            98

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.24  E-value=1.6e-11  Score=85.44  Aligned_cols=70  Identities=20%  Similarity=0.335  Sum_probs=57.9

Q ss_pred             cCCCceEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCC
Q psy7295          70 GRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSS  149 (165)
Q Consensus        70 GR~dd~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~  149 (165)
                      .|.||+|+++|.||+|.+||++|.+||+|.+++                       +++++++..++.+.+++++.++..
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~-----------------------vv~v~~~~~~~~~~~~V~~~~~~~   57 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDY-----------------------LITLETAESNDEMTVEVELSQLFT   57 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEE-----------------------EEEEEEETTEEEEEEEEEECTTCC
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccce-----------------------EEEEeccccceeEEEEEEEeeccc
Confidence            489999999999999999999999999999998                       888899889999999999877655


Q ss_pred             CCH---HHHHHHHHhh
Q psy7295         150 LTE---DELRGYFKGK  162 (165)
Q Consensus       150 ~~~---~~l~~~l~~~  162 (165)
                      .+.   +++.+.++++
T Consensus        58 ~~~~~~~~l~~~i~~~   73 (109)
T 3lax_A           58 DDYGRLQALTREITRQ   73 (109)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhHHHHHHH
Confidence            443   3344444443

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=98.01  E-value=2.5e-06  Score=69.87  Aligned_cols=64  Identities=17%  Similarity=0.179  Sum_probs=40.0

Q ss_pred             CCCcEEEEECC-CCCccCCCCceEEEEEeCc---ccccccCChhhhhhhhcCCCeEeeccEEEEecC--C-------cEE
Q psy7295           1 MSLNIVKVVDS-DNRMVPYGQQGELLIRGYC---NMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD--G-------FGS   67 (165)
Q Consensus         1 ~pg~~v~vvd~-~g~~~~~g~~GeL~v~g~~---~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~d--G-------~l~   67 (165)
                      +|+++++|+|+ +|+++|.|+.|||+|++..   ++.                 .|+|||++...+.  |       .+.
T Consensus       292 ~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~l~-----------------ry~tgD~~~~~~~~~g~~~d~~~~v~  354 (369)
T 3hgu_A          292 SPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYP-----------------RVAERDTAIRLPGVSGFAGDRLADIE  354 (369)
T ss_dssp             TTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTEEEE-----------------EEEEEEEEEEECCSTTCSSCEEEEEE
T ss_pred             CCCeEEEEECCCCCcCCCCCCceEEEEEEcCcccccc-----------------cccCCceEEEecCCCCCcCcccccce
Confidence            47899999998 7999999999999998732   122                 3578888877543  3       245


Q ss_pred             EecCCCceEEECcE
Q psy7295          68 VVGRIKDLIIRGGE   81 (165)
Q Consensus        68 ~~GR~dd~i~~~G~   81 (165)
                      .++|.++..++.|.
T Consensus       355 ~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          355 PLKISEGRKVIEGV  368 (369)
T ss_dssp             ECC-----------
T ss_pred             eccccCCCceeeec
Confidence            67888888888775

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=97.63  E-value=4.3e-05  Score=67.37  Aligned_cols=64  Identities=16%  Similarity=0.206  Sum_probs=54.1

Q ss_pred             ccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEec----CCcEEEecCCCceEEECcEEEChHHHHH
Q psy7295          15 MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK----DGFGSVVGRIKDLIIRGGENIYPSEIED   90 (165)
Q Consensus        15 ~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~----dG~l~~~GR~dd~i~~~G~~v~~~eIE~   90 (165)
                      .|..|+.+||+|+...-.-+                 |++||+.+++.    ...+.|+||.++++++.|+++++.+||+
T Consensus       380 eVe~G~~YelViTt~~GL~R-----------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~  442 (581)
T 4eql_A          380 DVKLGCTYEPVVTNFAGLYR-----------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFK  442 (581)
T ss_dssp             GCCTTCEEEEEEECSSSCCS-----------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHH
T ss_pred             HcCCCceEEEEEeeccceee-----------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHH
Confidence            35689999999988653333                 49999999975    4579999999999999999999999999


Q ss_pred             HHhcC
Q psy7295          91 FLTTH   95 (165)
Q Consensus        91 ~l~~~   95 (165)
                      ++.+.
T Consensus       443 al~~a  447 (581)
T 4eql_A          443 AVSQA  447 (581)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            99754

