Psyllid ID: psy7353

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNKDI
Secondary Structure (PSIPRED)
ccccccHHHHHccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccEccccccEcccccccccccccEEEEEEccccccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
msvrglnlfRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLyhegcqrkvfpcpvcgkefsrpdkmknhmktgcqrkvfpcpvcgkefsrpdkmknhmktvhdcfmpattpqgqrgqraspvidfhkdsvfnkdi
Flexible Loop (DISEMBL)
msvrglnlfryASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEfsrpdkmknhmktgcqrkvfpcpvcGKEFSRPDKMKNHMKTVHDCFMPATtpqgqrgqraspvidfhkdsvfnkdi
Low Complexity Region (SEG)
MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNKDI
Disordered region (IsUnstruct)
****GLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFS*********KTGCQRKVFPCPVCGKE************************************************
Disordered Region (DISOPRED)
***RGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDF**********
Disordered Region (DISEMBL)
MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATT*********SPVIDFHKDSVFNKDI
Disordered Region (DISPRO)
*SVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASP**D***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNKDI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
P42282	813	Protein tramtrack, alpha	yes	N/A	0.539	0.092	0.826	6e-34
Q14119	521	Vascular endothelial zinc	no	N/A	0.561	0.149	0.385	3e-10
Q9HBE1	687	POZ-, AT hook-, and zinc	no	N/A	0.561	0.113	0.421	7e-10
A2BID7	1121	PR domain zinc finger pro	no	N/A	0.532	0.066	0.402	9e-10
Q9NQV6	1147	PR domain zinc finger pro	no	N/A	0.618	0.074	0.340	2e-09
Q5RAX9	1117	PR domain zinc finger pro	no	N/A	0.618	0.076	0.340	2e-09
B4F6U4	1173	PR domain zinc finger pro	no	N/A	0.697	0.082	0.343	2e-09
Q3UTQ7	1184	PR domain zinc finger pro	no	N/A	0.618	0.072	0.351	2e-09
P56270	477	Myc-associated zinc finge	no	N/A	0.561	0.163	0.361	1e-08
P56671	477	Myc-associated zinc finge	no	N/A	0.561	0.163	0.361	1e-08

>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3

 Score =  142 bits (358), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 62/75 (82%), Positives = 68/75 (90%)

Query: 1   MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
           MSVRGL+LFRYASV EG+Y+C ECAK ++ KTFKNKYSFQRHAFLYHEG  RKVFPCPVC
Sbjct: 592 MSVRGLDLFRYASVVEGVYRCTECAKENMQKTFKNKYSFQRHAFLYHEGKHRKVFPCPVC 651

Query: 61  GKEFSRPDKMKNHMK 75
            KEFSRPDKMKNH+K
Sbjct: 652 SKEFSRPDKMKNHLK 666

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform alpha is required to repress genes that promote the R7 cell fate. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. May bind to the region 5'-AGGG[CT]GG-3'. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk.
Drosophila melanogaster (taxid: 7227)

>sp|Q14119|VEZF1_HUMAN Vascular endothelial zinc finger 1 OS=Homo sapiens GN=VEZF1 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT--GCQRKVFPCPVC 88
           K F++ Y   RH   + +    K F CP+C + F R D+M  H+++  G   K + C VC
Sbjct: 181 KAFRDVYHLNRHKLSHSD---EKPFECPICNQRFKRKDRMTYHVRSHEGGITKPYTCSVC 237

Query: 89  GKEFSRPDKMKNHMKTVHDCFMP 111
           GK FSRPD +  H+K VH    P
Sbjct: 238 GKGFSRPDHLSCHVKHVHSTERP 260

Possible transcription factor. Specifically binds to the CT/GC-rich region of the interleukin-3 promoter and mediates tax transactivation of IL-3.

Homo sapiens (taxid: 9606)

>sp|Q9HBE1|PATZ1_HUMAN POZ-, AT hook-, and zinc finger-containing protein 1 OS=Homo sapiens GN=PATZ1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT--GCQRKVFPCPVC 88
           K F++ Y   RH  L H G   K + CPVCG  F R D+M  H+++  G   K + C  C
Sbjct: 362 KIFRDVYHLNRHK-LSHSG--EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSC 418

Query: 89  GKEFSRPDKMKNHMKTVHDCFMP 111
           GK FSRPD +  H+K VH    P
Sbjct: 419 GKGFSRPDHLNGHIKQVHTSERP 441

Transcriptional repressor.

Homo sapiens (taxid: 9606)

>sp|A2BID7|PRD10_DANRE PR domain zinc finger protein 10 OS=Danio rerio GN=prdm10 PE=3 SV=2

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGK 90
           K+F +    ++H   +H     KVF C  C K F RPDK++ HM     RK F C  CGK
Sbjct: 592 KSFTDFIQVKKHVRSFHS---EKVFQCSECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGK 648

Query: 91  EFSRPDKMKNHMKTVHD 107
           +F R DK++ HM+ +H+
Sbjct: 649 QFKRKDKLREHMQRMHN 665

May be involved in transcriptional regulation.

Danio rerio (taxid: 7955)

>sp|Q9NQV6|PRD10_HUMAN PR domain zinc finger protein 10 OS=Homo sapiens GN=PRDM10 PE=1 SV=3

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 14  VTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNH 73
           + +G + C  C K      F +    ++H   +H     K++ C  C K F RPDK++ H
Sbjct: 611 INDGYFTCPTCKK-----RFPDFIQVKKHVRSFHS---EKIYQCTECDKAFCRPDKLRLH 662

Query: 74  MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHD 107
           M     RK F C  CGK+F R DK++ HM+ +H+
Sbjct: 663 MLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMHN 696

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5RAX9|PRD10_PONAB PR domain zinc finger protein 10 OS=Pongo abelii GN=PRDM10 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 14  VTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNH 73
           + +G + C  C K      F +    ++H   +H     K++ C  C K F RPDK++ H
Sbjct: 581 INDGYFTCPTCKK-----RFPDFIQVKKHVRSFHS---EKIYQCTECDKAFCRPDKLRLH 632

Query: 74  MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHD 107
           M     RK F C  CGK+F R DK++ HM+ +H+
Sbjct: 633 MLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMHN 666

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|B4F6U4|PRD10_XENTR PR domain zinc finger protein 10 OS=Xenopus tropicalis GN=prdm10 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 6   LNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFS 65
           L+L +   V   I  C  C      K F +    ++H   +H     K++ C  C K F 
Sbjct: 629 LDLLKDHVVVHIIDGCFSCPTCK--KRFTDFIQVKKHVRSFHS---EKIYQCTECDKAFC 683

Query: 66  RPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHD 107
           RPDK++ HM     RK F C  CGK+F R DK++ HM+ +H+
Sbjct: 684 RPDKLRLHMLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMHN 725

May be involved in transcriptional regulation.

Xenopus tropicalis (taxid: 8364)

>sp|Q3UTQ7|PRD10_MOUSE PR domain zinc finger protein 10 OS=Mus musculus GN=Prdm10 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 14  VTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNH 73
           V +G + C  C K      F +    ++H   +H     K++ C  C K F RPDK++ H
Sbjct: 601 VNDGCFTCPTCKK-----RFPDFIQVKKHVRSFHS---EKIYQCTECDKAFCRPDKLRLH 652

Query: 74  MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHD 107
           M     RK F C  CGK+F R DK++ HM+ +H+
Sbjct: 653 MLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMHN 686

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|P56270|MAZ_HUMAN Myc-associated zinc finger protein OS=Homo sapiens GN=MAZ PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT--GCQRKVFPCPVC 88
           K F++ Y   RH   + +    K + CPVC + F R D+M  H+++  G   K + C  C
Sbjct: 286 KAFRDVYHLNRHKLSHSD---EKPYQCPVCQQRFKRKDRMSYHVRSHDGAVHKPYNCSHC 342

Query: 89  GKEFSRPDKMKNHMKTVHDCFMP 111
           GK FSRPD + +H++ VH    P
Sbjct: 343 GKSFSRPDHLNSHVRQVHSTERP 365

May function as a transcription factor with dual roles in transcription initiation and termination. Binds to two sites, ME1a1 and ME1a2, within the MYC promoter having greater affinity for the former. Also binds to multiple G/C-rich sites within the promoter of the Sp1 family of transcription factors.

Homo sapiens (taxid: 9606)

>sp|P56671|MAZ_MOUSE Myc-associated zinc finger protein OS=Mus musculus GN=Maz PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT--GCQRKVFPCPVC 88
           K F++ Y   RH   + +    K + CPVC + F R D+M  H+++  G   K + C  C
Sbjct: 286 KAFRDVYHLNRHKLSHSD---EKPYQCPVCQQRFKRKDRMSYHVRSHDGAVHKPYNCSHC 342

Query: 89  GKEFSRPDKMKNHMKTVHDCFMP 111
           GK FSRPD + +H++ VH    P
Sbjct: 343 GKSFSRPDHLNSHVRQVHSTERP 365

Transcriptional activator that binds to purine-rich GAGA sites found in the promoter of many genes including insulin I and II and islet amyloid polypeptide.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
328710720	565	PREDICTED: protein tramtrack, alpha isof	0.546	0.134	0.894	6e-36
345486024	550	PREDICTED: hypothetical protein LOC10012	0.597	0.150	0.675	7e-36
340729096	603	PREDICTED: hypothetical protein LOC10064	0.597	0.137	0.666	2e-35
332021452	273	Protein tramtrack, alpha isoform [Acromy	0.597	0.304	0.657	3e-35
255918127	436	tramtrack [Tribolium castaneum]	0.597	0.190	0.675	3e-35
350401483	582	PREDICTED: protein tramtrack, alpha isof	0.597	0.142	0.657	5e-35
270007286	175	hypothetical protein TcasGA2_TC013843 [T	0.597	0.474	0.675	2e-34
322790849	205	hypothetical protein SINV_00622 [Solenop	0.597	0.404	0.657	4e-34
157103639	378	hypothetical protein AaeL_AAEL003947 [Ae	0.546	0.201	0.855	4e-34
170047687	454	conserved hypothetical protein [Culex qu	0.546	0.167	0.855	6e-34

>gi|328710720|ref|XP_001951822.2| PREDICTED: protein tramtrack, alpha isoform-like isoform 1 [Acyrthosiphon pisum] gi|328710722|ref|XP_003244341.1| PREDICTED: protein tramtrack, alpha isoform-like isoform 2 [Acyrthosiphon pisum]

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 68/76 (89%), Positives = 73/76 (96%)

Query: 1   MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
           MSVRGLNLFRYA+V+EGIYKC+ECAK D++KTFKNKYSFQRHAFLYHEG QRKVFPCPVC
Sbjct: 469 MSVRGLNLFRYATVSEGIYKCLECAKTDILKTFKNKYSFQRHAFLYHEGHQRKVFPCPVC 528

Query: 61  GKEFSRPDKMKNHMKT 76
            KEFSRPDKMKNHMKT
Sbjct: 529 AKEFSRPDKMKNHMKT 544

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486024|ref|XP_003425388.1| PREDICTED: hypothetical protein LOC100122117 [Nasonia vitripennis] gi|345486026|ref|XP_003425389.1| PREDICTED: hypothetical protein LOC100122117 [Nasonia vitripennis]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 80/111 (72%), Gaps = 28/111 (25%)

Query: 1   MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
           MSVRGLNLFRYAS++EG+Y+C ECAKVD+ KTFKNKYSFQRHAFLYHEG QRKVFPCPVC
Sbjct: 455 MSVRGLNLFRYASISEGVYQCTECAKVDIQKTFKNKYSFQRHAFLYHEGHQRKVFPCPVC 514

Query: 61  GKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP 111
           GKEFSRPDKMKN                            HMKTVHDCFMP
Sbjct: 515 GKEFSRPDKMKN----------------------------HMKTVHDCFMP 537

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729096|ref|XP_003402844.1| PREDICTED: hypothetical protein LOC100647247 [Bombus terrestris]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 80/111 (72%), Gaps = 28/111 (25%)

Query: 1   MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
           MSVRGLNLFRYAS++EG+Y+C ECAK+D+ KTFKNKYSFQRHAFLYHEG QRKVFPCPVC
Sbjct: 281 MSVRGLNLFRYASISEGVYQCTECAKLDIQKTFKNKYSFQRHAFLYHEGHQRKVFPCPVC 340

Query: 61  GKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP 111
           GKEFSRPDKMKN                            HMKTVHDCFMP
Sbjct: 341 GKEFSRPDKMKN----------------------------HMKTVHDCFMP 363

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021452|gb|EGI61820.1| Protein tramtrack, alpha isoform [Acromyrmex echinatior]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 79/111 (71%), Gaps = 28/111 (25%)

Query: 1   MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
           MSVRGLNLFRYAS++EG+Y+C ECAK+D+ KTFKNKYSFQRHAFLYHEG QRKVFPCPVC
Sbjct: 176 MSVRGLNLFRYASISEGVYQCTECAKLDIQKTFKNKYSFQRHAFLYHEGHQRKVFPCPVC 235

Query: 61  GKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP 111
            KEFSRPDKMKN                            HMKTVHDCFMP
Sbjct: 236 AKEFSRPDKMKN----------------------------HMKTVHDCFMP 258

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255918127|ref|NP_001157610.1| tramtrack [Tribolium castaneum]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 78/111 (70%), Gaps = 28/111 (25%)

Query: 1   MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
           MSVRGLNLFRYAS+ EG+Y+C ECAKVDV KTFKNKYSFQRHAFLYHEG QRKVFPCPVC
Sbjct: 340 MSVRGLNLFRYASINEGVYQCTECAKVDVQKTFKNKYSFQRHAFLYHEGHQRKVFPCPVC 399

Query: 61  GKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP 111
            KEFSRPDKMKN                            HMKTVHDCFMP
Sbjct: 400 QKEFSRPDKMKN----------------------------HMKTVHDCFMP 422

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401483|ref|XP_003486167.1| PREDICTED: protein tramtrack, alpha isoform-like isoform 2 [Bombus impatiens]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 79/111 (71%), Gaps = 28/111 (25%)

Query: 1   MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
           MSVRGLNLFRYAS++EG+Y+C ECAK+D+ KTFKNKYSFQRHAFLYHEG QRKVFPCPVC
Sbjct: 487 MSVRGLNLFRYASISEGVYQCTECAKLDIQKTFKNKYSFQRHAFLYHEGHQRKVFPCPVC 546

Query: 61  GKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP 111
            KEFSRPDKMKN                            HMKTVHDCFMP
Sbjct: 547 SKEFSRPDKMKN----------------------------HMKTVHDCFMP 569

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007286|gb|EFA03734.1| hypothetical protein TcasGA2_TC013843 [Tribolium castaneum]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 78/111 (70%), Gaps = 28/111 (25%)

Query: 1   MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
           MSVRGLNLFRYAS+ EG+Y+C ECAKVDV KTFKNKYSFQRHAFLYHEG QRKVFPCPVC
Sbjct: 79  MSVRGLNLFRYASINEGVYQCTECAKVDVQKTFKNKYSFQRHAFLYHEGHQRKVFPCPVC 138

Query: 61  GKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP 111
            KEFSRPDKMKN                            HMKTVHDCFMP
Sbjct: 139 QKEFSRPDKMKN----------------------------HMKTVHDCFMP 161

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790849|gb|EFZ15534.1| hypothetical protein SINV_00622 [Solenopsis invicta]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 79/111 (71%), Gaps = 28/111 (25%)

Query: 1   MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
           MSVRGLNLFRYAS++EG+Y+C ECAK+D+ KTFKNKYSFQRHAFLYHEG QRKVFPCPVC
Sbjct: 108 MSVRGLNLFRYASISEGVYQCTECAKLDIQKTFKNKYSFQRHAFLYHEGHQRKVFPCPVC 167

Query: 61  GKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP 111
            KEFSRPDKMKN                            HMKTVHDCFMP
Sbjct: 168 AKEFSRPDKMKN----------------------------HMKTVHDCFMP 190

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157103639|ref|XP_001648067.1| hypothetical protein AaeL_AAEL003947 [Aedes aegypti] gi|108880511|gb|EAT44736.1| AAEL003947-PA [Aedes aegypti]

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 72/76 (94%)

Query: 1   MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
           MSVRGLNLFRYAS+++G+Y+CMECAK +V KTFKNKYSFQRHAFLYHEG QRKVFPCPVC
Sbjct: 205 MSVRGLNLFRYASISDGVYQCMECAKENVQKTFKNKYSFQRHAFLYHEGAQRKVFPCPVC 264

Query: 61  GKEFSRPDKMKNHMKT 76
            KEFSRPDKMKNH+KT
Sbjct: 265 NKEFSRPDKMKNHLKT 280

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047687|ref|XP_001851344.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167870027|gb|EDS33410.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 70/76 (92%)

Query: 1   MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
           MSVRGLNLFRYA +T+G+Y+CMECAK  V KTFKNKYSFQRHAFLYHEG QRKVFPCPVC
Sbjct: 291 MSVRGLNLFRYAQITDGVYQCMECAKESVQKTFKNKYSFQRHAFLYHEGAQRKVFPCPVC 350

Query: 61  GKEFSRPDKMKNHMKT 76
            KEFSRPDKMKNH+KT
Sbjct: 351 NKEFSRPDKMKNHLKT 366

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
FB|FBgn0003870	813	ttk "tramtrack" [Drosophila me	0.539	0.092	0.826	1e-30
FB|FBgn0028991	882	seq "sequoia" [Drosophila mela	0.539	0.085	0.653	4.2e-24
UNIPROTKB|F1LMD3	537	Zfp278 "Protein Zfp278" [Rattu	0.676	0.175	0.384	5.6e-13
RGD|1308337	163	Patz1 "POZ (BTB) and AT hook c	0.467	0.398	0.434	1.1e-12
ZFIN|ZDB-GENE-110913-156	308	si:dkey-179k24.6 "si:dkey-179k	0.834	0.376	0.32	4.7e-12
UNIPROTKB|I3L2Z5	202	MAZ "Myc-associated zinc finge	0.561	0.386	0.385	5e-12
ZFIN|ZDB-GENE-060503-829	345	si:dkey-43f9.1 "si:dkey-43f9.1	0.834	0.336	0.344	6.8e-12
ZFIN|ZDB-GENE-110914-5	352	si:ch211-223a21.5 "si:ch211-22	0.834	0.329	0.344	7.2e-12
ZFIN|ZDB-GENE-110913-168	406	si:ch211-208f21.1 "si:ch211-20	0.568	0.194	0.409	8e-12
ZFIN|ZDB-GENE-110914-11	380	si:ch211-187d1.3 "si:ch211-187	0.834	0.305	0.344	8.7e-12

FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)]

 Score = 348 (127.6 bits), Expect = 1.0e-30, P = 1.0e-30
 Identities = 62/75 (82%), Positives = 68/75 (90%)

Query:     1 MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
             MSVRGL+LFRYASV EG+Y+C ECAK ++ KTFKNKYSFQRHAFLYHEG  RKVFPCPVC
Sbjct:   592 MSVRGLDLFRYASVVEGVYRCTECAKENMQKTFKNKYSFQRHAFLYHEGKHRKVFPCPVC 651

Query:    61 GKEFSRPDKMKNHMK 75
              KEFSRPDKMKNH+K
Sbjct:   652 SKEFSRPDKMKNHLK 666

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0045467 "R7 cell development" evidence=IMP;TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0048053 "R1/R6 development" evidence=IMP

GO:0048750 "compound eye corneal lens morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0028991 seq "sequoia" [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 49/75 (65%), Positives = 60/75 (80%)

Query:     1 MSVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC 60
             MSVRGL++ RY  + +G+  C+ CAK D+ KTFKNKYSFQRHA+L+HEG  RK+F CP+C
Sbjct:   384 MSVRGLDIARYEHIIDGVAYCLVCAKNDIFKTFKNKYSFQRHAYLFHEGQNRKIFACPIC 443

Query:    61 GKEFSRPDKMKNHMK 75
              KEFSRPDKMK H K
Sbjct:   444 NKEFSRPDKMKMHKK 458

GO:0048813 "dendrite morphogenesis" evidence=IMP;TAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0030517 "negative regulation of axon extension" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0007423 "sensory organ development" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0035154 "terminal cell fate specification, open tracheal system" evidence=IMP

UNIPROTKB|F1LMD3 Zfp278 "Protein Zfp278" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
 Identities = 40/104 (38%), Positives = 51/104 (49%)

Query:    10 RYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDK 69
             R  S T     C  C K+     F++ Y   RH  L H G   K + CPVCG  F R D+
Sbjct:   346 RKRSRTRKQVACEICGKI-----FRDVYHLNRHK-LSHSG--EKPYSCPVCGLRFKRKDR 397

Query:    70 MKNHMKT--GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP 111
             M  H+++  G   K + C  CGK FSRPD +  H+K VH    P
Sbjct:   398 MSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP 441

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1308337 Patz1 "POZ (BTB) and AT hook containing zinc finger 1" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 30/69 (43%), Positives = 38/69 (55%)

Query:    45 LYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT--GCQRKVFPCPVCGKEFSRPDKMKNHM 102
             L H G   K + CPVCG  F R D+M  H+++  G   K + C  CGK FSRPD +  H+
Sbjct:     1 LSHSG--EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 58

Query:   103 KTVHDCFMP 111
             K VH    P
Sbjct:    59 KQVHTSERP 67

GO:0003677 "DNA binding" evidence=ISO

GO:0003682 "chromatin binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0007283 "spermatogenesis" evidence=ISO

GO:0008584 "male gonad development" evidence=ISO

GO:0010468 "regulation of gene expression" evidence=ISO

GO:0030217 "T cell differentiation" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

ZFIN|ZDB-GENE-110913-156 si:dkey-179k24.6 "si:dkey-179k24.6" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 4.7e-12, P = 4.7e-12
 Identities = 40/125 (32%), Positives = 56/125 (44%)

Query:     6 LNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFS 65
             LNL       E  + C +C K     +F    +  +H  + H G   K F CP CGK FS
Sbjct:   137 LNLHMRIHTGEKPFTCTQCGK-----SFSLSSNLNKHMKI-HTG--EKPFTCPQCGKSFS 188

Query:    66 RPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASP 125
             +   +  HM+     K F CP CGK FS+   +  HM+ +H    P T PQ  +    S 
Sbjct:   189 QSSHLNKHMRIHTGEKPFTCPQCGKSFSQSSHLNKHMR-IHTGEKPYTCPQCGKSFSQSS 247

Query:   126 VIDFH 130
              ++ H
Sbjct:   248 YLNKH 252

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|I3L2Z5 MAZ "Myc-associated zinc finger protein" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 32/83 (38%), Positives = 45/83 (54%)

Query:    31 KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT--GCQRKVFPCPVC 88
             K F++ Y   RH  L H     K + CPVC + F R D+M  H+++  G   K + C  C
Sbjct:    36 KAFRDVYHLNRHK-LSHS--DEKPYQCPVCQQRFKRKDRMSYHVRSHDGAVHKPYNCSHC 92

Query:    89 GKEFSRPDKMKNHMKTVHDCFMP 111
             GK FSRPD + +H++ VH    P
Sbjct:    93 GKSFSRPDHLNSHVRQVHSTERP 115

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-060503-829 si:dkey-43f9.1 "si:dkey-43f9.1" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 43/125 (34%), Positives = 54/125 (43%)

Query:     6 LNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFS 65
             LNL       E  + C +C K     +F    S   H  + H G   K F CP CGK FS
Sbjct:   137 LNLHMRIHTGEKPFTCTQCGK-----SFSQSSSLNLHVRI-HTG--EKPFTCPQCGKSFS 188

Query:    66 RPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASP 125
                 +  HMK     K F CP CGK FS+   +  HMK +H    P T PQ  +    S 
Sbjct:   189 HSSHLNCHMKIHTGEKPFTCPHCGKSFSQSSHLNCHMK-IHTGEKPFTCPQCGKSFSQSS 247

Query:   126 VIDFH 130
              ++ H
Sbjct:   248 NLNCH 252

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110914-5 si:ch211-223a21.5 "si:ch211-223a21.5" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 7.2e-12, P = 7.2e-12
 Identities = 43/125 (34%), Positives = 54/125 (43%)

Query:     6 LNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFS 65
             LNL       E  + C +C K     +F    S   H  + H G   K F CP CGK FS
Sbjct:   137 LNLHMRIHTGEKPFTCTQCGK-----SFSQSSSLNLHVRI-HTG--EKPFTCPQCGKSFS 188

Query:    66 RPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASP 125
                 +  HMK     K F CP CGK FS+   +  HMK +H    P T PQ  +    S 
Sbjct:   189 HSSHLNCHMKIHTGEKPFTCPHCGKSFSQSSHLNCHMK-IHTGEKPFTCPQCGKSFSQSS 247

Query:   126 VIDFH 130
              ++ H
Sbjct:   248 NLNCH 252

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110913-168 si:ch211-208f21.1 "si:ch211-208f21.1" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 8.0e-12, P = 8.0e-12
 Identities = 36/88 (40%), Positives = 46/88 (52%)

Query:    19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGC 78
             Y C EC K     +F +K S + H  + H G   K F C  CGK F+    +KNHM    
Sbjct:   298 YTCTECGK-----SFPHKSSLKHH-MISHTG--EKPFKCAQCGKSFTTKASLKNHMNGHT 349

Query:    79 QRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
              + VF C  CGK  +R D +KNHMK +H
Sbjct:   350 GKTVFTCDQCGKSLTRKDSIKNHMK-IH 376

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-110914-11 si:ch211-187d1.3 "si:ch211-187d1.3" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 8.7e-12, P = 8.7e-12
 Identities = 43/125 (34%), Positives = 54/125 (43%)

Query:     6 LNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFS 65
             LNL       E  + C +C K     +F    S   H  + H G   K F CP CGK FS
Sbjct:   165 LNLHMRIHTGEKPFTCTQCGK-----SFSQSSSLNLHVRI-HTG--EKPFTCPQCGKSFS 216

Query:    66 RPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASP 125
                 +  HMK     K F CP CGK FS+   +  HMK +H    P T PQ  +    S 
Sbjct:   217 HSSHLNCHMKIHTGEKPFTCPHCGKSFSQSSHLNCHMK-IHTGEKPFTCPQCGKSFSQSS 275

Query:   126 VIDFH 130
              ++ H
Sbjct:   276 NLNCH 280

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42282	TTKA_DROME	No assigned EC number	0.8266	0.5395	0.0922	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
PHA00733	128	PHA00733, PHA00733, hypothetical protein	1e-04
COG5189	423	COG5189, SFP1, Putative transcriptional repressor	0.004

>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 55  FPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHD 107
           + CP+C   FS    +K H++     KV  CPVCGKEF   D   +H+   H+
Sbjct: 74  YVCPLCLMPFSSSVSLKQHIRYTEHSKV--CPVCGKEFRNTDSTLDHVCKKHN 124

Length = 128

>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 21/76 (27%)

Query: 53  KVFPCPV--CGKEFSRPDKMKNHMKTGCQR-------------------KVFPCPVCGKE 91
           K + CPV  C K++   + +K HM  G Q                    K + C VC K 
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKR 407

Query: 92  FSRPDKMKNHMKTVHD 107
           +   + +K H K  HD
Sbjct: 408 YKNLNGLKYHRKHSHD 423

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG2462|consensus	279		99.95
KOG2462|consensus	279		99.92
KOG3576|consensus	267		99.77
KOG3623|consensus	1007		99.68
KOG3608|consensus	467		99.66
KOG1074|consensus	958		99.6
KOG3623|consensus	1007		99.59
KOG1074|consensus	958		99.58
KOG3576|consensus	267		99.55
KOG3608|consensus	467		99.52
PHA00733	128	hypothetical protein	99.24
PHA00733	128	hypothetical protein	99.23
PLN03086	567	PRLI-interacting factor K; Provisional	99.2
PHA02768	55	hypothetical protein; Provisional	99.08
PHA02768	55	hypothetical protein; Provisional	98.88
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.76
PHA00732	79	hypothetical protein	98.69
PLN03086	567	PRLI-interacting factor K; Provisional	98.67
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.62
KOG3993|consensus	500		98.57
PHA00616	44	hypothetical protein	98.4
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.39
PHA00616	44	hypothetical protein	98.1
PHA00732	79	hypothetical protein	98.09
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.05
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.97
KOG3993|consensus	500		97.95
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.79
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.76
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.76
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.7
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.64
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.54
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.53
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.34
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.18
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.12
PRK04860	160	hypothetical protein; Provisional	97.06
smart00355	26	ZnF_C2H2 zinc finger.	96.97
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.83
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.77
smart00355	26	ZnF_C2H2 zinc finger.	96.68
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.67
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.65
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.5
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.45
PRK04860	160	hypothetical protein; Provisional	96.2
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.03
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	95.19
KOG2231|consensus	669		95.1
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.99
KOG2893|consensus	341		94.6
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.37
COG5048	467	FOG: Zn-finger [General function prediction only]	93.8
KOG1146|consensus	1406		93.79
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.07
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.73
COG1592	166	Rubrerythrin [Energy production and conversion]	92.71
KOG2893|consensus	341		92.68
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	92.37
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	91.8
KOG1146|consensus	1406		91.06
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	90.76
COG5048	467	FOG: Zn-finger [General function prediction only]	89.27
COG4049	65	Uncharacterized protein containing archaeal-type C	89.17
PHA00626	59	hypothetical protein	88.75
COG4049	65	Uncharacterized protein containing archaeal-type C	88.55
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	87.54
KOG2482|consensus	423		87.13
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	86.77
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	85.66
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	84.22
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	83.99
KOG2186|consensus	276		83.27
PRK06266	178	transcription initiation factor E subunit alpha; V	82.05
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	80.65
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	80.4

>KOG2462|consensus

Probab=99.95  E-value=5.5e-29  Score=163.50  Aligned_cols=121  Identities=26%  Similarity=0.529  Sum_probs=108.5

Q ss_pred             CcccCceeeeccCC---CcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhc
Q psy7353           2 SVRGLNLFRYASVT---EGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGC   78 (139)
Q Consensus         2 s~~~l~~~~~~~~~---~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~   78 (139)
                      +..+|.+|++.|-.   .+-+.|+.|++     .|.+...|+-|+++ |.    -+..|.+||+.|...|.|+.|+++|+
T Consensus       142 T~snLsrHkQ~H~~~~s~ka~~C~~C~K-----~YvSmpALkMHirT-H~----l~c~C~iCGKaFSRPWLLQGHiRTHT  211 (279)
T KOG2462|consen  142 TSSNLSRHKQTHRSLDSKKAFSCKYCGK-----VYVSMPALKMHIRT-HT----LPCECGICGKAFSRPWLLQGHIRTHT  211 (279)
T ss_pred             cccccchhhcccccccccccccCCCCCc-----eeeehHHHhhHhhc-cC----CCcccccccccccchHHhhccccccc
Confidence            34567777776554   56688999999     89999999999887 63    47899999999999999999999999


Q ss_pred             CCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhccccc
Q psy7353          79 QRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDS  133 (139)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  133 (139)
                      ||+||.|+.|+++|.++++|+.|++| |.+.++|+|..|++.|.....|.+|..+
T Consensus       212 GEKPF~C~hC~kAFADRSNLRAHmQT-HS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  212 GEKPFSCPHCGKAFADRSNLRAHMQT-HSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             CCCCccCCcccchhcchHHHHHHHHh-hcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            99999999999999999999999999 8999999999999999999999999754

>KOG2462|consensus

Probab=99.92  E-value=9e-26  Score=148.43  Aligned_cols=114  Identities=27%  Similarity=0.512  Sum_probs=104.8

Q ss_pred             CCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCC
Q psy7353          15 TEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSR   94 (139)
Q Consensus        15 ~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~   94 (139)
                      ....|.|++||+     .+.+.++|.+|.+.+-..++.+.+.|+.|++.|....+|..|+++|+  .+.+|..||+.|+.
T Consensus       127 ~~~r~~c~eCgk-----~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSR  199 (279)
T KOG2462|consen  127 KHPRYKCPECGK-----SYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSR  199 (279)
T ss_pred             cCCceecccccc-----ccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccc
Confidence            345699999999     99999999999887555556788999999999999999999999997  67899999999999


Q ss_pred             hhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccC
Q psy7353          95 PDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus        95 ~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      ++-|+-|+++ |+|||||.|+.|++.|-++.+|+.|+++|-+
T Consensus       200 PWLLQGHiRT-HTGEKPF~C~hC~kAFADRSNLRAHmQTHS~  240 (279)
T KOG2462|consen  200 PWLLQGHIRT-HTGEKPFSCPHCGKAFADRSNLRAHMQTHSD  240 (279)
T ss_pred             hHHhhccccc-ccCCCCccCCcccchhcchHHHHHHHHhhcC
Confidence            9999999999 9999999999999999999999999999864

>KOG3576|consensus

Probab=99.77  E-value=9.1e-20  Score=115.51  Aligned_cols=115  Identities=23%  Similarity=0.405  Sum_probs=103.4

Q ss_pred             CCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCC
Q psy7353          14 VTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFS   93 (139)
Q Consensus        14 ~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   93 (139)
                      .+...|.|..|+|     .|.-.-.|.+|+.. |..  .+.+.|..||++|.+.-+|++|+++|+|.+||.|..|+++|.
T Consensus       113 sd~d~ftCrvCgK-----~F~lQRmlnrh~kc-h~~--vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaft  184 (267)
T KOG3576|consen  113 SDQDSFTCRVCGK-----KFGLQRMLNRHLKC-HSD--VKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFT  184 (267)
T ss_pred             CCCCeeeeehhhh-----hhhHHHHHHHHhhh-ccH--HHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHH
Confidence            3456699999999     89999899999876 655  788999999999999999999999999999999999999999


Q ss_pred             ChhHHHhhhhhhcCC----------CCCCCCCCCCCCCCCCcchhcccccccC
Q psy7353          94 RPDKMKNHMKTVHDC----------FMPATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus        94 ~~~~l~~H~~~~h~~----------~~~~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      +..+|..|.+.+|..          ++.|.|++||+.-.....+..|++.+|.
T Consensus       185 qrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  185 QRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             hhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            999999999877763          4558999999999999999999998874

>KOG3623|consensus

Probab=99.68  E-value=2.2e-17  Score=121.05  Aligned_cols=110  Identities=25%  Similarity=0.468  Sum_probs=98.9

Q ss_pred             ceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCC-------------Cccc
Q psy7353          18 IYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQR-------------KVFP   84 (139)
Q Consensus        18 ~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~-------------~~~~   84 (139)
                      ...|++|..     ++.....|+.|+...|... +..|.|..|...|.....|.+|+..|...             +-|+
T Consensus       210 lltcpycdr-----gykrltslkeHikyrhekn-e~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFK  283 (1007)
T KOG3623|consen  210 LLTCPYCDR-----GYKRLTSLKEHIKYRHEKN-EPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFK  283 (1007)
T ss_pred             hhcchhHHH-----HHHHHHHHHHHHHHHHhhC-CCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccc
Confidence            367999998     9999999999998877653 45789999999999999999999987532             5699


Q ss_pred             CCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccc
Q psy7353          85 CPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus        85 C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      |.+||++|+.+-.|..|+++ |.|++||.|+.|+++|+..+.+..|+.++
T Consensus       284 CtECgKAFKfKHHLKEHlRI-HSGEKPfeCpnCkKRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  284 CTECGKAFKFKHHLKEHLRI-HSGEKPFECPNCKKRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             ccccchhhhhHHHHHhhhee-ecCCCCcCCcccccccccCCccccccccc
Confidence            99999999999999999999 99999999999999999999999998765

>KOG3608|consensus

Probab=99.66  E-value=8.6e-18  Score=114.41  Aligned_cols=125  Identities=18%  Similarity=0.309  Sum_probs=97.1

Q ss_pred             CcccCceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCC
Q psy7353           2 SVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRK   81 (139)
Q Consensus         2 s~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~   81 (139)
                      ++..|..|+++|.+++...|+.||.     .|.....|-.|.+..... ...+|.|..|.+.|..+..|..|+..|-  .
T Consensus       191 ~k~~LreH~r~Hs~eKvvACp~Cg~-----~F~~~tkl~DH~rRqt~l-~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n  262 (467)
T KOG3608|consen  191 NKYRLREHIRTHSNEKVVACPHCGE-----LFRTKTKLFDHLRRQTEL-NTNSFQCAQCFKRFATEKLLKSHVVRHV--N  262 (467)
T ss_pred             cHHHHHHHHHhcCCCeEEecchHHH-----HhccccHHHHHHHhhhhh-cCCchHHHHHHHHHhHHHHHHHHHHHhh--h
Confidence            3456788899999999999999998     888888888887642222 2457778888888888888888877764  3


Q ss_pred             cccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccc
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      -|.|+.|+-....++.|..|++.-|..++||+|+.|++.|....+|.+|.+.|
T Consensus       263 ~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~H  315 (467)
T KOG3608|consen  263 CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVH  315 (467)
T ss_pred             cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhc
Confidence            57788888888888888888887777788888888888888888888887744

>KOG1074|consensus

Probab=99.60  E-value=3.4e-16  Score=116.28  Aligned_cols=84  Identities=23%  Similarity=0.466  Sum_probs=71.1

Q ss_pred             eecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCC----CCCCCC---CCCCCCCCCcch
Q psy7353          55 FPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCF----MPATTP---QGQRGQRASPVI  127 (139)
Q Consensus        55 ~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~----~~~~C~---~C~~~f~~~~~l  127 (139)
                      -.|-+|.+.+.-.++|+.|++.|+|++||+|.+||++|..+.+|+.|+.. |...    -++.|+   +|...|+..-.|
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~v-Hka~p~~R~q~ScP~~~ic~~kftn~V~l  684 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSV-HKAKPPARVQFSCPSTFICQKKFTNAVTL  684 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccc-cccCccccccccCCchhhhcccccccccc
Confidence            44888999999999999999999999999999999999999999999887 4322    348899   899999999999


Q ss_pred             hcccccccCcCC
Q psy7353         128 DFHKDSVFNKDI  139 (139)
Q Consensus       128 ~~H~~~~~~~~~  139 (139)
                      .-|++.|...+|
T Consensus       685 pQhIriH~~~~~  696 (958)
T KOG1074|consen  685 PQHIRIHLGGQI  696 (958)
T ss_pred             cceEEeecCCCC
Confidence            999998886554

>KOG3623|consensus

Probab=99.59  E-value=2.8e-16  Score=115.43  Aligned_cols=83  Identities=17%  Similarity=0.400  Sum_probs=74.5

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhccc
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHK  131 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  131 (139)
                      ...|.|+.|++.|.-.+.|.+|.--|+|.+||+|.+|.++|+.+-.|+.|++. |.|++||+|+.|+++|+..+.+..|+
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRL-HSGEKPfQCdKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRL-HSGEKPFQCDKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhh-ccCCCcchhhhhhhhcccccchHhhh
Confidence            56788999999999999999999999999999999999999999999999998 89999999999999999999998887


Q ss_pred             cccc
Q psy7353         132 DSVF  135 (139)
Q Consensus       132 ~~~~  135 (139)
                      .-.+
T Consensus       971 NHRY  974 (1007)
T KOG3623|consen  971 NHRY  974 (1007)
T ss_pred             ccch
Confidence            6443

>KOG1074|consensus

Probab=99.58  E-value=4.5e-16  Score=115.62  Aligned_cols=52  Identities=19%  Similarity=0.244  Sum_probs=48.4

Q ss_pred             cccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccc
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      |-+|..|.+..+.++.|+.|.++ |+||+||+|.+|++.|+++.+|+.|+--|
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrt-HtGERPFkCKiCgRAFtTkGNLkaH~~vH  656 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRT-HTGERPFKCKICGRAFTTKGNLKAHMSVH  656 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhc-ccCcCccccccccchhccccchhhccccc
Confidence            35699999999999999999999 99999999999999999999999997655

>KOG3576|consensus

Probab=99.55  E-value=4e-16  Score=99.14  Aligned_cols=85  Identities=26%  Similarity=0.485  Sum_probs=79.6

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhccc
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHK  131 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  131 (139)
                      .-.|.|.+|++.|.-..-|.+|++-|...+.+-|..||+.|.+.-+|.+|+++ |+|.+||.|..|++.|+.+..|+.|.
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rt-htgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRT-HTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhcc-ccCccccchhhhhHHHHhhccHHHHH
Confidence            34688999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             ccccCc
Q psy7353         132 DSVFNK  137 (139)
Q Consensus       132 ~~~~~~  137 (139)
                      +..|+.
T Consensus       194 ~kvhgv  199 (267)
T KOG3576|consen  194 KKVHGV  199 (267)
T ss_pred             HHHcCc
Confidence            888753

>KOG3608|consensus

Probab=99.52  E-value=5.7e-15  Score=100.83  Aligned_cols=110  Identities=21%  Similarity=0.336  Sum_probs=70.3

Q ss_pred             ceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCC--CCccCCCh
Q psy7353          18 IYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPV--CGKEFSRP   95 (139)
Q Consensus        18 ~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~   95 (139)
                      -|.|+.|..     +....+.|..|++..|..  .+||+|..|+..+...+.|..|...|. +..|.|..  |.+++.+.
T Consensus       263 ~ykCplCdm-----tc~~~ssL~~H~r~rHs~--dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~  334 (467)
T KOG3608|consen  263 CYKCPLCDM-----TCSSASSLTTHIRYRHSK--DKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTY  334 (467)
T ss_pred             ccccccccc-----CCCChHHHHHHHHhhhcc--CCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHH
Confidence            456666665     566666666666665655  666666666666666666666666555 45566655  66666666


Q ss_pred             hHHHhhhhhhcCCCC--CCCCCCCCCCCCCCcchhccccccc
Q psy7353          96 DKMKNHMKTVHDCFM--PATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus        96 ~~l~~H~~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      .++.+|.+.+|.|.+  +|.|-.|++.|++-.+|..|....|
T Consensus       335 ~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH  376 (467)
T KOG3608|consen  335 TQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKH  376 (467)
T ss_pred             HHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhh
Confidence            666666666565543  3677777777777777766655554

>PHA00733 hypothetical protein

Probab=99.24  E-value=3.8e-12  Score=77.30  Aligned_cols=82  Identities=18%  Similarity=0.218  Sum_probs=66.4

Q ss_pred             CceeecCCCCCcCCChHHHHHH--H---HHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcc
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNH--M---KTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPV  126 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h--~---~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~  126 (139)
                      .+++.|.+|...+.....|..+  +   ....+.++|.|..|++.|...+.|..|++. +  +.+|.|+.|++.|.....
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~-h--~~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRY-T--EHSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhc-C--CcCccCCCCCCccCCHHH
Confidence            5678888888777766655554  1   133457899999999999999999999987 4  357999999999999999


Q ss_pred             hhcccccccC
Q psy7353         127 IDFHKDSVFN  136 (139)
Q Consensus       127 l~~H~~~~~~  136 (139)
                      |..|+...||
T Consensus       115 L~~H~~~~h~  124 (128)
T PHA00733        115 TLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHhcC
Confidence            9999999886

>PHA00733 hypothetical protein

Probab=99.23  E-value=7.5e-12  Score=76.00  Aligned_cols=97  Identities=22%  Similarity=0.417  Sum_probs=75.4

Q ss_pred             CcccCceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHH----HhccCCCCceeecCCCCCcCCChHHHHHHHHHh
Q psy7353           2 SVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAF----LYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTG   77 (139)
Q Consensus         2 s~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~----~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~   77 (139)
                      |+.+|..........+++.|..|.+     .|.....|..+..    ..+.+  .++|.|+.|++.|.....|..|++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~l~~~~~~~~--~kPy~C~~Cgk~Fss~s~L~~H~r~h   96 (128)
T PHA00733         24 TLEELKRYHSLTPEQKRLIRAVVKT-----LIYNPQLLDESSYLYKLLTSKA--VSPYVCPLCLMPFSSSVSLKQHIRYT   96 (128)
T ss_pred             CHHHhhhhhcCChhhhhHHHHHHhh-----hccChhhhcchHHHHhhcccCC--CCCccCCCCCCcCCCHHHHHHHHhcC
Confidence            4455666655556678899999998     6777666555411    11223  67999999999999999999999875


Q ss_pred             cCCCcccCCCCCccCCChhHHHhhhhhhcC
Q psy7353          78 CQRKVFPCPVCGKEFSRPDKMKNHMKTVHD  107 (139)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (139)
                        ..++.|..|++.|.....|..|+...|+
T Consensus        97 --~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         97 --EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             --CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence              4579999999999999999999987665

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.20  E-value=4.8e-11  Score=87.56  Aligned_cols=110  Identities=21%  Similarity=0.467  Sum_probs=88.9

Q ss_pred             ccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCcc
Q psy7353          12 ASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKE   91 (139)
Q Consensus        12 ~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~   91 (139)
                      ....++.+.|+.|++     .|. ...|..|...+|     +++.|+ |+..+ ....|..|+..+...+++.|..|+..
T Consensus       447 r~el~~H~~C~~Cgk-----~f~-~s~LekH~~~~H-----kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~  513 (567)
T PLN03086        447 VEEAKNHVHCEKCGQ-----AFQ-QGEMEKHMKVFH-----EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDM  513 (567)
T ss_pred             ccccccCccCCCCCC-----ccc-hHHHHHHHHhcC-----CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCc
Confidence            334566789999998     785 577999988744     468899 99754 66899999999999999999999998


Q ss_pred             CCC----------hhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353          92 FSR----------PDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus        92 f~~----------~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      +..          ...|..|...  .|.+++.|..|++.+..+ +|..|....|.+
T Consensus       514 v~~g~~~~d~~d~~s~Lt~HE~~--CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~~  566 (567)
T PLN03086        514 VQAGGSAMDVRDRLRGMSEHESI--CGSRTAPCDSCGRSVMLK-EMDIHQIAVHQK  566 (567)
T ss_pred             cccCccccchhhhhhhHHHHHHh--cCCcceEccccCCeeeeh-hHHHHHHHhhcC
Confidence            852          3589999987  378999999999998887 466888777643

>PHA02768 hypothetical protein; Provisional

Probab=99.08  E-value=9.1e-11  Score=59.88  Aligned_cols=44  Identities=18%  Similarity=0.426  Sum_probs=35.0

Q ss_pred             cccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVID  128 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~  128 (139)
                      -|.|+.||+.|...++|..|+++ |.  ++|.|..|++.|...+.|-
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~-H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK-HN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh-cC--CcccCCcccceecccceeE
Confidence            36788888888888888888888 44  5788888888888777764

>PHA02768 hypothetical protein; Provisional

Probab=98.88  E-value=9.4e-10  Score=56.19  Aligned_cols=44  Identities=18%  Similarity=0.472  Sum_probs=36.0

Q ss_pred             eeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHH
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMK   99 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~   99 (139)
                      .|.|+.||+.|...++|..|++.|+  +++.|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            4788888888888888888888887  6788888888888776654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.76  E-value=2.1e-09  Score=47.14  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=14.2

Q ss_pred             HHhhhhhhcCCCCCCCCCCCCCCCC
Q psy7353          98 MKNHMKTVHDCFMPATTPQGQRGQR  122 (139)
Q Consensus        98 l~~H~~~~h~~~~~~~C~~C~~~f~  122 (139)
                      |.+|+++ |.+++||.|+.|++.|.
T Consensus         2 l~~H~~~-H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRT-HTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHH-HSSSSSEEESSSSEEES
T ss_pred             HHHHhhh-cCCCCCCCCCCCcCeeC
Confidence            5556665 55666666666666554

...