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=97.61  E-value=4.8e-05  Score=67.38  Aligned_cols=63  Identities=22%  Similarity=0.275  Sum_probs=53.7

Q ss_pred             ccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEec----CCcEEEecCCCceEEECcEEEChHHHHH
Q psy7295          15 MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTK----DGFGSVVGRIKDLIIRGGENIYPSEIED   90 (165)
Q Consensus        15 ~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~----dG~l~~~GR~dd~i~~~G~~v~~~eIE~   90 (165)
                      .|..|+.+||+|+...   |+|.              |++||+.+++.    ...+.|+||.++++++.|.++++.+||+
T Consensus       392 eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~  454 (609)
T 4b2g_A          392 HVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQK  454 (609)
T ss_dssp             GCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred             HcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHH
Confidence            4778999999997754   4443              69999999973    4679999999999999999999999999


Q ss_pred             HHhc
Q psy7295          91 FLTT   94 (165)
Q Consensus        91 ~l~~   94 (165)
                      ++..
T Consensus       455 av~~  458 (609)
T 4b2g_A          455 AVDN  458 (609)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9864

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=97.40  E-value=0.00012  Score=64.53  Aligned_cols=63  Identities=16%  Similarity=0.175  Sum_probs=53.2

Q ss_pred             ccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecC----CcEEEecCCCceEEECcEEEChHHHHH
Q psy7295          15 MVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD----GFGSVVGRIKDLIIRGGENIYPSEIED   90 (165)
Q Consensus        15 ~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~d----G~l~~~GR~dd~i~~~G~~v~~~eIE~   90 (165)
                      .|..|+.+||+|+...-.-+                 |++||+.+++.-    ..+.|+||.++++++.|.++++.+||+
T Consensus       387 eve~G~~YelviTt~~GL~R-----------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~  449 (581)
T 4epl_A          387 QVKIGEEYEVVITNYAGLYR-----------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQL  449 (581)
T ss_dssp             GCCTTCEEEEEEESTTSCSS-----------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred             HcCCCCeEEEEEeeccceee-----------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHH
Confidence            57789999999988653333                 499999998642    469999999999999999999999999


Q ss_pred             HHhc
Q psy7295          91 FLTT   94 (165)
Q Consensus        91 ~l~~   94 (165)
                      ++..
T Consensus       450 al~~  453 (581)
T 4epl_A          450 SVES  453 (581)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	9e-38
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-34
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	6e-34
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-29
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-29
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	8e-29
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	6e-28

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  133 bits (334), Expect = 9e-38
 Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 24/158 (15%)

Query: 6   VKVVDSDN-RMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDG 64
            KVVD D  + +   Q+GEL +RG   M  Y  N E T  ++ +D WL +GD     +D 
Sbjct: 368 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 427

Query: 65  FGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGY 124
              +V R+K LI   G  + P+E+E  L  HP+I +A                       
Sbjct: 428 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA----------------------- 464

Query: 125 CVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
            V G+ D+  GE   A + L    ++TE E+  Y   +
Sbjct: 465 GVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ 502

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  123 bits (310), Expect = 3e-34
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 25/159 (15%)

Query: 6   VKVVDSDNRMVP--YGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
           ++V D + R VP      GE+ ++G      Y+GNEE T+  L  D + RTGD  V  ++
Sbjct: 359 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 418

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           G+  +  R+KDLI  GGE I   ++E+ L  HP + EA                      
Sbjct: 419 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEA---------------------- 456

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
             V  I   +  E   A +         E+      K  
Sbjct: 457 -AVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAG 494

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  123 bits (309), Expect = 6e-34
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 30/164 (18%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCN--MLRYWGNEEKTKE--ILGEDNWLRTGDQFVLT 61
             +VD++        +G L+I           +G+ E+ ++       N   +GD     
Sbjct: 442 PALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD 501

Query: 62  KDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSI 121
           +DG+  + GR+ D++   G  +  +EIE  L  HP I EA                    
Sbjct: 502 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEA-------------------- 541

Query: 122 PGYCVYGIRDERMGEEIGASIRLTENSSLTED---ELRGYFKGK 162
               V GI     G+ I A + L      + +   E+R + + +
Sbjct: 542 ---AVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKE 582

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  110 bits (276), Expect = 1e-29
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 31/165 (18%)

Query: 4   NIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKE------ILGEDNWLRTGDQ 57
             + +VD + ++   G+ GEL I G      YW   E T +       +  +   +TGDQ
Sbjct: 339 TQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 398

Query: 58  FVLTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQ 117
                DG    +GRI + +   G  +   E+E  L  H  I E                 
Sbjct: 399 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISET---------------- 442

Query: 118 QCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGK 162
                   V   +D +    + A         +  ++LR +   +
Sbjct: 443 -------AVSVHKDHQEQPYLCAYFVS--EKHIPLEQLRQFSSEE 478

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  109 bits (273), Expect = 3e-29
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 25/161 (15%)

Query: 5   IVKVVDSDNRMVPYGQQGELLIRGYC-NMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKD 63
           IV++    + +V  G++GEL++       + Y    + T E L +D W RT D  V T +
Sbjct: 334 IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE 392

Query: 64  GFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPG 123
           G   ++GR+ D+II GGENI+PSEIE  L T P + E                       
Sbjct: 393 GTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEV---------------------- 430

Query: 124 YCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
             V G+ D+R G+ + A +      +L+ D L  + +   +
Sbjct: 431 -VVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL 470

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  108 bits (270), Expect = 8e-29
 Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 24/159 (15%)

Query: 6   VKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGF 65
            +V D  +R V  G+ G LL RG   +  Y+  EE       ED + RTGD   LT+DG+
Sbjct: 363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGY 422

Query: 66  GSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYC 125
             V GR KD I RGGE +   E+E+ L  HP + +A                        
Sbjct: 423 IVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDA-----------------------A 459

Query: 126 VYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKGKAI 164
           +  + D+ +GE     I   +  +    EL+ + + + +
Sbjct: 460 MVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRERGL 497

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (265), Expect = 6e-28
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 29/153 (18%)

Query: 6   VKVVDSDNRM--VPYGQQGELLIRGYCN--MLRYWGNEEKTKE--ILGEDNWLRTGDQFV 59
             V+D +          +G L ++          W N ++  +  +     +  TGD   
Sbjct: 430 AVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAA 489

Query: 60  LTKDGFGSVVGRIKDLIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQC 119
             KDG+  ++GR+ D++   G  +  +EIE  +   P + E                   
Sbjct: 490 KDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAEC------------------ 531

Query: 120 SIPGYCVYGIRDERMGEEIGASIRLTENSSLTE 152
                 V G  D+  G+ + A + L   SS + 
Sbjct: 532 -----AVVGFNDDLTGQAVAAFVVLKNKSSWST 559

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.97
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.96
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.96
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.96
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.95
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.94
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.91

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.97  E-value=1.8e-31  Score=225.66  Aligned_cols=141  Identities=33%  Similarity=0.517  Sum_probs=129.0

Q ss_pred             CCCcEEEEECCC-CCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEEC
Q psy7295           1 MSLNIVKVVDSD-NRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRG   79 (165)
Q Consensus         1 ~pg~~v~vvd~~-g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~   79 (165)
                      +||++++|+|++ |++++.|+.|||+|+|++++.|||++++.+...+..++||+|||+++++++|++++.||.||+||++
T Consensus       363 ~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~  442 (541)
T d1lcia_         363 VPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYK  442 (541)
T ss_dssp             CTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEET
T ss_pred             cCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEEC
Confidence            589999999975 9999999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             cEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy7295          80 GENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYF  159 (165)
Q Consensus        80 G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  159 (165)
                      |++|+|.+||+.|.+||+|.+|+                       |++.+++..++.++++|+++++...+.++++++|
T Consensus       443 G~~v~~~~IE~~l~~~p~V~~~~-----------------------v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~  499 (541)
T d1lcia_         443 GYQVAPAELESILLQHPNIFDAG-----------------------VAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYV  499 (541)
T ss_dssp             TEEECHHHHHHHHHTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred             CEEECHHHHHHHHHhCCCccEEE-----------------------EEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHH
Confidence            99999999999999999999998                       8999999899999999999888888999999999


Q ss_pred             Hhhhc
Q psy7295         160 KGKAI  164 (165)
Q Consensus       160 ~~~l~  164 (165)
                      +++|.
T Consensus       500 ~~~l~  504 (541)
T d1lcia_         500 ASQVT  504 (541)
T ss_dssp             HHHSC
T ss_pred             HHhCC
Confidence            98764