>PHA00732 hypothetical protein

Probab=98.69  E-value=2e-08  Score=55.86  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=17.6

Q ss_pred             ccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCC
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQR  122 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~  122 (139)
                      |.|..|++.|.....|..|++.+|.   ++.|+.|++.|.
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~   38 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR   38 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC
Confidence            4455555555555555555542232   234555555554

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.67  E-value=9.1e-08  Score=70.73  Aligned_cols=103  Identities=20%  Similarity=0.348  Sum_probs=76.1

Q ss_pred             eecCCCCCcchhcccCCHHHHHHHHHHhccC----------------CCCceeecCCCCCcCCChHHHHHHHHHhcCCCc
Q psy7353          19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEG----------------CQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKV   82 (139)
Q Consensus        19 ~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~----------------~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~   82 (139)
                      -.|+-|.+      ......|..|...+.-.                .....+.|+.|++.|. ...|..|+..++  .+
T Consensus       408 V~C~NC~~------~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kp  478 (567)
T PLN03086        408 VECRNCKH------YIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EP  478 (567)
T ss_pred             EECCCCCC------ccchhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--CC
Confidence            46888886      44445666776432111                0135678999999885 677999999875  78


Q ss_pred             ccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCC----------Ccchhccccc
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRA----------SPVIDFHKDS  133 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~----------~~~l~~H~~~  133 (139)
                      +.|+ |+..+ ....|..|+.+ |...+++.|+.|+..|..          ...|..|...
T Consensus       479 v~Cp-Cg~~~-~R~~L~~H~~t-hCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~  536 (567)
T PLN03086        479 LQCP-CGVVL-EKEQMVQHQAS-TCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI  536 (567)
T ss_pred             ccCC-CCCCc-chhHHHhhhhc-cCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh
Confidence            9999 99755 67899999987 788899999999999852          2367777654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.62  E-value=3.1e-08  Score=43.37  Aligned_cols=25  Identities=44%  Similarity=0.988  Sum_probs=20.9

Q ss_pred             HHHHHHHHhcCCCcccCCCCCccCC
Q psy7353          69 KMKNHMKTGCQRKVFPCPVCGKEFS   93 (139)
Q Consensus        69 ~l~~h~~~~~~~~~~~C~~C~~~f~   93 (139)
                      +|..|++.|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4678888888899999999988875

...

>KOG3993|consensus

Probab=98.57  E-value=2.8e-09  Score=74.85  Aligned_cols=85  Identities=15%  Similarity=0.249  Sum_probs=64.0

Q ss_pred             eeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcC-------CC-----------------
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHD-------CF-----------------  109 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~-------~~-----------------  109 (139)
                      .|.|..|...|.+.-.|..|...-..-.-|.|++|+++|..+.+|..|.+=|-+       +.                 
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~  346 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence            467888887888888887777655555567888888888888888888764211       11                 


Q ss_pred             --------CCCCCCCCCCCCCCCcchhcccccccCcC
Q psy7353         110 --------MPATTPQGQRGQRASPVIDFHKDSVFNKD  138 (139)
Q Consensus       110 --------~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  138 (139)
                              -.|.|..|++.|.....|++|..+|+..+
T Consensus       347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~  383 (500)
T KOG3993|consen  347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAP  383 (500)
T ss_pred             ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccc
Confidence                    13889999999999999999999888654

>PHA00616 hypothetical protein

Probab=98.40  E-value=1.1e-07  Score=46.38  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=24.7

Q ss_pred             cccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      ||+|+.||..|...++|..|++. |.+++++.|+.-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~-~hg~~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS-VHKQNKLTLEYF   35 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH-hcCCCccceeEE
Confidence            56777777777777777777776 556677766543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.39  E-value=2.8e-07  Score=47.64  Aligned_cols=51  Identities=22%  Similarity=0.286  Sum_probs=34.5

Q ss_pred             cccCCCCCccCCChhHHHhhhhhhcCCC-CCCCCCCCCCCCCCCcchhccccccc
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKTVHDCF-MPATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      .|.|+.|++ ..+...|..|....|..+ +.+.||.|...++  .+|..|+...|
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            367777877 344567778877666654 5677888887644  36777777665

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=98.10  E-value=1.5e-06  Score=42.41  Aligned_cols=31  Identities=16%  Similarity=0.471  Sum_probs=16.8

Q ss_pred             eecCCCCCcCCChHHHHHHHHHhcCCCcccC
Q psy7353          55 FPCPVCGKEFSRPDKMKNHMKTGCQRKVFPC   85 (139)
Q Consensus        55 ~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (139)
                      |.|+.||..|...+.|..|++.++++.++.|
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            4555555555555555555555555555444

>PHA00732 hypothetical protein

Probab=98.09  E-value=3.5e-06  Score=46.86  Aligned_cols=37  Identities=32%  Similarity=0.672  Sum_probs=17.9

Q ss_pred             eecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCC
Q psy7353          19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFS   65 (139)
Q Consensus        19 ~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~   65 (139)
                      |.|..|++     .|.+...|+.|++..|.+     +.|+.|++.|.
T Consensus         2 y~C~~Cgk-----~F~s~s~Lk~H~r~~H~~-----~~C~~CgKsF~   38 (79)
T PHA00732          2 FKCPICGF-----TTVTLFALKQHARRNHTL-----TKCPVCNKSYR   38 (79)
T ss_pred             ccCCCCCC-----ccCCHHHHHHHhhcccCC-----CccCCCCCEeC
Confidence            45555555     555555555554322321     24555555544

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.05  E-value=1.4e-05  Score=41.20  Aligned_cols=48  Identities=25%  Similarity=0.534  Sum_probs=22.4

Q ss_pred             eecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHH
Q psy7353          19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMK   75 (139)
Q Consensus        19 ~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~   75 (139)
                      |.||.|++     . .+...|..|....|... .+.+.||+|...+.  ..|..|+.
T Consensus         3 f~CP~C~~-----~-~~~~~L~~H~~~~H~~~-~~~v~CPiC~~~~~--~~l~~Hl~   50 (54)
T PF05605_consen    3 FTCPYCGK-----G-FSESSLVEHCEDEHRSE-SKNVVCPICSSRVT--DNLIRHLN   50 (54)
T ss_pred             cCCCCCCC-----c-cCHHHHHHHHHhHCcCC-CCCccCCCchhhhh--hHHHHHHH
Confidence            45566665     3 22345555555544442 23455555554322  24444444

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.97  E-value=4e-06  Score=57.48  Aligned_cols=56  Identities=21%  Similarity=0.420  Sum_probs=38.8

Q ss_pred             CCcccCCC--CCccCCChhHHHhhhhhhc------------------CCCCCCCCCCCCCCCCCCcchhccccccc
Q psy7353          80 RKVFPCPV--CGKEFSRPDKMKNHMKTVH------------------DCFMPATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus        80 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h------------------~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      ++||.|++  |.+.|+..--|.-|+.-.|                  ..++||.|+.|++++...+-|+-|+.-.|
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~Hsh  422 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHSH  422 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecccccC
Confidence            35555544  5555555555555544222                  24589999999999999999999987654

>KOG3993|consensus

Probab=97.95  E-value=4.1e-06  Score=59.39  Aligned_cols=27  Identities=15%  Similarity=0.003  Sum_probs=22.2

Q ss_pred             CCCCCCCCCCCCCCcchhcccccccCc
Q psy7353         111 PATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus       111 ~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      -|.|..|...|.+...|.+|+..-|..
T Consensus       458 ~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  458 GFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             ccccccchHhhhcCcchHhHhhhcChH
Confidence            367888999999999999998877743

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.79  E-value=1.9e-06  Score=37.94  Aligned_cols=22  Identities=36%  Similarity=0.887  Sum_probs=12.2

Q ss_pred             ccCCCCCccCCChhHHHhhhhh
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |.|..|+..|.....|..|++.
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCccCCccCChhHHHHHhHH
Confidence            4555555555555555555554

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.76  E-value=1.3e-05  Score=33.73  Aligned_cols=22  Identities=45%  Similarity=1.165  Sum_probs=11.7

Q ss_pred             ccCCCCCccCCChhHHHhhhhh
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |.|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            3455555555555555555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.76  E-value=2e-06  Score=36.49  Aligned_cols=23  Identities=43%  Similarity=1.128  Sum_probs=12.7

Q ss_pred             ccCCCCCccCCChhHHHhhhhhh
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKTV  105 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~  105 (139)
                      |.|+.|+..|.....|..|+.++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            45666666666666666666553

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.70  E-value=2.5e-05  Score=32.97  Aligned_cols=22  Identities=14%  Similarity=0.166  Sum_probs=10.7

Q ss_pred             CCCCCCCCCCCCcchhcccccc
Q psy7353         113 TTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus       113 ~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      .|+.|++.|.+...|..|+..+
T Consensus         2 ~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    2 QCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             E-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCcCCCCcCCcHHHHHHHHHhh
Confidence            4555555555555555555444

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.64  E-value=2.9e-05  Score=34.03  Aligned_cols=25  Identities=16%  Similarity=0.108  Sum_probs=15.6

Q ss_pred             CCCCCCCCCCCCCCcchhccccccc
Q psy7353         111 PATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus       111 ~~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      ||.|+.|+..|.+...|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            3566666666666666666666554

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.54  E-value=8.5e-05  Score=31.13  Aligned_cols=22  Identities=41%  Similarity=0.794  Sum_probs=14.1

Q ss_pred             eecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          19 YKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        19 ~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      |.|+.|++     .|.+...|+.|++.
T Consensus         1 y~C~~C~~-----~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGK-----SFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTE-----EESSHHHHHHHHHH
T ss_pred             CCCCCCCC-----ccCCHHHHHHHHhH
Confidence            45666666     66666666666643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.53  E-value=1.3e-05  Score=46.47  Aligned_cols=73  Identities=21%  Similarity=0.303  Sum_probs=18.2

Q ss_pred             ecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccc
Q psy7353          56 PCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus        56 ~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      .|..|+..|.....+..|+...++-..-    ....+.....+..+++.  .....+.|..|+..|.+...|..|++++
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~--~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRK--KVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccccccccccccccccccc----ccccccccccccccccc--ccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            3888999999999999998755542211    01112233333333332  1122577888888888888888887764

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.34  E-value=0.00017  Score=41.70  Aligned_cols=74  Identities=23%  Similarity=0.515  Sum_probs=22.0

Q ss_pred             ecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHH
Q psy7353          20 KCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMK   99 (139)
Q Consensus        20 ~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~   99 (139)
                      .|..|+.     .|.+...+..|+...|.-  ..+     ....+.....+....... ....+.|..|+..|.....|.
T Consensus         1 ~C~~C~~-----~f~~~~~l~~H~~~~H~~--~~~-----~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~   67 (100)
T PF12756_consen    1 QCLFCDE-----SFSSVDDLLQHMKKKHGF--DIP-----DQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQ   67 (100)
T ss_dssp             -------------------------------------------------------------SSEEBSSSS-EESSHHHHH
T ss_pred             Ccccccc-----cccccccccccccccccc--ccc-----cccccccccccccccccc-cCCCCCCCccCCCCcCHHHHH
Confidence            4888998     899999999999776653  111     111122333333333322 223689999999999999999


Q ss_pred             hhhhhhc
Q psy7353         100 NHMKTVH  106 (139)
Q Consensus       100 ~H~~~~h  106 (139)
                      .|++.++
T Consensus        68 ~Hm~~~~   74 (100)
T PF12756_consen   68 EHMRSKH   74 (100)
T ss_dssp             HHHHHTT
T ss_pred             HHHcCcc
Confidence            9999743

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.18  E-value=0.00011  Score=32.18  Aligned_cols=22  Identities=9%  Similarity=-0.056  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCCcchhccccc
Q psy7353         112 ATTPQGQRGQRASPVIDFHKDS  133 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~~~  133 (139)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            4566666666666666666654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.12  E-value=0.00013  Score=50.22  Aligned_cols=71  Identities=27%  Similarity=0.514  Sum_probs=44.3

Q ss_pred             CcceecCC--CCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCC
Q psy7353          16 EGIYKCME--CAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFS   93 (139)
Q Consensus        16 ~~~~~C~~--c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   93 (139)
                      ++||.|+.  |.|     .|+....|+-|+..-|..  .+...-+          +-..+.......+||.|++|++.|+
T Consensus       347 ~KpykCpV~gC~K-----~YknqnGLKYH~lhGH~~--~~~~~~p----------~p~~~~~F~~~~KPYrCevC~KRYK  409 (423)
T COG5189         347 GKPYKCPVEGCNK-----KYKNQNGLKYHMLHGHQN--QKLHENP----------SPEKMNIFSAKDKPYRCEVCDKRYK  409 (423)
T ss_pred             CceecCCCCCchh-----hhccccchhhhhhccccC--cccCCCC----------CccccccccccCCceeccccchhhc
Confidence            58899876  666     888888898886432322  1111111          0011122244568999999999888


Q ss_pred             ChhHHHhhhh
Q psy7353          94 RPDKMKNHMK  103 (139)
Q Consensus        94 ~~~~l~~H~~  103 (139)
                      ..--|.-|+.
T Consensus       410 NlNGLKYHr~  419 (423)
T COG5189         410 NLNGLKYHRK  419 (423)
T ss_pred             cCccceeccc
Confidence            8888877765

>PRK04860 hypothetical protein; Provisional

Probab=97.06  E-value=0.00028  Score=44.58  Aligned_cols=40  Identities=8%  Similarity=0.057  Sum_probs=33.5

Q ss_pred             cccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcc
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPV  126 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~  126 (139)
                      +|.|. |+.   ....+.+|.++ +.++++|.|..|+..|....+
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri-~~g~~~YrC~~C~~~l~~~~~  158 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRV-VRGEAVYRCRRCGETLVFKGE  158 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHH-hcCCccEECCCCCceeEEecc
Confidence            68897 986   67788899998 899999999999998876543

>smart00355 ZnF_C2H2 zinc finger

Probab=96.97  E-value=0.00017  Score=30.75  Aligned_cols=21  Identities=10%  Similarity=0.134  Sum_probs=12.3

Q ss_pred             CCCCCCCCCCCCCcchhcccc
Q psy7353         112 ATTPQGQRGQRASPVIDFHKD  132 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~~  132 (139)
                      |.|+.|++.|.....|..|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            345566666666666666655

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.83  E-value=8.1e-05  Score=31.90  Aligned_cols=20  Identities=30%  Similarity=0.909  Sum_probs=9.9

Q ss_pred             cCCCCCccCCChhHHHhhhh
Q psy7353          84 PCPVCGKEFSRPDKMKNHMK  103 (139)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~  103 (139)
                      .|..|+..|.....|..|++
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCcCCHHHHHHHHC
Confidence            34455555555555555443

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.77  E-value=0.00083  Score=28.38  Aligned_cols=23  Identities=35%  Similarity=0.788  Sum_probs=11.7

Q ss_pred             ccCCCCCccCCChhHHHhhhhhhc
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKTVH  106 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h  106 (139)
                      |.|+.|++... ...|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            34556665555 556666665543

>smart00355 ZnF_C2H2 zinc finger

Probab=96.68  E-value=0.0017  Score=27.41  Aligned_cols=22  Identities=45%  Similarity=1.053  Sum_probs=15.1

Q ss_pred             ccCCCCCccCCChhHHHhhhhh
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |.|..|++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHH
Confidence            3566777777777777777664

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.67  E-value=0.0032  Score=31.58  Aligned_cols=30  Identities=20%  Similarity=0.615  Sum_probs=14.6

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRK   81 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~   81 (139)
                      +.|..|++|+..+.+..+|.+|+...++.+
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            445566666666666666666665555444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.65  E-value=0.00016  Score=36.19  Aligned_cols=25  Identities=20%  Similarity=0.724  Sum_probs=11.1

Q ss_pred             CCcccCCCCCccCCChhHHHhhhhh
Q psy7353          80 RKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +.|-.|++|+..+.+..+|.+|+.+
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~   46 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEI   46 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHH
T ss_pred             CCCCCCCcchhhccchhhHHHHHHH
Confidence            3455555555555555555555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.50  E-value=0.0022  Score=27.92  Aligned_cols=22  Identities=45%  Similarity=0.920  Sum_probs=18.9

Q ss_pred             ccCCCCCccCCChhHHHhhhhh
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788999999999999988875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.45  E-value=0.00022  Score=30.24  Aligned_cols=24  Identities=8%  Similarity=0.036  Sum_probs=19.3

Q ss_pred             CCCCCCCCCCCCCcchhcccccccC
Q psy7353         112 ATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      |.|+.|++... ...|.+|.+.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            68999999998 8899999998874

>PRK04860 hypothetical protein; Provisional

Probab=96.20  E-value=0.0054  Score=38.85  Aligned_cols=39  Identities=18%  Similarity=0.474  Sum_probs=33.1

Q ss_pred             ceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCCh
Q psy7353          53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRP   95 (139)
Q Consensus        53 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~   95 (139)
                      -+|.|. |+.   ....+..|.++++++++|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            468998 986   667788999999999999999999887654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.03  E-value=0.0036  Score=26.56  Aligned_cols=22  Identities=9%  Similarity=-0.046  Sum_probs=13.2

Q ss_pred             CCCCCCCCCCCCCcchhccccc
Q psy7353         112 ATTPQGQRGQRASPVIDFHKDS  133 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~~~  133 (139)
                      |.|+.|++.|.+...|..|.++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            3466666666666666666554

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=95.19  E-value=0.016  Score=26.49  Aligned_cols=10  Identities=20%  Similarity=0.179  Sum_probs=6.8

Q ss_pred             CCCCCCCCCC
Q psy7353         110 MPATTPQGQR  119 (139)
Q Consensus       110 ~~~~C~~C~~  119 (139)
                      .++.|+.|+.
T Consensus        16 ~~~~CP~Cg~   25 (33)
T cd00350          16 APWVCPVCGA   25 (33)
T ss_pred             CCCcCcCCCC
Confidence            4677777765

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2231|consensus

Probab=95.10  E-value=0.043  Score=42.15  Aligned_cols=97  Identities=15%  Similarity=0.223  Sum_probs=62.5

Q ss_pred             ccCCHHHHHHHHHHhccCCCCceeecCCCC---------CcCCChHHHHHHHHHhcC-CC----cccCCCCCccCCChhH
Q psy7353          32 TFKNKYSFQRHAFLYHEGCQRKVFPCPVCG---------KEFSRPDKMKNHMKTGCQ-RK----VFPCPVCGKEFSRPDK   97 (139)
Q Consensus        32 ~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~---------~~~~~~~~l~~h~~~~~~-~~----~~~C~~C~~~f~~~~~   97 (139)
                      .|.+...|+.|+...|..     +.|..|.         ........|..|+..... +.    .-.|..|...|.....
T Consensus       123 ~~~s~~~Lk~H~~~~H~~-----~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~e  197 (669)
T KOG2231|consen  123 EFKSVENLKNHMRDQHKL-----HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDE  197 (669)
T ss_pred             chhHHHHHHHHHHHhhhh-----hccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHH
Confidence            455778899998766653     3344432         223445566777664332 21    2468889889999999


Q ss_pred             HHhhhhhhcCCCCCCCC---CCCCCCCCCCcchhccccccc
Q psy7353          98 MKNHMKTVHDCFMPATT---PQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus        98 l~~H~~~~h~~~~~~~C---~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      |.+|++..|..  -..|   +.+..-|....+|..|.+..|
T Consensus       198 l~rH~~~~h~~--chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  198 LYRHLRFDHEF--CHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             HHHhhccceeh--eeecCcccccchhcccchHHHHHhhhcC
Confidence            99999875542  1234   234567788888888877766

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.99  E-value=0.0056  Score=28.21  Aligned_cols=23  Identities=4%  Similarity=-0.158  Sum_probs=13.5

Q ss_pred             CCCCCCCCCCCCCCcchhccccc
Q psy7353         111 PATTPQGQRGQRASPVIDFHKDS  133 (139)
Q Consensus       111 ~~~C~~C~~~f~~~~~l~~H~~~  133 (139)
                      +|.|+.|+..|.+...+..|+++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            35566666666666666666543

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893|consensus

Probab=94.60  E-value=0.013  Score=39.24  Aligned_cols=35  Identities=34%  Similarity=0.743  Sum_probs=20.6

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCcc
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKE   91 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~   91 (139)
                      .++| |..|++.|.++.-|+.|++    .+.|+|-.|.+.
T Consensus         9 ~kpw-cwycnrefddekiliqhqk----akhfkchichkk   43 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQK----AKHFKCHICHKK   43 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhh----hccceeeeehhh
Confidence            3454 5566666666666666654    345666666543

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.37  E-value=0.036  Score=23.63  Aligned_cols=19  Identities=53%  Similarity=1.508  Sum_probs=10.1

Q ss_pred             cCCCCCccCCChhHHHhhhh
Q psy7353          84 PCPVCGKEFSRPDKMKNHMK  103 (139)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~  103 (139)
                      +|+.||+.| ....|.+|++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            455566555 4444555544

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.80  E-value=0.043  Score=39.56  Aligned_cols=55  Identities=16%  Similarity=0.202  Sum_probs=44.0

Q ss_pred             cccCCCCCccCCChhHHHhhhhh-hcCCC--CCCCCC--CCCCCCCCCcchhcccccccC
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKT-VHDCF--MPATTP--QGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~-~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      ++.|..|...|.....|..|.+. .|.++  +++.|+  .|++.|.....+..|...+.+
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  348 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS  348 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccC
Confidence            57778888888888888888883 37777  888888  688888888888888777664

>KOG1146|consensus

Probab=93.79  E-value=0.013  Score=47.74  Aligned_cols=25  Identities=12%  Similarity=0.048  Sum_probs=21.7

Q ss_pred             CCCCCCCCCCCCCCCCcchhccccc
Q psy7353         109 FMPATTPQGQRGQRASPVIDFHKDS  133 (139)
Q Consensus       109 ~~~~~C~~C~~~f~~~~~l~~H~~~  133 (139)
                      -.+|.|..|.+.++...+|..|.++
T Consensus       516 ~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  516 GKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             CCcccceeeeeeeecchHHHHHHHH
Confidence            3578999999999999999999765

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.07  E-value=0.035  Score=36.93  Aligned_cols=13  Identities=8%  Similarity=-0.069  Sum_probs=10.0

Q ss_pred             CCCCCCCCCCCCC
Q psy7353         112 ATTPQGQRGQRAS  124 (139)
Q Consensus       112 ~~C~~C~~~f~~~  124 (139)
                      +.||.||+.|...
T Consensus        49 ~vCP~CgyA~~~~   61 (214)
T PF09986_consen   49 WVCPHCGYAAFEE   61 (214)
T ss_pred             EECCCCCCccccc
Confidence            5799999877654

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.73  E-value=0.047  Score=38.60  Aligned_cols=16  Identities=6%  Similarity=-0.255  Sum_probs=8.3

Q ss_pred             CCCCCcchhccccccc
Q psy7353         120 GQRASPVIDFHKDSVF  135 (139)
Q Consensus       120 ~f~~~~~l~~H~~~~~  135 (139)
                      .|.+...|..|+...|
T Consensus       290 vf~~~~el~~h~~~~h  305 (493)
T COG5236         290 VFPYHTELLEHLTRFH  305 (493)
T ss_pred             EeccHHHHHHHHHHHh
Confidence            4555555555554444

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=92.71  E-value=0.092  Score=33.45  Aligned_cols=25  Identities=40%  Similarity=0.775  Sum_probs=19.7

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQR  119 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~  119 (139)
                      +.|.|++||..              +.|+.|..||.|+.
T Consensus       133 ~~~vC~vCGy~--------------~~ge~P~~CPiCga  157 (166)
T COG1592         133 KVWVCPVCGYT--------------HEGEAPEVCPICGA  157 (166)
T ss_pred             CEEEcCCCCCc--------------ccCCCCCcCCCCCC
Confidence            46999999864              45578899999984

>KOG2893|consensus

Probab=92.68  E-value=0.048  Score=36.55  Aligned_cols=43  Identities=21%  Similarity=0.491  Sum_probs=25.2

Q ss_pred             cceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHH
Q psy7353          17 GIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKN   72 (139)
Q Consensus        17 ~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~   72 (139)
                      ++| |.+|+.     .|-+..-|.+|+..       +.|+|-+|.+.+.....|..
T Consensus        10 kpw-cwycnr-----efddekiliqhqka-------khfkchichkkl~sgpglsi   52 (341)
T KOG2893|consen   10 KPW-CWYCNR-----EFDDEKILIQHQKA-------KHFKCHICHKKLFSGPGLSI   52 (341)
T ss_pred             Cce-eeeccc-----ccchhhhhhhhhhh-------ccceeeeehhhhccCCCcee
Confidence            444 666776     77777766666532       44677777665444444433

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=92.37  E-value=0.089  Score=35.73  Aligned_cols=82  Identities=21%  Similarity=0.408  Sum_probs=49.1

Q ss_pred             CCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHH-------HHHH----HhcCCCcc
Q psy7353          15 TEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMK-------NHMK----TGCQRKVF   83 (139)
Q Consensus        15 ~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~-------~h~~----~~~~~~~~   83 (139)
                      +.+.|.|..|..      |...-.--.|+.+....+ ...|+|.-|++.-.. +-|.       .|.+    .....+++
T Consensus       139 GGrif~CsfC~~------flCEDDQFEHQAsCQvLe-~E~~KC~SCNrlGq~-sCLRCK~cfCddHvrrKg~ky~k~k~~  210 (314)
T PF06524_consen  139 GGRIFKCSFCDN------FLCEDDQFEHQASCQVLE-SETFKCQSCNRLGQY-SCLRCKICFCDDHVRRKGFKYEKGKPI  210 (314)
T ss_pred             CCeEEEeecCCC------eeeccchhhhhhhhhhhh-cccccccccccccch-hhhheeeeehhhhhhhcccccccCCCC
Confidence            677899999996      665544444544433322 345777777653221 1111       2222    12234688


Q ss_pred             cCCCCCccCCChhHHHhhhhh
Q psy7353          84 PCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +|+.|+........|..-.++
T Consensus       211 PCPKCg~et~eTkdLSmStR~  231 (314)
T PF06524_consen  211 PCPKCGYETQETKDLSMSTRS  231 (314)
T ss_pred             CCCCCCCcccccccceeeeec
Confidence            999999888887777777666

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=91.80  E-value=0.13  Score=26.70  Aligned_cols=8  Identities=25%  Similarity=0.451  Sum_probs=4.3

Q ss_pred             CCCCCCCC
Q psy7353         111 PATTPQGQ  118 (139)
Q Consensus       111 ~~~C~~C~  118 (139)
                      +|.|+.||
T Consensus        50 ~Y~Cp~CG   57 (61)
T COG2888          50 PYRCPKCG   57 (61)
T ss_pred             ceECCCcC
Confidence            45555554

>KOG1146|consensus

Probab=91.06  E-value=0.076  Score=43.66  Aligned_cols=56  Identities=11%  Similarity=0.153  Sum_probs=42.9

Q ss_pred             CCcccCCCCCccCCChhHHHhhhhhhcC------------------------------------C-----C-CCCCCCCC
Q psy7353          80 RKVFPCPVCGKEFSRPDKMKNHMKTVHD------------------------------------C-----F-MPATTPQG  117 (139)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~------------------------------------~-----~-~~~~C~~C  117 (139)
                      .++|.|..|...++...+|..|++....                                    +     . -.|.|..|
T Consensus       516 ~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc  595 (1406)
T KOG1146|consen  516 GKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVC  595 (1406)
T ss_pred             CCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhh
Confidence            4689999999999999999999764210                                    1     1 13899999


Q ss_pred             CCCCCCCcchhccccccc
Q psy7353         118 QRGQRASPVIDFHKDSVF  135 (139)
Q Consensus       118 ~~~f~~~~~l~~H~~~~~  135 (139)
                      ++.-+-..+|.-|+.+-+
T Consensus       596 ~yetniarnlrihmtss~  613 (1406)
T KOG1146|consen  596 SYETNIARNLRIHMTASP  613 (1406)
T ss_pred             cchhhhhhccccccccCC
Confidence            999888888988876543

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=90.76  E-value=0.25  Score=22.70  Aligned_cols=25  Identities=32%  Similarity=0.591  Sum_probs=14.4

Q ss_pred             cccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCC
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQR  119 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~  119 (139)
                      .|.|..||..+...             +.|..|+.|+.
T Consensus         2 ~~~C~~CG~i~~g~-------------~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGE-------------EAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECC-------------cCCCcCcCCCC
Confidence            36677777543211             23567777775

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=89.27  E-value=0.18  Score=36.38  Aligned_cols=60  Identities=35%  Similarity=0.704  Sum_probs=44.4

Q ss_pred             eeecCCCCCcCCChHHHHHHHH--HhcCC--CcccCC--CCCccCCChhHHHhhhhhhcCCCCCCCC
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMK--TGCQR--KVFPCP--VCGKEFSRPDKMKNHMKTVHDCFMPATT  114 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~--~~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~C  114 (139)
                      ++.|..|...+.....+..|..  .|.++  +++.|+  .|++.|.+...+..|..+ |.+..+..+
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  354 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILL-HTSISPAKE  354 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccc-ccCCCcccc
Confidence            5667777777888888888877  67777  788887  688888888888888776 555555444

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.17  E-value=0.051  Score=27.79  Aligned_cols=29  Identities=28%  Similarity=0.629  Sum_probs=19.2

Q ss_pred             cCCCcccCCCCCccCCChhHHHhhhhhhc
Q psy7353          78 CQRKVFPCPVCGKEFSRPDKMKNHMKTVH  106 (139)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  106 (139)
                      .|+..+.|+.|+..|.+.-+..+|...-|
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            45556677777777777777777766534

>PHA00626 hypothetical protein

Probab=88.75  E-value=0.15  Score=26.09  Aligned_cols=14  Identities=0%  Similarity=-0.299  Sum_probs=7.9

Q ss_pred             CCCCCCCCCCCCCC
Q psy7353         110 MPATTPQGQRGQRA  123 (139)
Q Consensus       110 ~~~~C~~C~~~f~~  123 (139)
                      ..|.|+.|++.|+.
T Consensus        22 nrYkCkdCGY~ft~   35 (59)
T PHA00626         22 DDYVCCDCGYNDSK   35 (59)
T ss_pred             cceEcCCCCCeech
Confidence            34666666665554

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=88.55  E-value=0.38  Score=24.65  Aligned_cols=31  Identities=23%  Similarity=0.493  Sum_probs=22.5

Q ss_pred             ccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhc
Q psy7353          12 ASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYH   47 (139)
Q Consensus        12 ~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~   47 (139)
                      .-+++..+.|+-|+.     .|.....+.+|....|
T Consensus        11 ~RDGE~~lrCPRC~~-----~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          11 DRDGEEFLRCPRCGM-----VFRRRKDYIRHVNKAH   41 (65)
T ss_pred             ccCCceeeeCCchhH-----HHHHhHHHHHHhhHHh
Confidence            456677788888888     7888777777765434

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=87.54  E-value=0.38  Score=25.03  Aligned_cols=10  Identities=30%  Similarity=0.272  Sum_probs=5.5

Q ss_pred             CCCCCCCCCC
Q psy7353         110 MPATTPQGQR  119 (139)
Q Consensus       110 ~~~~C~~C~~  119 (139)
                      .+|.|+.||.
T Consensus        47 ~~Y~CP~CGF   56 (59)
T PRK14890         47 NPYTCPKCGF   56 (59)
T ss_pred             CceECCCCCC
Confidence            3556666653

>KOG2482|consensus

Probab=87.13  E-value=0.73  Score=32.78  Aligned_cols=51  Identities=20%  Similarity=0.265  Sum_probs=40.0

Q ss_pred             ccCCCCCccCCChhHHHhhhhhhcCCC----------C----------------CCCCCCCCCCCCCCcchhccccc
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKTVHDCF----------M----------------PATTPQGQRGQRASPVIDFHKDS  133 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~~~----------~----------------~~~C~~C~~~f~~~~~l~~H~~~  133 (139)
                      ..|..|......+..|..|+++.|.-+          +                .-.|..|+..|-....|..|+..
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e  356 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE  356 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence            478889888888999999998876511          0                12588999999999999999654

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=86.77  E-value=0.21  Score=31.48  Aligned_cols=15  Identities=0%  Similarity=-0.274  Sum_probs=8.9

Q ss_pred             CCCCCCCCCCCCCcc
Q psy7353         112 ATTPQGQRGQRASPV  126 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~  126 (139)
                      ++|+.|+.+|.+.-.
T Consensus        29 ~~c~~c~~~f~~~e~   43 (154)
T PRK00464         29 RECLACGKRFTTFER   43 (154)
T ss_pred             eeccccCCcceEeEe
Confidence            566666666665443

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=85.66  E-value=1.3  Score=28.15  Aligned_cols=17  Identities=24%  Similarity=0.442  Sum_probs=7.9

Q ss_pred             CcccCCCCCccCCChhH
Q psy7353          81 KVFPCPVCGKEFSRPDK   97 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~   97 (139)
                      .-|.|+.|+..|+....
T Consensus       108 ~~Y~Cp~c~~r~tf~eA  124 (158)
T TIGR00373       108 MFFICPNMCVRFTFNEA  124 (158)
T ss_pred             CeEECCCCCcEeeHHHH
Confidence            34455555544444433

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>TIGR00622 ssl1 transcription factor ssl1

Probab=84.22  E-value=1.9  Score=25.65  Aligned_cols=47  Identities=11%  Similarity=-0.005  Sum_probs=26.4

Q ss_pred             CCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccc
Q psy7353          85 CPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus        85 C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      |..|...|........  .. -.....|.|+.|...|=..-++.-|..-|
T Consensus        58 C~~C~~~f~~~~~~~~--~~-~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        58 CFGCQGPFPKPPVSPF--DE-LKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             ccCcCCCCCCcccccc--cc-cccccceeCCCCCCccccccchhhhhhcc
Confidence            6677776655431110  00 11233577888888877777766665444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=83.99  E-value=1  Score=26.70  Aligned_cols=15  Identities=40%  Similarity=0.957  Sum_probs=8.0

Q ss_pred             CcccCCCCCccCCCh
Q psy7353          81 KVFPCPVCGKEFSRP   95 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~   95 (139)
                      .|..|+.||..|.-.
T Consensus        25 ~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   25 DPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCccCCCCCCccCcc
Confidence            455566666555444

The function of members of this family is unknown.

>KOG2186|consensus

Probab=83.27  E-value=0.89  Score=30.95  Aligned_cols=49  Identities=31%  Similarity=0.553  Sum_probs=35.7

Q ss_pred             ceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHh
Q psy7353          18 IYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTG   77 (139)
Q Consensus        18 ~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~   77 (139)
                      .|.|..||.      -.-+-.+.+|+..++    ...|.|-.|+..|.. ..+..|..--
T Consensus         3 ~FtCnvCgE------svKKp~vekH~srCr----n~~fSCIDC~k~F~~-~sYknH~kCI   51 (276)
T KOG2186|consen    3 FFTCNVCGE------SVKKPQVEKHMSRCR----NAYFSCIDCGKTFER-VSYKNHTKCI   51 (276)
T ss_pred             EEehhhhhh------hccccchHHHHHhcc----CCeeEEeeccccccc-chhhhhhhhc
Confidence            478999996      333446777876656    357899999999988 6678886633

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=82.05  E-value=2.1  Score=27.79  Aligned_cols=14  Identities=36%  Similarity=0.790  Sum_probs=6.5

Q ss_pred             cccCCCCCccCCCh
Q psy7353          82 VFPCPVCGKEFSRP   95 (139)
Q Consensus        82 ~~~C~~C~~~f~~~   95 (139)
                      .|.|+.|+..|+..
T Consensus       117 ~Y~Cp~C~~rytf~  130 (178)
T PRK06266        117 FFFCPNCHIRFTFD  130 (178)
T ss_pred             EEECCCCCcEEeHH
Confidence            34555555444433

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=80.65  E-value=0.88  Score=21.43  Aligned_cols=11  Identities=36%  Similarity=1.153  Sum_probs=6.1

Q ss_pred             ccCCCCCccCC
Q psy7353          83 FPCPVCGKEFS   93 (139)
Q Consensus        83 ~~C~~C~~~f~   93 (139)
                      |.|..||..|.
T Consensus         6 y~C~~Cg~~fe   16 (41)
T smart00834        6 YRCEDCGHTFE   16 (41)
T ss_pred             EEcCCCCCEEE
Confidence            45666665553

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=80.40  E-value=0.72  Score=22.21  Aligned_cols=13  Identities=38%  Similarity=0.986  Sum_probs=7.2

Q ss_pred             ccCCCCCccCCCh
Q psy7353          83 FPCPVCGKEFSRP   95 (139)
Q Consensus        83 ~~C~~C~~~f~~~   95 (139)
                      |.|..||..|...
T Consensus         6 y~C~~Cg~~fe~~   18 (42)
T PF09723_consen    6 YRCEECGHEFEVL   18 (42)
T ss_pred             EEeCCCCCEEEEE
Confidence            5566666555433

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		1e-10
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		9e-10
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		4e-09
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-07
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		1e-07
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		3e-07
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		3e-07
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		4e-07
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		5e-07
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		5e-07
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		5e-07
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		6e-06
2drp_A	66	The Crystal Structure Of A Two Zinc-Finger Peptide		2e-05
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		3e-05
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		1e-04
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		1e-04
2wbt_A	129	The Structure Of A Double C2h2 Zinc Finger Protein		3e-04
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		7e-04

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 12  ASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMK 71
           +S + G+  C  C K+     F++ Y   RH  L H G   K + CPVCG  F R D+M 
Sbjct: 2   SSGSSGV-ACEICGKI-----FRDVYHLNRHK-LSHSG--EKPYSCPVCGLRFKRKDRMS 52
Query: 72  NHMKT--GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHD 107
            H+++  G   K + C  CGK FSRPD +  H+K VH 
Sbjct: 53  YHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 16  EGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMK 75
           E  YKC EC K     +F    + Q+H    H G   K + CP CGK FS+   ++ H +
Sbjct: 2   EKPYKCPECGK-----SFSQSSNLQKHQRT-HTG--EKPYKCPECGKSFSQSSDLQKHQR 53
Query: 76  TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           T    K + CP CGK FSR D +  H +T
Sbjct: 54  THTGEKPYKCPECGKSFSRSDHLSRHQRT 82

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 6   LNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFS 65
           L   +     E  YKC EC K     +F  + + + H    H G   K + CP CGK FS
Sbjct: 65  LTRHQRTHTGEKPYKCPECGK-----SFSQRANLRAHQRT-HTG--EKPYACPECGKSFS 116
Query: 66  RPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           +   ++ H +T    K + CP CGK FSR D +  H +T
Sbjct: 117 QLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT 155

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGK 90
           + F    S  RH  + H G  +K F C +C + FSR D +  H++T    K F C +CG+
Sbjct: 14  RRFSQSGSLTRHIRI-HTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 91  EFSRPDKMKNHMK 103
           +F+R D+ K H K
Sbjct: 71  KFARSDERKRHTK 83

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGK 90
           + F +  +  RH  + H G  +K F C +C + FSR D +  H++T    K F C +CG+
Sbjct: 14  RRFSDSSNLTRHIRI-HTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 91  EFSRPDKMKNHMK 103
           +F+R D+ K H K
Sbjct: 71  KFARSDERKRHTK 83

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGK 90
           + F       RH  + H G  +K F C +C + FSR D +  H++T    K F C +CG+
Sbjct: 14  RRFSRSADLTRHIRI-HTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 91  EFSRPDKMKNHMK 103
           +F+R D+ K H K
Sbjct: 71  KFARSDERKRHTK 83

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGK 90
           + F       RH  + H G  +K F C +C + FSR D +  H++T    K F C +CG+
Sbjct: 14  RRFSRSAELTRHIRI-HTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 91  EFSRPDKMKNHMK 103
           +F+R D+ K H K
Sbjct: 71  KFARSDERKRHTK 83

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGK 90
           + F       RH  + H G  +K F C +C + FSR D +  H++T    K F C +CG+
Sbjct: 13  RRFSRSDELTRHIRI-HTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 91  EFSRPDKMKNHMK 103
           +F+R D+ K H K
Sbjct: 70  KFARSDERKRHTK 82

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGK 90
           + F       RH  + H G  +K F C +C + FSR D +  H++T    K F C +CG+
Sbjct: 14  RRFSRSDELTRHIRI-HTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 91  EFSRPDKMKNHMK 103
           +F+R D+ K H K
Sbjct: 71  KFARSDERKRHTK 83

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGK 90
           + F       RH  + H G  +K F C +C + FSR D +  H++T    K F C +CG+
Sbjct: 14  RRFSRSDELTRHIRI-HTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 91  EFSRPDKMKNHMK 103
           +F+R D+ K H K
Sbjct: 71  KFARSDERKRHTK 83

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
           K F C +C + FSR D +  H++T    K F C +CG++F+R D+ K H    H
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 55  FPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHD 107
           F C VC + F+R + +K H ++    K +PC +C + F+R D +  H + +H 
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals An Extension To The Rules For Zinc-FingerDNA RECOGNITION Length = 66

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 55  FPCPVCGKEFSRPDKMKNHMKTGCQR--KVFPCPVCGKEFSRPDKMKNHMKTVH 106
           + C VC + ++       H  T  +R  KV+PCP C KEF+R D M  H+K +H
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 55  FPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           + CPV  C + FSR D++  H++    +K F C +C + FSR D +  H++T
Sbjct: 20  YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 23  ECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKV 82
           +C   D  + F      +RH    H G   K F C  C ++FSR D +K H +T    K 
Sbjct: 38  QCDFKDCERRFSRSDQLKRHQ-RRHTGV--KPFQCKTCQRKFSRSDHLKTHTRTHTGEKP 94
Query: 83  FPC--PVCGKEFSRPDKMKNH 101
           F C  P C K+F+R D++  H
Sbjct: 95  FSCRWPSCQKKFARSDELVRH 115

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGK 90
           K+FK   +   H  ++ +    + +PC  CGK F +   MK H       K   C VCGK
Sbjct: 9   KSFKRSSTLSTHLLIHSD---TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 65
Query: 91  EFSRPDKMKNHMK 103
            FS+   +  H +
Sbjct: 66  AFSQSSNLITHSR 78

>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A Hyperthermophilic Archaeal Virus In The Absence Of Dna Length = 129

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 29  VIKTF-KNKYSFQRHAFLYHEGCQRKV--FPCPVCGKEFSRPDKMKNHMKTGCQRKVFPC 85
           ++KT   N       ++LY     + +  F CP+C   FS    +K H++     KV  C
Sbjct: 46  IVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--C 103
Query: 86  PVCGKEFSRPDKMKNHM 102
           PVC KEF+  D   +H+
Sbjct: 104 PVCKKEFTSTDSALDHV 120

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 31  KTFKNKYSFQRHAFLYHEGCQRKVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPCPV- 87
           K+FK KY    H    H G   K FPCP   CGK F+R + +K H +T    K F C   
Sbjct: 70  KSFKAKYKLVNH-IRVHTG--EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFE 126
Query: 88  -CGKEFSRPDKMKNHM 102
            C + F+     K HM
Sbjct: 127 GCDRRFANSSDRKKHM 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-13
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-13
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-13
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-11
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-10
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	7e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-09
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-09
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	4e-09
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-09
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-09
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	9e-09
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-08
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	6e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	4e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	8e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	8e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	9e-07
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	6e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	9e-06
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-05
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	3e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	4e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-05
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	7e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	2e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	6e-04
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	7e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	8e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	8e-04

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 61.7 bits (151), Expect = 1e-13
 Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 20/95 (21%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
             C  C K      F++ Y   RH        +      K + CPVCG  F R D+M  H
Sbjct: 8   VACEICGK-----IFRDVYHLNRH--------KLSHSGEKPYSCPVCGLRFKRKDRMSYH 54

Query: 74  MK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
           ++   G   K + C  CGK FSRPD +  H+K VH
Sbjct: 55  VRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 41.3 bits (98), Expect = 6e-06
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
               C +CGK F     +  H  +    K + CPVCG  F R D+M  H+++
Sbjct: 6   SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 60.2 bits (147), Expect = 2e-13
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
           K + C +C   F++   MK H+          F CP C    +R   +  H++  H
Sbjct: 14  KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.0 bits (105), Expect = 4e-07
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 6/58 (10%)

Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
          Y+C  C        F    + + H  L         F CP C    +R   +  H++ 
Sbjct: 16 YECYICHA-----RFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 59.5 bits (145), Expect = 3e-13
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQR--KVFPCPVCGKEFSRPDKMKNHMKTVH 106
             + C VC + ++       H  T  +R  KV+PCP C KEF+R D M  H+K +H
Sbjct: 9   HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 49.9 bits (120), Expect = 2e-09
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 19 YKCMECAKVDVIKTFKNKYSFQRHA-FLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
          Y+C  C+     + + +  +F RH    +      KV+PCP C KEF+R D M  H+K 
Sbjct: 11 YRCKVCS-----RVYTHISNFCRHYVTSHKRN--VKVYPCPFCFKEFTRKDNMTAHVKI 62

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 57.0 bits (138), Expect = 3e-12
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 55  FPCPVCGKEFSRPDKMKNHMKT---GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP 111
             C +CG    +   +  H +          FPC  CGK F +PD +  H    H   + 
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 112 AT 113
           A 
Sbjct: 68  AP 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
           +C  C       T + K S   H   + E      FPC  CGK F +PD +  H   
Sbjct: 8  LQCEICGF-----TCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 55.0 bits (133), Expect = 2e-11
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 53  KVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           + + CPV  C + FSR D++  H++    +K F C +C + FSR D +  H++T
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 17/97 (17%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPV--CGKEFSRPDKMK 71
           + C        ++ FK +Y    H         R     K   C    C K +SR + +K
Sbjct: 35  FVCHWGGCSRELRPFKAQYMLVVH--------MRRHTGEKPHKCTFEGCRKSYSRLENLK 86

Query: 72  NHMKTGCQRKVFPC--PVCGKEFSRPDKMKNHMKTVH 106
            H+++    K + C    C K FS       H    H
Sbjct: 87  THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 51.4 bits (124), Expect = 3e-09
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCG-----KEFSRPDKMKNH 73
            +   C++      F ++     H    H   +RK F C   G     + F     +  H
Sbjct: 4   CRWDGCSQ-----EFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58