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.7e-30  Score=220.51  Aligned_cols=140  Identities=31%  Similarity=0.441  Sum_probs=105.5

Q ss_pred             CCCcEEEEECCCCCccCC--CCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEE
Q psy7295           1 MSLNIVKVVDSDNRMVPY--GQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIR   78 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~--g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~   78 (165)
                      +||++++|+|++|++++.  ++.|||+|+||+++.|||++++.|.+.|..+|||+|||+|++++||++++.||.||+||+
T Consensus       354 ~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~  433 (534)
T d1v25a_         354 IPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKS  433 (534)
T ss_dssp             CTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEE
T ss_pred             cCCcEEEEECCCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEE
Confidence            589999999999998876  678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy7295          79 GGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGY  158 (165)
Q Consensus        79 ~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  158 (165)
                      +|++|+|.+||+.|.+||+|.+++                       |++.+++..++.++++|+++.+.....+.++.+
T Consensus       434 ~G~~v~~~eIE~~l~~~~~V~~a~-----------------------v~~~~~~~~~~~l~a~vv~~~~~~~~~~~~~~~  490 (534)
T d1v25a_         434 GGEWISSVDLENALMGHPKVKEAA-----------------------VVAIPHPKWQERPLAVVVPRGEKPTPEELNEHL  490 (534)
T ss_dssp             TTEEEEHHHHHCC----------C-----------------------EEEEECSSSSEEEEECC----------------
T ss_pred             CCEEECHHHHHHHHHhCCCcceEE-----------------------EEEEECCCCCeEEEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999999998                       999999999999999998865443333333334


Q ss_pred             HHhhh
Q psy7295         159 FKGKA  163 (165)
Q Consensus       159 l~~~l  163 (165)
                      ++++|
T Consensus       491 ~~~~l  495 (534)
T d1v25a_         491 LKAGF  495 (534)
T ss_dssp             ---CC
T ss_pred             HHhcC
Confidence            55544

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.96  E-value=8.2e-30  Score=224.03  Aligned_cols=141  Identities=24%  Similarity=0.317  Sum_probs=129.5

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEe--CcccccccCChhhhhhhhc--CCCeEeeccEEEEecCCcEEEecCCCceE
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRG--YCNMLRYWGNEEKTKEILG--EDNWLRTGDQFVLTKDGFGSVVGRIKDLI   76 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g--~~~~~gY~~~~~~t~~~~~--~~~~~~TGD~~~~~~dG~l~~~GR~dd~i   76 (165)
                      +||++++|+|++|++++.|+.|||+|+|  |+++.+||++++.+.+.+.  .+|||+|||++++|+||+|+|+||+||+|
T Consensus       437 ~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i  516 (643)
T d1pg4a_         437 FFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL  516 (643)
T ss_dssp             CTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEE
T ss_pred             cCCCEEEEECCCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEE
Confidence            5899999999999999999999999999  5788999999998887763  47999999999999999999999999999


Q ss_pred             EECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCH---H
Q psy7295          77 IRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTE---D  153 (165)
Q Consensus        77 ~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---~  153 (165)
                      |++|++|+|.|||++|.+||+|.+|+                       |++.+++..++.+++||+++++...+.   .
T Consensus       517 k~~G~ri~p~eIE~~l~~~p~V~eaa-----------------------Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~  573 (643)
T d1pg4a_         517 NVSGHRLGTAEIESALVAHPKIAEAA-----------------------VVGIPHAIKGQAIYAYVTLNHGEEPSPELYA  573 (643)
T ss_dssp             EETTEEEEHHHHHHHHHHSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHHH
T ss_pred             EECCEEECHHHHHHHHHhCCCcceEE-----------------------EEEEECCCCCeEEEEEEEECCCCCCCHHHHH
Confidence            99999999999999999999999998                       999999999999999999988776665   4


Q ss_pred             HHHHHHHhhhc
Q psy7295         154 ELRGYFKGKAI  164 (165)
Q Consensus       154 ~l~~~l~~~l~  164 (165)
                      +|+++|+++|.
T Consensus       574 ~i~~~~~~~L~  584 (643)
T d1pg4a_         574 EVRNWVRKEIG  584 (643)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHhhCC
Confidence            78889988764