Query: 74  MKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
           M+     K   C    C K +SR + +K H+++
Sbjct: 59  MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 12/62 (19%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQR-----KVFPCPVCG-----KEFSRPDKMKNHM 102
                  C +EF   +++ +H+ +  +      K F C   G     + F     +  HM
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINS--EHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59

Query: 103 KT 104
           + 
Sbjct: 60  RR 61

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 52.9 bits (128), Expect = 2e-10
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 20/93 (21%)

Query: 19  YKCM--ECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMK 71
           Y C    C +      F    S  RH         R     K F C +C + FSR D + 
Sbjct: 5   YACPVESCDR-----RFSQSGSLTRH--------IRIHTGQKPFQCRICMRNFSRSDHLT 51

Query: 72  NHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
            H++T    K F C +CG++F+R D+ K H K 
Sbjct: 52  THIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 52.2 bits (126), Expect = 4e-10
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 53  KVFPC--PVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           K + C    C   F+R D++  H +     K F C VC + FSR D +  HMK 
Sbjct: 44  KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.1 bits (97), Expect = 7e-06
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 52  RKVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPC--PVCGKEFSRPDKMKNHMKT 104
           R++  C    C K +++   +K H++T    K + C    C   F+R D++  H + 
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 50.6 bits (122), Expect = 1e-09
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 19/90 (21%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
           ++C  C +      F        H         R     K F C +CG++F+R D+ K H
Sbjct: 4   FQCRICMR-----NFSRSDHLTTH--------IRTHTGEKPFACDICGRKFARSDERKRH 50

Query: 74  MKTGCQRKVFPCPVCGKEFSRPDKMKNHMK 103
                           +  S+   ++N + 
Sbjct: 51  RDIQHI-LPILEDKVEELLSKNYHLENEVA 79

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 50.6 bits (122), Expect = 2e-09
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           K F C +C + FSR D +  H++T    K F C +CG++F+R D+ K H   
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 50.3 bits (119), Expect = 4e-09
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 26  KVDVIKTFKNKYSFQRHAFLYHEGCQR--KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVF 83
           +  V     N       ++LY     +    F CP+C   FS    +K H++        
Sbjct: 44  RAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRY--TEHTK 101

Query: 84  PCPVCGKEFSRPDKMKNHMKTVH 106
            CPVC KEF+  D   +H+   H
Sbjct: 102 VCPVCKKEFTSTDSALDHVCKKH 124

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 49.8 bits (120), Expect = 6e-09
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRH--AFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
           ++C +C K      +  K +   H      +     +VF C VC + F R  +++ HM +
Sbjct: 36  FECPKCGK-----CYFRKENLLEHEARNCMNRS--EQVFTCSVCQETFRRRMELRLHMVS 88

Query: 77  GCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
                 + C  C ++F +   +++HM  +H
Sbjct: 89  HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 49.8 bits (120), Expect = 6e-09
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 25/96 (26%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
            +C  C K      F +KY  + H         R     K F CP CGK + R + +  H
Sbjct: 8   VECPTCHK-----KFLSKYYLKVH--------NRKHTGEKPFECPKCGKCYFRKENLLEH 54

Query: 74  MK-----TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
                       +VF C VC + F R  +++ HM +
Sbjct: 55  EARNCMNRS--EQVFTCSVCQETFRRRMELRLHMVS 88

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 22/52 (42%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
               CP C K+F     +K H +     K F CP CGK + R + +  H   
Sbjct: 6   SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR 57

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 48.3 bits (116), Expect = 9e-09
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 20/94 (21%)

Query: 18  IYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPC--PVCGKEFSRPDKM 70
                 C K     T+      + H         R     K + C    CG +F+R D++
Sbjct: 7   TCDYAGCGK-----TYTKSSHLKAH--------LRTHTGEKPYHCDWDGCGWKFARSDEL 53

Query: 71  KNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
             H +     + F C  C + FSR D +  HMK 
Sbjct: 54  TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPC--PVCGKEFSRPDKMKNHMKT 104
                  CGK +++   +K H++T    K + C    CG +F+R D++  H + 
Sbjct: 6   HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 13/94 (13%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFL------YHEGCQRKVFPCPVCGKEFSRPDKMKN 72
                C +     TF   +    H  +                 CP  GK F    K+ N
Sbjct: 26  RPKKSCDR-----TFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80

Query: 73  HMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
           H++     K FPCP   CGK F+R + +K H +T
Sbjct: 81  HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 14/72 (19%)

Query: 47  HEGCQR-----KVFPCPVCGKEFSRPDKMKNHM---------KTGCQRKVFPCPVCGKEF 92
              C+         P   C + FS   ++  H+         +         CP  GK F
Sbjct: 13  ELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSF 72

Query: 93  SRPDKMKNHMKT 104
               K+ NH++ 
Sbjct: 73  KAKYKLVNHIRV 84

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 22/95 (23%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPV--CGKEFSRPDKMK 71
            +C    K     +FK KY    H         R     K FPCP   CGK F+R + +K
Sbjct: 63  EECPREGK-----SFKAKYKLVNH--------IRVHTGEKPFPCPFPGCGKIFARSENLK 109

Query: 72  NHMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
            H +T    K F C    C + F+     K HM  
Sbjct: 110 IHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 7/47 (14%), Positives = 14/47 (29%)

Query: 60  CGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
            G       +  +       +   P   C + FS   ++  H+   H
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 46.8 bits (112), Expect = 4e-08
 Identities = 20/75 (26%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYH-EGCQRKVFPCPVCGKEFSRPDKMKNHMKTG 77
          Y C  C K     TF+ K     H   YH        F C  CGK F+R + M  H    
Sbjct: 16 YACSHCDK-----TFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70

Query: 78 CQRKVFPCPVCGKEF 92
                     G   
Sbjct: 71 AGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKT----GCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           K + C  C K F +   +  H K           F C  CGK F+R + M  H   
Sbjct: 14  KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 46.7 bits (112), Expect = 8e-08
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 22/95 (23%)

Query: 19  YKC--MECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMK 71
           Y+C   +C +      F      +RH        QR     K F C  C ++FSR D +K
Sbjct: 37  YQCDFKDCER-----RFSRSDQLKRH--------QRRHTGVKPFQCKTCQRKFSRSDHLK 83

Query: 72  NHMKTGCQRKVFPC--PVCGKEFSRPDKMKNHMKT 104
            H +T    K F C  P C K+F+R D++  H   
Sbjct: 84  THTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 58  PVCGKEFSRPDKMKNHMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
           P C K + +   ++ H +     K + C    C + FSR D++K H + 
Sbjct: 12  PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 45.5 bits (107), Expect = 2e-07
 Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 8/94 (8%)

Query: 16  EGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEG--CQRKVFPCPVCGKEFSRPDKMKNH 73
              ++C +C+       +        H            +            R   +   
Sbjct: 17  ASKFRCKDCSA-----AYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM 71

Query: 74  MKTGCQRKVFPCPVCGKEFSRPDKMKNHM-KTVH 106
                 +KV  C  CG  F     +  HM KT H
Sbjct: 72  EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 44.3 bits (106), Expect = 4e-07
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 18/91 (19%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
           +KC  C K      F  K   + H         R     K + C  C    +    +  H
Sbjct: 9   HKCEVCGK-----CFSRKDKLKTH--------MRCHTGVKPYKCKTCDYAAADSSSLNKH 55

Query: 74  MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           ++     + F C +C        ++  H+++
Sbjct: 56  LRIHSDERPFKCQICPYASRNSSQLTVHLRS 86

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 37.0 bits (87), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 24/52 (46%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
               C VCGK FSR DK+K HM+     K + C  C    +    +  H++ 
Sbjct: 7   GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 44.0 bits (105), Expect = 8e-07
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 22/95 (23%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPV--CGKEFSRPDKMK 71
           + C EC K      F      +RH        Q      K F C    CGK FS    ++
Sbjct: 35  HVCAECGK-----AFVESSKLKRH--------QLVHTGEKPFQCTFEGCGKRFSLDFNLR 81

Query: 72  NHMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
            H++     + + CP   C K+F++   +K+H+ T
Sbjct: 82  THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 21/94 (22%)

Query: 19  YKC--MECAKVDVIKTFKNKYSFQRHAFLYHEGCQR----KVFPCPVCGKEFSRPDKMKN 72
             C    C K      F++  + ++H              +V  C  CGK F    K+K 
Sbjct: 6   IACPHKGCTK-----MFRDNSAMRKH--------LHTHGPRVHVCAECGKAFVESSKLKR 52

Query: 73  HMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
           H       K F C    CGK FS    ++ H++ 
Sbjct: 53  HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 42.5 bits (101), Expect = 9e-07
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
           + F C VC + F+R + +K H ++    K +PC +C + F+R D +  H + +H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 47  HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
           HE   R    CP C   F  P+  + H ++ C+ K   C  C + F     +  H   VH
Sbjct: 35  HERLCRNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93

Query: 107 DCFMPATTPQGQRG 120
           +    A T     G
Sbjct: 94  NQNNMAPTSGPSSG 107

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 42.8 bits (102), Expect = 1e-06
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 22/93 (23%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
           + C  C K     +FK   +   H               + +PC  CGK F +   MK H
Sbjct: 2   FDCKICGK-----SFKRSSTLSTH--------LLIHSDTRPYPCQYCGKRFHQKSDMKKH 48

Query: 74  MK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
               TG   K   C VCGK FS+   +  H + 
Sbjct: 49  TFIHTG--EKPHKCQVCGKAFSQSSNLITHSRK 79

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 20/98 (20%), Positives = 26/98 (26%), Gaps = 22/98 (22%)

Query: 18  IYKCM--ECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPC--PVCGKEFSRPD 68
           +Y C    C K      FK     + H        Q        + C    C K FS P 
Sbjct: 1   MYVCHFENCGK-----AFKKHNQLKVH--------QFSHTQQLPYECPHEGCDKRFSLPS 47

Query: 69  KMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
           ++K H K            C            H+   H
Sbjct: 48  RLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 52  RKVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPC--PVCGKEFSRPDKMKNHMKT 104
            +   C    CGK + +   +K H +T    K F C    C + F+R D++  H +T
Sbjct: 15  IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 41.0 bits (97), Expect = 5e-06
 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 11/78 (14%)

Query: 19 YKC--MECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP--VCGKEFSRPDKMKNHM 74
            C    C +      F N+     H    H    +K F CP   CGK F+    +K HM
Sbjct: 8  MPCDFPGCGR-----IFSNRQYLNHHKKYQHIH--QKSFSCPEPACGKSFNFKKHLKEHM 60

Query: 75 KTGCQRKVFPCPVCGKEF 92
          K     + + C   G   
Sbjct: 61 KLHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.1 bits (92), Expect = 2e-05
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 53  KVFPCPV--CGKEFSRPDKMKNHMK---TGCQRKVFPCP--VCGKEFSRPDKMKNHMKT 104
              PC    CG+ FS    + +H K       +K F CP   CGK F+    +K HMK 
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIH--QKSFSCPEPACGKSFNFKKHLKEHMKL 62

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.8 bits (102), Expect = 5e-06
 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 22/93 (23%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
           YKC EC K     +F +K    RH        QR     K + CP CGK FS+   ++ H
Sbjct: 50  YKCPECGK-----SFSDKKDLTRH--------QRTHTGEKPYKCPECGKSFSQRANLRAH 96

Query: 74  MK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
            +  TG   K + CP CGK FS+   ++ H +T
Sbjct: 97  QRTHTG--EKPYACPECGKSFSQLAHLRAHQRT 127

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.4 bits (101), Expect = 7e-06
 Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
           Y C EC K     +F      + H        QR     K + CP CGK FSR D +  H
Sbjct: 106 YACPECGK-----SFSQLAHLRAH--------QRTHTGEKPYKCPECGKSFSREDNLHTH 152

Query: 74  MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
            +T    K + CP CGK FSR D +  H +T
Sbjct: 153 QRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 18/91 (19%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
           Y C EC      K+F        H        QR     K + CP CGK FS    +  H
Sbjct: 22  YACPECG-----KSFSRSDHLAEH--------QRTHTGEKPYKCPECGKSFSDKKDLTRH 68

Query: 74  MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
            +T    K + CP CGK FS+   ++ H +T
Sbjct: 69  QRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 41.3 bits (98), Expect = 6e-06
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 22/93 (23%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
           + C  C +      F   Y+   H        +R     + + C +C K F R D +++H
Sbjct: 18  FICKFCGR-----HFTKSYNLLIH--------ERTHTDERPYTCDICHKAFRRQDHLRDH 64

Query: 74  MK--TGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
               +    K F C  CGK F +   +  H   
Sbjct: 65  RYIHSK--EKPFKCQECGKGFCQSRTLAVHKTL 95

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 39.9 bits (94), Expect = 9e-06
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 53 KVFPCPVCGKEFSRPDKMKNHMK---TGCQRKVFPCPVCGKEFS 93
          K + C  CGK FSRPD +  H+K   T    +   C V     S
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTS--ERPHKCQVWVSGPS 52

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 39.7 bits (94), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 20/81 (24%)

Query: 19  YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
           Y C  C K      FK K+    H         +     K + C +C K F   D    H
Sbjct: 38  YGCGVCGK-----KFKMKHHLVGH--------MKIHTGIKPYECNICAKRFMWRDSFHRH 84

Query: 74  MKTGCQRKVFPCPVCGKEFSR 94
           + +    K +      +  + 
Sbjct: 85  VTSC--TKSYEAAKAEQNTTE 103

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 39.3 bits (93), Expect = 4e-05
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 19/81 (23%)

Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPCPVCGKEFSRPDKMKNH 73
          Y C +C K     +F +K    RH               + + C VCGK+F     +  H
Sbjct: 11 YPC-QCGK-----SFTHKSQRDRH--------MSMHLGLRPYGCGVCGKKFKMKHHLVGH 56

Query: 74 MKTGCQRKVFPCPVCGKEFSR 94
          MK     K + C +C K F  
Sbjct: 57 MKIHTGIKPYECNICAKRFMW 77

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Length = 76

 Score = 38.8 bits (90), Expect = 3e-05
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 50  CQRKVFPCPV-CGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           C   V PCP  C  + SR D +  H++  C ++   C  CG +FS     ++H   
Sbjct: 12  CSFNVIPCPNRCPMKLSRRD-LPAHLQHDCPKRRLKCEFCGCDFSGEA-YESHEGM 65

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 38.2 bits (88), Expect = 4e-05
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 57  CPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           C  CG    +P  +K H++T    + + C  C   F     +  HMK+
Sbjct: 4   CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 40.1 bits (93), Expect = 6e-05
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 46  YHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           +   C+  +  CP C + F +   +  H+   C R+   C  C    +  D  + H + 
Sbjct: 102 HQAHCEFALMDCPQCQRPFQKFH-INIHILKDCPRRQVSCDNCAASMAFED-KEIHDQN 158

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 96

 Score = 38.7 bits (89), Expect = 7e-05
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 51  QRKVFPCPVCGK-EFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
            +    CP C        + +K HM+  C++++F C  CGK+      MK H+   H
Sbjct: 31  DKGSVSCPTCQAVGRKTIEGLKKHMEN-CKQEMFTCHHCGKQLRSLAGMKYHVMANH 86

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 19/52 (36%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
               C  C    S    ++ H +  C  + F C  C  +  +P  +  HMK 
Sbjct: 8   HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 50  CQRKVFPCPVCGKEFSRPDKMKNHMK---TGCQRKV------FPCPVCGKEFSRPDKMKN 100
             +   P   C + FS   ++  H+     G   +         CP  GK F    K+ N
Sbjct: 21  EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80

Query: 101 HMKT 104
           H++ 
Sbjct: 81  HIRV 84

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 26/99 (26%)

Query: 19  YKCME--CAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPC--PVCGKEFSRPDK 69
           + C E  C K      F + +   RH               K F C    C   F+    
Sbjct: 43  FPCKEEGCEK-----GFTSLHHLTRH--------SLTHTGEKNFTCDSDGCDLRFTTKAN 89

Query: 70  MKNHMK--TGCQRKVFPCPV--CGKEFSRPDKMKNHMKT 104
           MK H       +  V+ C    CGK F + +++K H  +
Sbjct: 90  MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS 128

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 24/100 (24%), Positives = 31/100 (31%), Gaps = 28/100 (28%)

Query: 19  YKCM--ECAKVDVIKTFKNKYSFQRHAFLYHEGCQR-----KVFPC--PVCGKEFSRPDK 69
           Y C    C K      FK     + H        Q        + C    C K FS P +
Sbjct: 105 YVCHFENCGK-----AFKKHNQLKVH--------QFSHTQQLPYECPHEGCDKRFSLPSR 151

Query: 70  MKNHMK--TGCQR-KVFPCPVCGKEFSRPDKMKNHMKTVH 106
           +K H K   G    K   C   GK ++       H+   H
Sbjct: 152 LKRHEKVHAGYPCKKDDSCSFVGKTWTL---YLKHVAECH 188

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 35.5 bits (83), Expect = 6e-04
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           K + C  C   F     + +H       K + C +CG +F+RP  +K H + 
Sbjct: 16  KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 35.4 bits (81), Expect = 7e-04
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 50  CQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH 106
           C  ++  C  C  E S    +K H    C  +   C  CG+     D +K H +   
Sbjct: 13  CPLRLAVCQHCDLELSILK-LKEHEDY-CGARTELCGNCGRNVLVKD-LKTHPEVCG 66

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 34.2 bits (79), Expect = 8e-04
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 53 KVFPCPVCGKEFSRPDKMKNHMKT 76
          K F CP C + FSR D +  H K 
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKR 33

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 34.2 bits (79), Expect = 8e-04
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 81  KVFPCPVCGKEFSRPDKMKNHMKT 104
           K F CP C + FSR D +  H K 
Sbjct: 10  KPFQCPDCDRSFSRSDHLALHRKR 33

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.94
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.93
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.92
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.91
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.91
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.88
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.87
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.84
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.83
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.83
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.83
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.83
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.82
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.82
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.82
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.82
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.82
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.81
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.81
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.81
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.8
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.8
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.8
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.78
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.78
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.78
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.77
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.76
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.76
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.73
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.7
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.7
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.7
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.7
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.69
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.67
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.66
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.65
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.65
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.64
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.64
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.62
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.62
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.61
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.6
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.6
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.59
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.58
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.58
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.58
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.58
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.58
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.57
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.57
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.56
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.56
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.54
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.53
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.52
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.52
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.52
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.51
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.51
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.51
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.49
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.48
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.48
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.47
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.45
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.44
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.41
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.4
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.38
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.36
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.35
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.35
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.35
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.34
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.34
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.34
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.33
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.32
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.31
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.31
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.31
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.3
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.3
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.26
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.23
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.23
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.23
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.23
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.23
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.2
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.19
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.19
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.18
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.17
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.16
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.16
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.15
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.15
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.14
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.12
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.11
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.11
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.1
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.1
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.1
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.09
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.09
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.08
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.07
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.06
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.06
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.05
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.03
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.01
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.0
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.96
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.96
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.94
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.92
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.92
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.91
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.9
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.9
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.87
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.86
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.86
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.85
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.83
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.82
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.81
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.81
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.8
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.79
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.78
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.78
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.78
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.75
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.74
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.74
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.73
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.73
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.72
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.69
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.68
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.61
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.6
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.58
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.52
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.51
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.5
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.39
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.39
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.37
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.37
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.35
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.29
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.29
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.29
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.28
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.28
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.27
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.27
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.26
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.25
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.25
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.24
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.24
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.56
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.55
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.23
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.23
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.22
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.22
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.21
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.21
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.21
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.21
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.2
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.51
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.2
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.19
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.19
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.19
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.18
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.18
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.46
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.16
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.45
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.12
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.12
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.12
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.07
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.0
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.24
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.98
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.97
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.95
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.79
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.6
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.55
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.53
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.15
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.88
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.16
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.98
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.69
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.16
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.53
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.51
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	89.77
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	88.34
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	87.79
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	87.22
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	86.59
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	85.3
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	83.72
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	83.72
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.35
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	80.2

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=3e-28  Score=157.07  Aligned_cols=124  Identities=31%  Similarity=0.631  Sum_probs=87.8

Q ss_pred             cCceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCccc
Q psy7353           5 GLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFP   84 (139)
Q Consensus         5 ~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~   84 (139)
                      .|..|+..|.++++|.|+.|++     .|.+...|..|+.. |.+  .++|.|+.|++.|.....|..|++.|+++++|.
T Consensus        64 ~l~~H~~~h~~~~~~~C~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  135 (190)
T 2i13_A           64 DLTRHQRTHTGEKPYKCPECGK-----SFSQRANLRAHQRT-HTG--EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK  135 (190)
T ss_dssp             HHHHHHHHHHCCCCEECTTTCC-----EESCHHHHHHHHHH-HHT--CCCEECTTTCCEESSHHHHHHHHHHHHCCCCEE
T ss_pred             HHHHHHHhcCCCCCccCcccCC-----ccCCHHHHHHHHHh-cCC--CCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeE
Confidence            4455555555566666666666     66666666666655 333  567777777777777777777777777777888


Q ss_pred             CCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353          85 CPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus        85 C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      |..|++.|.....|..|+++ |.+++||.|+.|++.|.+...|..|++.|+++
T Consensus       136 C~~C~~~f~~~~~L~~H~~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  187 (190)
T 2i13_A          136 CPECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVHQRTHTGK  187 (190)
T ss_dssp             CTTTCCEESCHHHHHHHHHH-HHCCCCEECTTTCCEESSHHHHHHHHTTC---
T ss_pred             CCCCCcccCCHHHHHHHHHh-cCCCCCeECCCCCCccCCHHHHHHHHHhcCCC
Confidence            88888888888888888877 66777888888888888888888888777654

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.94  E-value=2.4e-26  Score=140.48  Aligned_cols=113  Identities=22%  Similarity=0.375  Sum_probs=101.7

Q ss_pred             ccCceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcc
Q psy7353           4 RGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVF   83 (139)
Q Consensus         4 ~~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (139)
                      ..+..+..+++|+++|.|++|++     .|.+...|..|++. |.+  +++|.|+.|++.|.....|..|++.|++++||
T Consensus         8 ~h~~h~~~~h~Gek~y~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   79 (133)
T 2lt7_A            8 KHDDHYELIVDGRVYYICIVCKR-----SYVCLTSLRRHFNI-HSW--EKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY   79 (133)
T ss_dssp             CCSSEEEEEETTEEEEEETTTCC-----EESCHHHHHHHHHH-HHC--CSCEECSSSSCEESSHHHHHHHHHHHHTCCCE
T ss_pred             HHHhhceeecCCCcCeECCCCCC-----CcCCHHHHHHHHHH-cCC--CCCeeCCccCeecccccchhhhccccCCCccc
Confidence            44556678899999999999999     99999999999986 777  89999999999999999999999999999999


Q ss_pred             cCCCCCccCCChhHHHhhhhhhcCC-----CCCCCCCCCCCCCCCC
Q psy7353          84 PCPVCGKEFSRPDKMKNHMKTVHDC-----FMPATTPQGQRGQRAS  124 (139)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~~h~~-----~~~~~C~~C~~~f~~~  124 (139)
                      .|..|++.|.....|..|++++|++     .++|.|..|+..|...
T Consensus        80 ~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           80 QCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             EESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             cCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            9999999999999999999996643     3568999999888654

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.93  E-value=4.6e-27  Score=151.48  Aligned_cols=126  Identities=30%  Similarity=0.584  Sum_probs=104.3

Q ss_pred             cccCceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCc
Q psy7353           3 VRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKV   82 (139)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~   82 (139)
                      ...|..|+..|.++++|.|+.|++     .|.+...|..|+.. |.+  .++|.|+.|++.|.....|..|+..|.++++
T Consensus        34 ~~~l~~H~~~h~~~~~~~C~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  105 (190)
T 2i13_A           34 SDHLAEHQRTHTGEKPYKCPECGK-----SFSDKKDLTRHQRT-HTG--EKPYKCPECGKSFSQRANLRAHQRTHTGEKP  105 (190)
T ss_dssp             SHHHHHGGGCC---CCEECTTTCC-----EESSHHHHHHHHHH-HHC--CCCEECTTTCCEESCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHcCCCCCccCCCcCc-----hhCCHHHHHHHHHh-cCC--CCCccCcccCCccCCHHHHHHHHHhcCCCCC
Confidence            345677777888888888888888     88888888888876 444  6788899999999999999999988888889


Q ss_pred             ccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      |.|..|++.|.....|..|+++ |.++++|.|+.|++.|.+...|..|++.|+++
T Consensus       106 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  159 (190)
T 2i13_A          106 YACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSREDNLHTHQRTHTGE  159 (190)
T ss_dssp             EECTTTCCEESSHHHHHHHHHH-HHCCCCEECTTTCCEESCHHHHHHHHHHHHCC
T ss_pred             CcCCCCCCccCCHHHHHHHHHH-hCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            9999999999999999999888 67788899999999999999999998887753

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=3.3e-26  Score=137.92  Aligned_cols=116  Identities=28%  Similarity=0.491  Sum_probs=106.3

Q ss_pred             cCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHH---hcCCCcccCCCCC
Q psy7353          13 SVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT---GCQRKVFPCPVCG   89 (139)
Q Consensus        13 ~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~---~~~~~~~~C~~C~   89 (139)
                      ..++++|.|+.|++     .|.+...|..|++. |.+  .++|.|+.|++.|.....|..|+..   +.++++|.|..|+
T Consensus         2 s~~~~~~~C~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~   73 (124)
T 2dlq_A            2 SSGSSGVECPTCHK-----KFLSKYYLKVHNRK-HTG--EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQ   73 (124)
T ss_dssp             CCCCSSCCCTTTCC-----CCSSHHHHHHHHHH-HSS--CCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSC
T ss_pred             CCCCCCCCCCCCCC-----cCCCHHHHHHHHHh-CCC--CCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCC
Confidence            35678999999999     99999999999987 555  7899999999999999999999985   5788999999999


Q ss_pred             ccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353          90 KEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus        90 ~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      +.|.....|..|+++ |.+++||.|+.|++.|.+...|..|++..|..
T Consensus        74 ~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           74 ETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             CEESSHHHHHHHHHH-HSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             CccCCHHHHHHHHHH-cCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            999999999999998 78899999999999999999999999877743

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.92  E-value=8.3e-26  Score=135.33  Aligned_cols=112  Identities=29%  Similarity=0.534  Sum_probs=104.4

Q ss_pred             CCCcceecCC--CCCcchhcccCCHHHHHHHHHHhccCCCCceeecC--CCCCcCCChHHHHHHHHHhcCCCcccCCCCC
Q psy7353          14 VTEGIYKCME--CAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP--VCGKEFSRPDKMKNHMKTGCQRKVFPCPVCG   89 (139)
Q Consensus        14 ~~~~~~~C~~--c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~   89 (139)
                      .++++|.|+.  |++     .|.+...|..|++. |.+  .++|.|+  .|++.|.....|..|+..|.++++|.|..|+
T Consensus         2 ~~~~~~~C~~~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   73 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNK-----RYFKLSHLQMHSRK-HTG--EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ   73 (119)
T ss_dssp             CSSCCBCCCSTTSCC-----CBSCHHHHHHHHHH-HHT--TCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             CCCeeeeCCCCCCcc-----hhCCHHHHHHHHHh-hCC--CCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccC
Confidence            4678999997  999     99999999999986 655  7899999  7999999999999999999999999999999


Q ss_pred             ccCCChhHHHhhhhhhcCCCCCCCC--CCCCCCCCCCcchhcccccc
Q psy7353          90 KEFSRPDKMKNHMKTVHDCFMPATT--PQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus        90 ~~f~~~~~l~~H~~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~  134 (139)
                      +.|.....|..|+++ |.++++|.|  +.|++.|.+...|..|++.|
T Consensus        74 ~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           74 RKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CEESCHHHHHHHHHH-HHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             chhCCHHHHHHHHHH-hcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999998 788999999  89999999999999998865

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=7.6e-26  Score=141.29  Aligned_cols=131  Identities=21%  Similarity=0.335  Sum_probs=111.9

Q ss_pred             cccCceeee---ccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC--CCCcCCChHHHHHHHHHh
Q psy7353           3 VRGLNLFRY---ASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV--CGKEFSRPDKMKNHMKTG   77 (139)
Q Consensus         3 ~~~l~~~~~---~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~~   77 (139)
                      ...|..|+.   .|.++++|.|+.|+...+.+.|.+...|..|++. |.+  .++|.|++  |++.|.....|..|++.|
T Consensus        16 ~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~-h~~--~~~~~C~~~~C~~~f~~~~~l~~H~~~h   92 (155)
T 2gli_A           16 QEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTG--EKPHKCTFEGCRKSYSRLENLKTHLRSH   92 (155)
T ss_dssp             HHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHH-HHC--CCCCCCCSTTCCCCCSSHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHh-cCC--CCCccCCCCCCCCcccCHHHHHHHHHHc
Confidence            456777766   6888899998754311111289999999999877 555  78999986  999999999999999999


Q ss_pred             cCCCcccCCC--CCccCCChhHHHhhhhhhcCCCCCCCCCC--CCCCCCCCcchhcccccccC
Q psy7353          78 CQRKVFPCPV--CGKEFSRPDKMKNHMKTVHDCFMPATTPQ--GQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus        78 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~  136 (139)
                      .++++|.|..  |++.|.....|..|++..|.++++|.|+.  |++.|.+...|..|++.+|+
T Consensus        93 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           93 TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             TTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            9999999998  99999999999999943489999999988  99999999999999999875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.91  E-value=3.2e-25  Score=142.84  Aligned_cols=122  Identities=25%  Similarity=0.468  Sum_probs=69.1

Q ss_pred             cCceeeeccCCCcceec--CCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC--CCCCcCCChHHHHHHH-HHh-c
Q psy7353           5 GLNLFRYASVTEGIYKC--MECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP--VCGKEFSRPDKMKNHM-KTG-C   78 (139)
Q Consensus         5 ~l~~~~~~~~~~~~~~C--~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~-~~~-~   78 (139)
                      .|..|++.|.++++|.|  +.|++     .|.+...|..|++. |.+  +++|.|+  .|++.|.....|..|+ ..| .
T Consensus        29 ~L~~H~~~h~~~~~~~C~~~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~  100 (190)
T 1tf6_A           29 KLQAHLCKHTGEKPFPCKEEGCEK-----GFTSLHHLTRHSLT-HTG--EKNFTCDSDGCDLRFTTKANMKKHFNRFHNI  100 (190)
T ss_dssp             HHHHHHHHHHCCCSSCCSSTTCCC-----CCSSHHHHHHHHTT-TTT--CCCEECCSSSCCCEESCHHHHHHHHHTTSST
T ss_pred             HHHHHHHhcCCCCCccCCCCCCCh-----hhCCHHHHHHHHHH-ccC--CCceeCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            34555555555566666  55665     56666666666544 433  4555665  5666666666666665 333 2


Q ss_pred             CCCcccC--CCCCccCCChhHHHhhhhhhcCCCCCCCCCC--CCCCCCCCcchhccccccc
Q psy7353          79 QRKVFPC--PVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ--GQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus        79 ~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~  135 (139)
                      ++++|.|  ..|++.|.....|..|+++ |.+++||.|+.  |++.|.+...|..|++.|+
T Consensus       101 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~  160 (190)
T 1tf6_A          101 KICVYVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA  160 (190)
T ss_dssp             TTSCCEECSSSSCEECSSHHHHHHHHGG-GSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSC
T ss_pred             CcceeeCCCCCCccccCCHHHHHHHHHH-hCCCCCccCCCCCCCchhcCHHHHHHHHHHhC
Confidence            4455566  5566666666666666555 55555666654  6666666666666655544

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.91  E-value=1.7e-24  Score=130.57  Aligned_cols=113  Identities=27%  Similarity=0.500  Sum_probs=101.6

Q ss_pred             CCcceecC--CCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCC--CCc
Q psy7353          15 TEGIYKCM--ECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPV--CGK   90 (139)
Q Consensus        15 ~~~~~~C~--~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~   90 (139)
                      ++++|.|+  .|++     .|.+...|..|+.. | +  .++|.|+.|++.|.....|..|+..|.++++|.|..  |++
T Consensus         2 ~~~~~~C~~~~C~~-----~f~~~~~l~~H~~~-h-~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~   72 (124)
T 1ubd_C            2 EPRTIACPHKGCTK-----MFRDNSAMRKHLHT-H-G--PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK   72 (124)
T ss_dssp             ---CEECCSTTCCC-----EESSHHHHHHHHGG-G-S--CCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCC
T ss_pred             CCCcccCCCCCCcC-----ccCCHHHHHHHHHH-c-C--CCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcC
Confidence            45789999  8999     99999999999876 5 4  789999999999999999999999999999999975  999


Q ss_pred             cCCChhHHHhhhhhhcCCCCCCCCC--CCCCCCCCCcchhcccccccCc
Q psy7353          91 EFSRPDKMKNHMKTVHDCFMPATTP--QGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus        91 ~f~~~~~l~~H~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      .|.....|..|+++ |.++++|.|+  .|++.|.+...|..|++.|+++
T Consensus        73 ~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~  120 (124)
T 1ubd_C           73 RFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA  120 (124)
T ss_dssp             EESCHHHHHHHHHH-HHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC--
T ss_pred             ccCCHHHHHHHHHH-hCCCCceECCCCCCCCccCCHHHHHHHHHHHccc
Confidence            99999999999998 7888999995  5999999999999999998853

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.91  E-value=8.9e-25  Score=140.75  Aligned_cols=124  Identities=23%  Similarity=0.416  Sum_probs=112.3

Q ss_pred             cccCceeeeccCCCcceecC--CCCCcchhcccCCHHHHHHHHHHhc-cCCCCceeec--CCCCCcCCChHHHHHHHHHh
Q psy7353           3 VRGLNLFRYASVTEGIYKCM--ECAKVDVIKTFKNKYSFQRHAFLYH-EGCQRKVFPC--PVCGKEFSRPDKMKNHMKTG   77 (139)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~C~--~c~~~~~~~~f~~~~~l~~h~~~~~-~~~~~~~~~c--~~C~~~~~~~~~l~~h~~~~   77 (139)
                      ...|..|+..|.++++|.|+  .|++     .|.+...|..|+...| .+  .++|.|  +.|++.|.....|..|++.|
T Consensus        57 ~~~l~~H~~~h~~~~~~~C~~~~C~~-----~f~~~~~l~~H~~~~h~~~--~~~~~C~~~~C~k~f~~~~~L~~H~~~H  129 (190)
T 1tf6_A           57 LHHLTRHSLTHTGEKNFTCDSDGCDL-----RFTTKANMKKHFNRFHNIK--ICVYVCHFENCGKAFKKHNQLKVHQFSH  129 (190)
T ss_dssp             HHHHHHHHTTTTTCCCEECCSSSCCC-----EESCHHHHHHHHHTTSSTT--TSCCEECSSSSCEECSSHHHHHHHHGGG
T ss_pred             HHHHHHHHHHccCCCceeCCCCCCCC-----ccCCHHHHHHHHHHhcCCC--cceeeCCCCCCccccCCHHHHHHHHHHh
Confidence            45678899999999999999  8999     9999999999985556 44  678999  88999999999999999999


Q ss_pred             cCCCcccCCC--CCccCCChhHHHhhhhhhcCCCCCCCCCC---CCCCCCCCcchhcccccccCc
Q psy7353          78 CQRKVFPCPV--CGKEFSRPDKMKNHMKTVHDCFMPATTPQ---GQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus        78 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~---C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      +++++|.|+.  |++.|.....|..|+++ |.+   |.|+.   |++.|.+...|..|++.|+++
T Consensus       130 ~~~~~~~C~~~~C~k~F~~~~~L~~H~~~-H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          130 TQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAG---YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             SSSCSSBCCSSSCCCBCSSHHHHHHHHTS-SCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             CCCCCccCCCCCCCchhcCHHHHHHHHHH-hCC---CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            9999999988  99999999999999998 665   89999   999999999999999999864

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.91  E-value=3.7e-24  Score=133.70  Aligned_cols=118  Identities=27%  Similarity=0.391  Sum_probs=107.2

Q ss_pred             ccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCce--------eecCCCCCcCCChHHHHHHHHHhcCCCcc
Q psy7353          12 ASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKV--------FPCPVCGKEFSRPDKMKNHMKTGCQRKVF   83 (139)
Q Consensus        12 ~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~--------~~c~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (139)
                      ....+.+|.|..|++     .|.+...|..|++..|.+  ..+        |.|+.|++.|.....|..|++.|.++++|
T Consensus        19 ~~~~~~~~~C~~C~~-----~f~~~~~L~~H~~~~H~~--~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   91 (155)
T 2rpc_A           19 IDEAQLSRPKKSCDR-----TFSTMHELVTHVTMEHVG--GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPF   91 (155)
T ss_dssp             CCTTCCSSSCCCCCC-----CBSSHHHHHHHHHTTTSC--CTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSE
T ss_pred             echhhcccccccCCc-----ccCCHHHHHHHHHhhcCC--CcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcc
Confidence            445677899999999     999999999999876765  332        78999999999999999999999999999


Q ss_pred             cCCC--CCccCCChhHHHhhhhhhcCCCCCCCCCC--CCCCCCCCcchhcccccccCc
Q psy7353          84 PCPV--CGKEFSRPDKMKNHMKTVHDCFMPATTPQ--GQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus        84 ~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      .|..  |++.|.....|..|+++ |.++++|.|+.  |++.|.+...|..|++.|+++
T Consensus        92 ~C~~~~C~~~f~~~~~L~~H~~~-h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~  148 (155)
T 2rpc_A           92 PCPFPGCGKIFARSENLKIHKRT-HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD  148 (155)
T ss_dssp             ECSCTTTCCEESCHHHHHHHHTT-TCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSC
T ss_pred             cCCcCCCCCccCCHHHHHHHHHh-hCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            9998  99999999999999998 88899999996  999999999999999998864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.88  E-value=6.2e-24  Score=129.74  Aligned_cols=90  Identities=20%  Similarity=0.337  Sum_probs=85.5

Q ss_pred             HhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCC
Q psy7353          45 LYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRAS  124 (139)
Q Consensus        45 ~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~  124 (139)
                      ..+.|  +++|.|++|++.|.....|..|++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|++.|...
T Consensus        15 ~~h~G--ek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C~k~F~~~   91 (133)
T 2lt7_A           15 LIVDG--RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERRYQCLACGKSFINY   91 (133)
T ss_dssp             EEETT--EEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHH-HHTCCCEEESSSCCEESSH
T ss_pred             eecCC--CcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccc-cCCCccccCCCCCCCcCCH
Confidence            34777  89999999999999999999999999999999999999999999999999998 8999999999999999999


Q ss_pred             cchhcccccccCc
Q psy7353         125 PVIDFHKDSVFNK  137 (139)
Q Consensus       125 ~~l~~H~~~~~~~  137 (139)
                      ..|..|++.+|++
T Consensus        92 ~~L~~H~~~hh~~  104 (133)
T 2lt7_A           92 QFMSSHIKSVHSQ  104 (133)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHhHHhcCC
Confidence            9999999999864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=9.3e-22  Score=122.67  Aligned_cols=113  Identities=21%  Similarity=0.325  Sum_probs=100.5

Q ss_pred             CcceecCCCCCcchhcccCCHHHHHHHHHH--hccCCCCceeecCCC-----CCcCCChHHHHHHHHHhcCCCcccCCC-
Q psy7353          16 EGIYKCMECAKVDVIKTFKNKYSFQRHAFL--YHEGCQRKVFPCPVC-----GKEFSRPDKMKNHMKTGCQRKVFPCPV-   87 (139)
Q Consensus        16 ~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~--~~~~~~~~~~~c~~C-----~~~~~~~~~l~~h~~~~~~~~~~~C~~-   87 (139)
                      +.++.|+.|++     .|.+...|..|+..  .|.+  .++|.|++|     ++.|.....|..|++.|.++++|.|.. 
T Consensus         1 E~~~~C~~C~~-----~f~~~~~L~~H~~~~h~h~~--~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~   73 (155)
T 2gli_A            1 ETDCRWDGCSQ-----EFDSQEQLVHHINSEHIHGE--RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFE   73 (155)
T ss_dssp             CCBCCBTTCCC-----BCSCHHHHHHHHHHHTSSSC--SSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCST
T ss_pred             CCcCCcCCCcc-----ccCCHHHHHHHHHhhccCCC--CcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCC
Confidence            35789999999     99999999999874  3555  788988753     489999999999999999999999985 


Q ss_pred             -CCccCCChhHHHhhhhhhcCCCCCCCCCC--CCCCCCCCcchhccc-ccccC
Q psy7353          88 -CGKEFSRPDKMKNHMKTVHDCFMPATTPQ--GQRGQRASPVIDFHK-DSVFN  136 (139)
Q Consensus        88 -C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~~~  136 (139)
                       |++.|.....|..|+++ |.++++|.|+.  |++.|.+...|..|+ +.|.+
T Consensus        74 ~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  125 (155)
T 2gli_A           74 GCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN  125 (155)
T ss_dssp             TCCCCCSSHHHHHHHHHH-TTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCCCcccCHHHHHHHHHH-cCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence             99999999999999998 88899999998  999999999999998 55543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=1.3e-20  Score=110.86  Aligned_cols=97  Identities=23%  Similarity=0.388  Sum_probs=88.9

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPV   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~   87 (139)
                      .+++.|.++++|.|+.|++     .|.....|..|++. |    .++|.|++|++.|.....|..|+. |.++++|.|..
T Consensus         6 s~~~~h~~~~~~~C~~C~~-----~f~~~~~l~~H~~~-H----~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~   74 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNA-----KLSSLLEQGSHERL-C----RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLE   74 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCC-----BCSSHHHHHHHHHH-H----HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGG
T ss_pred             ccCcccCCCcCeECCCCCC-----ccCCHHHHHHHHHH-C----CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCcc
Confidence            4567788999999999999     99999999999977 5    368999999999999999999996 99999999999


Q ss_pred             CCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          88 CGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        88 C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |++.|.....|..|++..|.++++|.|+
T Consensus        75 C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           75 CMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             GTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             ccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999998559999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=6.8e-21  Score=114.49  Aligned_cols=101  Identities=22%  Similarity=0.466  Sum_probs=91.5

Q ss_pred             cccCceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHh--ccCCCCceeecCCCCCcCCChHHHHHHHHHhcCC
Q psy7353           3 VRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLY--HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQR   80 (139)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~--~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~   80 (139)
                      ...|..|+..|.++++|.|+.|++     .|.+...|..|+...  +.+  .++|.|++|++.|.....|..|++.|+++
T Consensus        20 ~~~l~~H~~~h~~~~~~~C~~C~~-----~f~~~~~l~~H~~~~~~~~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (124)
T 2dlq_A           20 KYYLKVHNRKHTGEKPFECPKCGK-----CYFRKENLLEHEARNCMNRS--EQVFTCSVCQETFRRRMELRLHMVSHTGE   92 (124)
T ss_dssp             HHHHHHHHHHHSSCCSCBCTTTCC-----BCSSHHHHHHHHHHCCCCSC--CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHhCCCCCCeECCCCCc-----hhcCHHHHHHHHhhhhcCCC--CCCeECCCCCCccCCHHHHHHHHHHcCCC
Confidence            456788888999999999999999     999999999998763  344  78999999999999999999999999999


Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCFM  110 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (139)
                      ++|.|..|++.|.....|..|++..|.++.
T Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           93 MPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             CCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            999999999999999999999987687654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=3.7e-21  Score=110.95  Aligned_cols=89  Identities=22%  Similarity=0.496  Sum_probs=70.3

Q ss_pred             cCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccC
Q psy7353          13 SVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEF   92 (139)
Q Consensus        13 ~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f   92 (139)
                      +.++++|.|+.|++     .|.+...|..|++. |.+  .++|.|+.|++.|.....|..|+..|.++++|.|..|++.|
T Consensus         3 ~~~~~~~~C~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   74 (96)
T 2dmd_A            3 SGSSGPHKCEVCGK-----CFSRKDKLKTHMRC-HTG--VKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYAS   74 (96)
T ss_dssp             CCCCCCCCBTTTTB-----CCCCHHHHHHHGGG-CCC--CCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEE
T ss_pred             CCCCcCeECCCCCC-----ccCCHHHHHHHHHh-cCC--CCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCcc
Confidence            45677888888888     78888888888765 555  67788888888888888888888888888888888888888


Q ss_pred             CChhHHHhhhhhhcCCCC
Q psy7353          93 SRPDKMKNHMKTVHDCFM  110 (139)
Q Consensus        93 ~~~~~l~~H~~~~h~~~~  110 (139)
                      .....|..|+++ |.+++
T Consensus        75 ~~~~~l~~H~~~-h~~~~   91 (96)
T 2dmd_A           75 RNSSQLTVHLRS-HTGDS   91 (96)
T ss_dssp             SSHHHHHHHHTT-CCSCC
T ss_pred             CCHHHHHHHHHH-hcCCC
Confidence            888888888887 45444

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.83  E-value=1.4e-20  Score=110.42  Aligned_cols=94  Identities=27%  Similarity=0.559  Sum_probs=75.6

Q ss_pred             ccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCcc
Q psy7353          12 ASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKE   91 (139)
Q Consensus        12 ~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~   91 (139)
                      ....+++|.|..|++     .|.....|..|++. |.+  .++|.|++|++.|.....|..|+..|.++++|.|..|++.
T Consensus        11 ~~~~~~~~~C~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   82 (106)
T 2ee8_A           11 PSKTKKEFICKFCGR-----HFTKSYNLLIHERT-HTD--ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKG   82 (106)
T ss_dssp             CCCCCCCCBCSSSCC-----BCSSHHHHHHHHHH-HCC--SCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCC
T ss_pred             CcCCCcCeECCCCCC-----ccCCHHHHHHHHHH-cCC--CCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCc
Confidence            445667788888888     78888888888776 554  6788888888888888888888888888888888888888


Q ss_pred             CCChhHHHhhhhhhcCCCCCCCC
Q psy7353          92 FSRPDKMKNHMKTVHDCFMPATT  114 (139)
Q Consensus        92 f~~~~~l~~H~~~~h~~~~~~~C  114 (139)
                      |.....|..|+++ |.++++|.+
T Consensus        83 f~~~~~L~~H~~~-H~~~~~~~~  104 (106)
T 2ee8_A           83 FCQSRTLAVHKTL-HMQTSSPTA  104 (106)
T ss_dssp             CSSHHHHHHHHHH-TTSCCCCCC
T ss_pred             ccCHHHHHHHHHH-hCCCCCCcC
Confidence            8888888888887 677777754

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.83  E-value=6.5e-20  Score=107.52  Aligned_cols=85  Identities=25%  Similarity=0.524  Sum_probs=81.5

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhccc
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHK  131 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  131 (139)
                      .++|.|..|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++ |.++++|.|+.|++.|.....|..|+
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~L~~H~   93 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEKPFKCQECGKGFCQSRTLAVHK   93 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGG-SCCCCTTSCSSSCCCCSSHHHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHH-hCCCCCeECCCcCCcccCHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999998 88899999999999999999999999


Q ss_pred             ccccCc
Q psy7353         132 DSVFNK  137 (139)
Q Consensus       132 ~~~~~~  137 (139)
                      +.|+++
T Consensus        94 ~~H~~~   99 (106)
T 2ee8_A           94 TLHMQT   99 (106)
T ss_dssp             HHTTSC
T ss_pred             HHhCCC
Confidence            998864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=9.7e-20  Score=104.93  Aligned_cols=86  Identities=27%  Similarity=0.442  Sum_probs=82.3

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhccc
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHK  131 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  131 (139)
                      .++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.++++|.|+.|++.|.....|..|+
T Consensus         6 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~   84 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQICPYASRNSSQLTVHL   84 (96)
T ss_dssp             CCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHH-SCCCCCEECSSSSCEESSHHHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHH-hCCCCCccCCCCCCccCCHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999998 88899999999999999999999999


Q ss_pred             ccccCcC
Q psy7353         132 DSVFNKD  138 (139)
Q Consensus       132 ~~~~~~~  138 (139)
                      +.|+++.
T Consensus        85 ~~h~~~~   91 (96)
T 2dmd_A           85 RSHTGDS   91 (96)
T ss_dssp             TTCCSCC
T ss_pred             HHhcCCC
Confidence            9998653

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.82  E-value=3.3e-21  Score=107.98  Aligned_cols=79  Identities=32%  Similarity=0.738  Sum_probs=47.6

Q ss_pred             ceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhH
Q psy7353          18 IYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDK   97 (139)
Q Consensus        18 ~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~   97 (139)
                      ||.|+.|++     .|.....|..|++. |.+  .++|.|+.|++.|.....|..|+..|.++++|.|..|++.|.....
T Consensus         1 ~~~C~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   72 (82)
T 2kmk_A            1 SFDCKICGK-----SFKRSSTLSTHLLI-HSD--TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSN   72 (82)
T ss_dssp             CEECSSSCC-----EESSHHHHHHHHHH-HHT--CCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHH
T ss_pred             CccCCCCcc-----cccCchhHHHHHHH-cCC--CCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHH
Confidence            355666666     56666666666554 333  4556666666666666666666666666666666666666666666


Q ss_pred             HHhhhhh
Q psy7353          98 MKNHMKT  104 (139)
Q Consensus        98 l~~H~~~  104 (139)
                      |..|+++
T Consensus        73 l~~H~~~   79 (82)
T 2kmk_A           73 LITHSRK   79 (82)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6666655

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=117.29  Aligned_cols=104  Identities=32%  Similarity=0.589  Sum_probs=92.8

Q ss_pred             cccCceeeec-cCCCcc--------eecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC--CCCcCCChHHHH
Q psy7353           3 VRGLNLFRYA-SVTEGI--------YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV--CGKEFSRPDKMK   71 (139)
Q Consensus         3 ~~~l~~~~~~-~~~~~~--------~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~--C~~~~~~~~~l~   71 (139)
                      ...|..|+.. |.++.+        |.|+.|++     .|.+...|..|++. |.+  .++|.|+.  |++.|.....|.
T Consensus        38 ~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~~~C~~~f~~~~~L~  109 (155)
T 2rpc_A           38 MHELVTHVTMEHVGGPEQNNHVCYWEECPREGK-----SFKAKYKLVNHIRV-HTG--EKPFPCPFPGCGKIFARSENLK  109 (155)
T ss_dssp             HHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSC-----CCSSHHHHHHHTHH-HHC--CCSEECSCTTTCCEESCHHHHH
T ss_pred             HHHHHHHHHhhcCCCcccCCccccccCCCCccc-----ccCCHHHHHHHHHh-cCC--CCcccCCcCCCCCccCCHHHHH
Confidence            3457778765 666554        78999999     99999999999987 665  78999998  999999999999


Q ss_pred             HHHHHhcCCCcccCCC--CCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          72 NHMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        72 ~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      .|++.|+++++|.|..  |++.|.....|..|+++ |.+++||.|+
T Consensus       110 ~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~~c~  154 (155)
T 2rpc_A          110 IHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPSS  154 (155)
T ss_dssp             HHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTT-TTSCCCSCSC
T ss_pred             HHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHH-hcCCCCCCCC
Confidence            9999999999999997  99999999999999998 8899999986

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=1.3e-20  Score=112.15  Aligned_cols=99  Identities=16%  Similarity=0.249  Sum_probs=73.4

Q ss_pred             CcccCceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHh-ccCCCCc-eeecCCCCCcC--CChHHHHHHHHHh
Q psy7353           2 SVRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLY-HEGCQRK-VFPCPVCGKEF--SRPDKMKNHMKTG   77 (139)
Q Consensus         2 s~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~-~~~~~~~-~~~c~~C~~~~--~~~~~l~~h~~~~   77 (139)
                      |...|..|+++|.++++|.|+.|++     .|.+...|..|++.. +.+  .+ .+.|+.|++.|  .....|..|++.|
T Consensus         3 s~~~l~~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~~~h~~--~~~~~~C~~C~~~f~f~~~~~l~~H~~~H   75 (115)
T 2dmi_A            3 SGSSGKLYGSIFTGASKFRCKDCSA-----AYDTLVELTVHMNETGHYR--DDNHETDNNNPKRWSKPRKRSLLEMEGKE   75 (115)
T ss_dssp             CCCCCCCCCCCCCCCCSEEBSSSSC-----EESSHHHHHHHHHHTCCCB--CSCCCCCCCCCSCCSSCCCCCCCCCCCSC
T ss_pred             cchhhhhheeeeCCCCCEECCccCc-----hhcCHHHHHHHHHHhCccc--cCCCccCCCCCcccccccHHHHHHHhhcc
Confidence            5677888888899999999999998     899999999998751 222  33 33477777766  6667777777777


Q ss_pred             cCCCcccCCCCCccCCChhHHHhhhhhhcC
Q psy7353          78 CQRKVFPCPVCGKEFSRPDKMKNHMKTVHD  107 (139)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (139)
                      +++++|.|..|++.|.....|..|++++|.
T Consensus        76 ~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           76 DAQKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CCCSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             CCCcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            777777777777777777777777776443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=1e-21  Score=116.95  Aligned_cols=95  Identities=12%  Similarity=0.078  Sum_probs=85.1

Q ss_pred             HHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHH--hcCCCccc-CCCCCccC--CChhHHHhhhhhhcCCCCCC
Q psy7353          38 SFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT--GCQRKVFP-CPVCGKEF--SRPDKMKNHMKTVHDCFMPA  112 (139)
Q Consensus        38 ~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~--~~~~~~~~-C~~C~~~f--~~~~~l~~H~~~~h~~~~~~  112 (139)
                      .|..|++. |.+  +++|.|+.|++.|.....|..|++.  +.+++++. |..|++.|  .....|..|+++ |.+++||
T Consensus         6 ~l~~H~~~-H~~--~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~-H~~~~~~   81 (115)
T 2dmi_A            6 SGKLYGSI-FTG--ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK-EDAQKVL   81 (115)
T ss_dssp             CCCCCCCC-CCC--CCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCS-CCCCSSC
T ss_pred             hhhhheee-eCC--CCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhc-cCCCcce
Confidence            46677765 666  8899999999999999999999998  77677654 99999998  899999999998 8899999


Q ss_pred             CCCCCCCCCCCCcchhcccccccC
Q psy7353         113 TTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus       113 ~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      .|++|++.|.....|..|++.+|.
T Consensus        82 ~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           82 KCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             BCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             ECCCCCCccCCHHHHHHHHHHhCC
Confidence            999999999999999999998874

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.81  E-value=8e-21  Score=108.24  Aligned_cols=81  Identities=38%  Similarity=0.836  Sum_probs=47.9

Q ss_pred             CcceecC--CCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCC
Q psy7353          16 EGIYKCM--ECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFS   93 (139)
Q Consensus        16 ~~~~~C~--~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   93 (139)
                      +++|.|+  .|++     .|.....|..|++. |.+  .++|.|+.|++.|.....|..|+..|.++++|.|..|++.|.
T Consensus         2 ~k~~~C~~~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   73 (90)
T 1a1h_A            2 ERPYACPVESCDR-----RFSQSGSLTRHIRI-HTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA   73 (90)
T ss_dssp             -CCEECCSSSCCC-----EESSHHHHHHHHHH-HHC--CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCceECCCCCCCC-----ccCCHHHHHHHHHH-hCC--CCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence            3556665  3666     56666666666554 333  455666666666666666666666666666666666666666


Q ss_pred             ChhHHHhhhhh
Q psy7353          94 RPDKMKNHMKT  104 (139)
Q Consensus        94 ~~~~l~~H~~~  104 (139)
                      ....|..|+++
T Consensus        74 ~~~~l~~H~~~   84 (90)
T 1a1h_A           74 RSDERKRHTKI   84 (90)
T ss_dssp             SHHHHHHHHGG
T ss_pred             CHHHHHHHHHH
Confidence            66666666665

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=2.5e-20  Score=107.22  Aligned_cols=85  Identities=40%  Similarity=0.860  Sum_probs=45.1

Q ss_pred             CCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCC--CcccCCCCCccC
Q psy7353          15 TEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQR--KVFPCPVCGKEF   92 (139)
Q Consensus        15 ~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~--~~~~C~~C~~~f   92 (139)
                      ++++|.|+.|++     .|.....|..|++. |.+  .++|.|+.|++.|.....|..|++.|.++  ++|.|..|++.|
T Consensus         4 ~~~~~~C~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f   75 (95)
T 2yt9_A            4 GSSGVACEICGK-----IFRDVYHLNRHKLS-HSG--EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF   75 (95)
T ss_dssp             CCSCEECSSSCC-----EESSSHHHHHHHHH-SCS--SCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred             CCCCeECCCCCC-----ccCChHHHHHHHHh-cCC--CCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence            445555555555     55555555555544 333  44555555555555555555555555544  555555555555


Q ss_pred             CChhHHHhhhhhhcC
Q psy7353          93 SRPDKMKNHMKTVHD  107 (139)
Q Consensus        93 ~~~~~l~~H~~~~h~  107 (139)
                      .....|..|++..|.
T Consensus        76 ~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           76 SRPDHLNGHIKQVHS   90 (95)
T ss_dssp             SSHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHhcC
Confidence            555555555543244

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.81  E-value=3.5e-20  Score=111.51  Aligned_cols=100  Identities=27%  Similarity=0.582  Sum_probs=86.6

Q ss_pred             cccCceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC--CCCcCCChHHHHHHHHHhcCC
Q psy7353           3 VRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV--CGKEFSRPDKMKNHMKTGCQR   80 (139)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~   80 (139)
                      ...|..|+..| ++++|.|+.|++     .|.+...|..|++. |.+  .++|.|+.  |++.|.....|..|++.|.++
T Consensus        20 ~~~l~~H~~~h-~~~~~~C~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   90 (124)
T 1ubd_C           20 NSAMRKHLHTH-GPRVHVCAECGK-----AFVESSKLKRHQLV-HTG--EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   90 (124)
T ss_dssp             HHHHHHHHGGG-SCCCEECTTTCC-----EESSHHHHHHHGGG-TSC--CCCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHc-CCCCeECCCCCc-----hhCCHHHHHHHHHH-cCC--CCCeeCCCCCCcCccCCHHHHHHHHHHhCCC
Confidence            45677888888 789999999999     99999999999876 666  78999986  999999999999999999999


Q ss_pred             CcccCC--CCCccCCChhHHHhhhhhhcCCCCCC
Q psy7353          81 KVFPCP--VCGKEFSRPDKMKNHMKTVHDCFMPA  112 (139)
Q Consensus        81 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (139)
                      ++|.|+  .|++.|.....|..|+++ |.+++++
T Consensus        91 ~~~~C~~~~C~~~f~~~~~L~~H~~~-H~~~k~~  123 (124)
T 1ubd_C           91 RPYVCPFDGCNKKFAQSTNLKSHILT-HAKAKNN  123 (124)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH-HC-----
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHH-HcccccC
Confidence            999995  599999999999999998 7777765

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=2.1e-20  Score=110.34  Aligned_cols=87  Identities=31%  Similarity=0.680  Sum_probs=66.2

Q ss_pred             ccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCcc
Q psy7353          12 ASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKE   91 (139)
Q Consensus        12 ~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~   91 (139)
                      .|.++++|.| .|++     .|.+...|..|++. |.+  .++|.|++|++.|.....|..|++.|.++++|.|..|++.
T Consensus         4 ~h~~~k~~~C-~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (110)
T 2csh_A            4 GSSGDKLYPC-QCGK-----SFTHKSQRDRHMSM-HLG--LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR   74 (110)
T ss_dssp             CCCCCCCEEC-TTSC-----EESSHHHHHHHHHH-HSC--CCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCE
T ss_pred             CCCCCCCEec-cCCC-----ccCCHHHHHHHHHH-cCC--CcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcch
Confidence            4667778888 7887     78888888888765 444  5677888888888888888888877777778888888888


Q ss_pred             CCChhHHHhhhhhhcC
Q psy7353          92 FSRPDKMKNHMKTVHD  107 (139)
Q Consensus        92 f~~~~~l~~H~~~~h~  107 (139)
                      |.....|..|+++++.
T Consensus        75 f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           75 FMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             ESCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHccc
Confidence            8888888888777543

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=4.6e-19  Score=101.88  Aligned_cols=83  Identities=28%  Similarity=0.541  Sum_probs=77.7

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCC--CCCCCCCCCCCCCCCcchhc
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCF--MPATTPQGQRGQRASPVIDF  129 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~--~~~~C~~C~~~f~~~~~l~~  129 (139)
                      +++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.++  ++|.|+.|++.|.+...|..
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~~C~~C~~~f~~~~~L~~   83 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNG   83 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHH-HCCCCCSSBCCSSSCCCBSSHHHHHH
T ss_pred             CCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHH-hcCCCCCceECCCccchhCCHHHHHH
Confidence            68899999999999999999999999999999999999999999999999998 5554  89999999999999999999


Q ss_pred             cccccc
Q psy7353         130 HKDSVF  135 (139)
Q Consensus       130 H~~~~~  135 (139)
                      |++..|
T Consensus        84 H~~~~H   89 (95)
T 2yt9_A           84 HIKQVH   89 (95)
T ss_dssp             HHHHTS
T ss_pred             HHHHhc
Confidence            987555

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.80  E-value=2.2e-19  Score=102.21  Aligned_cols=85  Identities=25%  Similarity=0.522  Sum_probs=79.5

Q ss_pred             CceeecC--CCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhc
Q psy7353          52 RKVFPCP--VCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDF  129 (139)
Q Consensus        52 ~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~  129 (139)
                      +++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.++++|.|+.|++.|.+...|..
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH-HHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHH-cCCCCCccCCCCCchhCCHHHHHH
Confidence            5789998  5999999999999999999999999999999999999999999998 778899999999999999999999


Q ss_pred             ccccccCc
Q psy7353         130 HKDSVFNK  137 (139)
Q Consensus       130 H~~~~~~~  137 (139)
                      |++.|+++
T Consensus        81 H~~~H~~~   88 (90)
T 1a1h_A           81 HTKIHLRQ   88 (90)
T ss_dssp             HHGGGGC-
T ss_pred             HHHHhccc
Confidence            99998853

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.78  E-value=9.8e-20  Score=108.71  Aligned_cols=94  Identities=33%  Similarity=0.699  Sum_probs=87.2

Q ss_pred             cccCceeeeccCCCcceecC--CCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCC
Q psy7353           3 VRGLNLFRYASVTEGIYKCM--ECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQR   80 (139)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~C~--~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~   80 (139)
                      ...|..|+..|.++++|.|+  .|++     .|.+...|..|++. |.+  .++|.|+.|++.|.....|..|++.|+++
T Consensus        21 ~~~l~~H~~~h~~~~~~~C~~~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (119)
T 2jp9_A           21 LSHLQMHSRKHTGEKPYQCDFKDCER-----RFSRSDQLKRHQRR-HTG--VKPFQCKTCQRKFSRSDHLKTHTRTHTGE   92 (119)
T ss_dssp             HHHHHHHHHHHHTTCCEECCSTTCCC-----EESSHHHHHHHHHH-HHC--CCCEECTTTCCEESCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhCCCCCccCCCCCCcC-----ccCCHHHHHHHHHH-cCC--CCCccCCccCchhCCHHHHHHHHHHhcCC
Confidence            45678888889999999999  7999     99999999999987 555  78999999999999999999999999999


Q ss_pred             CcccC--CCCCccCCChhHHHhhhhh
Q psy7353          81 KVFPC--PVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C--~~C~~~f~~~~~l~~H~~~  104 (139)
                      ++|.|  +.|++.|.....|..|+++
T Consensus        93 ~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           93 KPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             CCeeCCCCCCccccCCHHHHHHHHhc
Confidence            99999  8999999999999999987

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.78  E-value=5.4e-19  Score=98.85  Aligned_cols=82  Identities=26%  Similarity=0.515  Sum_probs=77.8

Q ss_pred             eeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhccccc
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDS  133 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  133 (139)
                      ||.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.++++|.|+.|++.|.+...|..|++.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHH-HHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHH-hcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            589999999999999999999999999999999999999999999999998 7788999999999999999999999998


Q ss_pred             ccC
Q psy7353         134 VFN  136 (139)
Q Consensus       134 ~~~  136 (139)
                      |++
T Consensus        80 H~g   82 (82)
T 2kmk_A           80 HTG   82 (82)
T ss_dssp             HC-
T ss_pred             hCC
Confidence            764

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.78  E-value=7.5e-19  Score=103.65  Aligned_cols=86  Identities=27%  Similarity=0.496  Sum_probs=81.6

Q ss_pred             ccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcc
Q psy7353          47 HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPV  126 (139)
Q Consensus        47 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~  126 (139)
                      |.+  +++|.| .|++.|.....|..|+..|.++++|.|..|++.|.....|..|+++ |.++++|.|+.|++.|.....
T Consensus         5 h~~--~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~   80 (110)
T 2csh_A            5 SSG--DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIKPYECNICAKRFMWRDS   80 (110)
T ss_dssp             CCC--CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT-TCCCCCEECSSSCCEESCHHH
T ss_pred             CCC--CCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHH-cCCCCCeeCCCCcchhcCHHH
Confidence            556  789999 9999999999999999999999999999999999999999999998 788999999999999999999


Q ss_pred             hhcccccccC
Q psy7353         127 IDFHKDSVFN  136 (139)
Q Consensus       127 l~~H~~~~~~  136 (139)
                      |..|++.++.
T Consensus        81 l~~H~~~~~~   90 (110)
T 2csh_A           81 FHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHccc
Confidence            9999998874

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.77  E-value=4.8e-19  Score=102.66  Aligned_cols=82  Identities=22%  Similarity=0.457  Sum_probs=42.6

Q ss_pred             ceeecCC--CCCcCCChHHHHHHHHHhcCCCcccCC--CCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchh
Q psy7353          53 KVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPCP--VCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVID  128 (139)
Q Consensus        53 ~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~  128 (139)
                      ++|.|..  |++.|.....|..|++.|.++++|.|.  .|++.|.....|..|+++ |.++++|.|+.|++.|.....|.
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~   92 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLA   92 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHH-HTSCCSCBCSSSCCBCSSHHHHH
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHH-hCCCCCeECCCCcCccCCHHHHH
Confidence            3445553  555555555555555555555555553  355555555555555554 44455555555555555555555


Q ss_pred             ccccccc
Q psy7353         129 FHKDSVF  135 (139)
Q Consensus       129 ~H~~~~~  135 (139)
                      .|++.|.
T Consensus        93 ~H~~~H~   99 (100)
T 2ebt_A           93 LHMKRHQ   99 (100)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            5555443

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.76  E-value=1.1e-18  Score=92.07  Aligned_cols=57  Identities=26%  Similarity=0.608  Sum_probs=44.2

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCF  109 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (139)
                      ++||.|.+|++.|...+.|..|+++|++++||.|..||+.|...++|..|+++ |.|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~-Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV-HQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG-GSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc-cCCC
Confidence            57777877887777777788887777777788887788888888888888777 6654

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.76  E-value=3.6e-19  Score=101.11  Aligned_cols=80  Identities=31%  Similarity=0.678  Sum_probs=42.3

Q ss_pred             cceecCC--CCCcchhcccCCHHHHHHHHHHhccCCCCceeecC--CCCCcCCChHHHHHHHHHhcCCCcccCCCCCccC
Q psy7353          17 GIYKCME--CAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP--VCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEF   92 (139)
Q Consensus        17 ~~~~C~~--c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f   92 (139)
                      ++|.|+.  |++     .|.....|..|++. |.+  .++|.|+  .|++.|.....|..|+..|.++++|.|..|++.|
T Consensus         4 ~~~~C~~~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   75 (89)
T 2wbs_A            4 ATHTCDYAGCGK-----TYTKSSHLKAHLRT-HTG--EKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAF   75 (89)
T ss_dssp             CCEECCSTTTCC-----EESSHHHHHHHHTT-SCS--SCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEE
T ss_pred             CCeeCCCCCCCC-----cCCCHHHHHHHHHh-cCC--CCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCccc
Confidence            3455555  555     55555555555543 333  4455554  3555555555555555555555555555555555


Q ss_pred             CChhHHHhhhhh
Q psy7353          93 SRPDKMKNHMKT  104 (139)
Q Consensus        93 ~~~~~l~~H~~~  104 (139)
                      .....|..|+++
T Consensus        76 ~~~~~l~~H~~~   87 (89)
T 2wbs_A           76 SRSDHLALHMKR   87 (89)
T ss_dssp             SSHHHHHHHGGG
T ss_pred             CCHHHHHHHHHh
Confidence            555555555554

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.75  E-value=1.5e-19  Score=95.37  Aligned_cols=57  Identities=23%  Similarity=0.459  Sum_probs=54.8

Q ss_pred             CCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353          80 RKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      |+||.|..|++.|...+.|..|+++ |.+++||.|++|++.|.....|..|++.|.++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~-Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH-HHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHH-hCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            7999999999999999999999998 89999999999999999999999999998765

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=3.6e-19  Score=104.58  Aligned_cols=84  Identities=24%  Similarity=0.371  Sum_probs=77.2

Q ss_pred             ccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcc
Q psy7353          47 HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPV  126 (139)
Q Consensus        47 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~  126 (139)
                      |.+  +++|.|+.|++.|.....|..|++.|  .++|.|..|++.|.....|..|+ . |.+++||.|+.|++.|.....
T Consensus        11 h~~--~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~-~-H~~~~~~~C~~C~~~f~~~~~   84 (107)
T 1wjp_A           11 VEN--KEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE-S-KCEYKKLTCLECMRTFKSSFS   84 (107)
T ss_dssp             CCC--CCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHH-H-HCSTGGGEEGGGTEECSSHHH
T ss_pred             cCC--CcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHH-H-cCCCCCccCccccchhCCHHH
Confidence            555  78999999999999999999999998  47999999999999999999999 4 889999999999999999999


Q ss_pred             hhcccccccC
Q psy7353         127 IDFHKDSVFN  136 (139)
Q Consensus       127 l~~H~~~~~~  136 (139)
                      |..|++..|.
T Consensus        85 L~~H~~~~H~   94 (107)
T 1wjp_A           85 IWRHQVEVHN   94 (107)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHHHcC
Confidence            9999985553

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.73  E-value=2e-20  Score=106.35  Aligned_cols=81  Identities=27%  Similarity=0.553  Sum_probs=48.2

Q ss_pred             ceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccc
Q psy7353          53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKD  132 (139)
Q Consensus        53 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  132 (139)
                      ++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++++|.  .+|.|+.|++.|.....|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~--~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI--LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHhhhHHHHH
Confidence            4556666666666666666666666666666666666666666666666655432  45566666666666666666655


Q ss_pred             ccc
Q psy7353         133 SVF  135 (139)
Q Consensus       133 ~~~  135 (139)
                      .+|
T Consensus        80 ~~h   82 (88)
T 1llm_C           80 RLK   82 (88)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.70  E-value=6e-17  Score=91.80  Aligned_cols=83  Identities=25%  Similarity=0.566  Sum_probs=78.1

Q ss_pred             CceeecCC--CCCcCCChHHHHHHHHHhcCCCcccCC--CCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcch
Q psy7353          52 RKVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPCP--VCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVI  127 (139)
Q Consensus        52 ~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l  127 (139)
                      ..+|.|+.  |++.|.....|..|+..|.++++|.|+  .|++.|.....|..|+++ |.++++|.|+.|++.|.....|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l   81 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHL   81 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHH-HHCCCCEECSSSSCEESSHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHH-cCCCCCccCCCCCcccCCHHHH
Confidence            46799999  999999999999999999999999997  699999999999999998 7889999999999999999999


Q ss_pred             hccccccc
Q psy7353         128 DFHKDSVF  135 (139)
Q Consensus       128 ~~H~~~~~  135 (139)
                      ..|++.|.
T Consensus        82 ~~H~~~H~   89 (89)
T 2wbs_A           82 ALHMKRHF   89 (89)
T ss_dssp             HHHGGGGC
T ss_pred             HHHHHhhC
Confidence            99998873

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.70  E-value=1.3e-16  Score=92.33  Aligned_cols=84  Identities=31%  Similarity=0.616  Sum_probs=76.9

Q ss_pred             CCCcceecCC--CCCcchhcccCCHHHHHHHHHHhccCCCCceeecC--CCCCcCCChHHHHHHHHHhcCCCcccCCCCC
Q psy7353          14 VTEGIYKCME--CAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP--VCGKEFSRPDKMKNHMKTGCQRKVFPCPVCG   89 (139)
Q Consensus        14 ~~~~~~~C~~--c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~   89 (139)
                      ...++|.|..  |++     .|.....|..|++. |.+  .++|.|+  .|++.|.....|..|++.|+++++|.|..|+
T Consensus        11 ~~~~~~~C~~~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   82 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTK-----VYTKSSHLKAHLRT-HTG--EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN   82 (100)
T ss_dssp             CSCCCEECCSSSCCC-----EESCHHHHHHHHHH-HSC--CCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSC
T ss_pred             ccCcceEcCCCCCCC-----cccCHHHHHHHHHH-hCC--CCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCc
Confidence            3457899996  999     99999999999987 665  7899997  5999999999999999999999999999999


Q ss_pred             ccCCChhHHHhhhhhh
Q psy7353          90 KEFSRPDKMKNHMKTV  105 (139)
Q Consensus        90 ~~f~~~~~l~~H~~~~  105 (139)
                      +.|.....|..|+++|
T Consensus        83 ~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           83 RSFSRSDHLALHMKRH   98 (100)
T ss_dssp             CBCSSHHHHHHHHHHH
T ss_pred             CccCCHHHHHHHHHHh
Confidence            9999999999999984

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.70  E-value=4.3e-18  Score=95.71  Aligned_cols=73  Identities=26%  Similarity=0.437  Sum_probs=36.1

Q ss_pred             CCCCCcCCChHHHHHHHHHhcCCCcccCCC--CCccCCChhHHHhhhhhhcCCCCCCCCCC---CCCCCCCCcchhcccc
Q psy7353          58 PVCGKEFSRPDKMKNHMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKTVHDCFMPATTPQ---GQRGQRASPVIDFHKD  132 (139)
Q Consensus        58 ~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~---C~~~f~~~~~l~~H~~  132 (139)
                      +.|++.|.....|..|++.|.++++|.|..  |++.|.....|..|+++ |.+   |.|+.   |++.|.+...|..|++
T Consensus         7 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~---~~C~~~~~C~~~f~~~~~l~~H~~   82 (85)
T 2j7j_A            7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAG---YPCKKDDSCSFVGKTWTLYLKHVA   82 (85)
T ss_dssp             TTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHH-HHS---EECCSCSSCCCEESSHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHH-hCC---CCCCCCCCCCCccCCHHHHHHHHH
Confidence            445555555555555555554455555544  55555555555555544 222   44544   5555555555555544


Q ss_pred             cc
Q psy7353         133 SV  134 (139)
Q Consensus       133 ~~  134 (139)
                      .+
T Consensus        83 ~h   84 (85)
T 2j7j_A           83 EC   84 (85)
T ss_dssp             HC
T ss_pred             hc
Confidence            44

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=3.2e-17  Score=91.01  Aligned_cols=70  Identities=30%  Similarity=0.563  Sum_probs=51.6

Q ss_pred             CceeecCC--CCCcCCChHHHHHHHH-HhcCCCcccCCC--CCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCC
Q psy7353          52 RKVFPCPV--CGKEFSRPDKMKNHMK-TGCQRKVFPCPV--CGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQR  122 (139)
Q Consensus        52 ~~~~~c~~--C~~~~~~~~~l~~h~~-~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~  122 (139)
                      +++|.|..  |++.|.....|..|++ .|.++++|.|..  |++.|.....|..|+++ |.+++||.|+.|++.|.
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHH-HHTSCCCSCCSSSCCCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHH-hCCCCCeeCCCCCCCCC
Confidence            45667765  7777777777777777 577777777777  77777777777777776 66677777777777763

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.5e-16  Score=89.62  Aligned_cols=83  Identities=25%  Similarity=0.397  Sum_probs=57.1

Q ss_pred             cCceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCC-CCceeecCCCCCcCCChHHHHHHHHHhcCCCcc
Q psy7353           5 GLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGC-QRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVF   83 (139)
Q Consensus         5 ~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~-~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (139)
                      +|.+|+++|.++++|.|..|++     .|.....|..|++..+... ..++|.|..|++.|.....|..|++.|+++.++
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~-----~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~   76 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDK-----TFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGV   76 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSC-----EESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSC
T ss_pred             CcccccceecCCCCCcCCCCCC-----ccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCc
Confidence            3566777788888888888888     7888888888876544430 015677777777777777777777777776677


Q ss_pred             cCCCCCccC
Q psy7353          84 PCPVCGKEF   92 (139)
Q Consensus        84 ~C~~C~~~f   92 (139)
                      .|..|+.++
T Consensus        77 ~~~~~~~~~   85 (86)
T 1x6h_A           77 EGENSGPSS   85 (86)
T ss_dssp             CCCCCCCCC
T ss_pred             ccCCCCCCC
Confidence            776666543

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.67  E-value=1.7e-18  Score=104.83  Aligned_cols=118  Identities=12%  Similarity=0.068  Sum_probs=85.8

Q ss_pred             eeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCC------ChHHHHHHHHHhcCCCcc
Q psy7353          10 RYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFS------RPDKMKNHMKTGCQRKVF   83 (139)
Q Consensus        10 ~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~------~~~~l~~h~~~~~~~~~~   83 (139)
                      +.++.+.++|.|...+..   ..|.....+..+..  ...  .+.+.|++|.+.|.      ....|..|+ .|++++||
T Consensus         4 ~~~~~~~k~~~~~~k~~~---~~~s~ee~~~~~~l--~~~--~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~   75 (129)
T 2wbt_A            4 SDVDSGSKKYLSNHKGIF---IHVTLEELKRYHQL--TPE--QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQF   75 (129)
T ss_dssp             -CCCTTCCGGGGCSSCEE---EECCHHHHHHHTTS--CHH--HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSE
T ss_pred             chhcccccccccccCCee---eeecHHhhhccccC--Chh--hCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCe
Confidence            346778899988765531   12222222222221  111  45667777765444      555565555 68889999


Q ss_pred             cCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccCcC
Q psy7353          84 PCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNKD  138 (139)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  138 (139)
                      .|..|++.|.....|..|+++ |  ++||.|+.|++.|.....|..|++.||+.-
T Consensus        76 ~C~~C~k~f~~~~~l~~H~~~-H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A           76 VCPLCLMPFSSSVSLKQHIRY-T--EHTKVCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             ECTTTCCEESSHHHHHHHHHH-T--CCCCBCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             ECCCCCcccCCHhHHHHHHHH-C--CCCCCCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            999999999999999999998 5  789999999999999999999999999753

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=5.4e-16  Score=86.01  Aligned_cols=73  Identities=29%  Similarity=0.550  Sum_probs=66.8

Q ss_pred             cCCCcceecCC--CCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC--CCCcCCChHHHHHHHHHhcCCCcccCCCC
Q psy7353          13 SVTEGIYKCME--CAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPCPVC   88 (139)
Q Consensus        13 ~~~~~~~~C~~--c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (139)
                      ++++++|.|..  |++     .|.+...|..|++..|.+  .++|.|+.  |++.|.....|..|++.|+++++|.|..|
T Consensus         2 s~~~~~~~C~~~~C~~-----~f~~~~~L~~H~~~~H~~--~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   74 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGR-----IFSNRQYLNHHKKYQHIH--QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS   74 (79)
T ss_dssp             CSCCSSEECSSTTTCC-----EESSHHHHHHHHHHGGGS--CCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSS
T ss_pred             CCCCCCccCCCCCCcC-----ccCCHHHHHHHHHHHhCC--CCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCC
Confidence            35678899986  999     999999999999845777  88999999  99999999999999999999999999999


Q ss_pred             CccC
Q psy7353          89 GKEF   92 (139)
Q Consensus        89 ~~~f   92 (139)
                      ++.|
T Consensus        75 ~k~F   78 (79)
T 2dlk_A           75 GPSS   78 (79)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9987

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.8e-16  Score=89.29  Aligned_cols=79  Identities=23%  Similarity=0.409  Sum_probs=70.0

Q ss_pred             HHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCC----CcccCCCCCccCCChhHHHhhhhhhcCCCCCCCC
Q psy7353          39 FQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQR----KVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATT  114 (139)
Q Consensus        39 l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~----~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C  114 (139)
                      +..|++. |.+  +++|.|..|++.|.....|..|+..+..+    ++|.|..|++.|.....|..|+++ |.+++++.|
T Consensus         3 ~~~H~~~-H~~--~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~~~~~   78 (86)
T 1x6h_A            3 SGSSGRT-HTG--EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-CAGPDGVEG   78 (86)
T ss_dssp             TTCCSTT-CCC--CCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHH-CCCCCSCCC
T ss_pred             cccccce-ecC--CCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHH-ccCCCCccc
Confidence            4456655 666  88999999999999999999999887765    789999999999999999999998 788899999


Q ss_pred             CCCCCCC
Q psy7353         115 PQGQRGQ  121 (139)
Q Consensus       115 ~~C~~~f  121 (139)
                      ..|+..|
T Consensus        79 ~~~~~~~   85 (86)
T 1x6h_A           79 ENSGPSS   85 (86)
T ss_dssp             CCCCCCC
T ss_pred             CCCCCCC
Confidence            9998865

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=3.8e-16  Score=86.33  Aligned_cols=62  Identities=29%  Similarity=0.648  Sum_probs=47.4

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATT  114 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C  114 (139)
                      +++|.|++|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~p~~C   77 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HTGSGPSSG   77 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGG-SCCCCCCCC
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHH-hCCCCCCCC
Confidence            56777777777777777777777777777777777777777777778888776 677777766

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.64  E-value=5e-16  Score=87.12  Aligned_cols=78  Identities=31%  Similarity=0.658  Sum_probs=72.0

Q ss_pred             ceec--CCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC--CCCcCCChHHHHHHHHHhcCCCcccCCC---CCc
Q psy7353          18 IYKC--MECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPCPV---CGK   90 (139)
Q Consensus        18 ~~~C--~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~---C~~   90 (139)
                      ||.|  +.|++     .|.....|..|++. |.+  +++|.|+.  |++.|.....|..|++.|++   |.|..   |++
T Consensus         1 p~~C~~~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~   69 (85)
T 2j7j_A            1 MYVCHFENCGK-----AFKKHNQLKVHQFS-HTQ--QLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSF   69 (85)
T ss_dssp             CEECCSTTCCC-----EESSHHHHHHHHHH-HHT--TCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCC
T ss_pred             CccCCCCCCCc-----ccCCHHHHHHHHHH-hCC--CCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCC
Confidence            5889  89999     99999999999977 666  78999998  99999999999999999988   99999   999


Q ss_pred             cCCChhHHHhhhhhhc
Q psy7353          91 EFSRPDKMKNHMKTVH  106 (139)
Q Consensus        91 ~f~~~~~l~~H~~~~h  106 (139)
                      .|.....|..|++++|
T Consensus        70 ~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           70 VGKTWTLYLKHVAECH   85 (85)
T ss_dssp             EESSHHHHHHHHHHCC
T ss_pred             ccCCHHHHHHHHHhcC
Confidence            9999999999999853

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.64  E-value=1.8e-17  Score=94.04  Aligned_cols=83  Identities=22%  Similarity=0.444  Sum_probs=76.1

Q ss_pred             CcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCCh
Q psy7353          16 EGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRP   95 (139)
Q Consensus        16 ~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~   95 (139)
                      ++||.|+.|++     .|.....|..|++. |.+  +++|.|+.|++.|.....|..|+..+++ .+|.|..|++.|...
T Consensus         1 ek~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~   71 (88)
T 1llm_C            1 MKPFQCRICMR-----NFSRSDHLTTHIRT-HTG--EKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKN   71 (88)
T ss_dssp             CCCEECTTTCC-----EESCHHHHHHHHHH-HHC--CCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCC-----ccCCHHHHHHHHHH-cCC--CCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHH
Confidence            47899999999     99999999999987 666  7899999999999999999999999885 889999999999999


Q ss_pred             hHHHhhhhhhcC
Q psy7353          96 DKMKNHMKTVHD  107 (139)
Q Consensus        96 ~~l~~H~~~~h~  107 (139)
                      ..|..|++..|.
T Consensus        72 ~~L~~H~~~~h~   83 (88)
T 1llm_C           72 YHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHH
Confidence            999999987553

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=2.5e-16  Score=91.55  Aligned_cols=66  Identities=15%  Similarity=0.221  Sum_probs=48.1

Q ss_pred             CceeecCCCCCcCCChHHHHHHHH-Hh---cCCCcccCCCCCccCCChhHHHhh-hhhhcCCCCCCCCCCCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMK-TG---CQRKVFPCPVCGKEFSRPDKMKNH-MKTVHDCFMPATTPQGQ  118 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~-~~---~~~~~~~C~~C~~~f~~~~~l~~H-~~~~h~~~~~~~C~~C~  118 (139)
                      +++|.|+.|++.|.....|..|++ .|   .+++||.|..|++.|.....|..| +++ |.+++||.|..+.
T Consensus        16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~-Htgekpy~C~~~~   86 (102)
T 2ghf_A           16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY-HPGEENFKLTMVK   86 (102)
T ss_dssp             CSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHT-STTCCCEEEEECC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHh-cCCCCCeeCCccc
Confidence            567777777777777777777776 36   456777777777777777778777 565 7777777777644

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=3.5e-17  Score=90.55  Aligned_cols=60  Identities=25%  Similarity=0.585  Sum_probs=36.9

Q ss_pred             CceeecCCCCCcCCChHHHHHHHH-HhcCC-CcccCCCCCccCCChhHHHhhhhhhcCCCCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMK-TGCQR-KVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP  111 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~-~~~~~-~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  111 (139)
                      +++|.|++|++.|.....|..|+. .|.++ ++|.|..|++.|.....|..|++++|..+.|
T Consensus        13 ~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A           13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            566666666666666666666665 34443 5666666666666666666666665555544

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=5.3e-17  Score=87.18  Aligned_cols=61  Identities=15%  Similarity=0.229  Sum_probs=36.3

Q ss_pred             HhcCCCcccCCCCCccCCChhHHHhhhhhhc-CCCCCCCCCCCCCCCCCCcchhcccccccC
Q psy7353          76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVH-DCFMPATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      .|+++++|.|..|++.|.....|..|++++| .+++||.|+.|++.|.....|..|++.+|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            3455566666666666666666666665534 455666666666666666666666665553

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.60  E-value=2e-15  Score=82.74  Aligned_cols=60  Identities=27%  Similarity=0.631  Sum_probs=45.5

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPA  112 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (139)
                      .++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++||
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   74 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEKPY   74 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHH-HCCSCCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHh-cCCCCCC
Confidence            56777777777777777777777777777777777777777777777777776 6666665

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=3.2e-15  Score=82.58  Aligned_cols=72  Identities=24%  Similarity=0.461  Sum_probs=64.4

Q ss_pred             CceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccC
Q psy7353           6 LNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPC   85 (139)
Q Consensus         6 l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C   85 (139)
                      .......+.++++|.|+.|++     .|.....|..|++. |.+  .++|.|++|++.|.....|..|++.|++++||.|
T Consensus         6 ~~~~~~~~~~~~~~~C~~C~~-----~f~~~~~l~~H~~~-h~~--~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A            6 SGRSEWQQRERRRYKCDECGK-----SFSHSSDLSKHRRT-HTG--EKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCCSCCCCSCSSBCSSSCC-----BCSCHHHHHHHHTT-TCC--SCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCcCcCCCCCCEECCCCCc-----ccCCHHHHHHHHHH-cCC--CcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            344555677889999999999     99999999999976 666  7899999999999999999999999999999987

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=6e-16  Score=89.20  Aligned_cols=74  Identities=22%  Similarity=0.435  Sum_probs=57.8

Q ss_pred             ccCCHHHHHHHHHHhccCCCCceeecCCCCCcC-CChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhh-hhhhcCCC
Q psy7353          32 TFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEF-SRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNH-MKTVHDCF  109 (139)
Q Consensus        32 ~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~-~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~~h~~~  109 (139)
                      .|.....+..|.+. +.+  .++|.|+.|++.| .....|..|++.| ++++|.|..|++.|.....|..| +++ |.++
T Consensus        15 ~~~~~~~~~~~~~~-~~~--~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~-H~~~   89 (96)
T 2ctd_A           15 VYAAGSLEEQWYLE-IVD--KGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMAN-HNSL   89 (96)
T ss_dssp             SSCTTCHHHHHHHH-HHH--TSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHH-TCCC
T ss_pred             CCCCchHHHHHHHH-hcC--CCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHh-cCCC
Confidence            56666777777766 333  6788888888888 8888888888888 88888888888888888888888 666 6654


Q ss_pred             C
Q psy7353         110 M  110 (139)
Q Consensus       110 ~  110 (139)
                      .
T Consensus        90 p   90 (96)
T 2ctd_A           90 P   90 (96)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=6.9e-17  Score=93.45  Aligned_cols=79  Identities=16%  Similarity=0.260  Sum_probs=64.6

Q ss_pred             ccCCHHHHHHHHHHhccCCCCceeecCCCCCcCC-ChHHHHHHHHHhcC-CCcccCCCCCccCCChhHHHhhhhhhcCCC
Q psy7353          32 TFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFS-RPDKMKNHMKTGCQ-RKVFPCPVCGKEFSRPDKMKNHMKTVHDCF  109 (139)
Q Consensus        32 ~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~-~~~~l~~h~~~~~~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (139)
                      .+.....+..|++. |.+  .++|.|.+|++.|. ....|..|++.|++ +++|.|..|++.|.....|..|+++ |.++
T Consensus         5 s~~~~~~~~~h~~~-h~~--~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~-h~~~   80 (98)
T 2gqj_A            5 SSGPGGPEEQWQRA-IHE--RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA-EHSA   80 (98)
T ss_dssp             CCCCCCSCSHHHHT-TTT--TSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHH-HSCS
T ss_pred             CCCCCCcHHHHHHH-hcc--CCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHH-HcCC
Confidence            34455556777765 666  78899999999999 99999999999888 8899999999999999999999988 5566


Q ss_pred             CCCCC
Q psy7353         110 MPATT  114 (139)
Q Consensus       110 ~~~~C  114 (139)
                      +|...
T Consensus        81 kp~~~   85 (98)
T 2gqj_A           81 KPSDA   85 (98)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            76543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.58  E-value=4.3e-16  Score=87.67  Aligned_cols=59  Identities=25%  Similarity=0.596  Sum_probs=42.9

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFM  110 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (139)
                      .++|.|++|++.|.....|..|++.|++++||.|..|++.|.....|.+|++..|++|+
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            45677777777777777777777777777777777777777777777777655566553

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=3.5e-16  Score=85.41  Aligned_cols=53  Identities=34%  Similarity=0.688  Sum_probs=33.8

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHh
Confidence            55666666666666666666666666666666666666666666666666665

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.58  E-value=3.6e-15  Score=83.88  Aligned_cols=59  Identities=17%  Similarity=0.293  Sum_probs=47.5

Q ss_pred             HhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhccccccc
Q psy7353          76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      .+...++|.|++|++.|.....|.+|+++ |.+++||.|++|++.|.....|..|++..|
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~-H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRL-LHAAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHT-TSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhh-ccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            44566778888888888888888888887 677888888888888888888888876555

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.58  E-value=2.4e-16  Score=82.11  Aligned_cols=53  Identities=21%  Similarity=0.466  Sum_probs=29.6

Q ss_pred             ceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhh
Q psy7353          53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTV  105 (139)
Q Consensus        53 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (139)
                      ++|.|+.|++.|.....|..|++.|+++++|.|..|++.|.....|..|++++
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   55 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH   55 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHh
Confidence            45555555555555555555555555555555555555555555555555553

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=3.8e-16  Score=84.77  Aligned_cols=59  Identities=22%  Similarity=0.475  Sum_probs=44.0

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMP  111 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  111 (139)
                      +++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++ |.+++|
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~p   65 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FHGDMS   65 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHH-HHSSSC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHH-HhCCCC
Confidence            66777777777777777777777777777777777777777777777777777 344444

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.2e-14  Score=83.65  Aligned_cols=73  Identities=12%  Similarity=0.137  Sum_probs=64.8

Q ss_pred             CcCCChHHHHHHHHHhcCCCcccCCCCCccC-CChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcc-cccccC
Q psy7353          62 KEFSRPDKMKNHMKTGCQRKVFPCPVCGKEF-SRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFH-KDSVFN  136 (139)
Q Consensus        62 ~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f-~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~  136 (139)
                      ..+.....+..|+..+.++++|.|..|++.| .....|..|+++ | +++||.|++|++.|.....|..| ++.|.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~-h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMEN-C-KQEMFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHH-H-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHH-H-CCCCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            3566777888899999999999999999999 999999999998 6 89999999999999999999999 766654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=2e-15  Score=87.28  Aligned_cols=73  Identities=15%  Similarity=0.257  Sum_probs=48.5

Q ss_pred             cCceeeeccCCCcceecCCCCCcchhcccC-CHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcc
Q psy7353           5 GLNLFRYASVTEGIYKCMECAKVDVIKTFK-NKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVF   83 (139)
Q Consensus         5 ~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~-~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (139)
                      .+..|++.|.++++|.|+.|++     .|. ....|..|++.++..  +++|.|.+|++.|.....|..|++.|+++++.
T Consensus        11 ~~~~h~~~h~~~~~~~C~~C~k-----~f~~~~~~L~~H~~~h~~~--~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A           11 PEEQWQRAIHERGEAVCPTCNV-----VTRKTLVGLKKHMEVCQKL--QDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             SCSHHHHTTTTTSCCCCTTTCC-----CCSSCSHHHHHHHHHHHHH--HHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             cHHHHHHHhccCCCcCCCCCCC-----ChhhhHHHHHHHHHHHcCC--CCCEECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            3445666667777777777777     677 777777776654432  35677777777777777777777777766664