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.96  E-value=7.5e-29  Score=208.89  Aligned_cols=139  Identities=24%  Similarity=0.297  Sum_probs=128.8

Q ss_pred             CCCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhc------CCCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILG------EDNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~------~~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      +|+..+.+.|+++++++.|+.|||+|+||.++.|||+++..+.+.|.      .++||+|||+|++|+||+|++.||++|
T Consensus       336 ~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d  415 (514)
T d1amua_         336 IQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDN  415 (514)
T ss_dssp             CTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGG
T ss_pred             eeeeeEeeecccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccC
Confidence            46789999999999999999999999999999999999999988873      468999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHH
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDE  154 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  154 (165)
                      +||++|++|+|.+||+.|.+||+|.+++                       |++.+++..++.++++++++++  .+.++
T Consensus       416 ~i~~~G~~i~p~~IE~~l~~~~~V~~~~-----------------------V~~~~~~~~g~~~~a~v~~~~~--~~~~~  470 (514)
T d1amua_         416 QVKIRGHRVELEEVESILLKHMYISETA-----------------------VSVHKDHQEQPYLCAYFVSEKH--IPLEQ  470 (514)
T ss_dssp             EEEETTEEEEHHHHHHHHTTSTTEEEEE-----------------------EEEEECTTSCEEEEEEEEESSC--CCHHH
T ss_pred             EEEECCEEECHHHHHHHHHhCCCccEEE-----------------------EEEEECCCCCEEEEEEEEcCCC--CCHHH
Confidence            9999999999999999999999999998                       9999999999999999998664  57899


Q ss_pred             HHHHHHhhhc
Q psy7295         155 LRGYFKGKAI  164 (165)
Q Consensus       155 l~~~l~~~l~  164 (165)
                      ++++++++|.
T Consensus       471 l~~~~~~~l~  480 (514)
T d1amua_         471 LRQFSSEELP  480 (514)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHhhCC
Confidence            9999988764

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.5e-28  Score=211.91  Aligned_cols=141  Identities=21%  Similarity=0.288  Sum_probs=120.3

Q ss_pred             CCCcEEEEECCCCC--ccCCCCceEEEEEe--CcccccccCChhhhhhhhc--CCCeEeeccEEEEecCCcEEEecCCCc
Q psy7295           1 MSLNIVKVVDSDNR--MVPYGQQGELLIRG--YCNMLRYWGNEEKTKEILG--EDNWLRTGDQFVLTKDGFGSVVGRIKD   74 (165)
Q Consensus         1 ~pg~~v~vvd~~g~--~~~~g~~GeL~v~g--~~~~~gY~~~~~~t~~~~~--~~~~~~TGD~~~~~~dG~l~~~GR~dd   74 (165)
                      +||++++|+|+++.  ..+.+..|||++++  |+++.|||++++.+.+.|.  .+|||+|||+|++|+||+|+|+||+||
T Consensus       425 ~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd  504 (640)
T d1ry2a_         425 FFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDD  504 (640)
T ss_dssp             CTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTS
T ss_pred             cCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCC
Confidence            58999999998743  34556779999988  6899999999999998884  459999999999999999999999999


Q ss_pred             eEEECcEEEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCC---
Q psy7295          75 LIIRGGENIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLT---  151 (165)
Q Consensus        75 ~i~~~G~~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---  151 (165)
                      +||++|++|+|.|||++|.+||.|.+|+                       |++.+++..++.+++||+++++...+   
T Consensus       505 ~Ik~~G~~I~p~eIE~~l~~~p~V~~a~-----------------------Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~  561 (640)
T d1ry2a_         505 VVNVSGHRLSTAEIEAAIIEDPIVAECA-----------------------VVGFNDDLTGQAVAAFVVLKNKSSWSTAT  561 (640)
T ss_dssp             CBCSSSCCBCHHHHHHHHHSSTTEEEEE-----------------------EECCCCCTTSCCCEEEEEEC---------
T ss_pred             EEEECCEEECHHHHHHHHHhCCCccEEE-----------------------EEEEECCCCCeEEEEEEEEcCCCCccccc
Confidence            9999999999999999999999999998                       99999999999999999987754332   