Q ss_pred             c
Q psy7353          84 P   84 (139)
Q Consensus        84 ~   84 (139)
                      .
T Consensus        84 ~   84 (98)
T 2gqj_A           84 D   84 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=4.9e-15  Score=86.07  Aligned_cols=75  Identities=20%  Similarity=0.275  Sum_probs=64.4

Q ss_pred             eeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccC-CCCceeecCCCCCcCCChHHHHHH-HHHhcCCCcccCCC
Q psy7353          10 RYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEG-CQRKVFPCPVCGKEFSRPDKMKNH-MKTGCQRKVFPCPV   87 (139)
Q Consensus        10 ~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~-~~~~~~~c~~C~~~~~~~~~l~~h-~~~~~~~~~~~C~~   87 (139)
                      +..-.+++||.|+.|++     .|.....|..|++..|.+ ..+++|.|..|++.|.....|..| ++.|++++||.|..
T Consensus        10 ~~~~~gekpy~C~~Cgk-----~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~   84 (102)
T 2ghf_A           10 QQNKKVEGGYECKYCTF-----QTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM   84 (102)
T ss_dssp             TTCCCCCSSEECSSCSC-----EESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEE
T ss_pred             cccCCCCcCcCCCCCCC-----ccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCc
Confidence            34456789999999999     999999999998755732 117899999999999999999999 89999999999987


Q ss_pred             CC
Q psy7353          88 CG   89 (139)
Q Consensus        88 C~   89 (139)
                      +.
T Consensus        85 ~~   86 (102)
T 2ghf_A           85 VK   86 (102)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=2.1e-15  Score=79.31  Aligned_cols=49  Identities=33%  Similarity=0.848  Sum_probs=25.7

Q ss_pred             eeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhh
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHM  102 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~  102 (139)
                      +|.|+.|++.|.....|..|++.|+++++|.|..|++.|.....|..|+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            4455555555555555555555555555555555555555555555554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.53  E-value=2.7e-15  Score=78.05  Aligned_cols=50  Identities=26%  Similarity=0.703  Sum_probs=29.1

Q ss_pred             eecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          55 FPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        55 ~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |.|+.|++.|.....|..|++.|+++++|.|..|++.|.....|..|+++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   51 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS   51 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHH
Confidence            45555555555555555555555555555555555555555555555555

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=5.7e-14  Score=77.46  Aligned_cols=70  Identities=19%  Similarity=0.352  Sum_probs=61.4

Q ss_pred             cCceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCC
Q psy7353           5 GLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQR   80 (139)
Q Consensus         5 ~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~   80 (139)
                      .|.+|+++|.++++|.|+.|++     .|.....|..|++..|.+. .++|.|+.|++.|.....|..|++.+++.
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~~h~~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHA-----RFTQSGTMKMHILQKHTEN-VAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCC-----EESCHHHHHHHHHHHSSSS-CSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CCCccccccCCCCCeECCCcCc-----hhCCHHHHHHHHHHhcCCC-CCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            4678999999999999999999     9999999999987557641 37999999999999999999999976543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.8e-15  Score=83.71  Aligned_cols=67  Identities=25%  Similarity=0.606  Sum_probs=57.6

Q ss_pred             ccCCCCceeecCCCCCcCCChHHHHHHHHHhcC---CCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          47 HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQ---RKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        47 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~---~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |.+  +++|.|.+|++.|.....|..|++.|.+   +++|.|..|++.|.....|..|++.+|.++++....
T Consensus         2 h~~--~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A            2 SSG--SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             CCS--CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             CCC--CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence            445  7899999999999999999999999885   789999999999999999999997778887776543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=4.7e-14  Score=77.19  Aligned_cols=65  Identities=29%  Similarity=0.695  Sum_probs=58.9

Q ss_pred             eccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcc
Q psy7353          11 YASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVF   83 (139)
Q Consensus        11 ~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (139)
                      ..+.++++|.|+.|++     .|.....|..|++. |.+  .++|.|.+|++.|.....|..|++.|++++||
T Consensus        10 ~~~~~~~~~~C~~C~k-----~f~~~~~l~~H~~~-H~~--~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQA-----SFRYKGNLASHKTV-HTG--EKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSC-----CBSCHHHHHHHHHH-HCC--CCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCc-----eeCCHHHHHHHHHH-cCC--CCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            3567789999999999     99999999999977 666  78999999999999999999999999999875

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.7e-14  Score=78.17  Aligned_cols=64  Identities=22%  Similarity=0.378  Sum_probs=43.6

Q ss_pred             ccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcc
Q psy7353          12 ASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVF   83 (139)
Q Consensus        12 ~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (139)
                      ++.++++|.|+.|++     .|.....|..|++. |.+  .++|.|++|++.|.....|..|++.|+++++.
T Consensus         3 s~~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSY-----SCSSKAALRIHERI-HCT--DRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSC-----EESSHHHHHHHHGG-GCC--SCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCc-----ccCCHHHHHHHHHH-cCC--CCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            345666777777777     67777777777655 554  56677777777777777777777777666653

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.51  E-value=2.3e-14  Score=74.47  Aligned_cols=56  Identities=18%  Similarity=0.293  Sum_probs=42.2

Q ss_pred             CCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccC
Q psy7353          80 RKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      +++|.|..|++.|.....|..|+++ |.+++||.|+.|++.|.....|..|++.||.
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRT-HTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHH-HHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCChHHHHHHHHH-cCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            5678888888888888888888887 6777888888888888888888888877763

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3.8e-14  Score=78.32  Aligned_cols=67  Identities=28%  Similarity=0.460  Sum_probs=45.1

Q ss_pred             cCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHH-HhcCCCccc
Q psy7353          13 SVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMK-TGCQRKVFP   84 (139)
Q Consensus        13 ~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~-~~~~~~~~~   84 (139)
                      |.++++|.|..|++     .|.....|..|++.++....+++|.|..|++.|.....|..|++ .|.++++..
T Consensus         2 h~~~k~~~C~~C~k-----~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            2 SSGSSGLQCEICGF-----TCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCSCCCEECSSSCC-----EESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCcCeECCCCCC-----eeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            56777777877777     77777777777766432001467778778777777777777773 455555443

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.49  E-value=5.5e-14  Score=72.98  Aligned_cols=55  Identities=20%  Similarity=0.352  Sum_probs=42.9

Q ss_pred             cccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      ||.|..|++.|.....|..|+++ |.+++||.|+.|++.|.....|..|++.|+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-TSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHh-cCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            57788888888888888888877 67777888888888888888888887777653

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.2e-15  Score=83.13  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=32.6

Q ss_pred             CCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          80 RKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      +++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~-H~~~~~~~C~~C   73 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGN-ESGKKTSGPSSG   73 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSC-CCCCCCSSCCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHh-hcCCCCCCCCCC
Confidence            6788999999999999999999988 788899999887

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=7.5e-14  Score=73.24  Aligned_cols=57  Identities=21%  Similarity=0.446  Sum_probs=46.4

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccCcC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNKD  138 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  138 (139)
                      +||.|..|++.|.....|..|+++ |.+++||.|+.|++.|.....|..|++..|..+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT-TTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHH-hCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            478888888888888888888887 778888888888888888888888875555443

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=1.9e-13  Score=74.38  Aligned_cols=66  Identities=29%  Similarity=0.504  Sum_probs=59.5

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRK   81 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~   81 (139)
                      .+.++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|++.|.....|..|++.|+++.
T Consensus         4 ~~~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-h~~--~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            4 GSSGIHSGEKPYGCVECGK-----AFSRSSILVQHQRV-HTG--EKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCCTTTTCCCEECSSSCC-----EESSHHHHHHHHHG-GGC--SCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCcccCCCCCccCCCCCC-----ccCCHHHHHHHHHh-cCC--CCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            3456789999999999999     99999999999977 666  789999999999999999999999998764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.7e-13  Score=78.33  Aligned_cols=61  Identities=23%  Similarity=0.372  Sum_probs=49.1

Q ss_pred             eecCCCCCcCCChHHHHHHHHH-hcCCCc--------ccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          55 FPCPVCGKEFSRPDKMKNHMKT-GCQRKV--------FPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        55 ~~c~~C~~~~~~~~~l~~h~~~-~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      +.|+.|++.|.....|..|++. |.++++        |.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   95 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV-HTGEKSGPSSG   95 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHH-HHTCCCCSSCC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHh-cCCCCCCCCCC
Confidence            4577777777777777777776 766666        8899999999999999999988 78888998863

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=2.4e-13  Score=72.62  Aligned_cols=54  Identities=35%  Similarity=0.778  Sum_probs=29.0

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHH-h-cCCCcccCCCCCccCCChhHHHhhhhhh
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKT-G-CQRKVFPCPVCGKEFSRPDKMKNHMKTV  105 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~-~-~~~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (139)
                      +++|.|+.|++.|.....|..|+.. | .++++|.|..|++.|.....|..|++++
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~   63 (66)
T 2drp_A            8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII   63 (66)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHH
Confidence            4455555555555555555555554 3 3455555555555555555555555553

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.8e-13  Score=74.62  Aligned_cols=53  Identities=34%  Similarity=0.881  Sum_probs=34.9

Q ss_pred             CceeecC--CCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          52 RKVFPCP--VCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        52 ~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      .++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++
T Consensus        17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            5666665  3666666666666666666666666666666666666666666665

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=4.3e-14  Score=77.10  Aligned_cols=59  Identities=22%  Similarity=0.387  Sum_probs=53.9

Q ss_pred             HhcCCCcccCC--CCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhccccccc
Q psy7353          76 TGCQRKVFPCP--VCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus        76 ~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      .+.++++|.|+  .|++.|.....|..|+++ |.++++|.|+.|++.|.....|..|++.|.
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHH-HHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHh-hCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            46678999997  699999999999999998 788999999999999999999999998763

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.38  E-value=7.4e-13  Score=79.85  Aligned_cols=86  Identities=22%  Similarity=0.362  Sum_probs=69.2

Q ss_pred             CcceecCCCCCcc-hhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCC
Q psy7353          16 EGIYKCMECAKVD-VIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSR   94 (139)
Q Consensus        16 ~~~~~C~~c~~~~-~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~   94 (139)
                      ++.+.|+.|.+.. ....|.....|..|+.  |.+  +++|.|+.|++.|.....|..|++.|  +++|.|..|++.|..
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~--h~~--~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~  112 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLLA--SKA--ISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTS  112 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHHH--HHH--HCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSS
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHHH--hCC--CCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCC
Confidence            4556677666510 0124457778888873  555  78999999999999999999999998  899999999999999


Q ss_pred             hhHHHhhhhhhcC
Q psy7353          95 PDKMKNHMKTVHD  107 (139)
Q Consensus        95 ~~~l~~H~~~~h~  107 (139)
                      ...|..|++++++
T Consensus       113 ~~~l~~H~~~h~~  125 (129)
T 2wbt_A          113 TDSALDHVCKKHN  125 (129)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999999554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.9e-13  Score=67.21  Aligned_cols=44  Identities=25%  Similarity=0.522  Sum_probs=38.9

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGG-TSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhh-cCCCCCCCCCCC
Confidence            45678889999999999999999999999988 788899999887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.36  E-value=9.3e-13  Score=67.67  Aligned_cols=47  Identities=36%  Similarity=0.650  Sum_probs=37.9

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCC
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRA  123 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~  123 (139)
                      +.++++|.|..|++.|.....|..|++..|.+++||.|++|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            56678888888888888888888888733788888888888888865

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.35  E-value=3.6e-13  Score=66.87  Aligned_cols=44  Identities=23%  Similarity=0.423  Sum_probs=38.8

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-HVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGG-GSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHH-cCCCCCcCCCCC
Confidence            55678888999999999999999999999998 788999999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.5e-13  Score=67.46  Aligned_cols=44  Identities=32%  Similarity=0.575  Sum_probs=38.5

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGG-TSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            55678888999999999999999999999998 788899999877

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3.2e-13  Score=67.02  Aligned_cols=44  Identities=30%  Similarity=0.567  Sum_probs=38.2

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHH-CCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHh-cCCCCCCCCCCC
Confidence            55678888999999999999999999999988 788899999877

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3.5e-13  Score=66.92  Aligned_cols=44  Identities=23%  Similarity=0.429  Sum_probs=38.7

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGG-GGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            45678889999999999999999999999998 788899999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.35  E-value=3e-13  Score=67.17  Aligned_cols=44  Identities=27%  Similarity=0.560  Sum_probs=37.1

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHH-HSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            45667888889999999999999999999887 788888988876

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.8e-13  Score=67.26  Aligned_cols=44  Identities=30%  Similarity=0.594  Sum_probs=37.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGG-GSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHH-hcCCCCCCCCCC
Confidence            45677888889999999999999999999887 788888988877

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.5e-13  Score=66.86  Aligned_cols=44  Identities=30%  Similarity=0.585  Sum_probs=39.0

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTT-TTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            55678889999999999999999999999998 788899999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.9e-13  Score=66.73  Aligned_cols=44  Identities=30%  Similarity=0.498  Sum_probs=38.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTT-TTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            45678888999999999999999999999988 788899999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.3e-13  Score=66.59  Aligned_cols=44  Identities=32%  Similarity=0.568  Sum_probs=38.7

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTT-TCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHH-hCCCCCCCCCCC
Confidence            45678888999999999999999999999998 788899999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.34  E-value=3.4e-13  Score=66.93  Aligned_cols=44  Identities=25%  Similarity=0.494  Sum_probs=38.5

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGG-SSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            45678888999999999999999999999988 788899999877

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3e-13  Score=67.18  Aligned_cols=44  Identities=25%  Similarity=0.502  Sum_probs=38.1

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTT-TCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhh-cCCCCCCCCCCC
Confidence            45678888899999999999999999999988 788899999887

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.5e-13  Score=72.73  Aligned_cols=51  Identities=31%  Similarity=0.730  Sum_probs=34.7

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCC-CCCccCCChhHHHhhhhh
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCP-VCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~  104 (139)
                      .++|.|+.|++.|. ...|..|++. ++++||.|. .|++.|...+.|..|+++
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            55666777776666 6666666666 666666676 676666666666666665

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4e-13  Score=66.71  Aligned_cols=44  Identities=27%  Similarity=0.593  Sum_probs=37.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHH-TTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            45667888889999999999999999999887 788889988877

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.1e-13  Score=66.62  Aligned_cols=44  Identities=27%  Similarity=0.455  Sum_probs=38.5

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTT-TTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            45678888999999999999999999999988 788899999877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.4e-13  Score=66.96  Aligned_cols=44  Identities=25%  Similarity=0.600  Sum_probs=37.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQI-HTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHT-TSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            45677888889999999999999999999887 788888988876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4e-13  Score=66.70  Aligned_cols=44  Identities=27%  Similarity=0.517  Sum_probs=37.1

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHH-TSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            55677888888898899999999999999887 788888888876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.34  E-value=3.8e-13  Score=66.76  Aligned_cols=44  Identities=25%  Similarity=0.501  Sum_probs=38.4

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGG-GTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHH-hCCCCCCCCCCC
Confidence            45678888999999999999999999999988 788899999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.2e-13  Score=67.01  Aligned_cols=44  Identities=27%  Similarity=0.595  Sum_probs=37.7

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGG-GSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            45677888899999999999999999999887 788889999877

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.33  E-value=3.2e-13  Score=67.07  Aligned_cols=44  Identities=34%  Similarity=0.563  Sum_probs=37.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHH-HSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            45677888889999999999999999999887 788888988877

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=4e-13  Score=66.68  Aligned_cols=44  Identities=25%  Similarity=0.450  Sum_probs=38.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGG-GTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            45677888999999999999999999999988 788899999887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.6e-13  Score=66.81  Aligned_cols=44  Identities=25%  Similarity=0.488  Sum_probs=36.5

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHH-HSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            45667788888888888888888888888887 778888888876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.9e-13  Score=67.20  Aligned_cols=44  Identities=23%  Similarity=0.480  Sum_probs=36.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHH-HSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            45667788888888888888888888888887 778888888876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.5e-13  Score=66.92  Aligned_cols=44  Identities=27%  Similarity=0.512  Sum_probs=37.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTT-TCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            45667888899999999999999999999887 788899999877

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.8e-13  Score=66.64  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=35.1

Q ss_pred             HHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          74 MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      ++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHH-HTSSCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            4567778888888888888888888888887 778888888876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.8e-13  Score=66.38  Aligned_cols=44  Identities=25%  Similarity=0.518  Sum_probs=37.5

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGG-GCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            55678888889999999999999999999887 788888988877

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=3.5e-13  Score=66.92  Aligned_cols=44  Identities=25%  Similarity=0.530  Sum_probs=39.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGG-GSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            55678889999999999999999999999998 888999999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.33  E-value=3.4e-13  Score=66.93  Aligned_cols=44  Identities=32%  Similarity=0.584  Sum_probs=36.7

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTG-GGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            45667888888888888888888888888887 778888888876

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=3.5e-13  Score=66.91  Aligned_cols=44  Identities=23%  Similarity=0.507  Sum_probs=37.7

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTT-TSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            45677888899999999999999999999887 788889999877

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.5e-13  Score=66.48  Aligned_cols=44  Identities=27%  Similarity=0.601  Sum_probs=38.5

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGG-GSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            56678888999999999999999999999988 788899999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.2e-13  Score=67.03  Aligned_cols=44  Identities=30%  Similarity=0.560  Sum_probs=35.1

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRT-HAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHH-HTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHH-cCCCCCCCCCCC
Confidence            45567778888888888888888888888887 777888888776

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.2e-13  Score=66.57  Aligned_cols=44  Identities=25%  Similarity=0.381  Sum_probs=37.2

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHH-CCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            45667888889999999999999999999887 788888988876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.4e-13  Score=66.97  Aligned_cols=44  Identities=27%  Similarity=0.573  Sum_probs=35.5

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHH-HSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHH-HCCCCCCCCCCC
Confidence            45567778888888888888888888888887 677888888876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4e-13  Score=66.68  Aligned_cols=44  Identities=27%  Similarity=0.647  Sum_probs=35.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHH-HTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHH-cCCCCCCCCCCC
Confidence            45567788888888888888888888888887 778888888876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.6e-13  Score=66.88  Aligned_cols=44  Identities=25%  Similarity=0.480  Sum_probs=38.1

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-HTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTT-SCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHh-hCCCCCCCCCCC
Confidence            45677888999999999999999999999988 788899999887

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4.8e-13  Score=66.37  Aligned_cols=44  Identities=23%  Similarity=0.383  Sum_probs=37.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTT-TCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            45667888889999999999999999999887 788889988876

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.31  E-value=4.1e-14  Score=74.99  Aligned_cols=58  Identities=16%  Similarity=0.205  Sum_probs=46.9

Q ss_pred             HHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhccccc
Q psy7353          72 NHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDS  133 (139)
Q Consensus        72 ~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  133 (139)
                      .|++.|++++||.|..|++.|.....|.   ++ |.+++||.|+.|++.|.....+..+..+
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~-H~~~k~~~C~~C~k~f~~~~~~~~~~~t   61 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LF-DPMTGTFRCTFCHTEVEEDESAMPKKDA   61 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HE-ETTTTEEBCSSSCCBCEECTTCSCCCCC
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hh-cCCCCCEECCCCCCccccCccccccccC
Confidence            4566788889999999999998888775   55 7888999999999999888887766543

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.3e-13  Score=65.96  Aligned_cols=44  Identities=25%  Similarity=0.503  Sum_probs=38.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhh-hhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMK-TVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|++ + |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~-H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYY-HTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTT-TTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhh-cCCCCCCCCCCC
Confidence            4567888899999999999999999999998 6 888899999887

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=5.6e-12  Score=71.91  Aligned_cols=63  Identities=25%  Similarity=0.341  Sum_probs=56.2

Q ss_pred             cceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCce--------eecCCCCCcCCChHHHHHHHHHhcCCCcccCC
Q psy7353          17 GIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKV--------FPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCP   86 (139)
Q Consensus        17 ~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~--------~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (139)
                      ..+.|+.|++     .|.....|..|++..|.+  .++        |.|+.|++.|.....|..|++.|+++++|.|.
T Consensus        24 ~~~~C~~C~k-----~f~~~~~L~~H~~~~H~~--~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDR-----TFSTMHELVTHVTMEHVG--GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCC-----CCSSHHHHHHHHHHTTTC--CTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCccccccc-----ccCCHHHHHHHHHHhccC--CCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            3467999999     999999999998765766  555        89999999999999999999999999999986

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=5.9e-13  Score=66.07  Aligned_cols=44  Identities=27%  Similarity=0.520  Sum_probs=36.4

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHH-SCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHH-hCCCCCCCCCCC
Confidence            45567788888888888888888888888887 788888888876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.8e-13  Score=67.24  Aligned_cols=44  Identities=27%  Similarity=0.564  Sum_probs=34.7

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHH-HHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            45567778888888888888888888888887 677788888776

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.1e-13  Score=66.01  Aligned_cols=44  Identities=27%  Similarity=0.531  Sum_probs=37.7

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTT-TTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            45678888899999999999999999999987 788899998875

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.5e-13  Score=66.90  Aligned_cols=44  Identities=27%  Similarity=0.452  Sum_probs=34.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHH-HHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            45567778888888888888888888888887 677788888776

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.30  E-value=7.2e-13  Score=65.76  Aligned_cols=44  Identities=23%  Similarity=0.420  Sum_probs=36.9

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGG-GCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            34567888889999999999999999999887 788888988877

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.3e-13  Score=66.99  Aligned_cols=44  Identities=25%  Similarity=0.528  Sum_probs=36.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHH-HHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            45567888888888888888888888888887 778888888876

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.8e-13  Score=66.43  Aligned_cols=44  Identities=25%  Similarity=0.497  Sum_probs=36.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHH-HHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            45567788888888898888888888888887 778888888876

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.4e-12  Score=68.78  Aligned_cols=54  Identities=26%  Similarity=0.382  Sum_probs=33.0

Q ss_pred             CCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC-CCCCCCCCCcchhccccccc
Q psy7353          79 QRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP-QGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~~~  135 (139)
                      +.++|.|..|++.|. ...|..|+++  .+++||.|+ +|++.|..+..|..|++.|-
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~--~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ--CPRLPVACPNQCGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH--CSSSEEECTTCCSCCEEETTTHHHHHHTTS
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH--cCCcCccCCcccCcccccHHHHHHHHHhhc
Confidence            345666666666666 6666666654  555666666 66666666666666665543

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.6e-13  Score=66.87  Aligned_cols=44  Identities=25%  Similarity=0.505  Sum_probs=34.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHH-HHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHH-HcCCCCCCCCCC
Confidence            45567777888888888888888888888887 677788888776

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=5.6e-13  Score=66.14  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=34.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVL-HMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHH-HSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            44567777888888888888888888888887 677788888776

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.3e-13  Score=66.23  Aligned_cols=44  Identities=30%  Similarity=0.559  Sum_probs=35.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHH-HSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHH-cCCCCCCCCCCC
Confidence            45567788888888888888888888888887 777888888876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=6.6e-13  Score=65.90  Aligned_cols=44  Identities=23%  Similarity=0.420  Sum_probs=34.1

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHH-HHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHH-HcCCCCCCCCCC
Confidence            34567777888888888888888888888887 677788888776

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.26  E-value=1.3e-12  Score=70.94  Aligned_cols=53  Identities=30%  Similarity=0.703  Sum_probs=32.3

Q ss_pred             CceeecCC--CCCcCCChHHHHHHHHHhcCCCcccCCC--CCccCCChhHHHhhhhh
Q psy7353          52 RKVFPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPCPV--CGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        52 ~~~~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~  104 (139)
                      .++|.|..  |++.|.....|..|++.|+++++|.|..  |++.|.....|..|+++
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            45566655  6666666666666666666666666643  66666666666666554

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.5e-12  Score=64.56  Aligned_cols=44  Identities=27%  Similarity=0.562  Sum_probs=34.9

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHH-HCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            45567778888888888888888888888887 677888888764

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.23  E-value=2.4e-12  Score=62.53  Aligned_cols=41  Identities=24%  Similarity=0.496  Sum_probs=33.9

Q ss_pred             HHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          74 MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      ++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   42 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRT-HAGESGPSSG   42 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGG-GCCCCSCCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHh-cCCCCCCCCC
Confidence            4567788888888888888888888888887 7788888875

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.23  E-value=7.7e-12  Score=62.54  Aligned_cols=42  Identities=26%  Similarity=0.475  Sum_probs=34.6

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCC
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQR  119 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~  119 (139)
                      +.++++|.|..|++.|.....|..|+++ |.+++||.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGG-SCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHh-cCCCCCccCCCCCC
Confidence            4567788888888888888888888887 77888888888874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.2e-12  Score=62.91  Aligned_cols=43  Identities=26%  Similarity=0.560  Sum_probs=37.4

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGG-GTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHh-cCCCCCCCCCC
Confidence            45678888999999999999999999999988 78889999874

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.1e-12  Score=62.95  Aligned_cols=43  Identities=28%  Similarity=0.545  Sum_probs=37.2

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGG-GCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCCCCCCC
Confidence            45678888999999999999999999999988 78889998874

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.4e-12  Score=61.93  Aligned_cols=41  Identities=20%  Similarity=0.404  Sum_probs=34.0

Q ss_pred             HHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          74 MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      ++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   42 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKM-HTVKSGPSSG   42 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHH-TSCCSSCCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHH-hCCCCCCCCC
Confidence            4567788888888888888888888888887 7888888874

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=4.6e-14  Score=76.78  Aligned_cols=61  Identities=11%  Similarity=0.170  Sum_probs=53.9

Q ss_pred             HHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353          69 KMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus        69 ~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      .|..|++.|.++++|.|..|++.|.....|..        +++|.|+.|++.|.....|..|++.|+++
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~   65 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGNESGK   65 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSCCCCC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHhhcCC
Confidence            45567788899999999999999999888766        67999999999999999999999998754

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.23  E-value=6.9e-12  Score=61.83  Aligned_cols=42  Identities=33%  Similarity=0.723  Sum_probs=33.0

Q ss_pred             HhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCC
Q psy7353          76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQ  118 (139)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~  118 (139)
                      .|+++++|.|..|++.|.....|..|+++ |.++++|.|+.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHH-HSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHH-ccCCCCCCCcCCC
Confidence            45677788888888888888888888887 6777888888775

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.7e-12  Score=63.08  Aligned_cols=43  Identities=23%  Similarity=0.455  Sum_probs=36.7

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTT-TTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHh-hCCCCCCCCCC
Confidence            45677888999999999999999999999887 78889998874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.8e-12  Score=63.55  Aligned_cols=43  Identities=23%  Similarity=0.508  Sum_probs=36.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTT-TSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            45677888899999999999999999999887 78888998874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4e-12  Score=62.98  Aligned_cols=43  Identities=19%  Similarity=0.395  Sum_probs=36.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHH-CSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            45677888899999999999999999999888 78888998874

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.7e-12  Score=62.75  Aligned_cols=43  Identities=30%  Similarity=0.632  Sum_probs=37.1

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTT-TSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCCCCCCC
Confidence            45678888999999999999999999999887 78889998874

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.4e-12  Score=62.81  Aligned_cols=43  Identities=23%  Similarity=0.465  Sum_probs=37.1

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTT-TSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHh-cCCCCCCCCCC
Confidence            45678888999999999999999999999988 78889998874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.9e-12  Score=62.69  Aligned_cols=43  Identities=26%  Similarity=0.508  Sum_probs=37.5

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTT-TTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHh-cCCCCCCCCCC
Confidence            45678889999999999999999999999988 88899999874

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.7e-12  Score=62.71  Aligned_cols=43  Identities=26%  Similarity=0.448  Sum_probs=36.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKI-HTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTT-TSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            45677888899999999999999999999987 78889998864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2.9e-12  Score=63.53  Aligned_cols=43  Identities=21%  Similarity=0.463  Sum_probs=34.2

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHH-HSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHh-cCCCCCCCCCC
Confidence            45567788888888888888888888888887 67788888864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.2e-12  Score=62.86  Aligned_cols=43  Identities=23%  Similarity=0.482  Sum_probs=36.7

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGG-TSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHh-cCCCCCcCCCC
Confidence            45677888899999999999999999999887 78889998874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.8e-12  Score=62.33  Aligned_cols=43  Identities=23%  Similarity=0.495  Sum_probs=36.7

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGG-GSSSCCCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            45677888899999999999999999999988 78889998874

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.20  E-value=3.3e-12  Score=63.32  Aligned_cols=43  Identities=28%  Similarity=0.535  Sum_probs=34.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHH-HTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            45567788888888888888888888888887 77788888864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.5e-12  Score=62.45  Aligned_cols=43  Identities=23%  Similarity=0.457  Sum_probs=36.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTT-TCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            45677888899999999999999999999987 78888998874

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.8e-12  Score=63.08  Aligned_cols=42  Identities=31%  Similarity=0.582  Sum_probs=35.7

Q ss_pred             HHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          75 KTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTH-HHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            457788889999999999999999999888 778888988877

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.8e-12  Score=62.68  Aligned_cols=43  Identities=21%  Similarity=0.475  Sum_probs=35.8

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI-HRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGG-GCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhH-hCCCCCCCCCC
Confidence            45677888889999999999999999999887 78888888864

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=9.5e-12  Score=61.57  Aligned_cols=42  Identities=26%  Similarity=0.525  Sum_probs=35.8

Q ss_pred             HHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          75 KTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTT-TSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHH-hCCCCCCCCCCC
Confidence            457788889999999999999999999887 788889988877

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.7e-12  Score=63.11  Aligned_cols=43  Identities=28%  Similarity=0.538  Sum_probs=34.4

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHH-HCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            45567778888888888888888888888887 77788888864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.5e-12  Score=62.75  Aligned_cols=43  Identities=26%  Similarity=0.459  Sum_probs=35.4

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHT-SCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            45567788888888888888888888888887 78888888864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.5e-12  Score=61.79  Aligned_cols=42  Identities=24%  Similarity=0.380  Sum_probs=35.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTT-TCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhh-cCCCCCCCCC
Confidence            45677888899999999999999999999987 7888888885

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.1e-12  Score=62.88  Aligned_cols=43  Identities=26%  Similarity=0.461  Sum_probs=33.5

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHH-HCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHH-cCCCCCCCCCC
Confidence            44567778888888888888888888888887 67788888764

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=6.9e-12  Score=60.81  Aligned_cols=41  Identities=24%  Similarity=0.485  Sum_probs=35.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATT  114 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C  114 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGG-TSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHH-hCCCCCCCC
Confidence            45667888999999999999999999999988 788888877

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.3e-12  Score=62.47  Aligned_cols=43  Identities=23%  Similarity=0.509  Sum_probs=35.9

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTT-TSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHH-cCCCCCCCCCC
Confidence            45667888889999999999999999999887 78888888864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=8.3e-12  Score=61.81  Aligned_cols=43  Identities=26%  Similarity=0.502  Sum_probs=36.9

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGG-SCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            34567888999999999999999999999998 78889998864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.6e-12  Score=62.13  Aligned_cols=42  Identities=31%  Similarity=0.522  Sum_probs=35.9

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT-HSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTT-SSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHH-cCCCCCCCCC
Confidence            45678888899999999999999999999888 7888888885

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7e-12  Score=62.10  Aligned_cols=43  Identities=23%  Similarity=0.513  Sum_probs=34.7

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHH-HTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHH-cCCCCCCCCCC
Confidence            45567788888888888888888888888887 77888888864

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.18  E-value=3.8e-11  Score=65.03  Aligned_cols=56  Identities=21%  Similarity=0.370  Sum_probs=37.1

Q ss_pred             cCCCcccCCC--CCccCCChhHHHhhhhhhcCCCCCCCCCC--CCCCCCCCcchhcccccc
Q psy7353          78 CQRKVFPCPV--CGKEFSRPDKMKNHMKTVHDCFMPATTPQ--GQRGQRASPVIDFHKDSV  134 (139)
Q Consensus        78 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~  134 (139)
                      ...++|.|..  |++.|.....|..|+++ |.+++||.|+.  |++.|.....|..|++.|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHH-HSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHh-cCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3445667766  77777777777777766 56667777743  777777777777776543

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.4e-12  Score=61.55  Aligned_cols=42  Identities=21%  Similarity=0.385  Sum_probs=33.5

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHH-TTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHH-hCCCCCCCCC
Confidence            45567778888888888888888888888887 7778888774

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.3e-12  Score=62.84  Aligned_cols=43  Identities=23%  Similarity=0.511  Sum_probs=33.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHH-HHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHh-cCCCCCCCCCC
Confidence            45567778888888888888888888888887 67778888864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=6.6e-12  Score=61.57  Aligned_cols=42  Identities=19%  Similarity=0.410  Sum_probs=34.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERT-HARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHH-CCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHh-cCCCCCCCCC
Confidence            45567788888888888888888888888887 7788888874

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=7.2e-12  Score=62.05  Aligned_cols=43  Identities=23%  Similarity=0.437  Sum_probs=36.1

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCC-CCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDC-FMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~-~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+ ++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERI-HTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTT-CCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            45667888899999999999999999999887 777 88998864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.9e-12  Score=62.66  Aligned_cols=43  Identities=23%  Similarity=0.452  Sum_probs=33.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHH-HTCCCBTTTBC
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHH-cCCCCCCCCCC
Confidence            45567777888888888888888888888887 67778888763

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=8.8e-12  Score=61.11  Aligned_cols=42  Identities=24%  Similarity=0.426  Sum_probs=35.2

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKT-HAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGG-GCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHH-cCCCCCcCCC
Confidence            45667888889999999999999999999887 7888888874

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=9.1e-12  Score=60.42  Aligned_cols=41  Identities=24%  Similarity=0.603  Sum_probs=34.1

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATT  114 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C  114 (139)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTT-TSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHh-cCCCCCCCC
Confidence            34567788889999999999999999999887 788888876

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=8.4e-12  Score=61.74  Aligned_cols=43  Identities=26%  Similarity=0.479  Sum_probs=36.8

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTT-SCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            45677888999999999999999999999988 78889998864

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.15  E-value=5.3e-12  Score=64.76  Aligned_cols=50  Identities=14%  Similarity=0.349  Sum_probs=34.9

Q ss_pred             CcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCC
Q psy7353          62 KEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPA  112 (139)
Q Consensus        62 ~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (139)
                      +.|.....|..|++.|+++++|.|..|++.|...+.|..|+++ |.+++||
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLEL-RHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHH-HTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHH-hccCCCC
Confidence            3455555566677777777777777777777777777777776 6666665

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=6.3e-11  Score=60.68  Aligned_cols=42  Identities=36%  Similarity=0.661  Sum_probs=23.4

Q ss_pred             CceeecCCCCCcCCChHHHHHHHH-HhcCCCcccCCCCCccCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMK-TGCQRKVFPCPVCGKEFS   93 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~-~~~~~~~~~C~~C~~~f~   93 (139)
                      +++|.|++|++.|.....|..|++ .|.++++|.|..|++.|.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~   52 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS   52 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence            455555555555555555555554 555555555555555554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=6.7e-12  Score=62.17  Aligned_cols=43  Identities=23%  Similarity=0.492  Sum_probs=33.9

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHH-HSSCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            45567778888888888888888888888887 67788888763

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.14  E-value=1.1e-11  Score=60.12  Aligned_cols=40  Identities=18%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             HHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCC
Q psy7353          74 MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATT  114 (139)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C  114 (139)
                      ++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|
T Consensus         3 ~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~-H~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQSGPSSG   42 (42)
T ss_dssp             CSCCCSSCCEECSSSCCEESSHHHHHHHHHH-TTCCCCCCC
T ss_pred             CccCCCCCCeECCCCCcccCCHHHHHHHhhh-cCCCCCCCC
Confidence            4456777888888888888888888888877 777788776

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.3e-11  Score=60.48  Aligned_cols=42  Identities=19%  Similarity=0.334  Sum_probs=33.2

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |++.|.++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQAL-HAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHH-HTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHH-HCCCCCCCCC
Confidence            34567778888888888888888888888887 7778888774

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=6.2e-11  Score=58.54  Aligned_cols=45  Identities=24%  Similarity=0.367  Sum_probs=30.9

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGK-----AFSHRQSLSVHQRI-HSG--KKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCC-----EESSHHHHHHHHGG-GSS--CCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCC-----ccCCHHHHHHHHHH-hcC--CCCCCCCCC
Confidence            4566677777777777777     67777777777655 555  667777655

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=8.9e-12  Score=61.70  Aligned_cols=43  Identities=23%  Similarity=0.512  Sum_probs=34.5

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      |++.|.++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL-HSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHH-HHHTTCCCSCC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            45567788888888888888888888888887 67788888863

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=4.1e-11  Score=58.42  Aligned_cols=40  Identities=18%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             HhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      .|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQ-THSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHH-HTCTTCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHh-hCCCCCccCCC
Confidence            46677888888888888888888888887 67788888864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=9.9e-12  Score=60.92  Aligned_cols=42  Identities=26%  Similarity=0.460  Sum_probs=35.3

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHH-HCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHH-hCCCCCCCCC
Confidence            45677888899999999999999999999888 7888888874

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=7.5e-12  Score=60.70  Aligned_cols=41  Identities=20%  Similarity=0.444  Sum_probs=31.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATT  114 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C  114 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHH-HHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHH-cCCCCCCCC
Confidence            34567777888888888888888888888887 677788776

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.11  E-value=7.1e-11  Score=58.31  Aligned_cols=45  Identities=27%  Similarity=0.383  Sum_probs=30.3

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGK-----VFSRNSQLSQHQKI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCC-----EESSHHHHHHHHTG-GGC--CCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcc-----hhCCHHHHHHHHHh-cCC--CCCCCCCCC
Confidence            4566667777777777777     67777777777655 555  566777654

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.11  E-value=8.6e-11  Score=58.04  Aligned_cols=45  Identities=24%  Similarity=0.349  Sum_probs=28.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGK-----AFSQTTHLIQHQRV-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCC-----BCSCHHHHHHHHHH-HSS--CCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCc-----hhCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            4555666666677777776     66666666666654 444  566666654

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=9.3e-11  Score=57.88  Aligned_cols=45  Identities=27%  Similarity=0.367  Sum_probs=31.8

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGK-----VFTQNSHLARHRGI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCC-----BCSSHHHHHHHGGG-TSC--CCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCC-----eeCCHHHHHHHhhh-cCC--CCCCCCCCC
Confidence            4566677777777777777     77777777777655 555  667777665

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=8.4e-11  Score=58.07  Aligned_cols=45  Identities=22%  Similarity=0.367  Sum_probs=32.0

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGK-----GYNRRLNLDMHQRV-HMG--EKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCC-----BCSSHHHHHHHGGG-GGS--CCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCc-----hhCCHHHHHHHHHh-cCC--CCCCCCCCC
Confidence            4566777777777777777     77777777777665 555  667777665

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=9.5e-11  Score=57.82  Aligned_cols=45  Identities=24%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGK-----SFTWKSRLRIHQKC-HTG--ERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCC-----BCSSHHHHHHHHHH-HSC--CSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccCh-----hhCCHHHHHHHHHh-cCC--CCCCCCCCC
Confidence            4555666666677777776     66666666666654 444  566666654

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=8.8e-11  Score=57.98  Aligned_cols=45  Identities=29%  Similarity=0.421  Sum_probs=28.4

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGK-----AFSRKYQLISHQRT-HAG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCC-----EESSHHHHHHHHHH-HTT--SCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCc-----ccCcHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            4555666666666666666     66666666666655 444  566666654

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.4e-11  Score=60.59  Aligned_cols=42  Identities=33%  Similarity=0.707  Sum_probs=35.5

Q ss_pred             HHhcCCCcccCC--CCCccCCChhHHHhhhhhhcCCCCCCCCCCC
Q psy7353          75 KTGCQRKVFPCP--VCGKEFSRPDKMKNHMKTVHDCFMPATTPQG  117 (139)
Q Consensus        75 ~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C  117 (139)
                      +.|+++++|.|.  .|++.|.....|..|+++ |.+++||.|+.|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTT-SCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            457788888887  799999999999999888 788889988877

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=9.5e-11  Score=57.85  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=28.2

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGK-----AFTIRSNLIKHQKI-HTK--QKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCC-----EESSHHHHHHHHHH-TSC--CCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCCh-----hhCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            4555666666666666666     66666666666654 555  566666554

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=8e-11  Score=58.12  Aligned_cols=45  Identities=29%  Similarity=0.416  Sum_probs=31.0

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGK-----VFRHNSYLSRHQRI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCC-----EESSHHHHHHHHTT-TCC--CCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCc-----hhCChHHHHHHHhh-cCC--CCCCCCCCC
Confidence            4566677777777777777     77777777777655 555  667777665

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.3e-11  Score=59.64  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=33.6

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |++.|+++++|.|..|++.|...+.|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERT-HAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGG-GSSCSCCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhH-hcCCCCCCCC
Confidence            45567788888888888888888888888887 7788888763

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.10  E-value=8.5e-11  Score=58.00  Aligned_cols=45  Identities=27%  Similarity=0.232  Sum_probs=31.5

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAK-----TFSLKSQLIVHQRS-HTG--VKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSC-----EESSHHHHHHHGGG-SSS--CCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCc-----hhCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            4566677777777777777     77777777777655 555  667777665

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=9.3e-11  Score=57.87  Aligned_cols=45  Identities=27%  Similarity=0.339  Sum_probs=29.4

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGK-----VFTQNSHLTNHWRI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCC-----EESSHHHHHHHHHH-HSS--SSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCC-----ccCCHHHHHHHHHH-HCC--CCCCCCCCC
Confidence            4556666677777777776     67777777777655 444  566666654

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=8.4e-12  Score=61.77  Aligned_cols=42  Identities=26%  Similarity=0.523  Sum_probs=32.8

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |++.|+++++|.|..|++.|.....|..|+++ |.+++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHH-HHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHH-hCCCCCCCCC
Confidence            45567778888888888888888888888877 6777888775

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=8.4e-11  Score=58.06  Aligned_cols=45  Identities=24%  Similarity=0.297  Sum_probs=29.2

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGK-----AFSVYSSLTTHQVI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCC-----EESCHHHHHHHHHH-HHC--CSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCc-----hhCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            4556666667777777776     67777777777655 444  566666654

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1e-10  Score=57.74  Aligned_cols=45  Identities=22%  Similarity=0.337  Sum_probs=32.4

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGK-----AFTRKSTLSMHQKI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCC-----EESCHHHHHHHGGG-TSC--SSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCc-----hhCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            4566777777777777777     77777777777765 555  677777665

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=4.6e-11  Score=59.06  Aligned_cols=41  Identities=22%  Similarity=0.430  Sum_probs=33.4

Q ss_pred             HHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          75 KTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|+.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHH-HSSCCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHH-hCCCCCCCCCC
Confidence            456778888888888888888888888887 77888888863

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=8.7e-11  Score=57.99  Aligned_cols=45  Identities=22%  Similarity=0.345  Sum_probs=29.7

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGK-----AFTDRSNLIKHQKI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCC-----EESSHHHHHHHHHH-HHC--SSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCc-----hhCCHHHHHHHHHh-cCC--CCCCCCCCC
Confidence            4556666677777777777     67777777777654 544  566666654

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=9.4e-11  Score=57.86  Aligned_cols=45  Identities=29%  Similarity=0.464  Sum_probs=30.3

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGK-----VFRRNSHLARHQLI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCC-----EESSHHHHHHHHTT-TCC--CCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCc-----hhCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            4556667777777777777     67777777777654 555  566777655

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=9.5e-11  Score=57.82  Aligned_cols=45  Identities=22%  Similarity=0.206  Sum_probs=31.3

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGK-----NFCYISALRIHQRV-HMG--EKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCC-----EESSHHHHHHHHTT-TCC--SCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCc-----ccCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            4666677777777777777     77777777777654 555  667777655

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.2e-10  Score=57.38  Aligned_cols=45  Identities=27%  Similarity=0.411  Sum_probs=30.3

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGK-----SFSRAPCLLKHERL-HSG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTB-----CCSCHHHHHHHHHH-CCS--SSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCC-----ccCchHHHHHHHHh-cCC--CCCCCCCCC
Confidence            4556667777777777777     67777777777655 555  666777655

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.09  E-value=1e-10  Score=57.74  Aligned_cols=45  Identities=24%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGK-----SFRWASCLLKHQRV-HSG--EKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCC-----EESSHHHHHHHGGG-GTS--CCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCcccc-----ccCChHHHHHHHHH-hCC--CCCCCCCCC
Confidence            4666777777777777777     77777777777655 555  667777665

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1e-10  Score=57.72  Aligned_cols=45  Identities=24%  Similarity=0.345  Sum_probs=28.3

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGK-----SFTKKSQLHVHQQI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCC-----EESSHHHHHHHHHT-TSS--CCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCc-----ccCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            3555666666666666666     66666666666654 555  566666654

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.2e-10  Score=57.45  Aligned_cols=45  Identities=22%  Similarity=0.331  Sum_probs=27.9

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGK-----SFCGRSRLNRHSMV-HTA--EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCC-----CCSSHHHHHHHHHH-TTC--CCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCc-----hhCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            3555666666666666666     66666666666554 554  566666554

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=8.6e-11  Score=58.03  Aligned_cols=45  Identities=22%  Similarity=0.187  Sum_probs=28.5

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGK-----NFGRHSHLIEHLKR-HFR--EKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCC-----EESSHHHHHHHHHH-HHS--TTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCc-----ccCCHHHHHHHHHH-HcC--CCCCCCCCC
Confidence            4555666666666766666     66666666666655 444  566666654

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.3e-10  Score=57.38  Aligned_cols=45  Identities=24%  Similarity=0.263  Sum_probs=28.2

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGE-----IFFQYVSLIEHQVL-HMG--QKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCC-----EESSHHHHHHHHHH-HSC--CSCCCTTCC
T ss_pred             CcccccCCCCCEEccccCh-----hhCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            4555666666666666666     66666666666654 444  566666554

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.3e-10  Score=57.29  Aligned_cols=45  Identities=24%  Similarity=0.252  Sum_probs=29.7

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGK-----GFYTNSQCYSHQRS-HSG--EKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCC-----EESSHHHHHHHHHH-SCC--SSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCC-----cCCChHHHHHHHHH-hCC--CCCCCCCCC
Confidence            4556666677777777777     67777777777654 555  566666655

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.1e-10  Score=57.55  Aligned_cols=45  Identities=27%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGK-----GFICRRDLYTHHMV-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCC-----EESCHHHHHHHGGG-GTT--CCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccc-----hhCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            4566677777777777777     77777777777655 555  667777665

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.1e-10  Score=57.57  Aligned_cols=45  Identities=24%  Similarity=0.357  Sum_probs=27.9

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.+...|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGK-----AFHRHTHLNEHRRI-HTG--YRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCC-----EESSHHHHHHHHHH-HTC--CCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCC-----eeCChHHHHHHHHH-cCC--CCCCCCCCC
Confidence            4555666666666666666     66666666666554 444  566666554

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.1e-10  Score=57.67  Aligned_cols=45  Identities=20%  Similarity=0.275  Sum_probs=30.5

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGR-----GFTLKSHLNQHQRI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCC-----EESSHHHHHHHHTT-TSC--SCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCC-----ccCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            4566667777777777777     67777777777655 555  666777655

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.4e-10  Score=57.14  Aligned_cols=45  Identities=24%  Similarity=0.261  Sum_probs=28.7

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGK-----AFGLSAELVRHQRI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCC-----EESSHHHHHHHHGG-GCC--CSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCCh-----hhCCHHHHHHHHHh-cCC--CCCCCCCCC
Confidence            4555666666677777776     67776667777654 554  566666654

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1e-10  Score=57.70  Aligned_cols=45  Identities=27%  Similarity=0.352  Sum_probs=28.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGK-----VFTQNSHLANHQRI-HTG--VKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTE-----ECSSHHHHHHHHGG-GSC--CCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcCh-----hhCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            3555666666677777776     66666667666654 555  566666654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=7.8e-11  Score=56.71  Aligned_cols=38  Identities=24%  Similarity=0.546  Sum_probs=31.7

Q ss_pred             HhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCC
Q psy7353          76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATT  114 (139)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C  114 (139)
                      .|+++++|.|..|++.|.....|..|+++ |.+++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERI-HTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGG-CCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHH-hCCCCCcCC
Confidence            46778888888888888888888888887 788888876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.2e-10  Score=57.45  Aligned_cols=45  Identities=27%  Similarity=0.292  Sum_probs=29.8

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGK-----AFSSKSYLIIHMRT-HSG--EKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCC-----BCSCHHHHHHHHTT-TCC--SCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccCh-----hhCChHHHHHHHHH-hCC--CCCCCCCCC
Confidence            4556666777777777777     67777777777655 555  566666655

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.07  E-value=1.3e-10  Score=57.40  Aligned_cols=45  Identities=24%  Similarity=0.313  Sum_probs=29.7

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDM-----CFSQASSLRLHQNV-HVG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCC-----CCSSHHHHHHHGGG-GSS--SSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCc-----ccCCHHHHHHHHHH-cCC--CCCcCCCCC
Confidence            4556666677777777777     67777777777655 555  566666654

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.07  E-value=9.7e-11  Score=57.85  Aligned_cols=45  Identities=27%  Similarity=0.384  Sum_probs=26.9

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGK-----GFSRRSALNVHHKL-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCC-----CBSSTTHHHHHHHH-HSC--CSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCc-----ccCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            3555566666666666666     66666666666554 444  556666554

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.2e-10  Score=57.50  Aligned_cols=45  Identities=29%  Similarity=0.404  Sum_probs=31.1

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGK-----AFSQTSKLARHQRI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCC-----CCSSHHHHHHHHTT-TTT--CSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCC-----ccCCHHHHHHHHHh-cCC--CCCCCCCCC
Confidence            4566677777777777777     77777777777655 555  567777665

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1e-10  Score=57.74  Aligned_cols=45  Identities=22%  Similarity=0.397  Sum_probs=31.8

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGK-----GYNSKFNLDMHQKV-HTG--ERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTE-----EESCHHHHHHHHTT-SCS--CCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCC-----ccCCHHHHHHHHHh-hCC--CCCCCCCCC
Confidence            4666777777777777777     77777777777655 555  667777665

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.3e-10  Score=57.31  Aligned_cols=45  Identities=24%  Similarity=0.167  Sum_probs=28.4

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGK-----AFCWKSQLIMHQRT-HVD--DKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCC-----EESSSHHHHHHHHH-CCS--CCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCC-----ccCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            3555666666666766666     66666666666654 555  566666654

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.2e-10  Score=57.53  Aligned_cols=45  Identities=29%  Similarity=0.321  Sum_probs=29.5

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGK-----TFSQKSILSAHQRT-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTE-----EESSHHHHHHHHHH-HSS--CCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCc-----ccCchHHHHHHHHH-cCC--CCCCCCCCC
Confidence            4556666677777777776     67777777777655 544  566666654

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.5e-10  Score=56.60  Aligned_cols=43  Identities=23%  Similarity=0.230  Sum_probs=24.0

Q ss_pred             eeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353          10 RYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus        10 ~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEK-----AFSSKSYLLVHQQT-HAE--EKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSC-----EESSHHHHHHHHHH-HTS--SCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCc-----ccCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            34555556666666665     56666666666544 444  455555544

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.2e-10  Score=57.45  Aligned_cols=44  Identities=25%  Similarity=0.303  Sum_probs=24.8

Q ss_pred             eeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           9 FRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         9 ~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      |+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGK-----SFIQSAHLIQHQRI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCC-----EESSHHHHHHHHHH-HSC--CCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCCh-----hhCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            445555556666666665     56666666666544 444  455555544

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7.7e-11  Score=57.94  Aligned_cols=41  Identities=24%  Similarity=0.513  Sum_probs=33.5

Q ss_pred             HHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          75 KTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        75 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      +.|+++++|.|..|++.|.....|..|+++ |.+++||.|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGEKSGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTT-TSSCCCCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHH-hCCCCCCCCCC
Confidence            356778888888888888888888888887 77888888863

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.5e-10  Score=57.09  Aligned_cols=45  Identities=24%  Similarity=0.393  Sum_probs=31.7

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGK-----AFTDRSNLFTHQKI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCC-----EESSHHHHHHHHTT-TTT--SCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCc-----hhCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            4666777777777777777     77777777777655 555  667777653

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.6e-10  Score=57.01  Aligned_cols=45  Identities=20%  Similarity=0.224  Sum_probs=29.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGK-----SFSFNSQLIVHQRI-HTG--ENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCC-----BCSSHHHHHHHHTT-TTT--SCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCc-----hhCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            3555666677777777777     67777777777655 555  566666654

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.3e-10  Score=57.40  Aligned_cols=45  Identities=31%  Similarity=0.445  Sum_probs=29.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGK-----AFGDNSSCTQHQRL-HTG--QRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTB-----CCSSHHHHHHHHHH-HHS--CCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCc-----hhCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            4556666677777777777     67777777777655 444  566666655

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1e-10  Score=57.71  Aligned_cols=45  Identities=22%  Similarity=0.366  Sum_probs=33.1

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGK-----SYNQRVHLTQHQRV-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCC-----EESSSHHHHTTGGG-GSS--CCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCc-----ccCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            4666777778888888887     78888888888765 555  677777765

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.6e-10  Score=56.97  Aligned_cols=45  Identities=20%  Similarity=0.398  Sum_probs=29.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGK-----AFSDHIGLNQHRRI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCC-----CBSSHHHHHHHHTT-TTT--CCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCc-----eeCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            3556666677777777777     67777777777654 555  566666654

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.2e-10  Score=57.54  Aligned_cols=45  Identities=24%  Similarity=0.345  Sum_probs=29.1

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGK-----RFTQNSQLHSHQRV-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTE-----EESSHHHHHHHGGG-GSC--CCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCc-----ccCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            3555666667777777776     67777777777654 555  566666654

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=9.4e-11  Score=57.87  Aligned_cols=45  Identities=29%  Similarity=0.382  Sum_probs=28.5

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGK-----VFTQNSHLARHRRV-HTG--GKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCC-----EESSSHHHHHHTHH-HHS--CCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCc-----hhCCHHHHHHHHHh-cCC--CCCCCCCCC
Confidence            4555666666677777776     66666666666654 444  566666654

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.05  E-value=2.1e-10  Score=56.63  Aligned_cols=45  Identities=22%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEK-----SFSGKLRLLVHQRM-HTR--EKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSC-----EESSHHHHHHHHGG-GCC--SSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCc-----ccCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            3555666667777777776     67777777777654 555  566666654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.8e-10  Score=56.81  Aligned_cols=45  Identities=27%  Similarity=0.423  Sum_probs=28.8

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGK-----GYKRRLDLDFHQRV-HTG--EKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCC-----EESSHHHHHHHHHH-HHC--CCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCc-----hhCCHHHHHHHHHH-HcC--CCCCCCCCC
Confidence            3455666666777777776     67777667777655 444  566666654

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.2e-10  Score=56.66  Aligned_cols=46  Identities=28%  Similarity=0.401  Sum_probs=30.7

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++..|.+  +++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~~H~~--~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGK-----AFIQNTSLIRHWRYYHTG--EKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCC-----CBSSHHHHHHHHTTTTTT--SCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCc-----hhCChHHHHHHhHhhcCC--CCCCCCCCC
Confidence            4566677777777777777     677777777776523555  666777655

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.4e-10  Score=55.83  Aligned_cols=44  Identities=25%  Similarity=0.394  Sum_probs=28.3

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV   59 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~   59 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~   45 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGK-----AFRQNIHLASHLRI-HTG--EKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCC-----EESSHHHHHHHHHH-HCC--CCSSCSSC
T ss_pred             CCCCCCCCCCCEECCcCCc-----hhCCHHHHHHHHHH-hCC--CCCCCCCC
Confidence            4556666667777777776     67777777777655 444  56666654

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=3.5e-10  Score=55.50  Aligned_cols=38  Identities=34%  Similarity=0.677  Sum_probs=20.1

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCG   89 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~   89 (139)
                      +++|.|+.|++.|.....|..|++.|+++++|.|+.||
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            8 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            44555555555555555555555555555555555543

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.00  E-value=2.6e-10  Score=56.81  Aligned_cols=38  Identities=24%  Similarity=0.458  Sum_probs=18.8

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCG   89 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~   89 (139)
                      +++|.|.+|++.|.....|..|++.|+++++|.|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            34445555555555555555555555545555555444

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=6e-10  Score=54.89  Aligned_cols=43  Identities=30%  Similarity=0.408  Sum_probs=29.4

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGK-----AFKTKSSLICHRRS-HTG--EKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCC-----EESSHHHHHHHHHH-HSS--SSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCC-----ccCCHHHHHHHHHh-cCC--CCCCCCC
Confidence            4566677777777777777     67777777777655 555  6667665

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.96  E-value=1.6e-10  Score=60.87  Aligned_cols=51  Identities=22%  Similarity=0.443  Sum_probs=32.2

Q ss_pred             CceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCCh
Q psy7353           6 LNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRP   67 (139)
Q Consensus         6 l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~   67 (139)
                      |..|+++|.+++||.|+.|++     .|.....|.   + .|.+  +++|.|+.|++.|...
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k-----~F~~~~~l~---~-~H~~--~k~~~C~~C~k~f~~~   52 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSS-----TFTDLEANQ---L-FDPM--TGTFRCTFCHTEVEED   52 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCC-----EEEHHHHHH---H-EETT--TTEEBCSSSCCBCEEC
T ss_pred             hhhHHHHcCCCCCccCCCCCc-----hhccHHHhH---h-hcCC--CCCEECCCCCCccccC
Confidence            455666677777777777777     676666554   2 2555  5666676666665544

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=7.9e-10  Score=54.43  Aligned_cols=43  Identities=28%  Similarity=0.416  Sum_probs=31.0

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGK-----AFIQKSTLSMHQRI-HRG--EKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCC-----EESSHHHHHHHHGG-GCS--CCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCc-----ccCCHHHHHHHHhH-hCC--CCCCCCC
Confidence            4666777777777777777     77777777777665 555  6677765

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=7.6e-10  Score=54.48  Aligned_cols=44  Identities=25%  Similarity=0.375  Sum_probs=31.5

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV   59 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~   59 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGK-----AFSQTSKLARHQRV-HTG--EKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCC-----CCSSHHHHHHHGGG-GCC--CCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCc-----ccCCHHHHHHHHHH-cCC--CCCCCCCC
Confidence            4666777777777877877     77777777777755 555  66777753

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=7.7e-10  Score=54.47  Aligned_cols=44  Identities=23%  Similarity=0.343  Sum_probs=31.2

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV   59 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~   59 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGK-----VFTHKTNLIIHQKI-HTG--ERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCC-----BCSSHHHHHHHHTT-TSC--CCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCc-----ccCCHHHHHHHHHH-hCC--CCCCCCCC
Confidence            4666777777777777777     77777777777665 555  66777653

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=7.2e-10  Score=54.60  Aligned_cols=44  Identities=27%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV   59 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~   59 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGK-----AFARKSTLIMHQRI-HTG--EKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCC-----EESSHHHHHHHHTT-TSC--CCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCc-----ccCCHHHHHHHHHH-hCC--CCCCCCCC
Confidence            4666777777777777777     77777777777655 555  66776653

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=8.5e-10  Score=54.28  Aligned_cols=43  Identities=30%  Similarity=0.417  Sum_probs=28.4

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGK-----AFRARSSLAIHQAT-HSG--EKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCC-----EESSHHHHHHHHHH-HCC--CSCSCTT
T ss_pred             CccCCCCCCCCeeccccCC-----hhcCHHHHHHHHHH-cCC--CCCCCCC
Confidence            4556666677777777777     67777777777655 555  5666665

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=9.8e-10  Score=54.09  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=29.1

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV   59 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~   59 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSK-----AFTQKAHLAQHQKT-HTG--EKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCC-----EESSHHHHHHHHHH-HCC--CCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCc-----ccCCHHHHHHHHHH-hCC--CCCCCCCC
Confidence            4556666777777777777     67777777777655 555  56666653

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1e-09  Score=54.07  Aligned_cols=43  Identities=28%  Similarity=0.423  Sum_probs=28.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKK-----TFTQSSSLTVHQRI-HTG--EKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCC-----BCSSHHHHHHHHHH-HTS--SCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCc-----ccCCHHHHHHHHHH-cCC--CCCCCCC
Confidence            4556666777777777777     67777777777655 555  5666665

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=6.7e-10  Score=54.66  Aligned_cols=43  Identities=28%  Similarity=0.409  Sum_probs=28.5

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGK-----AFIHDSQLQEHQRI-HTG--EKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCC-----EESSHHHHHHHHHH-HHS--CCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCC-----CcCCHHHHHHHHHh-cCC--CCCCCCC
Confidence            4556666777777777777     67777777777655 444  5666665

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.94  E-value=1e-09  Score=58.36  Aligned_cols=40  Identities=20%  Similarity=0.381  Sum_probs=32.2

Q ss_pred             hcCCCcccCCC--CCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          77 GCQRKVFPCPV--CGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        77 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      .++++||.|..  |+++|...++|.+|++..|.+++||.|.+
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            56788999964  99999999999999743388899988864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=8.7e-10  Score=54.26  Aligned_cols=44  Identities=30%  Similarity=0.399  Sum_probs=29.8

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV   59 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~   59 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGK-----VFTQNSHLVRHRGI-HTG--EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCC-----BCSSHHHHHHHHTT-TTT--SSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCc-----ccCCHHHHHHHHHh-hCC--CCCCCCCC
Confidence            4566677777777777777     67777777777654 555  66676653

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=9.3e-10  Score=54.13  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=29.8

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV   59 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~   59 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQK-----AFNTKSNLIVHQRT-HTG--EKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCC-----EESSHHHHHHHHHT-SCS--SSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCc-----ccCCHHHHHHHHHH-hCC--CCCCCCCC
Confidence            4566677777777777777     77777777777655 555  66666653

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=9.1e-10  Score=54.20  Aligned_cols=43  Identities=28%  Similarity=0.369  Sum_probs=26.4

Q ss_pred             eeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353          10 RYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus        10 ~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      +++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         4 ~~~h~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHK-----SFRYGSSLTVHQRI-HTG--EKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCC-----EESSHHHHHHHHTT-TSS--SCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCc-----ccCChHHHHHHHHH-hCC--CCCCCCCCC
Confidence            44566666666666666     66666666666554 444  556666554

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=6.7e-10  Score=54.13  Aligned_cols=43  Identities=26%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGK-----VFSRKDQLVSHQKT-HSG--QSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTE-----ECSSHHHHHHHHTT-SSS--SCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCC-----ccCCHHHHHHHHHH-cCC--CCCCCCC
Confidence            5667777788888888887     78888888888765 655  6677663

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.93  E-value=9.1e-10  Score=54.22  Aligned_cols=43  Identities=23%  Similarity=0.364  Sum_probs=27.8

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGK-----SFSISSQLATHQRI-HTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSC-----EESSHHHHHHHHHH-HTT--SCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCc-----ccCCHHHHHHHHHH-hCC--CCCCCCC
Confidence            3555666667777777776     67777777777655 554  5666665

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1e-09  Score=53.99  Aligned_cols=44  Identities=30%  Similarity=0.403  Sum_probs=30.9

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPV   59 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~   59 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGK-----SFIQKSHLNRHRRI-HTG--EKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCC-----EESSHHHHHHHGGG-TSS--CCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCCh-----hhCChHHHHHHHHh-cCC--CCCcCCCC
Confidence            4566677777777777777     77777777777655 555  66777653

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.1e-09  Score=53.97  Aligned_cols=43  Identities=23%  Similarity=0.368  Sum_probs=29.2

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGK-----RFTQNSHLHSHQRV-HTG--EKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCC-----CBSSHHHHHHHGGG-GTT--CCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCc-----ccCCHHHHHHHHHh-cCC--CCCCCCC
Confidence            4556667777777777777     67777777777655 555  5666665

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.1e-09  Score=53.90  Aligned_cols=43  Identities=28%  Similarity=0.458  Sum_probs=29.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGK-----AFRAHSNLTTHQVI-HTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTC-----CCSSHHHHHHHHTT-TCC--SCCSSCC
T ss_pred             CcccccCCCCCeECCcCCh-----hhCCHHHHHHHHHH-hCC--CCCCCCC
Confidence            4566677777777777777     77777777777654 555  6667665

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=9.5e-10  Score=54.13  Aligned_cols=43  Identities=30%  Similarity=0.426  Sum_probs=29.8

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGK-----VFTQNSHLARHRGI-HTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCC-----CCSSHHHHHHHHTT-TSC--SCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCc-----ccCChhHHHHHhHh-cCC--CCCCCCC
Confidence            4566677777777777777     77777777777655 555  6677665

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.2e-09  Score=53.67  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=29.1

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGK-----SFIKKSQLHVHQRI-HTG--ENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCC-----CCSSHHHHHHHHGG-GSS--SCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCc-----hhCCHHHHHHHHHH-hCC--CCCCCCC
Confidence            3556667777777777777     67777777777655 555  5666665

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=1.3e-11  Score=67.68  Aligned_cols=50  Identities=26%  Similarity=0.485  Sum_probs=26.8

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      .+++.|+.|+..|. ...|..|. .+.+++++.|..|++.|. ...|..|+++
T Consensus        15 ~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~   64 (75)
T 2d9k_A           15 LRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEV   64 (75)
T ss_dssp             CCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHH
T ss_pred             CcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHH
Confidence            45555555555552 55555555 455555555555555544 3555555554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=9.9e-10  Score=54.09  Aligned_cols=43  Identities=26%  Similarity=0.386  Sum_probs=27.0

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGK-----AFTRKSGLHIHQQS-HTG--ERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCC-----EESSHHHHHHHHHH-HTC--CCBTTTB
T ss_pred             CcccccCCCCCEECcccCC-----ccCCHhHHHHHHHH-cCC--CCCCCCC
Confidence            4555666666666666666     66666666666654 444  5566554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.1e-09  Score=53.81  Aligned_cols=43  Identities=28%  Similarity=0.433  Sum_probs=29.7

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGK-----AFAQKANLTQHQRI-HTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCC-----EESSHHHHHHHHTT-TSS--CCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCC-----ccCCHHHHHHHHHH-cCC--CCCCCCC
Confidence            4566677777777777777     77777777777655 555  6667665

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.90  E-value=1.5e-09  Score=52.25  Aligned_cols=40  Identities=30%  Similarity=0.458  Sum_probs=22.4

Q ss_pred             eeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353          10 RYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus        10 ~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      +++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         2 ~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C   41 (42)
T 2el5_A            2 SSGSSGENPYECSECGK-----AFNRKDQLISHQRT-HAG--ESGPSS   41 (42)
T ss_dssp             CSSSSSCCSEECSSSCC-----EESSHHHHHHHHGG-GCC--CCSCCC
T ss_pred             CCCCCCCCCccCCCcCh-----hhCCHHHHHHHHHh-cCC--CCCCCC
Confidence            34555556666666665     56666666666544 444  455554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.4e-09  Score=53.48  Aligned_cols=43  Identities=28%  Similarity=0.390  Sum_probs=28.7

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGK-----EFSQSSHLQTHQRV-HTG--EKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCC-----BCSSHHHHHHHHTT-TSS--SCCCCTT
T ss_pred             CCccccCCCCCeECCCCCc-----ccCCHHHHHHHHHH-cCC--CCCCCCC
Confidence            3555666777777777777     67777777777654 555  5666665

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.90  E-value=1.2e-09  Score=51.81  Aligned_cols=37  Identities=19%  Similarity=0.441  Sum_probs=26.6

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCC
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATT  114 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C  114 (139)
                      |+++++|.|..|++.|...+.|..|+++ |.+++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNV-HRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHT-TCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHH-cCCCcccee
Confidence            3466777777777777777777777776 677777754

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.5e-09  Score=52.90  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C   43 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQA-----TFNLRKHLIQHQKT-HAA--KSGPSS   43 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCC-----EESCHHHHHHHGGG-GCC--CCCTTC
T ss_pred             CcccccCCCCCeECCCCCC-----ccCCHHHHHHHHHH-cCC--CCCcCC
Confidence            4566677777777777777     77777777777655 555  566665

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.9e-09  Score=53.05  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=28.1

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRK-----TFIQIGHLNQHKRV-HTG--ERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCC-----CCSSHHHHHHHHHH-CSS--CCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCc-----hhCCHHHHHHHHHH-hCC--CCCCCCC
Confidence            3556666667777777776     67777777777655 555  5666664

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.3e-09  Score=53.70  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=28.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGK-----AFVLSAHLNQHLRV-HTQ--ETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTE-----EESSHHHHHHHHHH-HSS--CCSSSCC
T ss_pred             CccccCCCCCCeECcccCh-----hhCCHHHHHHHHHH-hCC--CCCCCCC
Confidence            4556666777777777777     67777777777655 544  5666665

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.1e-09  Score=52.28  Aligned_cols=42  Identities=26%  Similarity=0.372  Sum_probs=26.9

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C   43 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQK-----AFNTKSNLMVHQRT-HTG--ESGPSS   43 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCC-----EESCHHHHHHHHHH-TTT--SSCSCC
T ss_pred             CCccCCCCCCCeECCCCCc-----ccCCHhHHHHHHHH-hCC--CCCCCC
Confidence            3555666667777777776     67777777777654 555  556655

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.6e-09  Score=52.75  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=28.0

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C   43 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGK-----AFRSKSYLIIHTRT-HTG--ESGPSS   43 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCC-----CCSSHHHHHHHHTT-TCC--SSSSCC
T ss_pred             CCCcCCCCCcCeECCCCCC-----ccCCHHHHHHHhhh-cCC--CCCCCC
Confidence            4556667777777777777     67777777777654 555  566665

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2.4e-09  Score=51.50  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=22.2

Q ss_pred             eeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353          10 RYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus        10 ~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      +++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         2 ~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C   41 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKE-----TFSDNNRLVQHQKM-HTV--KSGPSS   41 (42)
T ss_dssp             CSSSCSCCSCBCTTTCC-----BCSSHHHHHHHHHH-TSC--CSSCCC
T ss_pred             CcCcCCCCCeECCCCCC-----ccCCHHHHHHHHHH-hCC--CCCCCC
Confidence            34455556666666665     56666666666544 444  455544

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.1e-09  Score=53.89  Aligned_cols=43  Identities=26%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGK-----GFGRRSHLAGHLRL-HSR--EKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCC-----CCSSHHHHHHHHHH-HHH--TTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCc-----ccCCHHHHHHHHHH-hCC--CCCCCCC
Confidence            4566667777777777777     67777777777665 444  5666665

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.3e-09  Score=53.63  Aligned_cols=43  Identities=23%  Similarity=0.362  Sum_probs=28.5

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGK-----AFRVSSHLVQHHSV-HSG--ERPSGPS   44 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCC-----BCSSHHHHHHHTTT-TTS--CCSCTTS
T ss_pred             CCCCCCCCCcccCCCCCCc-----ccCcHHHHHHHHHh-cCC--CCCCCCC
Confidence            3555666777777777777     67777777777654 555  5666665

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=2.1e-09  Score=52.87  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=29.6

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~h~~~h~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRK-----AFSHHASLTQHQRV-HSG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCC-----BCSSSHHHHHHGGG-SCC--SCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCc-----hhCCHHHHHHHHHH-hCC--CCCCCCC
Confidence            3556677777777777777     77777777777655 555  6677665

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.87  E-value=7.5e-10  Score=56.52  Aligned_cols=49  Identities=12%  Similarity=0.204  Sum_probs=36.5

Q ss_pred             ccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcc
Q psy7353          32 TFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVF   83 (139)
Q Consensus        32 ~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (139)
                      .|.+...|..|++. |.+  +++|.|..|++.|...+.|..|+..|++++||
T Consensus         5 ~~~~~~~l~~h~~~-H~~--~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            5 RAKHPPGTEKPRSR-SQS--EQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCSCSSCCCCCHHH-HTS--SCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccCCCcchhhHHHh-cCC--CCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            56666677777665 555  67788888888888888888888888777765

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=2e-09  Score=52.43  Aligned_cols=42  Identities=17%  Similarity=0.315  Sum_probs=26.1

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      +|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C   43 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDR-----VFTQRNYLVQHERT-HAR--KSGPSS   43 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSC-----EESSSHHHHHHHHH-CCC--CCSSCC
T ss_pred             CCccccCCCCCeECCCCCc-----hhCCHHHHHHHhHh-cCC--CCCCCC
Confidence            3555666666666666666     66666666666654 544  555555

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.9e-09  Score=51.91  Aligned_cols=41  Identities=29%  Similarity=0.362  Sum_probs=29.2

Q ss_pred             eeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353           9 FRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus         9 ~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      |+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGK-----AFSQKGSLIVHIRV-HTG--SGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTC-----CBSSHHHHHTTGGG-TSC--CSCCCC
T ss_pred             CccccCCCCCeeCCCccc-----hhCCHHHHHHHHHH-hCC--CCCCCC
Confidence            556677777777877877     77777777777765 555  566655

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.2e-09  Score=53.85  Aligned_cols=42  Identities=26%  Similarity=0.426  Sum_probs=22.1

Q ss_pred             eccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353          11 YASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus        11 ~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      ++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGK-----SFSGSYRLTQHWIT-HTR--EKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCC-----CCSSHHHHHHHHTH-HHH--CCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCc-----ccCCHHHHHHHHHH-cCC--CCCCCCCCC
Confidence            3455555555555555     55555555555544 333  455555544

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=2.2e-09  Score=52.71  Aligned_cols=43  Identities=26%  Similarity=0.418  Sum_probs=30.1

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGK-----AFSVRSSLTTHQAI-HTG--KKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTE-----ECSSHHHHHHHHTT-SCC--CCCCCSC
T ss_pred             CcccCCCCCCCeECCCCCh-----hhCCHHHHHHHHHH-hCC--CCCCCCC
Confidence            3566677777777777777     77777777777655 555  6677665

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.83  E-value=3.8e-09  Score=50.78  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=22.6

Q ss_pred             eeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353          10 RYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus        10 ~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      +++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         3 ~~~H~~~~~~~C~~C~k-----~f~~~~~l~~H~~~-H~~--~k~~~C   42 (42)
T 2epc_A            3 SGSSGGETPYLCGQCGK-----SFTQRGSLAVHQRS-CSQ--SGPSSG   42 (42)
T ss_dssp             CSCCCSSCCEECSSSCC-----EESSHHHHHHHHHH-TTC--CCCCCC
T ss_pred             CccCCCCCCeECCCCCc-----ccCCHHHHHHHhhh-cCC--CCCCCC
Confidence            44555566666666666     56666666666544 444  455544

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=6.1e-09  Score=50.46  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=18.7

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCP   86 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (139)
                      +++|.|..|++.|.....|..|++.|+++++|.|.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            44555555555555555555555555555555543

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4.7e-09  Score=51.09  Aligned_cols=42  Identities=26%  Similarity=0.267  Sum_probs=28.9

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGK-----AFIWKSLLIVHERT-HAG--VSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCC-----EESSHHHHHHHHGG-GSS--CSCCCC
T ss_pred             CCCcccCCCcCeECCCCCc-----ccCchHHHHHHHhH-hcC--CCCCCC
Confidence            4666777777777777777     77777777777655 555  566554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.9e-09  Score=51.26  Aligned_cols=41  Identities=24%  Similarity=0.362  Sum_probs=25.4

Q ss_pred             eeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353           9 FRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus         9 ~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      |+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGA-----RFVQVAHLRAHVLI-HTG--SGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCC-----EESSHHHHHHHTHH-HHS--CCSSCC
T ss_pred             CCcccCCCCCEeCCCcCh-----hhCCHHHHHHHHHH-cCC--CCCCCC
Confidence            445566666677777776     66666666666654 444  555544

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.80  E-value=1.1e-09  Score=51.27  Aligned_cols=30  Identities=17%  Similarity=0.267  Sum_probs=14.8

Q ss_pred             cCCCCCCCCCCCCCCCCCCcchhccccccc
Q psy7353         106 HDCFMPATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus       106 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      |.+++||.|+.|++.|.....|..|++.|.
T Consensus         6 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            6 STGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            444455555555555555555555544443

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=2.2e-09  Score=52.83  Aligned_cols=34  Identities=29%  Similarity=0.496  Sum_probs=16.2

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcC-CCcccC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQ-RKVFPC   85 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~-~~~~~C   85 (139)
                      +++|.|+.|++.|.....|..|++.|++ +++|.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C   44 (46)
T 2eoy_A           10 EKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPS   44 (46)
T ss_dssp             SCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSS
T ss_pred             CCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCC
Confidence            3444444444444444444444444444 444444

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=6.1e-09  Score=50.64  Aligned_cols=41  Identities=22%  Similarity=0.371  Sum_probs=23.0

Q ss_pred             eeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353           9 FRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus         9 ~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      |+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         3 h~~~h~~~~~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C   43 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGK-----IFRHSSLLIEHQAL-HAG--ESGPSS   43 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCC-----CCSSHHHHHHHHHH-HTT--SCCCCC
T ss_pred             CCCCCCCCcCeECCCCCc-----ccCCHHHHHHHHHH-HCC--CCCCCC
Confidence            344555556666666666     56666666666544 444  455554

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.3e-09  Score=52.70  Aligned_cols=43  Identities=21%  Similarity=0.240  Sum_probs=25.2

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGM-----NFSWSCSLFKHLRS-HER--TDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCC-----EESSSHHHHHHHHH-HHH--SCCSSCS
T ss_pred             ccccccCCCCCeeCcccCh-----hhCCHHHHHHHHHH-hCC--CCCCCCC
Confidence            3555566666666666666     66666666666554 443  4555553

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=3e-09  Score=51.74  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=28.7

Q ss_pred             eeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353           8 LFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus         8 ~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      .|+++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGK-----AFTRIFHLTRHQKI-HTR--KSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTE-----EESSSHHHHTTHHH-HCC--CCCCSC
T ss_pred             CCCcCCCCCCCeECcccCc-----ccCCHHHHHHHHHH-hCC--CCCCCC
Confidence            4566677777777777777     77777777777665 555  566665

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=6.8e-09  Score=51.37  Aligned_cols=44  Identities=20%  Similarity=0.242  Sum_probs=26.1

Q ss_pred             eeeccCCCcceecC--CCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCC
Q psy7353           9 FRYASVTEGIYKCM--ECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVC   60 (139)
Q Consensus         9 ~~~~~~~~~~~~C~--~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C   60 (139)
                      |.++|.++++|.|.  .|++     .|.....|..|++. |.+  +++|.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k-----~f~~~~~L~~H~~~-H~~--~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGW-----RFSRSDELSRHRRS-HSG--VKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCC-----EESSHHHHHHHHTT-SCC--CCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCC-----ccCCHHHHHHHHHH-hCC--CCCCCCCCC
Confidence            34455666666665  5666     66666666666554 544  556666554

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=3.7e-09  Score=50.91  Aligned_cols=40  Identities=23%  Similarity=0.350  Sum_probs=21.3

Q ss_pred             eeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeec
Q psy7353          10 RYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPC   57 (139)
Q Consensus        10 ~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c   57 (139)
                      +++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|
T Consensus         3 ~~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~-H~~--~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGT-----RFRHLQTLKSHLRI-HTG--SGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCCSSSCC-----CBSSHHHHHHHTTT-TSC--CSSTTC
T ss_pred             CcccCCCCCEECCCCCC-----ccCCHHHHHHHHHh-cCC--CCCCCC
Confidence            44455555566666665     56555555555543 444  444433

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=5.3e-09  Score=51.12  Aligned_cols=41  Identities=24%  Similarity=0.513  Sum_probs=25.3

Q ss_pred             eeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353          10 RYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus        10 ~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      .++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|+
T Consensus         4 ~~~h~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~   44 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGK-----SFRAKGNLVTHQRI-HTG--EKSGPSS   44 (45)
T ss_dssp             CCCCCSCCSEEETTTTE-----EESSHHHHHHHHTT-TSS--CCCCCSC
T ss_pred             CCCCCCCcCccCCCCCC-----ccCChHHHHHHHHH-hCC--CCCCCCC
Confidence            44556666666666666     66666666666554 544  5566654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=7.7e-09  Score=49.45  Aligned_cols=29  Identities=34%  Similarity=0.706  Sum_probs=14.8

Q ss_pred             ccCCCcceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          12 ASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        12 ~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      +|.++++|.|+.|++     .|.....|..|++.
T Consensus         4 ~h~~~k~~~C~~C~k-----~f~~~~~L~~H~~~   32 (41)
T 2ept_A            4 GSSGQRVYECQECGK-----SFRQKGSLTLHERI   32 (41)
T ss_dssp             SCCCCCCEECSSSCC-----EESSHHHHHHHGGG
T ss_pred             ccCCCCCeECCCCCC-----CcCCHHHHHHHHHH
Confidence            344455555555555     55555555555443

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=1.6e-09  Score=61.12  Aligned_cols=49  Identities=10%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +++|.|+.|++.|.....|..|++.|++++||.|..|.    ....|..|.++
T Consensus        23 ~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~   71 (88)
T 1x6f_A           23 NSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKY   71 (88)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCC
T ss_pred             CCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhcc
Confidence            56666666666666666666666666666666665443    33444555555

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=2.3e-09  Score=50.10  Aligned_cols=34  Identities=35%  Similarity=0.732  Sum_probs=21.9

Q ss_pred             HhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCC
Q psy7353          76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFM  110 (139)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (139)
                      .|+++++|.|..|++.|.....|..|+++ |.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~-h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKT-NHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHH-HCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHH-HcCCC
Confidence            35566667777777777777777777666 45444

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=9.8e-09  Score=50.41  Aligned_cols=40  Identities=25%  Similarity=0.367  Sum_probs=19.9

Q ss_pred             eccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecC
Q psy7353          11 YASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCP   58 (139)
Q Consensus        11 ~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~   58 (139)
                      ++|.++++|.|+.|++     .|.....|..|++. |.+  +++|.|.
T Consensus         5 ~~h~~~k~~~C~~C~k-----~F~~~~~L~~H~~~-H~~--~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRCSDCGK-----FFLQASNFIQHRRI-HTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCCSSSCC-----CCSSHHHHHHHHHH-HSS--CCCSSCC
T ss_pred             CCCCCCCCcCCCCCCC-----eeCChHHHHHHHHH-hCC--CCCCCCC
Confidence            3444555555555555     55555555555443 333  4455443

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.73  E-value=1e-08  Score=46.75  Aligned_cols=32  Identities=31%  Similarity=0.690  Sum_probs=23.0

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCCCCCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPAT  113 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  113 (139)
                      +||.|..|++.|...+.|..|+++ |.+++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL-HELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH-HTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH-hCCCCCCC
Confidence            367777777777777777777776 66777664

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.73  E-value=4.3e-09  Score=49.14  Aligned_cols=35  Identities=34%  Similarity=0.610  Sum_probs=27.9

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDC  108 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (139)
                      |++.|++++||.|..|++.|.....|..|+++ |.+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR-HML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG-GTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH-hcc
Confidence            45567888888888888888888888888887 544

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.72  E-value=8.6e-09  Score=47.45  Aligned_cols=33  Identities=21%  Similarity=0.524  Sum_probs=21.9

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhhhcCCCC
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFM  110 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (139)
                      |+++++|.|..|++.|.....|..|+++ |.+++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKV-HTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG-GTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHH-cCCCC
Confidence            4566677777777777777777777766 55544

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.72  E-value=7.6e-09  Score=47.57  Aligned_cols=33  Identities=15%  Similarity=0.410  Sum_probs=21.2

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhhhcCCCC
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFM  110 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (139)
                      |+++++|.|..|++.|...+.|..|+++ |.+++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIRE-VHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHH-TSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHH-HcCCC
Confidence            4556666777777777777777777666 45444

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1e-08  Score=55.95  Aligned_cols=68  Identities=15%  Similarity=0.257  Sum_probs=57.9

Q ss_pred             cccCceeeeccCCCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCC
Q psy7353           3 VRGLNLFRYASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRK   81 (139)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~   81 (139)
                      ...|..|+..+.+.+++.|..|++     .| ....|+.|. . +-+  .+++.|+.|++.+. ...|..|+..+.++.
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~-----~~-~~~~L~~H~-~-~c~--~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDL-----EL-SILKLKEHE-D-YCG--ARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCC-----EE-CHHHHHHHH-H-HHH--HCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             chHHHhhCcccCCCcccCCcccCh-----Hh-hHHHHHHHH-h-HcC--CCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            467889998999999999999999     78 488899998 4 555  78999999999877 588999999887654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.68  E-value=1.8e-09  Score=60.86  Aligned_cols=57  Identities=11%  Similarity=0.229  Sum_probs=46.6

Q ss_pred             HHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhccccccc
Q psy7353          74 MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      ...|+++++|.|..|++.|.....|..|+++ |.+++||.|..|..    +..|..|.+.+.
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~-Ht~ekp~~C~~~~~----~~~~~~~~~~~~   73 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNI-HNEEFQKRAKRQER----RKQLLSKQKYAD   73 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHH-HHHHHHHHCCCCSC----CCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHH-hCCCCCcccchhhh----HHHHHhhhcccc
Confidence            3467889999999999999999999999998 78899999987654    445556665554

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.61  E-value=1.2e-08  Score=47.67  Aligned_cols=25  Identities=32%  Similarity=0.675  Sum_probs=17.6

Q ss_pred             cCCCcccCCCCCccCCChhHHHhhh
Q psy7353          78 CQRKVFPCPVCGKEFSRPDKMKNHM  102 (139)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~  102 (139)
                      .+++||.|..|++.|.+.++|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4566777777777777777777776

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=4.2e-09  Score=49.83  Aligned_cols=31  Identities=26%  Similarity=0.603  Sum_probs=19.8

Q ss_pred             hcCCCcccCCC--CCccCCChhHHHhhhhhhcCC
Q psy7353          77 GCQRKVFPCPV--CGKEFSRPDKMKNHMKTVHDC  108 (139)
Q Consensus        77 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  108 (139)
                      +++++||.|..  |++.|...+.|.+|+++ |.+
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~-Htg   36 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKV-HTA   36 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHH-HSC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh-cCC
Confidence            45566677754  77777777777777666 443

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.60  E-value=4.7e-08  Score=46.09  Aligned_cols=33  Identities=18%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCccc
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFP   84 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~   84 (139)
                      +++|.|..|++.|...+.|..|++.|+++++|.
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            455666666666666666666666666666554

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.58  E-value=1.9e-08  Score=47.13  Aligned_cols=34  Identities=26%  Similarity=0.586  Sum_probs=22.5

Q ss_pred             cCCCcccCC--CCCccCCChhHHHhhhhhhcCCCCCC
Q psy7353          78 CQRKVFPCP--VCGKEFSRPDKMKNHMKTVHDCFMPA  112 (139)
Q Consensus        78 ~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (139)
                      +++++|.|.  .|++.|...+.|..|+++ |.+++||
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHK-HEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHH-HHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            456667776  477777777777777766 5556655

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=5.1e-08  Score=45.04  Aligned_cols=28  Identities=29%  Similarity=0.604  Sum_probs=17.6

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |.++++|.|..|++.|.....|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHH
Confidence            4555666666666666666666666665

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=5.9e-08  Score=44.84  Aligned_cols=31  Identities=23%  Similarity=0.557  Sum_probs=19.5

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhhhcCC
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDC  108 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (139)
                      |+++++|.|..|++.|.....|..|+++ |.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~   34 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLV-HGD   34 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTT-TST
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHH-hcC
Confidence            4556666666666666666666666665 443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=6.6e-08  Score=44.60  Aligned_cols=28  Identities=32%  Similarity=0.669  Sum_probs=16.2

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +.++++|.|..|++.|.....|..|+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHH
Confidence            3445556666666666666666666555

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=4.7e-08  Score=45.09  Aligned_cols=28  Identities=21%  Similarity=0.572  Sum_probs=16.8

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |.++++|.|..|++.|.....|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            4455566666666666666666666655

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=2.1e-08  Score=46.81  Aligned_cols=28  Identities=18%  Similarity=0.469  Sum_probs=16.5

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhh-hhh
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNH-MKT  104 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H-~~~  104 (139)
                      |++++||.|..|++.|...+.|..| +++
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~   32 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQK   32 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHH
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHH
Confidence            4555566666666666666666666 444

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=5.9e-08  Score=45.80  Aligned_cols=31  Identities=6%  Similarity=-0.090  Sum_probs=16.4

Q ss_pred             CCCCCCCCCC--CCCCCCCCcchhcccccccCc
Q psy7353         107 DCFMPATTPQ--GQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus       107 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      .+++||.|++  |++.|.....|..|++.|.+.
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            4455555543  555555555555555555443

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.52  E-value=1.2e-07  Score=43.01  Aligned_cols=30  Identities=30%  Similarity=0.536  Sum_probs=20.4

Q ss_pred             eeecCCCCCcCCChHHHHHHHHHhcCCCcc
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMKTGCQRKVF   83 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (139)
                      ||.|+.|++.|...+.|..|+..|+++++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            566667777777777777777666666665

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.51  E-value=1.2e-08  Score=46.19  Aligned_cols=31  Identities=35%  Similarity=0.702  Sum_probs=23.6

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCCCCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPA  112 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (139)
                      +||.|..|++.|...+.|..|+++ |.+++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT-AFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS-SSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH-HccCCCC
Confidence            467788888888888888888877 6777765

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.50  E-value=5.7e-08  Score=48.16  Aligned_cols=32  Identities=22%  Similarity=0.515  Sum_probs=22.7

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhh-hhcCCC
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMK-TVHDCF  109 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~h~~~  109 (139)
                      |+++++|.|..|++.|.....|..|++ + |.++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~-H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHS-HLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHS-SCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhh-cCCC
Confidence            566777777777777777777777777 5 5544

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=3.7e-08  Score=45.83  Aligned_cols=28  Identities=21%  Similarity=0.618  Sum_probs=13.6

Q ss_pred             hcCCCcccCCCCCccCCCh-hHHHhhhhh
Q psy7353          77 GCQRKVFPCPVCGKEFSRP-DKMKNHMKT  104 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~-~~l~~H~~~  104 (139)
                      |+++++|.|..|++.|... +.|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHh
Confidence            3444445555555555554 455555444

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=9.8e-08  Score=44.05  Aligned_cols=28  Identities=29%  Similarity=0.727  Sum_probs=16.5

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +.++++|.|..|++.|.....|..|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHH
Confidence            3445556666666666666666666655

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=4.8e-08  Score=45.07  Aligned_cols=32  Identities=6%  Similarity=-0.140  Sum_probs=29.2

Q ss_pred             cCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353         106 HDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus       106 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      |.++++|.|++|++.|.....|..|++.|.++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            67889999999999999999999999988753

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=2.9e-08  Score=46.22  Aligned_cols=32  Identities=6%  Similarity=-0.248  Sum_probs=29.0

Q ss_pred             cCCCCCCCCCCCCCCCCCC-cchhcccccccCc
Q psy7353         106 HDCFMPATTPQGQRGQRAS-PVIDFHKDSVFNK  137 (139)
Q Consensus       106 h~~~~~~~C~~C~~~f~~~-~~l~~H~~~~~~~  137 (139)
                      |.+++||.|+.|++.|... ..|..|++.|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            7889999999999999999 9999999887653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=3e-08  Score=45.88  Aligned_cols=32  Identities=9%  Similarity=0.037  Sum_probs=29.2

Q ss_pred             cCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353         106 HDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus       106 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      |.+++||.|++|++.|.....|..|++.|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            78899999999999999999999999887653

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.41  E-value=3.5e-07  Score=41.69  Aligned_cols=28  Identities=25%  Similarity=0.380  Sum_probs=15.5

Q ss_pred             cCCCcceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          13 SVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        13 ~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      |.++++|.|+.|++     .|.+...|..|++.
T Consensus         2 h~~~k~~~C~~C~k-----~f~~~~~L~~H~~~   29 (35)
T 2elx_A            2 SSGSSGYVCALCLK-----KFVSSIRLRSHIRE   29 (35)
T ss_dssp             CCCCCSEECSSSCC-----EESSHHHHHHHHHH
T ss_pred             CCCCCCeECCCCcc-----hhCCHHHHHHHHHH
Confidence            34455555555555     55555555555544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=4.2e-08  Score=45.36  Aligned_cols=32  Identities=13%  Similarity=-0.166  Sum_probs=29.0

Q ss_pred             cCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353         106 HDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus       106 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      |.+++||.|+.|++.|.....|..|++.|.++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            67889999999999999999999999987653

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.39  E-value=4.8e-07  Score=48.14  Aligned_cols=36  Identities=11%  Similarity=0.111  Sum_probs=23.3

Q ss_pred             CceeecCC--CCCcCCChHHHHHHH-HHhcCCCcccCCC
Q psy7353          52 RKVFPCPV--CGKEFSRPDKMKNHM-KTGCQRKVFPCPV   87 (139)
Q Consensus        52 ~~~~~c~~--C~~~~~~~~~l~~h~-~~~~~~~~~~C~~   87 (139)
                      ++||.|..  |++.|...+.|..|+ ++|++++|+.|..
T Consensus        25 EKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           25 YRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             CCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            56666654  666666666666665 4666666666643

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.37  E-value=4.6e-07  Score=41.35  Aligned_cols=28  Identities=25%  Similarity=0.426  Sum_probs=16.6