Q ss_pred             -------HHHHHHHHHhhhc
Q psy7295         152 -------EDELRGYFKGKAI  164 (165)
Q Consensus       152 -------~~~l~~~l~~~l~  164 (165)
                             .+++.++|+++|.
T Consensus       562 ~~~~~~l~~~l~~~~~~~L~  581 (640)
T d1ry2a_         562 DDELQDIKKHLVFTVRKDIG  581 (640)
T ss_dssp             ---CCSHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHhhCC
Confidence                   2567777777664

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=6.8e-27  Score=196.86  Aligned_cols=137  Identities=33%  Similarity=0.534  Sum_probs=127.0

Q ss_pred             CCcEEEEECCCCCccCCCCceEEEEEeCcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcE
Q psy7295           2 SLNIVKVVDSDNRMVPYGQQGELLIRGYCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGE   81 (165)
Q Consensus         2 pg~~v~vvd~~g~~~~~g~~GeL~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~   81 (165)
                      |+..+.+.+++|++++.++.|||+++|+.++.||++++..+...+.+++||+|||++++++||+|+++||.||+||++|+
T Consensus       359 ~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~  438 (536)
T d1mdba_         359 PYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE  438 (536)
T ss_dssp             TTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSC
T ss_pred             CcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCE
Confidence            45677788888999999999999999999999999999999999989999999999999999999999999999999999


Q ss_pred             EEChHHHHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q psy7295          82 NIYPSEIEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG  161 (165)
Q Consensus        82 ~v~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  161 (165)
                      +|+|.+||+.|.+||+|.+|+                       |++.+++..++.++++|+++++ ..+.+++++++++
T Consensus       439 ~i~p~~IE~~l~~~p~V~~a~-----------------------vvg~~~~~~g~~~~a~v~~~~~-~~~~~~l~~~l~~  494 (536)
T d1mdba_         439 KVAAEEVENHLLAHPAVHDAA-----------------------MVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRE  494 (536)
T ss_dssp             EECHHHHHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEESSS-CCCHHHHHHHHHH
T ss_pred             EECHHHHHHHHHhCCCccEEE-----------------------EEEEEcCCCCeEEEEEEEECCC-CCCHHHHHHHHHh
Confidence            999999999999999999998                       8999998889999999998754 4678889999987


Q ss_pred             h
Q psy7295         162 K  162 (165)
Q Consensus       162 ~  162 (165)
                      +
T Consensus       495 ~  495 (536)
T d1mdba_         495 R  495 (536)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.91  E-value=1.5e-24  Score=179.65  Aligned_cols=129  Identities=35%  Similarity=0.603  Sum_probs=117.2

Q ss_pred             ECCCCCccCCCCceEEEEEe-CcccccccCChhhhhhhhcCCCeEeeccEEEEecCCcEEEecCCCceEEECcEEEChHH
Q psy7295           9 VDSDNRMVPYGQQGELLIRG-YCNMLRYWGNEEKTKEILGEDNWLRTGDQFVLTKDGFGSVVGRIKDLIIRGGENIYPSE   87 (165)
Q Consensus         9 vd~~g~~~~~g~~GeL~v~g-~~~~~gY~~~~~~t~~~~~~~~~~~TGD~~~~~~dG~l~~~GR~dd~i~~~G~~v~~~e   87 (165)
                      .+..++.++.|+.|++.+.+ +....+|++++..|.+.| .+|||+|||+|++++||.|+++||.||+||++|++|+|.+
T Consensus       338 ~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~  416 (503)
T d3cw9a1         338 GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE  416 (503)
T ss_dssp             TSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHH
T ss_pred             ecccCcccCCCccccccccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHH
Confidence            34558899999999988765 666778999999998888 6799999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCChHHhHhhhhhhhccccccccccCCCceeEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q psy7295          88 IEDFLTTHPDILEAYVSEYRLKLDFTGLLQQCSIPGYCVYGIRDERMGEEIGASIRLTENSSLTEDELRGYFKG  161 (165)
Q Consensus        88 IE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  161 (165)
                      ||+.|.+||+|.+|+                       |++.+++..++.++++|+++++...+.+++++++++
T Consensus       417 IE~~l~~~p~V~~~~-----------------------v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~  467 (503)
T d3cw9a1         417 IERVLGTAPGVTEVV-----------------------VIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS  467 (503)
T ss_dssp             HHHHHTTSTTEEEEE-----------------------EEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCccEEE-----------------------EEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence            999999999999998                       999999888999999999988888899999999963