Q ss_pred             cCCCcceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          13 SVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        13 ~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      |.++++|.|+.|++     .|.....|..|++.
T Consensus         2 H~~~k~~~C~~C~k-----~f~~~~~l~~H~~~   29 (35)
T 1srk_A            2 SSGKRPFVCRICLS-----AFTTKANCARHLKV   29 (35)
T ss_dssp             CSCCSCEECSSSCC-----EESSHHHHHHHHGG
T ss_pred             CCCCcCeeCCCCCc-----ccCCHHHHHHHHHH
Confidence            44556666666666     56666666666544

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.37  E-value=4.1e-08  Score=48.70  Aligned_cols=32  Identities=16%  Similarity=0.195  Sum_probs=28.7

Q ss_pred             cCCCCCCCCCCCCCCCCCCcchhcccc-cccCc
Q psy7353         106 HDCFMPATTPQGQRGQRASPVIDFHKD-SVFNK  137 (139)
Q Consensus       106 h~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~  137 (139)
                      |.+++||.|..|++.|.....|..|++ .|.++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            788999999999999999999999999 77654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.35  E-value=3.1e-07  Score=40.17  Aligned_cols=27  Identities=41%  Similarity=0.910  Sum_probs=17.0

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDC  108 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (139)
                      ++|.|..|++.|.....|..|+++ |.+
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~-h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLET-HDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHT-TCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH-hcc
Confidence            456666666666666666666665 443

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=4.7e-07  Score=41.85  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=18.4

Q ss_pred             ccCCCcceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          12 ASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        12 ~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      +|.++++|.|+.|++     .|.....|..|++.
T Consensus         3 ~h~~~k~~~C~~C~k-----~f~~~~~l~~H~~~   31 (37)
T 2elo_A            3 SGSSGRSYSCPVCEK-----SFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCCCCCCEETTTTE-----ECSSHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCC-----ccCCHHHHHHHHHH
Confidence            455666666666666     66666666666654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.29  E-value=5.5e-07  Score=39.06  Aligned_cols=23  Identities=35%  Similarity=0.925  Sum_probs=14.0

Q ss_pred             cccCCCCCccCCChhHHHhhhhh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +|.|..|++.|.....|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            45566666666666666666655

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.29  E-value=4e-07  Score=39.58  Aligned_cols=23  Identities=39%  Similarity=0.830  Sum_probs=13.3

Q ss_pred             cccCCCCCccCCChhHHHhhhhh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      ||.|..|++.|.....|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTG
T ss_pred             CccCCCCCchhCCHHHHHHHHHH
Confidence            45555555555555555555555

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.29  E-value=2.8e-07  Score=42.82  Aligned_cols=28  Identities=21%  Similarity=0.580  Sum_probs=15.6

Q ss_pred             hcCCCcccCC--CCCccCCChhHHHhhhhh
Q psy7353          77 GCQRKVFPCP--VCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        77 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~  104 (139)
                      ++++++|.|.  .|++.|...+.|..|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            3445555555  355556555556555555

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.28  E-value=8.4e-07  Score=39.56  Aligned_cols=24  Identities=29%  Similarity=0.690  Sum_probs=13.9

Q ss_pred             CcccCC--CCCccCCChhHHHhhhhh
Q psy7353          81 KVFPCP--VCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~--~C~~~f~~~~~l~~H~~~  104 (139)
                      +||.|.  .|++.|.....|..|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHH
Confidence            455555  566666666666666555

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.28  E-value=2.2e-07  Score=49.31  Aligned_cols=32  Identities=25%  Similarity=0.670  Sum_probs=28.3

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhhhcCCC
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCF  109 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (139)
                      +.+++||.|..|++.|.....|..|+++ |.++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~-Htg~   39 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQ-HGVT   39 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHH-HTTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhh-hCCC
Confidence            5678999999999999999999999999 5554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.27  E-value=2.2e-06  Score=45.36  Aligned_cols=31  Identities=23%  Similarity=0.668  Sum_probs=28.5

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCc
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKV   82 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~   82 (139)
                      +++|.|..|++.|.....|..|+++|+++..
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            7899999999999999999999999998653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.27  E-value=7.4e-07  Score=38.87  Aligned_cols=23  Identities=26%  Similarity=0.628  Sum_probs=13.4

Q ss_pred             cccCCCCCccCCChhHHHhhhhh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +|.|..|++.|...+.|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHH
Confidence            45555565555555555555555

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.26  E-value=9.7e-07  Score=41.05  Aligned_cols=32  Identities=28%  Similarity=0.530  Sum_probs=17.2

Q ss_pred             CceeecC--CCCCcCCChHHHHHHHHHhcCCCcc
Q psy7353          52 RKVFPCP--VCGKEFSRPDKMKNHMKTGCQRKVF   83 (139)
Q Consensus        52 ~~~~~c~--~C~~~~~~~~~l~~h~~~~~~~~~~   83 (139)
                      +++|.|.  .|++.|...+.|..|++.|+++++|
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4455555  3555555555555555555555543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.25  E-value=8.8e-07  Score=39.21  Aligned_cols=27  Identities=41%  Similarity=0.851  Sum_probs=17.2

Q ss_pred             cccCC--CCCccCCChhHHHhhhhhhcCCC
Q psy7353          82 VFPCP--VCGKEFSRPDKMKNHMKTVHDCF  109 (139)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~~h~~~  109 (139)
                      ||.|.  .|++.|...+.|..|+++ |.++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~-H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRT-HTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT-TSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHH-hcCC
Confidence            56665  667777776777777666 4443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.25  E-value=3.3e-07  Score=40.05  Aligned_cols=29  Identities=10%  Similarity=0.017  Sum_probs=26.0

Q ss_pred             CCCCCCCCCCCCCCCcchhcccccccCcC
Q psy7353         110 MPATTPQGQRGQRASPVIDFHKDSVFNKD  138 (139)
Q Consensus       110 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  138 (139)
                      +||.|++|++.|.....|..|++.|+++.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            47999999999999999999999988653

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.24  E-value=5.9e-08  Score=47.85  Aligned_cols=30  Identities=7%  Similarity=-0.185  Sum_probs=16.3

Q ss_pred             cCCCCCCCCC--CCCCCCCCCcchhccccccc
Q psy7353         106 HDCFMPATTP--QGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus       106 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~  135 (139)
                      |.+++||.|+  .|++.|.....|..|++.|.
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            4555555553  45555555555555555544

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.24  E-value=1.1e-07  Score=41.14  Aligned_cols=24  Identities=38%  Similarity=0.919  Sum_probs=17.3

Q ss_pred             CcccCCCCCccCCChhHHHhhhhh
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      ++|.|..|++.|.....|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHh
Confidence            567777777777777777777766

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.56  E-value=1.3e-07  Score=40.21  Aligned_cols=24  Identities=13%  Similarity=0.026  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCCCCCcchhcccccc
Q psy7353         111 PATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus       111 ~~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      ||.|++|++.|.....|..|++.|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            556666666666666666665543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.55  E-value=1.4e-07  Score=41.46  Aligned_cols=26  Identities=15%  Similarity=0.008  Sum_probs=13.3

Q ss_pred             CCCCCCCCCCCCCCCcchhccccccc
Q psy7353         110 MPATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus       110 ~~~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      +||.|+.|++.|.....|..|++.|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            34555555555555555555554443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.23  E-value=2.2e-07  Score=40.47  Aligned_cols=28  Identities=18%  Similarity=0.051  Sum_probs=25.4

Q ss_pred             CCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353         110 MPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus       110 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      +||.|+.|++.|.....|..|++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5899999999999999999999988753

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.23  E-value=1e-06  Score=38.52  Aligned_cols=26  Identities=31%  Similarity=0.767  Sum_probs=14.6

Q ss_pred             cccCCCCCccCCChhHHHhh-hhhhcCC
Q psy7353          82 VFPCPVCGKEFSRPDKMKNH-MKTVHDC  108 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H-~~~~h~~  108 (139)
                      +|.|..|++.|...+.|..| +++ |.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~-H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKI-HSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTT-SCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHH-ccC
Confidence            45566666666666666666 344 443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.22  E-value=5.1e-07  Score=40.31  Aligned_cols=29  Identities=17%  Similarity=-0.003  Sum_probs=26.1

Q ss_pred             CCCCCCC--CCCCCCCCCcchhcccccccCc
Q psy7353         109 FMPATTP--QGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus       109 ~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      ++||.|+  .|++.|.....|..|++.|.++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4789999  8999999999999999998753

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.22  E-value=3.7e-07  Score=39.55  Aligned_cols=23  Identities=35%  Similarity=0.813  Sum_probs=12.6

Q ss_pred             cccCCCCCccCCChhHHHhhhhh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      ||.|..|++.|.....|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH
Confidence            45555555555555555555554

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=1.6e-06  Score=39.64  Aligned_cols=29  Identities=21%  Similarity=0.306  Sum_probs=17.6

Q ss_pred             ccCCCcceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          12 ASVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        12 ~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      +|.++++|.|+.|++     .|.....|..|++.
T Consensus         3 ~h~~~k~~~C~~C~k-----~f~~~~~l~~H~~~   31 (36)
T 2elt_A            3 SGSSGKPYKCPQCSY-----ASAIKANLNVHLRK   31 (36)
T ss_dssp             CSCCCCSEECSSSSC-----EESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCc-----ccCCHHHHHHHHHH
Confidence            345556666666666     66666666666554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.21  E-value=8.6e-07  Score=38.17  Aligned_cols=25  Identities=8%  Similarity=-0.005  Sum_probs=13.7

Q ss_pred             CCCCCCCCCCCCCCCcchhcccccc
Q psy7353         110 MPATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus       110 ~~~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      +||.|+.|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhc
Confidence            4555555555555555555555544

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.21  E-value=1.1e-07  Score=40.89  Aligned_cols=24  Identities=29%  Similarity=0.646  Sum_probs=17.7

Q ss_pred             CcccCCCCCccCCChhHHHhhhhh
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +||.|..|++.|...+.|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHHH
Confidence            567777777777777777777765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.21  E-value=8.2e-07  Score=37.98  Aligned_cols=23  Identities=26%  Similarity=0.628  Sum_probs=11.4

Q ss_pred             eeecCCCCCcCCChHHHHHHHHH
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMKT   76 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~~   76 (139)
                      +|.|+.|++.|.....|..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHHH
Confidence            44455555555555555555443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.20  E-value=6.5e-07  Score=38.73  Aligned_cols=27  Identities=7%  Similarity=0.017  Sum_probs=17.1

Q ss_pred             CCCCCCCCCCCCCCCcchhcccccccC
Q psy7353         110 MPATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus       110 ~~~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      +||.|+.|++.|.....|..|++.|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            356666666666666666666665543

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.51  E-value=1.8e-07  Score=40.81  Aligned_cols=25  Identities=8%  Similarity=-0.008  Sum_probs=12.3

Q ss_pred             CCCCCCCCCCCCCCcchhccccccc
Q psy7353         111 PATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus       111 ~~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      ||.|+.|++.|.....|..|++.|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            4445555555555555555544443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.20  E-value=1.3e-06  Score=37.18  Aligned_cols=23  Identities=17%  Similarity=0.679  Sum_probs=14.1

Q ss_pred             cccCCCCCccCCChhHHHhhhhh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      ||.|..|++.|.....|..|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CccCCCCCCcCCCHHHHHHHHHH
Confidence            35566666666666666666665

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=1.5e-06  Score=40.23  Aligned_cols=32  Identities=22%  Similarity=0.425  Sum_probs=22.5

Q ss_pred             eccCCCcceecCCCCCcchhcccCCHHHHHHH-HHHhcc
Q psy7353          11 YASVTEGIYKCMECAKVDVIKTFKNKYSFQRH-AFLYHE   48 (139)
Q Consensus        11 ~~~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h-~~~~~~   48 (139)
                      ++|.+++||.|+.|++     .|.....|..| ++. |.
T Consensus         2 ~~H~~~k~~~C~~C~k-----~f~~~~~L~~H~~~~-H~   34 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHY-----SSITKNCLKRHVIQK-HS   34 (37)
T ss_dssp             CSSSSSCEEECSSSSC-----EEECHHHHHHHHHHH-TC
T ss_pred             CccCCCcCeECCCCCc-----ccCCHHHHHHHHHHH-cc
Confidence            3566777777777777     77777777777 544 54

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.19  E-value=3.4e-07  Score=39.15  Aligned_cols=26  Identities=12%  Similarity=0.014  Sum_probs=23.4

Q ss_pred             CCCCCCCCCCCCCCcchhcccccccC
Q psy7353         111 PATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus       111 ~~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      ||.|+.|++.|.....|..|++.|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            58999999999999999999998875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.19  E-value=1.6e-07  Score=42.24  Aligned_cols=28  Identities=14%  Similarity=0.121  Sum_probs=25.4

Q ss_pred             CCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353         110 MPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus       110 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      +||.|++|++.|.....|..|++.|.++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~   28 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIV   28 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccC
Confidence            5899999999999999999999988754

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.19  E-value=9.5e-08  Score=41.19  Aligned_cols=24  Identities=25%  Similarity=0.646  Sum_probs=17.8

Q ss_pred             CcccCCCCCccCCChhHHHhhhhh
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +||.|..|++.|...+.|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            567777777777777777777765

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.18  E-value=6.8e-07  Score=38.35  Aligned_cols=25  Identities=16%  Similarity=0.193  Sum_probs=13.4

Q ss_pred             CCCCCCCCCCCCCCCcchhcccccc
Q psy7353         110 MPATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus       110 ~~~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      +||.|+.|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4555555555555555555555443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.18  E-value=5.6e-07  Score=38.99  Aligned_cols=23  Identities=30%  Similarity=0.842  Sum_probs=13.2

Q ss_pred             cccCCCCCccCCChhHHHhhhhh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +|.|..|++.|.....|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            45555555555555555555555

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.46  E-value=2.4e-07  Score=40.37  Aligned_cols=28  Identities=29%  Similarity=0.651  Sum_probs=20.4

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCF  109 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (139)
                      +||.|..|++.|...+.|..|+++ |.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQ-HTGE   28 (29)
Confidence            367788888888888888888776 5443

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=2.7e-06  Score=38.96  Aligned_cols=28  Identities=36%  Similarity=0.574  Sum_probs=15.8

Q ss_pred             cCCCcceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          13 SVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        13 ~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      +.++++|.|+.|++     .|.....|..|++.
T Consensus         4 ~~~~k~~~C~~C~k-----~f~~~~~l~~H~~~   31 (36)
T 2els_A            4 GSSGKIFTCEYCNK-----VFKFKHSLQAHLRI   31 (36)
T ss_dssp             TSCCCCEECTTTCC-----EESSHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCc-----eeCCHHHHHHHHHH
Confidence            34455566666665     55555555555544

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.45  E-value=2.6e-07  Score=40.52  Aligned_cols=27  Identities=26%  Similarity=0.739  Sum_probs=20.3

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDC  108 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (139)
                      ++|.|..|++.|.....|..|+++ |.+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~-h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRI-HTG   28 (30)
Confidence            567788888888888888888776 444

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.12  E-value=2.8e-06  Score=36.87  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=12.7

Q ss_pred             cceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          17 GIYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        17 ~~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      ++|.|+.|++     .|.....|..|++.
T Consensus         2 k~~~C~~C~~-----~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            2 KPYQCDYCGR-----SFSDPTSKMRHLET   25 (30)
T ss_dssp             CCEECTTTCC-----EESCHHHHHHHHHT
T ss_pred             cCccCCCCCc-----ccCCHHHHHHHHHH
Confidence            3455555555     55555555555443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.12  E-value=3.4e-06  Score=36.37  Aligned_cols=26  Identities=31%  Similarity=0.804  Sum_probs=12.3

Q ss_pred             eeecCCCCCcCCChHHHHHHHHHhcC
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMKTGCQ   79 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~~~~~   79 (139)
                      +|.|+.|++.|.....|..|++.|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            34444444444444444444444443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.12  E-value=1e-06  Score=38.48  Aligned_cols=27  Identities=7%  Similarity=-0.088  Sum_probs=23.5

Q ss_pred             CCCCCCCCCCCCCCCcchhcc-cccccC
Q psy7353         110 MPATTPQGQRGQRASPVIDFH-KDSVFN  136 (139)
Q Consensus       110 ~~~~C~~C~~~f~~~~~l~~H-~~~~~~  136 (139)
                      +||.|+.|++.|.....|..| ++.|.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccC
Confidence            479999999999999999999 666654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.07  E-value=3.3e-06  Score=36.39  Aligned_cols=23  Identities=35%  Similarity=0.673  Sum_probs=11.6

Q ss_pred             ceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          18 IYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        18 ~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      +|.|+.|++     .|.....|..|++.
T Consensus         2 ~~~C~~C~k-----~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGK-----QFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSC-----EESCHHHHHHHHHH
T ss_pred             CccCCCCCC-----ccCChhHHHHHHHH
Confidence            445555555     45555555555443

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.00  E-value=6.4e-06  Score=38.00  Aligned_cols=28  Identities=14%  Similarity=0.267  Sum_probs=16.9

Q ss_pred             cCCCcceecC--CCCCcchhcccCCHHHHHHHHHH
Q psy7353          13 SVTEGIYKCM--ECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        13 ~~~~~~~~C~--~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      |.++++|.|.  .|++     .|.....|..|++.
T Consensus         3 ~~~~k~~~C~~~~C~k-----~f~~~~~L~~H~~~   32 (37)
T 1va1_A            3 PGKKKQHICHIQGCGK-----VYGKTSHLRAHLRW   32 (37)
T ss_dssp             SSSCCCEECCSTTCCC-----EESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCC-----ccCCHHHHHHHHHh
Confidence            4555666665  3666     66666666666554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.24  E-value=8.8e-07  Score=37.51  Aligned_cols=24  Identities=33%  Similarity=0.866  Sum_probs=18.6

Q ss_pred             CcccCCCCCccCCChhHHHhhhhh
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +||.|..|++.|...+.|..|+++
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            467788888888888888888776

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.98  E-value=6.2e-06  Score=36.28  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=11.8

Q ss_pred             ceecC--CCCCcchhcccCCHHHHHHHHHH
Q psy7353          18 IYKCM--ECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        18 ~~~C~--~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      ||.|+  .|++     .|.....|..|++.
T Consensus         2 p~~C~~~~C~k-----~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            2 PFMCTWSYCGK-----RFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCC-----BCSSHHHHHHHHTT
T ss_pred             CcCCcCCCCCc-----ccCCHhHHHHHHHH
Confidence            44554  5555     55555555555443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.97  E-value=5.8e-06  Score=38.30  Aligned_cols=24  Identities=17%  Similarity=0.578  Sum_probs=12.0

Q ss_pred             CCcceecCCCCCcchhcccCCHHHHHHHH
Q psy7353          15 TEGIYKCMECAKVDVIKTFKNKYSFQRHA   43 (139)
Q Consensus        15 ~~~~~~C~~c~~~~~~~~f~~~~~l~~h~   43 (139)
                      +++||.|++|++     .|.+.+.|..|+
T Consensus         5 gekp~~C~~CgK-----~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGI-----AFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTE-----ECSCHHHHHHHH
T ss_pred             CccCeECCCCCC-----ccCCHhHccCcC
Confidence            444555555555     455555555443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.95  E-value=3.4e-06  Score=41.28  Aligned_cols=36  Identities=25%  Similarity=0.529  Sum_probs=23.3

Q ss_pred             cCceeeeccCCCcceecC--CCCCcchhcccCCHHHHHHHHHH
Q psy7353           5 GLNLFRYASVTEGIYKCM--ECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus         5 ~l~~~~~~~~~~~~~~C~--~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      ++..+...|.++++|.|+  .|++     .|.....|..|++.
T Consensus         5 ~~~~~~~~H~~~k~~~C~~~~C~k-----~F~~~~~L~~H~~~   42 (47)
T 1ncs_A            5 GSIDKYVKEMPDKTFECLFPGCTK-----TFKRRYNIRSHIQT   42 (47)
T ss_dssp             SSGGGSCEEETTTEEECCCTTCCC-----EECSSSSHHHHHHH
T ss_pred             HHHHHHhccCCCCCeECCCCCCCC-----ccCCHHHHHHHHHH
Confidence            334444556677777774  5777     67777777777655

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.79  E-value=1e-05  Score=34.73  Aligned_cols=23  Identities=35%  Similarity=0.820  Sum_probs=14.6

Q ss_pred             cccCC--CCCccCCChhHHHhhhhh
Q psy7353          82 VFPCP--VCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        82 ~~~C~--~C~~~f~~~~~l~~H~~~  104 (139)
                      +|.|.  .|++.|...+.|..|+++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            45666  666666666666666665

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.60  E-value=1.8e-05  Score=41.53  Aligned_cols=47  Identities=15%  Similarity=0.084  Sum_probs=23.8

Q ss_pred             CCccCCChhHHHhhhhhhcCCCC------CCCCC--CCCCCCCCCcchhcccccc
Q psy7353          88 CGKEFSRPDKMKNHMKTVHDCFM------PATTP--QGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus        88 C~~~f~~~~~l~~H~~~~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~~  134 (139)
                      |++.|.....|..|+...|.+.+      +|.|.  .|++.+.....|..|++..
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            55555555555555532243322      45553  4555555555555555543

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.55  E-value=5.5e-05  Score=32.28  Aligned_cols=23  Identities=26%  Similarity=0.869  Sum_probs=13.7

Q ss_pred             ceecC--CCCCcchhcccCCHHHHHHHHHH
Q psy7353          18 IYKCM--ECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        18 ~~~C~--~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      +|.|+  .|++     .|.....|..|++.
T Consensus         2 ~~~C~~~~C~k-----~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGR-----SFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCE-----EESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcC-----ccCCHHHHHHHHHH
Confidence            45566  6666     56666666666543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.00024  Score=37.14  Aligned_cols=18  Identities=22%  Similarity=0.362  Sum_probs=10.3

Q ss_pred             ccCCHHHHHHHHHHhccC
Q psy7353          32 TFKNKYSFQRHAFLYHEG   49 (139)
Q Consensus        32 ~f~~~~~l~~h~~~~~~~   49 (139)
                      .|.+...|..|+...|.+
T Consensus        12 ~f~~~~~l~~Hv~~~Hv~   29 (64)
T 1zw8_A           12 SASSLFDLQRHLLKDHVS   29 (64)
T ss_dssp             CCSSHHHHHHHHHHHSCC
T ss_pred             cCCCHHHHHHHHHhhccC
Confidence            666666666665433543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.15  E-value=3e-05  Score=45.89  Aligned_cols=30  Identities=17%  Similarity=0.381  Sum_probs=20.9

Q ss_pred             HhcCCCcccCCCCCccCCChhHHHhhhhhh
Q psy7353          76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKTV  105 (139)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  105 (139)
                      .++|+++|.|..|++.|.+...|..|+++.
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            355667777777777777777777777663

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.88  E-value=0.00025  Score=41.96  Aligned_cols=29  Identities=21%  Similarity=0.547  Sum_probs=22.9

Q ss_pred             ccCCCCceeecCCCCCcCCChHHHHHHHHHh
Q psy7353          47 HEGCQRKVFPCPVCGKEFSRPDKMKNHMKTG   77 (139)
Q Consensus        47 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~   77 (139)
                      ++|  .++|.|..|++.|.+...|..|+++.
T Consensus        45 ~tG--ekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           45 LPG--GGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SGG--GGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CCC--CcceEcccCcchhCCHHHHHHHHhhh
Confidence            445  78888988999898888888887644

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.16  E-value=0.0017  Score=38.72  Aligned_cols=77  Identities=12%  Similarity=0.088  Sum_probs=49.6

Q ss_pred             CceeecCCCCCcCCChHHHHHHH--HHhcCC-CcccCCC------CCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHM--KTGCQR-KVFPCPV------CGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQR  122 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~--~~~~~~-~~~~C~~------C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~  122 (139)
                      .+++.|.+|+..|.+...+..|.  +.|... +.+.+..      -+..+...    .+... ..+...|.|..|+..|.
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~C~~C~~~f~  104 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEIS-DGEDRSKCCPVCNMTFS  104 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCCS-SCCCTTTEETTTTEECS
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----ccccc-cCCCCCeEcCCCCCEeC
Confidence            46789999999999999999998  334321 1121100      01122111    11122 44567799999999999


Q ss_pred             CCcchhccccc
Q psy7353         123 ASPVIDFHKDS  133 (139)
Q Consensus       123 ~~~~l~~H~~~  133 (139)
                      +...|..|...
T Consensus       105 s~~~~~~H~~g  115 (127)
T 1zu1_A          105 SPVVAESHYIG  115 (127)
T ss_dssp             SHHHHHHHHTS
T ss_pred             CHHHHHHHHCC
Confidence            99999998654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.98  E-value=0.03  Score=33.24  Aligned_cols=78  Identities=19%  Similarity=0.258  Sum_probs=48.4

Q ss_pred             CcceecCCCCCcchhcccCCHHHHHHHHHH-hccCCCCceeecC------CCCCcCCChHHHHHHHHHhcCCCcccCCCC
Q psy7353          16 EGIYKCMECAKVDVIKTFKNKYSFQRHAFL-YHEGCQRKVFPCP------VCGKEFSRPDKMKNHMKTGCQRKVFPCPVC   88 (139)
Q Consensus        16 ~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~-~~~~~~~~~~~c~------~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C   88 (139)
                      .+++.|..|..     .|.+...+..|... .|... .+.+.+.      .-+..+....    +.........|.|..|
T Consensus        30 ~~~~~C~~C~v-----~~~S~s~~~~H~~gkkH~~~-v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C   99 (127)
T 1zu1_A           30 FSDTQCKVCSA-----VLISESQKLAHYQSRKHANK-VRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVC   99 (127)
T ss_dssp             BCSSEETTTTE-----ECCSHHHHHHHHHCHHHHHH-HHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTT
T ss_pred             CCCCcCcCCCC-----EeCCHHHHHHHHCcHHHHHH-HHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCC
Confidence            46788999998     89999999888731 12210 1111110      0111221111    1123455678899999


Q ss_pred             CccCCChhHHHhhhh
Q psy7353          89 GKEFSRPDKMKNHMK  103 (139)
Q Consensus        89 ~~~f~~~~~l~~H~~  103 (139)
                      +..|.....+..|..
T Consensus       100 ~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A          100 NMTFSSPVVAESHYI  114 (127)
T ss_dssp             TEECSSHHHHHHHHT
T ss_pred             CCEeCCHHHHHHHHC
Confidence            999999999999975

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.69  E-value=0.016  Score=27.96  Aligned_cols=22  Identities=27%  Similarity=0.652  Sum_probs=11.5

Q ss_pred             eeecCCCCCcCCChHHHHHHHH
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMK   75 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~   75 (139)
                      ++.|+.|+..|.....|+.|++
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            3445555555555555555554

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.16  E-value=0.0018  Score=29.20  Aligned_cols=24  Identities=17%  Similarity=0.141  Sum_probs=15.0

Q ss_pred             CCCCCCCCCCCCCcchhccccccc
Q psy7353         112 ATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      |.||.|.+.|.+...|..|..+.|
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhcc
Confidence            556666666666666666655555

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.07  E-value=0.035  Score=26.77  Aligned_cols=24  Identities=25%  Similarity=0.556  Sum_probs=14.2

Q ss_pred             CcccCCCCCccCCChhHHHhhhhh
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      -.|.|+.|+..|.....|..|++.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            345566666666666666666653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.06  E-value=0.0076  Score=37.54  Aligned_cols=74  Identities=12%  Similarity=0.234  Sum_probs=45.8

Q ss_pred             CCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353          59 VCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus        59 ~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      .|+.... ...+..|.. .-.-.+..|+.|+..+ ....|..|... .-..++-.|+.|+..+.. ..|..|.+..-+.
T Consensus        89 GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~-~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~  162 (170)
T 3hcs_A           89 GCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILK-DCPRRQVSCDNCAASMAF-EDKEIHDQNCPLA  162 (170)
T ss_dssp             TCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHH-TCTTCEEECTTTCCEEEG-GGHHHHHTTCCC-
T ss_pred             CCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhh-hCCCCCeECCCCCCccCH-HHHHhHHHhCcCh
Confidence            3554332 344556652 2233566788888766 56678888865 344566778889887654 5677887665544

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.53  E-value=0.064  Score=33.27  Aligned_cols=69  Identities=16%  Similarity=0.394  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhccCCCCceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCCCCCC
Q psy7353          37 YSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPA  112 (139)
Q Consensus        37 ~~l~~h~~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (139)
                      ..+..|.....    -.+..|+.|+..+ ....+..|....-..++..|+.|+..+. ...|..|... .+|+.++
T Consensus        97 ~~l~~H~~~C~----~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~-~~~~~~~  165 (170)
T 3hcs_A           97 RHLEDHQAHCE----FALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQN-CPLALEH  165 (170)
T ss_dssp             GGHHHHHTTCT----TSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTT-CCC----
T ss_pred             hHHHHHHhcCC----ceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHh-CcChhhh
Confidence            34566643212    4567899998876 5667889998777888889999988764 4578999987 6776654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.51  E-value=0.18  Score=22.56  Aligned_cols=27  Identities=19%  Similarity=0.402  Sum_probs=22.6

Q ss_pred             ceecCCCCCcchhcccCCHHHHHHHHHHhccC
Q psy7353          18 IYKCMECAKVDVIKTFKNKYSFQRHAFLYHEG   49 (139)
Q Consensus        18 ~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~   49 (139)
                      .|.|+.|.+     .|.+...|..|....|..
T Consensus         5 GFiCP~C~~-----~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMK-----SLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCC-----EESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHH-----HcCCHHHHHHHHHhcccc
Confidence            488999999     899999999998776653

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=89.77  E-value=0.41  Score=22.93  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=18.5

Q ss_pred             cccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCC
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQ  121 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f  121 (139)
                      .|.|..||..|+....     .. -+   .-.|+.||++-
T Consensus         3 iY~C~rCg~~fs~~el-----~~-lP---~IrCpyCGyri   33 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQL-----KV-LP---GVRCPYCGYKI   33 (48)
T ss_dssp             --CCCCTTTTCCCCCS-----CC-CS---SSCCTTTCCSC
T ss_pred             EEEeeccCCCccHHHH-----hh-CC---CcccCccCcEE
Confidence            5788889988876531     11 12   24788898753

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=88.34  E-value=0.65  Score=26.44  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=23.7

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcc
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPV  126 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~  126 (139)
                      .++.|..||..|.            -...+|=.|+.|+-.....+.
T Consensus        66 ~p~~C~~CG~~F~------------~~~~kPsrCP~CkSe~Ie~P~   99 (105)
T 2gmg_A           66 KPAQCRKCGFVFK------------AEINIPSRCPKCKSEWIEEPR   99 (105)
T ss_dssp             CCCBBTTTCCBCC------------CCSSCCSSCSSSCCCCBCCCC
T ss_pred             ECcChhhCcCeec------------ccCCCCCCCcCCCCCccCCcc
Confidence            5789999998881            122356789999877665544

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=87.79  E-value=0.23  Score=31.90  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=20.5

Q ss_pred             CCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCC
Q psy7353          80 RKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRG  120 (139)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~  120 (139)
                      ...|.|..||..+.              |+.|+.||.|+..
T Consensus       169 ~~~~~C~~CG~i~~--------------g~~p~~CP~C~~~  195 (202)
T 1yuz_A          169 DKFHLCPICGYIHK--------------GEDFEKCPICFRP  195 (202)
T ss_dssp             CCEEECSSSCCEEE--------------SSCCSBCTTTCCB
T ss_pred             CcEEEECCCCCEEc--------------CcCCCCCCCCCCC
Confidence            35799999997653              2457999999864

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=87.22  E-value=0.29  Score=23.49  Aligned_cols=13  Identities=38%  Similarity=1.083  Sum_probs=8.9

Q ss_pred             CcccCCCCCccCC
Q psy7353          81 KVFPCPVCGKEFS   93 (139)
Q Consensus        81 ~~~~C~~C~~~f~   93 (139)
                      +.|.|..||..|.
T Consensus         3 ~~y~C~vCGyvyd   15 (46)
T 6rxn_A            3 QKYVCNVCGYEYD   15 (46)
T ss_dssp             CCEEETTTCCEEC
T ss_pred             CEEECCCCCeEEe
Confidence            4577777877664

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=86.59  E-value=0.18  Score=27.12  Aligned_cols=48  Identities=29%  Similarity=0.697  Sum_probs=31.5

Q ss_pred             eeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhh
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMK  103 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  103 (139)
                      .|.|..|+..+.- ..+..|...-.+...|.|.-|+..|.. ..++.|.+
T Consensus        10 ~F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~Hts   57 (79)
T 1wjv_A           10 FFTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHVK   57 (79)
T ss_dssp             EEEESSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTCCC
T ss_pred             EEEcCCCCCeeec-ccchhHHhhCCCCCcEEecccCCeeCC-CCEeCEee
Confidence            4778888866544 346677655555456888888888874 44556654

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=85.30  E-value=0.024  Score=26.34  Aligned_cols=24  Identities=13%  Similarity=-0.094  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCCCcchhccccccc
Q psy7353         111 PATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus       111 ~~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      .|.|+.|+..+.. ..+..|.+-|.
T Consensus         9 ~~~C~~C~~~i~~-~~~~EH~D~H~   32 (39)
T 2i5o_A            9 QVPCEKCGSLVPV-WDMPEHMDYHF   32 (39)
T ss_dssp             EEECTTTCCEEEG-GGHHHHHHHHH
T ss_pred             CcccccccCcCCc-ccccchhhHHH
Confidence            3566666666665 44555655443

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=83.72  E-value=1.7  Score=19.51  Aligned_cols=20  Identities=20%  Similarity=0.449  Sum_probs=9.2

Q ss_pred             ecCCCCCcCCChHHHHHHHH
Q psy7353          56 PCPVCGKEFSRPDKMKNHMK   75 (139)
Q Consensus        56 ~c~~C~~~~~~~~~l~~h~~   75 (139)
                      .|..|+-.|.....++.|.+
T Consensus        10 ~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A           10 YCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             EETTTTEECSSHHHHHHHHH
T ss_pred             eeccccceehhhHHHhhhhe
Confidence            34444444444444444443

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=83.72  E-value=0.44  Score=23.56  Aligned_cols=20  Identities=15%  Similarity=-0.127  Sum_probs=17.3

Q ss_pred             CCCCCCCCCCCCCcchhccc
Q psy7353         112 ATTPQGQRGQRASPVIDFHK  131 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~  131 (139)
                      -.|..|+..|..+..|..|+
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            58999999999999888885

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=81.35  E-value=1  Score=19.65  Aligned_cols=20  Identities=25%  Similarity=0.745  Sum_probs=11.8

Q ss_pred             CCCCCccCCChhHHHhhhhh
Q psy7353          85 CPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        85 C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |..|.+.|++--+|..|++.
T Consensus        12 crfckkkysdvknlikhire   31 (37)
T 2elu_A           12 CRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             ETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555566666666666554

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=80.20  E-value=0.8  Score=28.50  Aligned_cols=25  Identities=32%  Similarity=0.584  Sum_probs=16.5

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQR  119 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~  119 (139)
                      ..|.|+.||..+.              ++.|-.||.|+.
T Consensus       137 ~~~~C~~CG~i~~--------------~~~p~~CP~Cg~  161 (170)
T 3pwf_A          137 KVYICPICGYTAV--------------DEAPEYCPVCGA  161 (170)
T ss_dssp             CEEECTTTCCEEE--------------SCCCSBCTTTCC
T ss_pred             CeeEeCCCCCeeC--------------CCCCCCCCCCCC
Confidence            4577888886553              234558888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-06
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.001
d2drpa2	26	g.37.1.1 (A:140-165) Tramtrack protein (two zinc-f	2e-04
d2drpa2	26	g.37.1.1 (A:140-165) Tramtrack protein (two zinc-f	0.003
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.004

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 2e-06
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 53  KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT 104
           K++PC  CGK F+   +   HM      + + C VCGK+F     +  HMK 
Sbjct: 2   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 0.001
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 19 YKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKEFSRPDKMKNHMKT 76
          Y C +C K     +F +K    RH  ++          C VCGK+F     +  HMK 
Sbjct: 4  YPC-QCGK-----SFTHKSQRDRHMSMHLGLRPYG---CGVCGKKFKMKHHLVGHMKI 52

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

 Score = 34.6 bits (79), Expect = 2e-04
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 82  VFPCPVCGKEFSRPDKMKNHMKTVH 106
           V+PCP C KEF+R D M  H+K +H
Sbjct: 1   VYPCPFCFKEFTRKDNMTAHVKIIH 25

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

 Score = 31.6 bits (71), Expect = 0.003
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 54 VFPCPVCGKEFSRPDKMKNHMK 75
          V+PCP C KEF+R D M  H+K
Sbjct: 1  VYPCPFCFKEFTRKDNMTAHVK 22

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.2 bits (71), Expect = 0.004
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 81  KVFPCPVCGKEFSRPDKMKNHMKTVHD 107
           K + C  C K F +   +  H K  HD
Sbjct: 7   KPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (71), Expect = 0.004
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 81  KVFPCPVCGKEFSRPDKMKNHMKTVH 106
           K + C +C   F++   MK H+   H
Sbjct: 7   KPYECYICHARFTQSGTMKMHILQKH 32

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (71), Expect = 0.004
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 81  KVFPCPVCGKEFSRPDKMKNHMKTVH 106
           K + C  CGK FSRPD +  H+K VH
Sbjct: 4   KPYICQSCGKGFSRPDHLNGHIKQVH 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.69
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.64
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.32
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.25
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.25
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.23
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.22
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.2
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.14
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.13
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.11
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.1
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.08
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.07
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.02
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.97
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.94
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.93
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.9
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.85
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.85
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.83
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.79
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.72
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.69
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.68
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.66
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.6
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.59
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.59
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.54
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.5
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.46
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.41
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.41
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.3
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.27
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.24
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.12
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.09
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.05
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.0
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.0
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.98
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.97
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.95
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.93
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.91
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.89
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.78
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.72
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.71
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.65
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.52
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.47
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.45
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.45
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.4
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.33
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.32
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.32
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.29
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.25
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.22
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.21
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.2
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.12
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.11
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.11
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.08
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.07
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.02
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.94
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.89
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.81
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.78
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.64
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.49
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.47
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.4
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.36
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.35
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.31
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.21
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.99
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.92
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.74
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.67
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.56
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.35
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.29
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.59
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.59
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.51
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	94.04
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	93.92
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	93.9
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.55
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	93.47
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.22
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.93
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.36
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.35
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	91.21
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	90.48
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	90.21
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	87.97
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	87.35
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	86.17
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	82.4
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	81.84
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	80.76
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	80.76
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	80.55

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-18  Score=87.11  Aligned_cols=51  Identities=24%  Similarity=0.410  Sum_probs=25.2

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCCcchhccccc
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDS  133 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  133 (139)
                      +||.| .||+.|.....|..|+++ |.+++||.|++|++.|.....|..|++.
T Consensus         2 K~y~C-~Cgk~F~~~~~l~~H~~~-Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           2 KLYPC-QCGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHH-HSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             cCCCC-CCCCeECCHHHhHHHhhc-cccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            44555 255555555555555444 4445555555555555555555554443

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-16  Score=81.11  Aligned_cols=52  Identities=35%  Similarity=0.794  Sum_probs=45.5

Q ss_pred             CceeecCCCCCcCCChHHHHHHHHHhcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +++|.|. |++.|.....|..|+++|++++||.|..||+.|...+.|..|+++
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            4688894 999999999999998899999999999999999999999998886

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.3e-14  Score=65.05  Aligned_cols=38  Identities=39%  Similarity=0.731  Sum_probs=30.2

Q ss_pred             CCCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCC
Q psy7353          79 QRKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQ  116 (139)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  116 (139)
                      .++||.|..||+.|...++|.+|++..|.+++||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            46788888888888888888888764488888888863

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.1e-14  Score=64.39  Aligned_cols=34  Identities=12%  Similarity=0.043  Sum_probs=22.5

Q ss_pred             cCCCCCCCCCCCCCCCCCCcchhcccccccCcCC
Q psy7353         106 HDCFMPATTPQGQRGQRASPVIDFHKDSVFNKDI  139 (139)
Q Consensus       106 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  139 (139)
                      |+|++||.|+.|++.|...++|.+|++.+|.+||
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~~l   36 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHILQKHTENV   36 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSC
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHcccccCCCC
Confidence            5666666666666666666666666666666554

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.9e-13  Score=62.18  Aligned_cols=29  Identities=28%  Similarity=0.571  Sum_probs=17.9

Q ss_pred             HhcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +|++++||.|.+|+++|.+.++|..|+++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcc
Confidence            45566666666666666666666666665

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.4e-13  Score=61.59  Aligned_cols=35  Identities=29%  Similarity=0.586  Sum_probs=20.4

Q ss_pred             HHHHhcCCCcccCCCCCccCCChhHHHhhhhhhcCC
Q psy7353          73 HMKTGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDC  108 (139)
Q Consensus        73 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (139)
                      |+..|++++||.|.+||+.|.+.++|..|+++ |+|
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~-HtG   37 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTG   37 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTT-TCC
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCcc-CCC
Confidence            34455566666666666666666666666665 444

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2e-12  Score=57.84  Aligned_cols=32  Identities=31%  Similarity=0.567  Sum_probs=23.1

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhhhcCCC
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCF  109 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (139)
                      |++++||.|.+||++|.+.++|..|+++ |+||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~-HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRV-HTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHG-GGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccc-cCCC
Confidence            6677777777777777777777777777 5553

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8.7e-13  Score=61.33  Aligned_cols=37  Identities=5%  Similarity=-0.100  Sum_probs=34.3

Q ss_pred             hhhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353         100 NHMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus       100 ~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      +|+++ |.+++||.|++|++.|.....|..|++.|.++
T Consensus         2 rH~~~-Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQ-QRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSC-CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcc-cCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            57887 89999999999999999999999999999864

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.5e-12  Score=60.16  Aligned_cols=31  Identities=35%  Similarity=0.674  Sum_probs=17.0

Q ss_pred             HHHhcCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          74 MKTGCQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        74 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      .+.|++++||.|..|++.|.+.++|..|+++
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCccCCccCeEeCCCCCEecCHHHHHHHHhc
Confidence            3445555555555555555555555555554

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1e-11  Score=56.86  Aligned_cols=33  Identities=15%  Similarity=0.250  Sum_probs=27.9

Q ss_pred             cCCCCCCCCCCCCCCCCCCcchhcccccccCcC
Q psy7353         106 HDCFMPATTPQGQRGQRASPVIDFHKDSVFNKD  138 (139)
Q Consensus       106 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  138 (139)
                      |+|++||.|++|++.|...+.|..|++.|++++
T Consensus         3 HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            788888888888888888888888888888765

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=7.1e-12  Score=57.79  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=30.3

Q ss_pred             hhhhhcCCCCCCCCCCCCCCCCCCcchhcccccccC
Q psy7353         101 HMKTVHDCFMPATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus       101 H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      |.++ |++++||.|++|++.|.....|..|++.|.+
T Consensus         2 h~R~-HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRG-STGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSST-TCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCc-cCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            5677 8999999999999999999999999888754

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.2e-11  Score=55.91  Aligned_cols=35  Identities=37%  Similarity=0.823  Sum_probs=20.7

Q ss_pred             CceeecCCCCCcCCChHHHHHHHH-HhcCCCcccCC
Q psy7353          52 RKVFPCPVCGKEFSRPDKMKNHMK-TGCQRKVFPCP   86 (139)
Q Consensus        52 ~~~~~c~~C~~~~~~~~~l~~h~~-~~~~~~~~~C~   86 (139)
                      ++||.|..|++.|...+.|..|++ .|++++||.|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            455666666666666666666654 46666666554

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.4e-11  Score=56.34  Aligned_cols=34  Identities=26%  Similarity=0.478  Sum_probs=28.3

Q ss_pred             HhcCCCcccCCCCCccCCChhHHHhhhhhhcCCC
Q psy7353          76 TGCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDCF  109 (139)
Q Consensus        76 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (139)
                      +|+|++||.|..|++.|...++|..|++.+|.++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            5788999999999999999999999987666643

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=2.8e-11  Score=54.75  Aligned_cols=31  Identities=23%  Similarity=0.551  Sum_probs=20.8

Q ss_pred             hcCCCcccCCCCCccCCChhHHHhhhhhhcCC
Q psy7353          77 GCQRKVFPCPVCGKEFSRPDKMKNHMKTVHDC  108 (139)
Q Consensus        77 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (139)
                      ++|++||.|.+|++.|.+.++|.+|+++ |..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~-Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKV-HTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG-GTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccc-cCC
Confidence            4566777777777777777777777766 543

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=6.5e-12  Score=56.89  Aligned_cols=32  Identities=6%  Similarity=-0.154  Sum_probs=29.7

Q ss_pred             cCCCCCCCCCCCCCCCCCCcchhcccccccCc
Q psy7353         106 HDCFMPATTPQGQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus       106 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      |+|++||.|++|++.|+...+|.+|++.|.+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            68999999999999999999999999988764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.07  E-value=5.1e-11  Score=51.66  Aligned_cols=29  Identities=31%  Similarity=0.753  Sum_probs=20.3

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCFM  110 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (139)
                      +||.|..|++.|...+.|.+|+++ |+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~-HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT-TTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCc-ccCCC
Confidence            467777777777777777777776 66654

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=9.7e-11  Score=50.68  Aligned_cols=28  Identities=46%  Similarity=0.895  Sum_probs=17.6

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCF  109 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (139)
                      +||.|..|++.|.+.++|.+|+++ |+|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~-Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT-HQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG-GGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCc-cCCc
Confidence            456666666666666666666666 5554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=6.5e-11  Score=50.74  Aligned_cols=25  Identities=40%  Similarity=0.955  Sum_probs=14.8

Q ss_pred             CCcccCCCCCccCCChhHHHhhhhh
Q psy7353          80 RKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |+||.|..|++.|.+.++|.+|+++
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCC
Confidence            3556666666666666666666655

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.6e-10  Score=52.62  Aligned_cols=32  Identities=38%  Similarity=0.680  Sum_probs=21.6

Q ss_pred             ccCCC--CCccCCChhHHHhhhhhhcCCCCCCCCC
Q psy7353          83 FPCPV--CGKEFSRPDKMKNHMKTVHDCFMPATTP  115 (139)
Q Consensus        83 ~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~  115 (139)
                      |.|+.  |++.|.....|.+|+++ |.|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~-Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH-HHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCe-eCCCCCEeCC
Confidence            45543  77777777777777776 6677777765

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.2e-10  Score=49.77  Aligned_cols=28  Identities=29%  Similarity=0.560  Sum_probs=16.8

Q ss_pred             cCCCcceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          13 SVTEGIYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        13 ~~~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      |++++||.|.+|++     .|.+.+.|..|++.
T Consensus         2 HTgekpy~C~~Cgk-----~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           2 HSGEKPYGCVECGK-----AFSRSSILVQHQRV   29 (33)
T ss_dssp             TTTCCCEECSSSCC-----EESSHHHHHHHHHG
T ss_pred             cCCCCCeeCCCCCC-----EeCchHHhHhhccc
Confidence            55566666666666     56666666666554

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.90  E-value=5.9e-10  Score=48.20  Aligned_cols=29  Identities=31%  Similarity=0.793  Sum_probs=17.6

Q ss_pred             ceeecCCCCCcCCChHHHHHHHHHhcCCC
Q psy7353          53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRK   81 (139)
Q Consensus        53 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~~   81 (139)
                      +||.|++|++.|...+.|..|+++|++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            35666666666666666666666666553

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=9.2e-10  Score=47.05  Aligned_cols=26  Identities=38%  Similarity=0.875  Sum_probs=13.5

Q ss_pred             ceeecCCCCCcCCChHHHHHHHHHhc
Q psy7353          53 KVFPCPVCGKEFSRPDKMKNHMKTGC   78 (139)
Q Consensus        53 ~~~~c~~C~~~~~~~~~l~~h~~~~~   78 (139)
                      +||.|++|++.|...+.|..|+++|+
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCCcc
Confidence            45555555555555555555555544

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.1e-09  Score=47.22  Aligned_cols=28  Identities=43%  Similarity=0.869  Sum_probs=17.6

Q ss_pred             ceeecCCCCCcCCChHHHHHHHHHhcCC
Q psy7353          53 KVFPCPVCGKEFSRPDKMKNHMKTGCQR   80 (139)
Q Consensus        53 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~   80 (139)
                      +||.|++|++.|...+.|..|+++|+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            3566666666666666666666666655

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.2e-10  Score=46.29  Aligned_cols=24  Identities=38%  Similarity=0.768  Sum_probs=18.1

Q ss_pred             CcccCCCCCccCCChhHHHhhhhh
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +||.|.+||+.|.+.+.|..|+++
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccC
Confidence            477777777777777777777776

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.2e-09  Score=48.71  Aligned_cols=32  Identities=38%  Similarity=0.865  Sum_probs=24.7

Q ss_pred             eecCC--CCCcCCChHHHHHHHHHhcCCCcccCC
Q psy7353          55 FPCPV--CGKEFSRPDKMKNHMKTGCQRKVFPCP   86 (139)
Q Consensus        55 ~~c~~--C~~~~~~~~~l~~h~~~~~~~~~~~C~   86 (139)
                      |.|+.  |++.|...+.|..|+++|++++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            56665  888888888888888888888888775

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.8e-09  Score=45.47  Aligned_cols=27  Identities=33%  Similarity=0.778  Sum_probs=16.1

Q ss_pred             CcccCCC--CCccCCChhHHHhhhhhhcCC
Q psy7353          81 KVFPCPV--CGKEFSRPDKMKNHMKTVHDC  108 (139)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  108 (139)
                      +||.|..  |++.|...++|.+|+++ |+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HtG   29 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS-HTG   29 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH-TTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc-CcC
Confidence            3566655  66666666666666665 554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.3e-09  Score=43.58  Aligned_cols=23  Identities=35%  Similarity=0.797  Sum_probs=12.5

Q ss_pred             ceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          18 IYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        18 ~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      ||.|.+||+     .|...+.|..|++.
T Consensus         2 Py~C~eCgK-----~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           2 PYKCLECGK-----AFSQNSGLINHQRI   24 (26)
T ss_dssp             CEECSSSCC-----EESSHHHHHHHHHH
T ss_pred             CccCCCCcC-----eeccCcccccCccC
Confidence            555555555     55555555555543

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.8e-09  Score=45.23  Aligned_cols=29  Identities=38%  Similarity=0.808  Sum_probs=19.6

Q ss_pred             CcccCC--CCCccCCChhHHHhhhhhhcCCCC
Q psy7353          81 KVFPCP--VCGKEFSRPDKMKNHMKTVHDCFM  110 (139)
Q Consensus        81 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~  110 (139)
                      +||.|+  .|++.|...++|.+|+++ |+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~-HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc-ccccC
Confidence            466773  477777777777777776 66653

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=2.4e-09  Score=51.61  Aligned_cols=30  Identities=7%  Similarity=-0.202  Sum_probs=13.5

Q ss_pred             cCCCCCCCCCC--CCCCCCCCcchhccccccc
Q psy7353         106 HDCFMPATTPQ--GQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus       106 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~  135 (139)
                      |.+++||.|+.  |++.|.....|..|++.|.
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            34444444433  4444444444444444443

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=8.4e-09  Score=45.36  Aligned_cols=24  Identities=29%  Similarity=0.708  Sum_probs=12.0

Q ss_pred             CcccCCC--CCccCCChhHHHhhhhh
Q psy7353          81 KVFPCPV--CGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~  104 (139)
                      +||.|..  |++.|....+|.+|+++
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhh
Confidence            4455533  55555555555555554

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=6.3e-09  Score=45.15  Aligned_cols=23  Identities=35%  Similarity=0.821  Sum_probs=12.3

Q ss_pred             cccCCC--CCccCCChhHHHhhhhh
Q psy7353          82 VFPCPV--CGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        82 ~~~C~~--C~~~f~~~~~l~~H~~~  104 (139)
                      ||.|..  |++.|...++|.+|+++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCCceECcHHHcCccccc
Confidence            455533  55555555555555554

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.5e-08  Score=43.12  Aligned_cols=27  Identities=26%  Similarity=0.658  Sum_probs=15.5

Q ss_pred             eeecCC--CCCcCCChHHHHHHHHHhcCC
Q psy7353          54 VFPCPV--CGKEFSRPDKMKNHMKTGCQR   80 (139)
Q Consensus        54 ~~~c~~--C~~~~~~~~~l~~h~~~~~~~   80 (139)
                      ||.|++  |++.|...+.|..|+++|++|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            555555  556666666666665555553

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.2e-08  Score=42.86  Aligned_cols=26  Identities=31%  Similarity=0.690  Sum_probs=14.5

Q ss_pred             eeecCC--CCCcCCChHHHHHHHHHhcC
Q psy7353          54 VFPCPV--CGKEFSRPDKMKNHMKTGCQ   79 (139)
Q Consensus        54 ~~~c~~--C~~~~~~~~~l~~h~~~~~~   79 (139)
                      ||.|++  |++.|...+.|..|+++|++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            455554  55555555555555555554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=2.8e-08  Score=47.74  Aligned_cols=28  Identities=29%  Similarity=0.749  Sum_probs=15.7

Q ss_pred             cCCCcceecCC--CCCcchhcccCCHHHHHHHHHH
Q psy7353          13 SVTEGIYKCME--CAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        13 ~~~~~~~~C~~--c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      |.+++||.|+.  |++     .|...+.|..|++.
T Consensus        13 h~gekpy~C~~~~C~k-----~F~~~~~L~~H~r~   42 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTK-----TFKRRYNIRSHIQT   42 (47)
T ss_dssp             EETTTEEECCCTTCCC-----EECSSSSHHHHHHH
T ss_pred             ccCCCCeECCcCCCCc-----cccCchHHHhhccc
Confidence            55555555544  555     55555555555544

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.6e-08  Score=42.28  Aligned_cols=25  Identities=16%  Similarity=0.070  Sum_probs=15.8

Q ss_pred             CCCCCCC--CCCCCCCCcchhcccccc
Q psy7353         110 MPATTPQ--GQRGQRASPVIDFHKDSV  134 (139)
Q Consensus       110 ~~~~C~~--C~~~f~~~~~l~~H~~~~  134 (139)
                      +||.|+.  |++.|+...+|.+|++.|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            4666654  666666666666666654

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=1.2e-07  Score=41.55  Aligned_cols=29  Identities=17%  Similarity=0.022  Sum_probs=21.7

Q ss_pred             CCCCCCCC--CCCCCCCCcchhcccccccCc
Q psy7353         109 FMPATTPQ--GQRGQRASPVIDFHKDSVFNK  137 (139)
Q Consensus       109 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  137 (139)
                      |+||.|+.  |++.|+...+|.+|++.|..+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            56788866  888888888888887777643

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.1e-07  Score=41.45  Aligned_cols=27  Identities=37%  Similarity=0.801  Sum_probs=15.2

Q ss_pred             eeecCC--CCCcCCChHHHHHHHHHhcCC
Q psy7353          54 VFPCPV--CGKEFSRPDKMKNHMKTGCQR   80 (139)
Q Consensus        54 ~~~c~~--C~~~~~~~~~l~~h~~~~~~~   80 (139)
                      ||.|+.  |++.|...+.|..|+++|+++
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            455542  555555555565555555554

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=8.1e-08  Score=41.12  Aligned_cols=23  Identities=35%  Similarity=1.001  Sum_probs=12.5

Q ss_pred             cccCCC--CCccCCChhHHHhhhhh
Q psy7353          82 VFPCPV--CGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        82 ~~~C~~--C~~~f~~~~~l~~H~~~  104 (139)
                      ||.|..  |++.|...++|.+|+++
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCc
Confidence            455533  55555555555555554

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=9.7e-08  Score=37.92  Aligned_cols=24  Identities=4%  Similarity=-0.134  Sum_probs=13.1

Q ss_pred             CCCCCCCCCCCCCcchhccccccc
Q psy7353         112 ATTPQGQRGQRASPVIDFHKDSVF  135 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~~~~~  135 (139)
                      +.|+.|++.|+.++.|..|.++|.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CccchhhhHhcchhHHHHHhhccC
Confidence            455555555555555555555543

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.7e-07  Score=39.69  Aligned_cols=24  Identities=33%  Similarity=0.920  Sum_probs=17.7

Q ss_pred             CcccCCC--CCccCCChhHHHhhhhh
Q psy7353          81 KVFPCPV--CGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~  104 (139)
                      +||.|..  |++.|...++|.+|+++
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            4677755  77777777777777776

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=3.2e-07  Score=39.21  Aligned_cols=25  Identities=32%  Similarity=0.895  Sum_probs=12.0

Q ss_pred             eeecCC--CCCcCCChHHHHHHHHHhc
Q psy7353          54 VFPCPV--CGKEFSRPDKMKNHMKTGC   78 (139)
Q Consensus        54 ~~~c~~--C~~~~~~~~~l~~h~~~~~   78 (139)
                      ||.|++  |++.|...+.|..|++.|+
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccC
Confidence            444444  4455555555555544443

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.7e-07  Score=37.20  Aligned_cols=28  Identities=11%  Similarity=0.035  Sum_probs=15.5

Q ss_pred             CCCCCCCCCCCCCCcchhcccccccCcC
Q psy7353         111 PATTPQGQRGQRASPVIDFHKDSVFNKD  138 (139)
Q Consensus       111 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~  138 (139)
                      ||.|..|.++..+.++|+-|+++.|++|
T Consensus         2 py~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccccccccccccchhhhhhhhcccccC
Confidence            5555555555555555555555555443

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.1e-06  Score=37.35  Aligned_cols=28  Identities=29%  Similarity=0.572  Sum_probs=13.5

Q ss_pred             cCCCCCccCCChhHHHhhhhhhcCCCCCC
Q psy7353          84 PCPVCGKEFSRPDKMKNHMKTVHDCFMPA  112 (139)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  112 (139)
                      .|..||+.|.+-..|.+|.-. |.+++||
T Consensus         7 ~ce~cgk~frdvyhlnrhkls-hs~ekpy   34 (35)
T d2epra1           7 ACEICGKIFRDVYHLNRHKLS-HSGEKPY   34 (35)
T ss_dssp             EETTTTEEESSHHHHHHHGGG-SCSCCCC
T ss_pred             hHHHHHHHHHHHHHHHhhhcc-cCCCCCC
Confidence            344445555444444444444 4444444

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=9.9e-07  Score=37.48  Aligned_cols=31  Identities=26%  Similarity=0.536  Sum_probs=21.9

Q ss_pred             ceeecCCCCCcCCChHHHHHHHHHhcCCCcc
Q psy7353          53 KVFPCPVCGKEFSRPDKMKNHMKTGCQRKVF   83 (139)
Q Consensus        53 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~~~~   83 (139)
                      +...|.+||+.|.+...|.+|..+|++++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            4456777777777777777777777777765

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=2.1e-07  Score=38.15  Aligned_cols=24  Identities=46%  Similarity=1.020  Sum_probs=13.5

Q ss_pred             CcccCCCCCccCCChhHHHhhhhh
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +||.|..||+.|.......+|.++
T Consensus         2 kPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhh
Confidence            455555555555555555555554

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.7e-06  Score=35.93  Aligned_cols=26  Identities=38%  Similarity=0.959  Sum_probs=15.4

Q ss_pred             CcccCCC--CCccCCChhHHHhhhhhhc
Q psy7353          81 KVFPCPV--CGKEFSRPDKMKNHMKTVH  106 (139)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~~h  106 (139)
                      +||.|..  |++.+.++++|..|++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            3555544  6666666666666666543

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=4.4e-07  Score=37.09  Aligned_cols=25  Identities=4%  Similarity=-0.009  Sum_probs=15.5

Q ss_pred             CCCCCCCCCCCCCcchhcccccccC
Q psy7353         112 ATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      |.|+.|+......+.|++|+++|.+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             ccccccCcccCCHHHHHHHHHHhcC
Confidence            5566666666666666666666654

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=2.2e-06  Score=35.04  Aligned_cols=26  Identities=15%  Similarity=-0.105  Sum_probs=15.8

Q ss_pred             CCCCCCCCCCCCCCCCcchhcccccc
Q psy7353         109 FMPATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus       109 ~~~~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      |+||.|+.|++.|...++..+|.+.|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            35666666666666666666665544

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.6e-06  Score=34.19  Aligned_cols=29  Identities=28%  Similarity=0.513  Sum_probs=24.9

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCF  109 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (139)
                      +||+|..|.....+.++|.-|+++.|..+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            58899999988899999999999877755

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3e-07  Score=38.22  Aligned_cols=27  Identities=11%  Similarity=0.099  Sum_probs=24.3

Q ss_pred             CCCCCCC--CCCCCCCCcchhcccccccC
Q psy7353         110 MPATTPQ--GQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus       110 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~  136 (139)
                      +||.|..  |++.+++.+.|++|++++|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5899965  99999999999999999885

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=5.5e-06  Score=32.75  Aligned_cols=22  Identities=59%  Similarity=1.093  Sum_probs=14.2

Q ss_pred             ccCCCCCccCCChhHHHhhhhh
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      ..|..|++.|+....|..|++.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CccchhhhHhcchhHHHHHhhc
Confidence            3566666666666666666665

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4.9e-06  Score=34.48  Aligned_cols=27  Identities=41%  Similarity=0.908  Sum_probs=12.2

Q ss_pred             ceeecCCCCCcCCChHHHHHHHHHhcC
Q psy7353          53 KVFPCPVCGKEFSRPDKMKNHMKTGCQ   79 (139)
Q Consensus        53 ~~~~c~~C~~~~~~~~~l~~h~~~~~~   79 (139)
                      +||.|++|+..|.....+..|.++|.+
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            344444444444444444444444433

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=5.4e-06  Score=33.60  Aligned_cols=27  Identities=19%  Similarity=0.580  Sum_probs=16.6

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDC  108 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (139)
                      +||+|..|.+.-...+.|..|++. |+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~-htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRS-HTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTT-CCS
T ss_pred             CcceeeecccccCCchheEEeeec-ccC
Confidence            566666666666666666666665 444

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.3e-06  Score=39.20  Aligned_cols=25  Identities=8%  Similarity=-0.106  Sum_probs=19.2

Q ss_pred             CCCCCCCCCCCCCCCCCcchhcccc
Q psy7353         108 CFMPATTPQGQRGQRASPVIDFHKD  132 (139)
Q Consensus       108 ~~~~~~C~~C~~~f~~~~~l~~H~~  132 (139)
                      |.+||.|..|+++|+.++.+.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            5678888888888888888877753

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=9.8e-06  Score=33.56  Aligned_cols=25  Identities=44%  Similarity=1.060  Sum_probs=17.7

Q ss_pred             CCcccCCCCCccCCChhHHHhhhhh
Q psy7353          80 RKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      ++||.|++|...|....-+.-|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrs   25 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRS   25 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeec
Confidence            4677777777777777777777776

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.5e-05  Score=32.27  Aligned_cols=28  Identities=14%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             ceeecCCCCCcCCChHHHHHHHHHhcCC
Q psy7353          53 KVFPCPVCGKEFSRPDKMKNHMKTGCQR   80 (139)
Q Consensus        53 ~~~~c~~C~~~~~~~~~l~~h~~~~~~~   80 (139)
                      +||+|+.|...-.+++.|..|++.|+++
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CcceeeecccccCCchheEEeeecccCc
Confidence            5777888877777777777777777663

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.6e-05  Score=31.70  Aligned_cols=26  Identities=31%  Similarity=0.751  Sum_probs=14.9

Q ss_pred             ccCCCCCccCCChhHHHhhhhhhcCCC
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKTVHDCF  109 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (139)
                      |.|+.|+....-++-|+.|+++ |+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs-HT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT-HTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSSC
T ss_pred             ccccccCcccCCHHHHHHHHHH-hcCC
Confidence            4555666666666666666665 4443

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=4e-05  Score=30.81  Aligned_cols=12  Identities=25%  Similarity=0.531  Sum_probs=5.1

Q ss_pred             ccCCHHHHHHHH
Q psy7353          32 TFKNKYSFQRHA   43 (139)
Q Consensus        32 ~f~~~~~l~~h~   43 (139)
                      .|...+.|++|+
T Consensus        11 af~essklkrh~   22 (28)
T d1ubdc2          11 AFVESSKLKRHQ   22 (28)
T ss_dssp             EESSHHHHHHHG
T ss_pred             HHHHHHHHHHHh
Confidence            444444444443

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=5.1e-05  Score=30.51  Aligned_cols=21  Identities=38%  Similarity=0.779  Sum_probs=10.7

Q ss_pred             cCCCCCccCCChhHHHhhhhh
Q psy7353          84 PCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      .|.+||++|...+.|.+|.-.
T Consensus         4 vc~ecgkaf~essklkrh~lv   24 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLV   24 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGG
T ss_pred             hHHHHhHHHHHHHHHHHHhhc
Confidence            344555555555555555443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=4.4e-06  Score=34.16  Aligned_cols=26  Identities=31%  Similarity=0.766  Sum_probs=16.9

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhc
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVH  106 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h  106 (139)
                      +||.|..|.....++++|..|++.-|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            36667777666667777777766533

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=3.9e-05  Score=34.29  Aligned_cols=27  Identities=26%  Similarity=0.630  Sum_probs=23.1

Q ss_pred             cCCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          78 CQRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        78 ~~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      ++-+||.|..|++.|.+..++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            366899999999999999999998653

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=5.6e-06  Score=33.76  Aligned_cols=22  Identities=27%  Similarity=0.696  Sum_probs=12.1

Q ss_pred             cccCCCCCccCCChhHHHhhhh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMK  103 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (139)
                      ||.|..|..+|....+|..|++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            3455555555555555555554

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=5.2e-05  Score=30.80  Aligned_cols=24  Identities=13%  Similarity=0.016  Sum_probs=17.2

Q ss_pred             CCCCCCCCCCCCCCcchhcccccc
Q psy7353         111 PATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus       111 ~~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      ||.|..|...|.++.+|-+|+++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            567777777777777777776664

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=0.00019  Score=28.37  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=10.0

Q ss_pred             cCCCCCcCCChHHHHHHHHHhcC
Q psy7353          57 CPVCGKEFSRPDKMKNHMKTGCQ   79 (139)
Q Consensus        57 c~~C~~~~~~~~~l~~h~~~~~~   79 (139)
                      |+.|.+.|.+...|..|.+.|++
T Consensus         3 cp~c~k~f~skyylkvhnr~htg   25 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRKHTG   25 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSS
T ss_pred             CcchHHHHHHhHhhhhccccccC
Confidence            44444444444444444444443

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.32  E-value=0.00013  Score=32.28  Aligned_cols=27  Identities=22%  Similarity=0.668  Sum_probs=14.4

Q ss_pred             ceeecCCCCCcCCChHHHHHHHHHhcC
Q psy7353          53 KVFPCPVCGKEFSRPDKMKNHMKTGCQ   79 (139)
Q Consensus        53 ~~~~c~~C~~~~~~~~~l~~h~~~~~~   79 (139)
                      +.|.|.+|++.|.+..+|-.|+..|..
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcc
Confidence            345555555555555555555555543

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=9.4e-05  Score=29.60  Aligned_cols=24  Identities=17%  Similarity=0.571  Sum_probs=16.0

Q ss_pred             CcccCCCCCccCCChhHHHhhhhh
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      +||.|..|++.-.+.++|..|+++
T Consensus         2 kp~kck~cdyaaadsssl~kh~ri   25 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRI   25 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccccccchhcchhhHhhhhhc
Confidence            466666666666666666666666

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.25  E-value=1.5e-05  Score=33.30  Aligned_cols=26  Identities=31%  Similarity=0.892  Sum_probs=17.0

Q ss_pred             cccCCCCCccCCChhHHHhhhhhhcC
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKTVHD  107 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h~  107 (139)
                      ||.|..|++.|....-|.+|.+.-|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            56666777777777666676655454

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=9.7e-05  Score=30.06  Aligned_cols=26  Identities=8%  Similarity=0.055  Sum_probs=15.4

Q ss_pred             CCCCCCCCCCCCCCcchhcccccccC
Q psy7353         111 PATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus       111 ~~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      ||+|+.|...-..+++|.+|++..|+
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CcccceecccccCcchHHHHHHHHcc
Confidence            55666666666666666666555554

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.21  E-value=0.00011  Score=30.59  Aligned_cols=26  Identities=12%  Similarity=0.124  Sum_probs=16.4

Q ss_pred             CCCCCCCCCCCCCCcchhcccccccC
Q psy7353         111 PATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus       111 ~~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      ||.|..|++.|..++.|-+|.+.-|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            46666666666666666666655553

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.20  E-value=0.00011  Score=29.73  Aligned_cols=24  Identities=42%  Similarity=0.892  Sum_probs=14.4

Q ss_pred             CcccCCC--CCccCCChhHHHhhhhh
Q psy7353          81 KVFPCPV--CGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        81 ~~~~C~~--C~~~f~~~~~l~~H~~~  104 (139)
                      .||.|+.  |++.|+.++.|.+|.+.
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhc
Confidence            3555533  66666666666666654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.12  E-value=6.3e-05  Score=29.29  Aligned_cols=22  Identities=18%  Similarity=0.706  Sum_probs=15.4

Q ss_pred             ccCCCCCccCCChhHHHhhhhh
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |.|..|..+|...+.|.+|++.
T Consensus         1 ykcglcersfveksalsrhqrv   22 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV   22 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHHh
Confidence            4566677777777777777765

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.11  E-value=1.7e-05  Score=32.21  Aligned_cols=25  Identities=12%  Similarity=0.194  Sum_probs=21.7

Q ss_pred             CCCCCC--CCCCCCCCCcchhcccccc
Q psy7353         110 MPATTP--QGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus       110 ~~~~C~--~C~~~f~~~~~l~~H~~~~  134 (139)
                      .||.|+  .|++.|...+-|++|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            589996  4999999999999998764

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=2.1e-05  Score=34.70  Aligned_cols=25  Identities=36%  Similarity=0.809  Sum_probs=11.9

Q ss_pred             CCcccC--CCCCccCCChhHHHhhhhh
Q psy7353          80 RKVFPC--PVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        80 ~~~~~C--~~C~~~f~~~~~l~~H~~~  104 (139)
                      ++||.|  +.|+..|.....|..|...
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~K   30 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhh
Confidence            444554  3344555555555444443

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00044  Score=27.94  Aligned_cols=26  Identities=35%  Similarity=0.717  Sum_probs=15.1

Q ss_pred             eeecCCCCCcCCChHHHHHHHHHhcC
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMKTGCQ   79 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~~~~~   79 (139)
                      .|.|..|...|.....|..|+.+|++
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            35566666666666666666555554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00025  Score=27.98  Aligned_cols=26  Identities=31%  Similarity=0.531  Sum_probs=21.2

Q ss_pred             cCCCCCccCCChhHHHhhhhhhcCCCC
Q psy7353          84 PCPVCGKEFSRPDKMKNHMKTVHDCFM  110 (139)
Q Consensus        84 ~C~~C~~~f~~~~~l~~H~~~~h~~~~  110 (139)
                      +|+.|.+.|.+...|..|-+. |+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~-htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK-HTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH-HSSCC
T ss_pred             cCcchHHHHHHhHhhhhcccc-ccCCC
Confidence            588888899998888888887 67664

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.0004  Score=27.70  Aligned_cols=24  Identities=25%  Similarity=0.510  Sum_probs=12.0

Q ss_pred             cceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          17 GIYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        17 ~~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      +||.|..|..     ...+.+.|.+|.+.
T Consensus         2 kp~kck~cdy-----aaadsssl~kh~ri   25 (28)
T d2dmda1           2 KPYKCKTCDY-----AAADSSSLNKHLRI   25 (28)
T ss_dssp             CSEECSSSCC-----EESSHHHHHHHHHH
T ss_pred             CCcccccccc-----hhcchhhHhhhhhc
Confidence            3455555555     44555555555443

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00054  Score=26.56  Aligned_cols=23  Identities=35%  Similarity=0.716  Sum_probs=19.2

Q ss_pred             ceecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          18 IYKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        18 ~~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      ||.|+.|..     .|.++..|+.|+..
T Consensus         2 pykcsscsq-----qfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQ-----QFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCC-----EESSHHHHHHHHHH
T ss_pred             CCcccHHHH-----HHHHHHHHHHHHHh
Confidence            788988988     89999888888753

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.89  E-value=0.0006  Score=26.43  Aligned_cols=23  Identities=9%  Similarity=-0.007  Sum_probs=15.3

Q ss_pred             CCCCCCCCCCCCCcchhcccccc
Q psy7353         112 ATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      |.|..|.+.|..++.|.+|.+-|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            46666777777777777666654

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.0004  Score=26.93  Aligned_cols=22  Identities=23%  Similarity=0.751  Sum_probs=14.0

Q ss_pred             cccCCCCCccCCChhHHHhhhh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMK  103 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (139)
                      ||.|..|...|.+..+|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666654

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00022  Score=29.67  Aligned_cols=21  Identities=29%  Similarity=0.627  Sum_probs=12.0

Q ss_pred             cccCCC--CCccCCChhHHHhhh
Q psy7353          82 VFPCPV--CGKEFSRPDKMKNHM  102 (139)
Q Consensus        82 ~~~C~~--C~~~f~~~~~l~~H~  102 (139)
                      ||.|..  |.+.|+..++...|+
T Consensus         2 PY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHH
T ss_pred             CccccCCChhhhhcchhhhhhhc
Confidence            555533  666666666665664

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.64  E-value=0.00079  Score=29.69  Aligned_cols=28  Identities=25%  Similarity=0.657  Sum_probs=22.7

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCF  109 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  109 (139)
                      +.|.|..|++.|.....|--|++. |..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~-Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNV-HRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT-TCCS
T ss_pred             CccCCCCCCCccCCcccccchHhh-hcch
Confidence            568899999999999999999887 5433

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00012  Score=31.17  Aligned_cols=25  Identities=8%  Similarity=0.022  Sum_probs=12.6

Q ss_pred             CCCCCCCCCCCCCcchhcccccccC
Q psy7353         112 ATTPQGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      |.|+.|++.|+.++-+.+|-++..+
T Consensus         5 fvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeecccccchhcchHHHHHhhhcCC
Confidence            4455555555555555555444443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00097  Score=29.25  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=11.5

Q ss_pred             CCCCCC--CCCCCCCCCCcchhccccc
Q psy7353         109 FMPATT--PQGQRGQRASPVIDFHKDS  133 (139)
Q Consensus       109 ~~~~~C--~~C~~~f~~~~~l~~H~~~  133 (139)
                      ++||.|  +.|+.+|.+...|.-|++.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~K   30 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhh
Confidence            344444  2344555554444444433

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.0012  Score=26.60  Aligned_cols=27  Identities=37%  Similarity=0.794  Sum_probs=16.9

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDC  108 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  108 (139)
                      ..|.|..|...|.....|..|+-. |.|
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvs-htg   29 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVS-HTG   29 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH-HSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeec-ccC
Confidence            456666666666666666666665 444

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.36  E-value=0.0015  Score=26.45  Aligned_cols=12  Identities=25%  Similarity=0.451  Sum_probs=4.9

Q ss_pred             ccCCHHHHHHHH
Q psy7353          32 TFKNKYSFQRHA   43 (139)
Q Consensus        32 ~f~~~~~l~~h~   43 (139)
                      +|.+...|.+|.
T Consensus        13 gf~tlhhltrhs   24 (30)
T d1tf3a2          13 GFTSLHHLTRHS   24 (30)
T ss_dssp             EESSTTHHHHHH
T ss_pred             cchhhhhhhhhh
Confidence            444444444443

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.0014  Score=26.00  Aligned_cols=22  Identities=36%  Similarity=0.841  Sum_probs=14.7

Q ss_pred             cccCCCCCccCCChhHHHhhhh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMK  103 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (139)
                      ||+|..||+.|-...+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4667777777777777766643

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.31  E-value=0.00068  Score=27.46  Aligned_cols=17  Identities=29%  Similarity=0.556  Sum_probs=7.9

Q ss_pred             CCccCCChhHHHhhhhh
Q psy7353          88 CGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        88 C~~~f~~~~~l~~H~~~  104 (139)
                      |.+.|..--.|.+|.-+
T Consensus        10 c~kgf~tlhhltrhs~t   26 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHSLT   26 (30)
T ss_dssp             CCCEESSTTHHHHHHHH
T ss_pred             ccccchhhhhhhhhhcc
Confidence            44444444444444443

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00058  Score=28.34  Aligned_cols=27  Identities=11%  Similarity=0.030  Sum_probs=22.4

Q ss_pred             CCCCCCC--CCCCCCCCcchhccc-ccccC
Q psy7353         110 MPATTPQ--GQRGQRASPVIDFHK-DSVFN  136 (139)
Q Consensus       110 ~~~~C~~--C~~~f~~~~~l~~H~-~~~~~  136 (139)
                      +||.|..  |.+.|+..++--+|. +.|.+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            5899965  999999999999997 55544

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.0063  Score=24.04  Aligned_cols=20  Identities=25%  Similarity=0.650  Sum_probs=10.3

Q ss_pred             ceecCCCCCcchhcccCCHHHHHHH
Q psy7353          18 IYKCMECAKVDVIKTFKNKYSFQRH   42 (139)
Q Consensus        18 ~~~C~~c~~~~~~~~f~~~~~l~~h   42 (139)
                      ||.|+.||+     .+..+.+|-.|
T Consensus         1 pf~c~kcgk-----cyfrkenlleh   20 (28)
T d2dlqa2           1 PFECPKCGK-----CYFRKENLLEH   20 (28)
T ss_dssp             SCBCTTTCC-----BCSSHHHHHHH
T ss_pred             CCccccchh-----hhhhHhHHHHH
Confidence            345555555     45555554444

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.92  E-value=0.0026  Score=24.66  Aligned_cols=22  Identities=55%  Similarity=1.171  Sum_probs=14.0

Q ss_pred             ccCCCCCccCCChhHHHhhhhh
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |+|+.|-+.|....++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            5566666666666666666554

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.00077  Score=31.11  Aligned_cols=23  Identities=4%  Similarity=-0.117  Sum_probs=11.0

Q ss_pred             CCCCCCCCCCCCCcchhcccccc
Q psy7353         112 ATTPQGQRGQRASPVIDFHKDSV  134 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~~~~  134 (139)
                      |.|..|++.|++..-|+.|..+|
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeccccccccCCHHHHhHhHHhc
Confidence            44455555555555554444443

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.004  Score=24.71  Aligned_cols=24  Identities=29%  Similarity=0.772  Sum_probs=16.3

Q ss_pred             ccCCCCCccCCChhHHHhhhhhhc
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKTVH  106 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h  106 (139)
                      |.|+.|+-.....++|..|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            567777777777777777766533

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0061  Score=24.23  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=16.1

Q ss_pred             cccCCCCCccCCChhHHHhhhhh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |-.|+.|.++.+..+.|..|.++
T Consensus         2 pekc~ecsyscsskaalrvh~ri   24 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERI   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG
T ss_pred             CccCcccccccCcHHHHHHhhcc
Confidence            34677777777777777777776

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.017  Score=23.19  Aligned_cols=22  Identities=18%  Similarity=0.614  Sum_probs=10.6

Q ss_pred             eecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          19 YKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        19 ~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      |.|..||+     ..++...++-|.+.
T Consensus         3 ftc~hcgk-----qlks~~gmkyhvma   24 (30)
T d2ctda2           3 FTCHHCGK-----QLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCSSSCC-----CCSSHHHHHHHHHH
T ss_pred             eechhHHH-----HHhhccCceEEEee
Confidence            34555554     45555445444443

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.29  E-value=0.0018  Score=27.17  Aligned_cols=21  Identities=5%  Similarity=-0.018  Sum_probs=13.4

Q ss_pred             CCCCCCCCCCCCCcchhcccc
Q psy7353         112 ATTPQGQRGQRASPVIDFHKD  132 (139)
Q Consensus       112 ~~C~~C~~~f~~~~~l~~H~~  132 (139)
                      |.|+.|+-+|++.+.|+.|..
T Consensus         9 f~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHTT
T ss_pred             eeccccceeecChhHHHhhhh
Confidence            566666666666666666643

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.59  E-value=0.018  Score=23.49  Aligned_cols=27  Identities=19%  Similarity=0.575  Sum_probs=18.1

Q ss_pred             eeecCC--CCCcCCChHHHHHHHHHhcCC
Q psy7353          54 VFPCPV--CGKEFSRPDKMKNHMKTGCQR   80 (139)
Q Consensus        54 ~~~c~~--C~~~~~~~~~l~~h~~~~~~~   80 (139)
                      .|.|..  |+-.|...+.|..|+..|+|+
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            455654  666677777777777777664

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.019  Score=26.34  Aligned_cols=24  Identities=29%  Similarity=0.910  Sum_probs=16.6

Q ss_pred             eeecCCCCCcCCChHHHHHHHHHh
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMKTG   77 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~~~   77 (139)
                      -|.|..|++.|.+...|..|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            356777777777777777776655

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.51  E-value=0.0016  Score=26.35  Aligned_cols=26  Identities=12%  Similarity=-0.036  Sum_probs=19.2

Q ss_pred             CCCCC--CCCCCCCCCcchhcccccccC
Q psy7353         111 PATTP--QGQRGQRASPVIDFHKDSVFN  136 (139)
Q Consensus       111 ~~~C~--~C~~~f~~~~~l~~H~~~~~~  136 (139)
                      .|.|+  .|+.+|+++.++++|....||
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhcc
Confidence            35563  588888888888888776665

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=94.04  E-value=0.015  Score=25.34  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=15.4

Q ss_pred             CCcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCC
Q psy7353          80 RKVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQR  119 (139)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~  119 (139)
                      +..|.|..||..              +.|+.|-.|+.|+.
T Consensus         3 ~~~~vC~vCGyi--------------~~g~~Pe~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPICGYI--------------HKGEDFEKCPICFR   28 (36)
T ss_dssp             CCEEECSSSCCE--------------EESSCCSBCTTTCC
T ss_pred             CCEEECCCCCCE--------------eeCCCCCcCCCCCC
Confidence            345677777653              23345667777765

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.92  E-value=0.047  Score=20.95  Aligned_cols=22  Identities=32%  Similarity=0.606  Sum_probs=14.6

Q ss_pred             eecCCCCCcchhcccCCHHHHHHHHHH
Q psy7353          19 YKCMECAKVDVIKTFKNKYSFQRHAFL   45 (139)
Q Consensus        19 ~~C~~c~~~~~~~~f~~~~~l~~h~~~   45 (139)
                      |.|+.|-+     .|..+.++..|...
T Consensus         2 ypcp~cfk-----eftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFK-----EFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCC-----EESCHHHHHHHHHH
T ss_pred             cCCchhhH-----HhccccCceEEEEE
Confidence            56777776     67777776666544

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.90  E-value=0.015  Score=25.53  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=15.1

Q ss_pred             CcccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCC
Q psy7353          81 KVFPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRG  120 (139)
Q Consensus        81 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~  120 (139)
                      ..|.|..||..              +.++.|-.|+.|+..
T Consensus         4 ~~~~C~vCG~i--------------~~g~~P~~CPvCg~~   29 (37)
T d1nnqa2           4 KVYICPICGYT--------------AVDEAPEYCPVCGAP   29 (37)
T ss_dssp             CEEECTTTCCE--------------EESCCCSBCTTTCCB
T ss_pred             cEEECCCCCCE--------------ecCCCCCcCCCCCCc
Confidence            45667777653              233456677777653

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.55  E-value=0.028  Score=23.43  Aligned_cols=22  Identities=36%  Similarity=0.780  Sum_probs=18.1

Q ss_pred             cccCCCCCccCCChhHHHhhhh
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMK  103 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~  103 (139)
                      .|.|..||-.|+..+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4788889999999988888754

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.0027  Score=32.07  Aligned_cols=22  Identities=23%  Similarity=0.677  Sum_probs=12.0

Q ss_pred             ccCCCCCccCCChhHHHhhhhh
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      |.|..|++.|.+...|..|.++
T Consensus        16 fYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTTC
T ss_pred             EecccccCccCCHHHHHHHHcc
Confidence            4555555555555555555543

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.22  E-value=0.037  Score=23.47  Aligned_cols=19  Identities=16%  Similarity=0.238  Sum_probs=10.9

Q ss_pred             CcCCChHHHHHHHHHhcCC
Q psy7353          62 KEFSRPDKMKNHMKTGCQR   80 (139)
Q Consensus        62 ~~~~~~~~l~~h~~~~~~~   80 (139)
                      +.|.....|..|++.|+++
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            4455556666666666553

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.076  Score=22.26  Aligned_cols=20  Identities=45%  Similarity=1.011  Sum_probs=8.5

Q ss_pred             eecCCCCCcCCChHHHHHHH
Q psy7353          55 FPCPVCGKEFSRPDKMKNHM   74 (139)
Q Consensus        55 ~~c~~C~~~~~~~~~l~~h~   74 (139)
                      |.|..|++.|.....+.+|-
T Consensus         5 fvcskcgktftrrntm~rha   24 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHA   24 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHH
T ss_pred             eeecccccchhcchHHHHHh
Confidence            34444444444444444443

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.024  Score=28.43  Aligned_cols=23  Identities=22%  Similarity=0.637  Sum_probs=18.8

Q ss_pred             ceeecCCCCCcCCChHHHHHHHH
Q psy7353          53 KVFPCPVCGKEFSRPDKMKNHMK   75 (139)
Q Consensus        53 ~~~~c~~C~~~~~~~~~l~~h~~   75 (139)
                      ..|-|..|++.|.+...|..|.+
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTT
T ss_pred             CEEecccccCccCCHHHHHHHHc
Confidence            34779999999999999888844

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.35  E-value=0.035  Score=23.42  Aligned_cols=27  Identities=22%  Similarity=0.603  Sum_probs=16.6

Q ss_pred             CCcccCCCCCccCCChhHHHhhhhhhc
Q psy7353          80 RKVFPCPVCGKEFSRPDKMKNHMKTVH  106 (139)
Q Consensus        80 ~~~~~C~~C~~~f~~~~~l~~H~~~~h  106 (139)
                      +..|.|..|.+.+...+++.+|--+.|
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            345666666666666666666655434

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.21  E-value=0.19  Score=22.76  Aligned_cols=22  Identities=18%  Similarity=0.643  Sum_probs=9.9

Q ss_pred             eeecCCCCCcCCChHHHHHHHH
Q psy7353          54 VFPCPVCGKEFSRPDKMKNHMK   75 (139)
Q Consensus        54 ~~~c~~C~~~~~~~~~l~~h~~   75 (139)
                      |..|++|+-...++.+|.+|+.
T Consensus        24 patcpic~avirqsrnlrrhle   45 (54)
T d1yuja_          24 PATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHH
Confidence            3444444444444444444443

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.48  E-value=0.12  Score=23.47  Aligned_cols=26  Identities=15%  Similarity=0.554  Sum_probs=20.8

Q ss_pred             CCCcccCCCCCccCCChhHHHhhhhh
Q psy7353          79 QRKVFPCPVCGKEFSRPDKMKNHMKT  104 (139)
Q Consensus        79 ~~~~~~C~~C~~~f~~~~~l~~H~~~  104 (139)
                      .+.|..|+.|+....+..+|.+|...
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            46778888888888888888888765

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.21  E-value=0.14  Score=20.21  Aligned_cols=8  Identities=25%  Similarity=0.335  Sum_probs=2.9

Q ss_pred             cCCChHHH
Q psy7353          63 EFSRPDKM   70 (139)
Q Consensus        63 ~~~~~~~l   70 (139)
                      .|.+.+++
T Consensus        12 ~Frd~saM   19 (28)
T d1ubdc1          12 MFRDNSAM   19 (28)
T ss_dssp             EESSHHHH
T ss_pred             HhhchHHH
Confidence            33333333

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.97  E-value=0.16  Score=20.18  Aligned_cols=21  Identities=38%  Similarity=0.714  Sum_probs=15.8

Q ss_pred             CCCCccCCChhHHHhhhhhhc
Q psy7353          86 PVCGKEFSRPDKMKNHMKTVH  106 (139)
Q Consensus        86 ~~C~~~f~~~~~l~~H~~~~h  106 (139)
                      +.||+.|+....|..|++..|
T Consensus         6 ~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGG
T ss_pred             CCchhhhccHHHHHhHHHHHH
Confidence            458888888888888877544

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.35  E-value=0.17  Score=24.77  Aligned_cols=38  Identities=26%  Similarity=0.526  Sum_probs=23.0

Q ss_pred             CCcceecCCCCCcchhcccCCHHHHHHHHHHhccCCCCceeecCCCCCc
Q psy7353          15 TEGIYKCMECAKVDVIKTFKNKYSFQRHAFLYHEGCQRKVFPCPVCGKE   63 (139)
Q Consensus        15 ~~~~~~C~~c~~~~~~~~f~~~~~l~~h~~~~~~~~~~~~~~c~~C~~~   63 (139)
                      ....|.|+.|++     .|.+...++.-    ...  ...|.|..|+..
T Consensus        11 ~~~~y~Cp~C~~-----~ys~Lda~~L~----d~~--~~~F~C~~C~~e   48 (62)
T d1vd4a_          11 NRASFKCPVCSS-----TFTDLEANQLF----DPM--TGTFRCTFCHTE   48 (62)
T ss_dssp             SSSEEECSSSCC-----EEEHHHHHHHE----ETT--TTEEBCSSSCCB
T ss_pred             cCCceECCCCCC-----CcchhhHHHhc----CcC--CCeEEecCCCCE
Confidence            345678888887     77776655432    111  346778777643

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=86.17  E-value=0.28  Score=21.28  Aligned_cols=33  Identities=6%  Similarity=0.006  Sum_probs=18.6

Q ss_pred             ccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCC
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRAS  124 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~  124 (139)
                      +.|+.||..|-        +.. .+-...-.|+.|+.....+
T Consensus         3 ~vc~~cG~~Yh--------~~~-~pPk~~g~CD~cg~~L~qR   35 (37)
T d2ak3a2           3 WIHPGSGRVYN--------IEF-NPPKTMGIDDLTGEPLVQR   35 (37)
T ss_dssp             EEETTTTEEEE--------TTT-BCCSSTTBCTTTCCBCBCC
T ss_pred             eeeCCcCChhh--------hcc-CCccccCCccCCCCcCEec
Confidence            45677776652        222 2333456788887665544

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.84  E-value=0.71  Score=20.02  Aligned_cols=33  Identities=6%  Similarity=-0.018  Sum_probs=17.6

Q ss_pred             ccCCCCCccCCChhHHHhhhhhhcCCCCCCCCCCCCCCCCCC
Q psy7353          83 FPCPVCGKEFSRPDKMKNHMKTVHDCFMPATTPQGQRGQRAS  124 (139)
Q Consensus        83 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~  124 (139)
                      +.|+.||..|-        +.. .+....-.|+.|+..+..+
T Consensus         3 r~C~~cG~~Yh--------~~~-~ppk~~g~CD~cg~~L~qR   35 (38)
T d1akya2           3 LIHPASGRSYH--------KIF-NPPKEDMKDDVTGEALVQR   35 (38)
T ss_dssp             EECTTTCCEEE--------TTT-BCCSSTTBCTTTCCBCBCC
T ss_pred             cCCcCccchhh--------hhc-cCcCcCCccCCCCCEeeec
Confidence            35666776552        222 2333445777777665544

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.76  E-value=0.16  Score=19.46  Aligned_cols=19  Identities=11%  Similarity=-0.006  Sum_probs=12.0

Q ss_pred             CCCCCCCCCCCCcchhccc
Q psy7353         113 TTPQGQRGQRASPVIDFHK  131 (139)
Q Consensus       113 ~C~~C~~~f~~~~~l~~H~  131 (139)
                      .|+.|..+|.+...-..|.
T Consensus         2 vcpycslrf~sp~lk~ehe   20 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEHE   20 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHhh
Confidence            4777777777665544443

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.76  E-value=0.23  Score=23.07  Aligned_cols=31  Identities=23%  Similarity=0.501  Sum_probs=19.5

Q ss_pred             CcccCC--CCCccCCChhHHHhhhhhhcCCCCC
Q psy7353          81 KVFPCP--VCGKEFSRPDKMKNHMKTVHDCFMP  111 (139)
Q Consensus        81 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~  111 (139)
                      +||.|.  .|...|.-..+|.-|-+..|....|
T Consensus        19 rpyrcvhqgc~aaftiq~nlilhy~avh~s~lp   51 (61)
T d1x3ca1          19 RPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP   51 (61)
T ss_dssp             CSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC
T ss_pred             CceeeeccchhhhhhhhhhHHHHHHHHhhhcCc
Confidence            566663  3666777777777776665654443

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=80.55  E-value=0.56  Score=21.22  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=16.9

Q ss_pred             cccCCCCCccCCChhHHHhhhhhhc-CCCCCCCCCCCCCC
Q psy7353          82 VFPCPVCGKEFSRPDKMKNHMKTVH-DCFMPATTPQGQRG  120 (139)
Q Consensus        82 ~~~C~~C~~~f~~~~~l~~H~~~~h-~~~~~~~C~~C~~~  120 (139)
                      .|.|..||..|.....    -.+.. .-...|.|+.|+..
T Consensus         3 ~y~C~~CgyiYd~~~G----dgt~Fe~LP~dw~CP~C~a~   38 (45)
T d6rxna_           3 KYVCNVCGYEYDPAEH----DNVPFDQLPDDWCCPVCGVS   38 (45)
T ss_dssp             CEEETTTCCEECGGGG----TTCCGGGSCTTCBCTTTCCB
T ss_pred             CeEeCCCCeEECcccC----CCCCHHHCCCCCCCcCCCCc
Confidence            4667777765543211    01101 01124788888754